lowQualScore : 1 66 7 11 11 1 0 1111 0 6 2
lowQualScore : . .. . .. .. . . .... . . .
lowQualScore : 0 66 0 22 11 5 8 8888 9 3 0
consensus : TAA-GGACGATTT-CTATA--GTTTTTCATGCGCACC--AATTC-CG----CGCACAAAGGGA-AGCAACTTTGTCGAG
Reference ( gi|8872 ) : TAA-GGACGATTG-CTGTA--GTTTTTCATGCGCACC--AACTC-CG----CGCACAAAGGGA-AACAATTTTGTCGAG
gi|8837 : TAA-GGACGTTTG-CTATA--GTTTTTTATGCACCCC--AACTC-CG----CGCACAAAAGGA-AGCAATTTTGTCAAG
gi|8845 : tTAA-GGACGATTG-CTTTA--GTTTTACATGCACACA--AACTC-CG----CGCACTAAGGGA-AGCAATTCTGTCGAGac
gi|8844 : tTAA-AGACGATTT-CCATA--GTTTTTCATGTGCACC--AACTC-CG----CGCACCAAGGGA-AGCAATTTTGTCAAa
gi|8840 : tTAA-AGACGATTG-CTATA--GTTTTTCATGCGCACC--AACTC-TA----CGCAAAAAGGGT-AGCATTTTTGTCGAGcac
gi|8841 : tTAA-GGACGATTG-CTATA--GAATTTCATGCGCACC--AACTC-CG----CGAAAAAAGGGA-AGCAATTTTGTCCAGac
gi|8843 : tTAA-GGAGGATGG-CTATA--GTTTTTCATGCGTACC--AACTC-TG----CACACAGAGGGA-AGCAATTTTGTCCAGac
gi|8854 : tTAA-TGACAATTG-CT--A--GTTTTTCATGCACACC--AACTC-CA----CGCACAAAGGGA-GACAA-TTTGTCGAGac
gi|8836 : tTAA-GGACGATTG-CTATA--GTTTT-CATGCGCACC--ATTTC-CG----TACACAAAGGGA-AGCAA-TTTGTCGA
gi|8847 : tTAA-GGACAACAG-CTATA--GTTTTTCATGCGCACC--AAATC-TG----CTTACAAAGGGA-AGCAATTTTGTAGAGaac
gi|8848 : tTAA-AAACGTTTT-CTATA--GTTTTTCATGCCCACC--AATTC-CG----TGCACAAAGGGA-AGAAATTTTGTCGAGac
gi|8838 : tTAA-GGACGATTG-CTATA--GTTTTTCATGCGCTTC--AGTTC-CG----CACACAAAGGGA-AGCAACTTCG
gi|8849 : tTAA-GGACGACTG-CTATC--GTTTTTCATGCACACA--AAAGC-CA----CGCACAAAGGGA-CGCAATTTTGTCGAGaga
gi|8835 : tTAA-GAACGTTTT-TTATA--GTTTTCCATGCGCACC--AATTC-CA----CGCACAAAGGGC-AGCAACTTTGTCGAGac
gi|8842 : tTGA-GGACGATTT-CTAGA--GTTTTTCATGCGCAAT--AAGTC-CG----CGCACAAAGGAA-AGCGACTTTGTCGAGac
gi|8839 : tTAA-GGACGAATC-CTATA--TTTTTTCATGTGCACC--AGTTC-CG----CGCACAAAGAGA-AGCATCTTTGTCGAGac
gi|8873 : tTAA-GGACGATTG-CTATA--GTTTTCCATGCAC-----------CG----CGCACAAAGGGA-AGAAATTTTGTCGAGac
gi|8856 : TAA-AGACGATTT-CTAAA--GTTTGTCATGCGAACA--AACTC-CG----AGCACAAAAGGA-AGCAATTTTATCGAGac
gi|8850 : tTAC-GGGCGTTTT-CTATA--GTTTTTCATGCGCACT--AATTC-TG----CACATAAAGAGA-AGCAATTTTGTTGAGac
gi|8852 : tTAA-AAACGATTAACTATA--GTTTTCTATGCATACC--AACTC-CG----CGCACAAAGGAA-AGCAACTTTATCCAGac
gi|8859 : tTAA-GGAAGATTG-TTATATCATTTTTCATGCGCACCCGAACTC-CA----CGCTCAAAAGGA-AGCACTTCTTTCGAGa
gi|8874 : tTAATGGACGATTG-CTACA--GGTTTTCACGTTCACC--TGCTC-CG----CGCACAGAGGAA-AGCAATTTTGac
gi|8857 : TAA-AGACGATTT-CTAGA--AAGTTTCATTCGTACC--AACTC-CG----CGCATAAAGGGA-AGCAACTATGTTGAG
