lowQualScore : 1 1 111 22222 22222 11111111 1111 111111111 1 4444 1
lowQualScore : 4 9 7 111 111 1 1 3333 0 1 1 4 1 1 6666 333 1 1 5555555 1 11 11 44444 3 8 4444 1 11 33333 22222222 333 2222 6666 33 2 6 3 6666 4 6 3 3 444444444 3 6 2 7 4 4 777 6 4 0000 5 55 3
lowQualScore : . . . ... ... . . .... . . . . . . .... ... . . ....... . .. .. ..... . . .... . .. ..... ........ ... .... .... .. . . . .... . . . . ......... . . . . . . ... . . .... . .. .
lowQualScore : 6 4 4 777 777 0 0 3333 2 4 4 1 4 4 5555 444 4 4 9999999 4 99 99 33333 1 3 8888 9 33 88888 22222222 222 2222 1111 77 9 2 1 5555 9 8 6 3 555555555 6 4 8 1 0 0 000 0 4 9999 4 55 9
consensus : TTTTTGCGATTGAAAATGGGGAGATTT---TT---GTTA-TT-CCCGCGTA----AGT-CTG-GACAA-T-TCAATGACCTCGCGTGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTT---TNGCGATTGAAAATGNGGAGATTT---NTGTTA-TTCCCGCGT--ATC-A-GAGT---GT-C-A---CAATTTCAAT----CCATG----CACTTTTCAAC--AAGT-TACTGTTAGGA-AATT-TATGCAAACTAACACTGTCTTTAC----ATTTTGATTTCCTACAATTT-CTGATCGAACA---------CTGTTTT-CCCATATTGGCGTGTGTAAGCGCT-TA-AT---TACGGATCTCTAATAATCATAAACAAGCAGA-GCGATGCGATCAGCCATGTTTGTT--TACAGCGAATGACACGATGAC
Reference ( gi|125304 ) : TTTTTGAGATTGAAAATGAGGAGAATT---TT---GTTA-TT-CCCGCGTA----AAT-CTG-GACAA-T-TCAATGACCTCGCGTGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTT---AAGCGATTGAAAATGTGGATATTT---GTGTTA-TTCCCGCGT--ATC-A-GAGT---GT-C-A---CAATTTCAAT----CCATG----CACTTTTCAAC--AAGT-TACTGTTAGGA-AATT-TATGCAAACTAACACTGTCTTTAC----ATTTTAATTTCCTATAATTT-CTGATCGAATA---------CTGTTTT-CCCATATTGACTTGTATAAGCGCT-TA-AT---TACGAACCTCTAATAATCATAAACAAGC-GT-GCGATGCGATCATCCATGTTTGTT--TACAGTGAATGACACGATGAC
gi|125302 : TTTTTGCAATTGAAAGTGGGGAGATTT---TTATTGTTA-TT-CCCGCGTA----AAT-CTG-GACAA-T-TCAATGACCTCGTATGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTT---TAGCAATTGAAAAGGTGGAGATTT---GTGTTA-TTCCCGCGT--ATC-A-GAGT---GT-C-A---CAATTTCAAT----CCATG----CACTTTTCAAC--AAGT-TTCTGTTAGGA-AATT-AATGCAAACTAATACTGTTTTTAC----ATTTTAATTTCCTACAATTT-CTGATCGAACATTGTTTTCCCTGTTTT-CCCATATTGGCGTGTGTAAGCGCT-TA-AT---TACAGATTTCAAATAATCATAAACAAGCAGA-GCGATGTGATCAGCCATGTTTGTT--TACAGCGAATGACACGATGAC
gi|125305 : TTTTTGCGATTGAAAATGGGGAGATTT---CT---GTTA-TT-CCC---TA----AAT-ATG-GACAA-T-TCAATGATCTCGCATGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTT---TCGCGATTGAAAATGTGGAGATTT---GTGTTA-TTCCAGCGT--ATC-A-GAGT---GT-C-A---CAATTTCAAT----CCATG----CACTTTTCAAC--AAGT-TACTGTTAGGA-AATT-TATGCAAACTAACACTGTCTTAAC----ATTTTAATTTTCTACAATAT-CTGATCGAACA---------CTGTCTT-CCCATACTGGCGTGTGGAAGCGCT-TA-AT---TACGGATCTCTAATAATCATAAACAAACAGA-GCGATGCCATCAGTCATGTTTGTT--TACAGGGAATGACACGATGACaggt
gi|125309 : TTTTTGCGATTGAAAATGGGGAGATTT---TT---GTTA-GT-TCTGCGTA----AAT-CTT-GACAA-T-TCAATGACCTCGTGTGATC-ACTGA----TCAAC---T-GA-A-------ATGT-A--T--TGTTT---TTGCGATTGAAAATGTGGAGATGT---GTGCTA-CTCCCACGT--ATC-A-GAAT---GT-C-A---CAAGTTCAAT----CCATG----CACTTTTCAAC--AAGT-TGCTGTTAGGA-AATT-TATGCAAACTAACACTGTTTTTAC----ATTTTGATTTCCCACAATTT-CTGATCGAACA---------CTGTTTT-CCCATATTGGCGTGCGTAAACGCT-TA-AT---TACGGATCTCTAATAATCAGAAACAAGC-GT-GCGATGCGATCAGTTATGTTTGTT--TA-AGCGAATAACACGATGACaggt
gi|125311 : TTTTTGTGATCAAAAATGAGGAGATTT---TT---GTTA-TT-CCCTCGTA----AAT-CTG-GACAA-T-TCAATGAATTCGCGTGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTT---TAGCGGTTGAAAATGTGGTGATTT---GTGTAA-TTCCCGCGT--ATC-A-GAGT---GT-C-A---CAATTTCAAT----CCATG----CACTTTTCAAC--ACGT-TACTCTAAGGA-AATT-TATGCAAACTAACACCGTCTTTAC----ATTTAGATTTCCTACAATTT-CTGATCAAACA---------CTGTTTT-CCCATATTG----GCGTAAGCGGT-TA-AT---TACGGATCTCTCATAATCATAAACAAGC-ACAGCGATGCGATCAACCATGTTTGTT--TACAACGAACGACACGACGACaggt
gi|125312 : TTTTTACGGTTAAAAATGGGGAGA-TT---TT---GTTA-TT-CCTGCGTA----AAT-CTG-GACAA-T-TCAATGACCTCGCGTGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTT---TAGCGATTGGAATTTTGGAGATTT---GTGTTA-TTCCCGCGT--ATCAA-GAGT---GT-C-A---CAATTTCAGT----CCATG----CACTTTCCAAC--AAGaggt
gi|125313 : TTTTTGCGATTGAAAATGGGGAGATTT---TT---GTTG-TT-CCCGCATA----AGT-CTG-GACAA-T-TCAATGGTCTCGCATGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTT---TATTGATTGAAAATGTGGAGATTT---TTGTTA-TTCCCACGT--A------AGT---CTGG-A---CAATTT
gi|125315 : TTTTTGCAATTGAAATTG-GGAAATTT---TT---GTTA-TT-CTTGCGTA----AGT-ATG-GACAA-T-GCAATGAATTCGCGTGATC-ATTGA----TCAAC---T-GA-A-------ATGT-A--T--TGTTT---TAGCGATTGAAAATGTGGATATTT---TTGTTA-TTCCCGCGT--A---A-GCAT---G--G-A---CAATT
gi|125314 : TTTTTGCGATTGAAAATGGGTAT--TT---TT---GTTA-TT-CCCACGTA----GGT-CTG-GACAA-T-TTAATGACCTCGCGTAATC-ACTGA----TAGGT---T-GA-G-------ATGT-A--T--TGTTT---TA-CGATCGAAAATGTGGAGATTT---TTGTTA-TTCCCGCAT--A
gi|125340 : TTTTTGCGATTGAAAATGGGGAGATTT---TT---GTTA-GT-TCTGCGTA----AAT-CTT-GACAA-T-TCAATGACCTCGTGTGATC-ACTGA----TCAAC---T-GA-A-------ATGT-A--T--TGTT
gi|125316 : ataaatgtataatatatgttgTTTTAGCGATTGAAAATGTGGATATTT---TT---GTTA-TT-CCCGCGTA----AGC-ATG-GACAA-T-TCGATGACCTCGCGTGATC-ACTGA----T
gi|125317 : TTTTAGCGATTGGAAATGGGGAAATTT---TT---GTTA-TT-CCCGCGTA----AGC-ATG-GACAA-T-TCGATGACCTCGCATGATC-ACTGA----TA
gi|125318 : TTTTTATGATTGAAAATGTGGAGATTT---TT---GTTA-TTTCCCGCGCA----AGT-CTG-GACAA-T-TCGATGACCTCGCGTGACC-
gi|125333 : TTTTTGCGATTGAAAATGGGGAGATTT---TT---GTTG-TT-CCCGCATA----AGT-CTG-GACAA-T-TCAAT
gi|125310 : tgaaaaataaatatgttgTTTTTGCGATTGAAAATGTGGAGATGT---GT---GCTA-CT-CCCACGTATCAGAAT-GT--CACAAGT-TCAAT
gi|125337 : TTTTTGAGATTGAAAATGAGGAGAATT---TT---GTTA-TT-CCCGCGTA----
gi|125328 : ataaatatataatatatattgtTTTTAGCGATTGGAAATGGGGAAATTT---TT---GTTA-TT-CCCGCGTA----AGC-ATG-GACAA-T-T
gi|125308 : aatgctgcacaaatattaacaacctgtcattgaaaaataaattgaaacattgTTTTAGCGATTGAAATTGTGGAGATTT---GT---GTTA-TT-CCCGCGTA----
gi|125306 : TTTTCGCGATTGAAAATGTGGAGATTT---GT---GTTA-TT-CCAGCGTA----
gi|125303 : TTTTAGCAATTGAAAAGGTGGAGATTT---GT---GTTA-TT-CCCGCGTA----
gi|125332 : TTTTTGCAATTGAAATTG-GGAAATTT---TT---GTTA-TT-CTTGCGTA----
gi|125329 : tcattgaaaaataaattgaaacctattgTTTTTGTGATCAAAAATGAGGAGATTT---TT---GTTA-TT-CCCTCGTA----
gi|125334 : tggtccttgaaaaataaatattattgTTTTTGCGATTGAAAATGGGTAT--TT---TT---GTTA-TT-CCCACGTA----
gi|125345 : tgaaaaataaatatatcttgTTTTTGCGATTGAAAATGGGGAGATTT---CT---GTTA-TT-CCC
gi|125336 : aattgtatattgTTTTTGCAATTGAAAGTGGGGAGATTTTTATT---GTTA-TT-CCCGCGTA----
gi|125330 : ataaatgtatagatatatattgTTTTTATGATTGAAAATGTGGAGATTT---TT---GTTATTT-CCCGCGCA----
gi|125341 : tggtctactggaaaattaaatatataaatataaattgTTTTTACGGTTAAAAATGGGGAGA-TT---TT---GTTA-TT-CCTGCGTA----
gi|125319 : ataaatatataatatatattgTTTTGCGGTTGAAAATGGGGAGATTT---TA---ATTA-TT-CCCGCGTA----AAT-CTG-GACAA-T-TCAATGATCTCGCGTGATC-ACTGA----TTAAT---T-GA-A-------ATGT-A--T--TGTTT---TAGCGATTGAAATTGTGGAGATTT---GTGTTA-TTCCCGCGT--ATC-AAGAGT---GT-C-A---CAATTTCAAT----CCATG----CACTTTCCAAC--AAGT-TACTGTTAGGA-GATT-TATGCAAACTAACACTGTCATTAC----ATTTTTATTTCAAACAATTT-CTGATCGAATA---------CTGTTTT-CCCACATTGACGTGTGTTAGAGCT-TA-AT---TGCGGATTTCTTATAACCATAAACAAGCAGA-ACGATGCGATTAGCCATGTTTGTT--TACAGCAAGTGACACGATGAC
gi|125320 : TTTTACGATCGAAAATGTGGAGATTT---TT---GTTA-TT-CCCGCATA----ATT-CTG-GACAA-T-TCGATGACCTCGCATTATC-ACTGA----TAaggt
gi|125324 : TTTTGCGATTTAAATTGGTGATATTT---GT---GTAA-TT-CCCGCGTA----AGT-CTG-GTCAA-T-TCAATGACGTCGCGTGGTC-ACTGA----TA
gi|125331 : TTTTGCGATTTAAATTGGTGATATTT---GT---GTTA-TT-CCCGCATA----AAT-CTG-GTCAA-T-TCAATGACAACGCGTGGTC-ACTGA----TA
gi|125322 : ggtcattgaaaaataaattggaatgtgtttcTTTTGCGATTTAAATTGGTGATATTT---GT---GTTA-TT-CCCGCATA----AAT-CTG-GTCAA-T-TCAATGACAACGCGTGGTC-ACTGA----TAtgacactttgtacaaatagacgctatttttata
