lowQualScore : 11 22222222222222222222 111111 222 1111 222 1 1 111111 11 222222222 111111111111 1 1
lowQualScore : 44 33 6666 33333333333333333333 2 2 2 111111 888 33 2 2 444 4 2 2 2222 222 33 2 222 444 2 5 2 2 44 6 0 5 5 222 2 222222 1 1 888 22 7777 66 22 6 88888888 1 1 1 1 1 1 11 11 999999999 888888888888 999999 2 0 1 2 5 6 666 222 99999 11 33 4 4 22
lowQualScore : .. .. .... .................... . . . ...... ... .. . . ... . . . .... ... .. . ... ... . . . . .. . . . . ... . ...... . . ... .. .... .. .. . ........ . . . . . . .. .. ......... ............ ...... . . . . . . ... ... ..... .. .. . . ..
lowQualScore : 55 99 1111 00000000000000000000 9 9 9 666666 777 99 7 7 222 8 7 7 8888 999 77 5 666 111 2 0 1 0 88 7 3 2 8 999 8 555555 7 6 444 22 6666 22 22 7 11111111 2 6 2 2 2 2 66 77 333333333 000000000000 111111 7 4 2 4 4 8 444 111 55555 88 77 3 3 00
consensus : CCGGAACCTCT-ATAATTTCTGACA--TGCG----CAA--NCGA-AAT--AT-TT-TATAAC-T-T-T-TG---ACCTTGACCTGT-ATTGCATCAG--TTTTCAGC-AGACG-TG-TTTGAAATCGATATT-CGTAAAC-AAACCTAGC---NTTTGTCA-AG--GT-TTTATGT-A-AA---CTGAAAAA-TGGACATAGTGA-GAAATACA-TTTTTT--CAGGTCTGTATCATAAAATG-ACTTTCTTACT---TGTATCGGAAGC------A-TTA-TT---T--TT-GA-TATTTTTCA-TTGCAT--TCAAT-GACCAC-------GTGGAT-ACTGTTTGTAAAT-A-T-TG-CC--AA--T---T-----GTG-CA-G-------GAAGTTGA-----AATACGCGTGCGCGATATTCGTA-ATTCTCGGAAGTGATCGAATTCA---G---GTNATGNTCGAAA--ACA--GGTTAC-G-GCACC--ATAC
Reference ( gi|144737 ) : CCGGAACCTCG-ATAATTTCTGACA--TGCA----CAA--GCAA-AAT--AT-TT-TGTAAC-T-T-T-CG---ACCTTGACCTGT-ATTGCATCAG--TTTTCAGC-AGACG-TG-TATGAAATCGATATT-CGTAAAC-AAACCTAGC---ATTTGTGG-AG--GT-TTTATGT-A-AA---CTGAAAAA-TGGACCTAGTGA-GAAATACA-TTTTTT--CAGGTCTGTACCATAAAATG-ACTTTCTCACT---TCTATCGGAAGC------A-TTA-TT---T--TT-GA-TATTTTTCT-TTGCAT--TCAAT-GACCAT-------GTGGAT-ACTGTTTGTAAAT-A-T-TG-CC--AA--T---A-----GTG-TA-T-------GAAGTTGA-----AATACGCTTGCGCGATATTCGTA-ATTATGGGAAGTGATCGATTTCA---G---GTGACGCTCGAAA--ACA--GGTTAC-G-GCACC--ATAC
gi|144736 : CCGGAACCGCT-ATAATTTCTGATA--TGCA----CAA--GCGA-AAT--AT-TT-TATAAC-T-T-T-TG---ACCTTGACCTGT-ATTGCATCAG--CTTTCAGC-AGACA-TG-TTTGAAATCAATATT-CGTAAAC-AAACCTAGC---ATTTGTCA-AG--GT-TTTATGT-A-AA---CTGAAAAA-TGGACATAGTGA-AAAATACAATTTTTT--CAGGTCTTTACCATAAAATG-ACTTTCTCACT---TGTATCGGAAGC------A-TTA-CT---T--TT-GA-TATTTTTCA-TTGCAT--TCAAT-GATCAC-------GTGGAT-ACTGTTTGTAAAT-A-T-TG-CC--AA--T---T-----GTG-CA-G-------TAAGTTGA-----AATACGCGTGCACGAAATTCGTA-ATTATGGGAAGTGATCGATTTCA---G---GTGACACTCAAAA--ACA--GGTTAC-G-GCACC--ATA
gi|144738 : CCGGAACCTCT-GTAATTTCTGACA--TGCG----CAA--GCGA-AAT--AT-TT-TATAAC-T-T-T-TG---ACCTTGACCTGT-ATTGCATCAG--TTTTCAGC-AGACG-TG-TTTGAAACTGATATT-TTTAAAT-AAACCTAGC---ATTTGTCG-AG--GT-TTTATGT-T-AA---CTGAAAAA-T------------GAAATACA-TTTTTT--CAGGTCTGTACCATAAAAAG-ACTTTCTCACT---TGTATCGGAAGC------A-TTATTT---T--TT-TA-TATTTTTCT-TTGTAT--TCAAA-GACCCC-------GTGGAT-ACTGTTTGTGAAT-A-T-TG-CC--AA--T----------TG-------------------------------------CGATATTCGTA-ATTATGGGAATTGGTCGATTTCA---G---GTTACGCTCGAAA--ACA--GGTTAC-G-ACACC--ATAC
gi|144739 : CCGGAAT-TCATATAATTTCTGAAA--TGCG----C----------AT------------AC-T-T-T-TG---ACCTTGACCTGT-ATTGCATCAG--TTTTCCAC-AGACG-TG-ATTGGAATCGATATC-CGTAAAC-AAACCTAGC---GTTTATCA-CA--GC-TTTATGT-A-AA---CTGAAAAT-TGGACATAGTGA-GAAA-AAA-AATGTT--CAGGTCTGTATCATAAAATG-ACTTTCTTACT---TATATCGGAAGC------A-TTA-TT---T--TTCTA-TATTTAACA-CTCCAT--TCAAT-GATCAC-------GTGGAT-ACTATTTGT-AAT-A-T-TG-CC--AA--T---T-----GTG-CT-G-------GAAGTCGA-----AATACGCTTGCGCGATATTCATA-ATTCTCGGAAGTGATCGAATTCT---G---GTCGTGATCG-AA--ACA--GGTTAC-A-GCACC--ATAC
gi|144742 : CCGGAACCTCA-A-AAGATCTGACA--TGCG----CAGTCGCC----T--ATGTT-TATAAC-T-TAT-TG---ACCTTGACCTATTATGGCATCAG--TTTTCAGC-AGACG-TG----------GAT--C-CGTAAAC-AAACCTAGC---TTTTGTCA-TG--GT-TTTATGT-A-AA---CTCAAATA-TGGACATAGTGA-GAAATACA-ATTTTT--CAG--------CA---------CTTTCTTACT---TGGACAGGAAAC------A-TTA-TT---T--TT-GA-TAGTTTTTA-CTGCTT--TCAAT-GACCAC-------GTGGAT-AACATTTGT---T-A-T-AA-CC--TT--T---------GTG-CA-T-------GAAGCTGA-----AATACGTTTGTGCGATATTCGTA-GTTCTCCGAAGAGATCGAATTCA---GACTGTGAA---CGAAA--ACA--GGTTAG-G-GCACCCTATAC
gi|144743 : CTGGAACATCT-ATACTTTCTGACA--TGCG----CAG--TCGA-CAT--GT-TA--ATAGC-T-T-CATG---ACCTTAACTAGT-TATGCATCAG--TTTTCAGC-AGAAG-T--CATGGAATTGATATT-CGTTAAC-AAACCTTGC---TTTTGTCA-TG--GT-TTTAGGT-T-AA---C-----AA-TAGACATAGTGA-GAAATATA-TTTTT---CAGATCTGTAACA---AATG-ACTTTCTTACT---TATACCGGAGAC------A-TTA-TA---T--TC-TA-TATTCATCA-TTGCAT--TCAAT-GCCCAT-------ATGGAT-ACTGTTTG-AAATCA-T-TG------A--T---ATTTT-GTG-CA-G-------GAAGTTG-------ATACCCTTGCGCAATATTCATA-ATTCTCGGAAGTGATCGAATTCA---G---GT----CTCGA
gi|144740 : CTGAAACCTCT-ATAATTTCTGACA--TGCA----CAA--CCAA-AAT--AT-TT-TATAAC-T-T-T-TG---ACCTTGACCTGT-ATTGCATTAC--TTTTCAGC-AGTCG-TG-TTTGAAATCGATATT--GTGAAC-
gi|144741 : CCGGAACTTCT-ATAATTTCTCATA--TGCT----CAG--TCG----TTCAT-GTGTATAAC-T-T-T-TT---ACATTGACCGAT-TATGAATCAG--TTTTCAGC-AGAAG-TGGTTTGGA-TTGACACT-TTTAAAC-AAACCTAGC---TATTATCA-AC--CT-TTTAAGT-A-AA---CTGAAAAA-TAGACACAGTGA-GAAATACA-TTTTT---CTGGTCAGTATAATAAAAAT-ACTTTCTTACT---TTTATCAGAAGC------A-TT--TG---T--TA-GA-TAACATTCA-ATGCAT--TCAAT-GACCAC-------GTGGGT-ACTATTTGTAAAT-A-T-TG-AC--AT--T---T-----ATA-CA-G-------GAAGTTAA-----AATACATGTGCGCGATAATCGTATTTTCTCGAAAGTGATCGAATTCA---G---GTTGTGAACGTAA--ATA--GGATAC-G-GCATA--ATAtgaaaaatggatatagtgaaaatacattttttcaggtctctatcctaaaatgactttcttacgtgtatcggaagcattattttttatatttttcatagcattcattgaccaagtggatatgtttgtaaatatcaccaactgtgcacaaagttgaaatacgcgtgcatgatattcgtaattctgggatgtaatcgatttcaggtgatgcttgaaaacaggttgcggcacca