gi|8865 : tTAA-GGACGATTG-CTTTA--GTTTTTGATGCGCACC--AACTC-CA----TGCAC-------------TTTTGTCGAGac
gi|8858 : tTAA-AGACGATTT-TTATG--GTTTTTCATGCACACC--AATAC-TG----CGCACAATGGGA-AGCAACCTTac
gi|8861 : tTAA-GGAAGCTTT-CTATA--GTTTTTCATGCGCACC--AATTC-CT----CACAGAAAGGGG-AGCAA
gi|8860 : tTAA-GGAAGATTT-CTGGA--GTTTTTCATGCGCACC--ACTTC-CT----AACACAACTGAT-AGCAACTTTGTCGAG
gi|8863 : tTAA-GAACGTTTT-CTATA--GATTTGCATGAAAACC--AATTC-CG----CGCACTAAGGGA-AGC---TTTGTCGAGac
gi|8862 : tTAA-GGGCTATT--CTATA--GTTGTGCATGTGCTTC--AATGC-TG----CGCACAAAGGGA-TTCAACTTTGTCGAGa
gi|8867 : tTAT-GGACGTTTT-CTATA--GTTTTTCATGCGCTCC--AATTC-TG----CGCACAAac
gi|8866 : tTAT-GGACGTTTT-CTATA--GTTTTTCATGCGCTCC--AATTC-TG----CGCACAAgaag
gi|8871 : tTAA-GGATGATTG-CTATA--GGTTTCCACGCACA-C--A----------------AAAGGGA-AACAATTTTGTgaag
gi|8868 : tTAA-GAA-AATTC-CAACA--GTTTGTCATGCTCACC--AGTTC-CA----TACTCGAAGGGA-AGCAACTTTGTCCAGgcagac
gi|8869 : tTAA-AGACTATTT-CTATA--TAGTTGCATGCGCATC--ATTTC-CG----CGCACATAGGGA-AGTAAC
gi|8870 : tTAA-AGACGATTT-CTCAA--GTTTTTCATGTGAACC--AATTC-------CACAAAAATGGT-AGTACCTTTGT
gi|8875 : tTAA-CGACGATTT-CTATA--GATTTCCATGCGCACT--AATTCATGAAATAGCACAGGGGGCTAGCAAATCTGTCatagac
gi|8855 : AA-GGACAACTG-CTATA--TTTTGTGATGTGCTCC--AACTC-TG----CGCATAAAGGGA-AGCAATTTTGTCGAG
gi|8877 : tcAA-AGACGGTTT-CTGTA--GTTTT-CATGCGCACC--AACTC-TG----CGCACAAAGATA-AGCAACTCTATTGAGac
gi|8876 : AA-AGGCAATTT-CTACA--GTTTTTCATGCGTACC--AATTC-TA----TACACATAGAGA-AGCAACTTTGTCGA
gi|8846 : A-GGACAATTG-CTTTT--GTTCTTCATGAGCACC--AACTC-TG----CGCACAAAGGGA-AGCAATTTTGTCGAG
gi|8851 : ttcA-GGACGTTTT-TTATA--GCTTTTCATGCGCTCC--AATTC-TG----CGCATAAAGTGA-AGCAACTTTGTCGAac
gi|8878 : ttcGACGACTT-CTATA--GTTTTTCATGCGCATC--AATTC-CG----CGCACAAAGGGA-AGCAACTCTGTCGAtac
gi|8853 : GACGATTT-CTACA--GTTTTTCATGCGAATC--AATTC-CG----CGAACAAAGAGA-ATCAACTCTGTCGAG
gi|8879 : ttacaGACATTTT-CTATA--GTTTTTCATATGCACC--AATTC-CA----CCCATAAAGGGA-AGCAATTTTGTTGAG
gi|8880 : GACGATTT-CTTTA--GTGTTATATGCGCATC--AATAC-CG----CACACAAAGGGA-AGCAACTTTGCCGAa
gi|8881 : ATGATTT-GTATA--GATTTTCATGTGCACC--AATCC-CG----CACAGAAAGGGA-AGCAACTGTGTCAAG
gi|8882 : GATTG-CTATA--GTATTTCATGCGCACT--AACTC-CG----CTCATAAAAGGA-ATCAATTTTGTCAAGa
gi|8864 : GATTT-CTAGA--GTTTT-CATATGCATC--AAGTT-TG----TGCACAAAGGGA-AGCAACTTTGTTGAGac
gi|8883 : ttaaataaCATGCGCCCT--AATTC-TG----CGCACAAAGGGA-AGTAA-TTTGTCGAGac
Alignments
lowQualScore : 1 33 11 11 0 1111 0 1
lowQualScore : . .. .. .. . .... . .
