lowQualScore : 1 1 111 11 2222 222 11111 11 1 44444444 1 1 11 11 1 11 1 11 2 55555555555 2 2222222222 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11111 11111 11111111 111 111 5555555555555555555555555555555555555555555555555555555555555555555555 1111 111111
lowQualScore : 3 3 88 3 4 0 1 000 0 55 2 4444 4 1 0 7777 6 0 6 5 6 5 333 22222 666 44 7 1 1 11111111 1 7 4 0 1 00 5 55 1 55 0 7 1 1 33 4 4 77 3 4 2 5 2 1 2 4 0 99 2 333 8888888 3 55555555555 1 0 22 3333 1 44 6 9999999999 22 555555 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444 7 11111 44 4 88888 11111 22 77777777 111 1 1 111 222 22 6666666666666666666666666666666666666666666666666666666666666666666666 444 1 6666 333333 1
lowQualScore : . . .. . . . . ... . .. . .... . . . .... . . . . . . ... ..... ... .. . . . ........ . . . . . .. . .. . .. . . . . .. . . .. . . . . . . . . . .. . ... ....... . ........... . . .. .... . .. . .......... .. ...... ..................................................................................... . ..... .. . ..... ..... .. ........ ... . . ... ... .. ...................................................................... ... . .... ...... .
lowQualScore : 0 7 22 7 0 8 4 000 6 77 1 3333 3 1 3 1111 7 4 3 0 7 8 333 55555 444 66 1 7 4 44444444 4 1 0 7 4 77 0 77 4 77 6 1 6 4 11 3 3 33 4 3 4 6 4 2 4 7 4 00 1 777 9999999 2 88888888888 8 0 55 7777 7 11 2 0000000000 44 000000 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 44444 44 4 00000 00000 33 66666666 888 2 2 333 111 44 2222222222222222222222222222222222222222222222222222222222222222222222 888 1 9999 555555 2
consensus : TATTGTTTTTGTTTTTTCGTATAAATTTCAGGTCCTTCGCCGGCATCTTGCTAGAGCANTAACTAGGAAGCGCCCAACTGGTTATGAGGGTGGACTTATNATACATCAGGACAACGCACCAGCNCACNCGTCGAGAGAAGTGCA-GACG---ACGATTGAGA--TNCAA----ATGGAGGCAGAAGTTCTT----CCA-CATCCGCCGTACTCCCCAGACCTAGCNCCGTGCG---ATTTC--GCACTCTT---TCCN-AAATTAAAGTGCGAA-TTGAAGGGCGAACATTTTAA--------TGACTTAAAA-GAACTTCAAACGGAATCTAAT-TCCA-TTTTGTATTCATACC--CATCGGA-CTGGT--ACAAGCAAGTTTTTCA-TCAGTGG-GTAGAACGNCGCCACAAATGTATAGAAAATAGNGGTGCT-TACTTGT-G-AAANAAATT-GACGTCG---C---G---ACGNCGC--CTT---A-AA-ATCT--GAC----CT-GCGGC--AGATA-GG-----CG--TAC------ATGACG--TGTT---TGA-AA-TA----CATG--------TNA--NT----T--A-T--TTA-T-TNTA--N---T-----A----TATATTTTCTTCATACT--TTGCAT-----ACAGT---TTG-C--AG-TT-AGATT-A-A-AT-ACNAT---AA-AC-T---G---NA-------AATAT-----TNCA------NATANAT--NAG--A--T--GT----CG-TNTTCAT-TTTA-T-GAGATT-----TGTCCA-CGAACTTCTGGATAACCCCTCGTA
Reference ( gi|5192 ) : TATTGTTTTTGTTTTTTCGTATAAATTTCAGGTCCTTCGCCGGCATCTTGCTAGAGCAATAACTAGGAAGCACCCAACTGGTTATGAGGGTGGACTTATAATACATCAGGACAACGCACCAGCTCACTCGTCGAGAGAAGTGCA-GACG---ACAATTGAAA--TACAA----ATGGAGGCAGAAGTTCTT----CCA-CATCCGCCGTACTCCCCAGATCTCGCACCGTGTG---ATTTC--GCACTCTT---TCCG-AAATTAAAGTGCGAA-TTGAAGGGCAAACATTTTAA--------TAACTTAAAA-GAACTTCAAACGGAATCTAAT-TCCA-TTTTGTATTCATACC--CATCGGA-CTGGT--ACAAGCAAGTTTTTCA-TCAGTGG-ATAGAACGCCACCGCAAATGTATAGAAAATAGCGGTGCT-TACTT-T-G-AGAAGAATT-GACGTCG---C---G---ACGTCGC--CTT--CA-AA-AT-T--GAC----CT-GCGGC--ACATC-AC-----TG--TAC------ATGGTG--TATA---TCG-AA-TG----TATG--------TAA--AT----T--A-T--TTG-T-TATA--T---T-----G----TGTATTTTATTTAAAAT--TTGTAT-----ACAAC---TTA-C--AC-TG-AGATT-G-A-AT-ACTAT---AA-AC-T---G---AA-------AATAT-----TACA------CATATAT--AAG--A--T--GT----AG-TTTTTAT-TTTA-T-AGCATG-----TGTCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5194 : TATTGTTTTTGTTTTTTCGTATGAATTTCAGGTCCTTCGCCGGCATCTTGCTAGAGCAATAACTAGGAAGCACCCAACTGGTTATGAGGGTGGACTTATAATACATCAGGACAACGCACCAGCTCACTCGTCGAGAGAAGTGCA-GACG---ACAATTGAAA--TACAA----ATGGAGGCAGAAGTTCTT----CCA-CATCCGCCGTACTCCCCAGATCTCGCACCGTGTG---ATTTC--GCACTCTT---TCCG-AAATTAAAGTGCGAA-TTGAAGGGCAAACATTTTAA--------TAACTTAAAA-GAACTTCAAACGGAATCTAAT-TCCA-TTTTGTATTCATACC--CATCGGA-CTGGT--ACAAGCAAGTTTTTCA-TCAGTGG-GTAGAACGCCACCGCAAATGTATAGAAAATAGCGGTGCT-TACTT-T-G-AGAAGAATT-GACGTCG---C---G---ACGTCGC--CTT--CA-AA-AT-T--GAC----CT-GCGGC--ACATT-AC-----TG--TAC------ATGATG--TATA---TCG-AA-TG----TATG--------TAA--AT----T--A-T--TTG-T-TATA--T---T-----G----TGTATTTTATTTAAAAT--TTGTAT-----ACAAC---TTA-C--AC-TG-AGATTAA-A-AT-ACTAT---AA-AC-T---G---AA-------AATAT-----TACA------CATATAT--AAG--A--T--GT----AG-TTTTTAT-TTTA-T-AGCATG-----TGTCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5193 : TATTGTTTTTGTTTTTTCGTATAAATTTCAGGTCCTTCGCCGGCATCTTGCTAGAGCACTAACTAGGAAGCACCCAACTGGTTATGAGGGTGGACTTATAATACATCAGGACAACGCACCAGCTCACTCGTCGAGAGAAGTGCA-GACG---ACAATTGAAA--TACAA----ATGGAGGCAGAAGTTCCT----CCA-CATCCGCCGTACTCCCCAGATCTCACACCGTGTG---ATTTC--GCACTCTT---TCCA-AAATTAAAGTGCGAA-TTGAAGGGCAAACATTTTAA--------TAACTTAAAA-GAACTTCAAACGGAATCTAAT-TCCA-TTTTGTATTCATACC--CATCGGA-CTGGT--ACAAGCAAGTTTTTCA-TCAGTGG-GTAGAACGCCACCACAAATGTATAGAAAATAGCGGTGCT-TACTT-T-G-AGAAGAATT-GACGTCG---C---G---ACGTCGC--CTT--CA-AA-AT-T--GAC----CT-GCGGC--ACATC-AC-----TG--TAC------ATGATG--TATA---TCG-AA-TG----TATG--------TAA--AT----T--A-T--TTG-T-TATA--T---T-----G----TGTATTTTATTTAAAAT--TTGTAT-----ACAAC---TTA-C--AC-TG-AGATT-G-A-AT-ACTAT---AA-AC-T---G---AA-------AATAT-----TACA------CATATAT--AAG--A--T--GT----AG-TTTTTAT-TTTA-T-AGCATG-----TGTCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5195 : TTCTTATTGTTTTTTCGTATAAATTTCAGGTCCTTCGCCGGCATCTTGCTAGAGCAATAACTAGGAAACACCCAACTGGTTATGAGGGTGGACTTATAATACATCAGGACAACGCACCAGCTCACTCGTCGAGAGAAGTGCA-GACG---ACAATTGAAA--TACAA----ATGGAGGCAGAAGTTCTT----CCA-CATCCACCGTACTCCCCAGATCTCGCACCTTGTG---ATTTC--GCACTCTT---TCCG-AAATTAAAGTGCGAA-TTGAAAGGCAAACATTTTAA--------TAACTTAAAA-GAACTTCAAACGGAATCTAAT-TCCA-TTTTGTATTCATACC--CATCAGA-CTGGT--ACAAGCAAGTTTTTCA-TCAGTGG-GTAGAACGCCACCACAAATGTATAGAAAATAGCGGTGCT-TACTT-T-G-AGAAGAATT-GACGTCG---C---G---ACGTCGC--CTT--CA-AA-AT-T--GAC----CT-GCGGC--ACATC-AC-----TG--TAC------ATGATG--TATA---TCG-AA-TG----TATG--------TAA--AT----T--A-T--TTG-T-TATA--T---T-----G----TGTATTTTATTTAAAAT--TTGTAT-----ACAAC---TTA-C--AC-TG-AGATT-G-A-AT-ACTAT---AA-AC-T---G---AA-------AATAT-----TACA------CATATAT--AAG--A--T--GT----AG-TTTTTAT-TTTA-T-AGCATG-----TGTCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5196 : AAATTTCAGGTCATTCACTGTTCTCTAGGAAGAGCACTAGCCAGGAAGTGGCCGAATGGTTATGAGGGCGGACTTATCATTCATCGGGATAATGCACCTGCGCACACCTCCAAGGAAGTGCT-GACG---ACAACTGAAA--TCAAA----ATGGAGGCTGAGGTTCTT----TCC-CACCCCCATTACTCTCCAGACCTAGCTCCATGCA---ATTTC--GCACTTTT---TCC------TAAAGTGTGAA-TTGAAGGGAAAACAATTTAA--------CGACTTACAT-GAACTTAGAACAAAAGCTAAC-TCAA-TTTTATATTCATAGC--CATCCGA-CTGGT--TCAGTCAGGTTTATCA-ACAGTGG-ATAGAGTGACA
gi|5198 : TATTACACAT--GGACAATGCACCATCACATACGGC-AGAAACATCCAAGGCG---GTTCTTGAGAAGTGCAACATTAT-----CA-----TCCT----ACAGCATCTTCCTTACAGCCCTGATTTAGCGCTGTGCG---ATTTT--GCCCTCTT---TCCGTGCATTAAAA-AAGAACTTAGAGGGCGCCTATTTGAAGACATATCTGAATTAAAATGTGCTTT--GCAGAATATTGTGTCCA-----G----CATACCATCTTCGGATTTCGTTGACATGTA-------CACTAAATGGTGTA-AACGGTGGCAAAAATGTATAGACAACGGAGGAGAG-TATTT-T-G-AGAAAGAGT-GAC-TCG---
gi|5197 : TATTACACAT--GGACAATGCACCATCACATACGGC-AGAAACATCCAAGGCG---GTTCTTGAGAAGTGCAACATTAT-----CA-----TCCT----ACAGCATCTTCCTTACAGCCCTGATTTAGCGCTGTGCG---ATTTT--GCCCTCTT---TCCGTGCATTAAAA-AAGAACTTAGAGGGCGCCTATTTGAAGACATATCTGAATTAAAATGTGCTTT--GCAGAATATTGTGTCCA-----G----CATACCATCTTCGGATTTCGTTGACATGTA-------CACTAAATGGTGTA-AACGGTGGCAAAAATGTATAGACAACGGAGGAGAG-TATTT-T-G-AGAAAGAGT-GAC-TCG---
gi|5199 : -GACGTGTACGACTGAGA--TCCAA----ATGAAGGCTGA-GTTCTTTTTCCC----TCCCCCTTAATATCCAGACTTCGCTCCGTACG---ATTTCCAACACTTTTATTTCCT-AAATAAAAGCGTGAG-CTGAAAAGAAAACAATTTGA--------AGACTTACAT-GAACTTCAAAC-GAACGCAAA-TCCATTTTTGTACTCTAACC--CATCGGA-CTGGT--TCAATCGAATTTTTCA-ACAATGC-AAAGAATGACAC-------GGATAG---------------TATTT-T-GAAGAAAAAAT--ACTTCG---C---A---ACGTTA----TTGACA-AA-A--C--GAA----CT-GCGAC--AAAAT-GC-----TA--TAC------CCTATG--TGGT---TCA-AA-GG----TAAG--------TCA--AG----C--A-T--GCA-T-TAGA--C---T-----G----TATGTTCTCCTTGAATT--CTG-AT-----ACGGT---TTA-C--A---G-AG--T-G-ATGTGGCTAT---AA-AC-T---T--------------TGT-----CACATTCAATCATATCT--AAC--A-----GT----TGCTTTTCAT-TTTATT-AGTTTG-----TTTCGG-CGATCTTCTGGATAACTCCTCATA
gi|5200 : AGGAGTTGTT----CCA-CATGCACCATATTCCCCAGACCTAGCACTGTGTG---ACT
gi|5201 : GGAGTTCTT----CCA-CATGCACCATATTCCCCAGACCTAACCCCGTGTGACTATTTC-----TTGTT---CCCT-AAACTGAA
gi|5203 : AGTTCTT----CCA-CATGCACCATATTCCCCAGACCTAGCCCCGTGTGACTATTTC-----TTGTT---CCCT-AAACTGAA
gi|5202 : AGTTCTT----CCA-CATGCACCATATTCCCCAGACCTAGCCCCGTGTGACTATTTC-----TTGTT---CCCT-AAACTGAA
gi|5204 : AGTTCTT----CCA-CATGCACCATATTCCCTAGACCTAGCCCCGTGTGACTATTTC--TTATTC------CCT-AAACTGAA
gi|5206 : AGAGTAGGGATA-T-TACTTGT-G-AAATAAATT-AACGTCA---T---G---ACGACGTAACGT-----AA-ATCT--GAC----CT-GCGGC--ATATA-GG-----CG--TAC------ATGAGG--TGTT---TGA-AA-AA----CATG--------T-A--AC----T--A-T--T---T-TAT---T---T-----GAATATATATTTTCTTCATATT--TTGCAT-----ACGGT---TTG-A--AG-TT-TTATT-A-A-AT-ATAAT---AC-A--T---G---TA-------AA-AC-----TCCA------AATAAAT--CGGACA--T--GT----CA-TCTTCAT-ATTA-T-GAGATT-----TGTACA-CAAACTTCTGGACAACCCCTCGTA
gi|5207 : GGCGCTGTACTT-TTG-AAATAAATT-GACATGG---G---G---ACAACGC--ATC--GT-AA-ATCT--GAC----CT-GCGGC--AGATA-GG-----CG--TAC------ATGACG--TGTT---TGA-AA-TA----CATG--------T-A--GC----T--ATT--TTA-T-TTTA--A---T-----A----TACATTTCCTTCATATT--TTGCGT-----ACGGT---TTG-A--AG-TT-ATATT-A-A-AT-ATAAT---AC-A--T---G---TA-------AA-AC-----TCCA------AATAAATCCGAC--A--T--GT----CA-TCTTCGT-ATTA-T-GAGATT-----TGTCCA-CGAACTTCTAGATAACCCCTCATA
gi|5208 : T-TACTTGT-A-AAATAAATT-GACGTTG---CAATG---ACGTAAC--CT------AA-ATCT--GGC----CT-GCGGC--AGATA-GG-----CG--TAC------ATGACA--TGTT---TGA-AA-TA----CATG--------T----------T----T--CTG-T-TTTA--T---TTAAATA----TATATTTTCTTCATACT--TTGCAT-----ACAGT---TTG-C--AG-TT-ATATT-A-A-AT-ATAAT---AC-A--T---G---TA-------AA-AC-----TCCA------AATCAAT--CAG--A--TATGT----CA-TGTTCAT-ATTA-T-GAGATT-----TATCCA-CGAACTTCTGGATAACCCATCGTA
gi|5209 : T-TACTTGT-G-AAATAAATT-AATGTTG---CAACG---ACGTAGC--AT------AA-ATCT--GAC----CT-GCAGC--AGAT--A------TGCCTAT------ATGACA--TGTT---TGA-AA-TA----CATG--------TAA---C----T--A-T--TT----TAT---T---T-----GAATATATATTTTCTTTATACT--TTGTGT-----ACAAT---TTG-A--AG-TT-ATATT-A-A-AT-ATAAT---AC-A--T---G---TA-------AA-AC-----T-CA------AATAAATCCGAC--A--T--GT----CA-CTTTTAT-ATTA-T-GAGATT-----TGTCCA-CAAACTTCTTGATAACCCCTCGTA
gi|5210 : T-TACTTGT-A-AAATAAATT-GACATCG---C---A---ACGACGTAACGT-----AA-ATCT--GGC----CT-GCGGC--AGATA-GG-----CG--TAC------ATGACA--TAT----TTA-AA-TA----CATG--------TTA--CT----G--T-T--TTA-T-TTGA--A---T-----A----TATATTTTCTTGATACT--TTGCAT-----ACAGT---GTG-C--CG-TT-AGATT-A-A-AT-ATAAT---AC-A--T---G---TA-------AA-AC-----TCCA------AATAAAT--CAG--ACAT--GT----CA-TGTTCAT-GTTA-T-GAGGTT-----TGTCCA-CGAACTTCTGGATAACCCCTTGTA
gi|5211 : T-TACTTGT-G-AAATAAATT-GACGTCG---C---ACAAACGTAAC--GT----A-AA-AC-T--GGC----CT-GCTGT--AGATA-GG-----CG--TAC------GTGACA--TGTT---TGA-AA-TA----CATG--------T----------T--A-T--T-G-T-TTTA--T---TTAAAAA----TATATTTTCTTCATACT--TTGCAT-----ACAGT---TTG-C--AG-AT-ATATT-A-A-AT-ATAGT---AC-A--T---G---TA-------AA-AC-----TCCA------AATAAATCCAAC--A--T--GT----CA-TGTTCAT-ATTA-T-GAGATT-----TGTCCA-CGAACTTTTGGATAACCCCTCGTA
gi|5212 : T-TACTTGT-A-AAATAAATT-GACAACG---T---A---ATGT-------------AA-ATCT--GGC----CT-GCGGC--AAATA-GG-----CG--TAC------ATGACA--TGTT---TGA-AA-TA----CATG--------TA----C----T--G-T--TT----TATT--TAAAT-----A----TATATTTTCTTCATATT--TTGCAT-----ACAGT---TTG-A--AG-TT-AGATG-A-A-AT-ATAAT---AA-A--T---G---TA-------AA-AC-----TCCA------AATAAAT--CAG--ACAT--GT----CA-TGTTCAT-ATTA-T-GAGATT-----TGTCCA-AGAACTTCTGGATAACCCCTCGTA