gi|144744 : CCGGAACCACT-ATTATTTCTGACA--TGTG----CAG--TCAG---TC-ATGTT-TATAAC-TGT-T-TT---ACCTTGAAATGT-TATGCATCTG--TTTTCAGC-AGACA-TG-ATTAGAATTGATATT-CGTAAACAAAACCTAGC---TGTTGTCA-AG--GT-TTTATGTCA-AAGTTCTGCAAAA-TGGAAAAAGTGA-GAAATACA-TTTTTA--CAGGTCT----CATCATATG-ACTGT-TTATT---TTCATCA-----------A-TGA-TT---TCATT-TA-TATTTTT
gi|144745 : CCGGAACCTCG-ATAATTTCTGACA--TGCA----CAA--GCGA-AAT--AT-TT-TATAAC-T-T-T-CG---ACCt
gi|144747 : GGAACCTCT-ATAATTTCTTACA--TGCA----CAA--GTGA-AAT--AT-TT-TATAAC-T-T-T-TT---ACCTTGACCTGT-ATTGCATCAC--TTTTCAGC-AAACG-TG-TTTGAAATCAATATC-CGTAAAC-AAACCTAGC---ATTTATCA-AG--GT-TTTATGT-A-AA---CTGAAAAA-TGGACATAGTGA-GAAATACA-TTTGTT--CAGGTTTGTATCATAAAATG-ACTTTCTTACG---TGTATCGGAAGCATTATGA-TTA-TT---T--TT------TTTTTCA-TTGCAT--TCAAT-GATAAC-------GTGGAT-ACTTTTTGTAAAT-A-T-TA-CC--AA--T---T-----GTG-TA-G-------GAAGTTGA-----AATACTTGTGCACGATATACGTA-ATTCTGGGATGTGGTCGATTTCA---G---GTGATGCTCGAAA--ACG--GGTTAC-G-GCACC--ATACgcgatattcgttattatgggaagtgatcgatttcaggtgacgctcgaaaacagcaatcgtaaaacatcgggtattt
gi|144746 : GGAACCTCT-ATAATTTCTTACA--TGCA----CAA--GTGA-AAT--AT-TT-TATAAC-T-T-T-TT---ACCTTGACCTGT-ATTGCATCAC--TTTTCAGC-AAACG-TG-TTTGAAATCAATATC-CGTAAAC-AAACCTAGC---ATTTATCA-AG--GT-TTTATGT-A-AA---CTGAAAAA-TGGACATAGTGA-GAAATACA-TTTGTT--CAGGTTTGTATCATAAAATG-ACTTTCTTACG---TGTATCGGAAGCATTATGA-TTA-TT---T--TT------TTTTTCA-TTGCAT--TCAAT-GATAAC-------GTGGAT-ACTTTTTGTAAAT-A-T-TA-CC--AA--T---T-----GTG-TA-G-------GAAGTTGA-----AATACTTGTGCACGATATACGTA-ATTCTGGGATGTGGTCGATTTCA---G---GTGATGCTCGAAA--ACG--GGTTAC-G-GCACC--ATAC
gi|144748 : GGAACTTTT-ATAAGTTCTGACAATTGCA----CAA--TCAA-G-------TT-TATGAC-T-T-T-TTTTTATCTTCACTTGT---TATGTTAGAGTTTTCAGTTGGAAT-TG--ATGAAA-----ATT-TGTAAAC-AAACCTAGCTTGTTTTAT----G--GT-TTTATGT-A-AA---CTGAAAAA-TGGACATAGTGA-GAAATACA--TTTTT--CAGGT
gi|144749 : -ATAATTTCTGACA--TACG----CAG--TCGTTCGT--AT-GT--ATAACAT-T-T-TG---ACCTTGACTGGT-TATAAATCAA--TTTTCAGC-AGACG-T-------AGTTGATAT
gi|144750 : tTGACA--TGCAATTTCGA--TCA----T--GT-TT-ATTACT-T-T-T-TG---ATCTTGACCTGT-TTTGCATCAG--TTTTCAGC-AT----TG----GAAAT-GAAATT-CATAAAA-AAAC-TAGC---TTTTGTTA-TG--GT-TTTATGT-T-TA---TTGACAAA--AGACATAGTGA-GAAATACT-TTTTCC--CCAGTCTGTATAATAAAATG-ACTGTCTTTCT---TGTATTGGTAGA------A-TTA-TT---T--TT-TA-TATTTTTCA-TTGCAT--TTGAT-GACCAC-------ATGGAT-ACTGTTTG------------------A--G---A-----ATG-CA-G-------GATGTTGC-----AATATA--TGTGCATTATTTGTA-AATCTCTGAAGTAAGTGAAATCA---G---GTTGTGATCGAAA--ACA--TGTTAT-G-ACACC--ATAC
gi|144751 : TCAG--TTTTCAGC-AAACG-CG-TTTGAACTAGATATT-CATAAAC-AAACTTAGG---GTTTGTCG-AG--GT-TTTATGT-A-AT---CTGAAAAA-TGGCCATAATGA-GAAACACA-TTTTTT--CAGGTCTGTATCATAAAAGG-A-------A-T---TGTATCAGAACCTTT---ACTTA-TT---T--TT-G----TTTTTCA-TTGCAT--TTAAT-GACCAC-------GAGGAT-ACTATTTAT
gi|144752 : TCAGC-AGGCGACG-T-TGGAATTAATGTTTCTTAAAC-AAGAATA-----ATTTTTTA-AACTGT-TTTTTGA-C-AA---CCGAAAAA-TGGGAATA-TGC-GAAATACG-TTTTTTTTCATGCTTGTATAATAAAATG-ACGATGTTACC---TGTATGGGAAGC------A-TTG-TT---T--GT-GAGTATTTTT-----------TCAA--GATCATTAACACCGTGGCT-TCTTGTTGTAAAT-ATT-TA-CC--TC--T---------CTG-CA-G-------GAAGTTCA-----AATACGCGTGCGCGATATTAGTA-ATTCTGGAAAATGATCGATTTCA---G---GTGAAGCTC-AAA--ACA--GGTAAC-G-GCACC--ACAtcataattctgggaagtatacacacgt
gi|144754 : AAATTGATATA-CTTAAAC-AAACCTTGC-----TTGAGCCAA--GTATTTATAC-A-AA---CTGAAAAA-TGGACATAGTGA-GAAACACA-TTTCTT--CA---------------ATG-ACTTTCTTGCT---TGTATGAGAAGC------A-TT----------TT-G--CATTT--------CAT--TCAAT-AACCAT-------ATGCAT-ACTAGTTGTAAAT-A-A-TG-CC--TA--C---T-----GTG-CA-A-------GAAGATGAATACTAGTATGCGTGCGCGATATTCATA-ATTCTCTTTAGCGTTCCAATTCA---G---ATCGTGATCGAAA--ACA---TTTAC-G-GCACC--ATA
gi|144753 : --GT-TTT-TTT-ACAA---CCGGAAAC-TGGGAATAATGATAAAATACG-TTTTTT--CATGCTTGTATAACAAAATG-ACAATGTTACC---TGTATGGGAAAC------A-TTG-TT---T--GT-GAGTATTTTT-----ACACGATCAAT-AACACC-------GTGGCT-TGTGGTTGTAAAT-A-T-TT-AC--AT--T---T-----CTG-TA-G-------GAAGTTCA-----AATACGCGTGCGCGATATTCTTA-ATTCTGGGAAGTGATCGATTTCA---G---GTGACGTTCGAAA--AC
gi|144757 : ttggaattaatgtttcttaaagaaaaataagttttaaactT-TTTATGT-A-AA---TCGAAAAAATCAACATAGTGA-GAAACACA-TTTTTT--CAGGTCTGTATCATAAAATG-ACTTTCTTACT---CGTATAGGAAGT------A-CTA-TT---T--TT-GA-TACTTTTCA-TTGCAT--TCAAT-GA-CAC-------GTAAAA-ACTATTTGTAAAT-A-T-TA-CT--AA--T---T-----GTG-CA-G-------AAAGTTGA-----AATACGC-------ATA-TCATA-ATTCTTGGAAGTGATCGAATTCC---G---GTTGTGATTGAAA--ACA--GGTTAC-A-GTACC--ATAC
gi|144740 : TGT-G-AA---CTGAAAAA-TGGATATAGTGA--AAATACA-TTTTTT--CAGGTCTCTATCCTAAAATG-ACTTTCTTACG---TGTATCGGAAGC------A-TTA-TT---T--TT-TA-TATTTTTCA-TAGCAT--TCATT-GACCAA-------GTGGAT-A-TGTTTGTAAAT-A-T-CA-CC--AA--C---T-----GTG-CA-C-------AAAGTTGA-----AATACGCGTGCATGATATTCGTA-ATTCTGGGATGTAATCGATTTCA---G---GTGATGCTTGAAA--ACA--GGTTGC-G-GCACC--
gi|144755 : ctgaaacctctataatttctgacatgcacaaccaaaatattttataacttttgaccttgacctgtattgcattacttttcagcagtcgtgtttgaaatcgatatAAAA-TGGACATAGTGA-GAAATACA-TTTTTT--CAGCTCTGTATCATAAAATG-ACTTTCTTACT---TGTATCAAAAGC------A-TTA-TT---T--TT-GA-TATTTTTCA-TTGCAT--TCAAT-GACCAT-------GTGGAT-ACTTTTTGTAAAT-A-T-TG-CC--AATTT---ATATT-ATG-CA-G-------GAAGTTGA-----AATACGTGTGTGCAATATGCGTA-ATTCTGGGAAGTAAT
gi|144743 : atttctcaatgggtttattcctggatccatAGTAA-GAAAGTCA-TTTGTTA-CAGATCTG----A-AAAATA-TATTTCTCACTATGTCTATTG