lowQualScore : 0 55 11 11 8 7777 8 0
consensus : TAA-GGACGATTT-CTATA--GTTTTTCATGCGCACC--AACTC-CG----CGCACAAAGGGA-AGCAACTTTGTCGAG
Reference ( family-471 ) : TAA-GGACGATTT-CTATA--GTTTTTCATGCGCACC--AATTC-CG----CGCACAAAGGGA-AGCAACTTTGTCGAG
gi|8835 : TAA-GAACGTTTT-TTATA--GTTTTCCATGCGCACC--AATTC-CA----CGCACAAAGGGC-AGCAACTTTGTCGAG
gi|8836 : tTAA-GGACGATTG-CTATA--GTTTT-CATGCGCACC--ATTTC-CG----TACACAAAGGGA-AGCAA-TTTGTCGAac
gi|8837 : tTAA-GGACGTTTG-CTATA--GTTTTTTATGCACCCC--AACTC-CG----CGCACAAAAGGA-AGCAATTTTGTCAAGaac
gi|8838 : tTAA-GGACGATTG-CTATA--GTTTTTCATGCGCTTC--AGTTC-CG----CACACAAAGGGA-AGCAACTTCGac
gi|8839 : tTAA-GGACGAATC-CTATA--TTTTTTCATGTGCACC--AGTTC-CG----CGCACAAAGAGA-AGCATCTTTGTCGAGaga
gi|8840 : tTAA-AGACGATTG-CTATA--GTTTTTCATGCGCACC--AACTC-TA----CGCAAAAAGGGT-AGCATTTTTGTCGAGac
gi|8841 : tTAA-GGACGATTG-CTATA--GAATTTCATGCGCACC--AACTC-CG----CGAAAAAAGGGA-AGCAATTTTGTCCAGac
gi|8842 : tTGA-GGACGATTT-CTAGA--GTTTTTCATGCGCAAT--AAGTC-CG----CGCACAAAGGAA-AGCGACTTTGTCGAGac
gi|8843 : tTAA-GGAGGATGG-CTATA--GTTTTTCATGCGTACC--AACTC-TG----CACACAGAGGGA-AGCAATTTTGTCCAGac
gi|8844 : tTAA-AGACGATTT-CCATA--GTTTTTCATGTGCACC--AACTC-CG----CGCACCAAGGGA-AGCAATTTTGTCAAac
gi|8845 : tTAA-GGACGATTG-CTTTA--GTTTTACATGCACACA--AACTC-CG----CGCACTAAGGGA-AGCAATTCTGTCGAGcac
gi|8846 : tA-GGACAATTG-CTTTT--GTTCTTCATGAGCACC--AACTC-TG----CGCACAAAGGGA-AGCAATTTTGTCGAGa
gi|8847 : ttcTAA-GGACAACAG-CTATA--GTTTTTCATGCGCACC--AAATC-TG----CTTACAAAGGGA-AGCAATTTTGTAGAGac
gi|8848 : tTAA-AAACGTTTT-CTATA--GTTTTTCATGCCCACC--AATTC-CG----TGCACAAAGGGA-AGAAATTTTGTCGAGac
gi|8849 : tTAA-GGACGACTG-CTATC--GTTTTTCATGCACACA--AAAGC-CA----CGCACAAAGGGA-CGCAATTTTGTCGAG
gi|8850 : tTAC-GGGCGTTTT-CTATA--GTTTTTCATGCGCACT--AATTC-TG----CACATAAAGAGA-AGCAATTTTGTTGAGac
gi|8851 : tA-GGACGTTTT-TTATA--GCTTTTCATGCGCTCC--AATTC-TG----CGCATAAAGTGA-AGCAACTTTGTCGAac
gi|8852 : ttcTAA-AAACGATTAACTATA--GTTTTCTATGCATACC--AACTC-CG----CGCACAAAGGAA-AGCAACTTTATCCAGtac
gi|8853 : tGACGATTT-CTACA--GTTTTTCATGCGAATC--AATTC-CG----CGAACAAAGAGA-ATCAACTCTGTCGAGa
gi|8854 : ttacaTAA-TGACAATTG-CTA----GTTTTTCATGCACACC--AACTC-CA----CGCACAAAGGGA-GACAA-TTTGTCGAG
gi|8855 : tAA-GGACAACTG-CTATA--TTTTGTGATGTGCTCC--AACTC-TG----CGCATAAAGGGA-AGCAATTTTGTCGAG
gi|8856 : tcTAA-AGACGATTT-CTAAA--GTTTGTCATGCGAACA--AACTC-CG----AGCACAAAAGGA-AGCAATTTTATCGAGac
gi|8857 : tTAA-AGACGATTT-CTAGA--AAGTTTCATTCGTACC--AACTC-CG----CGCATAAAGGGA-AGCAACTATGTTGAGac