gi|5213 : T-TACTTGC-A-AAAATAATT-GACGTCG---A---G---ACGACG---------A-AATGT-T--GAT----CT-GTGGCG-GCGGCGGC-----TG--ATC------AT-ATG--TA-------G-AA-TA----CATG--------CAACTGT----TTCA-T--TTGAA-TATA------T-----A----TATATATTATTCATAGT--TTGCAT-----ACAAT---TTG-C--AA-TT-AGATT-A-A-AT-AATAT---AC-AT-A---T---AA-------AACTT-----TAAA------TAAATCC--GAC--T--T--GC----CA-TTTTCAC-TTTA-TGAGC-TT-----TGCTCA-CAAACTTCT
gi|5214 : T-TACTTGT-A-AAATAAATT-GACATCG---C---A---ACGACGT--------A-AC-GT-A--AAT----CTAGCGGC--AGATA-GG-----CG--TGC------ATGACA--TGTT---TGA-AA-TA----CATG--------TTA--CT----G--T-T--TTA-T-TTGA--A---T-----A----TATATTTTCTTCATACT--TTGCAT-----ACAGT---TTG-C--TG-TT-AGATT-A-A-AT-ATAAT---AC-A--T---G---TA-------AA-AC-----TCCA------AATAAAT--CAG--ACAT--GT----CA-TGTTCAT-ATTA-T-GAGATT-----TAT------AACTTCTGGATAACTCCTCGTA
gi|5215 : T-TA-TT-T-GTAAAATAATTTGCCGTCG---C---A---ACAACGTAACGT-----AA-ATCT--GAT----CT-GCGGC--ATATA-GG-----CG--TAC------CTGACA--TGT----TAG-AA-TA----TAT-----------------------A-T--TT-----------------------------TTTCATC-ATACT--TTGCAT-----ACAGT---TTG-C--GG-TA-AGATT-A-G-AT-A---T---AACACAT---A---TA-------AATCT-----TTGA-------ATAAAT--CAG--ACAT--GT----CA-TGTTCAT-AATA-T-GATATT-----TGTCAA-CAAACTTCTGGATAACCCCTCGTA
gi|5216 : T-TACTTGT-A-AAATAAATT-GACGTCGAAAT---G---GCGTAAC--GT------AA-ATCT--GGC----CT-GTGGC--AGGTA-GG-----CA--TAC------ATGACA--TGTT---TGA-AA-TA----CATG--------TTA--CT----G--T-T--TTA-T-TTGA--A---T-----A----TATATTTTCTTCAGACT--TTGCAT-----ACAGT---TTG-C--AG-TT-AGATT-A-A-AT-A-TA----AA-ACAT---G---TA-------AA-AC-----TCCA------AATAAATCCGAC--A--T--GT----CA-TGTTCAT-ATTG-T-AG
gi|5205 : AATT-GACGTCG---C---A---ACGACGTAACGT-----AA-ATCT--GGC----CT-GCGACCGATAT--GC------G--TAC------GTTGCA--TGTT---TGA-AA-TA----CATG--------TGA--CT----G--C-T--TTA-T-TTGA--A---T-----A----TAAATTTTCTTCATACT--TTACAT-----ACAGT---TTG-C--AG-TT-AGATT-A-A-AT-ATAAT---AC-A--T---G---TA-------AA-AC-----TCCA------AATAGATG-AAC--A--T--GT----CA-TGTTTAT-ATTA-T-GAGATT-----TGTTCA-CGAACTTCTGGATAACCCCTCGTA
gi|5217 : tgagtggagcgacgagtgtgaatgagaaaattacttgtaaactaAATT-GACGTCG---C---G---ACAACA-----TAACATAA-ATCT--GAC----CT-ACGGC--AGATA-GG-----TG--TAC------ATGACA--TGTT---TGA-AA-TA----CATG--------T-A--GC----T--ATT--TTA-T-TTTA--A---T-----A----TATATTTTCTTCATATT--TTGCAT-----AAGGT---TTG-A--AT-T--ATATC-T-A-AT-ATAAT---AC-A--T---G---TA-------AA-AC-----TCCA------AATAAATCCGAC--A--T--GT----CA-TCTTCAT-ATTA-T-GAGATT-----TGTCCA-CAAACATCTAGATAACCCCTAGTA
gi|5222 : A-AA-AT-TACGACGTTACT-GCGGC--AGATA-GG-----CA--TAG------AAGACA--TGTT---TGA-AA-TA----CATG--------TTA--CTGTTTT--A-T--TTG-AATATA--T---T--------------TTTTCCTCATACT--TTGCAT-----ACAGT---TTG-C--AG-TT-AGATT-A-A-AT-ATAAT---AC-A--T---G---TA-------AATCT-----C-CA------AATAAAT--CAG--ACAT--TT----CA-TGTTCAT-TATA-T-GATATT-----TGTCCA-CGATCTTCTGGATAACCCCTCGTA
gi|5221 : A-AA-AT-T--GAA----CT-GCGGC--ACTTC-A------TG--TGC------ATG-------------------------TACG--------TTA---C----T--A-TGGTTA-C-TATA--------------------ACTTTAT----AATGGTTGCATGAAAAACAATAAATTA-CTTAC-TATAGATTTGTA-AT-AC-AT---AA-A--T---GTTTAAGTTATGTAAT-T-----TACA------CTTATG---AAC--G--T--GTGCACAA-TAATT-T-TTTA-T-AACATT-----TGTCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5220 : A-AA-AT-T--GAG----CT-GCGGC--ACTTC-A------TG--TGC------ATG-----TACA---TT----------------------------AC----T--A-TGGTTA-C-TATA--------------------ACTTTAT----AATGGTTGCATGAAAAACAATAAATTA-CTTAC-TATAGATTTGTA-AT-AC-AT---AA-A--T---GTTCAAGTTATGTAAT-T-----TATA------CTTATG---AAT--G--T--GTGCACAA-TAATT-T-TTTA-T-AACATT-----TGTCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5219 : A-AA-AT-T--GAG----CT-GCGGC--ACTTC-ATGTGCATG--TACGTTACTATGGTTACTATAACTTCATAA-TGGTTGCATGAAAAACAATAA--AT----T--A-C--TTA-C-TATAGAT---T----------TGTAATACAT---AAAT----GTTT-----A--AG---TTA-------TG-TAATT-T-A-TT-CTTAT---GA-ACGT---G----------------------TGCA------CA---AT--AA----------T-------TTTTTAT-T-------ACATT-----TGTCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5223 : -AA-ATCT--GGC----CT-GCGGC--AGATA-GG-----TG--TAC------ATGACA--TGTT---TGA-AA-TA----CATG--------TTA--CT----G--T-T--TTA-T-TTGA--A---T-----A----TATATTTTCTTCATACT--TTGCAT-----ACAGT---TTGGC--AG-TT-ATATT-A-A-AT-ATAAT---AC-A--T---G---TA-------AA-AC-----TCAA------AATAAAT--CAG--ACAT--GT----CA-TGTCCAT-ATTA-T-GAGATT-----TGTCCA-CAAACTTCTGGATAACCCCTCGTA
gi|5224 : ----CT-GCGGC--AGGCG-GG-----CG--TAC------ATGACA--TGT----TCG-AAATA----CATG--------TTA--CT----G--T-T--TTT-T-TTTA--A---T-----A----CATATTGTCTTCATACT--TTGCAT-----ACAGT---TTG-C--AG-TT-AGATT-T-A-AT-ATAAT---AC-A--T---G---TA-------AATAT-----C-CA------AATTAAT--TAG--A--C--AT----G-----TTATGTTCA-T-AATATGAGATTTGTCCA-CGAACTTCTGGATAACCCTTCGTA
gi|5218 : ---T-----A----TATATTTTCTTCATACT--TTGCAT-----ACAGT---TTG-C--AGATA-AGAT----A-AT-ATTAT---AC-A--T---G---TA-------GAAAT-----CAAA-------ATAAAT--CAG--ACAT--GT----CA-TGTTCAT-ATTA-T-GAGATT-----TGTCC--CGAACTTCTGGATAACCCCTCGTA
gi|5225 : aattgatgtcgcaacgatgtaacgtaatatcttgccagcggcagataggcgtacatgacatttgaaT--TTACAT-----ACAGT---TCA-CT-GT-TG-ATATA-T-A-AC-AC-ATGGAAA-AC-T---T---AA-------AATA---------A-------ATCTGT--AAA--A--TT-GT----AA-TTTTTAT-TTTA-T-AAGATT-----TGTCCA-CAAGCTTCAGGATAACCCATCGTA
gi|5226 : ---TTA-C--AG-TT-TGATT-A-A-AT-A-TAT---AA-CA-T---G---AA-------AATCT-----C-CA------AATAAAT--CAG--ACAT--GT----CA-TGCTCAT-TATA-T-GATATT-----TGTCCA-CAAACTTCTGGATAACCCCTCGTA
gi|5227 : -A-AT-ACT-T---AA-GT-T---GTGAAA-------AATATAGCTATGTA------CTTGCGT--AA---A--T--AT----AG-ATTTTAT-TT-----A--ATT-----TGTCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5229 : -A-AT-ACT-T---AA-GT-T---GTGAAA-------AATATAGTTATGTA------CTTGCAT--AA---A--T--AT----AG-ATTATAT-T------AA-ATT-----TGTCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5228 : -A-AT-ACT-T---AA-GT-T---GTGAAA-------AATAT-----AGCG-------ATGCAT--TTGC-A--T--AT----AG-ATTTTAT-T------AA-ATT-----TGTCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5230 : -A-AT-ACT-T---AA-GT-TTATA---AA-------AATATAGCAATGTA------CTTGCAT--AAG-----T--AT----GG------AT-TTTA-T-CAAATT-----CGTCCA-TGAACTTCTGGATAACCCCTCGTA
gi|5231 : -A-AT-ACT-T---GA-GT-T---GTGAAA-------AATAT-----AGCA-------ATGTAC--A-------T--AT----GG-ATTTTAT----A-A-AG-AT------TGTCCA-AGAACTTCTGGATAACCCCTCGTA
gi|5232 : -AT-ACT-T---AA-GT-T---GTGAAA-------AATATAGCTATGCA------CTTGCAT--AA---A--T--AA----AG-ATTTTAT-T------AA-ATT-----TGTCCAACGAACTTCTGGATAACCCCTCGTA
gi|5233 : T---AA-GC-T---GTGCAA-------AATATAGCAATGTA------CTTGCAT--GA---A--T--AT----GG-ATTTTAT-T------AA-ATG-----TGTCCA-TGAACCTCTGGATAACCCCTCGTA
gi|5234 : T----AG-TTTTTAT-TTTA-T-TTGGTT-----TGTCCA-CAAACTTCTAGATAACTCCTCGTA
gi|5235 : TTGAT-TTTA-T-AAAATG-----TGTCTA-TGAAGTCCTGGATAACCCCTCGTA
Alignments
lowQualScore : 1 11 2222 222 111 11 1 33333333 1 1 11 1 11 1 55555555555555555 222 222 2 33333333333
lowQualScore : 1 2 1 4 1 1 7 0 888 6 33 1 1111 2 6666 6 5 3 0 1 1 111 000 1 555 00 5 0 0 2 66666666 0 5 2 0 88 3 33 0 33 5 0 0 8 1 1 5555 66 5 0 2 4 2 5 2 9 22 1 333 333 00000000000000000 4444 5 44 1 1 0 7 2 000 88 3 333 1 1 1 1 1 44 6 999 3333 0 2 2 44 1 11111111111 44 1 1 33 1 1 0 0 11 1
lowQualScore : . . . . . . . . ... . .. . .... . .... . . . . . . ... ... . ... .. . . . . ........ . . . . .. . .. . .. . . . . . . .... .. . . . . . . . . .. . ... ... ................. .... . .. . . . . . ... .. . ... . . . . . .. . ... .... . . . .. . ........... .. . . .. . . . . .. .
lowQualScore : 0 8 0 3 0 0 9 0 888 2 88 0 2222 5 5555 2 1 8 2 0 1 555 555 0 888 99 1 2 0 0 22222222 0 1 2 0 22 2 88 0 88 1 2 0 9 1 0 1111 99 0 7 4 1 5 0 1 7 99 0 777 999 55555555555555555 2222 7 11 8 8 9 6 3 333 88 4 222 8 7 7 7 6 99 4 444 8888 1 6 6 00 0 77777777777 22 5 5 99 0 8 5 8 66 1
consensus : TATTGTTTTTGTTTTTTCGTATAAATTTCAGGTCCTTCGCCGGCATCTTGCTAGAGCAATAACTAGGAAGCACCCAACTGGTTATGAGGGTGGACTTATAATACATCAGGACAACGCACCAGCTCACNCGTCGAGAGAAGTGCA-GACG---ACAATTGAAA--TACAA----ATGGAGGCAGAAGTTCTT----CCA-CATCCGCCGTACTCCCCAGACCTAGCNCCGTGCG---ATTTC--GCACTCTT---TCC-TAAATTAAAGTGCGAA-TTGAAGGGCAAACATTTTAA--------TGACTTAAAA-GAACTTCAAACGGAATCTAAT-TCCA-TTTTGTATTCATACC--CATCGGA-CTGGT--ACAAGCAAGTTTTTCA-TCAGTGG-GTAGAACGNCGCCGCAAATGT--AT-AGAAAATAGCGGTGCT-TACTTGTGA--AATAAATTGACGTCGCG---ACGA--CG---C--CNT---A----A----AAT-CTGGCCTGCGGCAGATAGGC-GTACATGA-CGTGTTTGAAATACATGTNACTGT-TTTATTTGAATATATAT---T-TTCTTCATACTTTGCATACAGTTT-GCAG-TTAGATT-AAAT-ATAATACA---TGT---AAA-ACTCCA-AATAAAT--C----AGACA--T-GT-CA-TNTTCATTTTATGAGATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
Reference ( family-501 ) : TATTGTTTTTGTTTTTTCGTATAAATTTCAGGTCCTTCGCCGGCATCTTGCTAGAGCANTAACTAGGAAGCGCCCAACTGGTTATGAGGGTGGACTTATNATACATCAGGACAACGCACCAGCNCACNCGTCGAGAGAAGTGCA-GACG---ACGATTGAGA--TNCAA----ATGGAGGCAGAAGTTCTT----CCA-CATCCGCCGTACTCCCCAGACCTAGCNCCGTGCG---ATTTC--GCACTCTT---TCC-NAAATTAAAGTGCGAA-TTGAAGGGCGAACATTTTAA--------TGACTTAAAA-GAACTTCAAACGGAATCTAAT-TCCA-TTTTGTATTCATACC--CATCGGA-CTGGT--ACAAGCAAGTTTTTCA-TCAGTGG-GTAGAACGNCGCCACAAATGT--AT-AGAAAATAGNGGTGCT-TACTTGTGA--AANAAATTGACGTCGCG---ACGN--CG---C--CTT---A----A----AAT-CTGACCTGCGGCAGATAGGC-GTACATGA-CGTGTTTGAAATACATGTNANTTA-TTTATTNTANTATATAT---T-TTCTTCATACTTTGCATACAGTTT-GCAG-TTAGATT-AAAT-ACNATAAAC--TGN---AAATATTNCA-NATANAT--N----AG--A--T-GT-CG-TNTTCATTTTATGAGATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5192 : TATTGTTTTTGTTTTTTCGTATAAATTTCAGGTCCTTCGCCGGCATCTTGCTAGAGCAATAACTAGGAAGCACCCAACTGGTTATGAGGGTGGACTTATAATACATCAGGACAACGCACCAGCTCACTCGTCGAGAGAAGTGCA-GACG---ACAATTGAAA--TACAA----ATGGAGGCAGAAGTTCTT----CCA-CATCCGCCGTACTCCCCAGATCTCGCACCGTGTG---ATTTC--GCACTCTT---TCC-GAAATTAAAGTGCGAA-TTGAAGGGCAAACATTTTAA--------TAACTTAAAA-GAACTTCAAACGGAATCTAAT-TCCA-TTTTGTATTCATACC--CATCGGA-CTGGT--ACAAGCAAGTTTTTCA-TCAGTGG-ATAGAACGCCACCGCAAATGT--AT-AGAAAATAGCGGTGCT-TACTT-TGA--GAAGAATTGACGTCGCG---ACGT--CG---C--CTTC--A----A----AAT--TGACCTGCGGCACATCACT-GTACATGG-TGTATATCGAATGTATGTAAATTA-TTTGTTATATTGTGTAT---T-TTATTTAAAATTTGTATACAACTT-ACAC-TGAGATT-GAAT-ACTATAAAC--TGA---AAATATTACA-CATATAT--A----AG--A--T-GT-AG-TTTTTATTTTATAGCATGTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5193 : TATTGTTTTTGTTTTTTCGTATAAATTTCAGGTCCTTCGCCGGCATCTTGCTAGAGCACTAACTAGGAAGCACCCAACTGGTTATGAGGGTGGACTTATAATACATCAGGACAACGCACCAGCTCACTCGTCGAGAGAAGTGCA-GACG---ACAATTGAAA--TACAA----ATGGAGGCAGAAGTTCCT----CCA-CATCCGCCGTACTCCCCAGATCTCACACCGTGTG---ATTTC--GCACTCTT---TCC-AAAATTAAAGTGCGAA-TTGAAGGGCAAACATTTTAA--------TAACTTAAAA-GAACTTCAAACGGAATCTAAT-TCCA-TTTTGTATTCATACC--CATCGGA-CTGGT--ACAAGCAAGTTTTTCA-TCAGTGG-GTAGAACGCCACCACAAATGT--AT-AGAAAATAGCGGTGCT-TACTT-TGA--GAAGAATTGACGTCGCG---ACGT--CG---C--CTTC--A----A----AAT--TGACCTGCGGCACATCACT-GTACATGA-TGTATATCGAATGTATGTAAATTA-TTTGTTATATTGTGTAT---T-TTATTTAAAATTTGTATACAACTT-ACAC-TGAGATT-GAAT-ACTATAAAC--TGA---AAATATTACA-CATATAT--A----AG--A--T-GT-AG-TTTTTATTTTATAGCATGTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5194 : TATTGTTTTTGTTTTTTCGTATGAATTTCAGGTCCTTCGCCGGCATCTTGCTAGAGCAATAACTAGGAAGCACCCAACTGGTTATGAGGGTGGACTTATAATACATCAGGACAACGCACCAGCTCACTCGTCGAGAGAAGTGCA-GACG---ACAATTGAAA--TACAA----ATGGAGGCAGAAGTTCTT----CCA-CATCCGCCGTACTCCCCAGATCTCGCACCGTGTG---ATTTC--GCACTCTT---TCC-GAAATTAAAGTGCGAA-TTGAAGGGCAAACATTTTAA--------TAACTTAAAA-GAACTTCAAACGGAATCTAAT-TCCA-TTTTGTATTCATACC--CATCGGA-CTGGT--ACAAGCAAGTTTTTCA-TCAGTGG-GTAGAACGCCACCGCAAATGT--AT-AGAAAATAGCGGTGCT-TACTT-TGA--GAAGAATTGACGTCGCG---ACGT--CG---C--CTTC--A----A----AAT--TGACCTGCGGCACATTACT-GTACATGA-TGTATATCGAATGTATGTAAATTA-TTTGTTATATTGTGTAT---T-TTATTTAAAATTTGTATACAACTT-ACAC-TGAGATTAAAAT-ACTATAAAC--TGA---AAATATTACA-CATATAT--A----AG--A--T-GT-AG-TTTTTATTTTATAGCATGTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5195 : TTCTTATTGTTTTTTCGTATAAATTTCAGGTCCTTCGCCGGCATCTTGCTAGAGCAATAACTAGGAAACACCCAACTGGTTATGAGGGTGGACTTATAATACATCAGGACAACGCACCAGCTCACTCGTCGAGAGAAGTGCA-GACG---ACAATTGAAA--TACAA----ATGGAGGCAGAAGTTCTT----CCA-CATCCACCGTACTCCCCAGATCTCGCACCTTGTG---ATTTC--GCACTCTT---TCC-GAAATTAAAGTGCGAA-TTGAAAGGCAAACATTTTAA--------TAACTTAAAA-GAACTTCAAACGGAATCTAAT-TCCA-TTTTGTATTCATACC--CATCAGA-CTGGT--ACAAGCAAGTTTTTCA-TCAGTGG-GTAGAACGCCACCACAAATGT--AT-AGAAAATAGCGGTGCT-TACTT-TGA--GAAGAATTGACGTCGCG---ACGT--CG---C--CTTC--A----A----AAT--TGACCTGCGGCACATCACT-GTACATGA-TGTATATCGAATGTATGTAAATTA-TTTGTTATATTGTGTAT---T-TTATTTAAAATTTGTATACAACTT-ACAC-TGAGATT-GAAT-ACTATAAAC--TGA---AAATATTACA-CATATAT--A----AG--A--T-GT-AG-TTTTTATTTTATAGCATGTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5196 : AAATTTCAGGTCATTCACTGTTCTCTAGGAAGAGCACTAGCCAGGAAGTGGCCGAATGGTTATGAGGGCGGACTTATCATTCATCGGGATAATGCACCTGCGCACACCTCCAAGGAAGTGCT-GACG---ACAACTGAAA--TCAAA----ATGGAGGCTGAGGTTCTT----TCC-CACCCCCATTACTCTCCAGACCTAGCTCCATGCA---ATTTC--GCACTTTT---TCC------TAAAGTGTGAA-TTGAAGGGAAAACAATTTAA--------CGACTTACAT-GAACTTAGAACAAAAGCTAAC-TCAA-TTTTATATTCATAGC--CATCCGA-CTGGT--TCAGTCAGGTTTATCA-ACAGTGG-ATAGAGTGAC
gi|5197 : TATTACACAT--GGACAATGCACCATCACATACGGC-AGAAACATCCAAGGCG---GTTCTTGAGAAGTGCAACATTAT-----CA-----TCCT----ACAGCATCTTCCTTACAGCCCTGATTTAGCGCTGTGCG---ATTTT--GCCCTCTT---TCCGTGCATTAAAA-AAGAACTTAGAGGGCGCCTATTTGAAGACATATCTGAATTAAAATGTGCTTT--GCAGAATATTGTGTCCA-----G----CATACCATCTTCGGATTTCGTTGACATGTA-------CACTAAATGGTGTA-AACGGTGGCAAAAATGT--AT-AGACAACGGAGGAGAG-TATTT-TGA--GAAAGAGTGAC-TCGa
gi|5198 : TATTACACAT--GGACAATGCACCATCACATACGGC-AGAAACATCCAAGGCG---GTTCTTGAGAAGTGCAACATTAT-----CA-----TCCT----ACAGCATCTTCCTTACAGCCCTGATTTAGCGCTGTGCG---ATTTT--GCCCTCTT---TCCGTGCATTAAAA-AAGAACTTAGAGGGCGCCTATTTGAAGACATATCTGAATTAAAATGTGCTTT--GCAGAATATTGTGTCCA-----G----CATACCATCTTCGGATTTCGTTGACATGTA-------CACTAAATGGTGTA-AACGGTGGCAAAAATGT--AT-AGACAACGGAGGAGAG-TATTT-TGA--GAAAGAGTGAC-TCG
gi|5199 : -GACGTGTACGACTGAGA--TCCAA----ATGAAGGCTGA-GTTCTTTTTCCC----TCCCCCTTAATATCCAGACTTCGCTCCGTACG---ATTTCCAACACTTTTATTTCC-TAAATAAAAGCGTGAG-CTGAAAAGAAAACAATTTGA--------AGACTTACAT-GAACTTCAAAC-GAACGCAAA-TCCATTTTTGTACTCTAACC--CATCGGA-CTGGT--TCAATCGAATTTTTCA-ACAATGC-AAAGAATGACAC-------GG--AT-AG---------------TATTT-TGAAGAAAAAAT--ACTTCGCA---ACGT--TA-------TTGACA----A----AA---CGAACTGCGACAAA-ATGCTATACCCTA-TGTGGTTCAAAGGTAAGTCAAGCA-TGCATTAGACTGTATGT---T-CTCCTTGAATTCTG-ATACGGTTT-ACAG---AG-TG-ATGTGGCTATAAACTTTGT----CACATTCAATCATATCT--A----AC--A----GT-TGCTTTTCATTTTATTAG-TTTGTTTCGG-CGATCTTCTGGATAACTCCTCATA
gi|5200 : AGGAGTTGTT----CCA-CATGCACCATATTCCCCAGACCTAGCACTGTGTG---ACT
gi|5201 : GGAGTTCTT----CCA-CATGCACCATATTCCCCAGACCTAACCCCGTGTGACTATTTC-----TTGTT---CCC-TAAACTGAA
gi|5202 : AGTTCTT----CCA-CATGCACCATATTCCCCAGACCTAGCCCCGTGTGACTATTTC-----TTGTT---CCC-TAAACTGAA
gi|5203 : AGTTCTT----CCA-CATGCACCATATTCCCCAGACCTAGCCCCGTGTGACTATTTC-----TTGTT---CCC-TAAACTGAA
gi|5204 : AGTTCTT----CCA-CATGCACCATATTCCCTAGACCTAGCCCCGTGTGACTATTTC--TTATTC------CC-TAAACTGAA
gi|5205 : TGA-GTGGAGCGACG-----AGTGTGAATGAGAAAAT----------TACTTGTAA--ACTAAATTGACGTCGCA---ACGA--CG---TAACGT---A----A----A-T-CTGGCCTGCGACCGATATGC-GTACGTTG-CATGTTTGAAATACATGTGACTGC-TTTATTTGAATATAAAT---T-TTCTTCATACTTTACATACAGTTT-GCAG-TTAGATT-AAAT-ATAATACA---TGT---AAA-ACTCCA-AATAGAT--G----AAC-A--T-GT-CA-TGTTTATATTATGAGATTTG--TTCA-CGAACTTCTGGATAACCCCTCGTA
gi|5206 : AGAGTAGGGATA-T-TACTTGTGA--AATAAATTAACGTCATG---ACGA--CG---TAACGT---A----A----A-T-CTGACCTGCGGCATATAGGC-GTACATGA-GGTGTTTGAAAAACATGTAACTAT-TTTATTTGAATATATAT---T-TTCTTCATATTTTGCATACGGTTT-GAAG-TTTTATT-AAAT-ATAATACA---TGT---AAA-ACTCCA-AATAAAT--C----GGACA--T-GT-CA-TCTTCATATTATGAGATTTG--TACA-CAAACTTCTGGACAACCCCTCGTA
gi|5207 : GGCGCTGTACTTTTGA--AATAAATTGACATGGGG---ACAA--CG---C--ATC---GT---A----AAT-CTGACCTGCGGCAGATAGGC-GTACATGA-CGTGTTTGAAATACATGT-AGCTATTTTATTTTAATATACAT---T-TCCTTCATATTTTGCGTACGGTTT-GAAG-TTATATT-AAAT-ATAATACA---TGT---AAA-ACTCCA-AATAAAT--C----CGACA--T-GT-CA-TCTTCGTATTATGAGATTTG--TCCA-CGAACTTCTAGATAACCCCTCATA
gi|5208 : T-TACTTGTAA--AATAAATTGACGTTGCA---ATGA--CGTAAC--CT---------A----AAT-CTGGCCTGCGGCAGATAGGC-GTACATGA-CATGTTTGAAATACATGTTTCTGT-TTTATTTAAATATATAT---T-TTCTTCATACTTTGCATACAGTTT-GCAG-TTATATT-AAAT-ATAATACA---TGT---AAA-ACTCCA-AATCAAT--C----AGATA--T-GT-CA-TGTTCATATTATGAGATTTA--TCCA-CGAACTTCTGGATAACCCATCGTA
gi|5209 : T-TACTTGTGA--AATAAATTAATGTTGCA---ACGA--CG--------T---AGCATA----AAT-CTGACCTGCAGCAGATATGC-CTATATGA-CATGTTTGAAATACATGTAACTAT-TTTATTTGAATATATAT---T-TTCTTTATACTTTGTGTACAATTT-GAAG-TTATATT-AAAT-ATAATACA---TGT---AAA-ACT-CA-AATAAAT--C----CGACA--T-GT-CA-CTTTTATATTATGAGATTTG--TCCA-CAAACTTCTTGATAACCCCTCGTA
gi|5210 : T-TACTTGTAA--AATAAATTGACATCGCA---ACGA--CG---TAACGT---A----A----A-T-CTGGCCTGCGGCAGATAGGC-GTACATGA-CATATTT-AAATACATGTTACTGT-TTTATTTGAATATATAT---T-TTCTTGATACTTTGCATACAGTGT-GCCG-TTAGATT-AAAT-ATAATACA---TGT---AAA-ACTCCA-AATAAAT--C----AGACA--T-GT-CA-TGTTCATGTTATGAGGTTTG--TCCA-CGAACTTCTGGATAACCCCTTGTA
gi|5211 : T-TACTTGTGA--AATAAATTGACGTCGCACAAACGTAACG--------T---A----A----AA--CTGGCCTGCTGTAGATAGGC-GTACGTGA-CATGTTTGAAATACATGTTATTGT-TTTATTTAAAAATATAT---T-TTCTTCATACTTTGCATACAGTTT-GCAG-ATATATT-AAAT-ATAGTACA---TGT---AAA-ACTCCA-AATAAATCCA----AC--A--T-GT-CA-TGTTCATATTATGAGATTTG--TCCA-CGAACTTTTGGATAACCCCTCGTA
gi|5212 : T-TACTTGTAA--AATAAATTGACAACGTA---ATGT---------------------A----AAT-CTGGCCTGCGGCAAATAGGC-GTACATGA-CATGTTTGAAATACATGT-ACTGT-TTTATTTAAATATATAT---T-TTCTTCATATTTTGCATACAGTTT-GAAG-TTAGATG-AAAT-ATAATAAA---TGT---AAA-ACTCCA-AATAAAT--C----AGACA--T-GT-CA-TGTTCATATTATGAGATTTG--TCCA-AGAACTTCTGGATAACCCCTCGTA
gi|5213 : T-TACTTGCAA--AAATAATTGACGTCGAG---ACGA--CG-----------------A----AATGTTGATCTGTGGCGGC--GGC-G-GC-TGATCATATGTAGAATACATGCAACTGT-TTCATTTGAATATATATATATATTATTCATAGTTTGCATACAATTT-GCAA-TTAGATT-AAAT-AATATACA---TAT---AAA-ACTTTA-AATAAAT--C----CG--ACTT-GC-CA-TTTTCACTTTATGAGCTTTG--CTCA-CAAACTTCT
gi|5214 : T-TACTTGTAA--AATAAATTGACATCGCA---ACGA--CG---TAACGT---A----A----A-T-CTA----GCGGCAGATAGGC-GTGCATGA-CATGTTTGAAATACATGTTACTGT-TTTATTTGAATATATAT---T-TTCTTCATACTTTGCATACAGTTT-GCTG-TTAGATT-AAAT-ATAATACA---TGT---AAA-ACTCCA-AATAAAT--C----AGACA--T-GT-CA-TGTTCATATTATGAGATTTA--T------AACTTCTGGATAACTCCTCGTA
gi|5215 : T-TATTTGTAA--AATAATTTGCCGTCGCA---ACAA--CG---TAACGT---A----A----A-T-CTGATCTGCGGCATATAGGC-GTACCTGA-CATGTTAGAA----------------------TA-TATATTT---T-TTCATCATACTTTGCATACAGTTT-GCGG-TAAGATT-AGAT-ATAACACA---TAT---AAATCTTTGA--ATAAAT--C----AGACA--T-GT-CA-TGTTCATAATATGATATTTG--TCAA-CAAACTTCTGGATAACCCCTCGTA
gi|5216 : T-TACTTGTAA--AATAAATTGACGTCGAA---ATGG--CG---TAACGT---A----A----A-T-CTGGCCTGTGGCAGGTAGGC-ATACATGA-CATGTTTGAAATACATGTTACTGT-TTTATTTGAATATATAT---T-TTCTTCAGACTTTGCATACAGTTT-GCAG-TTAGATT-AAAT-ATA--AAACA-TGT---AAA-ACTCCA-AATAAAT--C----CGACA--T-GT-CA-TGTTCATATTGT
gi|5217 : AATTGACGTCGCG---ACAA--CA--------T---A----ACATAAAT-CTGACCTACGGCAGATAGGT-GTACATGA-CATGTTTGAAATACATGT-AGCTATTTTATTTTAATATATAT---T-TTCTTCATATTTTGCATAAGGTTT-G-AA-TTATATC-TAAT-ATAATACA---TGT---AAA-ACTCCA-AATAAAT--C----CGACA--T-GT-CA-TCTTCATATTATGAGATTTG--TCCA-CAAACATCTAGATAACCCCTAGTAag
gi|5218 : AATTGATGTCGCA---ACGA--TG---TAACGT---A----A----TAT-CTTGCCAGCGGCAGATAGGC-GTACATGA-CAT--TTGAA-------------------------TATATAT---T-TTCTTCATACTTTGCATACAGTTT-GCAGATAAGAT---AAT-ATTATACA---TGT---AGAAATCA-A-AATAAAT--C----AGACA--T-GT-CA-TGTTCATATTATGAGATTTG--TCC--CGAACTTCTGGATAACCCCTCGTA
gi|5219 : TTTTATTACATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5220 : aaaattgagctgcggcacttcatgtgcatgtacgttactatggttactataacttcataatggttgcatgaaaaacaataaattacttactatagatttgtaatacataaatgtttaagttatgtaatttattcttatgaacgtgtgcacaataattTTTTATAACATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5221 : aaaattgagctgcggcacttcatgtgcatgtacattactatggttactataactttataatggttgcatgaaaaacaataaattacttactatagatttgtaatacataaatgttcaagttatgtaatttatacttatgaatgtgtgcacaataattTTTTATAACATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5222 : aaaattgaactgcggcacttcatgtgcatgtacgttactatggttactataactttataatggttgcatgaaaaacaataaattacttactatagatttgtaatacataaatgtttaagttatgtaatttacacttatgaacgtgtgcacaataattCTGCGGCAGATAGGC-ATAGAAGA-CATGTTTGAAATACATGTTACTGT-TTTATTTGAATATATTT---T-TTCCTCATACTTTGCATACAGTTT-GCAG-TTAGATT-AAAT-ATAATACA---TGT---AAAT-CTCCA-AATAAAT--C----AGACA--T-TT-CA-TGTTCATTATATGATATTTG--TCCA-CGATCTTCTGGATAACCCCTCGTA
gi|5223 : aaaattacgacgtta----A----AAT-CTGGCCTGCGGCAGATAGGT-GTACATGA-CATGTTTGAAATACATGTTACTGT-TTTATTTGAATATATAT---T-TTCTTCATACTTTGCATACAGTTTGGCAG-TTATATT-AAAT-ATAATACA---TGT---AAA-ACTCAA-AATAAAT--C----AGACA--T-GT-CA-TGTCCATATTATGAGATTTG--TCCA-CAAACTTCTGGATAACCCCTCGTA
gi|5224 : CTGCGGCAGGCGGGC-GTACATGA-CATGTTCGAAATACATGTTACTGT-TTTTTTTTAATACATAT---T-GTCTTCATACTTTGCATACAGTTT-GCAG-TTAGATT-TAAT-ATAATACA---TGT---AAATA-TCCA-AATTAAT--T----AGACA--T-GT-TA-TGTTCATAATATGAGATTTG--TCCA-CGAACTTCTGGATAACCCTTCGTA
gi|5225 : TTTACATACAGTTC-ACTG-TT-GAT----AT-ATAACACA---TGG---AAA-ACTTAA-AATAAAT--CTGTAAA--A--TTGT-AA-TTTTTATTTTATAAGATTTG--TCCA-CAAGCTTCAGGATAACCCATCGTA
gi|5226 : TT-ACAG-TTTGATT-AAAT-A-TATAACA--TGA---AAAT-CTCCA-AATAAAT--C----AG--ACAT-GT-CA-TGCTCATTATATGATATTTG--TCCA-CAAACTTCTGGATAACCCCTCGTA
gi|5227 : ATTTTATTTAATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5228 : aatacttaagttgtgaaaaatatagctatgtacttgcgtaaatatagAAT-ACT-TAAGT--TGTGAAAAATATAGC--GATGCAT--T-----------T-G--CA-TATAGATTTTATTAAATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5229 : ATTATATTAAATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5230 : aatacttaagttgtgaaaaatatagttatgtacttgcataaatatagATTTTATCAAATTCG--TCCA-TGAACTTCTGGATAACCCCTCGTA
gi|5231 : aatacttaagtttataaaaatatagcaatgtacttgcataagtatggA-AATATAG--C----A---A--T-GTACA-TATGGATTTTATAAAGATTG--TCCA-AGAACTTCTGGATAACCCCTCGTA
gi|5232 : aatacttgagttgtgaaATTTTATTAAATTTG--TCCAACGAACTTCTGGATAACCCCTCGTA
gi|5233 : atacttaagttgtgaaaaatatagctatgcacttgcataaataaagATTTTATTAAATGTG--TCCA-TGAACCTCTGGATAACCCCTCGTA
gi|5234 : taagctgtgcaaaatatagcaatgtacttgcatgaatatggG-TTTTTATTTTATTTGGTTTG--TCCA-CAAACTTCTAGATAACTCCTCGTA
gi|5235 : taTTGATTTTATAAAATGTG--TCTA-TGAAGTCCTGGATAACCCCTCGTA
Alignments
lowQualScore : 1 11 2222 222 111 1 33333333 1 1 11 1 11 1 333 1
lowQualScore : 0 1 4 1 1 7 0 888 33 0 1111 2 6666 6 5 3 0 1 1 111 000 1 555 99 5 0 0 66666666 0 5 0 3 5 3 33 0 33 5 0 0 8 1 1 5555 0 0 2 3 2 5 2 9 22 1 1 33 888 44 8 7 44 1 1 4 1 3 3333 0 0 333 1 22 1 1 1 3333 1 5 6 1 222 1 1 1 1 0 0 11 1
lowQualScore : . . . . . . . ... .. . .... . .... . . . . . . ... ... . ... .. . . . ........ . . . . . . .. . .. . . . . . . .... . . . . . . . . .. . . .. ... .. . . .. . . . . . .... . . ... . .. . . . .... . . . . ... . . . . . . .. .
