lowQualScore : 77777777777777777777777777777 22 111
lowQualScore : 0 11 22222 33 8 77 555555555 111 88888 777 1 3 1 3 333 333 22 22 44444 1 333 2 11111111111111111111111111111 2 2 999 2 2 77 888
lowQualScore : . .. ..... .. . .. ......... ... ..... ... . . . . ... ... .. .. ..... . ... . ............................. . . ... . . .. ...
lowQualScore : 9 22 22222 77 9 99 111111111 666 44444 999 9 8 9 1 333 333 55 55 55555 9 333 0 77777777777777777777777777777 0 0 666 0 0 66 111
consensus : GAGGG-GGGAT--CAGAAAGTTCGTAGACTTTTG-----CCATAAC--TTNTT--T-------T-TAT---C--A--ATTATAC---AAT-G-CACAA-TAGT---GTTA---TTGTATTTGAAATAAA--TGTAT--ATGG-----GACATAT-TTTG---AAAA-TTTTAG-----CATGATA-----C-----G-----TCAACTA-T-T--AAAA-AAATAAG-GCGCTATTCAAAGCATAGCAGTTAGATATGTCGGGGCAAAATGATGACGT
Reference ( gi|131405 ) : GAGGG-GGGAT--CAGAAAGTTTGTAGACTTTTG-----CCATAAC--TTATT--T-------T-TAT---C--A--ATTATAC---AAT-G-CACAA-TAGT---GTTA---TTGTATTTGAAATAAA--TGTAT--ATGG-----GACATAT-TTTG---AAAA-TTTTAG-----C-----A-----C-----G-----TCAACTA-T-T--GAAA-AAATAAG-GCGCTTGTCAAAGCATAGCAGTTGGTTATGTCGGGGCAAAATGATGACGT
gi|131408 : GAAGA-GGGAT--CAGAAACTTTGTCGACTTTTG-----CAATAAC--TTATT--T-------A-TAT---C--A--ATTATAC---AAT-G-CACAA-TAGT---GTTA---TTTTATTTGAAATAAA--TGTAT--ATGG-----GACATAT-TTTG---AAAA-TTTTAG-----C-----A-----TGATAAG-----TCAACTA-T-T--AAAA-AAATAAG-GCGCTAGTCAAAGCATAGCAGTTAGTTATGTTGGGGCAAAATGATGACGT
gi|131404 : GAGGG-GGG-T--CAGAAAGTTTGTAGACTTTTG-----CTATAAC--TTATT--T-------A-TGT---C--A--ATTATAC---AAT-G-CACAA-TAGT---GTTA---ATGTATTTGAAATAGA--TGTAT--ATGG-----GACATAT-TTTG---AAAA-TTTTAG-----CATGAAA-----C-----A-----TTAACTA-T-T--AAGA-AAATAAG-GCACTATTCAAAGCATAGCAGTTAGATATGTCGGGGCAAAATGATGACGT
gi|131413 : GAGGG-GCGAT--CAGAAAGTTTGTAGACTTTTG-----CCATAAC--TTATT--T-------A-CAT---C--A--ATTATAC---AAT-G-CACAA-TAGT---GTAA---TTGTATCTTAGATTAA--TATAT--ATGG-----GACATAT-TTTG---AAAA-TTTTAG-----CTTTATA-----C-----A-----TCAACTA-T-T--AAGA-AAATAAG-GCACTTTTCAAAGCATAGCAGTTAGATATGTCTGGGCAAAATGATGACGT
gi|131410 : GAGGG-TGGAT--CAGAAAGTTTGAAGACTTTTG-----CCATAAC--TTATT--T-------A-TAT---C--A--ATTATAC---AAC-G-CACAA-TAGT---GTTA---TTGTATTTGAAATAAA--TGTAT--ATGG-----GACATAT-TTTG---AAAT-TTTTTG-----CATGATA-----C-----G-----TCAACTA-T-T--AAGA-AATTAAG-GCACTGTTCAAAGCAGAGCAGTTAGATATGTCAGGGCAAAATGATGACGT
gi|131407 : GAGGG-GGGAT--CAGAAAGTTCGTAGACGTTTG-----CCATTAC--TTATT--T-------A-TAT---C--A--ATTATAC---AAT-G-CACAA-TAGT---GTTA---TTGTATTTGAAATAAA--TGTAT--ATGG-----GACATTT-TTTG---AAAA-TTTTAG-----CATGATA-----C-----A-----TCAATCT-T-T--AAAA-ACATAAG-GCGCTATTCAAAGCATAGCAATTAGATATGTCGGAGCAAAAGGATGACGT
gi|131415 : GAGGG-GGGAT--CAGAAAGTTCGTAGACTTTTG-----CCATAAC--TTATT--T-------A-TAT---C--A--ACTATAC---AAT-G-CACAA-AAGA---GTTA---TTGTATTTGAAATAAA--TGTAT--ATGT-----AACATAT-TTTG---AAAA-TTTTAG-----CTTGATA-----C-----A-----TCAAAAA-TAA--AAAA-AAATAAG-GCGCTATTCAAAGCATGGCAGTTAGTTATGTCGGGGCAAAATGATAACGT
gi|131411 : GAGGG-GGGAT--CAGAAAGTTCATAGAATTTTG-----CCATAAC--TTATT--T-------A-TAT---C--A--ATTATGC---AAT-G-TACAA-TAGT---GTTA---TTGTACTTGAAATAAA--TGTAT--ATGG-----GACATAT-TTTG---AAAA-TTATAG-----CATGATA-----C-----A-----TCAACTA-T-T--AAGA-AAATAAG-GCACTATTCAAAGTATAGCAGTTAGATATGTGGGGGCAAACTGATGAGGT
gi|131416 : GACGG-GAAAT--CAGAAAATTTGTAGACTTTTG-----CCATAAC--TTATT--T-------A-TAT---C--A--ATTATAC---AAT-G-AATAA-TTGT---GTCA---TTGTATTTGAAATAAA--TGTAT--ATGG-----GACATAT-TTTG---ACAA-TTTTAGTATGAT-----A-----C-----G-----TCAATTATT-T--AAAA-AAATAAG-GTGCTATTCAAAGCATAGCAGTTTGTTATATCAGGGCAAAATGATGACGT
gi|131412 : GAGGG-GGGAT--CAGAAAGTTTGTAGATTTTTG-----CTATAAC--TTATT--T-------A-TAT---C--A--ATAACAC---AAT-T-CACAA-TATT---GTTA---TTGTATTTAAAATAAA--TGTAT--TTGG-----GACATAT-TTTG---AAAA-TTTTAG-----TATGAAA-----C-----G-----TCAACTA-T-T--TAGA-AAAAAAG-GCACTATTCAAAACATAGCAGTTAGATATGTCGGGGCAAAACGATGACGT
gi|131419 : GAGTG-GGGATATCGGAAAATTCGTAGACTTTTG-----CCATAGT--TTTTT--T-------C-TAT---C--A--ATTATGT---CAT-G-CACAA----T---GTTA---TTGTATTTAAATTAAA--TGTAT--AGGA-----GACATAT-TTTGAAAAAAA-ATGTAG-----TATGAAA-----T-----G-----TCACCTA-T-T--AAAA-CAAGTAG-GCGCTATTCAAAGCATAACAGTTACATATGTCAGGACAAAATGACGACAT
gi|131421 : GAGGG-GGGAT--CAGAAAATTCGTAGACTTTTG-----CCACTAC--TTTTT--T-------A-TAT------G--ATTG-ACG--AATAA-CATAC-TAGT---GTGA---AAGTATTTGAAATAGG--TGTAT--TTGT-----GACATAT-TTTA---ACGA-TCCCAG-----CATGATA-----C-----G-----TCAACTA-T-T--AAGG-AAATAAG-ACGCTATTGAAACCATAACAGTTATGTATGTCGGGGCAAAATGTTGACGT
gi|131425 : GAGGG-GGGAT--CAGAAAGTTCGTAGATTTTTG-----CCATAAC--TTATT--T-------A-TAT---C--A--GTTATAC---AAT-G-CAAAA-TATT---GTTACACTTG--TTTGAA--AAG--TATAG--GTAG-----GA
gi|131424 : GAGGG-GGGAT--CAGAAAGTTTGTAGACTTTTG-----CCATAAC--T--TT--T-------T-TATTTAC--A--ATTGTA
gi|131427 : GAGGG-GGGAT--CAGAAAGTTTGTAGACTTTTG-----CCATAACTGTTATA--T-------T-TAT---C-----ATTA
gi|131426 : GAGGG-GGGAT--CAGAAAGTTCGTAGACTTTTG-----CCATAAC--TTTTTTAT-------T-TAT---C-----ATTGTAatt
gi|131406 : GAGGG-GGGAT--CAGAAAGTTTGTATACTTTTG-----CCATAAC--T--TT--T-------T-TAT---T--T--ATTAT
