lowQualScore : 333333333333 111 1 33333333333333333 111111111111111
lowQualScore : 6 444444444444 555 7 0 22 333 1 2 222 333 11 1 1 333 2 3 1 111 22222222222222222 9999999999 333333333333333 22222 11 222222 1 111111111 4444444 99 2222 3 0 3 0 2
lowQualScore : . ............ ... . . .. ... . . ... ... .. . . ... . . . ... ................. .......... ............... ..... .. ...... . ......... ....... .. .... . . . . .
lowQualScore : 0 222222222222 222 3 2 00 111 4 9 444 000 66 1 1 111 3 3 1 999 22222222222222222 2222222222 666666666666666 77777 00 111111 4 777777777 2222222 66 8888 5 4 0 9 4
consensus : TCTTTTCTGCCGATAATATTTTACAAGAGAAATTTTCTCTTCTAGAAA---A--GT---G---TTCAAATGCACGCGTTTGAAAGAATG--GAT-ATT-TCAAAAC---TGTCAAG--TAGAA--AA-GA-A---A-CTT-C-TC---TT--------C--------AG----------TAT---TG----------TC----TG--T------AAAA-GCG---------AG-------ACNNTC----CCAGAA-GAGAAANT-TTCTCTTCTGGGATNGTCTCGTT
Reference ( gi|94900 ) : TCTTTTCTGCCGATAATATTTTACGAGAGAAATTTTCTCTTCTAGAAA---A-AGT---G---TTCAAATGCGCGCGTTTGAAAGAATG--GAT-AAT-TCAAATC---TGTCAAG--CAGAA--AA-GA-A---A-CTT-C-TC---TT--------C--------AG----------TAT---TG----------TC----TG--T------AAAA-GCG---------AG-------ACCCTC----CTAGAA-GAGAAAAT-TTCTCTTCTGGGATTGTCTCGTT
gi|94902 : TCTTTTCTGCCGATAATATTTTAAAAGAGAAATTTTCTTTTCTAGAAT---A-AGG---G---TTCAAATGCATGCATTTGAAAGAATG--GAT-AAT-TCAAATC---TGTCAAG--CAGAA--AA-GA-A---A-GTT-C-TC---TT--------C--------AG----------TAT---TG----------TC----TG--T------AAAA-GTG---------AG-------GCACTA----TCACAA-GAGAAAAT-TTCTCTTCCGGGATTGTCTCGTT
gi|94905 : TTTTTTTTGTCGATAATATTTTAAAAGTGAAGTTTTCTTTTCTAGAAA---A-AGT---G---TTCAAATGAACGCGTTTGAAAGAATG--GAT-ATT-TTAAGTC---TGTCAAA--CAGAG--AA-GA-A---A-TTT-C-TC---TT--------T--------AG----------TAT---TG----------TC----TG--T------AAAA-ACG---------AT-------ATCCTC----CCAGAA-GAGAAAAT-TTCTCTTCCAGGATTGTCTCGTT
gi|94894 : TCTTTTCTGCGGATA---TTTTACAAGAGAAATTTTCTCTTCTAGAAA---A-AGT---G---TTCAAATACACGCGTTTGAAAGAGTA--GGT-ATT-TCAAAAC---TGTCAAG--TGGAA--AA-GA-T---A-CTT-C-TC---TTCTGA----C--------AG----------TAT---TG----------TC----TG--T------AAAA-GCG---------AA-------ACCATT----CCAGAA-GAGAAAAT-TTCTCTTCTGTGATTATCTCGTT
gi|94896 : TCTTTTCTGCGGATA---TTTTACAAGAGAAATTTTCTCTTCTAGAAA---AAAGT---G---TTCAAATGCACGCGTTTGAAAGAATA--GTT-ATT-TCAAAAC---TGTCAAG--TAGAA--AA-GA-A---A-CTT-C-TC---TT--------CTGAG----AG----------TAT---TG----------TC----TG--C------ATAA-GCG---------AA-------ACCATT----CCAGAA-GAGAAAAT-TTCTCTTCTGTGATCATCTCGTT
gi|94904 : TCTTTTCTGCAGATATTATTTTACAAGAGAAATTTTCTCTTCTAGAAA---A-GGT---A---TGCAAATGCACGTGTTTGAAAGAATA--GAT-ATT-TCAAAAC---TGCCAAG--TGAAA--AA-GA-A---A-CTT-C-TC---TTCTGA----C--------AG----------TAT---TG----------TC----TG--T------AAAA-GCG---------AA-------ACCATT----CCGGAA-AAGAAAAT-TTCTCTTCTGAGATTGGCTCGTT
gi|94906 : TCTTTTC-----A-AATAATTTTCAAGAGAAGTTTTCTCTTCAAGAAA---A-TGT---G---TTTAAATGCACGCGATTGAAAGAATG--GTT-AAT-TCAAATA---TGTCAAG--CAGAA--AA-GA-A---A-CTT-C-TC---TT--------C--------AG----------TAT---TG----------TC----TG--T------AAAA-GCG---------AG-------GCCCTT----CCAGAA-GAGAACAT-TTTTCTTCTGGTATTGTCTCGTT
gi|94901 : ttTCTGTTCTGCAGATAATATTTTACAAGAGATATTTTCGCTTCCAGAAA---A-GGT---G---TTCATGTGCACGCGTTTGAAAGAATG--GCT-ATT-TCAAAAC---TGTCAAA--TGGAA--AA-GA-A---A-CTT-C-TC---TTCTGA----C--------AG----------TAT---TG----------TC----TG--T------AAAA-GCG---------AA-------ACCCTT----CCAGAA-TAGAAAAA-ATCTCTTCTGTGATTGTCTCGTT
gi|94893 : tttTCTTTTCTGCCGATTATATTTTACAAGAGAAATTTTCTCTTCTAGAAATTTA-------G---TTCAAATATACGCGTTTGAAAGAATG--AAT-CTT-TCAAAAC---TGTCAAG--TGGAA--AA-GA-A---A-CGT-C-TC---TT--------C--------AG----------TAT---AA----------AA----TG--T------AAAA-GCA---------AG-------GCTCTC----CCAGAA-GAGAAAAT-TTCTCTTCTGGGATAGTCTCGTTgtta
gi|94898 : TCTTTTTCGCAGATATTATTTTACAAGAGAAATGTTCTCTTCTAGAAA---A-AGT---G---TTCAAATGCACGCATTTGAAAGAATA--GGT-ATT-TCAG--C---TGTCAAG--TGGAA--AA-GA-AACTA-CTT-T-TC---TTCTGA----C--------AG----------TAT---TG----------TC----TG--T------AAAA-GCG---------AA-------ACCCTT----CCAGAA-GAGAAAAT-
gi|94895 : TCTTTTCTGCCGATTATATTTTACAAGAGAAATTTTCTCTTCTAGAAATTTA-------G---TTCAAATTCACGCGTTTGAACGAATG--AAT-CTT-TCAAAAT---TGTCAAG--TAGAG--AA-GA-A---A-CGT-C-TT---TT--------C--------AG----------TAT---AA----------AA----TG--T------AAAA-GCA---------AG-------GCTCTC----CCAGAA-GAGAAAA-------TTCTGGGATAGTCTCGTT
gi|94897 : TTTTTTCTGTCGATAATATTTTACAAGGGAAATTTTCTCTTCTAGAAA-------TTTGG---TTCAAGTTCACGCGTTTGAAAGAATG--ACT-CTT-TCAAAAC---TGTCAAG--TAGAA--AA-GA-A---A-CGT-C-TC---TT--------C--------AG----------TAT---AA----------TA----TG--T------AAAA-GCA---------A
gi|94909 : TCTTTTCTGCCGATTATATTTTACAAGAGAAATTTTCTCTTCTAGAAATTTA-------G---TTCAAA
gi|94907 : TTTTTTATCGATAATATTTTAAAAGAGAAATTTTCTCTTCTAGAAA---A-AGT---G---TTCAAATGCAGACGTTTGAATGAATG--GAT-ATT-TCAAATC---TGTTAAGCACAGAA--AA-GA-A---A-CTT-C-TC---TT--------C--------AG----------TAT---TG----------TC----TG--T------AAAA-GCG---------AG-------ATCCTT----CCAGAA-GAGAAAAT-TTCTCTTCTAGGAGTGTCTCGTTaatatctcttacgttgctagcgagaaatttctccatgtcttatcttaacgaagcatttctcttgttctgcatatttctccgattacaacgagataatcacagaagagaaattttctcttctggaatggtttcgctttta
gi|94908 : tTTTTCTACTGATAATATTGTACAAGAGAAATTTTCTCTTCTAGAAA-------T---GCGATTCAAATTCACCCATTGGAAAAAATG--AAT-CTT-TCAAAAC---TGTCAAG--TAGAA--AA-GA-A---A-CGT-C-TA---TT--------C--------AG----------TAT---GA----------TA----TG--T------AAAA-GCA---------GG-------GCTTTC----CCAGAT-AAGAAACT-TTCTCTTCTGGGATAGTCTCGTT
gi|94903 : TTTTTGTCGATAATATTTTAGAACAGAAAATTTCTTTTCTAGAAA---A-AGT---G---TTCAAATGCAGACGTTTGAAAGAATG--GAT-ATT-TCAAATC---TGTCAAG--CAGAA--AA-GA-A---A-CTT-C-TC---TT--------C--------AG----------TGT---TG----------TC----TG--T------AAAA-TCG---------AG-------ATCCTT----CCAGAA-GAGAAAAT-ATCTCTTCTGGGAGTGTCCC
gi|94893 : ttgCGAGACTATCCCAGAAGAGAAATTTTCTCTTCTGGGAG---A-
gi|94899 : tcttttctgccgattatattttacaagagaaattttctcttctagaaatttagttcaaatatacgcgtttgaaagaatgaatctttcaaaactgtcaagtggaaaagaaacgtctcttcagtataaaatgtaaaagcaaggcCGATACAATCTTAGAAGAGAAATTTTCTCTTCTGGGAtt
gi|94923 : ttttttatgaaatattttacaagagaaattttctcttctagaaattgtatccaaatgcacgcgtttgaaagaatgaatctttcaaaacagtcaagtagaaagcgaaacgtctctttagtataatatgtaaaagtgaaatccCGAGACTATCCCAGAAGAGAAATTTTCTCTTCTGGGAG---A-tt
gi|94929 : aaCGATACAATCTTAGAAGAGAAATTTTCTCTTCTGGGAgccttgctttta
gi|94912 : aaAATATTTTACAAGAGAAATTTTCTCTTCTAGAAA-------TTTGG---TTCAAATGCACGCGTTTGAAAGAATG--AAT-CTT-TCAAAAC---TGTCAAG--TAGAA--AA-GA-A---A-TTT-C-TC---TT--------C--------AG----------AAC---AA----------TA----TT--T------AAAA-GCA---------GG-------GTTGTC----CCAGAA-GAGAAAAT-TTCTCTTCTGGGATTGTCTCGTTggatttcactttta
gi|94899 : AATATTTTACAAGAGAAATTTTCTCTTCTAGAAA---T-TGT---A---TCCAAATGCACGCGTTTGAAAGAATG--AAT-CTT-TCAAAAC---AGTCAAG--TAGAA--AGCGA-A---A-CGT-C-TC---TT--------T--------AG----------TAT---AA----------TA----TG--T------AAAA-GTG---------AA-------ATCCTC----CCAGAA-GAGAAAAT-TTCTCTTCTAAGATTGTATCGTT
gi|94911 : ttttttatgaAATATTTTACAAGAGAAATTTTCTCTTCTAG------A-ACTTTGG---TTCAAATGCACGCGTTTGAAAGAATG--AAT-CTT-TCAAAAC---TGTCAAG--TAGAA--AA-GA-A---A-CTT-C-TC---TT--------C--------AGAAAAA-----TAT---T---------------------T------AAAA-GCA---------GG-------GTTGTC----CGAAAA-GAGAAAAT-TTCTCTTCTGGGATTGTCTC
gi|94913 : AATATTTTACAAGAGAAATTTTCTCTTCTAGAAA-------TTTGG---TTCATATGCATGCGTTTTGAAGAATG--AAT-CTT-TCAAAAC---TGTCAAG--TAGAG--AA-GA-A---A-CTT-C-TC---TT--------C--------AG----------AAT---AA----------AA----TG--T------AAAA-GCA---------GG-------GCTGTC----CCAGAA-GAGAAATT-TTCTCTTCTGGGATTGTCTCGTT
gi|94915 : AATAATTTACAAGAGAAATTTTCTCTTCTAGAAA---T-TGT---G---TCCAATTGCACGCGTTTGAAAGAATG--AAT-CTT-TCAAAAC---AGTCAAG--TAGAA--AG-GA-A---A-CGT-C-TC---TG--------T--------AG----------TAT---AA----------TA----TG--T------AAAA-GTG---------AT-------ATCCTT----CCAGAA-GAGACAAT-TTCTCTTCTAGGATTGTCTC
gi|94910 : AATATTTTACAAGAGAAATTTTCTCTTCTAGAAA---T-TGT---G---TCCAAGTTCACGCGTTTGAAAGAATG--AAT-CTT-TCAAAAC---AGTCAAG--TTGAA--AA-GA-A---A-CGC-CTTC---TT--------C--------GG----------TAT---AA----------TA----AG--T------AAAC-GTG----------G-------GCTCTC----CCAGAA-GAGAAAAA-TTCTCTTCTTGGATTGTCTCGTT