gi|8858 : tTAA-AGACGATTT-TTATG--GTTTTTCATGCACACC--AATAC-TG----CGCACAATGGGA-AGCAACCTTac
gi|8859 : tTAA-GGAAGATTG-TTATATCATTTTTCATGCGCACCCGAACTC-CA----CGCTCAAAAGGA-AGCACTTCTTTCGAG
gi|8860 : tTAA-GGAAGATTT-CTGGA--GTTTTTCATGCGCACC--ACTTC-CT----AACACAACTGAT-AGCAACTTTGTCGAGac
gi|8861 : tTAA-GGAAGCTTT-CTATA--GTTTTTCATGCGCACC--AATTC-CT----CACAGAAAGGGG-AGCAAac
gi|8862 : tTAA-GGGCTATT--CTATA--GTTGTGCATGTGCTTC--AATGC-TG----CGCACAAAGGGA-TTCAACTTTGTCGAG
gi|8863 : tTAA-GAACGTTTT-CTATA--GATTTGCATGAAAACC--AATTC-CG----CGCACTAAGGGA-AG---CTTTGTCGAGac
gi|8864 : tGATTT-CTAGA--GTTTT-CATATGCATC--AAGTT-TG----TGCACAAAGGGA-AGCAACTTTGTTGAGa
gi|8865 : ttaaataaTAA-GGACGATTG-CTTTA--GTTTTTGATGCGCACC--AACTC-CA----TGCACac
gi|8866 : tTAT-GGACGTTTT-CTATA--GTTTTTCATGCGCTCC--AATTC-TG----CGCACAA---GA-AGttttgtcgagac
gi|8867 : tTAT-GGACGTTTT-CTATA--GTTTTTCATGCGCTCC--AATTC-TG----CGCACAA---GA-AG
gi|8868 : tTAA-GAA-AATTC-CAACA--GTTTGTCATGCTCACC--AGTTC-CA----TACTCGAAGGGA-AGCAACTTTGTCCAG
gi|8869 : tTAA-AGACTATTT-CTATA--TAGTTGCATGCGCATC--ATTTC-CG----CGCACATAGGGA-AGTAAC
gi|8870 : tTAA-AGACGATTT-CTCAA--GTTTTTCATGTGAACC--AATTC-------CACAAAAATGGT-AGTACCTTTGT
gi|8871 : tTAA-GGATGATTG-CTATA--GGTTTCCACGCACAC------------------A-AAAGGGA-AACAATTTTGTatagac
gi|8872 : tTAA-GGACGATTG-CTGTA--GTTTTTCATGCGCACC--AACTC-CG----CGCACAAAGGGA-AACAATTTTGTCGAGgcagac
gi|8873 : TAA-GGACGATTG-CTATA--GTTTTCCATGCAC-----------CG----CGCACAAAGGGA-AGAAATTTTGTCGAG
gi|8874 : TAATGGACGATTG-CTACA--GGTTTTCACGTTCACC--TGCTC-CG----CGCACAGAGGAA-AGCAATTTTGac
gi|8875 : TAA-CGACGATTT-CTATA--GATTTCCATGCGCACT--AATTCATGAAATAGCACAGGGGGCTAGCAAATCTGTC
gi|8876 : AA-AGGCAATTT-CTACA--GTTTTTCATGCGTACC--AATTC-TA----TACACATAGAGA-AGCAACTTTGTCGA
gi|8877 : AA-AGACGGTTT-CTGTA--GTTTT-CATGCGCACC--AACTC-TG----CGCACAAAGATA-AGCAACTCTATTGAG
gi|8878 : GACGACTT-CTATA--GTTTTTCATGCGCATC--AATTC-CG----CGCACAAAGGGA-AGCAACTCTGTCGA
gi|8879 : GACATTTT-CTATA--GTTTTTCATATGCACC--AATTC-CA----CCCATAAAGGGA-AGCAATTTTGTTGAG
gi|8880 : GACGATTT-CTTTA--GTGTTATATGCGCATC--AATAC-CG----CACACAAAGGGA-AGCAACTTTGCCGAa
gi|8881 : ATGATTT-GTATA--GATTTTCATGTGCACC--AATCC-CG----CACAGAAAGGGA-AGCAACTGTGTCAAG
gi|8882 : GATTG-CTATA--GTATTTCATGCGCACT--AACTC-CG----CTCATAAAAGGA-ATCAATTTTGTCAAGa
gi|8883 : CATGCGCCCT--AATTC-TG----CGCACAAAGGGA-AGTAA-TTTGTCGAGac
Alignments
lowQualScore : 1 33 11 11 1 0 1111 0 1
lowQualScore : . .. .. .. . . .... . .