gi|125342 : TTTTGCGATTTAAATTGGGGATATTT---GT---GTTA-TT-CCCGTGTA----AGT-CTG-GTCAA-T-TCTATGACCTTGCATGGTC-ACTGA----CA
gi|125323 : ataaattgaaatgtgttgcTTTTGCGATTTAAATTGGGGATATTT---GT---GTTA-TT-CCCGTGTA----AGT-CTG-GTCAA-T-TCTATGACCTTGCATGGTC-ACTGA----CAtgacactatatacaaatagatgctgtttttataaaaactttaaaatttagtaaccatatgatatcttgcacatatttactttgtgaactgttacgctacacgaatataaacttacgatctctacaaaaataaataggcaaaccg
gi|125344 : TTTCGCAATTTAAATTGGGGATATTT---GT---GTTA-TT-CCCGAGTA----AGT-CTG-GTCAA-T-TCAATGACCACGCATGGTC-ACTGA----TA
gi|125321 : taaattggtgatatttgcTTTCGCAATTTAAATTGGGGATATTT---GT---GTTA-TT-CCCGAGTA----AGT-CTG-GTCAA-T-TCAATGACCACGCATGGTC-ACTGA----TAtgacactttatacaaatagacgctattttcata
gi|125343 : TTTTGCGATTTAAATTGGTGATATTT---GT---GTAA-TT-CCCGCGTA----
gi|125339 : ataaattgaaatgtgtttcTTTTGCGGTTGAAAATGGGGAGATTT---TA---ATTA-TT-CCCGCGTA----
gi|125326 : ataaatatataatatataGATTGAAAATGTGGAGATTT---TT---GTTA-TT-CCCACGTA----AGT-CTG-GACAA-T-TTGATGACCTCGCGTTATC-ACTGA----TA
gi|125325 : GATTGAAAATGTGGATATTT---GT---GTTA-TT-CCCGCGTA----
gi|125307 : gcTGAAAATGGGGAGATTT---TT---ATTA-TT-CCTACGTA----AAT-CTG-GACAA-T-TCAATGGCATCGCGTGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTAT---TAGCGATTGAAAATGTAGAGATTT---GTCTTA-TTCCCGCAT--ATC-A-GAGT---GT-C-A---CAATTTCGAT----CCATG----CACGTTTCAAC--AAAT-TACTGTTAGGA-AATT-TATGCAAACCAACACCGTTTTTAC----ATTTTGATTTCCTACAACTT-CTGATCAAACA---------CTGTTTT-CCTATATTGGCGTGTGTAAGCCCT-TA-AT---TACGGATCTCTATTAATCATAAACAAGCAGA-GCGATGCGATCAGCCATGTTTGTT--TACAGTGAATGACACGATGAC
gi|125338 : ttttagccaaTGAAAATGGGGAGATTT---TT---ATTA-TT-CCTACGTA----aggt
gi|125335 : ataaatatataaatatatattgttttagccaaTGTGGAGATTT---GT---GTTG-TT-CCCGCGTATC--AGT-GTGTCACAATT-TCAAT
gi|125327 : gataaattgaaatgtattgttCGCGTG----AGT-TTG-GAAAA-T-TCCATTACCTCGCGTGATC-ACTGccaagcacttttcaacaagttactgttaggaaatttacgcaaactatcactgtttatacattttgatttcctacaatttctgatcgaacactgttttaccatattggcgtgttaaagcgctatatattcatacggatctctaataatcataaacaagcagagcgatgcgatcagccatgtttgtttgtacagcgatgacacgacaggt
gi|125328 : ----AATGCTG-CACAAATATTAACAACCT------GTC-ATTGAAAAATAAAT---T-GA-A-------AC---A--T--TGTTT---TAGCGATTGGAAATGGGGAAATTT---TTGTTA-TTCCCGCGT--A---A-GCAT---G--G-A---CAATT
gi|125329 : TGGTC-CTTGA----AAAAT------A-A-------ATATTA--T--TGTTT---TTGTGATCAAAAATGAGGAGATTT---TTGTTA-TTCCCTCGT--A
gi|125330 : TGGTCTACTGG----AAAAT---T-AA-ATATATAAATAT-AAAT--TGTTT---TTATGATTGAAAATGTGGAGATTT---TTGTTATTTCCCGCGC--A
gi|125331 : GGTC-ATTGAAAAATAAAT---T-GG-A-------ATGT-G--T--TTCTT---TTGCGATTTAAATTGGTGATATTT---GTGTTA-TTCCCGCATAAATC-T-G------GT-C-AATTCAATGACAAC----GCGTG-------------------GT-CACTGATATGACACTT-TGTACAAATAGACGCTATTTTTAT----A
gi|125332 : TC-ATTGAAAAATAAAT---T-GA-A-------ACCT-A--T--TGTTT---TTGCAATTGAAATTG-GGAAATTT---TTGTTA-TTCTTGCGT--A
gi|125333 : TGA----AAAAT------A-A-------ATAT-G--T--TGTTT---TTGCGATTGAAAATGGGGAGATTT---TTGTTG-TTCCCGCAT--A------AGT---CTGG-A---CAA-TTCAAT----
gi|125334 : TGA----AAAAT------A-A-------ATAT-A--TCTTGTTT---TTGCGATTGAAAA--TGGGTATTT---TTGTTA-TTCCCACGT--A
gi|125335 : GA----TAAAT---T-GA-A-------ATGT-A--T--TGTT-----------------TGTGGAGATTT---GTGTTG-TTCCCGCGT--ATC-A-GTGT---GT-C-A---CAATTTCAAT----CCAAG----CACTTTTCAAC--AAGT-TACTGTTAGGA-AATT-TACGCAAACTATCACTGTTTATAC----ATTTTGATTTCCTACAATTT-CTGATCGAACA---------CTGTTTT-ACCATATTGGCGTGTTAAAGCGCTATATATTCATACGGATCTCTAATAATCATAAACAAGCAGA-GCGATGCGATCAGCCATGTTTGTTTGTACAGCG-ATGACACGA
gi|125340 : A----TAAATGTAT-AA-T-------ATAT-G--T--TGTTT---TTGCGATTGAAAATGGGGAGATTT---TTGTTA-GTTCTGCGT--A------AAT---CT-TGA---CAA-TTCAATGACCTCGTGTGATCACTGATCAACTGAAATGTATTGTTcaggt
gi|125342 : A----TAAAT---T-GA-A-------ATGT-G--T--TGCTT---TTGCGATTTAAATTGGGGATATTT---GTGTTA-TTCCCGTGT--A------AGTCTGGT-------CAAT-----T----CTATG-----ACCTTGCA----TGGT-CACTGACATGA-CACTATATACAAATAGATGCTGTTTTTATAAAAACTTTAA--------AATTTAGTAACCATATG---------ATATCTTGCACATATTTACTT
gi|125337 : A----TAAATATAT-AA-T-------ATAT-A--T--TGTTTTTTGAG--ATTGAAAATGAGGAGAATT---TTGTTA-TTCCCGCGT--Atgtgaactgttacgctacacgaatataaacttacgatctctacaaaaataaataggcaaaccg
gi|125343 : A----TAAAT---T-GA-A-------ATGT-G--T--TTCTT---TTGCGATTTAAATTGGTGATATTT---GTGTAA-TTCCCGCGT--A
gi|125339 : A----TAAATA--T-AT-A-------ATAT-A--T--ATTTT-----GCGGTTGAAAATGGGGAGATTT---TAATTA-TTCCCGCGT--A
gi|125336 : A----TAAATGTATAGA-T-------ATAT-A--T--TGTTT---TTGCAATTGAAAGTGGGGAGATTTTTATTGTTA-TTCCCGCGT--A
gi|125341 : A----TAAATATAT-AA-T-------ATAT-A--T--TGTTT---TTACGGTTAAAAATGGGGAGATTT----TGTTA-TTCCTGCGT--A
gi|125338 : A----TAAATATAT-AA-AT------ATAT-A--T--TGTTT---TAGCCAATGAAAATGGGGAGATTT---TTATTA-TTCCTACGT--A
gi|125344 : ----TAAAT---T-GGTG-------ATAT----T--TGCTT---TCGCAATTTAAATTGGGGATATTT---GTGTTA-TTCCCGAGT--A------AGTCTGGT-C-A----A--TTCAATGA--CCACG----CAT-----------GGT-CACTGATATGACACTT-TATACAAATAGACGCTATTTTCAT----A
gi|125345 : AAT---T-G-----------TAT-A--T--TGTTT---TTGCGATTGAAAATGGGGAGATTT---CTGTTA-TTCCC
gi|125316 : TTT---TAGCGATTGAAAATGTGGATATTT---TTGTTA-TTCCCGCGT--A---A-GCAT---G--G-A---CAATT
gi|125317 : TTT---TAGCGATTGGAAATGGGGAAATTT---TTGTTA-TTCCCGCGT--A---A-GCAT---G--G-A---CAATTcgatgacctcgcgtgatcactgat
gi|125320 : TTT---A--CGATCGAAAATGTGGAGATTT---TTGTTA-TTCCCGCAT--Acgatgacctcgcatgatcactgata
gi|125308 : tTTT---TAGCGATTGAAATTGTGGAGATTT---GTGTTA-TTCCCGCGT--Aattctggacaattcgatgacctcgcattatcactgata
gi|125303 : TTT---TAGCAATTGAAAAGGTGGAGATTT---GTGTTA-TTCCCGCGT--A
gi|125324 : GCGATTTAAATTGGTGATATTT---GTGTAA-TTCCCGCGT--A
gi|125322 : ttttGCGATTTAAATTGGTGATATTT---GTGTTA-TTCCCGCAT--Aagtctggtcaattcaatgacgtcgcgtggtcactgata
gi|125323 : ttttGCGATTTAAATTGGGGATATTT---GTGTTA-TTCCCGTGT--Aaatctggtcaattcaatgacaacgcgtggtcactgata
gi|125321 : ttttGCAATTTAAATTGGGGATATTT---GTGTTA-TTCCCGAGT--A------AGTCTGGT-C-A----A--TTCAATGA--CCACG----CAagtctggtcaattctatgaccttgcatggtcactgaca
gi|125310 : tttcGCGATTGAAAATGTGGAGATGT---GTGCTA-CTCCCACGT--ATC-A-GAAT---GT-C-A---CAAGTTCAAT----tggtcactgata
gi|125325 : tttttGCGATTGAAAATGTGGATATTT---GTGTTA-TTCCCGCGT--A
gi|125306 : GCGATTGAAAATGTGGAGATTT---GTGTTA-TTCCAGCGT--A
gi|125326 : ttttcGATTGAAAATGTGGAGATTT---TTGTTA-TTCCCACGT--A------AGT---CTGG-A---CAATTT
gi|125318 : GATTGAAAATGTGGAGATTT---TTGTTATTTCCCGCGC--Agatgacctcgcgttatcactgata
gi|125346 : tttttatGT---GT-C-A---CAATTCCAAT----CCATG----CATTTTTCAAC--AAGT-TACTGTTAGGA-AATT-TATGCAAACTAACACTGTCTTTAC----ATGTTGATTTCCTACAATTT-CTGAACGAACA---------CTGTTTT-CCCATATTGGCGTGTGTAAGCGCT-TA-AT---TGCGGATTTTTAATAATCATAAACATGCAGA-GCGATGCGATCAGCCATGATTGTT--TACATTGAATGACACGATGACagtctggacaattcgatgacctcgcgtgacc
gi|125347 : TTTT--AC--AAGT-TACTGTTAGGA-GATT-TATGCAAATTAACACTGTCATTAC----ATTTTTATTGCGTACAATTT-CTGATCGAACA---------CTTTCTT-ACCATATTGGCGTGTGTAAGCGCT-TA-AT---TGCGGACTTCTAATAACCATAAACAAGCAGA-ACGATATGATCGATCATCCTTGTT--TACAGCGAATGACAaggt
gi|125348 : AC--AAGT-TACTGTTAGGA-GATT-TATGCAAACTAACACTGTCATTAC----ATTTTTATTTCCTACAATTT-CTTATCGAACA---------CTGTTTT-CCCATATTGGCGTGTGTAAGCGCT-TA-AT---TGCGGATTTCTAATAACCATAAACAAACAGA-GCGATGCGATGGGCCATGTTTGTT--TACAGCGAATGACAGGTTGGC
Alignments
lowQualScore : 111 11111 111111111
lowQualScore : 0 0 222 1 1 1 1 6666 111 1 1 5555555 1 11 11 33 2 4444 1 11 00000 777 4 333 33 5 2 1 444444444 3 3 666 55
lowQualScore : . . ... . . . . .... ... . . ....... . .. .. .. . .... . .. ..... ... . ... .. . . . ......... . . ... ..