gi|94914 : aaAATATTTCACAAGAGAAATTTTCTGTTATGGAAA-------TTTGG---TTCAAATGCACGCGTTTGAAAGGATG--AAT-CTT-TCAAAAC---TGTCAAA--TAGAAAGAA-GA-A---A-TTT-C-TC---TT--------C--------AG---------------------------------------------AATA-ACA---------AA-------GCCCTC----CCAGAA-GAGAACAT-TTCACTTCTAGGATAGTCTCGTT
gi|94916 : AATATTTTACAAGAGAAATTTTCTCTTCTAGAAA---T-TAT---G---TCCAAATGAA----TTT-----------------T-TCAAAAC---AGTCAAG--TAGAA--AA-AA-A---A-GT--A-TA---TT--------T--------AG----------TAT---AA----------TA----TG--T------AAAA-GCG---------AG-------ATCCTC----CCAGAG-GAGAAAAT-TTCCCTTCTAGGATTGTCTC
gi|94917 : ATATTTTACAAGAGAAATGTTCTGTTCTAGAAA-------TTTGG---TTAAAATTCACGCGTTTGAAAGA-TA--AA--ACTGTCATAAA---TGTCAAG--TAGAA--AA-GA-A---A-CGT-C-TC---TT--------C--------AA----------TAT---AA----------TA----TG--T------AAAAAGCA---------AA-------ACCCTC----CCA-AA-GAGAAAAT-TTCTCTTCTAGGATAGTCTCGTT
gi|94904 : ATCTCAGAAGAGAAATTTTCTTTTCCGGAA--------T---GG--TTT-------CGCTTTT------ACA--GAC-AAT-----A-C---TGTCA------GAA--GA-GA-A---G-TTT-C-TT---TTTCACTTGGC--------AG----------TTT---TGAAATA-----TC----TA--TTCTTTCAAAC-ACGTGCATTTGCAT-------ACCTTTT---CTAGAA-GAGAAAAT-TTCTCTT
gi|94907 : tcttttctgcagatattattttacAGAGAAATTTTCTCTTCTGGAAtggctcgtt
gi|94905 : tttttttatcgataatattttaaaagagaaattttctcttctagaaaaagtgttcaaatgcagacgtttgaatgaatggatatttcaaatctgttaagcacagaaaagaaacttctcttcagtattgtctgtaaaagcgagatccAGAGAAATTTTCTCTTCTGGGAtctaggagtgtctcgtt
gi|94894 : ttttttttgtcgataatattttaaaagtgaagttttcttttctagaaaaagtgttcaaatgaacgcgtttgaaagaatggatattttaagtctgtcaaacagagaagaaatttctctttagtattgtctgtaaaaacgatatccAGAGAAATTTTCTCTTCTGGAA--------T---GG--TTT-------CGCTTTT------ACA--GAC-AAT-----A-C---TGTCA-G--AAGAG--AA-GT-A---T-CTT-T-TCCACTTGA------C--------AG----------TTT---TGAAATACCTACTC----TT--T------CAAACGCG---------TGTATTTGAACACTTTTT-CTAGAA-GAGAAAAT-TTCTCTTtccaggattgtctcgtt
gi|94896 : tcttttctgcggatattttacAGAGAAATTTTCTCTTCTGG--A---A-TG----G---TTT---------CGCTT------ATGCAGAC-AAT----ACTC---T--------CAGAA--GA-GA-A---G-TTT-C-TT---TT--------CTACTTGACAG----------TTT---TGAAATAACTATTC----TT--T------CAAACGCG---------TGCATTTGAACACTTTTTTCTAGAA-GAGAAAAT-TTCTCTTtctgtgattatctcgtt
gi|94912 : tcttttctgcggatattttacAGAGAAATTTTCTCTTCTGGGAC---A-Atctgtgatcatctcgtt
gi|94927 : aatattttacaagagaaattttctcttctagaaatttggttcaaatgcacgcgtttgaaagaatgaatctttcaaaactgtcaagtagaaaagaaatttctcttcagaacaatatttaaaagcagggAGAGAAATTTTCTCTTCTAGGAtctgggattgtctcgtt
gi|94928 : aacgagacaatcccagaAGAGAAATTTTCTCTTCTGGAAgggtctcgctttta
gi|94928 : aacgagacactcctagaAGAGAAAATTTCTCTTCTAG------G-AGT---G---Tggatctcgctttta
gi|94920 : aacgagAGAGAAATTTTCTCTTCTGGGAtctggaaggatctcgctttta
gi|94909 : ttctcttgtcctgcatacttctcatattacaacgagacaatcctggaAGAGAAATTTTCTCTTCTGGAAggatatcgttttta
gi|94925 : tttgaactaaatttctagaagagaaaatttctcttgtaaaatataatcggcagaaaagaaatatctcttacgttgctagcgagaaatttctccatgtcttatcttaacgaagcatttctcttgttctgcatatttctccgattacaacgagataatcacagaAGAGAAATTTTCTCTTCTGGGAC---A-Atggtttcgctttta
gi|94921 : aacgagacaatcccagaAGAGAAATTTTCTCTTCTGGGAccctgctttta
gi|94919 : tattacaacgagacaaAGAGAAATTTTCTCTTCTGGAAtctgggacagccctgctttta
gi|94898 : ttctcttgttcagcatacttctccgattacaacgagatgatcacagaATTTTCTCTTCTGGAA-------GG---G---TTT-------CGCTTTT------ACA--GAC-AAT-----A-C---TGTCA-G--AAGAA--AA-GT-A---G-TTT-C-TT---TTCCACTTGAC--------AGCTGAAATACCTAT---TC----------TT----T---C------AAAT-GCG---------TGCATTTGAACACTTTTT-CTAGAA-GAGAACAT-TTCTCTTtggtttcgctt
gi|94908 : tctttttcgcagatattattttacAATG--GGTGAAT-TTGAATCGCATTTCTAG--AAGAG--AA----A---A-TTT-C-TC---TTGTA-----C--------AA----------TAT---TA----------TC----AG--T------AGAA-
gi|94921 : ttC---TGTCC----CAGAA--GA-GA-A---A-TTTTC-TC---TT--------CT-------GG----------GAT---TG----------TC----Tggaaaaaatgaatctttcaaaactgtcaagtagaaaagaaacgtctattcagtatgatatgtaaaagcagggctttcccagataagaaactttctcttctgggatagtctcgtt
gi|94896 : tattacaacg--CAGAA--GA-GA-A---A-TTTTC-TC---TT--------CTGGAAT--GG----------TTT---CG----------CT----TA--T------GCAG-ACA---------AT-------ACTCTC------AGAA-GAG-AAGT-TTCTTTTCTccctgctttta
gi|94920 : tcttttctgcggatattttacaagagaaattttctcttctagaaaaaagtgttcaaatgcacgcgtttgaaagaatagttatttcaaaactgtcaagt--CAGAA--GA-GA-A---AATTT-C-TC---TTC-------C--------AG----------GAT---TG----------TC----Ttgatcatctcgtt
gi|94918 : ttctcttgtcctgcatacttctcatattacaacg--CAGAA--GA-GA-AC--A-TTT-T-TC---TT--------CT-------GG----------TAT---TG----------TCTCGTTG--T------AATC-GGA---------AA-------ACTATG----C-AGAACAAGAGAAT-ATCTCggaggatatcgttttta
gi|94925 : tac--CAGAA--GA-GA-A---AATTT-C-TC---TT--------CT-------GG----------GAT---TG----------TC----Tgaagggcctcgctttta
gi|94933 : aacg--CAGAA--GA-GACA---A-TTT-C-TC---TT--------CT-------AG----------GAT---TG----------TC----Tggacaaccctgctttta
gi|94905 : aatgGAA--GA-GA-A---A-TTTTC-TC---TT--------CTGGG----AGGA--------TAT---CG----------TT----TT--T------A-----C----------AG-------ACAATA----CTA-AA-GAGAAA-T-TTCTTCTCTGgaaggatatcactttta
gi|94919 : ttttttttgtcgataatattttaaaagtgaagttttcttttctagaaaaagtgttcaaatgaacgcgtttgaaagaatggatattttaagtctgtcaaaTT-C-TC---TTGTT-----C--------AG----------CATACTTC----------TC----CGATT------ACAA--CG---------AG-------ATGATC----ACAGAA-GAGAAATT-TTCTCTTCTGGAATGGTTTCGCTcaggattgtctcgtt
gi|94901 : --T------AACA-ACG---------AG-------ACAATC----ACAGAA-GAGATTTT-TTCTATTCTGGAAGGGTTTCGCTt
gi|94927 : ttttctgttctgcagataatattttacaagagatattttcgcttccagaaaaggtgttcatgtgcacgcgtttgaaagaatggctatttcaaaactgtcaaatggaaaagaaacttctcttctgacagtattgtctgtaaa--T------AAAA-GCG---------AG-------ACCCTC----CTAGAA-GAGAAAAT-TTCTCTTCTGGGATTGTCTCGTT
gi|94928 : --T------AAAA-GCG---------AG-------ATCCTT----CCAGAA-GAGAAAAT-TTCTCTTCTAGGAGTGTCTCGTT
gi|94923 : --T------AAAA-GCA---------AG-------GCTCTC----CCAGAA-GAGAAAAT-TTCTCTTCTGGGATAGTCTCGTT
gi|94937 : --T------AAAA-GCG---------AG-------ATCCTC----CCAGAG-GAGAAAAT-TTCCCTTCTAGGATTGTCTCTTT
gi|94920 : --T------AAAA-ACG---------AT-------ATCCTC----CCAGAA-GAGAAAAT-TTCTCTTCCAGGATTGTCTCGTT
gi|94918 : ttctcttgtcctgcatacttctcatattac--T------AAAA-GCG---------AG-------GCCCTT----CCAGAA-GAGAACAT-TTTTCTTCTGGTATTGTCTCGTT
gi|94909 : tacgagatattctcttgttctgcatagttttccgattac--T------AAAA-GCG---------AA-------ACCATT----CCAGAA-GAGAAAAT-TTCTCTTCTGTGATTATCTCGTT
gi|94925 : tttgaactaaatttctagaagagaaaatttctcttgtaaaatataatcggcagaaaagaaatatctcttacgttgctagcgagaaatttctccatgtcttatcttaacgaagcatttctcttgttctgcatatttctccgattac--T------AAAA-GCA---------GG-------GTTGTC----CCAGAA-GAGAAAAT-TTCTCTTCTGGGATTGTCTCGTT
gi|94929 : --T------AAAA-GTG---------AA-------ATCCTC----CCAGAA-GAGAAAAT-TTCTCTTCTAAGATTGTATCGTT
gi|94921 : --T------AAAA-GCA---------GG-------GCTGTC----CCAGAA-GAGAAATT-TTCTCTTCTGGGATTGTCTCGTT
gi|94936 : tattac--T------AAAA-GCG---------AA-------ACCATT----CCGGAA-AAGAAAAT-TTCTCTTCTGAGATTGGCTCGTT
gi|94933 : --T------AAAA-GTG---------AT-------ATCCTT----CCAGAA-GAGACAAT-TTCTCTTCTAGGATTGTCTCATT
gi|94922 : --T------AAAA-GCG---------AA-------ACCCTT----CCAGAA-TAGAAAAA-ATCTCTTCTGTGATTGTCTCGTT
gi|94922 : ataac--T------AACA-ACG---------AG-------ACAATC----ACAGAA-GAGATTTT-TTCTATTCTGGAAGGGTTTCGCT
gi|94932 : a--T------AAAA-GTG---------AG-------GCACTA----TCACAA-GAGAAAAT-TTCTCTTCCGGGATTGTCTCGTTttta
gi|94934 : --T------AAAA-TCG---------AG-------ATCCTT----CCAGAA-GAGAAAAT-ATCTCTTCTGGGAGTGTCCCATT
gi|94924 : --T------AAAA-GCA---------GG-------GTTGTC----CGAAAA-GAGAAAAT-TTCTCTTCTGGGATTGTCTCATT
gi|94931 : --T------AAAC-GTG---------GG--------CTCTC----CCAGAA-GAGAAAAA-TTCTCTTCTTGGATTGTCTCGTT
gi|94930 : --T------AAAA-GCA---------GG-------GCTTTC----CCAGAT-AAGAAACT-TTCTCTTCTGGGATAGTCTCGTT
gi|94926 : --T------AAAA-GCA---------AG-------GCTCTC----CCAGAA-GAGAAAA-------TTCTGGGATAGTCTCGTT
gi|94935 : ------AAAA-GCA---------AA-------ACCCTC----CCA-AA-GAGAAAAT-TTCTCTTCTAGGATAGTCTCGTT
gi|94919 : AA-GCG---------AA-------ACCATT----CCAGAA-GAGAAAAT-TTCTCTTCTGTGATCATCTCGTT
gi|94902 : ttctcttgttcagcatacttctccgattacA-ACG---------AG-------ACAATC----CCGGAA-GAGAAATT-TTCTCTTGTGATAGTGCCTC