lowQualScore : 0 55 11 11 2 8 7777 8 0
consensus : TAA-GGACGATTT-CTATA--GTTTTTCATGCGCACC--AACTC-CG----CGCACAAAGGGA-AGCAACTTTGTCGAG
Reference ( family-471 ) : TAA-GGACGATTT-CTATA--GTTTTTCATGCGCACC--AACTC-CG----CGCACAAAGGGA-AGCAACTTTGTCGAG
gi|8835 : TAA-GAACGTTTT-TTATA--GTTTTCCATGCGCACC--AATTC-CA----CGCACAAAGGGC-AGCAACTTTGTCGAG
gi|8836 : tTAA-GGACGATTG-CTATA--GTTTT-CATGCGCACC--ATTTC-CG----TACACAAAGGGA-AGCAA-TTTGTCGAac
gi|8837 : tTAA-GGACGTTTG-CTATA--GTTTTTTATGCACCCC--AACTC-CG----CGCACAAAAGGA-AGCAATTTTGTCAAGaac
gi|8838 : tTAA-GGACGATTG-CTATA--GTTTTTCATGCGCTTC--AGTTC-CG----CACACAAAGGGA-AGCAACTTCGac
gi|8839 : tTAA-GGACGAATC-CTATA--TTTTTTCATGTGCACC--AGTTC-CG----CGCACAAAGAGA-AGCATCTTTGTCGAGaga
gi|8840 : tTAA-AGACGATTG-CTATA--GTTTTTCATGCGCACC--AACTC-TA----CGCAAAAAGGGT-AGCATTTTTGTCGAGac
gi|8841 : tTAA-GGACGATTG-CTATA--GAATTTCATGCGCACC--AACTC-CG----CGAAAAAAGGGA-AGCAATTTTGTCCAGac
gi|8842 : tTGA-GGACGATTT-CTAGA--GTTTTTCATGCGCAAT--AAGTC-CG----CGCACAAAGGAA-AGCGACTTTGTCGAGac
gi|8843 : tTAA-GGAGGATGG-CTATA--GTTTTTCATGCGTACC--AACTC-TG----CACACAGAGGGA-AGCAATTTTGTCCAGac
gi|8844 : tTAA-AGACGATTT-CCATA--GTTTTTCATGTGCACC--AACTC-CG----CGCACCAAGGGA-AGCAATTTTGTCAAac
gi|8845 : tTAA-GGACGATTG-CTTTA--GTTTTACATGCACACA--AACTC-CG----CGCACTAAGGGA-AGCAATTCTGTCGAGcac
gi|8846 : tA-GGACAATTG-CTTTT--GTTCTTCATGAGCACC--AACTC-TG----CGCACAAAGGGA-AGCAATTTTGTCGAGa
gi|8847 : ttcTAA-GGACAACAG-CTATA--GTTTTTCATGCGCACC--AAATC-TG----CTTACAAAGGGA-AGCAATTTTGTAGAGac
gi|8848 : tTAA-AAACGTTTT-CTATA--GTTTTTCATGCCCACC--AATTC-CG----TGCACAAAGGGA-AGAAATTTTGTCGAGac
gi|8849 : tTAA-GGACGACTG-CTATC--GTTTTTCATGCACACA--AAAGC-CA----CGCACAAAGGGA-CGCAATTTTGTCGAG
gi|8850 : tTAC-GGGCGTTTT-CTATA--GTTTTTCATGCGCACT--AATTC-TG----CACATAAAGAGA-AGCAATTTTGTTGAGac
gi|8851 : tA-GGACGTTTT-TTATA--GCTTTTCATGCGCTCC--AATTC-TG----CGCATAAAGTGA-AGCAACTTTGTCGAac
gi|8852 : ttcTAA-AAACGATTAACTATA--GTTTTCTATGCATACC--AACTC-CG----CGCACAAAGGAA-AGCAACTTTATCCAGtac
gi|8853 : tGACGATTT-CTACA--GTTTTTCATGCGAATC--AATTC-CG----CGAACAAAGAGA-ATCAACTCTGTCGAGa
gi|8854 : ttacaTAA-TGACAATTG-CTA----GTTTTTCATGCACACC--AACTC-CA----CGCACAAAGGGA-GACAA-TTTGTCGAG
gi|8855 : tAA-GGACAACTG-CTATA--TTTTGTGATGTGCTCC--AACTC-TG----CGCATAAAGGGA-AGCAATTTTGTCGAG
gi|8856 : tcTAA-AGACGATTT-CTAAA--GTTTGTCATGCGAACA--AACTC-CG----AGCACAAAAGGA-AGCAATTTTATCGAGac
gi|8857 : tTAA-AGACGATTT-CTAGA--AAGTTTCATTCGTACC--AACTC-CG----CGCATAAAGGGA-AGCAACTATGTTGAGac
gi|8858 : tTAA-AGACGATTT-TTATG--GTTTTTCATGCACACC--AATAC-TG----CGCACAATGGGA-AGCAACCTTac
gi|8859 : tTAA-GGAAGATTG-TTATATCATTTTTCATGCGCACCCGAACTC-CA----CGCTCAAAAGGA-AGCACTTCTTTCGAG
gi|8860 : tTAA-GGAAGATTT-CTGGA--GTTTTTCATGCGCACC--ACTTC-CT----AACACAACTGAT-AGCAACTTTGTCGAGac
gi|8861 : tTAA-GGAAGCTTT-CTATA--GTTTTTCATGCGCACC--AATTC-CT----CACAGAAAGGGG-AGCAAac
gi|8862 : tTAA-GGGCTATT--CTATA--GTTGTGCATGTGCTTC--AATGC-TG----CGCACAAAGGGA-TTCAACTTTGTCGAG