gi|131409 : GAGGG-GGGAT--CAGAAAGTTTGTAGACTATTG-----CCATAAC--TT-TT--T-------T-TAT---T--T--ATCAT
gi|131428 : GAGGG-GGGAT--CAGAAAGTTTGTAGACTATTG-----CCATAAC--TTTTTTAT-------T-TAT---C-----ATTGTA
gi|131429 : GAGGG-GGGAG--CAGAAAGTTTGTAGACTTTTG-----CCATAAC--T--TT--T-------T-TAT---
gi|131423 : GAGGG-GGGCT--CAGAAAGTTTGTAGACTTTTG-----CCACAAC--TTTTTTAT-------T-TAT---C--A--
gi|131430 : GAGGA-GGGAT--CAGAAAGTTCATAGACTTTTG-----CCATAAC--TT-TT--T-------T-TAT---T--ATCATTGTA
gi|131418 : GAGGG-GGGAT--CAGAAAGTTTGTAGACTTTTG-----TTATACCT-TTGTTA-T-------T-TAT---C--A--ATttcatataat
gi|131432 : GAGGG-GGGAT--CAGAAAGTTTGTAGACATTTG-----CCATTAT--TTTTT--T-------T-TAgtactctaata
gi|131433 : GGGGG-GGGGT--CAGAAAGTATGTAGACATTTG-----CCATAAC----ATT--T-------T-TAT---C--T--ATCAT
gi|131422 : GAGGG-GGGAT--CAGAAAATTCGTAGACTTTTG-----CCATTAC--TTTTTTAT-------T-TAC---C-----ATTGTA
gi|131434 : GAGGA-GGGTT--CAGAAAGTTTGCAGACTTTTG-----CCATACC----ATT--T-------T-TAT---T--A--ACCAT
gi|131417 : GAGGG-GGGAT--CA-AAAGTTTGTAAACATTTG-----CCATAAC--TTTTTTAT-------T-TAT---C-----ATTGTA
gi|131435 : GAAGG-GGGAT--CAGAAAGTTCGTAGACATTTG-----CTTTAAC--T--TT--T-------T-TAT---T--T--ATTAT
gi|131414 : GAGGG-GGGGT--CAGAAAGTTCATAGACTTTTA-----CCATATC--T--TT--T-------T-TAT---
gi|131431 : GAAGG-GGGAT--CAGAAAGTTCGTAGACTTTTG-----TCATA----TT-TT--T-------T-TAT---
gi|131420 : GAGGG-GGGAT--CAGAAAGTTCGAAGATTCTTA-----CCCTAACA-TTTGT--T-------T-TAT---T--A--ATTATat
gi|131437 : AGGGCGAGAT--CAGAAAGTTCGTAAACTGTTG-----TCATAAC--CTATT--C----------AT---C------TCATGC---AAT-G-CACAA-TATT---ATTA---TTGTATTTGAAAAAAAAATGTTT--ATGG-----GATATAT-TTTG---AAAA-TTATAG-----C-----ATGATGT-----G-----TGAACTC-T-T--AAAATAAATAGGTGCGGTTTTCAAACAATAACAGTTAAATATGTCGGGACAAAATGACAACGT
gi|131436 : AGGG-GGGAT--CAGAAAGTTTGTAGACTTTTG-----CCATAAC--TTTTTTAT-------T-TAT---C-----ATTGTA
gi|131438 : AGGG-GGTAT--CAGAAAGTTCATAGA-TTTTG-----CCATTAC--T--TT--T-------T-TAT---
gi|131439 : GGA-GGGAT--CGGAAAATGTGTAGACTTTTG-----CCACAACT-TTATT--T-------A-TAT---C--A--ATTATGC---AAT-G-CACAATTATT---GTTA---TTGTATTTGAAATAAA--TG--T--ATGA-----GACTTGTATATG---GGAA-TTTTAG-----CATGATA-----C-----A-----TCAACTA-T-T--AAAA-AAATAAG-AAGCTATTCAAAGCATAACTGTTAAATAC----GGGCAAAATGACGACATtca
gi|131442 : GGG-GGAAT--CAGAAAATCTGTTGACCTTTGACTTGTCATAAC--TTTTT--T-------T-TAT---CTCA--ATGATGC---AAT-G-TACAC-TATT---CTTA---TTGTAATT------AA--TGTAT--ATGG-----GATGTAT-TCTG---AAAA-TTTGAG-----C-----A-----T-----GATACATCAATTA-T-T--CAAA-AGACAAG-GTGCTATTCAAACCATGACAGTTGTATATGTCGGGGCAAAATGAAGACAT
gi|131441 : GGG-GGGAT--CAGAAAGTTCGTAGACTTTTG-----CCATAAC--TT-TT--T-------T-TAT---
gi|131440 : GGG-GGGAT--CAGAAAGTTCGTAGACTTTTG-----CCATAAC--TT-TT--T-------T-TAT---
gi|131444 : GG-GGGAT--CGGAAAGTTTGTAGACTTTTG-----CCATAGC--T--TT--T-------T-TA
gi|131446 : GG-GGGAT--CAGAAAGTTCATAGACATTTG-----CCATAAC--TTCTT--T-------
gi|131443 : GG-GGGTT--CAGAAAGTTTGTAGAC--TTG-----CCATATC--TTTTT--T-------T-TAT---T--T--ATCATat
gi|131445 : GA-GGGAT--CAGAAAGTCCGTAGACTTTTG-----CCATAAC--TTATT--T-------A-TAT---------GTTA-ACGA-AAT---CTCAA-GA-T---GGTA------TACTGGACACAAA--ATTCT--GTAA-----AACATGC-TTTG---A
gi|131448 : G-GGGAT--CAGAAAGTTAGTAGACTTTTG-----CCACAAC--TTTTT--T-------A-TAT---G--A--TTTATG----AAT-AACATAA-TATT---GTGA---T-------AAAATAAA--TGTAT--TTAT-----GACATAT-TTTA---AAAT-TCTTGG-----C-----A-----T-----GATATGTCAACTA-T-T--AAAA-AAATAAG-GCGCTATTGAAACCATAACAGTTATGTATGTCGGGGCAAAATGTTGACGTttccaatatgtcttcaaatcaact
gi|131447 : G-GGGAT--CAGAAAGTTAGTAGACTTTTG-----CCACAAC--TTTTT--T-------A-TAT---G--A--TTTATG----AAT-AACATAA-TATT---GTGA---T-------AAAATAAA--TGTAT--TTAT-----GACATAT-TTTA---AAAT-TCTTGG-----C-----A-----T-----GATATGTCAACTA-T-T--AAAA-AAATAAG-GCGCTATTGAAACCATAACAGTTATGTATGTCGGGGCAAAATGTTGACGT
gi|131449 : T--CAGAAAATTGGTAGACATTTG-----CCAAAAC--TTTTT--A-------A-TAT---G--A--AT-ATG----AAT-A--ACA--TAGTTTTGTGA---TAGTATTTAAAATAAG--TGGATTTATGACTTATGACATAT-ATAA---AAAA-TTCCAG-----C-----ATGATAC-----G-----TCAGCTT-T-T--AAAG-AAATAAG-GCGCTATTCATACCATAGCAGTTATATATTTCGGGGCAAAATGTTGAC
gi|131450 : --CGGAACGATCATAGACTTTTA-----CCAGAAC--TTATT--TATTTCAGT-TAT---C--A--GTTATAC---AAT-G-CACAA-TATT---ATTA---TTGTATTTCAAAT---------T--TTGG-----GACAAAT-TTTG---AAAA-TTTTGGTATAAT-----A-----C-----G-----TCAACTA-T-T--AACA-AAATAAG-GC
gi|131451 : --TTATA--T-------TATAT---T--AT-AATATATTGTAAT-A-TATTA-TAGT---GTTT---TTGTATTTGAAATAAA--TGTAT--GTGT-----GACATAT-TTAA---AAAATTTTTAG-----C-----A-----A-----A-----TCAAATA-T-TTAAAAA-AAAAAAT-GCGCTaatatt
gi|131452 : A--TATAT--ATGG-----GACATAT-TTTG---AAAA-TTTTAG-----CTTGATA-----T-----G-----TCAACTA-T-T--AAGA-AAATAAG-GCACTATTCAAAGCATAACAGTTAGATATAGCGGGGCAAAATGATGACGTat
Alignments
lowQualScore : 111
lowQualScore : 0 11 22222 22 3 000 666666666 7777777 1 1 1 44 1 3 1 2 333 333 22 333 44444 1 333 1 1 1 22 1 1
lowQualScore : . .. ..... .. . ... ......... ....... . . . .. . . . . ... ... .. ... ..... . ... . . . .. . .