gi|144756 : ctggaacatctatactttctgacatgcgcagtcgacatgttaatagcttcatgaccttaactagttatgcatcagttttcagcagaagtcatggaattgatattcgttaacaaaccttgcttttgtcatggttttaggttaaTACA-TTTTTT--TGGGTCTGTATC-TGAA-TA-ACTTTCC-------TGTACCTGAAGC------A-TTA-TT---T--TA-TA-TATTTTTCA-TTGCAT--TCACT-GACCAT-------GTATAT-ACTGTTTGTAAAT-A-T-TGACCTTTG--T---G-----GTG------------GAAGTTG------ATTACGCACGTATGACATTCATA-ATTTTTGGAAGTGATCGATAACA---G---GTTACGCtataccggagacattatattctatattcatcattgcattcaatgcccatatggatactgtttgaaatcattgatattttgtgcaggaagttgatacccttgcgcaatattcataattctcggaagtgatcgaattcaggtctcga
gi|144758 : atttatttttttttaaaaaaatgacataacatcaatttaaaaaaagagttCATGAAATG-ACTTTCTTACT---TGTATCGAAAGC------A-TTA-TT---T---------ATTTTTCA-TTGCAT--TCAAT-GACCAC-------GTAGAT-ACTGTTTGTAAAC-A-
gi|144761 : tATGCACTATCTTCCC---TGTATCGAAAGC------A-TTA-TTGATT--TT-GA-TAATTCTTA-TCGCAT--TCAAC-GAACAA-------GTGGCA-ACTGTTTGTAAAT-A-A-TG-AC---A--T---------GTG-CA-C-------AGGGAAGA-----AA--------------------A-ATTCTTGGAAGTGATCAAATTCACCTG---GTGA---TTGAAAACACA--GACTGCTGTGCACC--ATA
gi|144760 : ATGCACTATCTTCCC---TGTATCGAAAGC------A-TTA-TTGATT--TT-GA-TAATTCTTA-TCGCAT--TCAAC-GAACAA-------GTGGCA-ACTGTTTGTAAAT-A-A-TG-AC---A--T---------GTG-CA-C-------AGGGAAGA-----AA--------------------A-ATTCTTGGAAGTGATCAAATTCACCTG---GTGA---TTGAAA--ACACGGACTGCTGTGCACC--ATA
gi|144759 : ATGCACTATCTTCCC---TGTATCGAAAGC------A-TTA-TTGATT--TT-GA-TAATTCTTA-TCGCAT--TCAAC-GAACAA-------GTGGCA-ACTGTTTGTAAAT-A-A-TG-AC---A--T---------GTG-CA-C-------AGGGAAGA-----AA--------------------A-ATTCTTGGAAGTGATCAAATTCACCTG---GTGA---TTGAAA--ACACGGACTGCTGTGCACC--ATA
gi|144762 : TTACTTGTT---TTCATTCGAAGC------A-TTA-TT---T--TT-TA-CATTTTTAA-TTGCAG--TCAAT-GACCAC-------GTGGAT-ACTGTTTGTATAT-A-T-TG-AC--AT--T---T-----GTA-AA-G-------GAATTTGA-----A
gi|144763 : AAAC------A-TTA-TT---T--TT-TA-TATTCCTCA-TTGCAT--TCAAT-GACCAC-------GC-GATAACTATTTGTAAAT-A-T-TG-CC--AA--T---T-----GTG-CA-G-------GAAGTTGT-----AATGCGCGTGTGCGATATTCATA-ATTTTCGGAAGTGATTGAATTCA---G---GTCGGGATCAAAA--TCA--GGTCAC-G-GCACC--ATA
gi|144764 : TA-TT---T--TT-CA-TAATTTTTTACTGCTT--TAAAT-GACCAC-------ATGGAT-ACTATTTGTAAAT-A-T-TT-CC--AA--T---T-----GTG-CA-G-------GAAGTTGA-----TTTATGCGTGTGCGATATTCATA-ATTCTCTGAAATAATAGAATTCA---G---GTCGTGATCGAAA--ACA--GGTTAC-A-GCACC--
gi|144765 : TTTTTCG-TTACAT--TCAAT-GATCAC-------GTGGAT-AATGTTTGTAAAT-A-T-TG-AC--A
gi|144770 : CAATCAACCAC-------GTGGAT-ACTATTTGTAAAT-A-T-TG-CC--AA--T---T-----GTG-CA-G-------GAAATTG------AATACttt
gi|144768 : CAATCAACCAC-------GTGGAT-ACTTTTTGTAAAT-A-T-TG-CC--AA--T---T-----GTG-CA-G-------GAAAATG------AATAC-CATACCCGATGT
gi|144767 : CAATCAACCAC-------GTGGAT-ACTATTTGTAAAT-A-T-TG-CC--AA--T---T-----GTT-CA-G-------GAAATTG------AATAC
gi|144766 : CAATCAACCAC-------GTGGAT-ACTATTTGTAAAT-A-T-TG-CC--AA--T---T-----GTT-CA-G-------GAAATTG------AATAC
gi|144769 : CAATCAACCAC-------GTGGAT-ACTATTTGTAAAT-A-T-TG-AC--AA--T---T-----ATG-CA-G-------GAAATTG------AATAC
gi|144771 : ACCAC-------GTGGAT-ACTATTTGTAAAT-A-T-TG-CC--AA--T---T-----GTG-CA-G-------GAAATTG------AATACcattcccgatgt
gi|144772 : CAT-------GTGGAT-ACTTTTTTTAAAT-A-T-TG-AT--AT--T---T-----GTG-CA-G-------GAAGATGA-----AATATGCATGCGTGATTCTC----------GGAAGTGATCAAATTCA---G---GTTGTGATTGAAA--ACA--CATTAA-A-GCACC--catacccaatgt
gi|144773 : CAT-------GTGGAT-ACTTTTTGTAAAT-A-T-TG-CC--AA--T---T-----GTG-CA-G-------GAAATTG------AATAC
gi|144775 : GTAAAT-A-TATC-TC--AA--TTTTACCTTTGTG-CAGT-------AAGGTT-A-----AGTACGTGTGCGCAATGTCCGTA-ATTTTCGGAAGTGATTGAATTCA---G---GTTGTAATATATA--ACA--GGTTAT-A-ACGCA--ATAcatacccaatgt
gi|144776 : AT-A-T-TG-CC--AA--T---TTTT--GTG-CA-G-------AAAGCTGA-----AATATGCGTGCGCTATATTTGTA-ATTCTGGGAAGTGATCGATTTCA---G---GTGATGCTCAAAA--ACA--GGTAAC-G-GCACC--ATAC
gi|144774 : --AA--T---A-----GTGATA-TTCATCAGGAAGTTGA-----AATATGCATGCATGA-ACTCG----------GAATTGATCAAATTCA---G---GTTGTAATCAAAA--ACC--GTTTAA-G-TCACC--
gi|144777 : gtaTTGA-----AATAAGCTTGCACAATATTCGTA-ATTCTGGAGAGCGACCGATTTCA---G---GTGGTGGTTGAAA--ACG--GGTTAC-G-GCACC--AT
gi|144745 : CGCGATATTCGTT-ATTATGGGAAGTGATCGATTTCA---G---GTGACGCTCGAAA--ACA--G
gi|144778 : ccggaacctcgataatttctgacatgcacaagcgaaatattttataactttcgacCGCGATATTCGTT-ATTATGGGAAGTGATCGATTTCA---G---GTGACGCTCGAAA--ACA--Gcaatcgtaaaacatcgggtattt
gi|144780 : CGATATTCATA-ATTCTCGGAAGTGATCGAATTCA---G---GTCATGATCGAAA--ATA--CGTTAC-G-GTACC--ATAC
gi|144779 : CGATATTAATA-ATTCTCGGAAGTGATCGAATTCA---G---GTCATGATCGAAA--ATA--AGTTAC-G-GCACC--ATAC
gi|144781 : CGATATTCATA-ATTCTCGGAAGTGATCGAATTCA---G---GTCATGATCGAAA--ATA--CGTTAC-G-GCGTC--ATAC
gi|144782 : CGATATTCATA-ATTCTCGGAAGTGATCGAATTCA---G---GTCATGACCGAAA--ATA--CGTTTA-G-GCACC--ATAC
gi|144783 : GATATTCATA-ATTCTCGGAAGTGATCGAATTCG---G---GTCATGATCGAAA--ATA--CGTTAC-G-GCACC--ATAC
gi|144784 : TA-ATTCTGGGAAGTGATCGATTTCA---T---GTGACGCTCGAAA--ACG--GGTTAC-G-GCACC--ATA
Alignments
lowQualScore : 111111
lowQualScore : 33 2 555 88888 77777 2 2 2 2 2 55555 666 33 2 2 1 1 3 5555 4 2 1 0 66 2 2 333 2 77777777 2 555555 2 22 5 3333 222222 1 1 888 22 6666 1 1 6 1 1 1 1 1 0 7777777 1 66666666 666 888888 3 2 0 1 2 1 1 1 11 33 4 4 11
lowQualScore : .. . ... ..... ..... . . . . . ..... ... .. . . . . . .... . . . . .. . . ... . ........ . ...... . .. . .... ...... . . ... .. .... . . . . . . . . . ....... . ........ ... ...... . . . . . . . . .. .. . . ..