gi|8863 : tTAA-GAACGTTTT-CTATA--GATTTGCATGAAAACC--AATTC-CG----CGCACTAAGGGA-AG---CTTTGTCGAGac
gi|8864 : tGATTT-CTAGA--GTTTT-CATATGCATC--AAGTT-TG----TGCACAAAGGGA-AGCAACTTTGTTGAGa
gi|8865 : ttaaataaTAA-GGACGATTG-CTTTA--GTTTTTGATGCGCACC--AACTC-CA----TGCACac
gi|8866 : tTAT-GGACGTTTT-CTATA--GTTTTTCATGCGCTCC--AATTC-TG----CGCACAA---GA-AGttttgtcgagac
gi|8867 : tTAT-GGACGTTTT-CTATA--GTTTTTCATGCGCTCC--AATTC-TG----CGCACAA---GA-AG
gi|8868 : tTAA-GAA-AATTC-CAACA--GTTTGTCATGCTCACC--AGTTC-CA----TACTCGAAGGGA-AGCAACTTTGTCCAG
gi|8869 : tTAA-AGACTATTT-CTATA--TAGTTGCATGCGCATC--ATTTC-CG----CGCACATAGGGA-AGTAAC
gi|8870 : tTAA-AGACGATTT-CTCAA--GTTTTTCATGTGAACC--AATTC-------CACAAAAATGGT-AGTACCTTTGT
gi|8871 : tTAA-GGATGATTG-CTATA--GGTTTCCACGCACAC------------------A-AAAGGGA-AACAATTTTGTatagac
gi|8872 : tTAA-GGACGATTG-CTGTA--GTTTTTCATGCGCACC--AACTC-CG----CGCACAAAGGGA-AACAATTTTGTCGAGgcagac
gi|8873 : TAA-GGACGATTG-CTATA--GTTTTCCATGCAC-----------CG----CGCACAAAGGGA-AGAAATTTTGTCGAG
gi|8874 : TAATGGACGATTG-CTACA--GGTTTTCACGTTCACC--TGCTC-CG----CGCACAGAGGAA-AGCAATTTTGac
gi|8875 : TAA-CGACGATTT-CTATA--GATTTCCATGCGCACT--AATTCATGAAATAGCACAGGGGGCTAGCAAATCTGTC
gi|8876 : AA-AGGCAATTT-CTACA--GTTTTTCATGCGTACC--AATTC-TA----TACACATAGAGA-AGCAACTTTGTCGA
gi|8877 : AA-AGACGGTTT-CTGTA--GTTTT-CATGCGCACC--AACTC-TG----CGCACAAAGATA-AGCAACTCTATTGAG
gi|8878 : GACGACTT-CTATA--GTTTTTCATGCGCATC--AATTC-CG----CGCACAAAGGGA-AGCAACTCTGTCGA
gi|8879 : GACATTTT-CTATA--GTTTTTCATATGCACC--AATTC-CA----CCCATAAAGGGA-AGCAATTTTGTTGAG
gi|8880 : GACGATTT-CTTTA--GTGTTATATGCGCATC--AATAC-CG----CACACAAAGGGA-AGCAACTTTGCCGAa
gi|8881 : ATGATTT-GTATA--GATTTTCATGTGCACC--AATCC-CG----CACAGAAAGGGA-AGCAACTGTGTCAAG
gi|8882 : GATTG-CTATA--GTATTTCATGCGCACT--AACTC-CG----CTCATAAAAGGA-ATCAATTTTGTCAAGa
gi|8883 : CATGCGCCCT--AATTC-TG----CGCACAAAGGGA-AGTAA-TTTGTCGAGac
blockSeqs : AA TC CG T AAAT T
blockSeqs : G . . C . C
blockSeqs : G . . T . C
blockSeqs : G . . T . T
blockSeqs : C . . C . T
blockSeqs : G . . C . C
blockSeqs : G . . G . T
blockSeqs : T . . C . T
blockSeqs : G . . C . T
blockSeqs : T . . C . T
blockSeqs : G . . C . T
blockSeqs : G . . A . T
blockSeqs : G . . T . T
blockSeqs : T . . A . T
blockSeqs : G . . T . C
blockSeqs : T . . T . C
blockSeqs : T . . C . C
blockSeqs : T . . T . T
blockSeqs : G . . C . T
blockSeqs : G . . C . C
blockSeqs : T . . C . C
blockSeqs : T . . C . T
blockSeqs : T . . T . C
blockSeqs : G . . C . C
blockSeqs : T . . T . C
blockSeqs : T . . T . C
blockSeqs : T . . T . C
blockSeqs : T . . T . C
blockSeqs : G . . G . C
blockSeqs : T . . C . T
blockSeqs : T . . T . T
blockSeqs : C . . T . T
blockSeqs : T . . T . T
blockSeqs : T . . T . A
blockSeqs : G . . T . C
blockSeqs : G . . C . C
blockSeqs : G . . C . C
blockSeqs : G . . T . T
blockSeqs : T . . T . C
blockSeqs : T . . C . C
blockSeqs : T . . T . T
blockSeqs : T . . T . .
blockSeqs : T . . T . .
blockSeqs : T . . T . .
blockSeqs : T . . C .