lowQualScore : 9 22 11111 99 3 555 333333333 1111111 1 1 1 11 7 6 8 5 222 222 44 111 33333 8 222 9 9 9 66 9 9
consensus : GAGGG-GGGAT--CAGAAAGTTCGTAGACTTTTG-----CCATAAC--TTNTT---T-------T-TATC--A----AT-T-AT-AC--AAT-G-CACAAT-AGT---GTTA---TTGTATTTGAAATAAA--TGTAT--ATGG-----GACATATTT-TG---AAAA-TTTTAGCATGATACGTCAACTA-T-T--AAAA-AAATAAG-GCGCTATTCAAAGCATAGCAGTTAGATATGTCGGGGCAAAATGATGACGT
Reference ( family-469 ) : GAGGG-GGGAT--CAGAAAGTTCGTAGACTTTTG-----CCATAAC--TTNTT---T-------T-TATC--A----AT-T-AT-AC--AAT-G-CACAAT-AGT---GTTA---TTGTATTTGAAATAAA--TGTAT--ATGG-----GACATATTT-TG---AAAA-TTTTAGCATGATACGTCAACTA-T-T--AAAA-AAATAAG-GCGCTATTCAAAGCATAGCAGTTAGATATGTCGGGGCAAAATGATGACGT
gi|131404 : GAGGG-GGG-T--CAGAAAGTTTGTAGACTTTTG-----CTATAAC--TTATT---T-------A-TGTC--A----AT-T-AT-AC--AAT-G-CACAAT-AGT---GTTA---ATGTATTTGAAATAGA--TGTAT--ATGG-----GACATATTT-TG---AAAA-TTTTAGCATGAAACATTAACTA-T-T--AAGA-AAATAAG-GCACTATTCAAAGCATAGCAGTTAGATATGTCGGGGCAAAATGATGACGT
gi|131405 : GAGGG-GGGAT--CAGAAAGTTTGTAGACTTTTG-----CCATAAC--TTATT---T-------T-TATC--A----AT-T-AT-AC--AAT-G-CACAAT-AGT---GTTA---TTGTATTTGAAATAAA--TGTAT--ATGG-----GACATATTT-TG---AAAA-TTTTAGC-----ACGTCAACTA-T-T--GAAA-AAATAAG-GCGCTTGTCAAAGCATAGCAGTTGGTTATGTCGGGGCAAAATGATGACGT
gi|131406 : GAGGG-GGGAT--CAGAAAGTTTGTATACTTTTG-----CCATAAC--T--TT---T-------T-TATT--T----AT-T-AT-
gi|131407 : GAGGG-GGGAT--CAGAAAGTTCGTAGACGTTTG-----CCATTAC--TTATT---T-------A-TATC--A----AT-T-AT-AC--AAT-G-CACAAT-AGT---GTTA---TTGTATTTGAAATAAA--TGTAT--ATGG-----GACATTTTT-TG---AAAA-TTTTAGCATGATACATCAATCT-T-T--AAAA-ACATAAG-GCGCTATTCAAAGCATAGCAATTAGATATGTCGGAGCAAAAGGATGACGT
gi|131408 : GAAGA-GGGAT--CAGAAACTTTGTCGACTTTTG-----CAATAAC--TTATT---T-------A-TATC--A----AT-T-AT-AC--AAT-G-CACAAT-AGT---GTTA---TTTTATTTGAAATAAA--TGTAT--ATGG-----GACATATTT-TG---AAAA-TTTTAGCATGATAAGTCAACTA-T-T--AAAA-AAATAAG-GCGCTAGTCAAAGCATAGCAGTTAGTTATGTTGGGGCAAAATGATGACGT
gi|131409 : GAGGG-GGGAT--CAGAAAGTTTGTAGACTATTG-----CCATAAC--TTTTTTTAT-------T-TATC--A----
gi|131410 : GAGGG-TGGAT--CAGAAAGTTTGAAGACTTTTG-----CCATAAC--TTATT---T-------A-TATC--A----AT-T-AT-AC--AAC-G-CACAAT-AGT---GTTA---TTGTATTTGAAATAAA--TGTAT--ATGG-----GACATATTT-TG---AAAT-TTTTTGCATGATACGTCAACTA-T-T--AAGA-AATTAAG-GCACTGTTCAAAGCAGAGCAGTTAGATATGTCAGGGCAAAATGATGACGTt
gi|131411 : GAGGG-GGGAT--CAGAAAGTTCATAGAATTTTG-----CCATAAC--TTATT---T-------A-TATC--A----AT-T-AT-GC--AAT-G-TACAAT-AGT---GTTA---TTGTACTTGAAATAAA--TGTAT--ATGG-----GACATATTT-TG---AAAA-TTATAGCATGATACATCAACTA-T-T--AAGA-AAATAAG-GCACTATTCAAAGTATAGCAGTTAGATATGTGGGGGCAAACTGATGAGGT
gi|131412 : GAGGG-GGGAT--CAGAAAGTTTGTAGATTTTTG-----CTATAAC--TTATT---T-------A-TATC--A----AT-A-AC-AC--AAT-T-CACAAT-ATT---GTTA---TTGTATTTAAAATAAA--TGTAT--TTGG-----GACATATTT-TG---AAAA-TTTTAGTATGAAACGTCAACTA-T-T--TAGA-AAAAAAG-GCACTATTCAAAACATAGCAGTTAGATATGTCGGGGCAAAACGATGACGT
gi|131413 : GAGGG-GCGAT--CAGAAAGTTTGTAGACTTTTG-----CCATAAC--TTATT---T-------A-CATC--A----AT-T-AT-AC--AAT-G-CACAAT-AGT---GTAA---TTGTATCTTAGATTAA--TATAT--ATGG-----GACATATTT-TG---AAAA-TTTTAGCTTTATACATCAACTA-T-T--AAGA-AAATAAG-GCACTTTTCAAAGCATAGCAGTTAGATATGTCTGGGCAAAATGATGACGT
gi|131414 : GAGGG-GGGGT--CAGAAAGTTCATAGACTTTTA-----CCATATC--TTTTT---T-------
gi|131415 : GAGGG-GGGAT--CAGAAAGTTCGTAGACTTTTG-----CCATAAC--TTATT---T-------A-TATC--A----AC-T-AT-AC--AAT-G-CACAAA-AGA---GTTA---TTGTATTTGAAATAAA--TGTAT--ATGT-----AACATATTT-TG---AAAA-TTTTAGCTTGATACATCAAAAA-TAA--AAAA-AAATAAG-GCGCTATTCAAAGCATGGCAGTTAGTTATGTCGGGGCAAAATGATAACGTat
gi|131416 : GACGG-GAAAT--CAGAAAATTTGTAGACTTTTG-----CCATAAC--TTATT---T-------A-TATC--A----AT-T-AT-AC--AAT-G-AATAAT-TGT---GTCA---TTGTATTTGAAATAAA--TGTAT--ATGG-----GACATATTT-TG---ACAA-TTTTAGTATGATACGTCAATTATT-T--AAAA-AAATAAG-GTGCTATTCAAAGCATAGCAGTTTGTTATATCAGGGCAAAATGATGACGT
gi|131417 : GAGGG-GGGAT--CA-AAAGTTTGTAAACATTTG-----CCATAAC--TTTTTTA-T-------T-TATC-------AT-T-GT-A
gi|131418 : GAGGG-GGGAT--CAGAAAGTTTGTAGACTTTTG-----TTATACCT-TTGTTA--T-------T-TATC--A----AT-
gi|131419 : GAGTG-GGGATATCGGAAAATTCGTAGACTTTTG-----CCATAGT--TTTTT---T-------C-TATC--A----AT-T-AT-GT--CAT-G-CACAA----T---GTTA---TTGTATTTAAATTAAA--TGTAT--AGGA-----GACATATTT-TGAAAAAAA-ATGTAGTATGAAATGTCACCTA-T-T--AAAA-CAAGTAG-GCGCTATTCAAAGCATAACAGTTACATATGTCAGGACAAAATGACGACATgtactctaata
gi|131420 : GAGGG-GGGAT--CAGAAAGTTCGAAGATTCTTA-----CCCTAACA-TTTGT---T-------T-TATT--A----AT-T-AT-
gi|131421 : GAGGG-GGGAT--CAGAAAATTCGTAGACTTTTG-----CCACTAC--TTTTT---T-------A-TAT---G----AT-T-G--ACG-AATAA-CATACT-AGT---GTGA---AAGTATTTGAAATAGG--TGTAT--TTGT-----GACATATTT-TA---ACGA-TCCCAGCATGATACGTCAACTA-T-T--AAGG-AAATAAG-ACGCTATTGAAACCATAACAGTTATGTATGTCGGGGCAAAATGTTGACGT