gi|94907 : tcttttctgccgataatattttaaaagagaaattttcttttctagaataagggttcaaatgcatgcatttgaaagaatggataattcaaatctgtcaagcagaaaagaaagttctcttcagtattgtctgtaaaagtA-ACG---------AG-------ACACTC----CTAGAA-GAGAAATT-TTCTCTTCTGGAAGGATCTCGCT
gi|94905 : tttttttatcgataatattttaaaagagaaattttctcttctagaaaaagtgttcaaatgcagacgtttgaatgaatggatatttcaaatctgttaagcacagaaaagaaacttctcttcagtattgtctgtaaaA-ACG---------AG-------ACAATC----CTGGAA-GAGAAATT-TTCTCTTCTGGGAGGATATCGTT
gi|94894 : ttttttttgtcgataatattttaaaagtgaagttttcttttctagaaaaagtgttcaaatgaacgcgtttgaaagaatggatattttaagtctgtcaaacagagaagaaatttctctttagtattgtctgtaaaA-ACG---------AG-------ATAATC----ACAGAA-GAGAAATT-TTCTCTTCTGGAATGGTTTCGCT
gi|94896 : tcttttctgcggatattttacaagagaaattttctcttctagaaaaagtgttcaaatacacgcgtttgaaagagtaggtatttcaaaactgtcaagtggaaaagatacttctcttctgacagtattgtctgtaaaA-ACG---------AG-------ATGATC----ACAGAA-GAGAAATT-TTCTCTTCTGGAATGGTTTCGCT
gi|94904 : tcttttctgcggatattttacaagagaaattttctcttctagaaaaaagtgttcaaatgcacgcgtttgaaagaatagttatttcaaaactgtcaagtagaaaagaaacttctcttctgagagtattgtctgcataA-ACG---------AG-------CCAATC----TCAGAA-GAGAAATT-TTCTTTTCCGGAATGGTTTCGCT
gi|94906 : tcttttctgcagatattattttacaagagaaattttctcttctagaaaaggtatgcaaatgcacgtgtttgaaagaatagatatttcaaaactgccaagtgaaaaagaaacttctcttctgacagtattgtctgtaaaA-ACG---------AG-------ACAATA----CCAGAA-GA-AAAATGTTCTCTTCTGGAAGGGCCTCGCT
gi|94893 : tttcttttcaaataattttcaagagaagttttctcttcaagaaaatgtgtttaaatgcacgcgattgaaagaatggttaattcaaatatgtcaagcagaaaagaaacttctcttcagtattgtctgtaaaA-ACG---------AG-------ACTATC----CCAGAA-GAGAAATT-TTCTCTTCTGGGA
gi|94912 : tcttttctgccgattatattttacaagagaaattttctcttctagaaatttagttcaaatatacgcgtttgaaagaatgaatctttcaaaactgtcaagtggaaaagaaacgtctcttcagtataaaatgtaaaagcaaggctcA-ACG---------AG-------ACAATC----CCAGAA-GAGAAATT-TTCTCTTCTGGGA
gi|94899 : aatattttacaagagaaattttctcttctagaaatttggttcaaatgcacgcgtttgaaagaatgaatctttcaaaactgtcaagtagaaaagaaatttctcttcagaacaatatttaaaagcagggttgA-ACG---------AT-------ACAATC----TTAGAA-GAGAAATT-TTCTCTTCTGGGA
gi|94895 : ttttttatgaaatattttacaagagaaattttctcttctagaaattgtatccaaatgcacgcgtttgaaagaatgaatctttcaaaacagtcaagtagaaagcgaaacgtctctttagtataatatgtaaaagtgaaatccA-ACG---------AG-------ACTATC----CCAGAA-T------T-TTCTCTTCTGGGA
gi|94913 : tcttttctgccgattatattttacaagagaaattttctcttctagaaatttagttcaaattcacgcgtttgaacgaatgaatctttcaaaattgtcaagtagagaagaaacgtcttttcagtataaaatgtaaaagcaaggctcA-ACG---------AG-------ACAATC----CCAGAA-GAGAAAAT-TTCTCTTCTGGGA
gi|94908 : aatattttacaagagaaattttctcttctagaaatttggttcatatgcatgcgttttgaagaatgaatctttcaaaactgtcaagtagagaagaaacttctcttcagaataaaatgtaaaagcagggctgA-ACG---------AG-------ACTATC----CCAGAA-GAGAAAGT-TTCTTATCTGGGA
gi|94910 : ttttctactgataatattgtacaagagaaattttctcttctagaaatgcgattcaaattcacccattggaaaaaatgaatctttcaaaactgtcaagtagaaaagaaacgtctattcagtatgatatgtaaaagcagggcttA-ACG---------AG-------ACAATC----CAAGAA-GAGAATTT-TTCTCTTCTGGGA
gi|94917 : aaaatattttacaagagaaattttctcttctagaaattgtgtccaagttcacgcgtttgaaagaatgaatctttcaaaacagtcaagttgaaaagaaacgccttcttcggtataataagtaaacgtgggctcA-ACG---------AG-------ACTATC----CTAGAA-GAGAAATT-TTCTCTT-TGGGA
gi|94914 : atattttacaagagaaatgttctgttctagaaatttggttaaaattcacgcgtttgaaagataaaactgtcataaatgtcaagtagaaaagaaacgtctcttcaatataatatgtaaaaagcaaaacccA-ACG---------AG-------ACTATC----CTAGAA-GTGAAATG-TTCTCTTCTGGGA
gi|94927 : aatatttcacaagagaaattttctgttatggaaatttggttcaaatgcacgcgtttgaaaggatgaatctttcaaaactgtcaaatagaaagaagaaatttctcttcagaataacaaagcccA-ACG---------AG-------ACAATC----CCAGAA-GAGAAATT-TTCTCTTCTAGGAGGGTCTCGCT
gi|94928 : A-ACG---------AG-------ACACTC----CTAGAA-GAGAAATT-TTCTCTTCTGGAAGGATCTCGCTttta
gi|94923 : A-ACG---------AG-------ACTATC----CCAGAA-GAGAAATT-TTCTCTTCTGGGAttta
gi|94920 : A-ACG---------AG-------ACAATC----CTGGAA-GAGAAATT-TTCTCTTCTGGGAGGATATCGTTgagccttgctttta
gi|94918 : ttctcttgtcctgcatacttctcatattacA-ACG---------AG-------ACAATA----CCAGAA-GA-AAAATGTTCTCTTCTGGAAGGGCCTCGCTttta
gi|94909 : tacgagatattctcttgttctgcatagttttccgattacA-ACG---------AG-------ATAATC----ACAGAA-GAGAAATT-TTCTCTTCTGGAATGGTTTCGCTttta
gi|94925 : tttgaactaaatttctagaagagaaaatttctcttgtaaaatataatcggcagaaaagaaatatctcttacgttgctagcgagaaatttctccatgtcttatcttaacgaagcatttctcttgttctgcatatttctccgattacA-ACG---------AG-------ACAATC----CCAGAA-GAGAAATT-TTCTCTTCTGGGAttta
gi|94929 : A-ACG---------AT-------ACAATC----TTAGAA-GAGAAATT-TTCTCTTCTGGGAcaaccctgctttta
gi|94921 : A-ACG---------AG-------ACAATC----CCAGAA-GAGAAAAT-TTCTCTTCTGGGAggatttcactttta
gi|94935 : tattacA-ACG---------AG-------ACTATC----CTAGAA-GAGAAATT-TTCTCTT-TGGGAcagccctgctttta
gi|94936 : A-ACG---------AG-------CCAATC----TCAGAA-GAGAAATT-TTCTTTTCCGGAATGGTTTCGCTgggttttgctttt
gi|94932 : A-ACG---------AG-------ACAATC----CCGGAA-GAGAAATT-TTCTCTTGTGATAGTGCCTCttta
gi|94931 : A-ACG---------AG-------ACAATC----CAAGAA-GAGAATTT-TTCTCTTCTGGGAactttta
gi|94930 : A-ACG---------AG-------ACTATC----CCAGAA-GAGAAAGT-TTCTTATCTGGGAgagcccacgttta
gi|94926 : A-ACG---------AG-------ACTATC----CCAGAA-T------T-TTCTCTTCTGGGAaagccctgctttta
gi|94903 : G---------GG-------ACACTC----CCAGAA-GAGATATT-TTCTCTTCTGGAAGGATCTCGgagccttgctttta
gi|94911 : ttgtttttgtcgataatattttagaacagaaaatttcttttctagaaaaagtgttcaaatgcagacgtttgaaagaatggatatttcaaatctgtcaagcagaaaagaaacttctcttcagtgttgtctgtaaaatG---------AG-------ACAATC----CCAGAA-GAGAAATT-TTCTCTTTTCGGA
gi|94915 : aatattttacaagagaaattttctcttctagaactttggttcaaatgcacgcgtttgaaagaatgaatctttcaaaactgtcaagtagaaaagaaacttctcttcagaaaaatatttaaaagcagggttgG---------AG-------ACAATC----CTAGAA-GAGAAATT-GTCTCTTCTGGAA
gi|94916 : aataatttacaagagaaattttctcttctagaaattgtgtccaattgcacgcgtttgaaagaatgaatctttcaaaacagtcaagtagaaaggaaacgtctctgtagtataatatgtaaaagtgatatccG---------AG-------ACAATC----CTAGAA-GGGAAATT-TTCTCCTCTGGGAGGATCTCGCT
gi|94937 : aatattttacaagagaaattttctcttctagaaattatgtccaaatgaatttttcaaaacagtcaagtagaaaaaaaagtatatttagtataatatgtaaaG---------AG-------ACAATC----CTAGAA-GGGAAATT-TTCTCCTCTGGGAGGATCTCGCT
gi|94933 : aaaG---------AG-------ACAATC----CTAGAA-GAGAAATT-GTCTCTTCTGGAAttta
gi|94934 : aatG---------GG-------ACACTC----CCAGAA-GAGATATT-TTCTCTTCTGGAAGGATCTCGggatatcactttta
gi|94924 : aatG---------AG-------ACAATC----CCAGAA-GAGAAATT-TTCTCTTTTCGGAatttta
gi|94895 : aatTT----CTAGAA-GAGAAAAT-TTCTCTTcaaccctgctttta
gi|94897 : tcttttctgccgattatattttacTT----CTAGAA-GAGAAAAT-TTCCCTTatttagttcaaattcacgcgtttgaacgaatgaatctttcaaaattgtcaagtagagaagaaacgtcttttcagtataaaatgtaaaagcaaggctctcccagaagagaaaattctgggatagtctcgtt
Alignments
lowQualScore : 2222222 1111
lowQualScore : 0 1 1 7777777 6 9 5 22 22 1 222 1 6666 3333 44444 77777 3 11 0 22 1 1
lowQualScore : . . . ....... . . . .. .. . ... . .... .... ..... ..... . .. . .. . .
lowQualScore : 4 6 6 5555555 4 6 0 33 33 7 999 6 4444 4444 00000 22222 0 22 9 00 0 0
consensus : TCTTTTCTGCCGATAATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-A--N--G-T-G-TTCAAATGCACGCGTTTGAAAGAATGGATCTTTCAAAACTGTCAAGTA--GAA--AA-GAA---ACTTC-TCTT----C----AG-----TAT---NGTCTG--T-AAAAGCGAGACCCTCCCAGAAGAGAAAATTTCTCTTCTGGGATTGTCTCGTT
Reference ( family-496 ) : TCTTTTCTGCCGATAATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-A--A--G-T-G-TTCAAATGCACGCGTTTGAAAGAATGGATATTTCAAAACTGTCAAGTA--GAA--AA-GAA---ACTTC-TCTT----C----AG-----TAT---TGTCTG--T-AAAAGCGAGACNNTCCCAGAAGAGAAANTTTCTCTTCTGGGATNGTCTCGTT
gi|94893 : TCTTTTCTGCCGATTATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-A--T--T-TAG-TTCAAATATACGCGTTTGAAAGAATGAATCTTTCAAAACTGTCAAGTG--GAA--AA-GAA---ACGTC-TCTT----C----AG-----TAT---AAAATG--T-AAAAGCAAGGCTCTCCCAGAAGAGAAAATTTCTCTTCTGGGATAGTCTCGTT
gi|94894 : TCTTTTCTGCGGATA---TTTTACAAGAGAAATTTTCTCTTCTAG-AA-A--AA-G-T-G-TTCAAATACACGCGTTTGAAAGAGTAGGTATTTCAAAACTGTCAAGTG--GAA--AA-GAT---ACTTC-TCTTCTGAC----AG-----TAT---TGTCTG--T-AAAAGCGAAACCATTCCAGAAGAGAAAATTTCTCTTCTGTGATTATCTCGTT
gi|94895 : TCTTTTCTGCCGATTATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-A--T--T-TAG-TTCAAATTCACGCGTTTGAACGAATGAATCTTTCAAAATTGTCAAGTA--GAG--AA-GAA---ACGTC-TTTT----C----AG-----TAT---AAAATG--T-AAAAGCAAGGCTCTCCCAGAAGAGAAAA------TTCTGGGATAGTCTCGTT