lowQualScore : 6 9 3 9 0 9 0 888 88 8 2222 5 5555 2 1 8 2 0 1 555 555 0 888 99 1 2 0 22222222 0 1 0 2 0 2 88 0 88 1 2 0 9 1 0 8888 1 7 4 9 5 0 1 7 99 9 1 33 888 66 4 9 11 8 8 0 0 4 0000 8 1 222 8 55 7 7 7 5555 7 0 7 6 888 5 5 0 8 5 8 66 1
consensus : TATTGTTTTTGTTTTTTCGTATAAATTTCAGGTCCTTCGCCGGCATCTTGCTAGAGCAATAACTAGGAAGCACCCAACTGGTTATGAGGGTGGACTTATAATACATCAGGACAACGCACCAGCTCACNCGTCGAGAGAAGTGCA-GACG---ACAATTGAAA--TACAA----ATGGAGGCAGAAGTTCTT----CCA-CATCCGCCGTACTCCCCAGACCTAGCNCCGTGCG---ATTTC--GCACTCTT---TCC-TAAATTAAAGTGCGAA-TTGAAGGGCAAACATTTTAA--------TGACTTAAAA-GAACTTCAAACGGAATCTAAT-TCCATTTT-GTATTCATACC--CATCGGA-CTGGT--ACAAGCAAGTTTTTCA-TCAGTGG-GTAGAACGNCGC-CGCAAATGTATAGAAAATAGCGGTGCT-TACTTGTGA--AATAAATTGACGTCGCGACGA-CGTAAC-GT-AAAAT-CTGGCCTGCGGCAGATAGGC-GTACATGA-CGTGTTTGAAATACATGTNA--C-TGTTTTATTTGAATATATAT---T-TTCT--TCATACTTTGCATACAGTTT-GCAGTTA-GAT-TAAA----TATAATAC-A-TGTAAA-ACTCCAAATAA-ATC---AGACATGT-CA-TNTTCATTTTATGAGATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
Reference ( family-501 ) : TATTGTTTTTGTTTTTTCGTATAAATTTCAGGTCCTTCGCCGGCATCTTGCTAGAGCAATAACTAGGAAGCACCCAACTGGTTATGAGGGTGGACTTATAATACATCAGGACAACGCACCAGCTCACNCGTCGAGAGAAGTGCA-GACG---ACAATTGAAA--TACAA----ATGGAGGCAGAAGTTCTT----CCA-CATCCGCCGTACTCCCCAGACCTAGCNCCGTGCG---ATTTC--GCACTCTT---TCC-TAAATTAAAGTGCGAA-TTGAAGGGCAAACATTTTAA--------TGACTTAAAA-GAACTTCAAACGGAATCTAAT-TCCATTTT-GTATTCATACC--CATCGGA-CTGGT--ACAAGCAAGTTTTTCA-TCAGTGG-GTAGAACGNCGC-CGCAAATGTATAGAAAATAGCGGTGCT-TACTTGTGA--AATAAATTGACGTCGCGACGA-CGC--C-NT-AAAAT-CTGGCCTGCGGCAGATAGGC-GTACATGA-CGTGTTTGAAATACATGTNA--C-TGTTTTATTTGAATATATAT---T-TTCT--TCATACTTTGCATACAGTTT-GCAGTTA-GAT-TAAA----TATAATAC-A-TGTAAA-ACTCCAAATAA-ATC---AGACATGT-CA-TNTTCATTTTATGAGATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5192 : TATTGTTTTTGTTTTTTCGTATAAATTTCAGGTCCTTCGCCGGCATCTTGCTAGAGCAATAACTAGGAAGCACCCAACTGGTTATGAGGGTGGACTTATAATACATCAGGACAACGCACCAGCTCACTCGTCGAGAGAAGTGCA-GACG---ACAATTGAAA--TACAA----ATGGAGGCAGAAGTTCTT----CCA-CATCCGCCGTACTCCCCAGATCTCGCACCGTGTG---ATTTC--GCACTCTT---TCC-GAAATTAAAGTGCGAA-TTGAAGGGCAAACATTTTAA--------TAACTTAAAA-GAACTTCAAACGGAATCTAAT-TCCATTTT-GTATTCATACC--CATCGGA-CTGGT--ACAAGCAAGTTTTTCA-TCAGTGG-ATAGAACGCCAC-CGCAAATGTATAGAAAATAGCGGTGCT-TACTT-TGA--GAAGAATTGACGTCGCGACGT-CGC--C-TTCAAAAT--TGACCTGCGGCACATCACT-GTACATGG-TGTATATCGAATGTATGTAA--A-TTATTTGTTATATTGTGTAT---T-TTAT--TTAAAATTTGTATACAACTT-ACACTGA-GAT-TGAA----TACTATAA-ACTGAAAATATTACACATAT-ATA---AG--ATGT-AG-TTTTTATTTTATAGCATGTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5193 : TATTGTTTTTGTTTTTTCGTATAAATTTCAGGTCCTTCGCCGGCATCTTGCTAGAGCACTAACTAGGAAGCACCCAACTGGTTATGAGGGTGGACTTATAATACATCAGGACAACGCACCAGCTCACTCGTCGAGAGAAGTGCA-GACG---ACAATTGAAA--TACAA----ATGGAGGCAGAAGTTCCT----CCA-CATCCGCCGTACTCCCCAGATCTCACACCGTGTG---ATTTC--GCACTCTT---TCC-AAAATTAAAGTGCGAA-TTGAAGGGCAAACATTTTAA--------TAACTTAAAA-GAACTTCAAACGGAATCTAAT-TCCATTTT-GTATTCATACC--CATCGGA-CTGGT--ACAAGCAAGTTTTTCA-TCAGTGG-GTAGAACGCCAC-CACAAATGTATAGAAAATAGCGGTGCT-TACTT-TGA--GAAGAATTGACGTCGCGACGT-CGC--C-TTCAAAAT--TGACCTGCGGCACATCACT-GTACATGA-TGTATATCGAATGTATGTAA--A-TTATTTGTTATATTGTGTAT---T-TTAT--TTAAAATTTGTATACAACTT-ACACTGA-GAT-TGAA----TACTATAA-ACTGAAAATATTACACATAT-ATA---AG--ATGT-AG-TTTTTATTTTATAGCATGTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5194 : TATTGTTTTTGTTTTTTCGTATGAATTTCAGGTCCTTCGCCGGCATCTTGCTAGAGCAATAACTAGGAAGCACCCAACTGGTTATGAGGGTGGACTTATAATACATCAGGACAACGCACCAGCTCACTCGTCGAGAGAAGTGCA-GACG---ACAATTGAAA--TACAA----ATGGAGGCAGAAGTTCTT----CCA-CATCCGCCGTACTCCCCAGATCTCGCACCGTGTG---ATTTC--GCACTCTT---TCC-GAAATTAAAGTGCGAA-TTGAAGGGCAAACATTTTAA--------TAACTTAAAA-GAACTTCAAACGGAATCTAAT-TCCATTTT-GTATTCATACC--CATCGGA-CTGGT--ACAAGCAAGTTTTTCA-TCAGTGG-GTAGAACGCCAC-CGCAAATGTATAGAAAATAGCGGTGCT-TACTT-TGA--GAAGAATTGACGTCGCGACGT-CGC--C-TTCAAAAT--TGACCTGCGGCACATTACT-GTACATGA-TGTATATCGAATGTATGTAA--A-TTATTTGTTATATTGTGTAT---T-TTAT--TTAAAATTTGTATACAACTT-ACACTGA-GAT-TAAAATACTATAA-AC---TGAAAATATTACACATAT-ATA---AG--ATGT-AG-TTTTTATTTTATAGCATGTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5195 : TTCTTATTGTTTTTTCGTATAAATTTCAGGTCCTTCGCCGGCATCTTGCTAGAGCAATAACTAGGAAACACCCAACTGGTTATGAGGGTGGACTTATAATACATCAGGACAACGCACCAGCTCACTCGTCGAGAGAAGTGCA-GACG---ACAATTGAAA--TACAA----ATGGAGGCAGAAGTTCTT----CCA-CATCCACCGTACTCCCCAGATCTCGCACCTTGTG---ATTTC--GCACTCTT---TCC-GAAATTAAAGTGCGAA-TTGAAAGGCAAACATTTTAA--------TAACTTAAAA-GAACTTCAAACGGAATCTAAT-TCCATTTT-GTATTCATACC--CATCAGA-CTGGT--ACAAGCAAGTTTTTCA-TCAGTGG-GTAGAACGCCAC-CACAAATGTATAGAAAATAGCGGTGCT-TACTT-TGA--GAAGAATTGACGTCGCGACGT-CGC--C-TTCAAAAT--TGACCTGCGGCACATCACT-GTACATGA-TGTATATCGAATGTATGTAA--A-TTATTTGTTATATTGTGTAT---T-TTAT--TTAAAATTTGTATACAACTT-ACACTGA-GAT-TGAA----TACTATAA-ACTGAAAATATTACACATAT-ATA---AG--ATGT-AG-TTTTTATTTTATAGCATGTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5196 : AAATTTCAGGTCATTCACTGTTCTCTAGGAAGAGCACTAGCCAGGAAGTGGCCGAATGGTTATGAGGGCGGACTTATCATTCATCGGGATAATGCACCTGCGCACACCTCCAAGGAAGTGCT-GACG---ACAACTGAAA--TCAAA----ATGGAGGCTGAGGTTCTT----TCC-CACCCCCATTACTCTCCAGACCTAGCTCCATGCA---ATTTC--GCACTTTT---TCC------TAAAGTGTGAA-TTGAAGGGAAAACAATTTAA--------CGACTTACAT-GAACTTAGAACAAAAGCTAAC-TCAATTTT-ATATTCATAGC--CATCCGA-CTGGT--TCAGTCAGGTTTATCA-ACAGTGG-ATAGAGTGAC
gi|5197 : TATTACACAT--GGACAATGCACCATCACATACGGC-AGAAACATCCAAGGCG---GTTCTTGAGAAGTGCAACATTAT-----CA-----TCCT----ACAGCATCTTCCTTACAGCCCTGATTTAGCGCTGTGCG---ATTTT--GCCCTCTT---TCCGTGCATTAAAA-AAGAACTTAGAGGGCGCCTATTTGAAGACATATCTGAATTAAAATGTGCTTT--GCAGAATATTGTGTCCA-----G----CATACCATCTTCGGATTTCGTTGACATGTA-------CACTAAATGGTGTA-AACGGTGG-CAAAAATGTATAGACAACGGAGGAGAG-TATTT-TGA--GAAAGAGTGAC-TCGa
gi|5198 : TATTACACAT--GGACAATGCACCATCACATACGGC-AGAAACATCCAAGGCG---GTTCTTGAGAAGTGCAACATTAT-----CA-----TCCT----ACAGCATCTTCCTTACAGCCCTGATTTAGCGCTGTGCG---ATTTT--GCCCTCTT---TCCGTGCATTAAAA-AAGAACTTAGAGGGCGCCTATTTGAAGACATATCTGAATTAAAATGTGCTTT--GCAGAATATTGTGTCCA-----G----CATACCATCTTCGGATTTCGTTGACATGTA-------CACTAAATGGTGTA-AACGGTGG-CAAAAATGTATAGACAACGGAGGAGAG-TATTT-TGA--GAAAGAGTGAC-TCG
gi|5199 : -GACGTGTACGACTGAGA--TCCAA----ATGAAGGCTGA-GTTCTTTTTCCC----TCCCCCTTAATATCCAGACTTCGCTCCGTACG---ATTTCCAACACTTTTATTTCC-TAAATAAAAGCGTGAG-CTGAAAAGAAAACAATTTGA--------AGACTTACAT-GAACTTCAAACG-AACGCAAA-TCCATTTTTGTACTCTAACC--CATCGGA-CTGGT--TCAATCGAATTTTTCA-ACAATGC-AAAGAATGACAC--------GGATAG---------------TATTT-TGAAGAAAAAAT--ACTTCGCAACGT-TAT--TGAC-AAAA---CGAACTGCGACAAA-ATGCTATACCCTA-TGTGGTTCAAAGGTAAGTCAAGCATG---CATTAGACTGTATGT---T-CTCC--TTGAATTCTG-ATACGGTTT-ACAGAGT-GATGTGGC----TATAA-ACTT-TGTCAC-ATTC--AATCATATC---TAACA-GT-TGCTTTTCATTTTATTAG-TTTGTTTCGG-CGATCTTCTGGATAACTCCTCATA
gi|5200 : AGGAGTTGTT----CCA-CATGCACCATATTCCCCAGACCTAGCACTGTGTG---ACT
gi|5201 : GGAGTTCTT----CCA-CATGCACCATATTCCCCAGACCTAACCCCGTGTGACTATTTC-----TTGTT---CCC-TAAACTGAA
gi|5202 : AGTTCTT----CCA-CATGCACCATATTCCCCAGACCTAGCCCCGTGTGACTATTTC-----TTGTT---CCC-TAAACTGAA
gi|5203 : AGTTCTT----CCA-CATGCACCATATTCCCCAGACCTAGCCCCGTGTGACTATTTC-----TTGTT---CCC-TAAACTGAA
gi|5204 : AGTTCTT----CCA-CATGCACCATATTCCCTAGACCTAGCCCCGTGTGACTATTTC--TTATTC------CC-TAAACTGAA
gi|5205 : TGA-GTGGAGCGACGAGTGTGAATG---AGAAAAT----------TACTTGTAA--ACTAAATTGACGTCGCAACGA-CGTAAC-GT-AAA-T-CTGGCCTGCGACCGATATGC-GTACGTTG-CATGTTTGAAATACATGTGA--C-TGCTTTATTTGAATATAAAT---T-TTCT--TCATACTTTACATACAGTTT-GCAGTTA-GAT-TAAA----TATAATAC-A-TGTAAA-ACTCCAAATAG-ATG---A-ACATGT-CA-TGTTTATATTATGAGATTTG--TTCA-CGAACTTCTGGATAACCCCTCGTA
gi|5206 : AGAGTAGGGATA-T-TACTTGTGA--AATAAATTAACGTCATGACGA-CGTAAC-GT-AAA-T-CTGACCTGCGGCATATAGGC-GTACATGA-GGTGTTTGAAAAACATGTAA--C-TATTTTATTTGAATATATAT---T-TTCT--TCATATTTTGCATACGGTTT-GAAGTTT-TAT-TAAA----TATAATAC-A-TGTAAA-ACTCCAAATAA-ATC---GGACATGT-CA-TCTTCATATTATGAGATTTG--TACA-CAAACTTCTGGACAACCCCTCGTA
gi|5207 : GGCGCTGTACTTTTGA--AATAAATTGACATGGGGACAA-CGCATC-GT-AAA-T-CTGACCTGCGGCAGATAGGC-GTACATGA-CGTGTTTGAAATACATGTAG--C-TATTTTATTTTAATATACAT---T-TCCT--TCATATTTTGCGTACGGTTT-GAAGTTA-TAT-TAAA----TATAATAC-A-TGTAAA-ACTCCAAATAA-ATC---CGACATGT-CA-TCTTCGTATTATGAGATTTG--TCCA-CGAACTTCTAGATAACCCCTCATA
gi|5208 : T-TACTTGTAA--AATAAATTGACGTTGCAATGA-CGTAAC-CT-AAA-T-CTGGCCTGCGGCAGATAGGC-GTACATGA-CATGTTTGAAATACATGTTT--C-TGTTTTATTTAAATATATAT---T-TTCT--TCATACTTTGCATACAGTTT-GCAGTTA-TAT-TAAA----TATAATAC-A-TGTAAA-ACTCCAAATCA-ATC---AGATATGT-CA-TGTTCATATTATGAGATTTA--TCCA-CGAACTTCTGGATAACCCATCGTA
gi|5209 : T-TACTTGTGA--AATAAATTAATGTTGCAACGA-CGTAGC-AT-AAA-T-CTGACCTGCAGCAGATATGC-CTATATGA-CATGTTTGAAATACATGTAA--C-TATTTTATTTGAATATATAT---T-TTCT--TTATACTTTGTGTACAATTT-GAAGTTA-TAT-TAAA----TATAATAC-A-TGTAAA-ACT-CAAATAA-ATC---CGACATGT-CA-CTTTTATATTATGAGATTTG--TCCA-CAAACTTCTTGATAACCCCTCGTA
gi|5210 : T-TACTTGTAA--AATAAATTGACATCGCAACGA-CGTAAC-GT-AAA-T-CTGGCCTGCGGCAGATAGGC-GTACATGA-CATATTT-AAATACATGTTA--C-TGTTTTATTTGAATATATAT---T-TTCT--TGATACTTTGCATACAGTGT-GCCGTTA-GAT-TAAA----TATAATAC-A-TGTAAA-ACTCCAAATAA-ATC---AGACATGT-CA-TGTTCATGTTATGAGGTTTG--TCCA-CGAACTTCTGGATAACCCCTTGTA
gi|5211 : T-TACTTGTGA--AATAAATTGACGTCGC-ACAAACGTAAC-GT-AAAA--CTGGCCTGCTGTAGATAGGC-GTACGTGA-CATGTTTGAAATACATGTTA--T-TGTTTTATTTAAAAATATAT---T-TTCT--TCATACTTTGCATACAGTTT-GCAGATA-TAT-TAAA----TATAGTAC-A-TGTAAA-ACTCCAAATAA-ATC---CAACATGT-CA-TGTTCATATTATGAGATTTG--TCCA-CGAACTTTTGGATAACCCCTCGTA
gi|5212 : T-TACTTGTAA--AATAAATTGACAACGTAATG----------T-AAA-T-CTGGCCTGCGGCAAATAGGC-GTACATGA-CATGTTTGAAATACATGT-A--C-TGTTTTATTTAAATATATAT---T-TTCT--TCATATTTTGCATACAGTTT-GAAGTTA-GAT-GAAA----TATAATAA-A-TGTAAA-ACTCCAAATAA-ATC---AGACATGT-CA-TGTTCATATTATGAGATTTG--TCCA-AGAACTTCTGGATAACCCCTCGTA
gi|5213 : T-TACTTGCAA--AAATAATTGACGTCGAGACGA-CG---------AAATGTTGATCTGTGGCGGC--GGC-G-GC-TGATCATATGTAGAATACATGCAA--C-TGTTTCATTTGAATATATATATATATTAT--TCATAGTTTGCATACAATTT-GCAATTA-GAT-TAAA----TAATATAC-A-TATAAA-ACTTTAAATAA-ATC---CGACTTGC-CA-TTTTCACTTTATGAGCTTTG--CTCA-CAAACTTCT
gi|5214 : T-TACTTGTAA--AATAAATTGACATCGCAACGA-CGTAAC-GT-AAA-T-CTAGC----GGCAGATAGGC-GTGCATGA-CATGTTTGAAATACATGTTA--C-TGTTTTATTTGAATATATAT---T-TTCT--TCATACTTTGCATACAGTTT-GCTGTTA-GAT-TAAA----TATAATAC-A-TGTAAA-ACTCCAAATAA-ATC---AGACATGT-CA-TGTTCATATTATGAGATTTA--T------AACTTCTGGATAACTCCTCGTA
gi|5215 : T-TATTTGTAA--AATAATTTGCCGTCGCAACAA-CGTAAC-GT-AAA-T-CTGATCTGCGGCATATAGGC-GTACCTGA-C-------------ATGTTA--------------GAATATATAT---T-TTTTCATCATACTTTGCATACAGTTT-GCGGTAA-GAT-TAGA----TATAACAC-A-TATAAA-TCTTTGAATAA-ATC---AGACATGT-CA-TGTTCATAATATGATATTTG--TCAA-CAAACTTCTGGATAACCCCTCGTA
gi|5216 : T-TACTTGTAA--AATAAATTGACGTCGAAATGG-CGTAAC-GT-AAA-T-CTGGCCTGTGGCAGGTAGGC-ATACATGA-CATGTTTGAAATACATGTTA--C-TGTTTTATTTGAATATATAT---T-TTCT--TCAGACTTTGCATACAGTTT-GCAGTTA-GAT-TAAA----TATAAAAC-A-TGTAAA-ACTCCAAATAA-ATC---CGACATGT-CA-TGTTCATATTGT
gi|5217 : AATTGACGTCGCGACAA-CATAAC-AT-AAA-T-CTGACCTACGGCAGATAGGT-GTACATGA-CATGTTTGAAATACATGTAG--C-TATTTTATTTTAATATATAT---T-TTCT--TCATATTTTGCATAAGGTTT-G-AATTA-TAT-CTAA----TATAATAC-A-TGTAAA-ACTCCAAATAA-ATC---CGACATGT-CA-TCTTCATATTATGAGATTTG--TCCA-CAAACATCTAGATAACCCCTAGTAag
gi|5218 : AATTGATGTCGCAACGA-TGTAAC-GT-AATAT-CTTGCCAGCGGCAGATAGGC-GTACATGA-C-----------------------------ATTTGAATATATAT---T-TTCT--TCATACTTTGCATACAGTTT-GCAGATAAGAT---AA----TATTATAC-A-TGTAGA-AATCAAAATAA-ATC---AGACATGT-CA-TGTTCATATTATGAGATTTG--TCC--CGAACTTCTGGATAACCCCTCGTA
gi|5219 : TTTTATTACATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5220 : aaaattgagctgcggcacttcatgtgcatgtacgttactatggttactataacttcataatggttgcatgaaaaacaataaattacttactatagatttgtaatacataaatgtttaagttatgtaatttattcttatgaacgtgtgcacaataattTTTTATAACATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5221 : aaaattgagctgcggcacttcatgtgcatgtacattactatggttactataactttataatggttgcatgaaaaacaataaattacttactatagatttgtaatacataaatgttcaagttatgtaatttatacttatgaatgtgtgcacaataattTTTTATAACATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5222 : aaaattgaactgcggcacttcatgtgcatgtacgttactatggttactataactttataatggttgcatgaaaaacaataaattacttactatagatttgtaatacataaatgtttaagttatgtaatttacacttatgaacgtgtgcacaataattCTGCGGCAGATAGGC-ATAGAAGA-CATGTTTGAAATACATGTTA--C-TGTTTTATTTGAATATATTT---T-TTCC--TCATACTTTGCATACAGTTT-GCAGTTA-GAT-TAAA----TATAATAC-A-TGTAAA-TCTCCAAATAA-ATC---AGACATTT-CA-TGTTCATTATATGATATTTG--TCCA-CGATCTTCTGGATAACCCCTCGTA
gi|5223 : aaaattacgacgttaAAAT-CTGGCCTGCGGCAGATAGGT-GTACATGA-CATGTTTGAAATACATGTTA--C-TGTTTTATTTGAATATATAT---T-TTCT--TCATACTTTGCATACAGTTTGGCAGTTA-TAT-TAAA----TATAATAC-A-TGTAAA-ACTCAAAATAA-ATC---AGACATGT-CA-TGTCCATATTATGAGATTTG--TCCA-CAAACTTCTGGATAACCCCTCGTA
gi|5224 : CTGCGGCAGGCGGGC-GTACATGA-CATGTTCGAAATACATGTTA--C-TGTTTTTTTTTAATACATAT---T-GTCT--TCATACTTTGCATACAGTTT-GCAGTTA-GAT-TTAA----TATAATAC-A-TGTAAA-TATCCAAATTA-ATT---AGACATGT-TA-TGTTCATAATATGAGATTTG--TCCA-CGAACTTCTGGATAACCCTTCGTA
gi|5225 : TTTACATACAGTTC-ACTGTT--GAT----A----TATAACAC-A-TGGAAA-ACTTAAAATAA-ATCTGTAAAATTGT-AA-TTTTTATTTTATAAGATTTG--TCCA-CAAGCTTCAGGATAACCCATCGTA
gi|5226 : TT-ACAGTTT-GAT-TAAA----TATATAAC-A-TGAAAA-TCTCCAAATAA-ATC---AGACATGT-CA-TGCTCATTATATGATATTTG--TCCA-CAAACTTCTGGATAACCCCTCGTA
gi|5227 : ATTTTATTTAATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5228 : aatacttaagttgtgaaaaatatagctatgtacttgcgtaaatatag-CA-TATAGATTTTATTAAATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5229 : aatacttaagttgtgaaaaatatagcgatgcatttgATTATATTAAATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5230 : aatacttaagttgtgaaaaatatagttatgtacttgcataaatatagATTTTATCAAATTCG--TCCA-TGAACTTCTGGATAACCCCTCGTA
gi|5231 : aatacttaagtttataaaaatatagcaatgtacttgcataagtatggAAATAT-AGC---A---ATGTACA-TATGGATTTTATAAAGATTG--TCCA-AGAACTTCTGGATAACCCCTCGTA
gi|5232 : aatacttgagttgtgaaATTTTATTAAATTTG--TCCAACGAACTTCTGGATAACCCCTCGTA
gi|5233 : atacttaagttgtgaaaaatatagctatgcacttgcataaataaagATTTTATTAAATGTG--TCCA-TGAACCTCTGGATAACCCCTCGTA
gi|5234 : taagctgtgcaaaatatagcaatgtacttgcatgaatatgg-TTTTTATTTTATTTGGTTTG--TCCA-CAAACTTCTAGATAACTCCTCGTA
gi|5235 : tagTTGATTTTATAAAATGTG--TCTA-TGAAGTCCTGGATAACCCCTCGTA
Alignments
lowQualScore : 1 11 2222 222 111 1 33333333 1 1 11 1 11 1 1
lowQualScore : 0 1 4 1 1 7 0 888 33 0 1111 2 6666 6 5 3 0 1 1 111 000 1 555 99 5 0 0 66666666 0 5 0 3 5 3 33 0 33 5 0 0 8 1 1 5555 0 0 2 3 2 5 2 9 22 1 1 22 2 2 0 8 9 2 1 1 4 1 3 3333 0 0 333 1 22 1 1 1 3333 1 5 6 1 222 1 1 1 1 0 0 11 1
lowQualScore : . . . . . . . ... .. . .... . .... . . . . . . ... ... . ... .. . . . ........ . . . . . . .. . .. . . . . . . .... . . . . . . . . .. . . .. . . . . . . . . . . . .... . . ... . .. . . . .... . . . . ... . . . . . . .. .