lowQualScore : 77 5 666 99999 00000 7 7 7 7 7 77777 888 77 5 5 2 4 4 0000 7 4 0 2 99 2 2 999 0 22222222 0 888888 0 88 2 5555 000000 6 5 111 11 6666 5 5 5 2 3 1 1 1 2 2222222 1 00000000 000 111111 2 1 1 1 3 7 0 0 77 55 1 1 99
consensus : CCGGAACCTCTATAATTTCTGACA--TGCGCAAN--CG-A-AAT--AT-TT-TATAAC-T-T-T-T-G---ACCTTGACCTGT-ATTGCATCAG--TTTTCAGCAGACG-T-GTTTGAAATCGAT----ATT-CGTAAAC-AAACCTAGCNTTTGTCAAG--GTTTTATGT-A-AA---CTGAAAAA-TGGACATAG--------TGA-GAAA------TACA-TTTTTT--CAGGTCTGTATCATAAAATG-ACTTTCTTACTTGT----ATCGGAAGC------A-TTA-TT---T--TT-GA-TA-TTTTT-CATTGCATTCAAT-GACCACGTGGAT-ACTGTTTGTAAAT-A-T-TGCCA------AT-T--------GTGCA---GGAAGTTGA-----AATACGCGTGCGCGATATTCGTA-ATTCTCGGAAGTGATCGAATTCAGGTCGTGATCGAAA--ACA--GGTTAC-G-GCACC--ATAC
Reference ( family-468 ) : CCGGAACCTCTATAATTTCTGACA--TGCGCAAN--CG-A-AAT--AT-TT-TATAAC-T-T-T-T-G---ACCTTGACCTGT-ATTGCATCAG--TTTTCAGCAGACG-T-GTTTGAAATCGAT----ATT-CGTAAAC-AAACCTAGCNTTTGTCAAG--GTTTTATGT-A-AA---CTGAAAAA-TGGACATAG--------TGA-GAAA------TACA-TTTTTT--CAGGTCTGTATCATAAAATG-ACTTTCTTACTTGT----ATCGGAAGC------A-TTA-TT---T--TT-GA-TA-TTTTT-CATTGCATTCAAT-GACCACGTGGAT-ACTGTTTGTAAAT-A-T-TGCCA------AT-T--------GTGCA---GGAAGTTGA-----AATACGCGTGCGCGATATTCGTA-ATTCTCGGAAGTGATCGAATTCAGGTNATGNTCGAAA--ACA--GGTTAC-G-GCACC--ATAC
gi|144736 : CCGGAACCGCTATAATTTCTGATA--TGCACAAG--CG-A-AAT--AT-TT-TATAAC-T-T-T-T-G---ACCTTGACCTGT-ATTGCATCAG--CTTTCAGCAGACA-T-GTTTGAAATCAAT----ATT-CGTAAAC-AAACCTAGCATTTGTCAAG--GTTTTATGT-A-AA---CTGAAAAA-TGGACATAG--------TGA-AAAA------TACAATTTTTT--CAGGTCTTTACCATAAAATG-ACTTTCTCACTTGT----ATCGGAAGC------A-TTA-CT---T--TT-GA-TA-TTTTT-CATTGCATTCAAT-GATCACGTGGAT-ACTGTTTGTAAAT-A-T-TGCCA------AT-T--------GTGCA---GTAAGTTGA-----AATACGCGTGCACGAAATTCGTA-ATTATGGGAAGTGATCGATTTCAGGTGACACTCAAAA--ACA--GGTTAC-G-GCACC--ATA
gi|144737 : CCGGAACCTCGATAATTTCTGACA--TGCACAAG--CA-A-AAT--AT-TT-TGTAAC-T-T-T-C-G---ACCTTGACCTGT-ATTGCATCAG--TTTTCAGCAGACG-T-GTATGAAATCGAT----ATT-CGTAAAC-AAACCTAGCATTTGTGGAG--GTTTTATGT-A-AA---CTGAAAAA-TGGACCTAG--------TGA-GAAA------TACA-TTTTTT--CAGGTCTGTACCATAAAATG-ACTTTCTCACTTCT----ATCGGAAGC------A-TTA-TT---T--TT-GA-TA-TTTTT-CTTTGCATTCAAT-GACCATGTGGAT-ACTGTTTGTAAAT-A-T-TGCCA------AT-A--------GTGTA---TGAAGTTGA-----AATACGCTTGCGCGATATTCGTA-ATTATGGGAAGTGATCGATTTCAGGTGACGCTCGAAA--ACA--GGTTAC-G-GCACC--ATAC
gi|144738 : CCGGAACCTCTGTAATTTCTGACA--TGCGCAAG--CG-A-AAT--AT-TT-TATAAC-T-T-T-T-G---ACCTTGACCTGT-ATTGCATCAG--TTTTCAGCAGACG-T-GTTTGAAACTGAT----ATT-TTTAAAT-AAACCTAGCATTTGTCGAG--GTTTTATGT-T-AA---CTGAAAAA-T--------------------GAAA------TACA-TTTTTT--CAGGTCTGTACCATAAAAAG-ACTTTCTCACTTGT----ATCGGAAGC------A-TTATTT---T--TT-TA-TA-TTTTT-CTTTGTATTCAAA-GACCCCGTGGAT-ACTGTTTGTGAAT-A-T-TGCCA------AT-T-----------------------------------------GCGATATTCGTA-ATTATGGGAATTGGTCGATTTCAGGTTACGCTCGAAA--ACA--GGTTAC-G-ACACC--ATAC
gi|144739 : CCGGAATTCATATAATTTCTGAAA--TGCGC-----------AT------------AC-T-T-T-T-G---ACCTTGACCTGT-ATTGCATCAG--TTTTCCACAGACG-T-GATTGGAATCGAT----ATC-CGTAAAC-AAACCTAGCGTTTATCACA--GCTTTATGT-A-AA---CTGAAAAT-TGGACATAG--------TGA-GAAA-------AAA-AATGTT--CAGGTCTGTATCATAAAATG-ACTTTCTTACTTAT----ATCGGAAGC------A-TTA-TT---T--TTCTA-TA-TTTAA-CACTCCATTCAAT-GATCACGTGGAT-ACTATTTGT-AAT-A-T-TGCCA------AT-T--------GTGCT---GGAAGTCGA-----AATACGCTTGCGCGATATTCATA-ATTCTCGGAAGTGATCGAATTCTGGTCGTGATCG-AA--ACA--GGTTAC-A-GCACC--ATAC
gi|144740 : CTGAAACCTCTATAATTTCTGACA--TGCACAAC--CA-A-AAT--AT-TT-TATAAC-T-T-T-T-G---ACCTTGACCTGT-ATTGCATTAC--TTTTCAGCAGTCG-T-GTTTGAAATCGAT----ATT--GTGAAC-
gi|144740 : TGT-G-AA---CTGAAAAA-TGGATATAG--------TGA--AAA------TACA-TTTTTT--CAGGTCTCTATCCTAAAATG-ACTTTCTTACGTGT----ATCGGAAGC------A-TTA-TT---T--TT-TA-TA-TTTTT-CATAGCATTCATT-GACCAAGTGGAT-A-TGTTTGTAAAT-A-T-CACCA------AC-T--------GTGCA---CAAAGTTGA-----AATACGCGTGCATGATATTCGTA-ATTCTGGGATGTAATCGATTTCAGGTGATGCTTGAAA--ACA--GGTTGC-G-GCACC--tgaaaaatggatatagtgaaaatacattttttcaggtctctatcctaaaatgactttcttacgtgtatcggaagcattattttttatatttttcatagcattcattgaccaagtggatatgtttgtaaatatcaccaactgtgcacaaagttgaaatacgcgtgcatgatattcgtaattctgggatgtaatcgatttcaggtgatgcttgaaaacaggttgcggcacca
gi|144741 : ctgaaacctctataatttctgacatgcacaaccaaaatattttataacttttgaccttgacctgtattgcattacttttcagcagtcgtgtttgaaatcgatatCCGGAACTTCTATAATTTCTCATA--TGCTCAGT--CG-----TTCAT-GTGTATAAC-T-T-T-T-T---ACATTGACCGAT-TATGAATCAG--TTTTCAGCAGAAG-TGGTTTG-GATTGAC----ACT-TTTAAAC-AAACCTAGCTATTATCAAC--CTTTTAAGT-A-AA---CTGAAAAA-TAGACACAG--------TGA-GAAA------TACA--TTTTT--CTGGTCAGTATAATAAAAAT-ACTTTCTTACTTTT----ATCAGAAGC------A-TT--TG---T--TA-GA-TA-ACATT-CAATGCATTCAAT-GACCACGTGGGT-ACTATTTGTAAAT-A-T-TGACA------TT-T--------ATACA---GGAAGTTAA-----AATACATGTGCGCGATAATCGTATTTTCTCGAAAGTGATCGAATTCAGGTTGTGAACGTAA--ATA--GGATAC-G-GCATA--ATA
gi|144742 : CCGGAACCTCAA-AAGATCTGACA--TGCGCAGT--CG-C-C-T--ATGTT-TATAAC-T-TAT-T-G---ACCTTGACCTATTATGGCATCAG--TTTTCAGCAGACG-T-G---G------------ATC-CGTAAAC-AAACCTAGCTTTTGTCATG--GTTTTATGT-A-AA---CTCAAATA-TGGACATAG--------TGA-GAAA------TACA-ATTTTT--CAG--C---------------ACTTTCTTACTTGG----ACAGGAAAC------A-TTA-TT---T--TT-GA-TA-GTTTT-TACTGCTTTCAAT-GACCACGTGGAT-AACATTTGT---T-A-T-AACC-------TT-T--------GTGCA---TGAAGCTGA-----AATACGTTTGTGCGATATTCGTA-GTTCTCCGAAGAGATCGAATTCAGACTGTGAACGAAA--ACA--GGTTAG-G-GCACCCTATAC
gi|144743 : CTGGAACATCTATACTTTCTGACA--TGCGCAGT--CG-A-CAT--GT-TA--ATAGC-T-T-CAT-G---ACCTTAACTAGT-TATGCATCAG--TTTTCAGCAGAAG-T--CATGGAATTGAT----ATT-CGTTAAC-AAACCTTGCTTTTGTCATG--GTTTTAGGT-T-AA---C-----AA-TAGACATAG--------TGA-GAAA------TATA-TTTTT---CAGATCTGTAACA---AATG-ACTTTCTTACTTAT----ACCGGAGAC------A-TTA-TA---T--TC-TA-TA-TTCAT-CATTGCATTCAAT-GCCCATATGGAT-ACTGTTTG-AAATCA-T-TGATAT-----TT-T--------GTGCA---GGAAGTTG-------ATACCCTTGCGCAATATTCATA-ATTCTCGGAAGTGATCGAATTCAGGT