lowQualScore : 1 4 666 5 5 5 3 5555 000 4 4 9999999 4 99 99 99 2 3333 2 77 00000 888 4 999 77 7 9 2 555555555 6 6 444 00
consensus : TTTTTGCGATTGAAAATGGGGAGATTTTT---GTTATT-CCCGCGTAAGTCTGGACAA-T-TCAATGACCTCGCGTGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTTTN-GCGATTGAAAATGTGGAGATTT---GTGTTA-TTCCCGCGT--ATC-A-GAGT---GT-CA---CAATTTCAAT--CCATGCACTTTTCAACAAGTTACTGTTAGGA-AATT-TATGCAAACTAACACTGTCTTTACATTTTGATTTCCTACAATTTCTGATCGAACA---------CTGTTTTCCCATATTGGCGTGTGTAAGCGCT-TA-AT---TACGGATCTCTAATAATCATAAACAAGCAGAGCGATGCGATCAGCCATGTTTGTT--TACAGCGAATGACACGATGAC
Reference ( family-482 ) : TTTTTGCGATTGAAAATGGGGAGATTTTT---GTTATT-CCCGCGTAAGTCTGGACAA-T-TCAATGACCTCGCGTGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTTTN-GCGATTGAAAATGNGGAGATTT---NTGTTA-TTCCCGCGT--ATC-A-GAGT---GT-CA---CAATTTCAAT--CCATGCACTTTTCAACAAGTTACTGTTAGGA-AATT-TATGCAAACTAACACTGTCTTTACATTTTGATTTCCTACAATTTCTGATCGAACA---------CTGTTTTCCCATATTGGCGTGTGTAAGCGCT-TA-AT---TACGGATCTCTAATAATCATAAACAAGCAGAGCGATGCGATCAGCCATGTTTGTT--TACAGCGAATGACACGATGAC
gi|125302 : TTTTTGCAATTGAAAGTGGGGAGATTTTTATTGTTATT-CCCGCGTAAATCTGGACAA-T-TCAATGACCTCGTATGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTTTA-GCAATTGAAAAGGTGGAGATTT---GTGTTA-TTCCCGCGT--ATC-A-GAGT---GT-CA---CAATTTCAAT--CCATGCACTTTTCAACAAGTTTCTGTTAGGA-AATT-AATGCAAACTAATACTGTTTTTACATTTTAATTTCCTACAATTTCTGATCGAACATTGTTTTCCCTGTTTTCCCATATTGGCGTGTGTAAGCGCT-TA-AT---TACAGATTTCAAATAATCATAAACAAGCAGAGCGATGTGATCAGCCATGTTTGTT--TACAGCGAATGACACGATGAC
gi|125303 : TTTTA-GCAATTGAAAAGGTGGAGATTT---GTGTTA-TTCCCGCGT--Aaggt
gi|125304 : TTTTTGAGATTGAAAATGAGGAGAATTTT---GTTATT-CCCGCGTAAATCTGGACAA-T-TCAATGACCTCGCGTGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTTAA-GCGATTGAAAATGTGGATATTT---GTGTTA-TTCCCGCGT--ATC-A-GAGT---GT-CA---CAATTTCAAT--CCATGCACTTTTCAACAAGTTACTGTTAGGA-AATT-TATGCAAACTAACACTGTCTTTACATTTTAATTTCCTATAATTTCTGATCGAATA---------CTGTTTTCCCATATTGACTTGTATAAGCGCT-TA-AT---TACGAACCTCTAATAATCATAAACAAGC-GTGCGATGCGATCATCCATGTTTGTT--TACAGTGAATGACACGATGAC
gi|125305 : TTTTTGCGATTGAAAATGGGGAGATTTCT---GTTATT-CCC---TAAATATGGACAA-T-TCAATGATCTCGCATGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTTTC-GCGATTGAAAATGTGGAGATTT---GTGTTA-TTCCAGCGT--ATC-A-GAGT---GT-CA---CAATTTCAAT--CCATGCACTTTTCAACAAGTTACTGTTAGGA-AATT-TATGCAAACTAACACTGTCTTAACATTTTAATTTTCTACAATATCTGATCGAACA---------CTGTCTTCCCATACTGGCGTGTGGAAGCGCT-TA-AT---TACGGATCTCTAATAATCATAAACAAACAGAGCGATGCCATCAGTCATGTTTGTT--TACAGGGAATGACACGATGAC
gi|125306 : TTTTC-GCGATTGAAAATGTGGAGATTT---GTGTTA-TTCCAGCGT--Aaggt
gi|125307 : TTTTAGCCAATGAAAATGGGGAGATTTTT---ATTATT-CCTACGTAAATCTGGACAA-T-TCAATGGCATCGCGTGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTATTA-GCGATTGAAAATGTAGAGATTT---GTCTTA-TTCCCGCAT--ATC-A-GAGT---GT-CA---CAATTTCGAT--CCATGCACGTTTCAACAAATTACTGTTAGGA-AATT-TATGCAAACCAACACCGTTTTTACATTTTGATTTCCTACAACTTCTGATCAAACA---------CTGTTTTCCTATATTGGCGTGTGTAAGCCCT-TA-AT---TACGGATCTCTATTAATCATAAACAAGCAGAGCGATGCGATCAGCCATGTTTGTT--TACAGTGAATGACACGATGAC
gi|125308 : TTTTA-GCGATTGAAATTGTGGAGATTT---GTGTTA-TTCCCGCGT--Aaggt
gi|125309 : TTTTTGCGATTGAAAATGGGGAGATTTTT---GTTAGT-TCTGCGTAAATCTTGACAA-T-TCAATGACCTCGTGTGATC-ACTGA----TCAAC---T-GA-A-------ATGT-A--T--TGTTTTT-GCGATTGAAAATGTGGAGATGT---GTGCTA-CTCCCACGT--ATC-A-GAAT---GT-CA---CAAGTTCAAT--CCATGCACTTTTCAACAAGTTGCTGTTAGGA-AATT-TATGCAAACTAACACTGTTTTTACATTTTGATTTCCCACAATTTCTGATCGAACA---------CTGTTTTCCCATATTGGCGTGCGTAAACGCT-TA-AT---TACGGATCTCTAATAATCAGAAACAAGC-GTGCGATGCGATCAGTTATGTTTGTT--TA-AGCGAATAACACGATGAC
gi|125310 : TTTTT-GCGATTGAAAATGTGGAGATGT---GTGCTA-CTCCCACGT--ATC-A-GAAT---GT-CA---CAAGTTCAAT--aggt
gi|125311 : TTTTTGTGATCAAAAATGAGGAGATTTTT---GTTATT-CCCTCGTAAATCTGGACAA-T-TCAATGAATTCGCGTGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTTTA-GCGGTTGAAAATGTGGTGATTT---GTGTAA-TTCCCGCGT--ATC-A-GAGT---GT-CA---CAATTTCAAT--CCATGCACTTTTCAACACGTTACTCTAAGGA-AATT-TATGCAAACTAACACCGTCTTTACATTTAGATTTCCTACAATTTCTGATCAAACA---------CTGTTTTCCCATATTGGC----GTAAGCGGT-TA-AT---TACGGATCTCTCATAATCATAAACAAGCACAGCGATGCGATCAACCATGTTTGTT--TACAACGAACGACACGACGAC
gi|125312 : TTTTTACGGTTAAAAATGGGGAGATTTT----GTTATT-CCTGCGTAAATCTGGACAA-T-TCAATGACCTCGCGTGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTTTA-GCGATTGGAATTTTGGAGATTT---GTGTTA-TTCCCGCGT--ATCAA-GAGT---GT-CA---CAATTTCAGT--CCATGCACTTTCCAACAAGaggt
gi|125313 : TTTTTGCGATTGAAAATGGGGAGATTTTT---GTTGTT-CCCGCATAAGTCTGGACAA-T-TCAATGGTCTCGCATGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTTTA-TTGATTGAAAATGTGGAGATTT---TTGTTA-TTCCCACGT--A------AGT---CTGGA---CAATTT
gi|125314 : TTTTTGCGATTGAAAATGGGTA--TTTTT---GTTATT-CCCACGTAGGTCTGGACAA-T-TTAATGACCTCGCGTAATC-ACTGA----TAGGT---T-GA-G-------ATGT-A--T--TGTTTTA--CGATCGAAAATGTGGAGATTT---TTGTTA-TTCCCGCAT--A
gi|125315 : TTTTTGCAATTGAAA-TTGGGAAATTTTT---GTTATT-CTTGCGTAAGTATGGACAA-T-GCAATGAATTCGCGTGATC-ATTGA----TCAAC---T-GA-A-------ATGT-A--T--TGTTTTA-GCGATTGAAAATGTGGATATTT---TTGTTA-TTCCCGCGT--A---A-GCAT---G--GA---CAATT
gi|125316 : TTTTAGCGATTGAAAATGTGGATATTTTT---GTTATT-CCCGCGTAAGCATGGACAA-T-TCGATGACCTCGCGTGATC-ACTGA----T
gi|125317 : TTTTAGCGATTGGAAATGGGGAAATTTTT---GTTATT-CCCGCGTAAGCATGGACAA-T-TCGATGACCTCGCATGATC-ACTGA----TA
gi|125318 : TTTTTATGATTGAAAATGTGGAGATTTTT---GTTATTTCCCGCGCAAGTCTGGACAA-T-TCGATGACCTCGCGTGACC-
gi|125319 : TTTTGCGGTTGAAAATGGGGAGATTTTA---ATTATT-CCCGCGTAAATCTGGACAA-T-TCAATGATCTCGCGTGATC-ACTGA----TTAAT---T-GA-A-------ATGT-A--T--TGTTTTA-GCGATTGAAATTGTGGAGATTT---GTGTTA-TTCCCGCGT--ATC-AAGAGT---GT-CA---CAATTTCAAT--CCATGCACTTTCCAACAAGTTACTGTTAGGA-GATT-TATGCAAACTAACACTGTCATTACATTTTTATTTCAAACAATTTCTGATCGAATA---------CTGTTTTCCCACATTGACGTGTGTTAGAGCT-TA-AT---TGCGGATTTCTTATAACCATAAACAAGCAGAACGATGCGATTAGCCATGTTTGTT--TACAGCAAGTGACACGATGAC
gi|125320 : TTTTACGATCGAAAATGTGGAGATTTTT---GTTATT-CCCGCATAATTCTGGACAA-T-TCGATGACCTCGCATTATC-ACTGA----TAaggt
gi|125321 : TTTCGCAATTTAAATTGGGGATATTTGT---GTTATT-CCCGAGTAAGTCTGGTCAA-T-TCAATGACCACGCATGGTC-ACTGA----TA
gi|125322 : TTTTGCGATTTAAATTGGTGATATTTGT---GTTATT-CCCGCATAAATCTGGTCAA-T-TCAATGACAACGCGTGGTC-ACTGA----TA
gi|125323 : TTTTGCGATTTAAATTGGGGATATTTGT---GTTATT-CCCGTGTAAGTCTGGTCAA-T-TCTATGACCTTGCATGGTC-ACTGA----CA
gi|125324 : TTTTGCGATTTAAATTGGTGATATTTGT---GTAATT-CCCGCGTAAGTCTGGTCAA-T-TCAATGACGTCGCGTGGTC-ACTGA----TA
gi|125325 : -GCGATTGAAAATGTGGATATTT---GTGTTA-TTCCCGCGT--A
gi|125326 : GATTGAAAATGTGGAGATTTTT---GTTATT-CCCACGTAAGTCTGGACAA-T-TTGATGACCTCGCGTTATC-ACTGA----TA
gi|125327 : CGCGTGAGTTTGGAAAA-T-TCCATTACCTCGCGTGATC-ACTG
gi|125328 : CTGCACAAATATTAACAACCT------GTC-ATTGAAAAATAAAT---T-GA-A-------AC---A--T--TGTTTTA-GCGATTGGAAATGGGGAAATTT---TTGTTA-TTCCCGCGT--A---A-GCAT---G--GA---CAATT
gi|125329 : aatgTGGTC-CTTGA----AAAAT------A-A-------ATATTA--T--TGTTTTT-GTGATCAAAAATGAGGAGATTT---TTGTTA-TTCCCTCGT--A
gi|125330 : TGGTCTACTGG----AAAAT---T-AA-ATATATAAATAT-AAAT--TGTTTTT-ATGATTGAAAATGTGGAGATTT---TTGTTATTTCCCGCGC--A
gi|125331 : GGTC-ATTGAAAAATAAAT---T-GG-A-------ATGT-G--T--TTCTTTT-GCGATTTAAATTGGTGATATTT---GTGTTA-TTCCCGCATAAATC-T-G------GT-CAATTCAATGACAAC--GCGTG-------------GTCACTGATATGACACTT-TGTACAAATAGACGCTATTTTTATA
gi|125331 : TTTTGCGATTTAAATTGGTGATATTTGT---GTTATT-CCCGCATAAATCTGGTCAA-T-TCAATGACAACGCGTGGTC-ACTGA----TA
gi|125332 : ggtcattgaaaaataaattggaatgtgtttcTC-ATTGAAAAATAAAT---T-GA-A-------ACCT-A--T--TGTTTTT-GCAATTGAAATTG-GGAAATTT---TTGTTA-TTCTTGCGT--Atgacactttgtacaaatagacgctatttttata
gi|125333 : TGA----AAAAT------A-A-------ATAT-G--T--TGTTTTT-GCGATTGAAAATGGGGAGATTT---TTGTTG-TTCCCGCAT--A------AGT---CTGGA---CAA-TTCAAT--
gi|125333 : TTTTTGCGATTGAAAATGGGGAGATTTTT---GTTGTT-CCCGCATAAGTCTGGACAA-T-TCAAT
gi|125334 : tgaaaaataaatatgttgTGA----AAAAT------A-A-------ATAT-A--TCTTGTTTTT-GCGATTGAAAATGGG--TATTT---TTGTTA-TTCCCACGT--A
gi|125335 : GA----TAAAT---T-GA-A-------ATGT-A--T--TGTTT---------------GTGGAGATTT---GTGTTG-TTCCCGCGT--ATC-A-GTGT---GT-CA---CAATTTCAAT--CCAAGCACTTTTCAACAAGTTACTGTTAGGA-AATT-TACGCAAACTATCACTGTTTATACATTTTGATTTCCTACAATTTCTGATCGAACA---------CTGTTTTACCATATTGGCGTGTTAAAGCGCTATATATTCATACGGATCTCTAATAATCATAAACAAGCAGAGCGATGCGATCAGCCATGTTTGTTTGTACAGCG-ATGACACGA
gi|125336 : A----TAAATGTATAGA-T-------ATAT-A--T--TGTTTTT-GCAATTGAAAGTGGGGAGATTTTTATTGTTA-TTCCCGCGT--Acaggt
gi|125337 : A----TAAATATAT-AA-T-------ATAT-A--T--TGTTTTTTGAGATTGAAAATGAGGAGAATT---TTGTTA-TTCCCGCGT--A
gi|125337 : TTTTTGAGATTGAAAATGAGGAGAATTTT---GTTATT-CCCGCGTA
gi|125338 : ataaatatataatatatattgtA----TAAATATAT-AA-AT------ATAT-A--T--TGTTTTA-GCCAATGAAAATGGGGAGATTT---TTATTA-TTCCTACGT--A
gi|125339 : A----TAAATA--T-AT-A-------ATAT-A--T---ATTTT--GCGGTTGAAAATGGGGAGATTT---TAATTA-TTCCCGCGT--A
gi|125339 : TTTTGCGGTTGAAAATGGGGAGATTTTA---ATTATT-CCCGCGTA
gi|125340 : ataaatatataatatataTTTTTGCGATTGAAAATGGGGAGATTTTT---GTTAGT-TCTGCGTAAATCTTGACAA-T-TCAATGACCTCGTGTGATC-ACTGA----TCAAC---T-GA-A-------ATGT-A--T--TGTT
gi|125341 : ataaatgtataatatatgttgA----TAAATATAT-AA-T-------ATAT-A--T--TGTTTTT-ACGGTTAAAAATGGGGAGATTT----TGTTA-TTCCTGCGT--A
gi|125342 : A----TAAAT---T-GA-A-------ATGT-G--T--TGCTTTT-GCGATTTAAATTGGGGATATTT---GTGTTA-TTCCCGTGT--A------AGTCTGGT------CAAT-----T--CTATG-ACCTTGCA--TGGTCACTGACATGA-CACTATATACAAATAGATGCTGTTTTTATA
gi|125342 : TTTTGCGATTTAAATTGGGGATATTTGT---GTTATT-CCCGTGTAAGTCTGGTCAA-T-TCTATGACCTTGCATGGTC-ACTGA----CAaaaactttaaaatttagtaaccatatgatatcttgcacatatttactttgtgaactgttacgctacacgaatataaacttacgatctctacaaaaataaataggcaaaccg
gi|125343 : ataaattgaaatgtgttgcA----TAAAT---T-GA-A-------ATGT-G--T--TTCTTTT-GCGATTTAAATTGGTGATATTT---GTGTAA-TTCCCGCGT--Atgacactatatacaaatagatgctgtttttataaaaactttaaaatttagtaaccatatgatatcttgcacatatttactttgtgaactgttacgctacacgaatataaacttacgatctctacaaaaataaataggcaaaccg
gi|125344 : ----TAAAT---T-GGTG-------ATAT----T--TGCTTTC-GCAATTTAAATTGGGGATATTT---GTGTTA-TTCCCGAGT--A------AGTCTGGT-CA----A--TTCAATGACCACGCAT---------GGTCACTGATATGACACTT-TATACAAATAGACGCTATTTTCATA
gi|125344 : TTTCGCAATTTAAATTGGGGATATTTGT---GTTATT-CCCGAGTAAGTCTGGTCAA-T-TCAATGACCACGCATGGTC-ACTGA----TA
gi|125345 : taaattggtgatatttgcAAT---T-G-----------TAT-A--T--TGTTTTT-GCGATTGAAAATGGGGAGATTT---CTGTTA-TTCCCtgacactttatacaaatagacgctattttcata
gi|125346 : GT---GT-CA---CAATTCCAAT--CCATGCATTTTTCAACAAGTTACTGTTAGGA-AATT-TATGCAAACTAACACTGTCTTTACATGTTGATTTCCTACAATTTCTGAACGAACA---------CTGTTTTCCCATATTGGCGTGTGTAAGCGCT-TA-AT---TGCGGATTTTTAATAATCATAAACATGCAGAGCGATGCGATCAGCCATGATTGTT--TACATTGAATGACACGATGAC
gi|125347 : TTTT--ACAAGTTACTGTTAGGA-GATT-TATGCAAATTAACACTGTCATTACATTTTTATTGCGTACAATTTCTGATCGAACA---------CTTTCTTACCATATTGGCGTGTGTAAGCGCT-TA-AT---TGCGGACTTCTAATAACCATAAACAAGCAGAACGATATGATCGATCATCCTTGTT--TACAGCGAATGACAaggt
gi|125348 : ACAAGTTACTGTTAGGA-GATT-TATGCAAACTAACACTGTCATTACATTTTTATTTCCTACAATTTCTTATCGAACA---------CTGTTTTCCCATATTGGCGTGTGTAAGCGCT-TA-AT---TGCGGATTTCTAATAACCATAAACAAACAGAGCGATGCGATGGGCCATGTTTGTT--TACAGCGAATGACAGGTTGGC
Alignments
lowQualScore : 111 11111 111111111
lowQualScore : 0 222 222 1 1 1 1 6666 111 1 1 5555555 1 11 11 33 2 4444 1 11 00000 777 4 333 33 5 2 1 444444444 3 3 666 55
lowQualScore : . ... ... . . . . .... ... . . ....... . .. .. .. . .... . .. ..... ... . ... .. . . . ......... . . ... ..