lowQualScore : 6 9 3 9 0 9 0 888 88 8 2222 5 5555 2 1 8 2 0 1 555 555 0 888 99 1 2 0 22222222 0 1 0 2 0 2 88 0 88 1 2 0 9 1 0 8888 1 7 4 9 5 0 1 7 99 9 5 99 1 1 9 4 2 5 8 8 0 0 4 0000 8 1 222 8 55 7 7 7 5555 7 0 7 6 888 5 5 0 8 5 8 66 1
consensus : TATTGTTTTTGTTTTTTCGTATAAATTTCAGGTCCTTCGCCGGCATCTTGCTAGAGCAATAACTAGGAAGCACCCAACTGGTTATGAGGGTGGACTTATAATACATCAGGACAACGCACCAGCTCACNCGTCGAGAGAAGTGCA-GACG---ACAATTGAAA--TACAA----ATGGAGGCAGAAGTTCTT----CCA-CATCCGCCGTACTCCCCAGACCTAGCNCCGTGCG---ATTTC--GCACTCTT---TCC-TAAATTAAAGTGCGAA-TTGAAGGGCAAACATTTTAA--------TGACTTAAAA-GAACTTCAAACGGAATCTAAT-TCCATTTT-GTATTCATACC--CATCGGA-CTGGT--ACAAGCAAGTTTTTCA-TCAGTGG-GTAGAACGNCGC-CGCAAATGTATAGAAAATAGCGGTGCT-TACTTGTGA--AATAAATTGACGTCGCGACG--A-CGTAACGT-AAAATCTGGCCTGCGGCAGATAGGC-GTACATGA-CGTGTTTGAAATACATGTNA--C-TGTTTTATTTGAATATATAT---T-TTCT--TCATACTTTGCATACAGTTT-GCAGTTA-GAT-TAAA----TATAATAC-A-TGTAAA-ACTCCAAATAA-ATC---AGACATGT-CA-TNTTCATTTTATGAGATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
Reference ( family-501 ) : TATTGTTTTTGTTTTTTCGTATAAATTTCAGGTCCTTCGCCGGCATCTTGCTAGAGCAATAACTAGGAAGCACCCAACTGGTTATGAGGGTGGACTTATAATACATCAGGACAACGCACCAGCTCACNCGTCGAGAGAAGTGCA-GACG---ACAATTGAAA--TACAA----ATGGAGGCAGAAGTTCTT----CCA-CATCCGCCGTACTCCCCAGACCTAGCNCCGTGCG---ATTTC--GCACTCTT---TCC-TAAATTAAAGTGCGAA-TTGAAGGGCAAACATTTTAA--------TGACTTAAAA-GAACTTCAAACGGAATCTAAT-TCCATTTT-GTATTCATACC--CATCGGA-CTGGT--ACAAGCAAGTTTTTCA-TCAGTGG-GTAGAACGNCGC-CGCAAATGTATAGAAAATAGCGGTGCT-TACTTGTGA--AATAAATTGACGTCGCGACG--A-CGTAACGT-AAAATCTGGCCTGCGGCAGATAGGC-GTACATGA-CGTGTTTGAAATACATGTNA--C-TGTTTTATTTGAATATATAT---T-TTCT--TCATACTTTGCATACAGTTT-GCAGTTA-GAT-TAAA----TATAATAC-A-TGTAAA-ACTCCAAATAA-ATC---AGACATGT-CA-TNTTCATTTTATGAGATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5192 : TATTGTTTTTGTTTTTTCGTATAAATTTCAGGTCCTTCGCCGGCATCTTGCTAGAGCAATAACTAGGAAGCACCCAACTGGTTATGAGGGTGGACTTATAATACATCAGGACAACGCACCAGCTCACTCGTCGAGAGAAGTGCA-GACG---ACAATTGAAA--TACAA----ATGGAGGCAGAAGTTCTT----CCA-CATCCGCCGTACTCCCCAGATCTCGCACCGTGTG---ATTTC--GCACTCTT---TCC-GAAATTAAAGTGCGAA-TTGAAGGGCAAACATTTTAA--------TAACTTAAAA-GAACTTCAAACGGAATCTAAT-TCCATTTT-GTATTCATACC--CATCGGA-CTGGT--ACAAGCAAGTTTTTCA-TCAGTGG-ATAGAACGCCAC-CGCAAATGTATAGAAAATAGCGGTGCT-TACTT-TGA--GAAGAATTGACGTCGCGACG--T-CGC--CTTCAAAAT-TGACCTGCGGCACATCACT-GTACATGG-TGTATATCGAATGTATGTAA--A-TTATTTGTTATATTGTGTAT---T-TTAT--TTAAAATTTGTATACAACTT-ACACTGA-GAT-TGAA----TACTATAA-ACTGAAAATATTACACATAT-ATA---AG--ATGT-AG-TTTTTATTTTATAGCATGTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5193 : TATTGTTTTTGTTTTTTCGTATAAATTTCAGGTCCTTCGCCGGCATCTTGCTAGAGCACTAACTAGGAAGCACCCAACTGGTTATGAGGGTGGACTTATAATACATCAGGACAACGCACCAGCTCACTCGTCGAGAGAAGTGCA-GACG---ACAATTGAAA--TACAA----ATGGAGGCAGAAGTTCCT----CCA-CATCCGCCGTACTCCCCAGATCTCACACCGTGTG---ATTTC--GCACTCTT---TCC-AAAATTAAAGTGCGAA-TTGAAGGGCAAACATTTTAA--------TAACTTAAAA-GAACTTCAAACGGAATCTAAT-TCCATTTT-GTATTCATACC--CATCGGA-CTGGT--ACAAGCAAGTTTTTCA-TCAGTGG-GTAGAACGCCAC-CACAAATGTATAGAAAATAGCGGTGCT-TACTT-TGA--GAAGAATTGACGTCGCGACG--T-CGC--CTTCAAAAT-TGACCTGCGGCACATCACT-GTACATGA-TGTATATCGAATGTATGTAA--A-TTATTTGTTATATTGTGTAT---T-TTAT--TTAAAATTTGTATACAACTT-ACACTGA-GAT-TGAA----TACTATAA-ACTGAAAATATTACACATAT-ATA---AG--ATGT-AG-TTTTTATTTTATAGCATGTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5194 : TATTGTTTTTGTTTTTTCGTATGAATTTCAGGTCCTTCGCCGGCATCTTGCTAGAGCAATAACTAGGAAGCACCCAACTGGTTATGAGGGTGGACTTATAATACATCAGGACAACGCACCAGCTCACTCGTCGAGAGAAGTGCA-GACG---ACAATTGAAA--TACAA----ATGGAGGCAGAAGTTCTT----CCA-CATCCGCCGTACTCCCCAGATCTCGCACCGTGTG---ATTTC--GCACTCTT---TCC-GAAATTAAAGTGCGAA-TTGAAGGGCAAACATTTTAA--------TAACTTAAAA-GAACTTCAAACGGAATCTAAT-TCCATTTT-GTATTCATACC--CATCGGA-CTGGT--ACAAGCAAGTTTTTCA-TCAGTGG-GTAGAACGCCAC-CGCAAATGTATAGAAAATAGCGGTGCT-TACTT-TGA--GAAGAATTGACGTCGCGACG--T-CGC--CTTCAAAAT-TGACCTGCGGCACATTACT-GTACATGA-TGTATATCGAATGTATGTAA--A-TTATTTGTTATATTGTGTAT---T-TTAT--TTAAAATTTGTATACAACTT-ACACTGA-GAT-TAAAATACTATAA-AC---TGAAAATATTACACATAT-ATA---AG--ATGT-AG-TTTTTATTTTATAGCATGTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5195 : TTCTTATTGTTTTTTCGTATAAATTTCAGGTCCTTCGCCGGCATCTTGCTAGAGCAATAACTAGGAAACACCCAACTGGTTATGAGGGTGGACTTATAATACATCAGGACAACGCACCAGCTCACTCGTCGAGAGAAGTGCA-GACG---ACAATTGAAA--TACAA----ATGGAGGCAGAAGTTCTT----CCA-CATCCACCGTACTCCCCAGATCTCGCACCTTGTG---ATTTC--GCACTCTT---TCC-GAAATTAAAGTGCGAA-TTGAAAGGCAAACATTTTAA--------TAACTTAAAA-GAACTTCAAACGGAATCTAAT-TCCATTTT-GTATTCATACC--CATCAGA-CTGGT--ACAAGCAAGTTTTTCA-TCAGTGG-GTAGAACGCCAC-CACAAATGTATAGAAAATAGCGGTGCT-TACTT-TGA--GAAGAATTGACGTCGCGACG--T-CGC--CTTCAAAAT-TGACCTGCGGCACATCACT-GTACATGA-TGTATATCGAATGTATGTAA--A-TTATTTGTTATATTGTGTAT---T-TTAT--TTAAAATTTGTATACAACTT-ACACTGA-GAT-TGAA----TACTATAA-ACTGAAAATATTACACATAT-ATA---AG--ATGT-AG-TTTTTATTTTATAGCATGTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5196 : AAATTTCAGGTCATTCACTGTTCTCTAGGAAGAGCACTAGCCAGGAAGTGGCCGAATGGTTATGAGGGCGGACTTATCATTCATCGGGATAATGCACCTGCGCACACCTCCAAGGAAGTGCT-GACG---ACAACTGAAA--TCAAA----ATGGAGGCTGAGGTTCTT----TCC-CACCCCCATTACTCTCCAGACCTAGCTCCATGCA---ATTTC--GCACTTTT---TCC------TAAAGTGTGAA-TTGAAGGGAAAACAATTTAA--------CGACTTACAT-GAACTTAGAACAAAAGCTAAC-TCAATTTT-ATATTCATAGC--CATCCGA-CTGGT--TCAGTCAGGTTTATCA-ACAGTGG-ATAGAGTGAC
gi|5197 : TATTACACAT--GGACAATGCACCATCACATACGGC-AGAAACATCCAAGGCG---GTTCTTGAGAAGTGCAACATTAT-----CA-----TCCT----ACAGCATCTTCCTTACAGCCCTGATTTAGCGCTGTGCG---ATTTT--GCCCTCTT---TCCGTGCATTAAAA-AAGAACTTAGAGGGCGCCTATTTGAAGACATATCTGAATTAAAATGTGCTTT--GCAGAATATTGTGTCCA-----G----CATACCATCTTCGGATTTCGTTGACATGTA-------CACTAAATGGTGTA-AACGGTGG-CAAAAATGTATAGACAACGGAGGAGAG-TATTT-TGA--GAAAGAGTGAC-TCGa
gi|5198 : TATTACACAT--GGACAATGCACCATCACATACGGC-AGAAACATCCAAGGCG---GTTCTTGAGAAGTGCAACATTAT-----CA-----TCCT----ACAGCATCTTCCTTACAGCCCTGATTTAGCGCTGTGCG---ATTTT--GCCCTCTT---TCCGTGCATTAAAA-AAGAACTTAGAGGGCGCCTATTTGAAGACATATCTGAATTAAAATGTGCTTT--GCAGAATATTGTGTCCA-----G----CATACCATCTTCGGATTTCGTTGACATGTA-------CACTAAATGGTGTA-AACGGTGG-CAAAAATGTATAGACAACGGAGGAGAG-TATTT-TGA--GAAAGAGTGAC-TCG
gi|5199 : -GACGTGTACGACTGAGA--TCCAA----ATGAAGGCTGA-GTTCTTTTTCCC----TCCCCCTTAATATCCAGACTTCGCTCCGTACG---ATTTCCAACACTTTTATTTCC-TAAATAAAAGCGTGAG-CTGAAAAGAAAACAATTTGA--------AGACTTACAT-GAACTTCAAACG-AACGCAAA-TCCATTTTTGTACTCTAACC--CATCGGA-CTGGT--TCAATCGAATTTTTCA-ACAATGC-AAAGAATGACAC--------GGATAG---------------TATTT-TGAAGAAAAAAT--ACTTCGCAACGTTA-T-TGAC---AAAA--CGAACTGCGACAAA-ATGCTATACCCTA-TGTGGTTCAAAGGTAAGTCAAGCATG---CATTAGACTGTATGT---T-CTCC--TTGAATTCTG-ATACGGTTT-ACAGAGT-GATGTGGC----TATAA-ACTT-TGTCAC-ATTC--AATCATATC---TAACA-GT-TGCTTTTCATTTTATTAG-TTTGTTTCGG-CGATCTTCTGGATAACTCCTCATA
gi|5200 : AGGAGTTGTT----CCA-CATGCACCATATTCCCCAGACCTAGCACTGTGTG---ACT
gi|5201 : GGAGTTCTT----CCA-CATGCACCATATTCCCCAGACCTAACCCCGTGTGACTATTTC-----TTGTT---CCC-TAAACTGAA
gi|5202 : AGTTCTT----CCA-CATGCACCATATTCCCCAGACCTAGCCCCGTGTGACTATTTC-----TTGTT---CCC-TAAACTGAA
gi|5203 : AGTTCTT----CCA-CATGCACCATATTCCCCAGACCTAGCCCCGTGTGACTATTTC-----TTGTT---CCC-TAAACTGAA
gi|5204 : AGTTCTT----CCA-CATGCACCATATTCCCTAGACCTAGCCCCGTGTGACTATTTC--TTATTC------CC-TAAACTGAA
gi|5205 : TGA-GTGGAGCGACGAGTGTGAATG---AGAAAAT----------TACTTGTAA--ACTAAATTGACGTCGCAACG--A-CGTAACGT-AAA-TCTGGCCTGCGACCGATATGC-GTACGTTG-CATGTTTGAAATACATGTGA--C-TGCTTTATTTGAATATAAAT---T-TTCT--TCATACTTTACATACAGTTT-GCAGTTA-GAT-TAAA----TATAATAC-A-TGTAAA-ACTCCAAATAG-ATG---A-ACATGT-CA-TGTTTATATTATGAGATTTG--TTCA-CGAACTTCTGGATAACCCCTCGTA
gi|5206 : AGAGTAGGGATA-T-TACTTGTGA--AATAAATTAACGTCATGACG--A-CGTAACGT-AAA-TCTGACCTGCGGCATATAGGC-GTACATGA-GGTGTTTGAAAAACATGTAA--C-TATTTTATTTGAATATATAT---T-TTCT--TCATATTTTGCATACGGTTT-GAAGTTT-TAT-TAAA----TATAATAC-A-TGTAAA-ACTCCAAATAA-ATC---GGACATGT-CA-TCTTCATATTATGAGATTTG--TACA-CAAACTTCTGGACAACCCCTCGTA
gi|5207 : GGCGCTGTACTTTTGA--AATAAATTGACATGGGGACA--A-CGCATCGT-AAA-TCTGACCTGCGGCAGATAGGC-GTACATGA-CGTGTTTGAAATACATGTAG--C-TATTTTATTTTAATATACAT---T-TCCT--TCATATTTTGCGTACGGTTT-GAAGTTA-TAT-TAAA----TATAATAC-A-TGTAAA-ACTCCAAATAA-ATC---CGACATGT-CA-TCTTCGTATTATGAGATTTG--TCCA-CGAACTTCTAGATAACCCCTCATA
gi|5208 : T-TACTTGTAA--AATAAATTGACGTTGCAATG--A-CGTAACCT-AAA-TCTGGCCTGCGGCAGATAGGC-GTACATGA-CATGTTTGAAATACATGTTT--C-TGTTTTATTTAAATATATAT---T-TTCT--TCATACTTTGCATACAGTTT-GCAGTTA-TAT-TAAA----TATAATAC-A-TGTAAA-ACTCCAAATCA-ATC---AGATATGT-CA-TGTTCATATTATGAGATTTA--TCCA-CGAACTTCTGGATAACCCATCGTA
gi|5209 : T-TACTTGTGA--AATAAATTAATGTTGCAACG--A-CGTAGCAT-AAA-TCTGACCTGCAGCAGATATGC-CTATATGA-CATGTTTGAAATACATGTAA--C-TATTTTATTTGAATATATAT---T-TTCT--TTATACTTTGTGTACAATTT-GAAGTTA-TAT-TAAA----TATAATAC-A-TGTAAA-ACT-CAAATAA-ATC---CGACATGT-CA-CTTTTATATTATGAGATTTG--TCCA-CAAACTTCTTGATAACCCCTCGTA
gi|5210 : T-TACTTGTAA--AATAAATTGACATCGCAACG--A-CGTAACGT-AAA-TCTGGCCTGCGGCAGATAGGC-GTACATGA-CATATTT-AAATACATGTTA--C-TGTTTTATTTGAATATATAT---T-TTCT--TGATACTTTGCATACAGTGT-GCCGTTA-GAT-TAAA----TATAATAC-A-TGTAAA-ACTCCAAATAA-ATC---AGACATGT-CA-TGTTCATGTTATGAGGTTTG--TCCA-CGAACTTCTGGATAACCCCTTGTA
gi|5211 : T-TACTTGTGA--AATAAATTGACGTCGC-ACA--AACGTAACGT-AAAA-CTGGCCTGCTGTAGATAGGC-GTACGTGA-CATGTTTGAAATACATGTTA--T-TGTTTTATTTAAAAATATAT---T-TTCT--TCATACTTTGCATACAGTTT-GCAGATA-TAT-TAAA----TATAGTAC-A-TGTAAA-ACTCCAAATAA-ATC---CAACATGT-CA-TGTTCATATTATGAGATTTG--TCCA-CGAACTTTTGGATAACCCCTCGTA
gi|5212 : T-TACTTGTAA--AATAAATTGACA----------A-CGTAATGT-AAA-TCTGGCCTGCGGCAAATAGGC-GTACATGA-CATGTTTGAAATACATGT-A--C-TGTTTTATTTAAATATATAT---T-TTCT--TCATATTTTGCATACAGTTT-GAAGTTA-GAT-GAAA----TATAATAA-A-TGTAAA-ACTCCAAATAA-ATC---AGACATGT-CA-TGTTCATATTATGAGATTTG--TCCA-AGAACTTCTGGATAACCCCTCGTA
gi|5213 : T-TACTTGCAA--AAATAATTGACGTCGAGACG--A-CGAAATGT-------TGATCTGTGGCGGC--GGC-G-GC-TGATCATATGTAGAATACATGCAA--C-TGTTTCATTTGAATATATATATATATTAT--TCATAGTTTGCATACAATTT-GCAATTA-GAT-TAAA----TAATATAC-A-TATAAA-ACTTTAAATAA-ATC---CGACTTGC-CA-TTTTCACTTTATGAGCTTTG--CTCA-CAAACTTCT
gi|5214 : T-TACTTGTAA--AATAAATTGACATCGCAACG--A-CGTAACGT-AAA-TCTAGC----GGCAGATAGGC-GTGCATGA-CATGTTTGAAATACATGTTA--C-TGTTTTATTTGAATATATAT---T-TTCT--TCATACTTTGCATACAGTTT-GCTGTTA-GAT-TAAA----TATAATAC-A-TGTAAA-ACTCCAAATAA-ATC---AGACATGT-CA-TGTTCATATTATGAGATTTA--T------AACTTCTGGATAACTCCTCGTA
gi|5215 : T-TATTTGTAA--AATAATTTGCCGTCGCAACA--A-CGTAACGT-AAA-TCTGATCTGCGGCATATAGGC-GTACCTGA-C-------------ATGTTA--------------GAATATATAT---T-TTTTCATCATACTTTGCATACAGTTT-GCGGTAA-GAT-TAGA----TATAACAC-A-TATAAA-TCTTTGAATAA-ATC---AGACATGT-CA-TGTTCATAATATGATATTTG--TCAA-CAAACTTCTGGATAACCCCTCGTA
gi|5216 : T-TACTTGTAA--AATAAATTGACGTCGAAATG--G-CGTAACGT-AAA-TCTGGCCTGTGGCAGGTAGGC-ATACATGA-CATGTTTGAAATACATGTTA--C-TGTTTTATTTGAATATATAT---T-TTCT--TCAGACTTTGCATACAGTTT-GCAGTTA-GAT-TAAA----TATAAAAC-A-TGTAAA-ACTCCAAATAA-ATC---CGACATGT-CA-TGTTCATATTGT
gi|5217 : AATTGACGTCGCGACA--A-CATAACAT-AAA-TCTGACCTACGGCAGATAGGT-GTACATGA-CATGTTTGAAATACATGTAG--C-TATTTTATTTTAATATATAT---T-TTCT--TCATATTTTGCATAAGGTTT-G-AATTA-TAT-CTAA----TATAATAC-A-TGTAAA-ACTCCAAATAA-ATC---CGACATGT-CA-TCTTCATATTATGAGATTTG--TCCA-CAAACATCTAGATAACCCCTAGTAag
gi|5218 : AATTGATGTCGCAACG--A-TGTAACGT-AATATCTTGCCAGCGGCAGATAGGC-GTACATGA-C-----------------------------ATTTGAATATATAT---T-TTCT--TCATACTTTGCATACAGTTT-GCAGATAAGAT---AA----TATTATAC-A-TGTAGA-AATCAAAATAA-ATC---AGACATGT-CA-TGTTCATATTATGAGATTTG--TCC--CGAACTTCTGGATAACCCCTCGTA
gi|5219 : TTTTATTACATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5220 : aaaattgagctgcggcacttcatgtgcatgtacgttactatggttactataacttcataatggttgcatgaaaaacaataaattacttactatagatttgtaatacataaatgtttaagttatgtaatttattcttatgaacgtgtgcacaataattTTTTATAACATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5221 : aaaattgagctgcggcacttcatgtgcatgtacattactatggttactataactttataatggttgcatgaaaaacaataaattacttactatagatttgtaatacataaatgttcaagttatgtaatttatacttatgaatgtgtgcacaataattTTTTATAACATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5222 : aaaattgaactgcggcacttcatgtgcatgtacgttactatggttactataactttataatggttgcatgaaaaacaataaattacttactatagatttgtaatacataaatgtttaagttatgtaatttacacttatgaacgtgtgcacaataattCTGCGGCAGATAGGC-ATAGAAGA-CATGTTTGAAATACATGTTA--C-TGTTTTATTTGAATATATTT---T-TTCC--TCATACTTTGCATACAGTTT-GCAGTTA-GAT-TAAA----TATAATAC-A-TGTAAA-TCTCCAAATAA-ATC---AGACATTT-CA-TGTTCATTATATGATATTTG--TCCA-CGATCTTCTGGATAACCCCTCGTA
gi|5223 : aaaattacgacgttaAAATCTGGCCTGCGGCAGATAGGT-GTACATGA-CATGTTTGAAATACATGTTA--C-TGTTTTATTTGAATATATAT---T-TTCT--TCATACTTTGCATACAGTTTGGCAGTTA-TAT-TAAA----TATAATAC-A-TGTAAA-ACTCAAAATAA-ATC---AGACATGT-CA-TGTCCATATTATGAGATTTG--TCCA-CAAACTTCTGGATAACCCCTCGTA
gi|5224 : CTGCGGCAGGCGGGC-GTACATGA-CATGTTCGAAATACATGTTA--C-TGTTTTTTTTTAATACATAT---T-GTCT--TCATACTTTGCATACAGTTT-GCAGTTA-GAT-TTAA----TATAATAC-A-TGTAAA-TATCCAAATTA-ATT---AGACATGT-TA-TGTTCATAATATGAGATTTG--TCCA-CGAACTTCTGGATAACCCTTCGTA
gi|5225 : TTTACATACAGTTC-ACTGTT--GAT----A----TATAACAC-A-TGGAAA-ACTTAAAATAA-ATCTGTAAAATTGT-AA-TTTTTATTTTATAAGATTTG--TCCA-CAAGCTTCAGGATAACCCATCGTA
gi|5226 : TT-ACAGTTT-GAT-TAAA----TATATAAC-A-TGAAAA-TCTCCAAATAA-ATC---AGACATGT-CA-TGCTCATTATATGATATTTG--TCCA-CAAACTTCTGGATAACCCCTCGTA
gi|5227 : ATTTTATTTAATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5228 : aatacttaagttgtgaaaaatatagctatgtacttgcgtaaatatag-CA-TATAGATTTTATTAAATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5229 : aatacttaagttgtgaaaaatatagcgatgcatttgATTATATTAAATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5230 : aatacttaagttgtgaaaaatatagttatgtacttgcataaatatagATTTTATCAAATTCG--TCCA-TGAACTTCTGGATAACCCCTCGTA
gi|5231 : aatacttaagtttataaaaatatagcaatgtacttgcataagtatggAAATAT-AGC---A---ATGTACA-TATGGATTTTATAAAGATTG--TCCA-AGAACTTCTGGATAACCCCTCGTA
gi|5232 : aatacttgagttgtgaaATTTTATTAAATTTG--TCCAACGAACTTCTGGATAACCCCTCGTA
gi|5233 : atacttaagttgtgaaaaatatagctatgcacttgcataaataaagATTTTATTAAATGTG--TCCA-TGAACCTCTGGATAACCCCTCGTA
gi|5234 : taagctgtgcaaaatatagcaatgtacttgcatgaatatgg-TTTTTATTTTATTTGGTTTG--TCCA-CAAACTTCTAGATAACTCCTCGTA
gi|5235 : tagTTGATTTTATAAAATGTG--TCTA-TGAAGTCCTGGATAACCCCTCGTA
Alignments
lowQualScore : 1 11 2222 222 111 1 33333333 1 1 11 1 11 1 1
lowQualScore : 0 1 4 1 1 7 0 888 33 0 1111 2 6666 6 5 3 0 1 1 111 000 1 555 99 5 0 0 66666666 0 5 0 3 5 3 33 0 33 5 0 0 8 1 1 5555 0 0 2 3 2 5 2 9 22 1 1 22 2 2 0 8 9 2 1 1 4 1 3 3333 0 0 333 1 22 1 1 1 3333 1 5 6 1 222 1 1 1 1 0 0 11 1
lowQualScore : . . . . . . . ... .. . .... . .... . . . . . . ... ... . ... .. . . . ........ . . . . . . .. . .. . . . . . . .... . . . . . . . . .. . . .. . . . . . . . . . . . .... . . ... . .. . . . .... . . . . ... . . . . . . .. .