blockSeqs : G . . T .
blockSeqs : . . . . .
blockSeqs : . . .
blockSeqCons :
originalCons : TAA-GGACGATTT-CTATA--GTTTTTCATGCGCACC--AACTC-CG----CGCACAAAGGGA-AGCAACTTTGTCGAG
finalCons : TAA-GGACGATTT-CTATA--GTTTTTCATGCGCACC--AACTC-CG----CGCACAAAGGGA-AGCAACTTTGTCGAG
Alignments
lowQualScore : 1 33 11 11 1 0 1111 0 1
lowQualScore : . .. .. .. . . .... . .
lowQualScore : 0 55 11 11 2 8 7777 8 0
consensus : TAA-GGACGATTT-CTATA--GTTTTTCATGCGCACC--AACTC-CG----CGCACAAAGGGA-AGCAACTTTGTCGAG
Reference ( family-471 ) : TAA-GGACGATTT-CTATA--GTTTTTCATGCGCACC--AACTC-CG----CGCACAAAGGGA-AGCAACTTTGTCGAG
gi|8835 : TAA-GAACGTTTT-TTATA--GTTTTCCATGCGCACC--AATTC-CA----CGCACAAAGGGC-AGCAACTTTGTCGAG
gi|8836 : tTAA-GGACGATTG-CTATA--GTTTT-CATGCGCACC--ATTTC-CG----TACACAAAGGGA-AGCAA-TTTGTCGAac
gi|8837 : tTAA-GGACGTTTG-CTATA--GTTTTTTATGCACCCC--AACTC-CG----CGCACAAAAGGA-AGCAATTTTGTCAAGaac
gi|8838 : tTAA-GGACGATTG-CTATA--GTTTTTCATGCGCTTC--AGTTC-CG----CACACAAAGGGA-AGCAACTTCGac
gi|8839 : tTAA-GGACGAATC-CTATA--TTTTTTCATGTGCACC--AGTTC-CG----CGCACAAAGAGA-AGCATCTTTGTCGAGaga
gi|8840 : tTAA-AGACGATTG-CTATA--GTTTTTCATGCGCACC--AACTC-TA----CGCAAAAAGGGT-AGCATTTTTGTCGAGac
gi|8841 : tTAA-GGACGATTG-CTATA--GAATTTCATGCGCACC--AACTC-CG----CGAAAAAAGGGA-AGCAATTTTGTCCAGac
gi|8842 : tTGA-GGACGATTT-CTAGA--GTTTTTCATGCGCAAT--AAGTC-CG----CGCACAAAGGAA-AGCGACTTTGTCGAGac
gi|8843 : tTAA-GGAGGATGG-CTATA--GTTTTTCATGCGTACC--AACTC-TG----CACACAGAGGGA-AGCAATTTTGTCCAGac
gi|8844 : tTAA-AGACGATTT-CCATA--GTTTTTCATGTGCACC--AACTC-CG----CGCACCAAGGGA-AGCAATTTTGTCAAac
gi|8845 : tTAA-GGACGATTG-CTTTA--GTTTTACATGCACACA--AACTC-CG----CGCACTAAGGGA-AGCAATTCTGTCGAGcac
gi|8846 : tA-GGACAATTG-CTTTT--GTTCTTCATGAGCACC--AACTC-TG----CGCACAAAGGGA-AGCAATTTTGTCGAGa
gi|8847 : ttcTAA-GGACAACAG-CTATA--GTTTTTCATGCGCACC--AAATC-TG----CTTACAAAGGGA-AGCAATTTTGTAGAGac
gi|8848 : tTAA-AAACGTTTT-CTATA--GTTTTTCATGCCCACC--AATTC-CG----TGCACAAAGGGA-AGAAATTTTGTCGAGac
gi|8849 : tTAA-GGACGACTG-CTATC--GTTTTTCATGCACACA--AAAGC-CA----CGCACAAAGGGA-CGCAATTTTGTCGAG
gi|8850 : tTAC-GGGCGTTTT-CTATA--GTTTTTCATGCGCACT--AATTC-TG----CACATAAAGAGA-AGCAATTTTGTTGAGac
gi|8851 : tA-GGACGTTTT-TTATA--GCTTTTCATGCGCTCC--AATTC-TG----CGCATAAAGTGA-AGCAACTTTGTCGAac
gi|8852 : ttcTAA-AAACGATTAACTATA--GTTTTCTATGCATACC--AACTC-CG----CGCACAAAGGAA-AGCAACTTTATCCAGtac
gi|8853 : tGACGATTT-CTACA--GTTTTTCATGCGAATC--AATTC-CG----CGAACAAAGAGA-ATCAACTCTGTCGAGa
gi|8854 : ttacaTAA-TGACAATTG-CTA----GTTTTTCATGCACACC--AACTC-CA----CGCACAAAGGGA-GACAA-TTTGTCGAG