gi|144744 : CCGGAACCACTATTATTTCTGACA--TGTGCAGT--C----AGTC-ATGTT-TATAAC-TGT-T-T-T---ACCTTGAAATGT-TATGCATCTG--TTTTCAGCAGACA-T-GATTAGAATTGAT----ATT-CGTAAACAAAACCTAGCTGTTGTCAAG--GTTTTATGTCA-AAGTTCTGCAAAA-TGGAAAAAG--------TGA-GAAA------TACA-TTTTTA--CAGGTCT-CATCAT---ATG-ACTGT-TTATTTTC----ATCA-----------A-TGA-TT---TCATT-TA-TA-TTTTT-ctcga
gi|144745 : CCGGAACCTCGATAATTTCTGACA--TGCACAAG--CG-A-AAT--AT-TT-TATAAC-T-T-T-C-G---ACCt
gi|144745 : CGCGATATTCGTT-ATTATGGGAAGTGATCGATTTCAGGTGACGCTCGAAA--ACA--Ggcgatattcgttattatgggaagtgatcgatttcaggtgacgctcgaaaacagcaatcgtaaaacatcgggtattt
gi|144746 : ccggaacctcgataatttctgacatgcacaagcgaaatattttataactttcgacGGAACCTCTATAATTTCTTACA--TGCACAAG--TG-A-AAT--AT-TT-TATAAC-T-T-T-T-T---ACCTTGACCTGT-ATTGCATCAC--TTTTCAGCAAACG-T-GTTTGAAATCAAT----ATC-CGTAAAC-AAACCTAGCATTTATCAAG--GTTTTATGT-A-AA---CTGAAAAA-TGGACATAG--------TGA-GAAA------TACA-TTTGTT--CAGGTTTGTATCATAAAATG-ACTTTCTTACGTGT----ATCGGAAGCATTATGA-TTA-TT---T--TT-------TTTTT-CATTGCATTCAAT-GATAACGTGGAT-ACTTTTTGTAAAT-A-T-TACCA------AT-T--------GTGTA---GGAAGTTGA-----AATACTTGTGCACGATATACGTA-ATTCTGGGATGTGGTCGATTTCAGGTGATGCTCGAAA--ACG--GGTTAC-G-GCACC--ATACcaatcgtaaaacatcgggtattt
gi|144747 : GGAACCTCTATAATTTCTTACA--TGCACAAG--TG-A-AAT--AT-TT-TATAAC-T-T-T-T-T---ACCTTGACCTGT-ATTGCATCAC--TTTTCAGCAAACG-T-GTTTGAAATCAAT----ATC-CGTAAAC-AAACCTAGCATTTATCAAG--GTTTTATGT-A-AA---CTGAAAAA-TGGACATAG--------TGA-GAAA------TACA-TTTGTT--CAGGTTTGTATCATAAAATG-ACTTTCTTACGTGT----ATCGGAAGCATTATGA-TTA-TT---T--TT-------TTTTT-CATTGCATTCAAT-GATAACGTGGAT-ACTTTTTGTAAAT-A-T-TACCA------AT-T--------GTGTA---GGAAGTTGA-----AATACTTGTGCACGATATACGTA-ATTCTGGGATGTGGTCGATTTCAGGTGATGCTCGAAA--ACG--GGTTAC-G-GCACC--ATAC
gi|144748 : GGAACTTTTATAAGTTCTGACAATTGCACAAT--CA-A-G-------TT-TATGAC-T-T-T-T-TTTTATCTTCACTTGT---TATGTTAGAGTTTTCAG-----------TTGGAATTGATGAAAATT-TGTAAAC-AAACCTAGCTTGTTTTATG--GTTTTATGT-A-AA---CTGAAAAA-TGGACATAG--------TGA-GAAA------TACA--TTTTT--CAGGT
gi|144749 : TATAATTTCTGACA--TACGCAGT--CGTT-CGT--A--TG-TATAACAT-T-T-T-G---ACCTTGACTGGT-TATAAATCAA--TTTTCAGCAGACG-T-AGTTGATAT
gi|144750 : TGACA--TGC--AATTTCG-ATCAT--GT-TT--ATTAC-T-T-T-TTG---ATCTTGACCTGT-TTTGCATCAG--TTTTCAGCA--------TTGGAAAT-GAA----ATT-CATAAAA-AAAC-TAGCTTTTGTTATG--GTTTTATGT-T-TA---TTGACAAA--AGACATAG--------TGA-GAAA------TACT-TTTTCC--CCAGTCTGTATAATAAAATG-ACTGTCTTTCTTGT----ATTGGTAGA------A-TTA-TT---T--TT-TA-TA-TTTTT-CATTGCATTTGAT-GACCACATGGAT-ACTGTTTGAGAA------------------------------TGCA---GGATGTTGC-----AATATATGTGCAT--TATTTGTA-AATCTCTGAAGTAAGTGAAATCAGGTTGTGATCGAAA--ACA--TGTTAT-G-ACACC--ATAC
gi|144751 : TCAG--TTTTCAGCAAACG-C-GTTTGAACTAGAT----ATT-CATAAAC-AAACTTAGGGTTTGTCGAG--GTTTTATGT-A-AT---CTGAAAAA-TGGCCATAA--------TGA-GAAA------CACA-TTTTTT--CAGGTCTGTATCATAAAAGG-A-------A-TTGT----ATCAGAACCTTT---ACTTA-TT---T--TT-G-----TTTTT-CATTGCATTTAAT-GACCACGAGGAT-ACTATT------T-A-T-TCATA------AT-T--------CTG-----GGAAGT--A-----TACACACGT
gi|144752 : TCAGCAGGCGAC-GTT-GGAATTAAT----GTTTCTTAAAC-AAGAATA--ATTTTTTAAACTGTTTTTTGA-C-AA---CCGAAAAA-TGGGAATA---------TGC-GAAA------TACG-TTTTTTTTCATGCTTGTATAATAAAATG-ACGATGTTACCTGT----ATGGGAAGC------A-TTG-TT---T--GT-GAGTA-TTTTT---TCAAGATCATT-AACACCGTGGCT-TCTTGTTGTAAAT-ATT-TACC--------TCT--------CTGCA---GGAAGTTCA-----AATACGCGTGCGCGATATTAGTA-ATTCTGGAAAATGATCGATTTCAGGTGAAGCTC-AAA--ACA--GGTAAC-G-GCACC--ACA
gi|144753 : TTGGAATTAAT----GTTTCTTAAAG-AAAAATAAGTTTT---AAACTGTTTT-TTT-ACAA---CCGGAAAC-TGGGAATAA--------TGATAAAA------TACG-TTTTTT--CATGCTTGTATAACAAAATG-ACAATGTTACCTGT----ATGGGAAAC------A-TTG-TT---T--GT-GAGTA-TTTTTACA---CGATCAAT-AACACCGTGGCT-TGTGGTTGTAAAT-A-T-TTACA------TT-T--------CTGTA---GGAAGTTCA-----AATACGCGTGCGCGATATTCTTA-ATTCTGGGAAGTGATCGATTTCAGGTGACGTTCGAAA--AC
gi|144754 : AAATTGAT----ATA-CTTAAAC-AAACCTTGCTTGAGCCAAG--TATTTATAC-A-AA---CTGAAAAA-TGGACATAG--------TGA-GAAA------CACA-TTTCTT--CA---------------ATG-ACTTTCTTGCTTGT----ATGAGAAGC------A------T---T--TT-G-----------CATTTCATTCAAT-AACCATATGCAT-ACTAGTTGTAAAT-A-A-TGCCT------AC-T--------GTGCA---AGAAGATGAATACTAGTATGCGTGCGCGATATTCATA-ATTCTCTTTAGCGTTCCAATTCAGATCGTGATCGAAA--ACA---TTTAC-G-GCACC--ATA
gi|144755 : AAAA-TGGACATAG--------TGA-GAAA------TACA-TTTTTT--CAGCTCTGTATCATAAAATG-ACTTTCTTACTTGT----ATCAAAAGC------A-TTA-TT---T--TT-GA-TA-TTTTT-CATTGCATTCAAT-GACCATGTGGAT-ACTTTTTGTAAAT-A-T-TGCCAATTTATAT-T--------ATGCA---GGAAGTTGA-----AATACGTGTGTGCAATATGCGTA-ATTCTGGGAAGTAAT
gi|144756 : atttctcaatgggtttattcctggatccatAAAAA-TG-ACATAACATCAATTTAA-AAAAAGAGTTTACA-TTTTTT--TGGGTCTGTATC-TGAA-TA-ACTTTCCT----GT----ACCTGAAGC------A-TTA-TT---T--TA-TA-TA-TTTTT-CATTGCATTCACT-GACCATGTATAT-ACTGTTTGTAAAT-A-T-TGACC------TT-T--------GTGGT---GGAAGTTG------ATTACGCACGTATGACATTCATA-ATTTTTGGAAGTGATCGATAACAGGTTACG
gi|144757 : atttatttttttttaaTTTTATGT-A-AA---TCGAAAAAATCAACATAG--------TGA-GAAA------CACA-TTTTTT--CAGGTCTGTATCATAAAATG-ACTTTCTTACTCGT----ATAGGAAGT------A-CTA-TT---T--TT-GA-TA-CTTTT-CATTGCATTCAAT-GA-CACGTAAAA-ACTATTTGTAAAT-A-T-TACTA------AT-T--------GTGCA---GAAAGTTGA-----AATACGC-------ATA-TCATA-ATTCTTGGAAGTGATCGAATTCCGGTTGTGATTGAAA--ACA--GGTTAC-A-GTACC--ATACc
gi|144758 : TCATGAAATG-ACTTTCTTACTTGT----ATCGAAAGC------A-TTA-TT---T---------A-TTTTT-CATTGCATTCAAT-GACCACGTAGAT-ACTGTTTGTAAAC-A-
gi|144759 : ATGCACTATCTTCCCTGT----ATCGAAAGC------A-TTA-TTGATT--TT-GA-TA-ATTCT-TATCGCATTCAAC-GAACAAGTGGCA-ACTGTTTGTAAAT-A-A-TGACA---------T--------GTGCACAGGGAA---GA-----AA--------------------A-ATTCTTGGAAGTGATCAAATTCACCTGGTGATTGAAA--ACACGGACTGCTGTGCACC--ATA
gi|144760 : ATGCACTATCTTCCCTGT----ATCGAAAGC------A-TTA-TTGATT--TT-GA-TA-ATTCT-TATCGCATTCAAC-GAACAAGTGGCA-ACTGTTTGTAAAT-A-A-TGACA---------T--------GTGCACAGGGAA---GA-----AA--------------------A-ATTCTTGGAAGTGATCAAATTCACCTGGTGATTGAAA--ACACGGACTGCTGTGCACC--ATA