gi|131422 : GAGGG-GGGAT--CAGAAAATTCGTAGACTTTTG-----CCATTAC--TTTTTTA-T-------T-TACC-------AT-T-GT-A
gi|131423 : GAGGG-GGGCT--CAGAAAGTTTGTAGACTTTTG-----CCACAAC--TTTTTTA-T-------T-TATC--A----
gi|131424 : GAGGG-GGGAT--CAGAAAGTTTGTAGACTTTTG-----CCATAAC--TTTTTTA-T-------T-TA-C--A----AT-T-GT-A
gi|131425 : GAGGG-GGGAT--CAGAAAGTTCGTAGATTTTTG-----CCATAAC--TTATT---T-------A-TATC--A----GT-T-AT-AC--AAT-G-CAAAAT-ATT---GTTACACTTG--TTTGAA--AAG--TATAG--GTAG-----GA
gi|131426 : GAGGG-GGGAT--CAGAAAGTTCGTAGACTTTTG-----CCATAAC--TTTTTTA-T-------T-TATC-------AT-T-GT-A
gi|131427 : GAGGG-GGGAT--CAGAAAGTTTGTAGACTTTTG-----CCATAACTGTTATA---T-------T-TATC-------AT-T-A
gi|131428 : GAGGG-GGGAT--CAGAAAGTTTGTAGACTATTG-----CCATAAC--TTTTTTA-T-------T-TATC-------AT-T-GT-Aatt
gi|131429 : GAGGG-GGGAG--CAGAAAGTTTGTAGACTTTTG-----CCATAAC--TTTTT---T-------
gi|131430 : GAGGA-GGGAT--CAGAAAGTTCATAGACTTTTG-----CCATAAC--TTTTT---TTA-----T-TATC--ATTGTAT-TCAT-AT--AAT-at
gi|131431 : GAAGG-GGGAT--CAGAAAGTTCGTAGACTTTTG-----TCATA-----TTTT---T-------T-TAT
gi|131432 : GAGGG-GGGAT--CAGAAAGTTTGTAGACATTTG-----CCATTAT--TTTTT---T-------T-TAat
gi|131433 : GGGGG-GGGGT--CAGAAAGTATGTAGACATTTG-----CCATAAC----ATT---T-------T-TATC--T----AT-C-AT-
gi|131434 : GAGGA-GGGTT--CAGAAAGTTTGCAGACTTTTG-----CCATACC----ATT---T-------T-TATT--A----AC-C-AT-
gi|131435 : GAAGG-GGGAT--CAGAAAGTTCGTAGACATTTG-----CTTTAAC--T--TT---T-------T-TATT--T----AT-T-AT-
gi|131436 : AGGG-GGGAT--CAGAAAGTTTGTAGACTTTTG-----CCATAAC--TTTTTTA-T-------T-TATC-------AT-T-GT-A
gi|131437 : AGGGCGAGAT--CAGAAAGTTCGTAAACTGTTG-----TCATAAC--CTATT---C----------ATC--------T-C-AT-GC--AAT-G-CACAAT-ATT---ATTA---TTGTATTTGAAAAAAAAATGTTT--ATGG-----GATATATTT-TG---AAAA-TTATAGCATGATGTGTGAACTC-T-T--AAAATAAATAGGTGCGGTTTTCAAACAATAACAGTTAAATATGTCGGGACAAAATGACAACGT
gi|131438 : AGGG-GGTAT--CAGAAAGTTCATAGA-TTTTG-----CCATTAC--TTTTT---T-------
gi|131439 : GGA-GGGAT--CGGAAAATGTGTAGACTTTTG-----CCACAAC--TTTAT---T-------TATATC--A----AT-T-AT-GC--AAT-G-CACAATTATT---GTTA---TTGTATTTGAAATAAA--TGTAT----GA-----GACTTGTATATG---GGAA-TTTTAGCATGATACATCAACTA-T-T--AAAA-AAATAAG-AAGCTATTCAAAGCATAACTGTTAAATAC----GGGCAAAATGACGACATattca
gi|131440 : GGG-GGGAT--CAGAAAGTTCGTAGACTTTTG-----CCATAAC--TT-TT---T-------T-TAT
gi|131441 : GGG-GGGAT--CAGAAAGTTCGTAGACTTTTG-----CCATAAC--TT-TT---T-------T-TAT
gi|131442 : GGG-GGAAT--CAGAAAATCTGTTGACCTTTGACTTGTCATAAC--TTTTT---T-------T-TATCTCA----AT-G-AT-GC--AAT-G-TACACT-ATT---CTTA---TTGTAATT------AA--TGTAT--ATGG-----GATGTATTC-TG---AAAA-TTTGAGCATGATACATCAATTA-T-T--CAAA-AGACAAG-GTGCTATTCAAACCATGACAGTTGTATATGTCGGGGCAAAATGAAGACAT
gi|131443 : GG-GGGTT--CAGAAAGTTTGTAGAC--TTG-----CCATATC--TTTTT---T-------T-TATT--T----AT-C-AT-
gi|131444 : GG-GGGAT--CGGAAAGTTTGTAGACTTTTG-----CCATAGC--TTTTT---T-------
gi|131445 : GA-GGGAT--CAGAAAGTCCGTAGACTTTTG-----CCATAAC--TTATT---T-------A-TAT--------GT-T-A--ACGAAAT---CTCAAG-A-T---GGTA------TACTGGACACAAA--ATTCT--GTAA-----AACATGCTT-TG---Aa
gi|131446 : GG-GGGAT--CAGAAAGTTCATAGACATTTG-----CCATAAC--TTCTT---T-------ttccaatatgtcttcaaatcaact
gi|131447 : G-GGGAT--CAGAAAGTTAGTAGACTTTTG-----CCACAAC--TTTTT---T-------A-TATG--A----TT-T-AT-G---AAT-AACATAAT-ATT---GTGA---T-------AAAATAAA--TGTAT--TTAT-----GACATATTT-TA---AAAT-TCTTGGCATGATATGTCAACTA-T-T--AAAA-AAATAAG-GCGCTATTGAAACCATAACAGTTATGTATGTCGGGGCAAAATGTTGACGTat
gi|131448 : G-GGGAT--CAGAAAGTTAGTAGACTTTTG-----CCACAAC--TTTTT---T-------A-TATG--A----TT-T-AT-G---AAT-AACATAAT-ATT---GTGA---T-------AAAATAAA--TGTAT--TTAT-----GACATATTT-TA---AAAT-TCTTGGCATGATATGTCAACTA-T-T--AAAA-AAATAAG-GCGCTATTGAAACCATAACAGTTATGTATGTCGGGGCAAAATGTTGACGT
gi|131449 : T--CAGAAAATTGGTAGACATTTG-----CCAAAAC--TTTTT---A-------A-TATG--A----AT---AT-G---AAT-A--ACA-T-AGTTTTGTGA---TAGTATTTAAAATAAG--TGGATTTATGACTTATGACATATAT-AA---AAAA-TTCCAGCATGATACGTCAGCTT-T-T--AAAG-AAATAAG-GCGCTATTCATACCATAGCAGTTATATATTTCGGGGCAAAATGTTGAC
gi|131450 : --CGGAACGATCATAGACTTTTA-----CCAGAAC--TTATT---TATTTCAGT-TATC--A----GT-T-AT-AC--AAT-G-CACAAT-ATT---ATTA---TTGTATTTCAAAT---------T--TTGG-----GACAAATTT-TG---AAAA-TTTTGGTATAATACGTCAACTA-T-T--AACA-AAATAAG-GCAATATT
gi|131451 : -------T-TAT---A----ATAT-ATTGT--AAT-A-TATTAT-AGT---GTTT---TTGTATTTGAAATAAA--TGTAT--GTGT-----GACATATTT-AA---AAAATTTTTAGCA--A---ATCAAATA-T-TTAAAAA-AAAAAAT-GCGCTAT
gi|131452 : ttatattataA--TATAT--ATGG-----GACATATTT-TG---AAAA-TTTTAGCTTGATATGTCAACTA-T-T--AAGA-AAATAAG-GCACTATTCAAAGCATAACAGTTAGATATAGCGGGGCAAAATGATGACGT
Alignments
lowQualScore : 111
lowQualScore : 0 11 22222 22 3 000 666666666 7777777 1 1 1 44 1 3 1 2 333 333 22 333 44444 1 333 1 1 1 22 1 1
lowQualScore : . .. ..... .. . ... ......... ....... . . . .. . . . . ... ... .. ... ..... . ... . . . .. . .