gi|8855 : tAA-GGACAACTG-CTATA--TTTTGTGATGTGCTCC--AACTC-TG----CGCATAAAGGGA-AGCAATTTTGTCGAG
gi|8856 : tcTAA-AGACGATTT-CTAAA--GTTTGTCATGCGAACA--AACTC-CG----AGCACAAAAGGA-AGCAATTTTATCGAGac
gi|8857 : tTAA-AGACGATTT-CTAGA--AAGTTTCATTCGTACC--AACTC-CG----CGCATAAAGGGA-AGCAACTATGTTGAGac
gi|8858 : tTAA-AGACGATTT-TTATG--GTTTTTCATGCACACC--AATAC-TG----CGCACAATGGGA-AGCAACCTTac
gi|8859 : tTAA-GGAAGATTG-TTATATCATTTTTCATGCGCACCCGAACTC-CA----CGCTCAAAAGGA-AGCACTTCTTTCGAG
gi|8860 : tTAA-GGAAGATTT-CTGGA--GTTTTTCATGCGCACC--ACTTC-CT----AACACAACTGAT-AGCAACTTTGTCGAGac
gi|8861 : tTAA-GGAAGCTTT-CTATA--GTTTTTCATGCGCACC--AATTC-CT----CACAGAAAGGGG-AGCAAac
gi|8862 : tTAA-GGGCTATT--CTATA--GTTGTGCATGTGCTTC--AATGC-TG----CGCACAAAGGGA-TTCAACTTTGTCGAG
gi|8863 : tTAA-GAACGTTTT-CTATA--GATTTGCATGAAAACC--AATTC-CG----CGCACTAAGGGA-AG---CTTTGTCGAGac
gi|8864 : tGATTT-CTAGA--GTTTT-CATATGCATC--AAGTT-TG----TGCACAAAGGGA-AGCAACTTTGTTGAGa
gi|8865 : ttaaataaTAA-GGACGATTG-CTTTA--GTTTTTGATGCGCACC--AACTC-CA----TGCACac
gi|8866 : tTAT-GGACGTTTT-CTATA--GTTTTTCATGCGCTCC--AATTC-TG----CGCACAA---GA-AGttttgtcgagac
gi|8867 : tTAT-GGACGTTTT-CTATA--GTTTTTCATGCGCTCC--AATTC-TG----CGCACAA---GA-AG
gi|8868 : tTAA-GAA-AATTC-CAACA--GTTTGTCATGCTCACC--AGTTC-CA----TACTCGAAGGGA-AGCAACTTTGTCCAG
gi|8869 : tTAA-AGACTATTT-CTATA--TAGTTGCATGCGCATC--ATTTC-CG----CGCACATAGGGA-AGTAAC
gi|8870 : tTAA-AGACGATTT-CTCAA--GTTTTTCATGTGAACC--AATTC-------CACAAAAATGGT-AGTACCTTTGT
gi|8871 : tTAA-GGATGATTG-CTATA--GGTTTCCACGCACAC------------------A-AAAGGGA-AACAATTTTGTatagac
gi|8872 : tTAA-GGACGATTG-CTGTA--GTTTTTCATGCGCACC--AACTC-CG----CGCACAAAGGGA-AACAATTTTGTCGAGgcagac
gi|8873 : TAA-GGACGATTG-CTATA--GTTTTCCATGCAC-----------CG----CGCACAAAGGGA-AGAAATTTTGTCGAG
gi|8874 : TAATGGACGATTG-CTACA--GGTTTTCACGTTCACC--TGCTC-CG----CGCACAGAGGAA-AGCAATTTTGac
gi|8875 : TAA-CGACGATTT-CTATA--GATTTCCATGCGCACT--AATTCATGAAATAGCACAGGGGGCTAGCAAATCTGTC
gi|8876 : AA-AGGCAATTT-CTACA--GTTTTTCATGCGTACC--AATTC-TA----TACACATAGAGA-AGCAACTTTGTCGA
gi|8877 : AA-AGACGGTTT-CTGTA--GTTTT-CATGCGCACC--AACTC-TG----CGCACAAAGATA-AGCAACTCTATTGAG
gi|8878 : GACGACTT-CTATA--GTTTTTCATGCGCATC--AATTC-CG----CGCACAAAGGGA-AGCAACTCTGTCGA
gi|8879 : GACATTTT-CTATA--GTTTTTCATATGCACC--AATTC-CA----CCCATAAAGGGA-AGCAATTTTGTTGAG
gi|8880 : GACGATTT-CTTTA--GTGTTATATGCGCATC--AATAC-CG----CACACAAAGGGA-AGCAACTTTGCCGAa
gi|8881 : ATGATTT-GTATA--GATTTTCATGTGCACC--AATCC-CG----CACAGAAAGGGA-AGCAACTGTGTCAAG
gi|8882 : GATTG-CTATA--GTATTTCATGCGCACT--AACTC-CG----CTCATAAAAGGA-ATCAATTTTGTCAAGa
gi|8883 : CATGCGCCCT--AATTC-TG----CGCACAAAGGGA-AGTAA-TTTGTCGAGac