gi|144761 : ATGCACTATCTTCCCTGT----ATCGAAAGC------A-TTA-TTGATT--TT-GA-TA-ATTCT-TATCGCATTCAAC-GAACAAGTGGCA-ACTGTTTGTAAAT-A-A-TGACA---------T--------GTGCACAGGGAA---GA-----AA--------------------A-ATTCTTGGAAGTGATCAAATTCACCTGGTGATTGAAAACACA--GACTGCTGTGCACC--ATA
gi|144762 : TTACTTGTTTTCATTCGAAGC------A-TTA-TT---T--TT-TA-CA-TTTTT-AATTGCAGTCAAT-GACCACGTGGAT-ACTGTTTGTATAT-A-T-TGACA------TT-T--------GTAAA---GGAATTTGA-----A
gi|144763 : AAAC------A-TTA-TT---T--TT-TA-TA-TTCCT-CATTGCATTCAAT-GACCACGC-GATAACTATTTGTAAAT-A-T-TGCCA------AT-T--------GTGCA---GGAAGTTGT-----AATGCGCGTGTGCGATATTCATA-ATTTTCGGAAGTGATTGAATTCAGGTCGGGATCAAAA--TCA--GGTCAC-G-GCACC--ATA
gi|144764 : TA-TT---T--TT-CA-TAATTTTT-TACTGCTTTAAAT-GACCACATGGAT-ACTATTTGTAAAT-A-T-TTCCA------AT-T--------GTGCA---GGAAGTTGA-----TTTATGCGTGTGCGATATTCATA-ATTCTCTGAAATAATAGAATTCAGGTCGTGATCGAAA--ACA--GGTTAC-A-GCACC--
gi|144765 : -TTTTT-CGTTACATTCAAT-GATCACGTGGAT-AATGTTTGTAAAT-A-T-TGACA------TT-T--------
gi|144766 : CAATCAACCACGTGGAT-ACTATTTGTAAAT-A-T-TGCCA------AT-T--------GTTCA---GGAAATTG------AATAC
gi|144767 : CAATCAACCACGTGGAT-ACTATTTGTAAAT-A-T-TGCCA------AT-T--------GTTCA---GGAAATTG------AATAC
gi|144768 : CAATCAACCACGTGGAT-ACTTTTTGTAAAT-A-T-TGCCA------AT-T--------GTGCA---GGAAAATG------AATAC-CATACCCGATGT
gi|144769 : CAATCAACCACGTGGAT-ACTATTTGTAAAT-A-T-TGACA------AT-T--------ATGCA---GGAAATTG------AATAC-CATTCCCGATGT
gi|144770 : CAATCAACCACGTGGAT-ACTATTTGTAAAT-A-T-TGCCA------AT-T--------GTGCA---GGAAATTG------AATAC
gi|144771 : ACCACGTGGAT-ACTATTTGTAAAT-A-T-TGCCA------AT-T--------GTGCA---GGAAATTG------AATAC-CATACCCAATGT
gi|144772 : CATGTGGAT-ACTTTTTTTAAAT-A-T-TGATA------TT-T--------GTGCA---GGAAGATGA-----AATATGCATGCGTG----------ATTCTCGGAAGTGATCAAATTCAGGTTGTGATTGAAA--ACA--CATTAA-A-GCACC--
gi|144773 : CATGTGGAT-ACTTTTTGTAAAT-A-T-TGCCA------AT-T--------GTGCA---GGAAATTG------AATAC-CATACCCAATGT
gi|144774 : GTAAAT-A-G-TGATA------TT-C--------AT-CA---GGAAGTTGA-----AATATGCATGCATGA---------A--CTCGGAATTGATCAAATTCAGGTTGTAATCAAAA--ACC--GTTTAA-G-TCACC--
gi|144775 : GTAAAT-A-TATCTCA------AT-TTTACCTTTGTGCA---GTAAGGTTA-----AGTACGTGTGCGCAATGTCCGTA-ATTTTCGGAAGTGATTGAATTCAGGTTGTAATATATA--ACA--GGTTAT-A-ACGCA--ATA
gi|144776 : AT-A-T-TGCCA------AT-TTTT-----GTGCA---GAAAGCTGA-----AATATGCGTGCGCTATATTTGTA-ATTCTGGGAAGTGATCGATTTCAGGTGATGCTCAAAA--ACA--GGTAAC-G-GCACC--ATAC
gi|144777 : TTGA-----AATAAGCTTGCACAATATTCGTA-ATTCTGGAGAGCGACCGATTTCAGGTGGTGGTTGAAA--ACG--GGTTAC-G-GCACC--AT
gi|144778 : CGCGATATTCGTT-ATTATGGGAAGTGATCGATTTCAGGTGACGCTCGAAA--ACA--G
gi|144779 : CGATATTAATA-ATTCTCGGAAGTGATCGAATTCAGGTCATGATCGAAA--ATA--AGTTAC-G-GCACC--ATAC
gi|144780 : CGATATTCATA-ATTCTCGGAAGTGATCGAATTCAGGTCATGATCGAAA--ATA--CGTTAC-G-GTACC--ATAC
gi|144781 : CGATATTCATA-ATTCTCGGAAGTGATCGAATTCAGGTCATGATCGAAA--ATA--CGTTAC-G-GCGTC--ATAC
gi|144782 : CGATATTCATA-ATTCTCGGAAGTGATCGAATTCAGGTCATGACCGAAA--ATA--CGTTTA-G-GCACC--ATAC
gi|144783 : GATATTCATA-ATTCTCGGAAGTGATCGAATTCGGGTCATGATCGAAA--ATA--CGTTAC-G-GCACC--ATAC
gi|144784 : TA-ATTCTGGGAAGTGATCGATTTCATGTGACGCTCGAAA--ACG--GGTTAC-G-GCACC--ATA
Alignments
lowQualScore : 111111
lowQualScore : 33 2 555 88888 77777 2 2 2 2 2 55555 666 33 2 2 1 0 3 5555 4 2 1 0 66 2 2 333 2 77777777 2 555555 2 22 5 3333 222222 1 1 888 22 6666 1 1 6 1 1 1 1 1 0 7777777 1 66666666 666 888888 3 2 0 1 2 1 666 0 11 33 4 4 11
lowQualScore : .. . ... ..... ..... . . . . . ..... ... .. . . . . . .... . . . . .. . . ... . ........ . ...... . .. . .... ...... . . ... .. .... . . . . . . . . . ....... . ........ ... ...... . . . . . . ... . .. .. . . ..
lowQualScore : 77 5 666 99999 00000 7 7 7 7 7 77777 888 77 5 5 2 1 4 0000 7 4 0 2 99 2 2 999 0 22222222 0 888888 0 88 2 5555 000000 6 5 111 11 6666 5 5 5 2 3 1 1 1 2 9999999 1 00000000 000 111111 2 1 1 1 3 2 222 5 77 55 1 1 99
consensus : CCGGAACCTCTATAATTTCTGACA--TGCGCAAN--CG-A-AAT--AT-TT-TATAAC-T-T-T-T-G---ACCTTGACCTGT-ATTGCATCAG--TTTTCAGCAGACG-T-GTTTGAAATCGAT----ATT-CGTAAAC-AAACCTAGCNTTTGTCAAG--GTTTTATGT-A-AA---CTGAAAAA-TGGACATAG--------TGA-GAAA------TACA-TTTTTT--CAGGTCTGTATCATAAAATG-ACTTTCTTACTTGT----ATCGGAAGC------A-TTA-TT---T--TT-GA-TA-TTTTT-CATTGCATTCAAT-GACCACGTGGAT-ACTGTTTGTAAAT-A-T-TGCCA------AT-T--------GTGCA---GGAAGTTGA-----AATACGCGTGCGCGATATTCGTA-ATTCTCGGAAGTGATCGAATTCAGGT--CGTGATCGAAA--ACA--GGTTAC-G-GCACC--ATAC
Reference ( family-468 ) : CCGGAACCTCTATAATTTCTGACA--TGCGCAAN--CG-A-AAT--AT-TT-TATAAC-T-T-T-T-G---ACCTTGACCTGT-ATTGCATCAG--TTTTCAGCAGACG-T-GTTTGAAATCGAT----ATT-CGTAAAC-AAACCTAGCNTTTGTCAAG--GTTTTATGT-A-AA---CTGAAAAA-TGGACATAG--------TGA-GAAA------TACA-TTTTTT--CAGGTCTGTATCATAAAATG-ACTTTCTTACTTGT----ATCGGAAGC------A-TTA-TT---T--TT-GA-TA-TTTTT-CATTGCATTCAAT-GACCACGTGGAT-ACTGTTTGTAAAT-A-T-TGCCA------AT-T--------GTGCA---GGAAGTTGA-----AATACGCGTGCGCGATATTCGTA-ATTCTCGGAAGTGATCGAATTCAGGT--CGTGATCGAAA--ACA--GGTTAC-G-GCACC--ATAC
gi|144736 : CCGGAACCGCTATAATTTCTGATA--TGCACAAG--CG-A-AAT--AT-TT-TATAAC-T-T-T-T-G---ACCTTGACCTGT-ATTGCATCAG--CTTTCAGCAGACA-T-GTTTGAAATCAAT----ATT-CGTAAAC-AAACCTAGCATTTGTCAAG--GTTTTATGT-A-AA---CTGAAAAA-TGGACATAG--------TGA-AAAA------TACAATTTTTT--CAGGTCTTTACCATAAAATG-ACTTTCTCACTTGT----ATCGGAAGC------A-TTA-CT---T--TT-GA-TA-TTTTT-CATTGCATTCAAT-GATCACGTGGAT-ACTGTTTGTAAAT-A-T-TGCCA------AT-T--------GTGCA---GTAAGTTGA-----AATACGCGTGCACGAAATTCGTA-ATTATGGGAAGTGATCGATTTCAGGT--GACACTCAAAA--ACA--GGTTAC-G-GCACC--ATA