lowQualScore : 9 22 11111 99 3 555 333333333 1111111 1 1 1 11 7 6 8 5 222 222 44 111 33333 8 222 9 9 9 66 9 9
consensus : GAGGG-GGGAT--CAGAAAGTTCGTAGACTTTTG-----CCATAAC--TTNTT---T-------T-TATC--A----AT-T-AT-AC--AAT-G-CACAAT-AGT---GTTA---TTGTATTTGAAATAAA--TGTAT--ATGG-----GACATATTT-TG---AAAA-TTTTAGCATGATACGTCAACTA-T-T--AAAA-AAATAAG-GCGCTATTCAAAGCATAGCAGTTAGATATGTCGGGGCAAAATGATGACGT
Reference ( family-469 ) : GAGGG-GGGAT--CAGAAAGTTCGTAGACTTTTG-----CCATAAC--TTNTT---T-------T-TATC--A----AT-T-AT-AC--AAT-G-CACAAT-AGT---GTTA---TTGTATTTGAAATAAA--TGTAT--ATGG-----GACATATTT-TG---AAAA-TTTTAGCATGATACGTCAACTA-T-T--AAAA-AAATAAG-GCGCTATTCAAAGCATAGCAGTTAGATATGTCGGGGCAAAATGATGACGT
gi|131404 : GAGGG-GGG-T--CAGAAAGTTTGTAGACTTTTG-----CTATAAC--TTATT---T-------A-TGTC--A----AT-T-AT-AC--AAT-G-CACAAT-AGT---GTTA---ATGTATTTGAAATAGA--TGTAT--ATGG-----GACATATTT-TG---AAAA-TTTTAGCATGAAACATTAACTA-T-T--AAGA-AAATAAG-GCACTATTCAAAGCATAGCAGTTAGATATGTCGGGGCAAAATGATGACGT
gi|131405 : GAGGG-GGGAT--CAGAAAGTTTGTAGACTTTTG-----CCATAAC--TTATT---T-------T-TATC--A----AT-T-AT-AC--AAT-G-CACAAT-AGT---GTTA---TTGTATTTGAAATAAA--TGTAT--ATGG-----GACATATTT-TG---AAAA-TTTTAGC-----ACGTCAACTA-T-T--GAAA-AAATAAG-GCGCTTGTCAAAGCATAGCAGTTGGTTATGTCGGGGCAAAATGATGACGT
gi|131406 : GAGGG-GGGAT--CAGAAAGTTTGTATACTTTTG-----CCATAAC--T--TT---T-------T-TATT--T----AT-T-AT-
gi|131407 : GAGGG-GGGAT--CAGAAAGTTCGTAGACGTTTG-----CCATTAC--TTATT---T-------A-TATC--A----AT-T-AT-AC--AAT-G-CACAAT-AGT---GTTA---TTGTATTTGAAATAAA--TGTAT--ATGG-----GACATTTTT-TG---AAAA-TTTTAGCATGATACATCAATCT-T-T--AAAA-ACATAAG-GCGCTATTCAAAGCATAGCAATTAGATATGTCGGAGCAAAAGGATGACGT
gi|131408 : GAAGA-GGGAT--CAGAAACTTTGTCGACTTTTG-----CAATAAC--TTATT---T-------A-TATC--A----AT-T-AT-AC--AAT-G-CACAAT-AGT---GTTA---TTTTATTTGAAATAAA--TGTAT--ATGG-----GACATATTT-TG---AAAA-TTTTAGCATGATAAGTCAACTA-T-T--AAAA-AAATAAG-GCGCTAGTCAAAGCATAGCAGTTAGTTATGTTGGGGCAAAATGATGACGT
gi|131409 : GAGGG-GGGAT--CAGAAAGTTTGTAGACTATTG-----CCATAAC--TTTTTTTAT-------T-TATC--A----
gi|131410 : GAGGG-TGGAT--CAGAAAGTTTGAAGACTTTTG-----CCATAAC--TTATT---T-------A-TATC--A----AT-T-AT-AC--AAC-G-CACAAT-AGT---GTTA---TTGTATTTGAAATAAA--TGTAT--ATGG-----GACATATTT-TG---AAAT-TTTTTGCATGATACGTCAACTA-T-T--AAGA-AATTAAG-GCACTGTTCAAAGCAGAGCAGTTAGATATGTCAGGGCAAAATGATGACGTt
gi|131411 : GAGGG-GGGAT--CAGAAAGTTCATAGAATTTTG-----CCATAAC--TTATT---T-------A-TATC--A----AT-T-AT-GC--AAT-G-TACAAT-AGT---GTTA---TTGTACTTGAAATAAA--TGTAT--ATGG-----GACATATTT-TG---AAAA-TTATAGCATGATACATCAACTA-T-T--AAGA-AAATAAG-GCACTATTCAAAGTATAGCAGTTAGATATGTGGGGGCAAACTGATGAGGT
gi|131412 : GAGGG-GGGAT--CAGAAAGTTTGTAGATTTTTG-----CTATAAC--TTATT---T-------A-TATC--A----AT-A-AC-AC--AAT-T-CACAAT-ATT---GTTA---TTGTATTTAAAATAAA--TGTAT--TTGG-----GACATATTT-TG---AAAA-TTTTAGTATGAAACGTCAACTA-T-T--TAGA-AAAAAAG-GCACTATTCAAAACATAGCAGTTAGATATGTCGGGGCAAAACGATGACGT
gi|131413 : GAGGG-GCGAT--CAGAAAGTTTGTAGACTTTTG-----CCATAAC--TTATT---T-------A-CATC--A----AT-T-AT-AC--AAT-G-CACAAT-AGT---GTAA---TTGTATCTTAGATTAA--TATAT--ATGG-----GACATATTT-TG---AAAA-TTTTAGCTTTATACATCAACTA-T-T--AAGA-AAATAAG-GCACTTTTCAAAGCATAGCAGTTAGATATGTCTGGGCAAAATGATGACGT
gi|131414 : GAGGG-GGGGT--CAGAAAGTTCATAGACTTTTA-----CCATATC--TTTTT---T-------
gi|131415 : GAGGG-GGGAT--CAGAAAGTTCGTAGACTTTTG-----CCATAAC--TTATT---T-------A-TATC--A----AC-T-AT-AC--AAT-G-CACAAA-AGA---GTTA---TTGTATTTGAAATAAA--TGTAT--ATGT-----AACATATTT-TG---AAAA-TTTTAGCTTGATACATCAAAAA-TAA--AAAA-AAATAAG-GCGCTATTCAAAGCATGGCAGTTAGTTATGTCGGGGCAAAATGATAACGTat
gi|131416 : GACGG-GAAAT--CAGAAAATTTGTAGACTTTTG-----CCATAAC--TTATT---T-------A-TATC--A----AT-T-AT-AC--AAT-G-AATAAT-TGT---GTCA---TTGTATTTGAAATAAA--TGTAT--ATGG-----GACATATTT-TG---ACAA-TTTTAGTATGATACGTCAATTATT-T--AAAA-AAATAAG-GTGCTATTCAAAGCATAGCAGTTTGTTATATCAGGGCAAAATGATGACGT
gi|131417 : GAGGG-GGGAT--CA-AAAGTTTGTAAACATTTG-----CCATAAC--TTTTTTA-T-------T-TATC-------AT-T-GT-A
gi|131418 : GAGGG-GGGAT--CAGAAAGTTTGTAGACTTTTG-----TTATACCT-TTGTTA--T-------T-TATC--A----AT-
gi|131419 : GAGTG-GGGATATCGGAAAATTCGTAGACTTTTG-----CCATAGT--TTTTT---T-------C-TATC--A----AT-T-AT-GT--CAT-G-CACAA----T---GTTA---TTGTATTTAAATTAAA--TGTAT--AGGA-----GACATATTT-TGAAAAAAA-ATGTAGTATGAAATGTCACCTA-T-T--AAAA-CAAGTAG-GCGCTATTCAAAGCATAACAGTTACATATGTCAGGACAAAATGACGACATgtactctaata
gi|131420 : GAGGG-GGGAT--CAGAAAGTTCGAAGATTCTTA-----CCCTAACA-TTTGT---T-------T-TATT--A----AT-T-AT-
gi|131421 : GAGGG-GGGAT--CAGAAAATTCGTAGACTTTTG-----CCACTAC--TTTTT---T-------A-TAT---G----AT-T-G--ACG-AATAA-CATACT-AGT---GTGA---AAGTATTTGAAATAGG--TGTAT--TTGT-----GACATATTT-TA---ACGA-TCCCAGCATGATACGTCAACTA-T-T--AAGG-AAATAAG-ACGCTATTGAAACCATAACAGTTATGTATGTCGGGGCAAAATGTTGACGT
gi|131422 : GAGGG-GGGAT--CAGAAAATTCGTAGACTTTTG-----CCATTAC--TTTTTTA-T-------T-TACC-------AT-T-GT-A
gi|131423 : GAGGG-GGGCT--CAGAAAGTTTGTAGACTTTTG-----CCACAAC--TTTTTTA-T-------T-TATC--A----
gi|131424 : GAGGG-GGGAT--CAGAAAGTTTGTAGACTTTTG-----CCATAAC--TTTTTTA-T-------T-TA-C--A----AT-T-GT-A
gi|131425 : GAGGG-GGGAT--CAGAAAGTTCGTAGATTTTTG-----CCATAAC--TTATT---T-------A-TATC--A----GT-T-AT-AC--AAT-G-CAAAAT-ATT---GTTACACTTG--TTTGAA--AAG--TATAG--GTAG-----GA
gi|131426 : GAGGG-GGGAT--CAGAAAGTTCGTAGACTTTTG-----CCATAAC--TTTTTTA-T-------T-TATC-------AT-T-GT-A
gi|131427 : GAGGG-GGGAT--CAGAAAGTTTGTAGACTTTTG-----CCATAACTGTTATA---T-------T-TATC-------AT-T-A
gi|131428 : GAGGG-GGGAT--CAGAAAGTTTGTAGACTATTG-----CCATAAC--TTTTTTA-T-------T-TATC-------AT-T-GT-Aatt
gi|131429 : GAGGG-GGGAG--CAGAAAGTTTGTAGACTTTTG-----CCATAAC--TTTTT---T-------
gi|131430 : GAGGA-GGGAT--CAGAAAGTTCATAGACTTTTG-----CCATAAC--TTTTT---TTA-----T-TATC--ATTGTAT-TCAT-AT--AAT-at