lowQualScore : 1 222 222 2 4 4 3 5555 000 4 4 9999999 4 99 99 99 1 2222 2 77 00000 888 4 999 77 7 9 2 555555555 6 6 444 00
consensus : TTTTTGCGATTGAAAATGGGGAGATTT---TT---GTTATT-CCCGCGTAAGTCTGGACAA-T-TCAATGACCTCGCGTGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTTTN-GCGATTGAAAATGTGGAGATTT---GTGTTA-TTCCCGCGT--ATC-A-GAGT---GT-CA---CAATTTCAAT--CCATGCACTTTTCAACAAGTTACTGTTAGGA-AATT-TATGCAAACTAACACTGTCTTTACATTTTGATTTCCTACAATTTCTGATCGAACA---------CTGTTTTCCCATATTGGCGTGTGTAAGCGCT-TA-AT---TACGGATCTCTAATAATCATAAACAAGCAGAGCGATGCGATCAGCCATGTTTGTT--TACAGCGAATGACACGATGAC
Reference ( family-482 ) : TTTTTGCGATTGAAAATGGGGAGATTT---TT---GTTATT-CCCGCGTAAGTCTGGACAA-T-TCAATGACCTCGCGTGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTTTN-GCGATTGAAAATGTGGAGATTT---GTGTTA-TTCCCGCGT--ATC-A-GAGT---GT-CA---CAATTTCAAT--CCATGCACTTTTCAACAAGTTACTGTTAGGA-AATT-TATGCAAACTAACACTGTCTTTACATTTTGATTTCCTACAATTTCTGATCGAACA---------CTGTTTTCCCATATTGGCGTGTGTAAGCGCT-TA-AT---TACGGATCTCTAATAATCATAAACAAGCAGAGCGATGCGATCAGCCATGTTTGTT--TACAGCGAATGACACGATGAC
gi|125302 : TTTTTGCAATTGAAAGTGGGGAGATTT---TTATTGTTATT-CCCGCGTAAATCTGGACAA-T-TCAATGACCTCGTATGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTTTA-GCAATTGAAAAGGTGGAGATTT---GTGTTA-TTCCCGCGT--ATC-A-GAGT---GT-CA---CAATTTCAAT--CCATGCACTTTTCAACAAGTTTCTGTTAGGA-AATT-AATGCAAACTAATACTGTTTTTACATTTTAATTTCCTACAATTTCTGATCGAACATTGTTTTCCCTGTTTTCCCATATTGGCGTGTGTAAGCGCT-TA-AT---TACAGATTTCAAATAATCATAAACAAGCAGAGCGATGTGATCAGCCATGTTTGTT--TACAGCGAATGACACGATGAC
gi|125303 : TTTTA-GCAATTGAAAAGGTGGAGATTT---GTGTTA-TTCCCGCGT--Aaggt
gi|125304 : TTTTTGAGATTGAAAATGAGGAGAATT---TT---GTTATT-CCCGCGTAAATCTGGACAA-T-TCAATGACCTCGCGTGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTTAA-GCGATTGAAAATGTGGATATTT---GTGTTA-TTCCCGCGT--ATC-A-GAGT---GT-CA---CAATTTCAAT--CCATGCACTTTTCAACAAGTTACTGTTAGGA-AATT-TATGCAAACTAACACTGTCTTTACATTTTAATTTCCTATAATTTCTGATCGAATA---------CTGTTTTCCCATATTGACTTGTATAAGCGCT-TA-AT---TACGAACCTCTAATAATCATAAACAAGC-GTGCGATGCGATCATCCATGTTTGTT--TACAGTGAATGACACGATGAC
gi|125305 : TTTTTGCGATTGAAAATGGGGAGATTT---CT---GTTATT-CCC---TAAATATGGACAA-T-TCAATGATCTCGCATGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTTTC-GCGATTGAAAATGTGGAGATTT---GTGTTA-TTCCAGCGT--ATC-A-GAGT---GT-CA---CAATTTCAAT--CCATGCACTTTTCAACAAGTTACTGTTAGGA-AATT-TATGCAAACTAACACTGTCTTAACATTTTAATTTTCTACAATATCTGATCGAACA---------CTGTCTTCCCATACTGGCGTGTGGAAGCGCT-TA-AT---TACGGATCTCTAATAATCATAAACAAACAGAGCGATGCCATCAGTCATGTTTGTT--TACAGGGAATGACACGATGAC
gi|125306 : TTTTC-GCGATTGAAAATGTGGAGATTT---GTGTTA-TTCCAGCGT--Aaggt
gi|125307 : TTTTAGCCAATGAAAATGGGGAGATTT---TT---ATTATT-CCTACGTAAATCTGGACAA-T-TCAATGGCATCGCGTGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTATTA-GCGATTGAAAATGTAGAGATTT---GTCTTA-TTCCCGCAT--ATC-A-GAGT---GT-CA---CAATTTCGAT--CCATGCACGTTTCAACAAATTACTGTTAGGA-AATT-TATGCAAACCAACACCGTTTTTACATTTTGATTTCCTACAACTTCTGATCAAACA---------CTGTTTTCCTATATTGGCGTGTGTAAGCCCT-TA-AT---TACGGATCTCTATTAATCATAAACAAGCAGAGCGATGCGATCAGCCATGTTTGTT--TACAGTGAATGACACGATGAC
gi|125308 : TTTTA-GCGATTGAAATTGTGGAGATTT---GTGTTA-TTCCCGCGT--Aaggt
gi|125309 : TTTTTGCGATTGAAAATGGGGAGATTT---TT---GTTAGT-TCTGCGTAAATCTTGACAA-T-TCAATGACCTCGTGTGATC-ACTGA----TCAAC---T-GA-A-------ATGT-A--T--TGTTTTT-GCGATTGAAAATGTGGAGATGT---GTGCTA-CTCCCACGT--ATC-A-GAAT---GT-CA---CAAGTTCAAT--CCATGCACTTTTCAACAAGTTGCTGTTAGGA-AATT-TATGCAAACTAACACTGTTTTTACATTTTGATTTCCCACAATTTCTGATCGAACA---------CTGTTTTCCCATATTGGCGTGCGTAAACGCT-TA-AT---TACGGATCTCTAATAATCAGAAACAAGC-GTGCGATGCGATCAGTTATGTTTGTT--TA-AGCGAATAACACGATGAC
gi|125310 : TTTTT-GCGATTGAAAATGTGGAGATGT---GTGCTA-CTCCCACGT--ATC-A-GAAT---GT-CA---CAAGTTCAAT--aggt
gi|125311 : TTTTTGTGATCAAAAATGAGGAGATTT---TT---GTTATT-CCCTCGTAAATCTGGACAA-T-TCAATGAATTCGCGTGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTTTA-GCGGTTGAAAATGTGGTGATTT---GTGTAA-TTCCCGCGT--ATC-A-GAGT---GT-CA---CAATTTCAAT--CCATGCACTTTTCAACACGTTACTCTAAGGA-AATT-TATGCAAACTAACACCGTCTTTACATTTAGATTTCCTACAATTTCTGATCAAACA---------CTGTTTTCCCATATTGGC----GTAAGCGGT-TA-AT---TACGGATCTCTCATAATCATAAACAAGCACAGCGATGCGATCAACCATGTTTGTT--TACAACGAACGACACGACGAC
gi|125312 : TTTTTACGGTTAAAAATGGGGAGATTT---T----GTTATT-CCTGCGTAAATCTGGACAA-T-TCAATGACCTCGCGTGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTTTA-GCGATTGGAATTTTGGAGATTT---GTGTTA-TTCCCGCGT--ATCAA-GAGT---GT-CA---CAATTTCAGT--CCATGCACTTTCCAACAAGaggt
gi|125313 : TTTTTGCGATTGAAAATGGGGAGATTT---TT---GTTGTT-CCCGCATAAGTCTGGACAA-T-TCAATGGTCTCGCATGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTTTA-TTGATTGAAAATGTGGAGATTT---TTGTTA-TTCCCACGT--A------AGT---CTGGA---CAATTT
gi|125314 : TTTTTGCGATTGAAAATGGGTA--TTT---TT---GTTATT-CCCACGTAGGTCTGGACAA-T-TTAATGACCTCGCGTAATC-ACTGA----TAGGT---T-GA-G-------ATGT-A--T--TGTTTTA--CGATCGAAAATGTGGAGATTT---TTGTTA-TTCCCGCAT--A
gi|125315 : TTTTTGCAATTGAAA-TTGGGAAATTT---TT---GTTATT-CTTGCGTAAGTATGGACAA-T-GCAATGAATTCGCGTGATC-ATTGA----TCAAC---T-GA-A-------ATGT-A--T--TGTTTTA-GCGATTGAAAATGTGGATATTT---TTGTTA-TTCCCGCGT--A---A-GCAT---G--GA---CAATT
gi|125316 : TTTTAGCGATTGAAAATGTGGATATTT---TT---GTTATT-CCCGCGTAAGCATGGACAA-T-TCGATGACCTCGCGTGATC-ACTGA----T
gi|125317 : TTTTAGCGATTGGAAATGGGGAAATTT---TT---GTTATT-CCCGCGTAAGCATGGACAA-T-TCGATGACCTCGCATGATC-ACTGA----TA
gi|125318 : TTTTTATGATTGAAAATGTGGAGATTT---TT---GTTATTTCCCGCGCAAGTCTGGACAA-T-TCGATGACCTCGCGTGACC-
gi|125319 : TTTTGCGGTTGAAAATGGGGAGATTT---TA---ATTATT-CCCGCGTAAATCTGGACAA-T-TCAATGATCTCGCGTGATC-ACTGA----TTAAT---T-GA-A-------ATGT-A--T--TGTTTTA-GCGATTGAAATTGTGGAGATTT---GTGTTA-TTCCCGCGT--ATC-AAGAGT---GT-CA---CAATTTCAAT--CCATGCACTTTCCAACAAGTTACTGTTAGGA-GATT-TATGCAAACTAACACTGTCATTACATTTTTATTTCAAACAATTTCTGATCGAATA---------CTGTTTTCCCACATTGACGTGTGTTAGAGCT-TA-AT---TGCGGATTTCTTATAACCATAAACAAGCAGAACGATGCGATTAGCCATGTTTGTT--TACAGCAAGTGACACGATGAC