gi|144737 : CCGGAACCTCGATAATTTCTGACA--TGCACAAG--CA-A-AAT--AT-TT-TGTAAC-T-T-T-C-G---ACCTTGACCTGT-ATTGCATCAG--TTTTCAGCAGACG-T-GTATGAAATCGAT----ATT-CGTAAAC-AAACCTAGCATTTGTGGAG--GTTTTATGT-A-AA---CTGAAAAA-TGGACCTAG--------TGA-GAAA------TACA-TTTTTT--CAGGTCTGTACCATAAAATG-ACTTTCTCACTTCT----ATCGGAAGC------A-TTA-TT---T--TT-GA-TA-TTTTT-CTTTGCATTCAAT-GACCATGTGGAT-ACTGTTTGTAAAT-A-T-TGCCA------AT-A--------GTGTA---TGAAGTTGA-----AATACGCTTGCGCGATATTCGTA-ATTATGGGAAGTGATCGATTTCAGGT--GACGCTCGAAA--ACA--GGTTAC-G-GCACC--ATAC
gi|144738 : CCGGAACCTCTGTAATTTCTGACA--TGCGCAAG--CG-A-AAT--AT-TT-TATAAC-T-T-T-T-G---ACCTTGACCTGT-ATTGCATCAG--TTTTCAGCAGACG-T-GTTTGAAACTGAT----ATT-TTTAAAT-AAACCTAGCATTTGTCGAG--GTTTTATGT-T-AA---CTGAAAAA-T--------------------GAAA------TACA-TTTTTT--CAGGTCTGTACCATAAAAAG-ACTTTCTCACTTGT----ATCGGAAGC------A-TTATTT---T--TT-TA-TA-TTTTT-CTTTGTATTCAAA-GACCCCGTGGAT-ACTGTTTGTGAAT-A-T-TGCCA------AT-T-----------------------------------------GCGATATTCGTA-ATTATGGGAATTGGTCGATTTCAGGT--TACGCTCGAAA--ACA--GGTTAC-G-ACACC--ATAC
gi|144739 : CCGGAATTCATATAATTTCTGAAA--TGCGC-----------AT------------AC-T-T-T-T-G---ACCTTGACCTGT-ATTGCATCAG--TTTTCCACAGACG-T-GATTGGAATCGAT----ATC-CGTAAAC-AAACCTAGCGTTTATCACA--GCTTTATGT-A-AA---CTGAAAAT-TGGACATAG--------TGA-GAAA-------AAA-AATGTT--CAGGTCTGTATCATAAAATG-ACTTTCTTACTTAT----ATCGGAAGC------A-TTA-TT---T--TTCTA-TA-TTTAA-CACTCCATTCAAT-GATCACGTGGAT-ACTATTTGT-AAT-A-T-TGCCA------AT-T--------GTGCT---GGAAGTCGA-----AATACGCTTGCGCGATATTCATA-ATTCTCGGAAGTGATCGAATTCTGGT--CGTGATCG-AA--ACA--GGTTAC-A-GCACC--ATAC
gi|144740 : CTGAAACCTCTATAATTTCTGACA--TGCACAAC--CA-A-AAT--AT-TT-TATAAC-T-T-T-T-G---ACCTTGACCTGT-ATTGCATTAC--TTTTCAGCAGTCG-T-GTTTGAAATCGAT----ATT--GTGAAC-
gi|144740 : TGT-G-AA---CTGAAAAA-TGGATATAG--------TGA--AAA------TACA-TTTTTT--CAGGTCTCTATCCTAAAATG-ACTTTCTTACGTGT----ATCGGAAGC------A-TTA-TT---T--TT-TA-TA-TTTTT-CATAGCATTCATT-GACCAAGTGGAT-A-TGTTTGTAAAT-A-T-CACCA------AC-T--------GTGCA---CAAAGTTGA-----AATACGCGTGCATGATATTCGTA-ATTCTGGGATGTAATCGATTTCAGGT--GATGCTTGAAA--ACA--GGTTGC-G-GCACC--tgaaaaatggatatagtgaaaatacattttttcaggtctctatcctaaaatgactttcttacgtgtatcggaagcattattttttatatttttcatagcattcattgaccaagtggatatgtttgtaaatatcaccaactgtgcacaaagttgaaatacgcgtgcatgatattcgtaattctgggatgtaatcgatttcaggtgatgcttgaaaacaggttgcggcacca
gi|144741 : ctgaaacctctataatttctgacatgcacaaccaaaatattttataacttttgaccttgacctgtattgcattacttttcagcagtcgtgtttgaaatcgatatCCGGAACTTCTATAATTTCTCATA--TGCTCAGT--CG-----TTCAT-GTGTATAAC-T-T-T-T-T---ACATTGACCGAT-TATGAATCAG--TTTTCAGCAGAAG-TGGTTTG-GATTGAC----ACT-TTTAAAC-AAACCTAGCTATTATCAAC--CTTTTAAGT-A-AA---CTGAAAAA-TAGACACAG--------TGA-GAAA------TACA--TTTTT--CTGGTCAGTATAATAAAAAT-ACTTTCTTACTTTT----ATCAGAAGC------A-TT--TG---T--TA-GA-TA-ACATT-CAATGCATTCAAT-GACCACGTGGGT-ACTATTTGTAAAT-A-T-TGACA------TT-T--------ATACA---GGAAGTTAA-----AATACATGTGCGCGATAATCGTATTTTCTCGAAAGTGATCGAATTCAGGT--TGTGAACGTAA--ATA--GGATAC-G-GCATA--ATA
gi|144742 : CCGGAACCTCAA-AAGATCTGACA--TGCGCAGT--CG-C-C-T--ATGTT-TATAAC-T-TAT-T-G---ACCTTGACCTATTATGGCATCAG--TTTTCAGCAGACG-T-G---------GAT------C-CGTAAAC-AAACCTAGCTTTTGTCATG--GTTTTATGT-A-AA---CTCAAATA-TGGACATAG--------TGA-GAAA------TACA-ATTTTT--CAG--------CA---------CTTTCTTACTTGG----ACAGGAAAC------A-TTA-TT---T--TT-GA-TA-GTTTT-TACTGCTTTCAAT-GACCACGTGGAT-AACATTTGT---T-A-T-AACCT-------T-T--------GTGCA---TGAAGCTGA-----AATACGTTTGTGCGATATTCGTA-GTTCTCCGAAGAGATCGAATTCAGAC--TGTGAACGAAA--ACA--GGTTAG-G-GCACCCTATAC
gi|144743 : CTGGAACATCTATACTTTCTGACA--TGCGCAGT--CG-A-CAT--GT-TA--ATAGC-T-T-CAT-G---ACCTTAACTAGT-TATGCATCAG--TTTTCAGCAGAAG-T--CATGGAATTGAT----ATT-CGTTAAC-AAACCTTGCTTTTGTCATG--GTTTTAGGT-T-AA---C-----AA-TAGACATAG--------TGA-GAAA------TATA-TTTTT---CAGATCTGTAACA---AATG-ACTTTCTTACTTAT----ACCGGAGAC------A-TTA-TA---T--TC-TA-TA-TTCAT-CATTGCATTCAAT-GCCCATATGGAT-ACTGTTTG-AAATCA-T-TGATAT-----TT-T--------GTGCA---GGAAGTTG-------ATACCCTTGCGCAATATTCATA-ATTCTCGGAAGTGATCGAATTCAGGT--C
gi|144744 : CCGGAACCACTATTATTTCTGACA--TGTGCAGT--C----AGTC-ATGTT-TATAAC-TGT-T-T-T---ACCTTGAAATGT-TATGCATCTG--TTTTCAGCAGACA-T-GATTAGAATTGAT----ATT-CGTAAACAAAACCTAGCTGTTGTCAAG--GTTTTATGTCA-AAGTTCTGCAAAA-TGGAAAAAG--------TGA-GAAA------TACA-TTTTTA--CAGGTCT-CATCAT---ATG-ACTGT-TTATTTTC----ATCA-----------A-TGA-TT---TCATT-TA-TA-TTTTT-tcga
gi|144745 : CCGGAACCTCGATAATTTCTGACA--TGCACAAG--CG-A-AAT--AT-TT-TATAAC-T-T-T-C-G---ACCt
gi|144745 : CGCGATATTCGTT-ATTATGGGAAGTGATCGATTTCAGGT--GACGCTCGAAA--ACA--Ggcgatattcgttattatgggaagtgatcgatttcaggtgacgctcgaaaacagcaatcgtaaaacatcgggtattt
gi|144746 : ccggaacctcgataatttctgacatgcacaagcgaaatattttataactttcgacGGAACCTCTATAATTTCTTACA--TGCACAAG--TG-A-AAT--AT-TT-TATAAC-T-T-T-T-T---ACCTTGACCTGT-ATTGCATCAC--TTTTCAGCAAACG-T-GTTTGAAATCAAT----ATC-CGTAAAC-AAACCTAGCATTTATCAAG--GTTTTATGT-A-AA---CTGAAAAA-TGGACATAG--------TGA-GAAA------TACA-TTTGTT--CAGGTTTGTATCATAAAATG-ACTTTCTTACGTGT----ATCGGAAGCATTATGA-TTA-TT---T--TT-------TTTTT-CATTGCATTCAAT-GATAACGTGGAT-ACTTTTTGTAAAT-A-T-TACCA------AT-T--------GTGTA---GGAAGTTGA-----AATACTTGTGCACGATATACGTA-ATTCTGGGATGTGGTCGATTTCAGGT--GATGCTCGAAA--ACG--GGTTAC-G-GCACC--ATACcaatcgtaaaacatcgggtattt
gi|144747 : GGAACCTCTATAATTTCTTACA--TGCACAAG--TG-A-AAT--AT-TT-TATAAC-T-T-T-T-T---ACCTTGACCTGT-ATTGCATCAC--TTTTCAGCAAACG-T-GTTTGAAATCAAT----ATC-CGTAAAC-AAACCTAGCATTTATCAAG--GTTTTATGT-A-AA---CTGAAAAA-TGGACATAG--------TGA-GAAA------TACA-TTTGTT--CAGGTTTGTATCATAAAATG-ACTTTCTTACGTGT----ATCGGAAGCATTATGA-TTA-TT---T--TT-------TTTTT-CATTGCATTCAAT-GATAACGTGGAT-ACTTTTTGTAAAT-A-T-TACCA------AT-T--------GTGTA---GGAAGTTGA-----AATACTTGTGCACGATATACGTA-ATTCTGGGATGTGGTCGATTTCAGGT--GATGCTCGAAA--ACG--GGTTAC-G-GCACC--ATAC
gi|144748 : GGAACTTTTATAAGTTCTGACAATTGCACAAT--CA-A-G-------TT-TATGAC-T-T-T-T-TTTTATCTTCACTTGT---TATGTTAGAGTTTTCAG-----------TTGGAATTGATGAAAATT-TGTAAAC-AAACCTAGCTTGTTTTATG--GTTTTATGT-A-AA---CTGAAAAA-TGGACATAG--------TGA-GAAA------TACA--TTTTT--CAGGT