lowQualScore : 6 9 3 9 0 9 0 888 88 8 2222 5 5555 2 1 8 2 0 1 555 555 0 888 99 1 2 0 22222222 0 1 0 2 0 2 88 0 88 1 2 0 9 1 0 8888 1 7 4 9 5 0 1 7 99 9 5 99 1 1 9 4 2 5 8 8 0 0 4 0000 8 1 222 8 55 7 7 7 5555 7 0 7 6 888 5 5 0 8 5 8 66 1
consensus : TATTGTTTTTGTTTTTTCGTATAAATTTCAGGTCCTTCGCCGGCATCTTGCTAGAGCAATAACTAGGAAGCACCCAACTGGTTATGAGGGTGGACTTATAATACATCAGGACAACGCACCAGCTCACNCGTCGAGAGAAGTGCA-GACG---ACAATTGAAA--TACAA----ATGGAGGCAGAAGTTCTT----CCA-CATCCGCCGTACTCCCCAGACCTAGCNCCGTGCG---ATTTC--GCACTCTT---TCC-TAAATTAAAGTGCGAA-TTGAAGGGCAAACATTTTAA--------TGACTTAAAA-GAACTTCAAACGGAATCTAAT-TCCATTTT-GTATTCATACC--CATCGGA-CTGGT--ACAAGCAAGTTTTTCA-TCAGTGG-GTAGAACGNCGC-CGCAAATGTATAGAAAATAGCGGTGCT-TACTTGTGA--AATAAATTGACGTCGCGACG--A-CGTAACGT-AAAATCTGGCCTGCGGCAGATAGGC-GTACATGA-CGTGTTTGAAATACATGTNA--C-TGTTTTATTTGAATATATAT---T-TTCT--TCATACTTTGCATACAGTTT-GCAGTTA-GAT-TAAA----TATAATAC-A-TGTAAA-ACTCCAAATAA-ATC---AGACATGT-CA-TNTTCATTTTATGAGATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
Reference ( family-501 ) : TATTGTTTTTGTTTTTTCGTATAAATTTCAGGTCCTTCGCCGGCATCTTGCTAGAGCAATAACTAGGAAGCACCCAACTGGTTATGAGGGTGGACTTATAATACATCAGGACAACGCACCAGCTCACNCGTCGAGAGAAGTGCA-GACG---ACAATTGAAA--TACAA----ATGGAGGCAGAAGTTCTT----CCA-CATCCGCCGTACTCCCCAGACCTAGCNCCGTGCG---ATTTC--GCACTCTT---TCC-TAAATTAAAGTGCGAA-TTGAAGGGCAAACATTTTAA--------TGACTTAAAA-GAACTTCAAACGGAATCTAAT-TCCATTTT-GTATTCATACC--CATCGGA-CTGGT--ACAAGCAAGTTTTTCA-TCAGTGG-GTAGAACGNCGC-CGCAAATGTATAGAAAATAGCGGTGCT-TACTTGTGA--AATAAATTGACGTCGCGACG--A-CGTAACGT-AAAATCTGGCCTGCGGCAGATAGGC-GTACATGA-CGTGTTTGAAATACATGTNA--C-TGTTTTATTTGAATATATAT---T-TTCT--TCATACTTTGCATACAGTTT-GCAGTTA-GAT-TAAA----TATAATAC-A-TGTAAA-ACTCCAAATAA-ATC---AGACATGT-CA-TNTTCATTTTATGAGATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5192 : TATTGTTTTTGTTTTTTCGTATAAATTTCAGGTCCTTCGCCGGCATCTTGCTAGAGCAATAACTAGGAAGCACCCAACTGGTTATGAGGGTGGACTTATAATACATCAGGACAACGCACCAGCTCACTCGTCGAGAGAAGTGCA-GACG---ACAATTGAAA--TACAA----ATGGAGGCAGAAGTTCTT----CCA-CATCCGCCGTACTCCCCAGATCTCGCACCGTGTG---ATTTC--GCACTCTT---TCC-GAAATTAAAGTGCGAA-TTGAAGGGCAAACATTTTAA--------TAACTTAAAA-GAACTTCAAACGGAATCTAAT-TCCATTTT-GTATTCATACC--CATCGGA-CTGGT--ACAAGCAAGTTTTTCA-TCAGTGG-ATAGAACGCCAC-CGCAAATGTATAGAAAATAGCGGTGCT-TACTT-TGA--GAAGAATTGACGTCGCGACG--T-CGC--CTTCAAAAT-TGACCTGCGGCACATCACT-GTACATGG-TGTATATCGAATGTATGTAA--A-TTATTTGTTATATTGTGTAT---T-TTAT--TTAAAATTTGTATACAACTT-ACACTGA-GAT-TGAA----TACTATAA-ACTGAAAATATTACACATAT-ATA---AG--ATGT-AG-TTTTTATTTTATAGCATGTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5193 : TATTGTTTTTGTTTTTTCGTATAAATTTCAGGTCCTTCGCCGGCATCTTGCTAGAGCACTAACTAGGAAGCACCCAACTGGTTATGAGGGTGGACTTATAATACATCAGGACAACGCACCAGCTCACTCGTCGAGAGAAGTGCA-GACG---ACAATTGAAA--TACAA----ATGGAGGCAGAAGTTCCT----CCA-CATCCGCCGTACTCCCCAGATCTCACACCGTGTG---ATTTC--GCACTCTT---TCC-AAAATTAAAGTGCGAA-TTGAAGGGCAAACATTTTAA--------TAACTTAAAA-GAACTTCAAACGGAATCTAAT-TCCATTTT-GTATTCATACC--CATCGGA-CTGGT--ACAAGCAAGTTTTTCA-TCAGTGG-GTAGAACGCCAC-CACAAATGTATAGAAAATAGCGGTGCT-TACTT-TGA--GAAGAATTGACGTCGCGACG--T-CGC--CTTCAAAAT-TGACCTGCGGCACATCACT-GTACATGA-TGTATATCGAATGTATGTAA--A-TTATTTGTTATATTGTGTAT---T-TTAT--TTAAAATTTGTATACAACTT-ACACTGA-GAT-TGAA----TACTATAA-ACTGAAAATATTACACATAT-ATA---AG--ATGT-AG-TTTTTATTTTATAGCATGTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5194 : TATTGTTTTTGTTTTTTCGTATGAATTTCAGGTCCTTCGCCGGCATCTTGCTAGAGCAATAACTAGGAAGCACCCAACTGGTTATGAGGGTGGACTTATAATACATCAGGACAACGCACCAGCTCACTCGTCGAGAGAAGTGCA-GACG---ACAATTGAAA--TACAA----ATGGAGGCAGAAGTTCTT----CCA-CATCCGCCGTACTCCCCAGATCTCGCACCGTGTG---ATTTC--GCACTCTT---TCC-GAAATTAAAGTGCGAA-TTGAAGGGCAAACATTTTAA--------TAACTTAAAA-GAACTTCAAACGGAATCTAAT-TCCATTTT-GTATTCATACC--CATCGGA-CTGGT--ACAAGCAAGTTTTTCA-TCAGTGG-GTAGAACGCCAC-CGCAAATGTATAGAAAATAGCGGTGCT-TACTT-TGA--GAAGAATTGACGTCGCGACG--T-CGC--CTTCAAAAT-TGACCTGCGGCACATTACT-GTACATGA-TGTATATCGAATGTATGTAA--A-TTATTTGTTATATTGTGTAT---T-TTAT--TTAAAATTTGTATACAACTT-ACACTGA-GAT-TAAAATACTATAA-AC---TGAAAATATTACACATAT-ATA---AG--ATGT-AG-TTTTTATTTTATAGCATGTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5195 : TTCTTATTGTTTTTTCGTATAAATTTCAGGTCCTTCGCCGGCATCTTGCTAGAGCAATAACTAGGAAACACCCAACTGGTTATGAGGGTGGACTTATAATACATCAGGACAACGCACCAGCTCACTCGTCGAGAGAAGTGCA-GACG---ACAATTGAAA--TACAA----ATGGAGGCAGAAGTTCTT----CCA-CATCCACCGTACTCCCCAGATCTCGCACCTTGTG---ATTTC--GCACTCTT---TCC-GAAATTAAAGTGCGAA-TTGAAAGGCAAACATTTTAA--------TAACTTAAAA-GAACTTCAAACGGAATCTAAT-TCCATTTT-GTATTCATACC--CATCAGA-CTGGT--ACAAGCAAGTTTTTCA-TCAGTGG-GTAGAACGCCAC-CACAAATGTATAGAAAATAGCGGTGCT-TACTT-TGA--GAAGAATTGACGTCGCGACG--T-CGC--CTTCAAAAT-TGACCTGCGGCACATCACT-GTACATGA-TGTATATCGAATGTATGTAA--A-TTATTTGTTATATTGTGTAT---T-TTAT--TTAAAATTTGTATACAACTT-ACACTGA-GAT-TGAA----TACTATAA-ACTGAAAATATTACACATAT-ATA---AG--ATGT-AG-TTTTTATTTTATAGCATGTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5196 : AAATTTCAGGTCATTCACTGTTCTCTAGGAAGAGCACTAGCCAGGAAGTGGCCGAATGGTTATGAGGGCGGACTTATCATTCATCGGGATAATGCACCTGCGCACACCTCCAAGGAAGTGCT-GACG---ACAACTGAAA--TCAAA----ATGGAGGCTGAGGTTCTT----TCC-CACCCCCATTACTCTCCAGACCTAGCTCCATGCA---ATTTC--GCACTTTT---TCC------TAAAGTGTGAA-TTGAAGGGAAAACAATTTAA--------CGACTTACAT-GAACTTAGAACAAAAGCTAAC-TCAATTTT-ATATTCATAGC--CATCCGA-CTGGT--TCAGTCAGGTTTATCA-ACAGTGG-ATAGAGTGAC
gi|5197 : TATTACACAT--GGACAATGCACCATCACATACGGC-AGAAACATCCAAGGCG---GTTCTTGAGAAGTGCAACATTAT-----CA-----TCCT----ACAGCATCTTCCTTACAGCCCTGATTTAGCGCTGTGCG---ATTTT--GCCCTCTT---TCCGTGCATTAAAA-AAGAACTTAGAGGGCGCCTATTTGAAGACATATCTGAATTAAAATGTGCTTT--GCAGAATATTGTGTCCA-----G----CATACCATCTTCGGATTTCGTTGACATGTA-------CACTAAATGGTGTA-AACGGTGG-CAAAAATGTATAGACAACGGAGGAGAG-TATTT-TGA--GAAAGAGTGAC-TCGa
gi|5198 : TATTACACAT--GGACAATGCACCATCACATACGGC-AGAAACATCCAAGGCG---GTTCTTGAGAAGTGCAACATTAT-----CA-----TCCT----ACAGCATCTTCCTTACAGCCCTGATTTAGCGCTGTGCG---ATTTT--GCCCTCTT---TCCGTGCATTAAAA-AAGAACTTAGAGGGCGCCTATTTGAAGACATATCTGAATTAAAATGTGCTTT--GCAGAATATTGTGTCCA-----G----CATACCATCTTCGGATTTCGTTGACATGTA-------CACTAAATGGTGTA-AACGGTGG-CAAAAATGTATAGACAACGGAGGAGAG-TATTT-TGA--GAAAGAGTGAC-TCG
gi|5199 : -GACGTGTACGACTGAGA--TCCAA----ATGAAGGCTGA-GTTCTTTTTCCC----TCCCCCTTAATATCCAGACTTCGCTCCGTACG---ATTTCCAACACTTTTATTTCC-TAAATAAAAGCGTGAG-CTGAAAAGAAAACAATTTGA--------AGACTTACAT-GAACTTCAAACG-AACGCAAA-TCCATTTTTGTACTCTAACC--CATCGGA-CTGGT--TCAATCGAATTTTTCA-ACAATGC-AAAGAATGACAC--------GGATAG---------------TATTT-TGAAGAAAAAAT--ACTTCGCAACGTTA-T-TGAC---AAAA--CGAACTGCGACAAA-ATGCTATACCCTA-TGTGGTTCAAAGGTAAGTCAAGCATG---CATTAGACTGTATGT---T-CTCC--TTGAATTCTG-ATACGGTTT-ACAGAGT-GATGTGGC----TATAA-ACTT-TGTCAC-ATTC--AATCATATC---TAACA-GT-TGCTTTTCATTTTATTAG-TTTGTTTCGG-CGATCTTCTGGATAACTCCTCATA
gi|5200 : AGGAGTTGTT----CCA-CATGCACCATATTCCCCAGACCTAGCACTGTGTG---ACT
gi|5201 : GGAGTTCTT----CCA-CATGCACCATATTCCCCAGACCTAACCCCGTGTGACTATTTC-----TTGTT---CCC-TAAACTGAA
gi|5202 : AGTTCTT----CCA-CATGCACCATATTCCCCAGACCTAGCCCCGTGTGACTATTTC-----TTGTT---CCC-TAAACTGAA
gi|5203 : AGTTCTT----CCA-CATGCACCATATTCCCCAGACCTAGCCCCGTGTGACTATTTC-----TTGTT---CCC-TAAACTGAA
gi|5204 : AGTTCTT----CCA-CATGCACCATATTCCCTAGACCTAGCCCCGTGTGACTATTTC--TTATTC------CC-TAAACTGAA
gi|5205 : TGA-GTGGAGCGACGAGTGTGAATG---AGAAAAT----------TACTTGTAA--ACTAAATTGACGTCGCAACG--A-CGTAACGT-AAA-TCTGGCCTGCGACCGATATGC-GTACGTTG-CATGTTTGAAATACATGTGA--C-TGCTTTATTTGAATATAAAT---T-TTCT--TCATACTTTACATACAGTTT-GCAGTTA-GAT-TAAA----TATAATAC-A-TGTAAA-ACTCCAAATAG-ATG---A-ACATGT-CA-TGTTTATATTATGAGATTTG--TTCA-CGAACTTCTGGATAACCCCTCGTA
gi|5206 : AGAGTAGGGATA-T-TACTTGTGA--AATAAATTAACGTCATGACG--A-CGTAACGT-AAA-TCTGACCTGCGGCATATAGGC-GTACATGA-GGTGTTTGAAAAACATGTAA--C-TATTTTATTTGAATATATAT---T-TTCT--TCATATTTTGCATACGGTTT-GAAGTTT-TAT-TAAA----TATAATAC-A-TGTAAA-ACTCCAAATAA-ATC---GGACATGT-CA-TCTTCATATTATGAGATTTG--TACA-CAAACTTCTGGACAACCCCTCGTA
gi|5207 : GGCGCTGTACTTTTGA--AATAAATTGACATGGGGACA--A-CGCATCGT-AAA-TCTGACCTGCGGCAGATAGGC-GTACATGA-CGTGTTTGAAATACATGTAG--C-TATTTTATTTTAATATACAT---T-TCCT--TCATATTTTGCGTACGGTTT-GAAGTTA-TAT-TAAA----TATAATAC-A-TGTAAA-ACTCCAAATAA-ATC---CGACATGT-CA-TCTTCGTATTATGAGATTTG--TCCA-CGAACTTCTAGATAACCCCTCATA
gi|5208 : T-TACTTGTAA--AATAAATTGACGTTGCAATG--A-CGTAACCT-AAA-TCTGGCCTGCGGCAGATAGGC-GTACATGA-CATGTTTGAAATACATGTTT--C-TGTTTTATTTAAATATATAT---T-TTCT--TCATACTTTGCATACAGTTT-GCAGTTA-TAT-TAAA----TATAATAC-A-TGTAAA-ACTCCAAATCA-ATC---AGATATGT-CA-TGTTCATATTATGAGATTTA--TCCA-CGAACTTCTGGATAACCCATCGTA
gi|5209 : T-TACTTGTGA--AATAAATTAATGTTGCAACG--A-CGTAGCAT-AAA-TCTGACCTGCAGCAGATATGC-CTATATGA-CATGTTTGAAATACATGTAA--C-TATTTTATTTGAATATATAT---T-TTCT--TTATACTTTGTGTACAATTT-GAAGTTA-TAT-TAAA----TATAATAC-A-TGTAAA-ACT-CAAATAA-ATC---CGACATGT-CA-CTTTTATATTATGAGATTTG--TCCA-CAAACTTCTTGATAACCCCTCGTA
gi|5210 : T-TACTTGTAA--AATAAATTGACATCGCAACG--A-CGTAACGT-AAA-TCTGGCCTGCGGCAGATAGGC-GTACATGA-CATATTT-AAATACATGTTA--C-TGTTTTATTTGAATATATAT---T-TTCT--TGATACTTTGCATACAGTGT-GCCGTTA-GAT-TAAA----TATAATAC-A-TGTAAA-ACTCCAAATAA-ATC---AGACATGT-CA-TGTTCATGTTATGAGGTTTG--TCCA-CGAACTTCTGGATAACCCCTTGTA
gi|5211 : T-TACTTGTGA--AATAAATTGACGTCGC-ACA--AACGTAACGT-AAAA-CTGGCCTGCTGTAGATAGGC-GTACGTGA-CATGTTTGAAATACATGTTA--T-TGTTTTATTTAAAAATATAT---T-TTCT--TCATACTTTGCATACAGTTT-GCAGATA-TAT-TAAA----TATAGTAC-A-TGTAAA-ACTCCAAATAA-ATC---CAACATGT-CA-TGTTCATATTATGAGATTTG--TCCA-CGAACTTTTGGATAACCCCTCGTA
gi|5212 : T-TACTTGTAA--AATAAATTGACA----------A-CGTAATGT-AAA-TCTGGCCTGCGGCAAATAGGC-GTACATGA-CATGTTTGAAATACATGT-A--C-TGTTTTATTTAAATATATAT---T-TTCT--TCATATTTTGCATACAGTTT-GAAGTTA-GAT-GAAA----TATAATAA-A-TGTAAA-ACTCCAAATAA-ATC---AGACATGT-CA-TGTTCATATTATGAGATTTG--TCCA-AGAACTTCTGGATAACCCCTCGTA