gi|131431 : GAAGG-GGGAT--CAGAAAGTTCGTAGACTTTTG-----TCATA-----TTTT---T-------T-TAT
gi|131432 : GAGGG-GGGAT--CAGAAAGTTTGTAGACATTTG-----CCATTAT--TTTTT---T-------T-TAat
gi|131433 : GGGGG-GGGGT--CAGAAAGTATGTAGACATTTG-----CCATAAC----ATT---T-------T-TATC--T----AT-C-AT-
gi|131434 : GAGGA-GGGTT--CAGAAAGTTTGCAGACTTTTG-----CCATACC----ATT---T-------T-TATT--A----AC-C-AT-
gi|131435 : GAAGG-GGGAT--CAGAAAGTTCGTAGACATTTG-----CTTTAAC--T--TT---T-------T-TATT--T----AT-T-AT-
gi|131436 : AGGG-GGGAT--CAGAAAGTTTGTAGACTTTTG-----CCATAAC--TTTTTTA-T-------T-TATC-------AT-T-GT-A
gi|131437 : AGGGCGAGAT--CAGAAAGTTCGTAAACTGTTG-----TCATAAC--CTATT---C----------ATC--------T-C-AT-GC--AAT-G-CACAAT-ATT---ATTA---TTGTATTTGAAAAAAAAATGTTT--ATGG-----GATATATTT-TG---AAAA-TTATAGCATGATGTGTGAACTC-T-T--AAAATAAATAGGTGCGGTTTTCAAACAATAACAGTTAAATATGTCGGGACAAAATGACAACGT
gi|131438 : AGGG-GGTAT--CAGAAAGTTCATAGA-TTTTG-----CCATTAC--TTTTT---T-------
gi|131439 : GGA-GGGAT--CGGAAAATGTGTAGACTTTTG-----CCACAAC--TTTAT---T-------TATATC--A----AT-T-AT-GC--AAT-G-CACAATTATT---GTTA---TTGTATTTGAAATAAA--TGTAT----GA-----GACTTGTATATG---GGAA-TTTTAGCATGATACATCAACTA-T-T--AAAA-AAATAAG-AAGCTATTCAAAGCATAACTGTTAAATAC----GGGCAAAATGACGACATattca
gi|131440 : GGG-GGGAT--CAGAAAGTTCGTAGACTTTTG-----CCATAAC--TT-TT---T-------T-TAT
gi|131441 : GGG-GGGAT--CAGAAAGTTCGTAGACTTTTG-----CCATAAC--TT-TT---T-------T-TAT
gi|131442 : GGG-GGAAT--CAGAAAATCTGTTGACCTTTGACTTGTCATAAC--TTTTT---T-------T-TATCTCA----AT-G-AT-GC--AAT-G-TACACT-ATT---CTTA---TTGTAATT------AA--TGTAT--ATGG-----GATGTATTC-TG---AAAA-TTTGAGCATGATACATCAATTA-T-T--CAAA-AGACAAG-GTGCTATTCAAACCATGACAGTTGTATATGTCGGGGCAAAATGAAGACAT
gi|131443 : GG-GGGTT--CAGAAAGTTTGTAGAC--TTG-----CCATATC--TTTTT---T-------T-TATT--T----AT-C-AT-
gi|131444 : GG-GGGAT--CGGAAAGTTTGTAGACTTTTG-----CCATAGC--TTTTT---T-------
gi|131445 : GA-GGGAT--CAGAAAGTCCGTAGACTTTTG-----CCATAAC--TTATT---T-------A-TAT--------GT-T-A--ACGAAAT---CTCAAG-A-T---GGTA------TACTGGACACAAA--ATTCT--GTAA-----AACATGCTT-TG---Aa
gi|131446 : GG-GGGAT--CAGAAAGTTCATAGACATTTG-----CCATAAC--TTCTT---T-------ttccaatatgtcttcaaatcaact
gi|131447 : G-GGGAT--CAGAAAGTTAGTAGACTTTTG-----CCACAAC--TTTTT---T-------A-TATG--A----TT-T-AT-G---AAT-AACATAAT-ATT---GTGA---T-------AAAATAAA--TGTAT--TTAT-----GACATATTT-TA---AAAT-TCTTGGCATGATATGTCAACTA-T-T--AAAA-AAATAAG-GCGCTATTGAAACCATAACAGTTATGTATGTCGGGGCAAAATGTTGACGTat
gi|131448 : G-GGGAT--CAGAAAGTTAGTAGACTTTTG-----CCACAAC--TTTTT---T-------A-TATG--A----TT-T-AT-G---AAT-AACATAAT-ATT---GTGA---T-------AAAATAAA--TGTAT--TTAT-----GACATATTT-TA---AAAT-TCTTGGCATGATATGTCAACTA-T-T--AAAA-AAATAAG-GCGCTATTGAAACCATAACAGTTATGTATGTCGGGGCAAAATGTTGACGT
gi|131449 : T--CAGAAAATTGGTAGACATTTG-----CCAAAAC--TTTTT---A-------A-TATG--A----AT---AT-G---AAT-A--ACA-T-AGTTTTGTGA---TAGTATTTAAAATAAG--TGGATTTATGACTTATGACATATAT-AA---AAAA-TTCCAGCATGATACGTCAGCTT-T-T--AAAG-AAATAAG-GCGCTATTCATACCATAGCAGTTATATATTTCGGGGCAAAATGTTGAC
gi|131450 : --CGGAACGATCATAGACTTTTA-----CCAGAAC--TTATT---TATTTCAGT-TATC--A----GT-T-AT-AC--AAT-G-CACAAT-ATT---ATTA---TTGTATTTCAAAT---------T--TTGG-----GACAAATTT-TG---AAAA-TTTTGGTATAATACGTCAACTA-T-T--AACA-AAATAAG-GCAATATT
gi|131451 : -------T-TAT---A----ATAT-ATTGT--AAT-A-TATTAT-AGT---GTTT---TTGTATTTGAAATAAA--TGTAT--GTGT-----GACATATTT-AA---AAAATTTTTAGCA--A---ATCAAATA-T-TTAAAAA-AAAAAAT-GCGCTAT
gi|131452 : ttatattataA--TATAT--ATGG-----GACATATTT-TG---AAAA-TTTTAGCTTGATATGTCAACTA-T-T--AAGA-AAATAAG-GCACTATTCAAAGCATAACAGTTAGATATAGCGGGGCAAAATGATGACGT
blockSeqs : AT ACTTG TG A TTA ATTTCAGT ATTGT A C T GA A A T G TTT CAC AA TTA CTTAT A AAA T T A TA T T
blockSeqs : . . T A TA TAT TCA . . . G . A . G . . . A . . . . . . . . .
blockSeqs : . . A A TA TA A . . . . . . . G . . . A . . . . . . . . .
blockSeqs : . . . T TA T T . . . . . . . G . . . A . . . . . . . . .
blockSeqs : . . . A TA T A . . . . . . . G . . . A . . . . . . . . .
blockSeqs : . . . A TA A A . . . . . . . T . . . A . . . . . . . . .
blockSeqs : . . . A TA A A . . . . . . . G . . . T . . . . . . . . .
blockSeqs : . . . A TA T A . . . . . . . G . . . A . . . . . . . . .
blockSeqs : . . . T A A A . . . . . . . G . . . A . . . . . . . . .
blockSeqs : . . . A . A A . . . . . . . G . . . A . . . . . . . . .
blockSeqs : . . . A . A A . . . . . . . T . . . A . . . . . . . . .
blockSeqs : . . . T . A A . . . . . . . T . . . T . . . . . . . . .
blockSeqs : . . . G . A A . . . . . . . T . . . G . . . . . . . . .
blockSeqs : . . . T . A A . . . . . . . T . . . A . . . . . . . . .
blockSeqs : . . . T . T A . . . . . . . T . . . A . . . . . . . . .
blockSeqs : . . . T . T A . . . . . . . T . . . G . . . . . . . . .
blockSeqs : . . . T . C G . . . . . . . G . . . T . . . . . . . . .
blockSeqs : . . . T . T A . . . . . . . T . . . T . . . . . . . . .
blockSeqs : . . . T . A A . . . . . . . G . . . T . . . . . . . . .
blockSeqs : . . . A . T A . . . . . . . . . . . G . . . . . . . . .
blockSeqs : . . . T . T T . . . . . . . . . . . A . . .
blockSeqs : . . . A . T A . . . . . . . .
blockSeqs : . . . T . A T . . .
blockSeqs : . . . T . T A . . .
blockSeqs : . . . T . T T . . .
blockSeqs : . . . T . T A . . .
blockSeqs : . . . T . T A . . .
blockSeqs : . . . A . T A . . .
blockSeqs : . . . A . T A . . .
blockSeqs : . . . T . T A . . .
blockSeqs : . . . A . T . . . .
blockSeqs : . . . T . T . . . .
blockSeqs : . . . T . T . . . .
blockSeqs : . . . T . T . . . .
blockSeqs : . . . T . T . . .
blockSeqs : . . . T . T . .
blockSeqs : . . . A . A .
blockSeqs : . . . C . A .