gi|94896 : TCTTTTCTGCGGATA---TTTTACAAGAGAAATTTTCTCTTCTAG-AA-A--AAAG-T-G-TTCAAATGCACGCGTTTGAAAGAATAGTTATTTCAAAACTGTCAAGTA--GAA--AA-GAA---ACTTC-TCTT----CTGAGAG-----TAT---TGTCTG--C-ATAAGCGAAACCATTCCAGAAGAGAAAATTTCTCTTCTGTGATCATCTCGTT
gi|94897 : TTTTTTCTGTCGATAATATTTTACAAGGGAAATTTTCTCTTCTAG-AA-A--T--T-T-GGTTCAAGTTCACGCGTTTGAAAGAATGACTCTTTCAAAACTGTCAAGTA--GAA--AA-GAA---ACGTC-TCTT----C----AG-----TAT---AATATG--T-AAAAGCAA
gi|94898 : TCTTTTTCGCAGATATTATTTTACAAGAGAAATGTTCTCTTCTAGAAA-A--A--G-T-G-TTCAAATGCACGCATTTGAAAGAATAGGTATTTC--AGCTGTCAAGTG--GAA--AA-GAAACTACTTT-TCTTCTGAC----AG-----TAT---TGTCTG--T-AAAAGCGAAACCCTTCCAGAAGAGAAAAT
gi|94899 : AATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-A--TT-G-T-A-TCCAAATGCACGCGTTTGAAAGAATGAATCTTTCAAAACAGTCAAGTA--GAA--AGCGAA---ACGTC-TCTT----T----AG-----TAT---AATATG--T-AAAAGTGAAATCCTCCCAGAAGAGAAAATTTCTCTTCTAAGATTGTATCGTT
gi|94900 : ttttttatgaTCTTTTCTGCCGATAATATTTTACGAGAGAAATTTTCTCTTCTAG-AA-A--AA-G-T-G-TTCAAATGCGCGCGTTTGAAAGAATGGATAATTCAAATCTGTCAAGCA--GAA--AA-GAA---ACTTC-TCTT----C----AG-----TAT---TGTCTG--T-AAAAGCGAGACCCTCCTAGAAGAGAAAATTTCTCTTCTGGGATTGTCTCGTT
gi|94901 : TCTGTTCTGCAGATAATATTTTACAAGAGATATTTTCGCTTCCAG-AA-A--A--GGT-G-TTCATGTGCACGCGTTTGAAAGAATGGCTATTTCAAAACTGTCAAATG--GAA--AA-GAA---ACTTC-TCTTCTGAC----AG-----TAT---TGTCTG--T-AAAAGCGAAACCCTTCCAGAATAGAAAAAATCTCTTCTGTGATTGTCTCGTT
gi|94902 : tttTCTTTTCTGCCGATAATATTTTAAAAGAGAAATTTTCTTTTCTAG-AATA--A--G-G-G-TTCAAATGCATGCATTTGAAAGAATGGATAATTCAAATCTGTCAAGCA--GAA--AA-GAA---AGTTC-TCTT----C----AG-----TAT---TGTCTG--T-AAAAGTGAGGCACTATCACAAGAGAAAATTTCTCTTCCGGGATTGTCTCGTTgtta
gi|94903 : TTTTTGTCGATAATATTTTAGAACAGAAAATTTCTTTTCTAG-AA-A--AA-G-T-G-TTCAAATGCAGACGTTTGAAAGAATGGATATTTCAAATCTGTCAAGCA--GAA--AA-GAA---ACTTC-TCTT----C----AG-----TGT---TGTCTG--T-AAAATCGAGATCCTTCCAGAAGAGAAAATATCTCTTCTGGGAGTGTCCC
gi|94904 : ttgTCTTTTCTGCAGATATTATTTTACAAGAGAAATTTTCTCTTCTAG-AA-A--A--GGT-A-TGCAAATGCACGTGTTTGAAAGAATAGATATTTCAAAACTGCCAAGTG--AAA--AA-GAA---ACTTC-TCTTCTGAC----AG-----TAT---TGTCTG--T-AAAAGCGAAACCATTCCGGAAAAGAAAATTTCTCTTCTGAGATTGGCTCGTT
gi|94905 : TTTTTTTTGTCGATAATATTTTAAAAGTGAAGTTTTCTTTTCTAG-AA-A--AA-G-T-G-TTCAAATGAACGCGTTTGAAAGAATGGATATTTTAAGTCTGTCAAACA--GAG--AA-GAA---ATTTC-TCTT----T----AG-----TAT---TGTCTG--T-AAAAACGATATCCTCCCAGAAGAGAAAATTTCTCTTCCAGGATTGTCTCGTT
gi|94906 : TCTTTTC-----A-AATAATTTTCAAGAGAAGTTTTCTCTTCAAG-AA-A--AT-G-T-G-TTTAAATGCACGCGATTGAAAGAATGGTTAATTCAAATATGTCAAGCA--GAA--AA-GAA---ACTTC-TCTT----C----AG-----TAT---TGTCTG--T-AAAAGCGAGGCCCTTCCAGAAGAGAACATTTTTCTTCTGGTATTGTCTCGTT
gi|94907 : ttTTTTTTATCGATAATATTTTAAAAGAGAAATTTTCTCTTCTAG-AA-A--AA-G-T-G-TTCAAATGCAGACGTTTGAATGAATGGATATTTCAAATCTGTTAAGCACAGAA--AA-GAA---ACTTC-TCTT----C----AG-----TAT---TGTCTG--T-AAAAGCGAGATCCTTCCAGAAGAGAAAATTTCTCTTCTAGGAGTGTCTCGTT
gi|94908 : tTTTTCTACTGATAATATTGTACAAGAGAAATTTTCTCTTCTAG-AA-A--T--G-C-GATTCAAATTCACCCATTGGAAAAAATGAATCTTTCAAAACTGTCAAGTA--GAA--AA-GAA---ACGTC-TATT----C----AG-----TAT---GATATG--T-AAAAGCAGGGCTTTCCCAGATAAGAAACTTTCTCTTCTGGGATAGTCTCGTT
gi|94909 : TCTTTTCTGCCGATTATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-A--T--T-TAG-TTCAAA
gi|94909 : --T-AAAAGCGAAACCATTCCAGAAGAGAAAATTTCTCTTCTGTGATTATCTCGTTaatatctcttacgttgctagcgagaaatttctccatgtcttatcttaacgaagcatttctcttgttctgcatatttctccgattacaacgagataatcacagaagagaaattttctcttctggaatggtttcgctttta
gi|94910 : tttgaactaaatttctagaagagaaaatttctcttgtaaaatataatcggcagaaaagaaatatctcttacgttgctagcgagaaatttctccatgtcttatcttaacgaagcatttctcttgttctgcatatttctccgattacAATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-A--TT-G-T-G-TCCAAGTTCACGCGTTTGAAAGAATGAATCTTTCAAAACAGTCAAGTT--GAA--AA-GAA---ACGCCTTCTT----C----GG-----TAT---AATAAG--T-AAACGTG-GGCTCTCCCAGAAGAGAAAAATTCTCTTCTTGGATTGTCTCGTT
gi|94911 : aaAATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-C--T--T-T-GGTTCAAATGCACGCGTTTGAAAGAATGAATCTTTCAAAACTGTCAAGTA--GAA--AA-GAA---ACTTC-TCTT----C----AGAAAAATAT---T-------T-AAAAGCAGGGTTGTCCGAAAAGAGAAAATTTCTCTTCTGGGATTGTCTC
gi|94912 : AATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-A--T--T-T-GGTTCAAATGCACGCGTTTGAAAGAATGAATCTTTCAAAACTGTCAAGTA--GAA--AA-GAA---ATTTC-TCTT----C----AG-----AAC---AATATT--T-AAAAGCAGGGTTGTCCCAGAAGAGAAAATTTCTCTTCTGGGATTGTCTCGTT
gi|94913 : AATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-A--T--T-T-GGTTCATATGCATGCGTTTTGAAGAATGAATCTTTCAAAACTGTCAAGTA--GAG--AA-GAA---ACTTC-TCTT----C----AG-----AAT---AAAATG--T-AAAAGCAGGGCTGTCCCAGAAGAGAAATTTTCTCTTCTGGGATTGTCTCGTT
gi|94914 : AATATTTCACAAGAGAAATTTTCTGTTATGG-AA-A--T--T-T-GGTTCAAATGCACGCGTTTGAAAGGATGAATCTTTCAAAACTGTCAAATA--GAAAGAA-GAA---ATTTC-TCTT----C----AG---------------------AATAACAAAGCCCTCCCAGAAGAGAACATTTCACTTCTAGGATAGTCTCGTT
gi|94915 : AATAATTTACAAGAGAAATTTTCTCTTCTAG-AA-A--TT-G-T-G-TCCAATTGCACGCGTTTGAAAGAATGAATCTTTCAAAACAGTCAAGTA--GAA--AG-GAA---ACGTC-TCTG----T----AG-----TAT---AATATG--T-AAAAGTGATATCCTTCCAGAAGAGACAATTTCTCTTCTAGGATTGTCTC
gi|94916 : AATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-ATTA----T-G-TCCAAATG--------------AAT---T-TTTCAAAACAGTCAAGTA--GAA--AA-AAA---AGT-A-TATT----T----AG-----TAT---AATATG--T-AAAAGCGAGATCCTCCCAGAGGAGAAAATTTCCCTTCTAGGATTGTCTC
gi|94917 : ATATTTTACAAGAGAAATGTTCTGTTCTAG-AA-A--T--T-TGG-TTAAAATTCACGCGTTTGAAAG-ATAAAACTGTCATAAATGTCAAGTA--GAA--AA-GAA---ACGTC-TCTT----C----AA-----TAT---AATATG--TAAAAAGCAAAACCCTCCCA-AAGAGAAAATTTCTCTTCTAGGATAGTCTCGTT
gi|94918 : --T-AAAAGCGAGGCCCTTCCAGAAGAGAACATTTTTCTTCTGGTATTGTCTCGTT
gi|94919 : tacgagatattctcttgttctgcatagttttccgattacTTC-TCTTGTT-C----AG-----CATACTTCTCCGATT-ACAA-CGAGATGATCACAGAAGAGAAATTTTCTCTTCTGGAATGGTTTCGCT
gi|94919 : AAGCGAAACCATTCCAGAAGAGAAAATTTCTCTTCTGTGATCATCTCGTTt
gi|94920 : ttctcttgttcagcatacttctccgattac--T-AAAAACGATATCCTCCCAGAAGAGAAAATTTCTCTTCCAGGATTGTCTCGTT
gi|94921 : ttctcttgtcctgcatacttctcatattac--T-AAAAGCAGGGCTGTCCCAGAAGAGAAATTTTCTCTTCTGGGATTGTCTCGTT
gi|94922 : tattac--T-AAAAGCGAAACCCTTCCAGAATAGAAAAAATCTCTTCTGTGATTGTCTCGTT
gi|94923 : ataac--T-AAAAGCAAGGCTCTCCCAGAAGAGAAAATTTCTCTTCTGGGATAGTCTCGTT
gi|94924 : --T-AAAAGCAGGGTTGTCCGAAAAGAGAAAATTTCTCTTCTGGGATTGTCTCATT
gi|94925 : --T-AAAAGCAGGGTTGTCCCAGAAGAGAAAATTTCTCTTCTGGGATTGTCTCGTT
gi|94926 : --T-AAAAGCAAGGCTCTCCCAGAAGAGAAAA------TTCTGGGATAGTCTCGTT
gi|94927 : --T-AAAAGCGAGACCCTCCTAGAAGAGAAAATTTCTCTTCTGGGATTGTCTCGTT
gi|94928 : --T-AAAAGCGAGATCCTTCCAGAAGAGAAAATTTCTCTTCTAGGAGTGTCTCGTT
gi|94929 : --T-AAAAGTGAAATCCTCCCAGAAGAGAAAATTTCTCTTCTAAGATTGTATCGTT
gi|94930 : --T-AAAAGCAGGGCTTTCCCAGATAAGAAACTTTCTCTTCTGGGATAGTCTCGTT
gi|94931 : --T-AAACGTGGG-CTCTCCCAGAAGAGAAAAATTCTCTTCTTGGATTGTCTCGTT
gi|94932 : --T-AAAAGTGAGGCACTATCACAAGAGAAAATTTCTCTTCCGGGATTGTCTCGTT
gi|94933 : --T-AAAAGTGATATCCTTCCAGAAGAGACAATTTCTCTTCTAGGATTGTCTCATT
gi|94934 : --T-AAAATCGAGATCCTTCCAGAAGAGAAAATATCTCTTCTGGGAGTGTCCCATT
gi|94935 : -AAAAGCAAAACCCTCCCA-AAGAGAAAATTTCTCTTCTAGGATAGTCTCGTT
gi|94936 : --T-AAAAGCGAAACCATTCCGGAAAAGAAAATTTCTCTTCTGAGATTGGCTCGTT
gi|94937 : --T-AAAAGCGAGATCCTCCCAGAGGAGAAAATTTCCCTTCTAGGATTGTCTCTTT
Alignments
lowQualScore : 22222 1111
lowQualScore : 0 1 1 22222 6 9 2 22 22 1 222 1 8888 3333 1 5555 3333 11 0 0
lowQualScore : . . . ..... . . . .. .. . ... . .... .... . .... .... .. . .
lowQualScore : 4 6 6 00000 4 6 1 33 33 7 999 5 5555 3333 5 8888 3333 22 9 9
consensus : TCTTTTCTGCCGATAATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-AN--G-T-G-TTCAAATGCACGCGTTTGAAAGAATGGATNTTTCAAAACTGTCAAGTA--GAA--AA-GAA---ACTTC-TCTT----C----AGTATNGT---NT----G--T-AAAAGCGAGACCCTCCCAGAAGAGAAAAT-TTCTCTTCTGGGATTGTCTCGTT
Reference ( family-496 ) : TCTTTTCTGCCGATAATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-AN--G-T-G-TTCAAATGCACGCGTTTGAAAGAATGGATCTTTCAAAACTGTCAAGTA--GAA--AA-GAA---ACTTC-TCTT----C----AGTATNGT---CT----G--T-AAAAGCGAGACCCTCCCAGAAGAGAAAAT-TTCTCTTCTGGGATTGTCTCGTT
gi|94893 : TCTTTTCTGCCGATTATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-AT--T-TAG-TTCAAATATACGCGTTTGAAAGAATGAATCTTTCAAAACTGTCAAGTG--GAA--AA-GAA---ACGTC-TCTT----C----AGTATAAA---AT----G--T-AAAAGCAAGGCTCTCCCAGAAGAGAAAAT-TTCTCTTCTGGGATAGTCTCGTT