gi|5213 : T-TACTTGCAA--AAATAATTGACGTCGAGACG--A-CGAAATGT-------TGATCTGTGGCGGC--GGC-G-GC-TGATCATATGTAGAATACATGCAA--C-TGTTTCATTTGAATATATATATATATTAT--TCATAGTTTGCATACAATTT-GCAATTA-GAT-TAAA----TAATATAC-A-TATAAA-ACTTTAAATAA-ATC---CGACTTGC-CA-TTTTCACTTTATGAGCTTTG--CTCA-CAAACTTCT
gi|5214 : T-TACTTGTAA--AATAAATTGACATCGCAACG--A-CGTAACGT-AAA-TCTAGC----GGCAGATAGGC-GTGCATGA-CATGTTTGAAATACATGTTA--C-TGTTTTATTTGAATATATAT---T-TTCT--TCATACTTTGCATACAGTTT-GCTGTTA-GAT-TAAA----TATAATAC-A-TGTAAA-ACTCCAAATAA-ATC---AGACATGT-CA-TGTTCATATTATGAGATTTA--T------AACTTCTGGATAACTCCTCGTA
gi|5215 : T-TATTTGTAA--AATAATTTGCCGTCGCAACA--A-CGTAACGT-AAA-TCTGATCTGCGGCATATAGGC-GTACCTGA-C-------------ATGTTA--------------GAATATATAT---T-TTTTCATCATACTTTGCATACAGTTT-GCGGTAA-GAT-TAGA----TATAACAC-A-TATAAA-TCTTTGAATAA-ATC---AGACATGT-CA-TGTTCATAATATGATATTTG--TCAA-CAAACTTCTGGATAACCCCTCGTA
gi|5216 : T-TACTTGTAA--AATAAATTGACGTCGAAATG--G-CGTAACGT-AAA-TCTGGCCTGTGGCAGGTAGGC-ATACATGA-CATGTTTGAAATACATGTTA--C-TGTTTTATTTGAATATATAT---T-TTCT--TCAGACTTTGCATACAGTTT-GCAGTTA-GAT-TAAA----TATAAAAC-A-TGTAAA-ACTCCAAATAA-ATC---CGACATGT-CA-TGTTCATATTGT
gi|5217 : AATTGACGTCGCGACA--A-CATAACAT-AAA-TCTGACCTACGGCAGATAGGT-GTACATGA-CATGTTTGAAATACATGTAG--C-TATTTTATTTTAATATATAT---T-TTCT--TCATATTTTGCATAAGGTTT-G-AATTA-TAT-CTAA----TATAATAC-A-TGTAAA-ACTCCAAATAA-ATC---CGACATGT-CA-TCTTCATATTATGAGATTTG--TCCA-CAAACATCTAGATAACCCCTAGTAag
gi|5218 : AATTGATGTCGCAACG--A-TGTAACGT-AATATCTTGCCAGCGGCAGATAGGC-GTACATGA-C-----------------------------ATTTGAATATATAT---T-TTCT--TCATACTTTGCATACAGTTT-GCAGATAAGAT---AA----TATTATAC-A-TGTAGA-AATCAAAATAA-ATC---AGACATGT-CA-TGTTCATATTATGAGATTTG--TCC--CGAACTTCTGGATAACCCCTCGTA
gi|5219 : TTTTATTACATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5220 : aaaattgagctgcggcacttcatgtgcatgtacgttactatggttactataacttcataatggttgcatgaaaaacaataaattacttactatagatttgtaatacataaatgtttaagttatgtaatttattcttatgaacgtgtgcacaataattTTTTATAACATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5221 : aaaattgagctgcggcacttcatgtgcatgtacattactatggttactataactttataatggttgcatgaaaaacaataaattacttactatagatttgtaatacataaatgttcaagttatgtaatttatacttatgaatgtgtgcacaataattTTTTATAACATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5222 : aaaattgaactgcggcacttcatgtgcatgtacgttactatggttactataactttataatggttgcatgaaaaacaataaattacttactatagatttgtaatacataaatgtttaagttatgtaatttacacttatgaacgtgtgcacaataattCTGCGGCAGATAGGC-ATAGAAGA-CATGTTTGAAATACATGTTA--C-TGTTTTATTTGAATATATTT---T-TTCC--TCATACTTTGCATACAGTTT-GCAGTTA-GAT-TAAA----TATAATAC-A-TGTAAA-TCTCCAAATAA-ATC---AGACATTT-CA-TGTTCATTATATGATATTTG--TCCA-CGATCTTCTGGATAACCCCTCGTA
gi|5223 : aaaattacgacgttaAAATCTGGCCTGCGGCAGATAGGT-GTACATGA-CATGTTTGAAATACATGTTA--C-TGTTTTATTTGAATATATAT---T-TTCT--TCATACTTTGCATACAGTTTGGCAGTTA-TAT-TAAA----TATAATAC-A-TGTAAA-ACTCAAAATAA-ATC---AGACATGT-CA-TGTCCATATTATGAGATTTG--TCCA-CAAACTTCTGGATAACCCCTCGTA
gi|5224 : CTGCGGCAGGCGGGC-GTACATGA-CATGTTCGAAATACATGTTA--C-TGTTTTTTTTTAATACATAT---T-GTCT--TCATACTTTGCATACAGTTT-GCAGTTA-GAT-TTAA----TATAATAC-A-TGTAAA-TATCCAAATTA-ATT---AGACATGT-TA-TGTTCATAATATGAGATTTG--TCCA-CGAACTTCTGGATAACCCTTCGTA
gi|5225 : TTTACATACAGTTC-ACTGTT--GAT----A----TATAACAC-A-TGGAAA-ACTTAAAATAA-ATCTGTAAAATTGT-AA-TTTTTATTTTATAAGATTTG--TCCA-CAAGCTTCAGGATAACCCATCGTA
gi|5226 : TT-ACAGTTT-GAT-TAAA----TATATAAC-A-TGAAAA-TCTCCAAATAA-ATC---AGACATGT-CA-TGCTCATTATATGATATTTG--TCCA-CAAACTTCTGGATAACCCCTCGTA
gi|5227 : ATTTTATTTAATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5228 : aatacttaagttgtgaaaaatatagctatgtacttgcgtaaatatag-CA-TATAGATTTTATTAAATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5229 : aatacttaagttgtgaaaaatatagcgatgcatttgATTATATTAAATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5230 : aatacttaagttgtgaaaaatatagttatgtacttgcataaatatagATTTTATCAAATTCG--TCCA-TGAACTTCTGGATAACCCCTCGTA
gi|5231 : aatacttaagtttataaaaatatagcaatgtacttgcataagtatggAAATAT-AGC---A---ATGTACA-TATGGATTTTATAAAGATTG--TCCA-AGAACTTCTGGATAACCCCTCGTA
gi|5232 : aatacttgagttgtgaaATTTTATTAAATTTG--TCCAACGAACTTCTGGATAACCCCTCGTA
gi|5233 : atacttaagttgtgaaaaatatagctatgcacttgcataaataaagATTTTATTAAATGTG--TCCA-TGAACCTCTGGATAACCCCTCGTA
gi|5234 : taagctgtgcaaaatatagcaatgtacttgcatgaatatgg-TTTTTATTTTATTTGGTTTG--TCCA-CAAACTTCTAGATAACTCCTCGTA
gi|5235 : tagTTGATTTTATAAAATGTG--TCTA-TGAAGTCCTGGATAACCCCTCGTA
blockSeqs : A C T T G A TGT AG CATT G TTTC G G G A T ACT CAA A ATT GT T C GACATATC T A G T T T AT T TG A C T G C GTGT A C T C G G AG A G TT A G C A C T T G A AGCA ATA A CA G A G ATAC T C T T TGT A C T T TT A
blockSeqs : A C T T G A . AG CATT G . G G G A T ACT G A . GT T C GACATATC T A G T . T AT T TG A C T G C CAC A C T C . G . A G . . A C A C . . G A A . . . . . . . . C T . . . . T T . .
blockSeqs : A C T T G . . . . G . . A G A T ACT G A . A T . . . A . T . T . . . A . . G C CGC A C T C . T . A G . . A C A C . . G A A . . . . . . . . . T . . . . T T . .
blockSeqs : C C G A C . . . . G . . C T T C ACT G A . G T . . . G . T . T . . . G . . G A CAC G A A A . G . A A . . A . A C . . G C A . . . . . . . . . . . . . . T T . .
blockSeqs : T . A A . . . . . G . . T T G C . G C . G C . . . A . T . T . . . A . . G G CAA G A A A . G . A A . . A . A C . . A G C . . . . . . . . . . . . . . G A . .
blockSeqs : T . A A . . . . . . . . T T G C . G C . T . . . . . . . . . . . . . . . G G CAA A G T C . G . A G . . A . A C . . G A C . . . . . . . . . . . . . . C A . .
blockSeqs : . . . . . . . C T T C . G A . T . . . . . . . . . . . . . . . . A . . . C . . G . T G . . A . A C . . G A C . . . . . . . . . . . . . . C A . .
blockSeqs : . . A A A T . T A . T . . A . . . . . G . T A . . A . . C . . A T C . . . . . . . . . . . . . . G A . .
blockSeqs : . . A A C T . . . . T . . . G . T A . . A . . C . . A A C . . . . . . . . . . . . . . T A . .
blockSeqs : . . A A C T . . . . T . G . T A . . A . . C . . A T C . . . . . . . . . . . . . . G G . .
blockSeqs : . . A A C T . . . . . . G . T G . . A . . C . . A T T . . . . . . . . . . . . . . G A . .
blockSeqs : . . A A C T . . G . T A . . A . . C . . A A C . . . . . . . . . . . . . . G A . .
blockSeqs : . . . T A . . A . . C . . A T C . . . . . . . . . . . . . . T T . .
blockSeqs : . . . T A . . A . . C . . A T C . . . . . . . . . . . . . . G A . .
blockSeqs : . . . A G . . A . . . . . A T C . . . . . . . . . . . . . . G A . .
blockSeqs : . . . T A . . . . . . . . A A C . . . . . . . . . . . . . . G A . .
blockSeqs : . . . T . . . . . . . . . A T C . . . . . . . . . . . . . . C A . .
blockSeqs : . . . T . . . . . . . . . A T C . . . . . . . . . . . . . . G A . .
blockSeqs : . . . . A T C . . . . . . . . . . . . . . G T . .
blockSeqs : . . . . . . . . . . . . . . . . . . . G T . .
blockSeqs : . . . . . . . . . . . . . . . . . . . G T . .
blockSeqs : . . . . . . . . . . . T T . .
blockSeqs : . . . . . . . . . . . G A . .
blockSeqs : . . . . A A . .
blockSeqs : . . A T . .
blockSeqs : . T T . .
blockSeqs : T . .
blockSeqs : T . .
blockSeqs : T . .
blockSeqs : T . .
blockSeqs : T . .
blockSeqs : T . .
blockSeqs : T . .
blockSeqs : T . .
blockSeqs : T
blockSeqCons :
originalCons : TATTGTTTTTGTTTTTTCGTATAAATTTCAGGTCCTTCGCCGGCATCTTGCTAGAGCAATAACTAGGAAGCACCCAACTGGTTATGAGGGTGGACTTATAATACATCAGGACAACGCACCAGCTCACNCGTCGAGAGAAGTGCA-GACG---ACAATTGAAA--TACAA----ATGGAGGCAGAAGTTCTT----CCA-CATCCGCCGTACTCCCCAGACCTAGCNCCGTGCG---ATTTC--GCACTCTT---TCC-TAAATTAAAGTGCGAA-TTGAAGGGCAAACATTTTAA--------TGACTTAAAA-GAACTTCAAACGGAATCTAAT-TCCATTTT-GTATTCATACC--CATCGGA-CTGGT--ACAAGCAAGTTTTTCA-TCAGTGG-GTAGAACGNCGC-CGCAAATGTATAGAAAATAGCGGTGCT-TACTTGTGA--AATAAATTGACGTCGCGACG--A-CGTAACGT-AAAATCTGGCCTGCGGCAGATAGGC-GTACATGA-CGTGTTTGAAATACATGTNA--C-TGTTTTATTTGAATATATAT---T-TTCT--TCATACTTTGCATACAGTTT-GCAGTTA-GAT-TAAA----TATAATAC-A-TGTAAA-ACTCCAAATAA-ATC---AGACATGT-CA-TNTTCATTTTATGAGATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
finalCons : TATTGTTTTTGTTTTTTCGTATAAATTTCAGGTCCTTCGCCGGCATCTTGCTAGAGCAATAACTAGGAAGCACCCAACTGGTTATGAGGGTGGACTTATAATACATCAGGACAACGCACCAGCTCACNCGTCGAGAGAAGTGCA-GACG---ACAATTGAAA--TACAA----ATGGAGGCAGAAGTTCTT----CCA-CATCCGCCGTACTCCCCAGACCTAGCNCCGTGCG---ATTTC--GCACTCTT---TCC-TAAATTAAAGTGCGAA-TTGAAGGGCAAACATTTTAA--------TGACTTAAAA-GAACTTCAAACGGAATCTAAT-TCCATTTT-GTATTCATACC--CATCGGA-CTGGT--ACAAGCAAGTTTTTCA-TCAGTGG-GTAGAACGNCGC-CGCAAATGTATAGAAAATAGCGGTGCT-TACTTGTGA--AATAAATTGACGTCGCGACG--A-CGTAACGT-AAAATCTGGCCTGCGGCAGATAGGC-GTACATGA-CGTGTTTGAAATACATGTNA--C-TGTTTTATTTGAATATATAT---T-TTCT--TCATACTTTGCATACAGTTT-GCAGTTA-GAT-TAAA----TATAATAC-A-TGTAAA-ACTCCAAATAA-ATC---AGACATGT-CA-TNTTCATTTTATGAGATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
Alignments
lowQualScore : 1 11 2222 222 111 1 33333333 1 1 11 1 11 1 1
lowQualScore : 0 1 4 1 1 7 0 888 33 0 1111 2 6666 6 5 3 0 1 1 111 000 1 555 99 5 0 0 66666666 0 5 0 3 5 3 33 0 33 5 0 0 8 1 1 5555 0 0 2 3 2 5 2 9 22 1 1 22 2 2 0 8 9 2 1 1 4 1 3 3333 0 0 333 1 22 1 1 1 3333 1 5 6 1 222 1 1 1 1 0 0 11 1
lowQualScore : . . . . . . . ... .. . .... . .... . . . . . . ... ... . ... .. . . . ........ . . . . . . .. . .. . . . . . . .... . . . . . . . . .. . . .. . . . . . . . . . . . .... . . ... . .. . . . .... . . . . ... . . . . . . .. .