gi|125320 : TTTTACGATCGAAAATGTGGAGATTT---TT---GTTATT-CCCGCATAATTCTGGACAA-T-TCGATGACCTCGCATTATC-ACTGA----TAaggt
gi|125321 : TTTCGCAATTTAAATTGGGGATATTT---GT---GTTATT-CCCGAGTAAGTCTGGTCAA-T-TCAATGACCACGCATGGTC-ACTGA----TA
gi|125322 : TTTTGCGATTTAAATTGGTGATATTT---GT---GTTATT-CCCGCATAAATCTGGTCAA-T-TCAATGACAACGCGTGGTC-ACTGA----TA
gi|125323 : TTTTGCGATTTAAATTGGGGATATTT---GT---GTTATT-CCCGTGTAAGTCTGGTCAA-T-TCTATGACCTTGCATGGTC-ACTGA----CA
gi|125324 : TTTTGCGATTTAAATTGGTGATATTT---GT---GTAATT-CCCGCGTAAGTCTGGTCAA-T-TCAATGACGTCGCGTGGTC-ACTGA----TA
gi|125325 : -GCGATTGAAAATGTGGATATTT---GTGTTA-TTCCCGCGT--A
gi|125326 : GATTGAAAATGTGGAGATTT---TT---GTTATT-CCCACGTAAGTCTGGACAA-T-TTGATGACCTCGCGTTATC-ACTGA----TA
gi|125327 : CGCGTGAGTTTGGAAAA-T-TCCATTACCTCGCGTGATC-ACTG
gi|125328 : CTGCACAAATATTAACAACCT------GTC-ATTGAAAAATAAAT---T-GA-A-------AC---A--T--TGTTTTA-GCGATTGGAAATGGGGAAATTT---TTGTTA-TTCCCGCGT--A---A-GCAT---G--GA---CAATT
gi|125328 : aatgTTTTAGCGATTGGAAATGGGGAAATTT---TT---GTTATT-CCCGCGTAAGCATGGACAA-T-T
gi|125329 : aatgctgcacaaatattaacaacctgtcattgaaaaataaattgaaacattgTGGTC-CTTGA----AAAAT------A-A-------ATATTA--T--TGTTTTT-GTGATCAAAAATGAGGAGATTT---TTGTTA-TTCCCTCGT--A
gi|125330 : TGGTCTACTGG----AAAAT---T-AA-ATATATAAATAT-AAAT--TGTTTTT-ATGATTGAAAATGTGGAGATTT---TTGTTATTTCCCGCGC--A
gi|125331 : GGTC-ATTGAAAAATAAAT---T-GG-A-------ATGT-G--T--TTCTTTT-GCGATTTAAATTGGTGATATTT---GTGTTA-TTCCCGCATAAATC-T-G------GT-CAATTCAATGACAAC--GCGTG-------------GTCACTGATATGACACTT-TGTACAAATAGACGCTATTTTTATA
gi|125331 : TTTTGCGATTTAAATTGGTGATATTT---GT---GTTATT-CCCGCATAAATCTGGTCAA-T-TCAATGACAACGCGTGGTC-ACTGA----TA
gi|125332 : ggtcattgaaaaataaattggaatgtgtttcTC-ATTGAAAAATAAAT---T-GA-A-------ACCT-A--T--TGTTTTT-GCAATTGAAATTG-GGAAATTT---TTGTTA-TTCTTGCGT--Atgacactttgtacaaatagacgctatttttata
gi|125333 : TGA----AAAAT------A-A-------ATAT-G--T--TGTTTTT-GCGATTGAAAATGGGGAGATTT---TTGTTG-TTCCCGCAT--A------AGT---CTGGA---CAA-TTCAAT--
gi|125333 : TTTTTGCGATTGAAAATGGGGAGATTT---TT---GTTGTT-CCCGCATAAGTCTGGACAA-T-TCAAT
gi|125334 : tgaaaaataaatatgttgTGA----AAAAT------A-A-------ATAT-A--TCTTGTTTTT-GCGATTGAAAA--TGGGTATTT---TTGTTA-TTCCCACGT--A
gi|125334 : TTTTTGCGATTGAAAATGGG--TATTT---TT---GTTATT-CCCACGTA
gi|125335 : tgaaaaataaatatatcttgGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTT---------------GTGGAGATTT---GTGTTG-TTCCCGCGT--ATC-A-GTGT---GT-CA---CAATTTCAAT--CCAAGCACTTTTCAACAAGTTACTGTTAGGA-AATT-TACGCAAACTATCACTGTTTATACATTTTGATTTCCTACAATTTCTGATCGAACA---------CTGTTTTACCATATTGGCGTGTTAAAGCGCTATATATTCATACGGATCTCTAATAATCATAAACAAGCAGAGCGATGCGATCAGCCATGTTTGTTTGTACAGCG-ATGACACGA
gi|125336 : A----TAAATGTATAGA-T-------ATAT-A--T--TGTTTTT-GCAATTGAAAGTGGGGAGATTTTTATTGTTA-TTCCCGCGT--Acaggt
gi|125336 : TTTTTGCAATTGAAAGTGGGGAGATTTTTATT---GTTATT-CCCGCGTA
gi|125337 : ataaatgtatagatatatattgA----TAAATATAT-AA-T-------ATAT-A--T--TGTTTTTTGAGATTGAAAATGAGGAGAATT---TTGTTA-TTCCCGCGT--A
gi|125337 : TTTTTGAGATTGAAAATGAGGAGAATT---TT---GTTATT-CCCGCGTA
gi|125338 : ataaatatataatatatattgtA----TAAATATAT-AA-AT------ATAT-A--T--TGTTTTA-GCCAATGAAAATGGGGAGATTT---TTATTA-TTCCTACGT--A
gi|125338 : TTTTAGCCAATGAAAATGGGGAGATTT---TT---ATTATT-CCTACGTA
gi|125339 : ataaatatataaatatatattgA----TAAATA--T-AT-A-------ATAT-A--T---ATTTT--GCGGTTGAAAATGGGGAGATTT---TAATTA-TTCCCGCGT--A
gi|125339 : TTTTGCGGTTGAAAATGGGGAGATTT---TA---ATTATT-CCCGCGTA
gi|125340 : ataaatatataatatataTTTTTGCGATTGAAAATGGGGAGATTT---TT---GTTAGT-TCTGCGTAAATCTTGACAA-T-TCAATGACCTCGTGTGATC-ACTGA----TCAAC---T-GA-A-------ATGT-A--T--TGTT
gi|125341 : ataaatgtataatatatgttgA----TAAATATAT-AA-T-------ATAT-A--T--TGTTTTT-ACGGTTAAAAATGGGGAGATTT----TGTTA-TTCCTGCGT--A
gi|125342 : A----TAAAT---T-GA-A-------ATGT-G--T--TGCTTTT-GCGATTTAAATTGGGGATATTT---GTGTTA-TTCCCGTGT--A------AGTCTGGT------CAAT-----T--CTATG-ACCTTGCA--TGGTCACTGACATGA-CACTATATACAAATAGATGCTGTTTTTATA
gi|125342 : TTTTGCGATTTAAATTGGGGATATTT---GT---GTTATT-CCCGTGTAAGTCTGGTCAA-T-TCTATGACCTTGCATGGTC-ACTGA----CAaaaactttaaaatttagtaaccatatgatatcttgcacatatttactttgtgaactgttacgctacacgaatataaacttacgatctctacaaaaataaataggcaaaccg
gi|125343 : ataaattgaaatgtgttgcA----TAAAT---T-GA-A-------ATGT-G--T--TTCTTTT-GCGATTTAAATTGGTGATATTT---GTGTAA-TTCCCGCGT--Atgacactatatacaaatagatgctgtttttataaaaactttaaaatttagtaaccatatgatatcttgcacatatttactttgtgaactgttacgctacacgaatataaacttacgatctctacaaaaataaataggcaaaccg
gi|125344 : ----TAAAT---T-GGTG-------ATAT----T--TGCTTTC-GCAATTTAAATTGGGGATATTT---GTGTTA-TTCCCGAGT--A------AGTCTGGT-CA----A--TTCAATGACCACGCAT---------GGTCACTGATATGACACTT-TATACAAATAGACGCTATTTTCATA
gi|125344 : TTTCGCAATTTAAATTGGGGATATTT---GT---GTTATT-CCCGAGTAAGTCTGGTCAA-T-TCAATGACCACGCATGGTC-ACTGA----TA
gi|125345 : taaattggtgatatttgcAAT---T-G-----------TAT-A--T--TGTTTTT-GCGATTGAAAATGGGGAGATTT---CTGTTA-TTCCCtgacactttatacaaatagacgctattttcata
gi|125345 : TTTTTGCGATTGAAAATGGGGAGATTT---CT---GTTATT-CCC
gi|125346 : aattgtatattgGT---GT-CA---CAATTCCAAT--CCATGCATTTTTCAACAAGTTACTGTTAGGA-AATT-TATGCAAACTAACACTGTCTTTACATGTTGATTTCCTACAATTTCTGAACGAACA---------CTGTTTTCCCATATTGGCGTGTGTAAGCGCT-TA-AT---TGCGGATTTTTAATAATCATAAACATGCAGAGCGATGCGATCAGCCATGATTGTT--TACATTGAATGACACGATGAC
gi|125347 : TTTT--ACAAGTTACTGTTAGGA-GATT-TATGCAAATTAACACTGTCATTACATTTTTATTGCGTACAATTTCTGATCGAACA---------CTTTCTTACCATATTGGCGTGTGTAAGCGCT-TA-AT---TGCGGACTTCTAATAACCATAAACAAGCAGAACGATATGATCGATCATCCTTGTT--TACAGCGAATGACAaggt
gi|125348 : ACAAGTTACTGTTAGGA-GATT-TATGCAAACTAACACTGTCATTACATTTTTATTTCCTACAATTTCTTATCGAACA---------CTGTTTTCCCATATTGGCGTGTGTAAGCGCT-TA-AT---TGCGGATTTCTAATAACCATAAACAAACAGAGCGATGCGATGGGCCATGTTTGTT--TACAGCGAATGACAGGTTGGC
Alignments
lowQualScore : 111 11111 111111111
lowQualScore : 0 222 222 1 1 1 1 6666 111 1 1 5555555 1 11 11 33 2 4444 1 11 00000 777 4 333 33 5 2 1 444444444 3 3 666 55
lowQualScore : . ... ... . . . . .... ... . . ....... . .. .. .. . .... . .. ..... ... . ... .. . . . ......... . . ... ..