gi|94894 : TCTTTTCTGCGGATA---TTTTACAAGAGAAATTTTCTCTTCTAG-AA-AAA-G-T-G-TTCAAATACACGCGTTTGAAAGAGTAGGTATTTCAAAACTGTCAAGTG--GAA--AA-GAT---ACTTC-TCTTCTGAC----AGTATTGT---CT----G--T-AAAAGCGAAACCATTCCAGAAGAGAAAAT-TTCTCTTCTGTGATTATCTCGTT
gi|94895 : TCTTTTCTGCCGATTATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-AT--T-TAG-TTCAAATTCACGCGTTTGAACGAATGAATCTTTCAAAATTGTCAAGTA--GAG--AA-GAA---ACGTC-TTTT----C----AGTATAAA---AT----G--T-AAAAGCAAGGCTCTCCCAGAAGAGAAAA-------TTCTGGGATAGTCTCGTT
gi|94896 : TCTTTTCTGCGGATA---TTTTACAAGAGAAATTTTCTCTTCTAG-AA-AAAAG-T-G-TTCAAATGCACGCGTTTGAAAGAATAGTTATTTCAAAACTGTCAAGTA--GAA--AA-GAA---ACTTC-TCTT----CTGAGAGTATTGT---CT----G--C-ATAAGCGAAACCATTCCAGAAGAGAAAAT-TTCTCTTCTGTGATCATCTCGTT
gi|94897 : TTTTTTCTGTCGATAATATTTTACAAGGGAAATTTTCTCTTCTAG-AA-AT--T-T-GGTTCAAGTTCACGCGTTTGAAAGAATGACTCTTTCAAAACTGTCAAGTA--GAA--AA-GAA---ACGTC-TCTT----C----AGTATAAT---AT----G--T-AAAAGCAA
gi|94898 : TCTTTTTCGCAGATATTATTTTACAAGAGAAATGTTCTCTTCTAGAAA-AA--G-T-G-TTCAAATGCACGCATTTGAAAGAATAGGTATTTC--AGCTGTCAAGTG--GAA--AA-GAAACTACTTT-TCTTCTGAC----AGTATTGT---CT----G--T-AAAAGCGAAACCCTTCCAGAAGAGAAAAT-
gi|94899 : AATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-ATT-G-T-A-TCCAAATGCACGCGTTTGAAAGAATGAATCTTTCAAAACAGTCAAGTA--GAA--AGCGAA---ACGTC-TCTT----T----AGTATAAT---AT----G--T-AAAAGTGAAATCCTCCCAGAAGAGAAAAT-TTCTCTTCTAAGATTGTATCGTT
gi|94900 : ttttttatgaTCTTTTCTGCCGATAATATTTTACGAGAGAAATTTTCTCTTCTAG-AA-AAA-G-T-G-TTCAAATGCGCGCGTTTGAAAGAATGGATAATTCAAATCTGTCAAGCA--GAA--AA-GAA---ACTTC-TCTT----C----AGTATTGT---CT----G--T-AAAAGCGAGACCCTCCTAGAAGAGAAAAT-TTCTCTTCTGGGATTGTCTCGTT
gi|94901 : TCTGTTCTGCAGATAATATTTTACAAGAGATATTTTCGCTTCCAG-AA-AA--GGT-G-TTCATGTGCACGCGTTTGAAAGAATGGCTATTTCAAAACTGTCAAATG--GAA--AA-GAA---ACTTC-TCTTCTGAC----AGTATTGT---CT----G--T-AAAAGCGAAACCCTTCCAGAATAGAAAAA-ATCTCTTCTGTGATTGTCTCGTT
gi|94902 : tttTCTTTTCTGCCGATAATATTTTAAAAGAGAAATTTTCTTTTCTAG-AATAA--G-G-G-TTCAAATGCATGCATTTGAAAGAATGGATAATTCAAATCTGTCAAGCA--GAA--AA-GAA---AGTTC-TCTT----C----AGTATTGT---CT----G--T-AAAAGTGAGGCACTATCACAAGAGAAAAT-TTCTCTTCCGGGATTGTCTCGTTgtta
gi|94903 : TTTTTGTCGATAATATTTTAGAACAGAAAATTTCTTTTCTAG-AA-AAA-G-T-G-TTCAAATGCAGACGTTTGAAAGAATGGATATTTCAAATCTGTCAAGCA--GAA--AA-GAA---ACTTC-TCTT----C----AGTGTTGT---CT----G--T-AAAATCGAGATCCTTCCAGAAGAGAAAAT-ATCTCTTCTGGGAGTGTCCC
gi|94904 : ttgTCTTTTCTGCAGATATTATTTTACAAGAGAAATTTTCTCTTCTAG-AA-AA--GGT-A-TGCAAATGCACGTGTTTGAAAGAATAGATATTTCAAAACTGCCAAGTG--AAA--AA-GAA---ACTTC-TCTTCTGAC----AGTATTGT---CT----G--T-AAAAGCGAAACCATTCCGGAAAAGAAAAT-TTCTCTTCTGAGATTGGCTCGTT
gi|94905 : TTTTTTTTGTCGATAATATTTTAAAAGTGAAGTTTTCTTTTCTAG-AA-AAA-G-T-G-TTCAAATGAACGCGTTTGAAAGAATGGATATTTTAAGTCTGTCAAACA--GAG--AA-GAA---ATTTC-TCTT----T----AGTATTGT---CT----G--T-AAAAACGATATCCTCCCAGAAGAGAAAAT-TTCTCTTCCAGGATTGTCTCGTT
gi|94906 : TCTTTTC-----A-AATAATTTTCAAGAGAAGTTTTCTCTTCAAG-AA-AAT-G-T-G-TTTAAATGCACGCGATTGAAAGAATGGTTAATTCAAATATGTCAAGCA--GAA--AA-GAA---ACTTC-TCTT----C----AGTATTGT---CT----G--T-AAAAGCGAGGCCCTTCCAGAAGAGAACAT-TTTTCTTCTGGTATTGTCTCGTT
gi|94907 : ttTTTTTTATCGATAATATTTTAAAAGAGAAATTTTCTCTTCTAG-AA-AAA-G-T-G-TTCAAATGCAGACGTTTGAATGAATGGATATTTCAAATCTGTTAAGCACAGAA--AA-GAA---ACTTC-TCTT----C----AGTATTGT---CT----G--T-AAAAGCGAGATCCTTCCAGAAGAGAAAAT-TTCTCTTCTAGGAGTGTCTCGTT
gi|94908 : tTTTTCTACTGATAATATTGTACAAGAGAAATTTTCTCTTCTAG-AA-AT--G-C-GATTCAAATTCACCCATTGGAAAAAATGAATCTTTCAAAACTGTCAAGTA--GAA--AA-GAA---ACGTC-TATT----C----AGTATGAT---AT----G--T-AAAAGCAGGGCTTTCCCAGATAAGAAACT-TTCTCTTCTGGGATAGTCTCGTT
gi|94909 : TCTTTTCTGCCGATTATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-AT--T-TAG-TTCAAA
gi|94909 : --T-AAAAGCGAAACCATTCCAGAAGAGAAAAT-TTCTCTTCTGTGATTATCTCGTTaatatctcttacgttgctagcgagaaatttctccatgtcttatcttaacgaagcatttctcttgttctgcatatttctccgattacaacgagataatcacagaagagaaattttctcttctggaatggtttcgctttta
gi|94910 : tttgaactaaatttctagaagagaaaatttctcttgtaaaatataatcggcagaaaagaaatatctcttacgttgctagcgagaaatttctccatgtcttatcttaacgaagcatttctcttgttctgcatatttctccgattacAATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-ATT-G-T-G-TCCAAGTTCACGCGTTTGAAAGAATGAATCTTTCAAAACAGTCAAGTT--GAA--AA-GAA---ACGCCTTCTT----C----GGTATAAT---AA----G--T-AAACGTG-GGCTCTCCCAGAAGAGAAAAA-TTCTCTTCTTGGATTGTCTCGTT
gi|94911 : aaAATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-CT--T-T-GGTTCAAATGCACGCGTTTGAAAGAATGAATCTTTCAAAACTGTCAAGTA--GAA--AA-GAA---ACTTC-TCTT----C----AGAAAAAT---AT----T--T-AAAAGCAGGGTTGTCCGAAAAGAGAAAAT-TTCTCTTCTGGGATTGTCTC
gi|94912 : AATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-AT--T-T-GGTTCAAATGCACGCGTTTGAAAGAATGAATCTTTCAAAACTGTCAAGTA--GAA--AA-GAA---ATTTC-TCTT----C----AGAACAAT---AT----T--T-AAAAGCAGGGTTGTCCCAGAAGAGAAAAT-TTCTCTTCTGGGATTGTCTCGTT
gi|94913 : AATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-AT--T-T-GGTTCATATGCATGCGTTTTGAAGAATGAATCTTTCAAAACTGTCAAGTA--GAG--AA-GAA---ACTTC-TCTT----C----AGAATAAA---AT----G--T-AAAAGCAGGGCTGTCCCAGAAGAGAAATT-TTCTCTTCTGGGATTGTCTCGTT
gi|94914 : AATATTTCACAAGAGAAATTTTCTGTTATGG-AA-AT--T-T-GGTTCAAATGCACGCGTTTGAAAGGATGAATCTTTCAAAACTGTCAAATA--GAAAGAA-GAA---ATTTC-TCTT----C----AG--------------------AATAACAAAGCCCTCCCAGAAGAGAACAT-TTCACTTCTAGGATAGTCTCGTT
gi|94915 : AATAATTTACAAGAGAAATTTTCTCTTCTAG-AA-ATT-G-T-G-TCCAATTGCACGCGTTTGAAAGAATGAATCTTTCAAAACAGTCAAGTA--GAA--AG-GAA---ACGTC-TCTG----T----AGTATAAT---AT----G--T-AAAAGTGATATCCTTCCAGAAGAGACAAT-TTCTCTTCTAGGATTGTCTC
gi|94916 : AATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-ATT-A-T-G-TCCAAATG------------------AATTTTTCAAAACAGTCAAGTA--GAA--AA-AAA---AGT-A-TATT----T----AGTATAAT---AT----G--T-AAAAGCGAGATCCTCCCAGAGGAGAAAAT-TTCCCTTCTAGGATTGTCTC
gi|94917 : ATATTTTACAAGAGAAATGTTCTGTTCTAG-AA-AT--T-TGG-TTAAAATTCACGCGTTTGAAAG-ATAAAACTGTCATAAATGTCAAGTA--GAA--AA-GAA---ACGTC-TCTT----C----AATATAAT---AT----G--TAAAAAGCAAAACCCTCCCA-AAGAGAAAAT-TTCTCTTCTAGGATAGTCTCGTT
gi|94918 : TTC-TCTTGTT-C----TGCATAGT---TTTCCGA--T-TACAACGAGACAATACCAGAAGA-AAAATGTTCTCTTCTGGAAGGGCCTCGCT
gi|94918 : tacgagata--T-AAAAGCGAGGCCCTTCCAGAAGAGAACAT-TTTTCTTCTGGTATTGTCTCGTTttta
gi|94919 : tacgagatattctcttgttctgcatagttttccgattacTTC-TCTTGTT-C----AGCATACTTCTCC----GATT-ACAA-CGAGATGATCACAGAAGAGAAATT-TTCTCTTCTGGAATGGTTTCGCT
gi|94919 : AAGCGAAACCATTCCAGAAGAGAAAAT-TTCTCTTCTGTGATCATCTCGTTt
gi|94920 : ttctcttgttcagcatacttctccgattac--T-AAAAACGATATCCTCCCAGAAGAGAAAAT-TTCTCTTCCAGGATTGTCTCGTT
gi|94921 : ttctcttgtcctgcatacttctcatattac--T-AAAAGCAGGGCTGTCCCAGAAGAGAAATT-TTCTCTTCTGGGATTGTCTCGTT
gi|94922 : tattac--T-AAAAGCGAAACCCTTCCAGAATAGAAAAA-ATCTCTTCTGTGATTGTCTCGTT
gi|94923 : ataac--T-AAAAGCAAGGCTCTCCCAGAAGAGAAAAT-TTCTCTTCTGGGATAGTCTCGTT
gi|94924 : --T-AAAAGCAGGGTTGTCCGAAAAGAGAAAAT-TTCTCTTCTGGGATTGTCTCATT
gi|94925 : --T-AAAAGCAGGGTTGTCCCAGAAGAGAAAAT-TTCTCTTCTGGGATTGTCTCGTT
gi|94926 : --T-AAAAGCAAGGCTCTCCCAGAAGAGAAAA-------TTCTGGGATAGTCTCGTT
gi|94927 : --T-AAAAGCGAGACCCTCCTAGAAGAGAAAAT-TTCTCTTCTGGGATTGTCTCGTT
gi|94928 : --T-AAAAGCGAGATCCTTCCAGAAGAGAAAAT-TTCTCTTCTAGGAGTGTCTCGTT
gi|94929 : --T-AAAAGTGAAATCCTCCCAGAAGAGAAAAT-TTCTCTTCTAAGATTGTATCGTT
gi|94930 : --T-AAAAGCAGGGCTTTCCCAGATAAGAAACT-TTCTCTTCTGGGATAGTCTCGTT
gi|94931 : --T-AAACGTGGG-CTCTCCCAGAAGAGAAAAA-TTCTCTTCTTGGATTGTCTCGTT
gi|94932 : --T-AAAAGTGAGGCACTATCACAAGAGAAAAT-TTCTCTTCCGGGATTGTCTCGTT
gi|94933 : --T-AAAAGTGATATCCTTCCAGAAGAGACAAT-TTCTCTTCTAGGATTGTCTCATT
gi|94934 : --T-AAAATCGAGATCCTTCCAGAAGAGAAAAT-ATCTCTTCTGGGAGTGTCCCATT
gi|94935 : -AAAAGCAAAACCCTCCCA-AAGAGAAAAT-TTCTCTTCTAGGATAGTCTCGTT
gi|94936 : --T-AAAAGCGAAACCATTCCGGAAAAGAAAAT-TTCTCTTCTGAGATTGGCTCGTT
gi|94937 : --T-AAAAGCGAGATCCTCCCAGAGGAGAAAAT-TTCCCTTCTAGGATTGTCTCTTT
Alignments
lowQualScore : 22222 1111
lowQualScore : 0 1 1 22222 6 9 1 22 22 1 222 1 6666 3333 1 1 3333 0 0
lowQualScore : . . . ..... . . . .. .. . ... . .... .... . . .... . .
lowQualScore : 4 6 6 00000 4 6 0 33 33 7 999 6 4444 4444 6 6 4444 9 9
consensus : TCTTTTCTGCCGATAATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-AN--G-T-G-TTCAAATGCACGCGTTTGAAAGAATGGATNTTTCAAAACTGTCAAGTA--GAA--AA-GAA---ACTTC-TCTT----C----AGTATNGTNT----GT-AAAAGCGAGACCCTCCCAGAAGAGAAAAT-TTCTCTTCTGGGATTGTCTCGTT