blockSeqs : . . . T . A
blockSeqs : . . . T . A
blockSeqs : . . . T . T
blockSeqs : . . . A . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqCons :
originalCons : GAGGG-GGGAT--CAGAAAGTTCGTAGACTTTTG-----CCATAAC--TTNTT---T-------T-TATC--A----AT-T-AT-AC--AAT-G-CACAAT-AGT---GTTA---TTGTATTTGAAATAAA--TGTAT--ATGG-----GACATATTT-TG---AAAA-TTTTAGCATGATACGTCAACTA-T-T--AAAA-AAATAAG-GCGCTATTCAAAGCATAGCAGTTAGATATGTCGGGGCAAAATGATGACGT
finalCons : GAGGG-GGGAT--CAGAAAGTTCGTAGACTTTTG-----CCATAAC--TTNTT---T-------T-TATC--A----AT-T-AT-AC--AAT-G-CACAAT-AGT---GTTA---TTGTATTTGAAATAAA--TGTAT--ATGG-----GACATATTT-TG---AAAA-TTTTAGCATGATACGTCAACTA-T-T--AAAA-AAATAAG-GCGCTATTCAAAGCATAGCAGTTAGATATGTCGGGGCAAAATGATGACGT
Alignments
lowQualScore : 111
lowQualScore : 0 11 22222 22 3 000 666666666 7777777 1 1 1 44 1 3 1 2 333 333 22 333 44444 1 333 1 1 1 22 1 1
lowQualScore : . .. ..... .. . ... ......... ....... . . . .. . . . . ... ... .. ... ..... . ... . . . .. . .
lowQualScore : 9 22 11111 99 3 555 333333333 1111111 1 1 1 11 7 6 8 5 222 222 44 111 33333 8 222 9 9 9 66 9 9
consensus : GAGGG-GGGAT--CAGAAAGTTCGTAGACTTTTG-----CCATAAC--TTNTT---T-------T-TATC--A----AT-T-AT-AC--AAT-G-CACAAT-AGT---GTTA---TTGTATTTGAAATAAA--TGTAT--ATGG-----GACATATTT-TG---AAAA-TTTTAGCATGATACGTCAACTA-T-T--AAAA-AAATAAG-GCGCTATTCAAAGCATAGCAGTTAGATATGTCGGGGCAAAATGATGACGT
Reference ( family-469 ) : GAGGG-GGGAT--CAGAAAGTTCGTAGACTTTTG-----CCATAAC--TTNTT---T-------T-TATC--A----AT-T-AT-AC--AAT-G-CACAAT-AGT---GTTA---TTGTATTTGAAATAAA--TGTAT--ATGG-----GACATATTT-TG---AAAA-TTTTAGCATGATACGTCAACTA-T-T--AAAA-AAATAAG-GCGCTATTCAAAGCATAGCAGTTAGATATGTCGGGGCAAAATGATGACGT
gi|131404 : GAGGG-GGG-T--CAGAAAGTTTGTAGACTTTTG-----CTATAAC--TTATT---T-------A-TGTC--A----AT-T-AT-AC--AAT-G-CACAAT-AGT---GTTA---ATGTATTTGAAATAGA--TGTAT--ATGG-----GACATATTT-TG---AAAA-TTTTAGCATGAAACATTAACTA-T-T--AAGA-AAATAAG-GCACTATTCAAAGCATAGCAGTTAGATATGTCGGGGCAAAATGATGACGT
gi|131405 : GAGGG-GGGAT--CAGAAAGTTTGTAGACTTTTG-----CCATAAC--TTATT---T-------T-TATC--A----AT-T-AT-AC--AAT-G-CACAAT-AGT---GTTA---TTGTATTTGAAATAAA--TGTAT--ATGG-----GACATATTT-TG---AAAA-TTTTAGC-----ACGTCAACTA-T-T--GAAA-AAATAAG-GCGCTTGTCAAAGCATAGCAGTTGGTTATGTCGGGGCAAAATGATGACGT
gi|131406 : GAGGG-GGGAT--CAGAAAGTTTGTATACTTTTG-----CCATAAC--T--TT---T-------T-TATT--T----AT-T-AT-
gi|131407 : GAGGG-GGGAT--CAGAAAGTTCGTAGACGTTTG-----CCATTAC--TTATT---T-------A-TATC--A----AT-T-AT-AC--AAT-G-CACAAT-AGT---GTTA---TTGTATTTGAAATAAA--TGTAT--ATGG-----GACATTTTT-TG---AAAA-TTTTAGCATGATACATCAATCT-T-T--AAAA-ACATAAG-GCGCTATTCAAAGCATAGCAATTAGATATGTCGGAGCAAAAGGATGACGT
gi|131408 : GAAGA-GGGAT--CAGAAACTTTGTCGACTTTTG-----CAATAAC--TTATT---T-------A-TATC--A----AT-T-AT-AC--AAT-G-CACAAT-AGT---GTTA---TTTTATTTGAAATAAA--TGTAT--ATGG-----GACATATTT-TG---AAAA-TTTTAGCATGATAAGTCAACTA-T-T--AAAA-AAATAAG-GCGCTAGTCAAAGCATAGCAGTTAGTTATGTTGGGGCAAAATGATGACGT
gi|131409 : GAGGG-GGGAT--CAGAAAGTTTGTAGACTATTG-----CCATAAC--TTTTTTTAT-------T-TATC--A----
gi|131410 : GAGGG-TGGAT--CAGAAAGTTTGAAGACTTTTG-----CCATAAC--TTATT---T-------A-TATC--A----AT-T-AT-AC--AAC-G-CACAAT-AGT---GTTA---TTGTATTTGAAATAAA--TGTAT--ATGG-----GACATATTT-TG---AAAT-TTTTTGCATGATACGTCAACTA-T-T--AAGA-AATTAAG-GCACTGTTCAAAGCAGAGCAGTTAGATATGTCAGGGCAAAATGATGACGTt
gi|131411 : GAGGG-GGGAT--CAGAAAGTTCATAGAATTTTG-----CCATAAC--TTATT---T-------A-TATC--A----AT-T-AT-GC--AAT-G-TACAAT-AGT---GTTA---TTGTACTTGAAATAAA--TGTAT--ATGG-----GACATATTT-TG---AAAA-TTATAGCATGATACATCAACTA-T-T--AAGA-AAATAAG-GCACTATTCAAAGTATAGCAGTTAGATATGTGGGGGCAAACTGATGAGGT
gi|131412 : GAGGG-GGGAT--CAGAAAGTTTGTAGATTTTTG-----CTATAAC--TTATT---T-------A-TATC--A----AT-A-AC-AC--AAT-T-CACAAT-ATT---GTTA---TTGTATTTAAAATAAA--TGTAT--TTGG-----GACATATTT-TG---AAAA-TTTTAGTATGAAACGTCAACTA-T-T--TAGA-AAAAAAG-GCACTATTCAAAACATAGCAGTTAGATATGTCGGGGCAAAACGATGACGT
gi|131413 : GAGGG-GCGAT--CAGAAAGTTTGTAGACTTTTG-----CCATAAC--TTATT---T-------A-CATC--A----AT-T-AT-AC--AAT-G-CACAAT-AGT---GTAA---TTGTATCTTAGATTAA--TATAT--ATGG-----GACATATTT-TG---AAAA-TTTTAGCTTTATACATCAACTA-T-T--AAGA-AAATAAG-GCACTTTTCAAAGCATAGCAGTTAGATATGTCTGGGCAAAATGATGACGT
gi|131414 : GAGGG-GGGGT--CAGAAAGTTCATAGACTTTTA-----CCATATC--TTTTT---T-------
gi|131415 : GAGGG-GGGAT--CAGAAAGTTCGTAGACTTTTG-----CCATAAC--TTATT---T-------A-TATC--A----AC-T-AT-AC--AAT-G-CACAAA-AGA---GTTA---TTGTATTTGAAATAAA--TGTAT--ATGT-----AACATATTT-TG---AAAA-TTTTAGCTTGATACATCAAAAA-TAA--AAAA-AAATAAG-GCGCTATTCAAAGCATGGCAGTTAGTTATGTCGGGGCAAAATGATAACGTat
gi|131416 : GACGG-GAAAT--CAGAAAATTTGTAGACTTTTG-----CCATAAC--TTATT---T-------A-TATC--A----AT-T-AT-AC--AAT-G-AATAAT-TGT---GTCA---TTGTATTTGAAATAAA--TGTAT--ATGG-----GACATATTT-TG---ACAA-TTTTAGTATGATACGTCAATTATT-T--AAAA-AAATAAG-GTGCTATTCAAAGCATAGCAGTTTGTTATATCAGGGCAAAATGATGACGT
gi|131417 : GAGGG-GGGAT--CA-AAAGTTTGTAAACATTTG-----CCATAAC--TTTTTTA-T-------T-TATC-------AT-T-GT-A
gi|131418 : GAGGG-GGGAT--CAGAAAGTTTGTAGACTTTTG-----TTATACCT-TTGTTA--T-------T-TATC--A----AT-