lowQualScore : 1 222 222 2 4 4 3 5555 000 4 4 9999999 4 99 99 99 1 2222 2 77 00000 888 4 999 77 7 9 2 555555555 6 6 444 00
consensus : TTTTTGCGATTGAAAATGGGGAGATTT---TT---GTTATT-CCCGCGTAAGTCTGGACAA-T-TCAATGACCTCGCGTGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTTTN-GCGATTGAAAATGTGGAGATTT---GTGTTA-TTCCCGCGT--ATC-A-GAGT---GT-CA---CAATTTCAAT--CCATGCACTTTTCAACAAGTTACTGTTAGGA-AATT-TATGCAAACTAACACTGTCTTTACATTTTGATTTCCTACAATTTCTGATCGAACA---------CTGTTTTCCCATATTGGCGTGTGTAAGCGCT-TA-AT---TACGGATCTCTAATAATCATAAACAAGCAGAGCGATGCGATCAGCCATGTTTGTT--TACAGCGAATGACACGATGAC
Reference ( family-482 ) : TTTTTGCGATTGAAAATGGGGAGATTT---TT---GTTATT-CCCGCGTAAGTCTGGACAA-T-TCAATGACCTCGCGTGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTTTN-GCGATTGAAAATGTGGAGATTT---GTGTTA-TTCCCGCGT--ATC-A-GAGT---GT-CA---CAATTTCAAT--CCATGCACTTTTCAACAAGTTACTGTTAGGA-AATT-TATGCAAACTAACACTGTCTTTACATTTTGATTTCCTACAATTTCTGATCGAACA---------CTGTTTTCCCATATTGGCGTGTGTAAGCGCT-TA-AT---TACGGATCTCTAATAATCATAAACAAGCAGAGCGATGCGATCAGCCATGTTTGTT--TACAGCGAATGACACGATGAC
gi|125302 : TTTTTGCAATTGAAAGTGGGGAGATTT---TTATTGTTATT-CCCGCGTAAATCTGGACAA-T-TCAATGACCTCGTATGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTTTA-GCAATTGAAAAGGTGGAGATTT---GTGTTA-TTCCCGCGT--ATC-A-GAGT---GT-CA---CAATTTCAAT--CCATGCACTTTTCAACAAGTTTCTGTTAGGA-AATT-AATGCAAACTAATACTGTTTTTACATTTTAATTTCCTACAATTTCTGATCGAACATTGTTTTCCCTGTTTTCCCATATTGGCGTGTGTAAGCGCT-TA-AT---TACAGATTTCAAATAATCATAAACAAGCAGAGCGATGTGATCAGCCATGTTTGTT--TACAGCGAATGACACGATGAC
gi|125303 : TTTTA-GCAATTGAAAAGGTGGAGATTT---GTGTTA-TTCCCGCGT--Aaggt
gi|125304 : TTTTTGAGATTGAAAATGAGGAGAATT---TT---GTTATT-CCCGCGTAAATCTGGACAA-T-TCAATGACCTCGCGTGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTTAA-GCGATTGAAAATGTGGATATTT---GTGTTA-TTCCCGCGT--ATC-A-GAGT---GT-CA---CAATTTCAAT--CCATGCACTTTTCAACAAGTTACTGTTAGGA-AATT-TATGCAAACTAACACTGTCTTTACATTTTAATTTCCTATAATTTCTGATCGAATA---------CTGTTTTCCCATATTGACTTGTATAAGCGCT-TA-AT---TACGAACCTCTAATAATCATAAACAAGC-GTGCGATGCGATCATCCATGTTTGTT--TACAGTGAATGACACGATGAC
gi|125305 : TTTTTGCGATTGAAAATGGGGAGATTT---CT---GTTATT-CCC---TAAATATGGACAA-T-TCAATGATCTCGCATGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTTTC-GCGATTGAAAATGTGGAGATTT---GTGTTA-TTCCAGCGT--ATC-A-GAGT---GT-CA---CAATTTCAAT--CCATGCACTTTTCAACAAGTTACTGTTAGGA-AATT-TATGCAAACTAACACTGTCTTAACATTTTAATTTTCTACAATATCTGATCGAACA---------CTGTCTTCCCATACTGGCGTGTGGAAGCGCT-TA-AT---TACGGATCTCTAATAATCATAAACAAACAGAGCGATGCCATCAGTCATGTTTGTT--TACAGGGAATGACACGATGAC
gi|125306 : TTTTC-GCGATTGAAAATGTGGAGATTT---GTGTTA-TTCCAGCGT--Aaggt
gi|125307 : TTTTAGCCAATGAAAATGGGGAGATTT---TT---ATTATT-CCTACGTAAATCTGGACAA-T-TCAATGGCATCGCGTGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTATTA-GCGATTGAAAATGTAGAGATTT---GTCTTA-TTCCCGCAT--ATC-A-GAGT---GT-CA---CAATTTCGAT--CCATGCACGTTTCAACAAATTACTGTTAGGA-AATT-TATGCAAACCAACACCGTTTTTACATTTTGATTTCCTACAACTTCTGATCAAACA---------CTGTTTTCCTATATTGGCGTGTGTAAGCCCT-TA-AT---TACGGATCTCTATTAATCATAAACAAGCAGAGCGATGCGATCAGCCATGTTTGTT--TACAGTGAATGACACGATGAC
gi|125308 : TTTTA-GCGATTGAAATTGTGGAGATTT---GTGTTA-TTCCCGCGT--Aaggt
gi|125309 : TTTTTGCGATTGAAAATGGGGAGATTT---TT---GTTAGT-TCTGCGTAAATCTTGACAA-T-TCAATGACCTCGTGTGATC-ACTGA----TCAAC---T-GA-A-------ATGT-A--T--TGTTTTT-GCGATTGAAAATGTGGAGATGT---GTGCTA-CTCCCACGT--ATC-A-GAAT---GT-CA---CAAGTTCAAT--CCATGCACTTTTCAACAAGTTGCTGTTAGGA-AATT-TATGCAAACTAACACTGTTTTTACATTTTGATTTCCCACAATTTCTGATCGAACA---------CTGTTTTCCCATATTGGCGTGCGTAAACGCT-TA-AT---TACGGATCTCTAATAATCAGAAACAAGC-GTGCGATGCGATCAGTTATGTTTGTT--TA-AGCGAATAACACGATGAC
gi|125310 : TTTTT-GCGATTGAAAATGTGGAGATGT---GTGCTA-CTCCCACGT--ATC-A-GAAT---GT-CA---CAAGTTCAAT--aggt
gi|125311 : TTTTTGTGATCAAAAATGAGGAGATTT---TT---GTTATT-CCCTCGTAAATCTGGACAA-T-TCAATGAATTCGCGTGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTTTA-GCGGTTGAAAATGTGGTGATTT---GTGTAA-TTCCCGCGT--ATC-A-GAGT---GT-CA---CAATTTCAAT--CCATGCACTTTTCAACACGTTACTCTAAGGA-AATT-TATGCAAACTAACACCGTCTTTACATTTAGATTTCCTACAATTTCTGATCAAACA---------CTGTTTTCCCATATTGGC----GTAAGCGGT-TA-AT---TACGGATCTCTCATAATCATAAACAAGCACAGCGATGCGATCAACCATGTTTGTT--TACAACGAACGACACGACGAC
gi|125312 : TTTTTACGGTTAAAAATGGGGAGATTT---T----GTTATT-CCTGCGTAAATCTGGACAA-T-TCAATGACCTCGCGTGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTTTA-GCGATTGGAATTTTGGAGATTT---GTGTTA-TTCCCGCGT--ATCAA-GAGT---GT-CA---CAATTTCAGT--CCATGCACTTTCCAACAAGaggt
gi|125313 : TTTTTGCGATTGAAAATGGGGAGATTT---TT---GTTGTT-CCCGCATAAGTCTGGACAA-T-TCAATGGTCTCGCATGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTTTA-TTGATTGAAAATGTGGAGATTT---TTGTTA-TTCCCACGT--A------AGT---CTGGA---CAATTT
gi|125314 : TTTTTGCGATTGAAAATGGGTA--TTT---TT---GTTATT-CCCACGTAGGTCTGGACAA-T-TTAATGACCTCGCGTAATC-ACTGA----TAGGT---T-GA-G-------ATGT-A--T--TGTTTTA--CGATCGAAAATGTGGAGATTT---TTGTTA-TTCCCGCAT--A
gi|125315 : TTTTTGCAATTGAAA-TTGGGAAATTT---TT---GTTATT-CTTGCGTAAGTATGGACAA-T-GCAATGAATTCGCGTGATC-ATTGA----TCAAC---T-GA-A-------ATGT-A--T--TGTTTTA-GCGATTGAAAATGTGGATATTT---TTGTTA-TTCCCGCGT--A---A-GCAT---G--GA---CAATT
gi|125316 : TTTTAGCGATTGAAAATGTGGATATTT---TT---GTTATT-CCCGCGTAAGCATGGACAA-T-TCGATGACCTCGCGTGATC-ACTGA----T
gi|125317 : TTTTAGCGATTGGAAATGGGGAAATTT---TT---GTTATT-CCCGCGTAAGCATGGACAA-T-TCGATGACCTCGCATGATC-ACTGA----TA
gi|125318 : TTTTTATGATTGAAAATGTGGAGATTT---TT---GTTATTTCCCGCGCAAGTCTGGACAA-T-TCGATGACCTCGCGTGACC-
gi|125319 : TTTTGCGGTTGAAAATGGGGAGATTT---TA---ATTATT-CCCGCGTAAATCTGGACAA-T-TCAATGATCTCGCGTGATC-ACTGA----TTAAT---T-GA-A-------ATGT-A--T--TGTTTTA-GCGATTGAAATTGTGGAGATTT---GTGTTA-TTCCCGCGT--ATC-AAGAGT---GT-CA---CAATTTCAAT--CCATGCACTTTCCAACAAGTTACTGTTAGGA-GATT-TATGCAAACTAACACTGTCATTACATTTTTATTTCAAACAATTTCTGATCGAATA---------CTGTTTTCCCACATTGACGTGTGTTAGAGCT-TA-AT---TGCGGATTTCTTATAACCATAAACAAGCAGAACGATGCGATTAGCCATGTTTGTT--TACAGCAAGTGACACGATGAC
gi|125320 : TTTTACGATCGAAAATGTGGAGATTT---TT---GTTATT-CCCGCATAATTCTGGACAA-T-TCGATGACCTCGCATTATC-ACTGA----TAaggt
gi|125321 : TTTCGCAATTTAAATTGGGGATATTT---GT---GTTATT-CCCGAGTAAGTCTGGTCAA-T-TCAATGACCACGCATGGTC-ACTGA----TA
gi|125322 : TTTTGCGATTTAAATTGGTGATATTT---GT---GTTATT-CCCGCATAAATCTGGTCAA-T-TCAATGACAACGCGTGGTC-ACTGA----TA
gi|125323 : TTTTGCGATTTAAATTGGGGATATTT---GT---GTTATT-CCCGTGTAAGTCTGGTCAA-T-TCTATGACCTTGCATGGTC-ACTGA----CA
gi|125324 : TTTTGCGATTTAAATTGGTGATATTT---GT---GTAATT-CCCGCGTAAGTCTGGTCAA-T-TCAATGACGTCGCGTGGTC-ACTGA----TA
gi|125325 : -GCGATTGAAAATGTGGATATTT---GTGTTA-TTCCCGCGT--A
gi|125326 : GATTGAAAATGTGGAGATTT---TT---GTTATT-CCCACGTAAGTCTGGACAA-T-TTGATGACCTCGCGTTATC-ACTGA----TA
gi|125327 : CGCGTGAGTTTGGAAAA-T-TCCATTACCTCGCGTGATC-ACTG
gi|125328 : CTGCACAAATATTAACAACCT------GTC-ATTGAAAAATAAAT---T-GA-A-------AC---A--T--TGTTTTA-GCGATTGGAAATGGGGAAATTT---TTGTTA-TTCCCGCGT--A---A-GCAT---G--GA---CAATT
gi|125328 : aatgTTTTAGCGATTGGAAATGGGGAAATTT---TT---GTTATT-CCCGCGTAAGCATGGACAA-T-T
gi|125329 : aatgctgcacaaatattaacaacctgtcattgaaaaataaattgaaacattgTGGTC-CTTGA----AAAAT------A-A-------ATATTA--T--TGTTTTT-GTGATCAAAAATGAGGAGATTT---TTGTTA-TTCCCTCGT--A
gi|125330 : TGGTCTACTGG----AAAAT---T-AA-ATATATAAATAT-AAAT--TGTTTTT-ATGATTGAAAATGTGGAGATTT---TTGTTATTTCCCGCGC--A
gi|125331 : GGTC-ATTGAAAAATAAAT---T-GG-A-------ATGT-G--T--TTCTTTT-GCGATTTAAATTGGTGATATTT---GTGTTA-TTCCCGCATAAATC-T-G------GT-CAATTCAATGACAAC--GCGTG-------------GTCACTGATATGACACTT-TGTACAAATAGACGCTATTTTTATA
gi|125331 : TTTTGCGATTTAAATTGGTGATATTT---GT---GTTATT-CCCGCATAAATCTGGTCAA-T-TCAATGACAACGCGTGGTC-ACTGA----TA
gi|125332 : ggtcattgaaaaataaattggaatgtgtttcTC-ATTGAAAAATAAAT---T-GA-A-------ACCT-A--T--TGTTTTT-GCAATTGAAATTG-GGAAATTT---TTGTTA-TTCTTGCGT--Atgacactttgtacaaatagacgctatttttata
gi|125333 : TGA----AAAAT------A-A-------ATAT-G--T--TGTTTTT-GCGATTGAAAATGGGGAGATTT---TTGTTG-TTCCCGCAT--A------AGT---CTGGA---CAA-TTCAAT--
gi|125333 : TTTTTGCGATTGAAAATGGGGAGATTT---TT---GTTGTT-CCCGCATAAGTCTGGACAA-T-TCAAT
gi|125334 : tgaaaaataaatatgttgTGA----AAAAT------A-A-------ATAT-A--TCTTGTTTTT-GCGATTGAAAA--TGGGTATTT---TTGTTA-TTCCCACGT--A
gi|125334 : TTTTTGCGATTGAAAATGGG--TATTT---TT---GTTATT-CCCACGTA
gi|125335 : tgaaaaataaatatatcttgGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTT---------------GTGGAGATTT---GTGTTG-TTCCCGCGT--ATC-A-GTGT---GT-CA---CAATTTCAAT--CCAAGCACTTTTCAACAAGTTACTGTTAGGA-AATT-TACGCAAACTATCACTGTTTATACATTTTGATTTCCTACAATTTCTGATCGAACA---------CTGTTTTACCATATTGGCGTGTTAAAGCGCTATATATTCATACGGATCTCTAATAATCATAAACAAGCAGAGCGATGCGATCAGCCATGTTTGTTTGTACAGCG-ATGACACGA
gi|125336 : A----TAAATGTATAGA-T-------ATAT-A--T--TGTTTTT-GCAATTGAAAGTGGGGAGATTTTTATTGTTA-TTCCCGCGT--Acaggt
gi|125336 : TTTTTGCAATTGAAAGTGGGGAGATTTTTATT---GTTATT-CCCGCGTA
gi|125337 : ataaatgtatagatatatattgA----TAAATATAT-AA-T-------ATAT-A--T--TGTTTTTTGAGATTGAAAATGAGGAGAATT---TTGTTA-TTCCCGCGT--A
gi|125337 : TTTTTGAGATTGAAAATGAGGAGAATT---TT---GTTATT-CCCGCGTA
gi|125338 : ataaatatataatatatattgtA----TAAATATAT-AA-AT------ATAT-A--T--TGTTTTA-GCCAATGAAAATGGGGAGATTT---TTATTA-TTCCTACGT--A
gi|125338 : TTTTAGCCAATGAAAATGGGGAGATTT---TT---ATTATT-CCTACGTA
gi|125339 : ataaatatataaatatatattgA----TAAATA--T-AT-A-------ATAT-A--T---ATTTT--GCGGTTGAAAATGGGGAGATTT---TAATTA-TTCCCGCGT--A
gi|125339 : TTTTGCGGTTGAAAATGGGGAGATTT---TA---ATTATT-CCCGCGTA
gi|125340 : ataaatatataatatataTTTTTGCGATTGAAAATGGGGAGATTT---TT---GTTAGT-TCTGCGTAAATCTTGACAA-T-TCAATGACCTCGTGTGATC-ACTGA----TCAAC---T-GA-A-------ATGT-A--T--TGTT
gi|125341 : ataaatgtataatatatgttgA----TAAATATAT-AA-T-------ATAT-A--T--TGTTTTT-ACGGTTAAAAATGGGGAGATTT----TGTTA-TTCCTGCGT--A
gi|125342 : A----TAAAT---T-GA-A-------ATGT-G--T--TGCTTTT-GCGATTTAAATTGGGGATATTT---GTGTTA-TTCCCGTGT--A------AGTCTGGT------CAAT-----T--CTATG-ACCTTGCA--TGGTCACTGACATGA-CACTATATACAAATAGATGCTGTTTTTATA
gi|125342 : TTTTGCGATTTAAATTGGGGATATTT---GT---GTTATT-CCCGTGTAAGTCTGGTCAA-T-TCTATGACCTTGCATGGTC-ACTGA----CAaaaactttaaaatttagtaaccatatgatatcttgcacatatttactttgtgaactgttacgctacacgaatataaacttacgatctctacaaaaataaataggcaaaccg
gi|125343 : ataaattgaaatgtgttgcA----TAAAT---T-GA-A-------ATGT-G--T--TTCTTTT-GCGATTTAAATTGGTGATATTT---GTGTAA-TTCCCGCGT--Atgacactatatacaaatagatgctgtttttataaaaactttaaaatttagtaaccatatgatatcttgcacatatttactttgtgaactgttacgctacacgaatataaacttacgatctctacaaaaataaataggcaaaccg
gi|125344 : ----TAAAT---T-GGTG-------ATAT----T--TGCTTTC-GCAATTTAAATTGGGGATATTT---GTGTTA-TTCCCGAGT--A------AGTCTGGT-CA----A--TTCAATGACCACGCAT---------GGTCACTGATATGACACTT-TATACAAATAGACGCTATTTTCATA
gi|125344 : TTTCGCAATTTAAATTGGGGATATTT---GT---GTTATT-CCCGAGTAAGTCTGGTCAA-T-TCAATGACCACGCATGGTC-ACTGA----TA
gi|125345 : taaattggtgatatttgcAAT---T-G-----------TAT-A--T--TGTTTTT-GCGATTGAAAATGGGGAGATTT---CTGTTA-TTCCCtgacactttatacaaatagacgctattttcata
gi|125345 : TTTTTGCGATTGAAAATGGGGAGATTT---CT---GTTATT-CCC
gi|125346 : aattgtatattgGT---GT-CA---CAATTCCAAT--CCATGCATTTTTCAACAAGTTACTGTTAGGA-AATT-TATGCAAACTAACACTGTCTTTACATGTTGATTTCCTACAATTTCTGAACGAACA---------CTGTTTTCCCATATTGGCGTGTGTAAGCGCT-TA-AT---TGCGGATTTTTAATAATCATAAACATGCAGAGCGATGCGATCAGCCATGATTGTT--TACATTGAATGACACGATGAC
gi|125347 : TTTT--ACAAGTTACTGTTAGGA-GATT-TATGCAAATTAACACTGTCATTACATTTTTATTGCGTACAATTTCTGATCGAACA---------CTTTCTTACCATATTGGCGTGTGTAAGCGCT-TA-AT---TGCGGACTTCTAATAACCATAAACAAGCAGAACGATATGATCGATCATCCTTGTT--TACAGCGAATGACAaggt
gi|125348 : ACAAGTTACTGTTAGGA-GATT-TATGCAAACTAACACTGTCATTACATTTTTATTTCCTACAATTTCTTATCGAACA---------CTGTTTTCCCATATTGGCGTGTGTAAGCGCT-TA-AT---TGCGGATTTCTAATAACCATAAACAAACAGAGCGATGCGATGGGCCATGTTTGTT--TACAGCGAATGACAGGTTGGC
blockSeqs : TTA . T A A T AAAA GTA A T TATATAA T AA CT TT T TTAT T AA TCAA CTG G ATT GA C A A . A T TCA TG
blockSeqs : . . . . . . AAAA ATA . . T . . . A T G . . TCAA CTG G . . C . A . . . . .