Reference ( family-496 ) : TCTTTTCTGCCGATAATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-AN--G-T-G-TTCAAATGCACGCGTTTGAAAGAATGGATNTTTCAAAACTGTCAAGTA--GAA--AA-GAA---ACTTC-TCTT----C----AGTATNGTNT----GT-AAAAGCGAGACCCTCCCAGAAGAGAAAAT-TTCTCTTCTGGGATTGTCTCGTT
gi|94893 : TCTTTTCTGCCGATTATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-AT--T-TAG-TTCAAATATACGCGTTTGAAAGAATGAATCTTTCAAAACTGTCAAGTG--GAA--AA-GAA---ACGTC-TCTT----C----AGTATAAAAT----GT-AAAAGCAAGGCTCTCCCAGAAGAGAAAAT-TTCTCTTCTGGGATAGTCTCGTT
gi|94894 : TCTTTTCTGCGGATA---TTTTACAAGAGAAATTTTCTCTTCTAG-AA-AAA-G-T-G-TTCAAATACACGCGTTTGAAAGAGTAGGTATTTCAAAACTGTCAAGTG--GAA--AA-GAT---ACTTC-TCTTCTGAC----AGTATTGTCT----GT-AAAAGCGAAACCATTCCAGAAGAGAAAAT-TTCTCTTCTGTGATTATCTCGTT
gi|94895 : TCTTTTCTGCCGATTATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-AT--T-TAG-TTCAAATTCACGCGTTTGAACGAATGAATCTTTCAAAATTGTCAAGTA--GAG--AA-GAA---ACGTC-TTTT----C----AGTATAAAAT----GT-AAAAGCAAGGCTCTCCCAGAAGAGAAAA-------TTCTGGGATAGTCTCGTT
gi|94896 : TCTTTTCTGCGGATA---TTTTACAAGAGAAATTTTCTCTTCTAG-AA-AAAAG-T-G-TTCAAATGCACGCGTTTGAAAGAATAGTTATTTCAAAACTGTCAAGTA--GAA--AA-GAA---ACTTC-TCTT----CTGAGAGTATTGTCT----GC-ATAAGCGAAACCATTCCAGAAGAGAAAAT-TTCTCTTCTGTGATCATCTCGTT
gi|94897 : TTTTTTCTGTCGATAATATTTTACAAGGGAAATTTTCTCTTCTAG-AA-AT--T-T-GGTTCAAGTTCACGCGTTTGAAAGAATGACTCTTTCAAAACTGTCAAGTA--GAA--AA-GAA---ACGTC-TCTT----C----AGTATAATAT----GT-AAAAGCAA
gi|94898 : TCTTTTTCGCAGATATTATTTTACAAGAGAAATGTTCTCTTCTAGAAA-AA--G-T-G-TTCAAATGCACGCATTTGAAAGAATAGGTATTTC--AGCTGTCAAGTG--GAA--AA-GAAACTACTTT-TCTTCTGAC----AGTATTGTCT----GT-AAAAGCGAAACCCTTCCAGAAGAGAAAAT-
gi|94899 : AATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-ATT-G-T-A-TCCAAATGCACGCGTTTGAAAGAATGAATCTTTCAAAACAGTCAAGTA--GAA--AGCGAA---ACGTC-TCTT----T----AGTATAATAT----GT-AAAAGTGAAATCCTCCCAGAAGAGAAAAT-TTCTCTTCTAAGATTGTATCGTT
gi|94900 : ttttttatgaTCTTTTCTGCCGATAATATTTTACGAGAGAAATTTTCTCTTCTAG-AA-AAA-G-T-G-TTCAAATGCGCGCGTTTGAAAGAATGGATAATTCAAATCTGTCAAGCA--GAA--AA-GAA---ACTTC-TCTT----C----AGTATTGTCT----GT-AAAAGCGAGACCCTCCTAGAAGAGAAAAT-TTCTCTTCTGGGATTGTCTCGTT
gi|94901 : TCTGTTCTGCAGATAATATTTTACAAGAGATATTTTCGCTTCCAG-AA-AA--GGT-G-TTCATGTGCACGCGTTTGAAAGAATGGCTATTTCAAAACTGTCAAATG--GAA--AA-GAA---ACTTC-TCTTCTGAC----AGTATTGTCT----GT-AAAAGCGAAACCCTTCCAGAATAGAAAAA-ATCTCTTCTGTGATTGTCTCGTT
gi|94902 : tttTCTTTTCTGCCGATAATATTTTAAAAGAGAAATTTTCTTTTCTAG-AATAA--G-G-G-TTCAAATGCATGCATTTGAAAGAATGGATAATTCAAATCTGTCAAGCA--GAA--AA-GAA---AGTTC-TCTT----C----AGTATTGTCT----GT-AAAAGTGAGGCACTATCACAAGAGAAAAT-TTCTCTTCCGGGATTGTCTCGTTgtta
gi|94903 : TTTTTGTCGATAATATTTTAGAACAGAAAATTTCTTTTCTAG-AA-AAA-G-T-G-TTCAAATGCAGACGTTTGAAAGAATGGATATTTCAAATCTGTCAAGCA--GAA--AA-GAA---ACTTC-TCTT----C----AGTGTTGTCT----GT-AAAATCGAGATCCTTCCAGAAGAGAAAAT-ATCTCTTCTGGGAGTGTCCC
gi|94904 : ttgTCTTTTCTGCAGATATTATTTTACAAGAGAAATTTTCTCTTCTAG-AA-AA--GGT-A-TGCAAATGCACGTGTTTGAAAGAATAGATATTTCAAAACTGCCAAGTG--AAA--AA-GAA---ACTTC-TCTTCTGAC----AGTATTGTCT----GT-AAAAGCGAAACCATTCCGGAAAAGAAAAT-TTCTCTTCTGAGATTGGCTCGTT
gi|94905 : TTTTTTTTGTCGATAATATTTTAAAAGTGAAGTTTTCTTTTCTAG-AA-AAA-G-T-G-TTCAAATGAACGCGTTTGAAAGAATGGATATTTTAAGTCTGTCAAACA--GAG--AA-GAA---ATTTC-TCTT----T----AGTATTGTCT----GT-AAAAACGATATCCTCCCAGAAGAGAAAAT-TTCTCTTCCAGGATTGTCTCGTT
gi|94906 : TCTTTTC-----A-AATAATTTTCAAGAGAAGTTTTCTCTTCAAG-AA-AAT-G-T-G-TTTAAATGCACGCGATTGAAAGAATGGTTAATTCAAATATGTCAAGCA--GAA--AA-GAA---ACTTC-TCTT----C----AGTATTGTCT----GT-AAAAGCGAGGCCCTTCCAGAAGAGAACAT-TTTTCTTCTGGTATTGTCTCGTT
gi|94907 : ttTTTTTTATCGATAATATTTTAAAAGAGAAATTTTCTCTTCTAG-AA-AAA-G-T-G-TTCAAATGCAGACGTTTGAATGAATGGATATTTCAAATCTGTTAAGCACAGAA--AA-GAA---ACTTC-TCTT----C----AGTATTGTCT----GT-AAAAGCGAGATCCTTCCAGAAGAGAAAAT-TTCTCTTCTAGGAGTGTCTCGTT
gi|94908 : tTTTTCTACTGATAATATTGTACAAGAGAAATTTTCTCTTCTAG-AA-AT--G-C-GATTCAAATTCACCCATTGGAAAAAATGAATCTTTCAAAACTGTCAAGTA--GAA--AA-GAA---ACGTC-TATT----C----AGTATGATAT----GT-AAAAGCAGGGCTTTCCCAGATAAGAAACT-TTCTCTTCTGGGATAGTCTCGTT
gi|94909 : TCTTTTCTGCCGATTATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-AT--T-TAG-TTCAAA
gi|94909 : T-AAAAGCGAAACCATTCCAGAAGAGAAAAT-TTCTCTTCTGTGATTATCTCGTTaatatctcttacgttgctagcgagaaatttctccatgtcttatcttaacgaagcatttctcttgttctgcatatttctccgattacaacgagataatcacagaagagaaattttctcttctggaatggtttcgctttta
gi|94910 : tttgaactaaatttctagaagagaaaatttctcttgtaaaatataatcggcagaaaagaaatatctcttacgttgctagcgagaaatttctccatgtcttatcttaacgaagcatttctcttgttctgcatatttctccgattacAATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-ATT-G-T-G-TCCAAGTTCACGCGTTTGAAAGAATGAATCTTTCAAAACAGTCAAGTT--GAA--AA-GAA---ACGCCTTCTT----C----GGTATAATAA----GT-AAACGTG-GGCTCTCCCAGAAGAGAAAAA-TTCTCTTCTTGGATTGTCTCGTT
gi|94911 : aaAATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-CT--T-T-GGTTCAAATGCACGCGTTTGAAAGAATGAATCTTTCAAAACTGTCAAGTA--GAA--AA-GAA---ACTTC-TCTT----C----AGAAAAATAT----TT-AAAAGCAGGGTTGTCCGAAAAGAGAAAAT-TTCTCTTCTGGGATTGTCTC
gi|94912 : AATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-AT--T-T-GGTTCAAATGCACGCGTTTGAAAGAATGAATCTTTCAAAACTGTCAAGTA--GAA--AA-GAA---ATTTC-TCTT----C----AGAACAATAT----TT-AAAAGCAGGGTTGTCCCAGAAGAGAAAAT-TTCTCTTCTGGGATTGTCTCGTT
gi|94913 : AATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-AT--T-T-GGTTCATATGCATGCGTTTTGAAGAATGAATCTTTCAAAACTGTCAAGTA--GAG--AA-GAA---ACTTC-TCTT----C----AGAATAAAAT----GT-AAAAGCAGGGCTGTCCCAGAAGAGAAATT-TTCTCTTCTGGGATTGTCTCGTT
gi|94914 : AATATTTCACAAGAGAAATTTTCTGTTATGG-AA-AT--T-T-GGTTCAAATGCACGCGTTTGAAAGGATGAATCTTTCAAAACTGTCAAATA--GAAAGAA-GAA---ATTTC-TCTT----C----AG---------------AATAACAAAGCCCTCCCAGAAGAGAACAT-TTCACTTCTAGGATAGTCTCGTT
gi|94915 : AATAATTTACAAGAGAAATTTTCTCTTCTAG-AA-ATT-G-T-G-TCCAATTGCACGCGTTTGAAAGAATGAATCTTTCAAAACAGTCAAGTA--GAA--AG-GAA---ACGTC-TCTG----T----AGTATAATAT----GT-AAAAGTGATATCCTTCCAGAAGAGACAAT-TTCTCTTCTAGGATTGTCTC
gi|94916 : AATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-ATT-A-T-G-TCCAAATG------------------AATTTTTCAAAACAGTCAAGTA--GAA--AA-AAA---AGT-A-TATT----T----AGTATAATAT----GT-AAAAGCGAGATCCTCCCAGAGGAGAAAAT-TTCCCTTCTAGGATTGTCTC
gi|94917 : ATATTTTACAAGAGAAATGTTCTGTTCTAG-AA-AT--T-TGG-TTAAAATTCACGCGTTTGAAAG-ATAAAACTGTCATAAATGTCAAGTA--GAA--AA-GAA---ACGTC-TCTT----C----AATATAATAT----GTAAAAAGCAAAACCCTCCCA-AAGAGAAAAT-TTCTCTTCTAGGATAGTCTCGTT
gi|94918 : TTC-TCTTGTT-C----TGCATAGTTTTCCGAT-TACAACGAGACAATACCAGAAGA-AAAATGTTCTCTTCTGGAAGGGCCTCGCT
gi|94918 : tacgagataT-AAAAGCGAGGCCCTTCCAGAAGAGAACAT-TTTTCTTCTGGTATTGTCTCGTTttta
gi|94919 : tacgagatattctcttgttctgcatagttttccgattacAAGCGAAACCATTCCAGAAGAGAAAAT-TTCTCTTCTGTGATCATCTCGTT
gi|94920 : ttctcttgttcagcatacttctccgattacT-AAAAACGATATCCTCCCAGAAGAGAAAAT-TTCTCTTCCAGGATTGTCTCGTT
gi|94921 : ttctcttgtcctgcatacttctcatattacT-AAAAGCAGGGCTGTCCCAGAAGAGAAATT-TTCTCTTCTGGGATTGTCTCGTT
gi|94922 : tattacT-AAAAGCGAAACCCTTCCAGAATAGAAAAA-ATCTCTTCTGTGATTGTCTCGTT
gi|94923 : ataacT-AAAAGCAAGGCTCTCCCAGAAGAGAAAAT-TTCTCTTCTGGGATAGTCTCGTT
gi|94924 : T-AAAAGCAGGGTTGTCCGAAAAGAGAAAAT-TTCTCTTCTGGGATTGTCTCATT
gi|94925 : T-AAAAGCAGGGTTGTCCCAGAAGAGAAAAT-TTCTCTTCTGGGATTGTCTCGTT
gi|94926 : T-AAAAGCAAGGCTCTCCCAGAAGAGAAAA-------TTCTGGGATAGTCTCGTT
gi|94927 : T-AAAAGCGAGACCCTCCTAGAAGAGAAAAT-TTCTCTTCTGGGATTGTCTCGTT
gi|94928 : T-AAAAGCGAGATCCTTCCAGAAGAGAAAAT-TTCTCTTCTAGGAGTGTCTCGTT
gi|94929 : T-AAAAGTGAAATCCTCCCAGAAGAGAAAAT-TTCTCTTCTAAGATTGTATCGTT
gi|94930 : T-AAAAGCAGGGCTTTCCCAGATAAGAAACT-TTCTCTTCTGGGATAGTCTCGTT
gi|94931 : T-AAACGTGGG-CTCTCCCAGAAGAGAAAAA-TTCTCTTCTTGGATTGTCTCGTT
gi|94932 : T-AAAAGTGAGGCACTATCACAAGAGAAAAT-TTCTCTTCCGGGATTGTCTCGTT
gi|94933 : T-AAAAGTGATATCCTTCCAGAAGAGACAAT-TTCTCTTCTAGGATTGTCTCATT
gi|94934 : T-AAAATCGAGATCCTTCCAGAAGAGAAAAT-ATCTCTTCTGGGAGTGTCCCATT
gi|94935 : -AAAAGCAAAACCCTCCCA-AAGAGAAAAT-TTCTCTTCTAGGATAGTCTCGTT
gi|94936 : T-AAAAGCGAAACCATTCCGGAAAAGAAAAT-TTCTCTTCTGAGATTGGCTCGTT
gi|94937 : T-AAAAGCGAGATCCTCCCAGAGGAGAAAAT-TTCCCTTCTAGGATTGTCTCTTT
Alignments
lowQualScore : 22222 1111
lowQualScore : 0 1 1 22222 6 9 1 22 22 1 222 1 6666 3333 1 1 3333 0 0
lowQualScore : . . . ..... . . . .. .. . ... . .... .... . . .... . .