lowQualScore : 6 9 3 9 0 9 0 888 88 8 2222 5 5555 2 1 8 2 0 1 555 555 0 888 99 1 2 0 22222222 0 1 0 2 0 2 88 0 88 1 2 0 9 1 0 8888 1 7 4 9 5 0 1 7 99 9 5 99 1 1 9 4 2 5 8 8 0 0 4 0000 8 1 222 8 55 7 7 7 5555 7 0 7 6 888 5 5 0 8 5 8 66 1
consensus : TATTGTTTTTGTTTTTTCGTATAAATTTCAGGTCCTTCGCCGGCATCTTGCTAGAGCAATAACTAGGAAGCACCCAACTGGTTATGAGGGTGGACTTATAATACATCAGGACAACGCACCAGCTCACNCGTCGAGAGAAGTGCA-GACG---ACAATTGAAA--TACAA----ATGGAGGCAGAAGTTCTT----CCA-CATCCGCCGTACTCCCCAGACCTAGCNCCGTGCG---ATTTC--GCACTCTT---TCC-TAAATTAAAGTGCGAA-TTGAAGGGCAAACATTTTAA--------TGACTTAAAA-GAACTTCAAACGGAATCTAAT-TCCATTTT-GTATTCATACC--CATCGGA-CTGGT--ACAAGCAAGTTTTTCA-TCAGTGG-GTAGAACGNCGC-CGCAAATGTATAGAAAATAGCGGTGCT-TACTTGTGA--AATAAATTGACGTCGCGACG--A-CGTAACGT-AAAATCTGGCCTGCGGCAGATAGGC-GTACATGA-CGTGTTTGAAATACATGTNA--C-TGTTTTATTTGAATATATAT---T-TTCT--TCATACTTTGCATACAGTTT-GCAGTTA-GAT-TAAA----TATAATAC-A-TGTAAA-ACTCCAAATAA-ATC---AGACATGT-CA-TNTTCATTTTATGAGATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
Reference ( family-501 ) : TATTGTTTTTGTTTTTTCGTATAAATTTCAGGTCCTTCGCCGGCATCTTGCTAGAGCAATAACTAGGAAGCACCCAACTGGTTATGAGGGTGGACTTATAATACATCAGGACAACGCACCAGCTCACNCGTCGAGAGAAGTGCA-GACG---ACAATTGAAA--TACAA----ATGGAGGCAGAAGTTCTT----CCA-CATCCGCCGTACTCCCCAGACCTAGCNCCGTGCG---ATTTC--GCACTCTT---TCC-TAAATTAAAGTGCGAA-TTGAAGGGCAAACATTTTAA--------TGACTTAAAA-GAACTTCAAACGGAATCTAAT-TCCATTTT-GTATTCATACC--CATCGGA-CTGGT--ACAAGCAAGTTTTTCA-TCAGTGG-GTAGAACGNCGC-CGCAAATGTATAGAAAATAGCGGTGCT-TACTTGTGA--AATAAATTGACGTCGCGACG--A-CGTAACGT-AAAATCTGGCCTGCGGCAGATAGGC-GTACATGA-CGTGTTTGAAATACATGTNA--C-TGTTTTATTTGAATATATAT---T-TTCT--TCATACTTTGCATACAGTTT-GCAGTTA-GAT-TAAA----TATAATAC-A-TGTAAA-ACTCCAAATAA-ATC---AGACATGT-CA-TNTTCATTTTATGAGATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5192 : TATTGTTTTTGTTTTTTCGTATAAATTTCAGGTCCTTCGCCGGCATCTTGCTAGAGCAATAACTAGGAAGCACCCAACTGGTTATGAGGGTGGACTTATAATACATCAGGACAACGCACCAGCTCACTCGTCGAGAGAAGTGCA-GACG---ACAATTGAAA--TACAA----ATGGAGGCAGAAGTTCTT----CCA-CATCCGCCGTACTCCCCAGATCTCGCACCGTGTG---ATTTC--GCACTCTT---TCC-GAAATTAAAGTGCGAA-TTGAAGGGCAAACATTTTAA--------TAACTTAAAA-GAACTTCAAACGGAATCTAAT-TCCATTTT-GTATTCATACC--CATCGGA-CTGGT--ACAAGCAAGTTTTTCA-TCAGTGG-ATAGAACGCCAC-CGCAAATGTATAGAAAATAGCGGTGCT-TACTT-TGA--GAAGAATTGACGTCGCGACG--T-CGC--CTTCAAAAT-TGACCTGCGGCACATCACT-GTACATGG-TGTATATCGAATGTATGTAA--A-TTATTTGTTATATTGTGTAT---T-TTAT--TTAAAATTTGTATACAACTT-ACACTGA-GAT-TGAA----TACTATAA-ACTGAAAATATTACACATAT-ATA---AG--ATGT-AG-TTTTTATTTTATAGCATGTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5193 : TATTGTTTTTGTTTTTTCGTATAAATTTCAGGTCCTTCGCCGGCATCTTGCTAGAGCACTAACTAGGAAGCACCCAACTGGTTATGAGGGTGGACTTATAATACATCAGGACAACGCACCAGCTCACTCGTCGAGAGAAGTGCA-GACG---ACAATTGAAA--TACAA----ATGGAGGCAGAAGTTCCT----CCA-CATCCGCCGTACTCCCCAGATCTCACACCGTGTG---ATTTC--GCACTCTT---TCC-AAAATTAAAGTGCGAA-TTGAAGGGCAAACATTTTAA--------TAACTTAAAA-GAACTTCAAACGGAATCTAAT-TCCATTTT-GTATTCATACC--CATCGGA-CTGGT--ACAAGCAAGTTTTTCA-TCAGTGG-GTAGAACGCCAC-CACAAATGTATAGAAAATAGCGGTGCT-TACTT-TGA--GAAGAATTGACGTCGCGACG--T-CGC--CTTCAAAAT-TGACCTGCGGCACATCACT-GTACATGA-TGTATATCGAATGTATGTAA--A-TTATTTGTTATATTGTGTAT---T-TTAT--TTAAAATTTGTATACAACTT-ACACTGA-GAT-TGAA----TACTATAA-ACTGAAAATATTACACATAT-ATA---AG--ATGT-AG-TTTTTATTTTATAGCATGTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5194 : TATTGTTTTTGTTTTTTCGTATGAATTTCAGGTCCTTCGCCGGCATCTTGCTAGAGCAATAACTAGGAAGCACCCAACTGGTTATGAGGGTGGACTTATAATACATCAGGACAACGCACCAGCTCACTCGTCGAGAGAAGTGCA-GACG---ACAATTGAAA--TACAA----ATGGAGGCAGAAGTTCTT----CCA-CATCCGCCGTACTCCCCAGATCTCGCACCGTGTG---ATTTC--GCACTCTT---TCC-GAAATTAAAGTGCGAA-TTGAAGGGCAAACATTTTAA--------TAACTTAAAA-GAACTTCAAACGGAATCTAAT-TCCATTTT-GTATTCATACC--CATCGGA-CTGGT--ACAAGCAAGTTTTTCA-TCAGTGG-GTAGAACGCCAC-CGCAAATGTATAGAAAATAGCGGTGCT-TACTT-TGA--GAAGAATTGACGTCGCGACG--T-CGC--CTTCAAAAT-TGACCTGCGGCACATTACT-GTACATGA-TGTATATCGAATGTATGTAA--A-TTATTTGTTATATTGTGTAT---T-TTAT--TTAAAATTTGTATACAACTT-ACACTGA-GAT-TAAAATACTATAA-AC---TGAAAATATTACACATAT-ATA---AG--ATGT-AG-TTTTTATTTTATAGCATGTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5195 : TTCTTATTGTTTTTTCGTATAAATTTCAGGTCCTTCGCCGGCATCTTGCTAGAGCAATAACTAGGAAACACCCAACTGGTTATGAGGGTGGACTTATAATACATCAGGACAACGCACCAGCTCACTCGTCGAGAGAAGTGCA-GACG---ACAATTGAAA--TACAA----ATGGAGGCAGAAGTTCTT----CCA-CATCCACCGTACTCCCCAGATCTCGCACCTTGTG---ATTTC--GCACTCTT---TCC-GAAATTAAAGTGCGAA-TTGAAAGGCAAACATTTTAA--------TAACTTAAAA-GAACTTCAAACGGAATCTAAT-TCCATTTT-GTATTCATACC--CATCAGA-CTGGT--ACAAGCAAGTTTTTCA-TCAGTGG-GTAGAACGCCAC-CACAAATGTATAGAAAATAGCGGTGCT-TACTT-TGA--GAAGAATTGACGTCGCGACG--T-CGC--CTTCAAAAT-TGACCTGCGGCACATCACT-GTACATGA-TGTATATCGAATGTATGTAA--A-TTATTTGTTATATTGTGTAT---T-TTAT--TTAAAATTTGTATACAACTT-ACACTGA-GAT-TGAA----TACTATAA-ACTGAAAATATTACACATAT-ATA---AG--ATGT-AG-TTTTTATTTTATAGCATGTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5196 : AAATTTCAGGTCATTCACTGTTCTCTAGGAAGAGCACTAGCCAGGAAGTGGCCGAATGGTTATGAGGGCGGACTTATCATTCATCGGGATAATGCACCTGCGCACACCTCCAAGGAAGTGCT-GACG---ACAACTGAAA--TCAAA----ATGGAGGCTGAGGTTCTT----TCC-CACCCCCATTACTCTCCAGACCTAGCTCCATGCA---ATTTC--GCACTTTT---TCC------TAAAGTGTGAA-TTGAAGGGAAAACAATTTAA--------CGACTTACAT-GAACTTAGAACAAAAGCTAAC-TCAATTTT-ATATTCATAGC--CATCCGA-CTGGT--TCAGTCAGGTTTATCA-ACAGTGG-ATAGAGTGAC
gi|5197 : TATTACACAT--GGACAATGCACCATCACATACGGC-AGAAACATCCAAGGCG---GTTCTTGAGAAGTGCAACATTAT-----CA-----TCCT----ACAGCATCTTCCTTACAGCCCTGATTTAGCGCTGTGCG---ATTTT--GCCCTCTT---TCCGTGCATTAAAA-AAGAACTTAGAGGGCGCCTATTTGAAGACATATCTGAATTAAAATGTGCTTT--GCAGAATATTGTGTCCA-----G----CATACCATCTTCGGATTTCGTTGACATGTA-------CACTAAATGGTGTA-AACGGTGG-CAAAAATGTATAGACAACGGAGGAGAG-TATTT-TGA--GAAAGAGTGAC-TCGa
gi|5198 : TATTACACAT--GGACAATGCACCATCACATACGGC-AGAAACATCCAAGGCG---GTTCTTGAGAAGTGCAACATTAT-----CA-----TCCT----ACAGCATCTTCCTTACAGCCCTGATTTAGCGCTGTGCG---ATTTT--GCCCTCTT---TCCGTGCATTAAAA-AAGAACTTAGAGGGCGCCTATTTGAAGACATATCTGAATTAAAATGTGCTTT--GCAGAATATTGTGTCCA-----G----CATACCATCTTCGGATTTCGTTGACATGTA-------CACTAAATGGTGTA-AACGGTGG-CAAAAATGTATAGACAACGGAGGAGAG-TATTT-TGA--GAAAGAGTGAC-TCG
gi|5199 : -GACGTGTACGACTGAGA--TCCAA----ATGAAGGCTGA-GTTCTTTTTCCC----TCCCCCTTAATATCCAGACTTCGCTCCGTACG---ATTTCCAACACTTTTATTTCC-TAAATAAAAGCGTGAG-CTGAAAAGAAAACAATTTGA--------AGACTTACAT-GAACTTCAAACG-AACGCAAA-TCCATTTTTGTACTCTAACC--CATCGGA-CTGGT--TCAATCGAATTTTTCA-ACAATGC-AAAGAATGACAC--------GGATAG---------------TATTT-TGAAGAAAAAAT--ACTTCGCAACGTTA-T-TGAC---AAAA--CGAACTGCGACAAA-ATGCTATACCCTA-TGTGGTTCAAAGGTAAGTCAAGCATG---CATTAGACTGTATGT---T-CTCC--TTGAATTCTG-ATACGGTTT-ACAGAGT-GATGTGGC----TATAA-ACTT-TGTCAC-ATTC--AATCATATC---TAACA-GT-TGCTTTTCATTTTATTAG-TTTGTTTCGG-CGATCTTCTGGATAACTCCTCATA
gi|5200 : AGGAGTTGTT----CCA-CATGCACCATATTCCCCAGACCTAGCACTGTGTG---ACT
gi|5201 : GGAGTTCTT----CCA-CATGCACCATATTCCCCAGACCTAACCCCGTGTGACTATTTC-----TTGTT---CCC-TAAACTGAA
gi|5202 : AGTTCTT----CCA-CATGCACCATATTCCCCAGACCTAGCCCCGTGTGACTATTTC-----TTGTT---CCC-TAAACTGAA
gi|5203 : AGTTCTT----CCA-CATGCACCATATTCCCCAGACCTAGCCCCGTGTGACTATTTC-----TTGTT---CCC-TAAACTGAA
gi|5204 : AGTTCTT----CCA-CATGCACCATATTCCCTAGACCTAGCCCCGTGTGACTATTTC--TTATTC------CC-TAAACTGAA
gi|5205 : TGA-GTGGAGCGACGAGTGTGAATG---AGAAAAT----------TACTTGTAA--ACTAAATTGACGTCGCAACG--A-CGTAACGT-AAA-TCTGGCCTGCGACCGATATGC-GTACGTTG-CATGTTTGAAATACATGTGA--C-TGCTTTATTTGAATATAAAT---T-TTCT--TCATACTTTACATACAGTTT-GCAGTTA-GAT-TAAA----TATAATAC-A-TGTAAA-ACTCCAAATAG-ATG---A-ACATGT-CA-TGTTTATATTATGAGATTTG--TTCA-CGAACTTCTGGATAACCCCTCGTA
gi|5206 : AGAGTAGGGATA-T-TACTTGTGA--AATAAATTAACGTCATGACG--A-CGTAACGT-AAA-TCTGACCTGCGGCATATAGGC-GTACATGA-GGTGTTTGAAAAACATGTAA--C-TATTTTATTTGAATATATAT---T-TTCT--TCATATTTTGCATACGGTTT-GAAGTTT-TAT-TAAA----TATAATAC-A-TGTAAA-ACTCCAAATAA-ATC---GGACATGT-CA-TCTTCATATTATGAGATTTG--TACA-CAAACTTCTGGACAACCCCTCGTA
gi|5207 : GGCGCTGTACTTTTGA--AATAAATTGACATGGGGACA--A-CGCATCGT-AAA-TCTGACCTGCGGCAGATAGGC-GTACATGA-CGTGTTTGAAATACATGTAG--C-TATTTTATTTTAATATACAT---T-TCCT--TCATATTTTGCGTACGGTTT-GAAGTTA-TAT-TAAA----TATAATAC-A-TGTAAA-ACTCCAAATAA-ATC---CGACATGT-CA-TCTTCGTATTATGAGATTTG--TCCA-CGAACTTCTAGATAACCCCTCATA
gi|5208 : T-TACTTGTAA--AATAAATTGACGTTGCAATG--A-CGTAACCT-AAA-TCTGGCCTGCGGCAGATAGGC-GTACATGA-CATGTTTGAAATACATGTTT--C-TGTTTTATTTAAATATATAT---T-TTCT--TCATACTTTGCATACAGTTT-GCAGTTA-TAT-TAAA----TATAATAC-A-TGTAAA-ACTCCAAATCA-ATC---AGATATGT-CA-TGTTCATATTATGAGATTTA--TCCA-CGAACTTCTGGATAACCCATCGTA
gi|5209 : T-TACTTGTGA--AATAAATTAATGTTGCAACG--A-CGTAGCAT-AAA-TCTGACCTGCAGCAGATATGC-CTATATGA-CATGTTTGAAATACATGTAA--C-TATTTTATTTGAATATATAT---T-TTCT--TTATACTTTGTGTACAATTT-GAAGTTA-TAT-TAAA----TATAATAC-A-TGTAAA-ACT-CAAATAA-ATC---CGACATGT-CA-CTTTTATATTATGAGATTTG--TCCA-CAAACTTCTTGATAACCCCTCGTA
gi|5210 : T-TACTTGTAA--AATAAATTGACATCGCAACG--A-CGTAACGT-AAA-TCTGGCCTGCGGCAGATAGGC-GTACATGA-CATATTT-AAATACATGTTA--C-TGTTTTATTTGAATATATAT---T-TTCT--TGATACTTTGCATACAGTGT-GCCGTTA-GAT-TAAA----TATAATAC-A-TGTAAA-ACTCCAAATAA-ATC---AGACATGT-CA-TGTTCATGTTATGAGGTTTG--TCCA-CGAACTTCTGGATAACCCCTTGTA
gi|5211 : T-TACTTGTGA--AATAAATTGACGTCGC-ACA--AACGTAACGT-AAAA-CTGGCCTGCTGTAGATAGGC-GTACGTGA-CATGTTTGAAATACATGTTA--T-TGTTTTATTTAAAAATATAT---T-TTCT--TCATACTTTGCATACAGTTT-GCAGATA-TAT-TAAA----TATAGTAC-A-TGTAAA-ACTCCAAATAA-ATC---CAACATGT-CA-TGTTCATATTATGAGATTTG--TCCA-CGAACTTTTGGATAACCCCTCGTA
gi|5212 : T-TACTTGTAA--AATAAATTGACA----------A-CGTAATGT-AAA-TCTGGCCTGCGGCAAATAGGC-GTACATGA-CATGTTTGAAATACATGT-A--C-TGTTTTATTTAAATATATAT---T-TTCT--TCATATTTTGCATACAGTTT-GAAGTTA-GAT-GAAA----TATAATAA-A-TGTAAA-ACTCCAAATAA-ATC---AGACATGT-CA-TGTTCATATTATGAGATTTG--TCCA-AGAACTTCTGGATAACCCCTCGTA
gi|5213 : T-TACTTGCAA--AAATAATTGACGTCGAGACG--A-CGAAATGT-------TGATCTGTGGCGGC--GGC-G-GC-TGATCATATGTAGAATACATGCAA--C-TGTTTCATTTGAATATATATATATATTAT--TCATAGTTTGCATACAATTT-GCAATTA-GAT-TAAA----TAATATAC-A-TATAAA-ACTTTAAATAA-ATC---CGACTTGC-CA-TTTTCACTTTATGAGCTTTG--CTCA-CAAACTTCT
gi|5214 : T-TACTTGTAA--AATAAATTGACATCGCAACG--A-CGTAACGT-AAA-TCTAGC----GGCAGATAGGC-GTGCATGA-CATGTTTGAAATACATGTTA--C-TGTTTTATTTGAATATATAT---T-TTCT--TCATACTTTGCATACAGTTT-GCTGTTA-GAT-TAAA----TATAATAC-A-TGTAAA-ACTCCAAATAA-ATC---AGACATGT-CA-TGTTCATATTATGAGATTTA--T------AACTTCTGGATAACTCCTCGTA
gi|5215 : T-TATTTGTAA--AATAATTTGCCGTCGCAACA--A-CGTAACGT-AAA-TCTGATCTGCGGCATATAGGC-GTACCTGA-C-------------ATGTTA--------------GAATATATAT---T-TTTTCATCATACTTTGCATACAGTTT-GCGGTAA-GAT-TAGA----TATAACAC-A-TATAAA-TCTTTGAATAA-ATC---AGACATGT-CA-TGTTCATAATATGATATTTG--TCAA-CAAACTTCTGGATAACCCCTCGTA
gi|5216 : T-TACTTGTAA--AATAAATTGACGTCGAAATG--G-CGTAACGT-AAA-TCTGGCCTGTGGCAGGTAGGC-ATACATGA-CATGTTTGAAATACATGTTA--C-TGTTTTATTTGAATATATAT---T-TTCT--TCAGACTTTGCATACAGTTT-GCAGTTA-GAT-TAAA----TATAAAAC-A-TGTAAA-ACTCCAAATAA-ATC---CGACATGT-CA-TGTTCATATTGT
gi|5217 : AATTGACGTCGCGACA--A-CATAACAT-AAA-TCTGACCTACGGCAGATAGGT-GTACATGA-CATGTTTGAAATACATGTAG--C-TATTTTATTTTAATATATAT---T-TTCT--TCATATTTTGCATAAGGTTT-G-AATTA-TAT-CTAA----TATAATAC-A-TGTAAA-ACTCCAAATAA-ATC---CGACATGT-CA-TCTTCATATTATGAGATTTG--TCCA-CAAACATCTAGATAACCCCTAGTAag
gi|5218 : AATTGATGTCGCAACG--A-TGTAACGT-AATATCTTGCCAGCGGCAGATAGGC-GTACATGA-C-----------------------------ATTTGAATATATAT---T-TTCT--TCATACTTTGCATACAGTTT-GCAGATAAGAT---AA----TATTATAC-A-TGTAGA-AATCAAAATAA-ATC---AGACATGT-CA-TGTTCATATTATGAGATTTG--TCC--CGAACTTCTGGATAACCCCTCGTA
gi|5219 : TTTTATTACATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5220 : aaaattgagctgcggcacttcatgtgcatgtacgttactatggttactataacttcataatggttgcatgaaaaacaataaattacttactatagatttgtaatacataaatgtttaagttatgtaatttattcttatgaacgtgtgcacaataattTTTTATAACATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5221 : aaaattgagctgcggcacttcatgtgcatgtacattactatggttactataactttataatggttgcatgaaaaacaataaattacttactatagatttgtaatacataaatgttcaagttatgtaatttatacttatgaatgtgtgcacaataattTTTTATAACATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5222 : aaaattgaactgcggcacttcatgtgcatgtacgttactatggttactataactttataatggttgcatgaaaaacaataaattacttactatagatttgtaatacataaatgtttaagttatgtaatttacacttatgaacgtgtgcacaataattCTGCGGCAGATAGGC-ATAGAAGA-CATGTTTGAAATACATGTTA--C-TGTTTTATTTGAATATATTT---T-TTCC--TCATACTTTGCATACAGTTT-GCAGTTA-GAT-TAAA----TATAATAC-A-TGTAAA-TCTCCAAATAA-ATC---AGACATTT-CA-TGTTCATTATATGATATTTG--TCCA-CGATCTTCTGGATAACCCCTCGTA
gi|5223 : aaaattacgacgttaAAATCTGGCCTGCGGCAGATAGGT-GTACATGA-CATGTTTGAAATACATGTTA--C-TGTTTTATTTGAATATATAT---T-TTCT--TCATACTTTGCATACAGTTTGGCAGTTA-TAT-TAAA----TATAATAC-A-TGTAAA-ACTCAAAATAA-ATC---AGACATGT-CA-TGTCCATATTATGAGATTTG--TCCA-CAAACTTCTGGATAACCCCTCGTA
gi|5224 : CTGCGGCAGGCGGGC-GTACATGA-CATGTTCGAAATACATGTTA--C-TGTTTTTTTTTAATACATAT---T-GTCT--TCATACTTTGCATACAGTTT-GCAGTTA-GAT-TTAA----TATAATAC-A-TGTAAA-TATCCAAATTA-ATT---AGACATGT-TA-TGTTCATAATATGAGATTTG--TCCA-CGAACTTCTGGATAACCCTTCGTA
gi|5225 : TTTACATACAGTTC-ACTGTT--GAT----A----TATAACAC-A-TGGAAA-ACTTAAAATAA-ATCTGTAAAATTGT-AA-TTTTTATTTTATAAGATTTG--TCCA-CAAGCTTCAGGATAACCCATCGTA
gi|5226 : TT-ACAGTTT-GAT-TAAA----TATATAAC-A-TGAAAA-TCTCCAAATAA-ATC---AGACATGT-CA-TGCTCATTATATGATATTTG--TCCA-CAAACTTCTGGATAACCCCTCGTA
gi|5227 : ATTTTATTTAATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5228 : aatacttaagttgtgaaaaatatagctatgtacttgcgtaaatatag-CA-TATAGATTTTATTAAATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5229 : aatacttaagttgtgaaaaatatagcgatgcatttgATTATATTAAATTTG--TCCA-CGAACTTCTGGATAACCCCTCGTA
gi|5230 : aatacttaagttgtgaaaaatatagttatgtacttgcataaatatagATTTTATCAAATTCG--TCCA-TGAACTTCTGGATAACCCCTCGTA
gi|5231 : aatacttaagtttataaaaatatagcaatgtacttgcataagtatggAAATAT-AGC---A---ATGTACA-TATGGATTTTATAAAGATTG--TCCA-AGAACTTCTGGATAACCCCTCGTA
gi|5232 : aatacttgagttgtgaaATTTTATTAAATTTG--TCCAACGAACTTCTGGATAACCCCTCGTA
gi|5233 : atacttaagttgtgaaaaatatagctatgcacttgcataaataaagATTTTATTAAATGTG--TCCA-TGAACCTCTGGATAACCCCTCGTA
gi|5234 : taagctgtgcaaaatatagcaatgtacttgcatgaatatgg-TTTTTATTTTATTTGGTTTG--TCCA-CAAACTTCTAGATAACTCCTCGTA
gi|5235 : tagTTGATTTTATAAAATGTG--TCTA-TGAAGTCCTGGATAACCCCTCGTA