gi|131419 : GAGTG-GGGATATCGGAAAATTCGTAGACTTTTG-----CCATAGT--TTTTT---T-------C-TATC--A----AT-T-AT-GT--CAT-G-CACAA----T---GTTA---TTGTATTTAAATTAAA--TGTAT--AGGA-----GACATATTT-TGAAAAAAA-ATGTAGTATGAAATGTCACCTA-T-T--AAAA-CAAGTAG-GCGCTATTCAAAGCATAACAGTTACATATGTCAGGACAAAATGACGACATgtactctaata
gi|131420 : GAGGG-GGGAT--CAGAAAGTTCGAAGATTCTTA-----CCCTAACA-TTTGT---T-------T-TATT--A----AT-T-AT-
gi|131421 : GAGGG-GGGAT--CAGAAAATTCGTAGACTTTTG-----CCACTAC--TTTTT---T-------A-TAT---G----AT-T-G--ACG-AATAA-CATACT-AGT---GTGA---AAGTATTTGAAATAGG--TGTAT--TTGT-----GACATATTT-TA---ACGA-TCCCAGCATGATACGTCAACTA-T-T--AAGG-AAATAAG-ACGCTATTGAAACCATAACAGTTATGTATGTCGGGGCAAAATGTTGACGT
gi|131422 : GAGGG-GGGAT--CAGAAAATTCGTAGACTTTTG-----CCATTAC--TTTTTTA-T-------T-TACC-------AT-T-GT-A
gi|131423 : GAGGG-GGGCT--CAGAAAGTTTGTAGACTTTTG-----CCACAAC--TTTTTTA-T-------T-TATC--A----
gi|131424 : GAGGG-GGGAT--CAGAAAGTTTGTAGACTTTTG-----CCATAAC--TTTTTTA-T-------T-TA-C--A----AT-T-GT-A
gi|131425 : GAGGG-GGGAT--CAGAAAGTTCGTAGATTTTTG-----CCATAAC--TTATT---T-------A-TATC--A----GT-T-AT-AC--AAT-G-CAAAAT-ATT---GTTACACTTG--TTTGAA--AAG--TATAG--GTAG-----GA
gi|131426 : GAGGG-GGGAT--CAGAAAGTTCGTAGACTTTTG-----CCATAAC--TTTTTTA-T-------T-TATC-------AT-T-GT-A
gi|131427 : GAGGG-GGGAT--CAGAAAGTTTGTAGACTTTTG-----CCATAACTGTTATA---T-------T-TATC-------AT-T-A
gi|131428 : GAGGG-GGGAT--CAGAAAGTTTGTAGACTATTG-----CCATAAC--TTTTTTA-T-------T-TATC-------AT-T-GT-Aatt
gi|131429 : GAGGG-GGGAG--CAGAAAGTTTGTAGACTTTTG-----CCATAAC--TTTTT---T-------
gi|131430 : GAGGA-GGGAT--CAGAAAGTTCATAGACTTTTG-----CCATAAC--TTTTT---TTA-----T-TATC--ATTGTAT-TCAT-AT--AAT-at
gi|131431 : GAAGG-GGGAT--CAGAAAGTTCGTAGACTTTTG-----TCATA-----TTTT---T-------T-TAT
gi|131432 : GAGGG-GGGAT--CAGAAAGTTTGTAGACATTTG-----CCATTAT--TTTTT---T-------T-TAat
gi|131433 : GGGGG-GGGGT--CAGAAAGTATGTAGACATTTG-----CCATAAC----ATT---T-------T-TATC--T----AT-C-AT-
gi|131434 : GAGGA-GGGTT--CAGAAAGTTTGCAGACTTTTG-----CCATACC----ATT---T-------T-TATT--A----AC-C-AT-
gi|131435 : GAAGG-GGGAT--CAGAAAGTTCGTAGACATTTG-----CTTTAAC--T--TT---T-------T-TATT--T----AT-T-AT-
gi|131436 : AGGG-GGGAT--CAGAAAGTTTGTAGACTTTTG-----CCATAAC--TTTTTTA-T-------T-TATC-------AT-T-GT-A
gi|131437 : AGGGCGAGAT--CAGAAAGTTCGTAAACTGTTG-----TCATAAC--CTATT---C----------ATC--------T-C-AT-GC--AAT-G-CACAAT-ATT---ATTA---TTGTATTTGAAAAAAAAATGTTT--ATGG-----GATATATTT-TG---AAAA-TTATAGCATGATGTGTGAACTC-T-T--AAAATAAATAGGTGCGGTTTTCAAACAATAACAGTTAAATATGTCGGGACAAAATGACAACGT
gi|131438 : AGGG-GGTAT--CAGAAAGTTCATAGA-TTTTG-----CCATTAC--TTTTT---T-------
gi|131439 : GGA-GGGAT--CGGAAAATGTGTAGACTTTTG-----CCACAAC--TTTAT---T-------TATATC--A----AT-T-AT-GC--AAT-G-CACAATTATT---GTTA---TTGTATTTGAAATAAA--TGTAT----GA-----GACTTGTATATG---GGAA-TTTTAGCATGATACATCAACTA-T-T--AAAA-AAATAAG-AAGCTATTCAAAGCATAACTGTTAAATAC----GGGCAAAATGACGACATattca
gi|131440 : GGG-GGGAT--CAGAAAGTTCGTAGACTTTTG-----CCATAAC--TT-TT---T-------T-TAT
gi|131441 : GGG-GGGAT--CAGAAAGTTCGTAGACTTTTG-----CCATAAC--TT-TT---T-------T-TAT
gi|131442 : GGG-GGAAT--CAGAAAATCTGTTGACCTTTGACTTGTCATAAC--TTTTT---T-------T-TATCTCA----AT-G-AT-GC--AAT-G-TACACT-ATT---CTTA---TTGTAATT------AA--TGTAT--ATGG-----GATGTATTC-TG---AAAA-TTTGAGCATGATACATCAATTA-T-T--CAAA-AGACAAG-GTGCTATTCAAACCATGACAGTTGTATATGTCGGGGCAAAATGAAGACAT
gi|131443 : GG-GGGTT--CAGAAAGTTTGTAGAC--TTG-----CCATATC--TTTTT---T-------T-TATT--T----AT-C-AT-
gi|131444 : GG-GGGAT--CGGAAAGTTTGTAGACTTTTG-----CCATAGC--TTTTT---T-------
gi|131445 : GA-GGGAT--CAGAAAGTCCGTAGACTTTTG-----CCATAAC--TTATT---T-------A-TAT--------GT-T-A--ACGAAAT---CTCAAG-A-T---GGTA------TACTGGACACAAA--ATTCT--GTAA-----AACATGCTT-TG---Aa
gi|131446 : GG-GGGAT--CAGAAAGTTCATAGACATTTG-----CCATAAC--TTCTT---T-------ttccaatatgtcttcaaatcaact
gi|131447 : G-GGGAT--CAGAAAGTTAGTAGACTTTTG-----CCACAAC--TTTTT---T-------A-TATG--A----TT-T-AT-G---AAT-AACATAAT-ATT---GTGA---T-------AAAATAAA--TGTAT--TTAT-----GACATATTT-TA---AAAT-TCTTGGCATGATATGTCAACTA-T-T--AAAA-AAATAAG-GCGCTATTGAAACCATAACAGTTATGTATGTCGGGGCAAAATGTTGACGTat
gi|131448 : G-GGGAT--CAGAAAGTTAGTAGACTTTTG-----CCACAAC--TTTTT---T-------A-TATG--A----TT-T-AT-G---AAT-AACATAAT-ATT---GTGA---T-------AAAATAAA--TGTAT--TTAT-----GACATATTT-TA---AAAT-TCTTGGCATGATATGTCAACTA-T-T--AAAA-AAATAAG-GCGCTATTGAAACCATAACAGTTATGTATGTCGGGGCAAAATGTTGACGT
gi|131449 : T--CAGAAAATTGGTAGACATTTG-----CCAAAAC--TTTTT---A-------A-TATG--A----AT---AT-G---AAT-A--ACA-T-AGTTTTGTGA---TAGTATTTAAAATAAG--TGGATTTATGACTTATGACATATAT-AA---AAAA-TTCCAGCATGATACGTCAGCTT-T-T--AAAG-AAATAAG-GCGCTATTCATACCATAGCAGTTATATATTTCGGGGCAAAATGTTGAC
gi|131450 : --CGGAACGATCATAGACTTTTA-----CCAGAAC--TTATT---TATTTCAGT-TATC--A----GT-T-AT-AC--AAT-G-CACAAT-ATT---ATTA---TTGTATTTCAAAT---------T--TTGG-----GACAAATTT-TG---AAAA-TTTTGGTATAATACGTCAACTA-T-T--AACA-AAATAAG-GCAATATT
gi|131451 : -------T-TAT---A----ATAT-ATTGT--AAT-A-TATTAT-AGT---GTTT---TTGTATTTGAAATAAA--TGTAT--GTGT-----GACATATTT-AA---AAAATTTTTAGCA--A---ATCAAATA-T-TTAAAAA-AAAAAAT-GCGCTAT
gi|131452 : ttatattataA--TATAT--ATGG-----GACATATTT-TG---AAAA-TTTTAGCTTGATATGTCAACTA-T-T--AAGA-AAATAAG-GCACTATTCAAAGCATAACAGTTAGATATAGCGGGGCAAAATGATGACGT