lowQualScore : 4 6 6 00000 4 6 0 33 33 7 999 6 4444 4444 6 6 4444 9 9
consensus : TCTTTTCTGCCGATAATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-AN--G-T-G-TTCAAATGCACGCGTTTGAAAGAATGGATNTTTCAAAACTGTCAAGTA--GAA--AA-GAA---ACTTC-TCTT----C----AGTATNGTNT----GT-AAAAGCGAGACCCTCCCAGAAGAGAAAAT-TTCTCTTCTGGGATTGTCTCGTT
Reference ( family-496 ) : TCTTTTCTGCCGATAATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-AN--G-T-G-TTCAAATGCACGCGTTTGAAAGAATGGATNTTTCAAAACTGTCAAGTA--GAA--AA-GAA---ACTTC-TCTT----C----AGTATNGTNT----GT-AAAAGCGAGACCCTCCCAGAAGAGAAAAT-TTCTCTTCTGGGATTGTCTCGTT
gi|94893 : TCTTTTCTGCCGATTATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-AT--T-TAG-TTCAAATATACGCGTTTGAAAGAATGAATCTTTCAAAACTGTCAAGTG--GAA--AA-GAA---ACGTC-TCTT----C----AGTATAAAAT----GT-AAAAGCAAGGCTCTCCCAGAAGAGAAAAT-TTCTCTTCTGGGATAGTCTCGTT
gi|94894 : TCTTTTCTGCGGATA---TTTTACAAGAGAAATTTTCTCTTCTAG-AA-AAA-G-T-G-TTCAAATACACGCGTTTGAAAGAGTAGGTATTTCAAAACTGTCAAGTG--GAA--AA-GAT---ACTTC-TCTTCTGAC----AGTATTGTCT----GT-AAAAGCGAAACCATTCCAGAAGAGAAAAT-TTCTCTTCTGTGATTATCTCGTT
gi|94895 : TCTTTTCTGCCGATTATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-AT--T-TAG-TTCAAATTCACGCGTTTGAACGAATGAATCTTTCAAAATTGTCAAGTA--GAG--AA-GAA---ACGTC-TTTT----C----AGTATAAAAT----GT-AAAAGCAAGGCTCTCCCAGAAGAGAAAA-------TTCTGGGATAGTCTCGTT
gi|94896 : TCTTTTCTGCGGATA---TTTTACAAGAGAAATTTTCTCTTCTAG-AA-AAAAG-T-G-TTCAAATGCACGCGTTTGAAAGAATAGTTATTTCAAAACTGTCAAGTA--GAA--AA-GAA---ACTTC-TCTT----CTGAGAGTATTGTCT----GC-ATAAGCGAAACCATTCCAGAAGAGAAAAT-TTCTCTTCTGTGATCATCTCGTT
gi|94897 : TTTTTTCTGTCGATAATATTTTACAAGGGAAATTTTCTCTTCTAG-AA-AT--T-T-GGTTCAAGTTCACGCGTTTGAAAGAATGACTCTTTCAAAACTGTCAAGTA--GAA--AA-GAA---ACGTC-TCTT----C----AGTATAATAT----GT-AAAAGCAA
gi|94898 : TCTTTTTCGCAGATATTATTTTACAAGAGAAATGTTCTCTTCTAGAAA-AA--G-T-G-TTCAAATGCACGCATTTGAAAGAATAGGTATTTC--AGCTGTCAAGTG--GAA--AA-GAAACTACTTT-TCTTCTGAC----AGTATTGTCT----GT-AAAAGCGAAACCCTTCCAGAAGAGAAAAT-
gi|94899 : AATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-ATT-G-T-A-TCCAAATGCACGCGTTTGAAAGAATGAATCTTTCAAAACAGTCAAGTA--GAA--AGCGAA---ACGTC-TCTT----T----AGTATAATAT----GT-AAAAGTGAAATCCTCCCAGAAGAGAAAAT-TTCTCTTCTAAGATTGTATCGTT
gi|94900 : ttttttatgaTCTTTTCTGCCGATAATATTTTACGAGAGAAATTTTCTCTTCTAG-AA-AAA-G-T-G-TTCAAATGCGCGCGTTTGAAAGAATGGATAATTCAAATCTGTCAAGCA--GAA--AA-GAA---ACTTC-TCTT----C----AGTATTGTCT----GT-AAAAGCGAGACCCTCCTAGAAGAGAAAAT-TTCTCTTCTGGGATTGTCTCGTT
gi|94901 : TCTGTTCTGCAGATAATATTTTACAAGAGATATTTTCGCTTCCAG-AA-AA--GGT-G-TTCATGTGCACGCGTTTGAAAGAATGGCTATTTCAAAACTGTCAAATG--GAA--AA-GAA---ACTTC-TCTTCTGAC----AGTATTGTCT----GT-AAAAGCGAAACCCTTCCAGAATAGAAAAA-ATCTCTTCTGTGATTGTCTCGTT
gi|94902 : tttTCTTTTCTGCCGATAATATTTTAAAAGAGAAATTTTCTTTTCTAG-AATAA--G-G-G-TTCAAATGCATGCATTTGAAAGAATGGATAATTCAAATCTGTCAAGCA--GAA--AA-GAA---AGTTC-TCTT----C----AGTATTGTCT----GT-AAAAGTGAGGCACTATCACAAGAGAAAAT-TTCTCTTCCGGGATTGTCTCGTTgtta
gi|94903 : TTTTTGTCGATAATATTTTAGAACAGAAAATTTCTTTTCTAG-AA-AAA-G-T-G-TTCAAATGCAGACGTTTGAAAGAATGGATATTTCAAATCTGTCAAGCA--GAA--AA-GAA---ACTTC-TCTT----C----AGTGTTGTCT----GT-AAAATCGAGATCCTTCCAGAAGAGAAAAT-ATCTCTTCTGGGAGTGTCCC
gi|94904 : ttgTCTTTTCTGCAGATATTATTTTACAAGAGAAATTTTCTCTTCTAG-AA-AA--GGT-A-TGCAAATGCACGTGTTTGAAAGAATAGATATTTCAAAACTGCCAAGTG--AAA--AA-GAA---ACTTC-TCTTCTGAC----AGTATTGTCT----GT-AAAAGCGAAACCATTCCGGAAAAGAAAAT-TTCTCTTCTGAGATTGGCTCGTT
gi|94905 : TTTTTTTTGTCGATAATATTTTAAAAGTGAAGTTTTCTTTTCTAG-AA-AAA-G-T-G-TTCAAATGAACGCGTTTGAAAGAATGGATATTTTAAGTCTGTCAAACA--GAG--AA-GAA---ATTTC-TCTT----T----AGTATTGTCT----GT-AAAAACGATATCCTCCCAGAAGAGAAAAT-TTCTCTTCCAGGATTGTCTCGTT
gi|94906 : TCTTTTC-----A-AATAATTTTCAAGAGAAGTTTTCTCTTCAAG-AA-AAT-G-T-G-TTTAAATGCACGCGATTGAAAGAATGGTTAATTCAAATATGTCAAGCA--GAA--AA-GAA---ACTTC-TCTT----C----AGTATTGTCT----GT-AAAAGCGAGGCCCTTCCAGAAGAGAACAT-TTTTCTTCTGGTATTGTCTCGTT
gi|94907 : ttTTTTTTATCGATAATATTTTAAAAGAGAAATTTTCTCTTCTAG-AA-AAA-G-T-G-TTCAAATGCAGACGTTTGAATGAATGGATATTTCAAATCTGTTAAGCACAGAA--AA-GAA---ACTTC-TCTT----C----AGTATTGTCT----GT-AAAAGCGAGATCCTTCCAGAAGAGAAAAT-TTCTCTTCTAGGAGTGTCTCGTT
gi|94908 : tTTTTCTACTGATAATATTGTACAAGAGAAATTTTCTCTTCTAG-AA-AT--G-C-GATTCAAATTCACCCATTGGAAAAAATGAATCTTTCAAAACTGTCAAGTA--GAA--AA-GAA---ACGTC-TATT----C----AGTATGATAT----GT-AAAAGCAGGGCTTTCCCAGATAAGAAACT-TTCTCTTCTGGGATAGTCTCGTT
gi|94909 : TCTTTTCTGCCGATTATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-AT--T-TAG-TTCAAA
gi|94909 : T-AAAAGCGAAACCATTCCAGAAGAGAAAAT-TTCTCTTCTGTGATTATCTCGTTaatatctcttacgttgctagcgagaaatttctccatgtcttatcttaacgaagcatttctcttgttctgcatatttctccgattacaacgagataatcacagaagagaaattttctcttctggaatggtttcgctttta
gi|94910 : tttgaactaaatttctagaagagaaaatttctcttgtaaaatataatcggcagaaaagaaatatctcttacgttgctagcgagaaatttctccatgtcttatcttaacgaagcatttctcttgttctgcatatttctccgattacAATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-ATT-G-T-G-TCCAAGTTCACGCGTTTGAAAGAATGAATCTTTCAAAACAGTCAAGTT--GAA--AA-GAA---ACGCCTTCTT----C----GGTATAATAA----GT-AAACGTG-GGCTCTCCCAGAAGAGAAAAA-TTCTCTTCTTGGATTGTCTCGTT
gi|94911 : aaAATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-CT--T-T-GGTTCAAATGCACGCGTTTGAAAGAATGAATCTTTCAAAACTGTCAAGTA--GAA--AA-GAA---ACTTC-TCTT----C----AGAAAAATAT----TT-AAAAGCAGGGTTGTCCGAAAAGAGAAAAT-TTCTCTTCTGGGATTGTCTC
gi|94912 : AATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-AT--T-T-GGTTCAAATGCACGCGTTTGAAAGAATGAATCTTTCAAAACTGTCAAGTA--GAA--AA-GAA---ATTTC-TCTT----C----AGAACAATAT----TT-AAAAGCAGGGTTGTCCCAGAAGAGAAAAT-TTCTCTTCTGGGATTGTCTCGTT
gi|94913 : AATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-AT--T-T-GGTTCATATGCATGCGTTTTGAAGAATGAATCTTTCAAAACTGTCAAGTA--GAG--AA-GAA---ACTTC-TCTT----C----AGAATAAAAT----GT-AAAAGCAGGGCTGTCCCAGAAGAGAAATT-TTCTCTTCTGGGATTGTCTCGTT
gi|94914 : AATATTTCACAAGAGAAATTTTCTGTTATGG-AA-AT--T-T-GGTTCAAATGCACGCGTTTGAAAGGATGAATCTTTCAAAACTGTCAAATA--GAAAGAA-GAA---ATTTC-TCTT----C----AG---------------AATAACAAAGCCCTCCCAGAAGAGAACAT-TTCACTTCTAGGATAGTCTCGTT
gi|94915 : AATAATTTACAAGAGAAATTTTCTCTTCTAG-AA-ATT-G-T-G-TCCAATTGCACGCGTTTGAAAGAATGAATCTTTCAAAACAGTCAAGTA--GAA--AG-GAA---ACGTC-TCTG----T----AGTATAATAT----GT-AAAAGTGATATCCTTCCAGAAGAGACAAT-TTCTCTTCTAGGATTGTCTC
gi|94916 : AATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-ATT-A-T-G-TCCAAATG------------------AATTTTTCAAAACAGTCAAGTA--GAA--AA-AAA---AGT-A-TATT----T----AGTATAATAT----GT-AAAAGCGAGATCCTCCCAGAGGAGAAAAT-TTCCCTTCTAGGATTGTCTC
gi|94917 : ATATTTTACAAGAGAAATGTTCTGTTCTAG-AA-AT--T-TGG-TTAAAATTCACGCGTTTGAAAG-ATAAAACTGTCATAAATGTCAAGTA--GAA--AA-GAA---ACGTC-TCTT----C----AATATAATAT----GTAAAAAGCAAAACCCTCCCA-AAGAGAAAAT-TTCTCTTCTAGGATAGTCTCGTT
gi|94918 : TTC-TCTTGTT-C----TGCATAGTTTTCCGAT-TACAACGAGACAATACCAGAAGA-AAAATGTTCTCTTCTGGAAGGGCCTCGCT
gi|94918 : tacgagataT-AAAAGCGAGGCCCTTCCAGAAGAGAACAT-TTTTCTTCTGGTATTGTCTCGTTttta
gi|94919 : tacgagatattctcttgttctgcatagttttccgattacAAGCGAAACCATTCCAGAAGAGAAAAT-TTCTCTTCTGTGATCATCTCGTT
gi|94920 : ttctcttgttcagcatacttctccgattacT-AAAAACGATATCCTCCCAGAAGAGAAAAT-TTCTCTTCCAGGATTGTCTCGTT
gi|94921 : ttctcttgtcctgcatacttctcatattacT-AAAAGCAGGGCTGTCCCAGAAGAGAAATT-TTCTCTTCTGGGATTGTCTCGTT
gi|94922 : tattacT-AAAAGCGAAACCCTTCCAGAATAGAAAAA-ATCTCTTCTGTGATTGTCTCGTT
gi|94923 : ataacT-AAAAGCAAGGCTCTCCCAGAAGAGAAAAT-TTCTCTTCTGGGATAGTCTCGTT
gi|94924 : T-AAAAGCAGGGTTGTCCGAAAAGAGAAAAT-TTCTCTTCTGGGATTGTCTCATT
gi|94925 : T-AAAAGCAGGGTTGTCCCAGAAGAGAAAAT-TTCTCTTCTGGGATTGTCTCGTT
gi|94926 : T-AAAAGCAAGGCTCTCCCAGAAGAGAAAA-------TTCTGGGATAGTCTCGTT
gi|94927 : T-AAAAGCGAGACCCTCCTAGAAGAGAAAAT-TTCTCTTCTGGGATTGTCTCGTT
gi|94928 : T-AAAAGCGAGATCCTTCCAGAAGAGAAAAT-TTCTCTTCTAGGAGTGTCTCGTT
gi|94929 : T-AAAAGTGAAATCCTCCCAGAAGAGAAAAT-TTCTCTTCTAAGATTGTATCGTT
gi|94930 : T-AAAAGCAGGGCTTTCCCAGATAAGAAACT-TTCTCTTCTGGGATAGTCTCGTT
gi|94931 : T-AAACGTGGG-CTCTCCCAGAAGAGAAAAA-TTCTCTTCTTGGATTGTCTCGTT
gi|94932 : T-AAAAGTGAGGCACTATCACAAGAGAAAAT-TTCTCTTCCGGGATTGTCTCGTT
gi|94933 : T-AAAAGTGATATCCTTCCAGAAGAGACAAT-TTCTCTTCTAGGATTGTCTCATT
gi|94934 : T-AAAATCGAGATCCTTCCAGAAGAGAAAAT-ATCTCTTCTGGGAGTGTCCCATT
gi|94935 : -AAAAGCAAAACCCTCCCA-AAGAGAAAAT-TTCTCTTCTAGGATAGTCTCGTT
gi|94936 : T-AAAAGCGAAACCATTCCGGAAAAGAAAAT-TTCTCTTCTGAGATTGGCTCGTT
gi|94937 : T-AAAAGCGAGATCCTCCCAGAGGAGAAAAT-TTCCCTTCTAGGATTGTCTCTTT
blockSeqs : A T AAAG A G A CA AG C ACT T CTGA TGAG T C TCCG
blockSeqs : . . AAG A A C . . . . . CTGA . A A .
blockSeqs : . . TTG G G A . . . . . CTGA . T C .
blockSeqs : . . AAG . G C . . . . . CTGA . A A .
blockSeqs : . . AGG . G A . . . . . GTT . T C .
blockSeqs : . . AAG . G C . . . . . . . A A .
blockSeqs : . . AGG . . A . . . . . . . T C .
blockSeqs : . . AAG . . A . . . . . . . T C .
blockSeqs : . . ATG . . A . . . . . . . T C .
blockSeqs : . . AAG . . A . . . . . . . T C .
blockSeqs : . . TTG . . A . . . . . . . T C .
blockSeqs : . . TTG . . A . . . . . . . T C .
blockSeqs : . . TTA . . A . . . . . . . T C .
blockSeqs : . . TT . . A . . . . . . . T C .
blockSeqs : . . TT . . C . . . . . . . G A .
blockSeqs : . . AG . . C . . . . . . . A A .
blockSeqs : . . AG . . C . . . . . . . A A .
blockSeqs : . . TG . . C . . . . . . . A A .
blockSeqs : . . TT . . C . . . . . . . A A .
blockSeqs : . . TT . . C . . . . . . . A A .
blockSeqs : . . TT . . C . . . . . . . A A .
blockSeqs : . . TT . . T . . . . . . . A A .
blockSeqs : . . TT . . C . . . . . . . A T .
blockSeqs : . . TT . . . . . . . .
blockSeqCons : NTG**
originalCons : TCTTTTCTGCCGATAATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-AN--G-T-G-TTCAAATGCACGCGTTTGAAAGAATGGATNTTTCAAAACTGTCAAGTA--GAA--AA-GAA---ACTTC-TCTT----C----AGTATNGTNT----GT-AAAAGCGAGACCCTCCCAGAAGAGAAAAT-TTCTCTTCTGGGATTGTCTCGTT
finalCons : TCTTTTCTGCCGATAATATTTTACAAGAGAAATTTTCTCTTCTAG-AA-ANTG--T-G-TTCAAATGCACGCGTTTGAAAGAATGGATNTTTCAAAACTGTCAAGTA--GAA--AA-GAA---ACTTC-TCTT----C----AGTATNGTNT----GT-AAAAGCGAGACCCTCCCAGAAGAGAAAAT-TTCTCTTCTGGGATTGTCTCGTT
Alignments
lowQualScore : 1111
lowQualScore : 0 66666 1 1 22 22 1 222 1 6666 3333 1 1 3333 0 0
lowQualScore : . ..... . . .. .. . ... . .... .... . . .... . .