blockSeqs : . . . . . . AAAA ATA . . . . . . A T G . . TCA . . . . . . G . . . . .
blockSeqs : . . . . . . . ATA . . . . . . C T G . . TCA . . . . . . G . . . . .
blockSeqs : . . . . . . . A . . . . . . C T G . . TCA . . . . . . G . . . . .
blockSeqs : . . . . . . . . . . . . . . A T G . . TCA . . . . . . T . . . . .
blockSeqs : . . . . . . . . . . . . . . A T G . . TCA . . . . . . G . . . . .
blockSeqs : . . . . . . . . . . . . . . T T G . . TCA . . . . . . G . . . . .
blockSeqs : . . . . . . . . . . . . . . T T G . . TCT . . . . . . T . . . . .
blockSeqs : . . . . . . . . . . . . . . A T G . . TCA . . . . . . T . . . . .
blockSeqs : . . . . . . . . . . . . . . A T G . . A . . . . . .
blockSeqs : . . . . . . . . . . . . . . A T T . . A . . . . . .
blockSeqs : . . . . . . . . . . . . . . A T T . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . A T T . . . . . . .
blockSeqs : . . . . . . . . . . . . . . A T G . . . . . .
blockSeqs : . . . . . . . . . . . . . . A G G . . . . . .
blockSeqs : . . . . . . . . . . . . . . T A T . . . . .
blockSeqs : . . . . . . . . . . . . . . T T T . .
blockSeqs : . . . . . . . . . . . . . . T G T . .
blockSeqs : . . . . . . . . . . . . . . T G G . .
blockSeqs : . . . . . . . . . . . . . . T T T . .
blockSeqs : . . . . . . . . . . . . . . T T T . .
blockSeqs : . . . . . . . . . . . . . . T G T . .
blockSeqs : . . . . . . . . . . . . . . A A G . .
blockSeqs : . . . . . . . . . . . . . . T G T . .
blockSeqs : . . . . . . . . . . . . . . T G T . .
blockSeqs : . . . . . . . . . . . . . . T G T . .
blockSeqs : . . . . . . . . . . . . C G G . .
blockSeqs : . . . . . T G G . .
blockSeqs : . . . . . G G . .
blockSeqs : . . . . . G C . .
blockSeqs : . . . .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqCons : *** *********
originalCons : TTTTTGCGATTGAAAATGGGGAGATTT---TT---GTTATT-CCCGCGTAAGTCTGGACAA-T-TCAATGACCTCGCGTGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTTTN-GCGATTGAAAATGTGGAGATTT---GTGTTA-TTCCCGCGT--ATC-A-GAGT---GT-CA---CAATTTCAAT--CCATGCACTTTTCAACAAGTTACTGTTAGGA-AATT-TATGCAAACTAACACTGTCTTTACATTTTGATTTCCTACAATTTCTGATCGAACA---------CTGTTTTCCCATATTGGCGTGTGTAAGCGCT-TA-AT---TACGGATCTCTAATAATCATAAACAAGCAGAGCGATGCGATCAGCCATGTTTGTT--TACAGCGAATGACACGATGAC
finalCons : TTTTTGCGATTGAAAATGGGGAGATTT---TT---GTTATT-CCCGCGTAAGTCTGGACAA-T-TCAATGACCTCGCGTGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTTTN-GCGATTGAAAATGTGGAGATTT---GTGTTA-TTCCCGCGT--ATC-A-GAGT---GT-CA---CAATTTCAAT--CCATGCACTTTTCAACAAGTTACTGTTAGGA-AATT-TATGCAAACTAACACTGTCTTTACATTTTGATTTCCTACAATTTCTGATCGAACA---------CTGTTTTCCCATATTGGCGTGTGTAAGCGCT-TA-AT---TACGGATCTCTAATAATCATAAACAAGCAGAGCGATGCGATCAGCCATGTTTGTT--TACAGCGAATGACACGATGAC
Alignments
lowQualScore : 111 11111 111111111
lowQualScore : 0 222 222 1 1 1 1 6666 111 1 1 5555555 1 11 11 33 2 4444 1 11 00000 777 4 333 33 5 2 1 444444444 3 3 666 55
lowQualScore : . ... ... . . . . .... ... . . ....... . .. .. .. . .... . .. ..... ... . ... .. . . . ......... . . ... ..
lowQualScore : 1 222 222 2 4 4 3 5555 000 4 4 9999999 4 99 99 99 1 2222 2 77 00000 888 4 999 77 7 9 2 555555555 6 6 444 00
consensus : TTTTTGCGATTGAAAATGGGGAGATTT---TT---GTTATT-CCCGCGTAAGTCTGGACAA-T-TCAATGACCTCGCGTGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTTTN-GCGATTGAAAATGTGGAGATTT---GTGTTA-TTCCCGCGT--ATC-A-GAGT---GT-CA---CAATTTCAAT--CCATGCACTTTTCAACAAGTTACTGTTAGGA-AATT-TATGCAAACTAACACTGTCTTTACATTTTGATTTCCTACAATTTCTGATCGAACA---------CTGTTTTCCCATATTGGCGTGTGTAAGCGCT-TA-AT---TACGGATCTCTAATAATCATAAACAAGCAGAGCGATGCGATCAGCCATGTTTGTT--TACAGCGAATGACACGATGAC
Reference ( family-482 ) : TTTTTGCGATTGAAAATGGGGAGATTT---TT---GTTATT-CCCGCGTAAGTCTGGACAA-T-TCAATGACCTCGCGTGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTTTN-GCGATTGAAAATGTGGAGATTT---GTGTTA-TTCCCGCGT--ATC-A-GAGT---GT-CA---CAATTTCAAT--CCATGCACTTTTCAACAAGTTACTGTTAGGA-AATT-TATGCAAACTAACACTGTCTTTACATTTTGATTTCCTACAATTTCTGATCGAACA---------CTGTTTTCCCATATTGGCGTGTGTAAGCGCT-TA-AT---TACGGATCTCTAATAATCATAAACAAGCAGAGCGATGCGATCAGCCATGTTTGTT--TACAGCGAATGACACGATGAC
gi|125302 : TTTTTGCAATTGAAAGTGGGGAGATTT---TTATTGTTATT-CCCGCGTAAATCTGGACAA-T-TCAATGACCTCGTATGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTTTA-GCAATTGAAAAGGTGGAGATTT---GTGTTA-TTCCCGCGT--ATC-A-GAGT---GT-CA---CAATTTCAAT--CCATGCACTTTTCAACAAGTTTCTGTTAGGA-AATT-AATGCAAACTAATACTGTTTTTACATTTTAATTTCCTACAATTTCTGATCGAACATTGTTTTCCCTGTTTTCCCATATTGGCGTGTGTAAGCGCT-TA-AT---TACAGATTTCAAATAATCATAAACAAGCAGAGCGATGTGATCAGCCATGTTTGTT--TACAGCGAATGACACGATGAC
gi|125303 : TTTTA-GCAATTGAAAAGGTGGAGATTT---GTGTTA-TTCCCGCGT--Aaggt
gi|125304 : TTTTTGAGATTGAAAATGAGGAGAATT---TT---GTTATT-CCCGCGTAAATCTGGACAA-T-TCAATGACCTCGCGTGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTTAA-GCGATTGAAAATGTGGATATTT---GTGTTA-TTCCCGCGT--ATC-A-GAGT---GT-CA---CAATTTCAAT--CCATGCACTTTTCAACAAGTTACTGTTAGGA-AATT-TATGCAAACTAACACTGTCTTTACATTTTAATTTCCTATAATTTCTGATCGAATA---------CTGTTTTCCCATATTGACTTGTATAAGCGCT-TA-AT---TACGAACCTCTAATAATCATAAACAAGC-GTGCGATGCGATCATCCATGTTTGTT--TACAGTGAATGACACGATGAC
gi|125305 : TTTTTGCGATTGAAAATGGGGAGATTT---CT---GTTATT-CCC---TAAATATGGACAA-T-TCAATGATCTCGCATGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTTTC-GCGATTGAAAATGTGGAGATTT---GTGTTA-TTCCAGCGT--ATC-A-GAGT---GT-CA---CAATTTCAAT--CCATGCACTTTTCAACAAGTTACTGTTAGGA-AATT-TATGCAAACTAACACTGTCTTAACATTTTAATTTTCTACAATATCTGATCGAACA---------CTGTCTTCCCATACTGGCGTGTGGAAGCGCT-TA-AT---TACGGATCTCTAATAATCATAAACAAACAGAGCGATGCCATCAGTCATGTTTGTT--TACAGGGAATGACACGATGAC
gi|125306 : TTTTC-GCGATTGAAAATGTGGAGATTT---GTGTTA-TTCCAGCGT--Aaggt
gi|125307 : TTTTAGCCAATGAAAATGGGGAGATTT---TT---ATTATT-CCTACGTAAATCTGGACAA-T-TCAATGGCATCGCGTGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTATTA-GCGATTGAAAATGTAGAGATTT---GTCTTA-TTCCCGCAT--ATC-A-GAGT---GT-CA---CAATTTCGAT--CCATGCACGTTTCAACAAATTACTGTTAGGA-AATT-TATGCAAACCAACACCGTTTTTACATTTTGATTTCCTACAACTTCTGATCAAACA---------CTGTTTTCCTATATTGGCGTGTGTAAGCCCT-TA-AT---TACGGATCTCTATTAATCATAAACAAGCAGAGCGATGCGATCAGCCATGTTTGTT--TACAGTGAATGACACGATGAC
gi|125308 : TTTTA-GCGATTGAAATTGTGGAGATTT---GTGTTA-TTCCCGCGT--Aaggt
gi|125309 : TTTTTGCGATTGAAAATGGGGAGATTT---TT---GTTAGT-TCTGCGTAAATCTTGACAA-T-TCAATGACCTCGTGTGATC-ACTGA----TCAAC---T-GA-A-------ATGT-A--T--TGTTTTT-GCGATTGAAAATGTGGAGATGT---GTGCTA-CTCCCACGT--ATC-A-GAAT---GT-CA---CAAGTTCAAT--CCATGCACTTTTCAACAAGTTGCTGTTAGGA-AATT-TATGCAAACTAACACTGTTTTTACATTTTGATTTCCCACAATTTCTGATCGAACA---------CTGTTTTCCCATATTGGCGTGCGTAAACGCT-TA-AT---TACGGATCTCTAATAATCAGAAACAAGC-GTGCGATGCGATCAGTTATGTTTGTT--TA-AGCGAATAACACGATGAC
gi|125310 : TTTTT-GCGATTGAAAATGTGGAGATGT---GTGCTA-CTCCCACGT--ATC-A-GAAT---GT-CA---CAAGTTCAAT--aggt
gi|125311 : TTTTTGTGATCAAAAATGAGGAGATTT---TT---GTTATT-CCCTCGTAAATCTGGACAA-T-TCAATGAATTCGCGTGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTTTA-GCGGTTGAAAATGTGGTGATTT---GTGTAA-TTCCCGCGT--ATC-A-GAGT---GT-CA---CAATTTCAAT--CCATGCACTTTTCAACACGTTACTCTAAGGA-AATT-TATGCAAACTAACACCGTCTTTACATTTAGATTTCCTACAATTTCTGATCAAACA---------CTGTTTTCCCATATTGGC----GTAAGCGGT-TA-AT---TACGGATCTCTCATAATCATAAACAAGCACAGCGATGCGATCAACCATGTTTGTT--TACAACGAACGACACGACGAC