lowQualScore : 4 55555 6 0 33 33 7 999 6 4444 4444 6 6 4444 9 9
consensus : TCTTTTCTGCCGATAATATTTTACAAGAGAAATTTTCTCTTCTAGAAANT-GTG-TTCAAATGCACGCGTTTGAAAGAATGGATNTTTCAAAACTGTCAAG--TAGAA--AA-GAA---ACTTC-TCTT----C----AGTATNGTNT----GT-AAAAGCGAGACCCTCCCAGAAGAGAAAAT-TTCTCTTCTGGGATTGTCTCGTT
Reference ( family-496 ) : TCTTTTCTGCCGATAATATTTTACAAGAGAAATTTTCTCTTCTAGAAANT-GTG-TTCAAATGCACGCGTTTGAAAGAATGGATNTTTCAAAACTGTCAAG--TAGAA--AA-GAA---ACTTC-TCTT----C----AGTATNGTNT----GT-AAAAGCGAGACCCTCCCAGAAGAGAAAAT-TTCTCTTCTGGGATTGTCTCGTT
gi|94893 : TCTTTTCTGCCGATTATATTTTACAAGAGAAATTTTCTCTTCTAGAAATT-TAG-TTCAAATATACGCGTTTGAAAGAATGAATCTTTCAAAACTGTCAAG--TGGAA--AA-GAA---ACGTC-TCTT----C----AGTATAAAAT----GT-AAAAGCAAGGCTCTCCCAGAAGAGAAAAT-TTCTCTTCTGGGATAGTCTCGTT
gi|94894 : TCTTTTCTGCGGATA---TTTTACAAGAGAAATTTTCTCTTCTAGAAAAA-GTG-TTCAAATACACGCGTTTGAAAGAGTAGGTATTTCAAAACTGTCAAG--TGGAA--AA-GAT---ACTTC-TCTTCTGAC----AGTATTGTCT----GT-AAAAGCGAAACCATTCCAGAAGAGAAAAT-TTCTCTTCTGTGATTATCTCGTT
gi|94895 : TCTTTTCTGCCGATTATATTTTACAAGAGAAATTTTCTCTTCTAGAAATT-TAG-TTCAAATTCACGCGTTTGAACGAATGAATCTTTCAAAATTGTCAAG--TAGAG--AA-GAA---ACGTC-TTTT----C----AGTATAAAAT----GT-AAAAGCAAGGCTCTCCCAGAAGAGAAAA-------TTCTGGGATAGTCTCGTT
gi|94896 : TCTTTTCTGCGGATA---TTTTACAAGAGAAATTTTCTCTTCTAGAAAAAAGTG-TTCAAATGCACGCGTTTGAAAGAATAGTTATTTCAAAACTGTCAAG--TAGAA--AA-GAA---ACTTC-TCTT----CTGAGAGTATTGTCT----GC-ATAAGCGAAACCATTCCAGAAGAGAAAAT-TTCTCTTCTGTGATCATCTCGTT
gi|94897 : TTTTTTCTGTCGATAATATTTTACAAGGGAAATTTTCTCTTCTAGAAATT-TGG-TTCAAGTTCACGCGTTTGAAAGAATGACTCTTTCAAAACTGTCAAG--TAGAA--AA-GAA---ACGTC-TCTT----C----AGTATAATAT----GT-AAAAGCAA
gi|94898 : TCTTTTTCGCAGATATTATTTTACAAGAGAAATGTTCTCTTCTAGAAAAA-GTG-TTCAAATGCACGCATTTGAAAGAATAGGTATTTC--AGCTGTCAAG--TGGAA--AA-GAAACTACTTT-TCTTCTGAC----AGTATTGTCT----GT-AAAAGCGAAACCCTTCCAGAAGAGAAAAT-
gi|94899 : AATATTTTACAAGAGAAATTTTCTCTTCTAGAAATT-GTA-TCCAAATGCACGCGTTTGAAAGAATGAATCTTTCAAAACAGTCAAG--TAGAA--AGCGAA---ACGTC-TCTT----T----AGTATAATAT----GT-AAAAGTGAAATCCTCCCAGAAGAGAAAAT-TTCTCTTCTAAGATTGTATCGTT
gi|94900 : ttttttatgaTCTTTTCTGCCGATAATATTTTACGAGAGAAATTTTCTCTTCTAGAAAAA-GTG-TTCAAATGCGCGCGTTTGAAAGAATGGATAATTCAAATCTGTCAAG--CAGAA--AA-GAA---ACTTC-TCTT----C----AGTATTGTCT----GT-AAAAGCGAGACCCTCCTAGAAGAGAAAAT-TTCTCTTCTGGGATTGTCTCGTT
gi|94901 : TCTGTTCTGCAGATAATATTTTACAAGAGATATTTTCGCTTCCAGAAAAG-GTG-TTCATGTGCACGCGTTTGAAAGAATGGCTATTTCAAAACTGTCAAA--TGGAA--AA-GAA---ACTTC-TCTTCTGAC----AGTATTGTCT----GT-AAAAGCGAAACCCTTCCAGAATAGAAAAA-ATCTCTTCTGTGATTGTCTCGTT
gi|94902 : tttTCTTTTCTGCCGATAATATTTTAAAAGAGAAATTTTCTTTTCTAGAATAA-GGG-TTCAAATGCATGCATTTGAAAGAATGGATAATTCAAATCTGTCAAG--CAGAA--AA-GAA---AGTTC-TCTT----C----AGTATTGTCT----GT-AAAAGTGAGGCACTATCACAAGAGAAAAT-TTCTCTTCCGGGATTGTCTCGTTgtta
gi|94903 : TTTTTGTCGATAATATTTTAGAACAGAAAATTTCTTTTCTAGAAAAA-GTG-TTCAAATGCAGACGTTTGAAAGAATGGATATTTCAAATCTGTCAAG--CAGAA--AA-GAA---ACTTC-TCTT----C----AGTGTTGTCT----GT-AAAATCGAGATCCTTCCAGAAGAGAAAAT-ATCTCTTCTGGGAGTGTCCC
gi|94904 : ttgTCTTTTCTGCAGATATTATTTTACAAGAGAAATTTTCTCTTCTAGAAAAG-GTA-TGCAAATGCACGTGTTTGAAAGAATAGATATTTCAAAACTGCCAAG--TGAAA--AA-GAA---ACTTC-TCTTCTGAC----AGTATTGTCT----GT-AAAAGCGAAACCATTCCGGAAAAGAAAAT-TTCTCTTCTGAGATTGGCTCGTT
gi|94905 : TTTTTTTTGTCGATAATATTTTAAAAGTGAAGTTTTCTTTTCTAGAAAAA-GTG-TTCAAATGAACGCGTTTGAAAGAATGGATATTTTAAGTCTGTCAAA--CAGAG--AA-GAA---ATTTC-TCTT----T----AGTATTGTCT----GT-AAAAACGATATCCTCCCAGAAGAGAAAAT-TTCTCTTCCAGGATTGTCTCGTT
gi|94906 : TCTTTTC-----A-AATAATTTTCAAGAGAAGTTTTCTCTTCAAGAAAAT-GTG-TTTAAATGCACGCGATTGAAAGAATGGTTAATTCAAATATGTCAAG--CAGAA--AA-GAA---ACTTC-TCTT----C----AGTATTGTCT----GT-AAAAGCGAGGCCCTTCCAGAAGAGAACAT-TTTTCTTCTGGTATTGTCTCGTT
gi|94907 : ttTTTTTTATCGATAATATTTTAAAAGAGAAATTTTCTCTTCTAGAAAAA-GTG-TTCAAATGCAGACGTTTGAATGAATGGATATTTCAAATCTGTTAAGCACAGAA--AA-GAA---ACTTC-TCTT----C----AGTATTGTCT----GT-AAAAGCGAGATCCTTCCAGAAGAGAAAAT-TTCTCTTCTAGGAGTGTCTCGTT
gi|94908 : tTTTTCTACTGATAATATTGTACAAGAGAAATTTTCTCTTCTAGAAA-T-GCGATTCAAATTCACCCATTGGAAAAAATGAATCTTTCAAAACTGTCAAG--TAGAA--AA-GAA---ACGTC-TATT----C----AGTATGATAT----GT-AAAAGCAGGGCTTTCCCAGATAAGAAACT-TTCTCTTCTGGGATAGTCTCGTT
gi|94909 : TCTTTTCTGCCGATTATATTTTACAAGAGAAATTTTCTCTTCTAGAAATT-TAG-TTCAAA
gi|94909 : T-AAAAGCGAAACCATTCCAGAAGAGAAAAT-TTCTCTTCTGTGATTATCTCGTTaatatctcttacgttgctagcgagaaatttctccatgtcttatcttaacgaagcatttctcttgttctgcatatttctccgattacaacgagataatcacagaagagaaattttctcttctggaatggtttcgctttta
gi|94910 : tttgaactaaatttctagaagagaaaatttctcttgtaaaatataatcggcagaaaagaaatatctcttacgttgctagcgagaaatttctccatgtcttatcttaacgaagcatttctcttgttctgcatatttctccgattacAATATTTTACAAGAGAAATTTTCTCTTCTAGAAATT-GTG-TCCAAGTTCACGCGTTTGAAAGAATGAATCTTTCAAAACAGTCAAG--TTGAA--AA-GAA---ACGCCTTCTT----C----GGTATAATAA----GT-AAACGTG-GGCTCTCCCAGAAGAGAAAAA-TTCTCTTCTTGGATTGTCTCGTT
gi|94911 : aaAATATTTTACAAGAGAAATTTTCTCTTCTAGAACTT-TGG-TTCAAATGCACGCGTTTGAAAGAATGAATCTTTCAAAACTGTCAAG--TAGAA--AA-GAA---ACTTC-TCTT----C----AGAAAAATAT----TT-AAAAGCAGGGTTGTCCGAAAAGAGAAAAT-TTCTCTTCTGGGATTGTCTC
gi|94912 : AATATTTTACAAGAGAAATTTTCTCTTCTAGAAATT-TGG-TTCAAATGCACGCGTTTGAAAGAATGAATCTTTCAAAACTGTCAAG--TAGAA--AA-GAA---ATTTC-TCTT----C----AGAACAATAT----TT-AAAAGCAGGGTTGTCCCAGAAGAGAAAAT-TTCTCTTCTGGGATTGTCTCGTT
gi|94913 : AATATTTTACAAGAGAAATTTTCTCTTCTAGAAATT-TGG-TTCATATGCATGCGTTTTGAAGAATGAATCTTTCAAAACTGTCAAG--TAGAG--AA-GAA---ACTTC-TCTT----C----AGAATAAAAT----GT-AAAAGCAGGGCTGTCCCAGAAGAGAAATT-TTCTCTTCTGGGATTGTCTCGTT
gi|94914 : AATATTTCACAAGAGAAATTTTCTGTTATGGAAATT-TGG-TTCAAATGCACGCGTTTGAAAGGATGAATCTTTCAAAACTGTCAAA--TAGAAAGAA-GAA---ATTTC-TCTT----C----AG---------------AATAACAAAGCCCTCCCAGAAGAGAACAT-TTCACTTCTAGGATAGTCTCGTT
gi|94915 : AATAATTTACAAGAGAAATTTTCTCTTCTAGAAATT-GTG-TCCAATTGCACGCGTTTGAAAGAATGAATCTTTCAAAACAGTCAAG--TAGAA--AG-GAA---ACGTC-TCTG----T----AGTATAATAT----GT-AAAAGTGATATCCTTCCAGAAGAGACAAT-TTCTCTTCTAGGATTGTCTC
gi|94916 : AATATTTTACAAGAGAAATTTTCTCTTCTAGAAATT-ATG-TCCAAATG------------------AATTTTTCAAAACAGTCAAG--TAGAA--AA-AAA---AGT-A-TATT----T----AGTATAATAT----GT-AAAAGCGAGATCCTCCCAGAGGAGAAAAT-TTCCCTTCTAGGATTGTCTC
gi|94917 : ATATTTTACAAGAGAAATGTTCTGTTCTAGAAATT-TGG-TTAAAATTCACGCGTTTGAAAGA-TAAAACTGTCATAAATGTCAAG--TAGAA--AA-GAA---ACGTC-TCTT----C----AATATAATAT----GTAAAAAGCAAAACCCTCCCA-AAGAGAAAAT-TTCTCTTCTAGGATAGTCTCGTT
gi|94918 : TTC-TCTTGTT-C----TGCATAGTTTTCCGAT-TACAACGAGACAATACCAGAAGA-AAAATGTTCTCTTCTGGAAGGGCCTCGCT
gi|94918 : tacgagataT-AAAAGCGAGGCCCTTCCAGAAGAGAACAT-TTTTCTTCTGGTATTGTCTCGTTttta
gi|94919 : tacgagatattctcttgttctgcatagttttccgattacAAGCGAAACCATTCCAGAAGAGAAAAT-TTCTCTTCTGTGATCATCTCGTT
gi|94920 : ttctcttgttcagcatacttctccgattacT-AAAAACGATATCCTCCCAGAAGAGAAAAT-TTCTCTTCCAGGATTGTCTCGTT
gi|94921 : ttctcttgtcctgcatacttctcatattacT-AAAAGCAGGGCTGTCCCAGAAGAGAAATT-TTCTCTTCTGGGATTGTCTCGTT
gi|94922 : tattacT-AAAAGCGAAACCCTTCCAGAATAGAAAAA-ATCTCTTCTGTGATTGTCTCGTT
gi|94923 : ataacT-AAAAGCAAGGCTCTCCCAGAAGAGAAAAT-TTCTCTTCTGGGATAGTCTCGTT
gi|94924 : T-AAAAGCAGGGTTGTCCGAAAAGAGAAAAT-TTCTCTTCTGGGATTGTCTCATT
gi|94925 : T-AAAAGCAGGGTTGTCCCAGAAGAGAAAAT-TTCTCTTCTGGGATTGTCTCGTT
gi|94926 : T-AAAAGCAAGGCTCTCCCAGAAGAGAAAA-------TTCTGGGATAGTCTCGTT
gi|94927 : T-AAAAGCGAGACCCTCCTAGAAGAGAAAAT-TTCTCTTCTGGGATTGTCTCGTT
gi|94928 : T-AAAAGCGAGATCCTTCCAGAAGAGAAAAT-TTCTCTTCTAGGAGTGTCTCGTT
gi|94929 : T-AAAAGTGAAATCCTCCCAGAAGAGAAAAT-TTCTCTTCTAAGATTGTATCGTT
gi|94930 : T-AAAAGCAGGGCTTTCCCAGATAAGAAACT-TTCTCTTCTGGGATAGTCTCGTT
gi|94931 : T-AAACGTGGG-CTCTCCCAGAAGAGAAAAA-TTCTCTTCTTGGATTGTCTCGTT
gi|94932 : T-AAAAGTGAGGCACTATCACAAGAGAAAAT-TTCTCTTCCGGGATTGTCTCGTT
gi|94933 : T-AAAAGTGATATCCTTCCAGAAGAGACAAT-TTCTCTTCTAGGATTGTCTCATT
gi|94934 : T-AAAATCGAGATCCTTCCAGAAGAGAAAAT-ATCTCTTCTGGGAGTGTCCCATT
gi|94935 : -AAAAGCAAAACCCTCCCA-AAGAGAAAAT-TTCTCTTCTAGGATAGTCTCGTT
gi|94936 : T-AAAAGCGAAACCATTCCGGAAAAGAAAAT-TTCTCTTCTGAGATTGGCTCGTT
gi|94937 : T-AAAAGCGAGATCCTCCCAGAGGAGAAAAT-TTCCCTTCTAGGATTGTCTCTTT