gi|125312 : TTTTTACGGTTAAAAATGGGGAGATTT---T----GTTATT-CCTGCGTAAATCTGGACAA-T-TCAATGACCTCGCGTGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTTTA-GCGATTGGAATTTTGGAGATTT---GTGTTA-TTCCCGCGT--ATCAA-GAGT---GT-CA---CAATTTCAGT--CCATGCACTTTCCAACAAGaggt
gi|125313 : TTTTTGCGATTGAAAATGGGGAGATTT---TT---GTTGTT-CCCGCATAAGTCTGGACAA-T-TCAATGGTCTCGCATGATC-ACTGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTTTA-TTGATTGAAAATGTGGAGATTT---TTGTTA-TTCCCACGT--A------AGT---CTGGA---CAATTT
gi|125314 : TTTTTGCGATTGAAAATGGGTA--TTT---TT---GTTATT-CCCACGTAGGTCTGGACAA-T-TTAATGACCTCGCGTAATC-ACTGA----TAGGT---T-GA-G-------ATGT-A--T--TGTTTTA--CGATCGAAAATGTGGAGATTT---TTGTTA-TTCCCGCAT--A
gi|125315 : TTTTTGCAATTGAAA-TTGGGAAATTT---TT---GTTATT-CTTGCGTAAGTATGGACAA-T-GCAATGAATTCGCGTGATC-ATTGA----TCAAC---T-GA-A-------ATGT-A--T--TGTTTTA-GCGATTGAAAATGTGGATATTT---TTGTTA-TTCCCGCGT--A---A-GCAT---G--GA---CAATT
gi|125316 : TTTTAGCGATTGAAAATGTGGATATTT---TT---GTTATT-CCCGCGTAAGCATGGACAA-T-TCGATGACCTCGCGTGATC-ACTGA----T
gi|125317 : TTTTAGCGATTGGAAATGGGGAAATTT---TT---GTTATT-CCCGCGTAAGCATGGACAA-T-TCGATGACCTCGCATGATC-ACTGA----TA
gi|125318 : TTTTTATGATTGAAAATGTGGAGATTT---TT---GTTATTTCCCGCGCAAGTCTGGACAA-T-TCGATGACCTCGCGTGACC-
gi|125319 : TTTTGCGGTTGAAAATGGGGAGATTT---TA---ATTATT-CCCGCGTAAATCTGGACAA-T-TCAATGATCTCGCGTGATC-ACTGA----TTAAT---T-GA-A-------ATGT-A--T--TGTTTTA-GCGATTGAAATTGTGGAGATTT---GTGTTA-TTCCCGCGT--ATC-AAGAGT---GT-CA---CAATTTCAAT--CCATGCACTTTCCAACAAGTTACTGTTAGGA-GATT-TATGCAAACTAACACTGTCATTACATTTTTATTTCAAACAATTTCTGATCGAATA---------CTGTTTTCCCACATTGACGTGTGTTAGAGCT-TA-AT---TGCGGATTTCTTATAACCATAAACAAGCAGAACGATGCGATTAGCCATGTTTGTT--TACAGCAAGTGACACGATGAC
gi|125320 : TTTTACGATCGAAAATGTGGAGATTT---TT---GTTATT-CCCGCATAATTCTGGACAA-T-TCGATGACCTCGCATTATC-ACTGA----TAaggt
gi|125321 : TTTCGCAATTTAAATTGGGGATATTT---GT---GTTATT-CCCGAGTAAGTCTGGTCAA-T-TCAATGACCACGCATGGTC-ACTGA----TA
gi|125322 : TTTTGCGATTTAAATTGGTGATATTT---GT---GTTATT-CCCGCATAAATCTGGTCAA-T-TCAATGACAACGCGTGGTC-ACTGA----TA
gi|125323 : TTTTGCGATTTAAATTGGGGATATTT---GT---GTTATT-CCCGTGTAAGTCTGGTCAA-T-TCTATGACCTTGCATGGTC-ACTGA----CA
gi|125324 : TTTTGCGATTTAAATTGGTGATATTT---GT---GTAATT-CCCGCGTAAGTCTGGTCAA-T-TCAATGACGTCGCGTGGTC-ACTGA----TA
gi|125325 : -GCGATTGAAAATGTGGATATTT---GTGTTA-TTCCCGCGT--A
gi|125326 : GATTGAAAATGTGGAGATTT---TT---GTTATT-CCCACGTAAGTCTGGACAA-T-TTGATGACCTCGCGTTATC-ACTGA----TA
gi|125327 : CGCGTGAGTTTGGAAAA-T-TCCATTACCTCGCGTGATC-ACTG
gi|125328 : CTGCACAAATATTAACAACCT------GTC-ATTGAAAAATAAAT---T-GA-A-------AC---A--T--TGTTTTA-GCGATTGGAAATGGGGAAATTT---TTGTTA-TTCCCGCGT--A---A-GCAT---G--GA---CAATT
gi|125328 : aatgTTTTAGCGATTGGAAATGGGGAAATTT---TT---GTTATT-CCCGCGTAAGCATGGACAA-T-T
gi|125329 : aatgctgcacaaatattaacaacctgtcattgaaaaataaattgaaacattgTGGTC-CTTGA----AAAAT------A-A-------ATATTA--T--TGTTTTT-GTGATCAAAAATGAGGAGATTT---TTGTTA-TTCCCTCGT--A
gi|125330 : TGGTCTACTGG----AAAAT---T-AA-ATATATAAATAT-AAAT--TGTTTTT-ATGATTGAAAATGTGGAGATTT---TTGTTATTTCCCGCGC--A
gi|125331 : GGTC-ATTGAAAAATAAAT---T-GG-A-------ATGT-G--T--TTCTTTT-GCGATTTAAATTGGTGATATTT---GTGTTA-TTCCCGCATAAATC-T-G------GT-CAATTCAATGACAAC--GCGTG-------------GTCACTGATATGACACTT-TGTACAAATAGACGCTATTTTTATA
gi|125331 : TTTTGCGATTTAAATTGGTGATATTT---GT---GTTATT-CCCGCATAAATCTGGTCAA-T-TCAATGACAACGCGTGGTC-ACTGA----TA
gi|125332 : ggtcattgaaaaataaattggaatgtgtttcTC-ATTGAAAAATAAAT---T-GA-A-------ACCT-A--T--TGTTTTT-GCAATTGAAATTG-GGAAATTT---TTGTTA-TTCTTGCGT--Atgacactttgtacaaatagacgctatttttata
gi|125333 : TGA----AAAAT------A-A-------ATAT-G--T--TGTTTTT-GCGATTGAAAATGGGGAGATTT---TTGTTG-TTCCCGCAT--A------AGT---CTGGA---CAA-TTCAAT--
gi|125333 : TTTTTGCGATTGAAAATGGGGAGATTT---TT---GTTGTT-CCCGCATAAGTCTGGACAA-T-TCAAT
gi|125334 : tgaaaaataaatatgttgTGA----AAAAT------A-A-------ATAT-A--TCTTGTTTTT-GCGATTGAAAA--TGGGTATTT---TTGTTA-TTCCCACGT--A
gi|125334 : TTTTTGCGATTGAAAATGGG--TATTT---TT---GTTATT-CCCACGTA
gi|125335 : tgaaaaataaatatatcttgGA----TAAAT---T-GA-A-------ATGT-A--T--TGTTT---------------GTGGAGATTT---GTGTTG-TTCCCGCGT--ATC-A-GTGT---GT-CA---CAATTTCAAT--CCAAGCACTTTTCAACAAGTTACTGTTAGGA-AATT-TACGCAAACTATCACTGTTTATACATTTTGATTTCCTACAATTTCTGATCGAACA---------CTGTTTTACCATATTGGCGTGTTAAAGCGCTATATATTCATACGGATCTCTAATAATCATAAACAAGCAGAGCGATGCGATCAGCCATGTTTGTTTGTACAGCG-ATGACACGA
gi|125336 : A----TAAATGTATAGA-T-------ATAT-A--T--TGTTTTT-GCAATTGAAAGTGGGGAGATTTTTATTGTTA-TTCCCGCGT--Acaggt
gi|125336 : TTTTTGCAATTGAAAGTGGGGAGATTTTTATT---GTTATT-CCCGCGTA
gi|125337 : ataaatgtatagatatatattgA----TAAATATAT-AA-T-------ATAT-A--T--TGTTTTTTGAGATTGAAAATGAGGAGAATT---TTGTTA-TTCCCGCGT--A
gi|125337 : TTTTTGAGATTGAAAATGAGGAGAATT---TT---GTTATT-CCCGCGTA
gi|125338 : ataaatatataatatatattgtA----TAAATATAT-AA-AT------ATAT-A--T--TGTTTTA-GCCAATGAAAATGGGGAGATTT---TTATTA-TTCCTACGT--A
gi|125338 : TTTTAGCCAATGAAAATGGGGAGATTT---TT---ATTATT-CCTACGTA
gi|125339 : ataaatatataaatatatattgA----TAAATA--T-AT-A-------ATAT-A--T---ATTTT--GCGGTTGAAAATGGGGAGATTT---TAATTA-TTCCCGCGT--A
gi|125339 : TTTTGCGGTTGAAAATGGGGAGATTT---TA---ATTATT-CCCGCGTA
gi|125340 : ataaatatataatatataTTTTTGCGATTGAAAATGGGGAGATTT---TT---GTTAGT-TCTGCGTAAATCTTGACAA-T-TCAATGACCTCGTGTGATC-ACTGA----TCAAC---T-GA-A-------ATGT-A--T--TGTT
gi|125341 : ataaatgtataatatatgttgA----TAAATATAT-AA-T-------ATAT-A--T--TGTTTTT-ACGGTTAAAAATGGGGAGATTT----TGTTA-TTCCTGCGT--A
gi|125342 : A----TAAAT---T-GA-A-------ATGT-G--T--TGCTTTT-GCGATTTAAATTGGGGATATTT---GTGTTA-TTCCCGTGT--A------AGTCTGGT------CAAT-----T--CTATG-ACCTTGCA--TGGTCACTGACATGA-CACTATATACAAATAGATGCTGTTTTTATA
gi|125342 : TTTTGCGATTTAAATTGGGGATATTT---GT---GTTATT-CCCGTGTAAGTCTGGTCAA-T-TCTATGACCTTGCATGGTC-ACTGA----CAaaaactttaaaatttagtaaccatatgatatcttgcacatatttactttgtgaactgttacgctacacgaatataaacttacgatctctacaaaaataaataggcaaaccg
gi|125343 : ataaattgaaatgtgttgcA----TAAAT---T-GA-A-------ATGT-G--T--TTCTTTT-GCGATTTAAATTGGTGATATTT---GTGTAA-TTCCCGCGT--Atgacactatatacaaatagatgctgtttttataaaaactttaaaatttagtaaccatatgatatcttgcacatatttactttgtgaactgttacgctacacgaatataaacttacgatctctacaaaaataaataggcaaaccg
gi|125344 : ----TAAAT---T-GGTG-------ATAT----T--TGCTTTC-GCAATTTAAATTGGGGATATTT---GTGTTA-TTCCCGAGT--A------AGTCTGGT-CA----A--TTCAATGACCACGCAT---------GGTCACTGATATGACACTT-TATACAAATAGACGCTATTTTCATA
gi|125344 : TTTCGCAATTTAAATTGGGGATATTT---GT---GTTATT-CCCGAGTAAGTCTGGTCAA-T-TCAATGACCACGCATGGTC-ACTGA----TA
gi|125345 : taaattggtgatatttgcAAT---T-G-----------TAT-A--T--TGTTTTT-GCGATTGAAAATGGGGAGATTT---CTGTTA-TTCCCtgacactttatacaaatagacgctattttcata
gi|125345 : TTTTTGCGATTGAAAATGGGGAGATTT---CT---GTTATT-CCC
gi|125346 : aattgtatattgGT---GT-CA---CAATTCCAAT--CCATGCATTTTTCAACAAGTTACTGTTAGGA-AATT-TATGCAAACTAACACTGTCTTTACATGTTGATTTCCTACAATTTCTGAACGAACA---------CTGTTTTCCCATATTGGCGTGTGTAAGCGCT-TA-AT---TGCGGATTTTTAATAATCATAAACATGCAGAGCGATGCGATCAGCCATGATTGTT--TACATTGAATGACACGATGAC
gi|125347 : TTTT--ACAAGTTACTGTTAGGA-GATT-TATGCAAATTAACACTGTCATTACATTTTTATTGCGTACAATTTCTGATCGAACA---------CTTTCTTACCATATTGGCGTGTGTAAGCGCT-TA-AT---TGCGGACTTCTAATAACCATAAACAAGCAGAACGATATGATCGATCATCCTTGTT--TACAGCGAATGACAaggt
gi|125348 : ACAAGTTACTGTTAGGA-GATT-TATGCAAACTAACACTGTCATTACATTTTTATTTCCTACAATTTCTTATCGAACA---------CTGTTTTCCCATATTGGCGTGTGTAAGCGCT-TA-AT---TGCGGATTTCTAATAACCATAAACAAACAGAGCGATGCGATGGGCCATGTTTGTT--TACAGCGAATGACAGGTTGGC