gi|144749 : TATAATTTCTGACA--TACGCAGT--CGTT-CGT--A--TG-TATAACAT-T-T-T-G---ACCTTGACTGGT-TATAAATCAA--TTTTCAGCAGACG-T-AGTTGATAT
gi|144750 : TGACA--TGC--AATTTCG-ATCAT--GT-TT--ATTAC-T-T-T-TTG---ATCTTGACCTGT-TTTGCATCAG--TTTTCAGCA--------TTGGAAAT-GAA----ATT-CATAAAA-AAAC-TAGCTTTTGTTATG--GTTTTATGT-T-TA---TTGACAAA--AGACATAG--------TGA-GAAA------TACT-TTTTCC--CCAGTCTGTATAATAAAATG-ACTGTCTTTCTTGT----ATTGGTAGA------A-TTA-TT---T--TT-TA-TA-TTTTT-CATTGCATTTGAT-GACCACATGGAT-ACTGTTTGAGAA------------------------------TGCA---GGATGTTGC-----AATATATGTGCAT--TATTTGTA-AATCTCTGAAGTAAGTGAAATCAGGT--TGTGATCGAAA--ACA--TGTTAT-G-ACACC--ATAC
gi|144751 : TCAG--TTTTCAGCAAACG-C-GTTTGAACTAGAT----ATT-CATAAAC-AAACTTAGGGTTTGTCGAG--GTTTTATGT-A-AT---CTGAAAAA-TGGCCATAA--------TGA-GAAA------CACA-TTTTTT--CAGGTCTGTATCATAAAAGG-A-------A-TTGT----ATCAGAACCTTT---ACTTA-TT---T--TT-G-----TTTTT-CATTGCATTTAAT-GACCACGAGGAT-ACTATT------T-A-T-TCATA------AT-T--------CTG-----GGAAGT--A-----TACACACGT
gi|144752 : TCAGCAGGCGAC-GTT-GGAATTAAT----GTTTCTTAAAC-AAGAATA--ATTTTTTAAACTGTTTTTTGA-C-AA---CCGAAAAA-TGGGAATA---------TGC-GAAA------TACG-TTTTTTTTCATGCTTGTATAATAAAATG-ACGATGTTACCTGT----ATGGGAAGC------A-TTG-TT---T--GT-GAGTA-TTTTT---TCAAGATCATT-AACACCGTGGCT-TCTTGTTGTAAAT-ATT-TACC--------TCT--------CTGCA---GGAAGTTCA-----AATACGCGTGCGCGATATTAGTA-ATTCTGGAAAATGATCGATTTCAGGT--GAAGCTC-AAA--ACA--GGTAAC-G-GCACC--ACA
gi|144753 : TTGGAATTAAT----GTTTCTTAAAG-AAAAATAAGTTTT---AAACTGTTTT-TTT-ACAA---CCGGAAAC-TGGGAATAA--------TGATAAAA------TACG-TTTTTT--CATGCTTGTATAACAAAATG-ACAATGTTACCTGT----ATGGGAAAC------A-TTG-TT---T--GT-GAGTA-TTTTTACA---CGATCAAT-AACACCGTGGCT-TGTGGTTGTAAAT-A-T-TTACA------TT-T--------CTGTA---GGAAGTTCA-----AATACGCGTGCGCGATATTCTTA-ATTCTGGGAAGTGATCGATTTCAGGTGACGT--TCGAAA--AC
gi|144754 : AAATTGAT----ATA-CTTAAAC-AAACCTTGCTTGAGCCAAG--TATTTATAC-A-AA---CTGAAAAA-TGGACATAG--------TGA-GAAA------CACA-TTTCTT--CA---------------ATG-ACTTTCTTGCTTGT----ATGAGAAGC------A------T---T--TT-G-----------CATTTCATTCAAT-AACCATATGCAT-ACTAGTTGTAAAT-A-A-TGCCT------AC-T--------GTGCA---AGAAGATGAATACTAGTATGCGTGCGCGATATTCATA-ATTCTCTTTAGCGTTCCAATTCAGAT--CGTGATCGAAA--ACA---TTTAC-G-GCACC--ATA
gi|144755 : AAAA-TGGACATAG--------TGA-GAAA------TACA-TTTTTT--CAGCTCTGTATCATAAAATG-ACTTTCTTACTTGT----ATCAAAAGC------A-TTA-TT---T--TT-GA-TA-TTTTT-CATTGCATTCAAT-GACCATGTGGAT-ACTTTTTGTAAAT-A-T-TGCCAATTTATAT-T--------ATGCA---GGAAGTTGA-----AATACGTGTGTGCAATATGCGTA-ATTCTGGGAAGTAAT
gi|144756 : atttctcaatgggtttattcctggatccatAAAAA-TG-ACATAACATCAATTTAA-AAAAAGAGTTTACA-TTTTTT--TGGGTCTGTATC-TGAA-TA-ACTTTCCT----GT----ACCTGAAGC------A-TTA-TT---T--TA-TA-TA-TTTTT-CATTGCATTCACT-GACCATGTATAT-ACTGTTTGTAAAT-A-T-TGACC------TT-T--------GTGGT---GGAAGTTG------ATTACGCACGTATGACATTCATA-ATTTTTGGAAGTGATCGA
gi|144757 : atttatttttttttaaTTTTATGT-A-AA---TCGAAAAAATCAACATAG--------TGA-GAAA------CACA-TTTTTT--CAGGTCTGTATCATAAAATG-ACTTTCTTACTCGT----ATAGGAAGT------A-CTA-TT---T--TT-GA-TA-CTTTT-CATTGCATTCAAT-GA-CACGTAAAA-ACTATTTGTAAAT-A-T-TACTA------AT-T--------GTGCA---GAAAGTTGA-----AATACGC-------ATA-TCATA-ATTCTTGGAAGTGATCGAATTCCGGT--TGTGATTGAAA--ACA--GGTTAC-A-GTACC--ATACtaacaggttacgc
gi|144758 : TCATGAAATG-ACTTTCTTACTTGT----ATCGAAAGC------A-TTA-TT---T---------A-TTTTT-CATTGCATTCAAT-GACCACGTAGAT-ACTGTTTGTAAAC-A-
gi|144759 : ATGCACTATCTTCCCTGT----ATCGAAAGC------A-TTA-TTGATT--TT-GA-TA-ATTCT-TATCGCATTCAAC-GAACAAGTGGCA-ACTGTTTGTAAAT-A-A-TGACA---------T--------GTGCACAGGGAA---GA-----AA--------------------A-ATTCTTGGAAGTGATCAAATTCACCT--GGTGATTGAAA--ACACGGACTGCTGTGCACC--ATA
gi|144760 : ATGCACTATCTTCCCTGT----ATCGAAAGC------A-TTA-TTGATT--TT-GA-TA-ATTCT-TATCGCATTCAAC-GAACAAGTGGCA-ACTGTTTGTAAAT-A-A-TGACA---------T--------GTGCACAGGGAA---GA-----AA--------------------A-ATTCTTGGAAGTGATCAAATTCACCT--GGTGATTGAAA--ACACGGACTGCTGTGCACC--ATA
gi|144761 : ATGCACTATCTTCCCTGT----ATCGAAAGC------A-TTA-TTGATT--TT-GA-TA-ATTCT-TATCGCATTCAAC-GAACAAGTGGCA-ACTGTTTGTAAAT-A-A-TGACA---------T--------GTGCACAGGGAA---GA-----AA--------------------A-ATTCTTGGAAGTGATCAAATTCACCT--GGTGATTGAAAACACA--GACTGCTGTGCACC--ATA
gi|144762 : TTACTTGTTTTCATTCGAAGC------A-TTA-TT---T--TT-TA-CA-TTTTT-AATTGCAGTCAAT-GACCACGTGGAT-ACTGTTTGTATAT-A-T-TGACA------TT-T--------GTAAA---GGAATTTGA-----A
gi|144763 : AAAC------A-TTA-TT---T--TT-TA-TA-TTCCT-CATTGCATTCAAT-GACCACGC-GATAACTATTTGTAAAT-A-T-TGCCA------AT-T--------GTGCA---GGAAGTTGT-----AATGCGCGTGTGCGATATTCATA-ATTTTCGGAAGTGATTGAATTCAGGT--CGGGATCAAAA--TCA--GGTCAC-G-GCACC--ATA
gi|144764 : TA-TT---T--TT-CA-TAATTTTT-TACTGCTTTAAAT-GACCACATGGAT-ACTATTTGTAAAT-A-T-TTCCA------AT-T--------GTGCA---GGAAGTTGA-----TTTATGCGTGTGCGATATTCATA-ATTCTCTGAAATAATAGAATTCAGGT--CGTGATCGAAA--ACA--GGTTAC-A-GCACC--
gi|144765 : -TTTTT-CGTTACATTCAAT-GATCACGTGGAT-AATGTTTGTAAAT-A-T-TGACA------TT-T--------
gi|144766 : CAATCAACCACGTGGAT-ACTATTTGTAAAT-A-T-TGCCA------AT-T--------GTTCA---GGAAATTG------AATAC
gi|144767 : CAATCAACCACGTGGAT-ACTATTTGTAAAT-A-T-TGCCA------AT-T--------GTTCA---GGAAATTG------AATAC
gi|144768 : CAATCAACCACGTGGAT-ACTTTTTGTAAAT-A-T-TGCCA------AT-T--------GTGCA---GGAAAATG------AATAC-CATACCCGATGT
gi|144769 : CAATCAACCACGTGGAT-ACTATTTGTAAAT-A-T-TGACA------AT-T--------ATGCA---GGAAATTG------AATAC-CATTCCCGATGT
gi|144770 : CAATCAACCACGTGGAT-ACTATTTGTAAAT-A-T-TGCCA------AT-T--------GTGCA---GGAAATTG------AATAC
gi|144771 : ACCACGTGGAT-ACTATTTGTAAAT-A-T-TGCCA------AT-T--------GTGCA---GGAAATTG------AATAC-CATACCCAATGT
gi|144772 : CATGTGGAT-ACTTTTTTTAAAT-A-T-TGATA------TT-T--------GTGCA---GGAAGATGA-----AATATGCATGCGTGAT----------TCTCGGAAGTGATCAAATTCAGGT--TGTGATTGAAA--ACA--CATTAA-A-GCACC--
gi|144773 : CATGTGGAT-ACTTTTTGTAAAT-A-T-TGCCA------AT-T--------GTGCA---GGAAATTG------AATAC-CATACCCAATGT
gi|144774 : GTAAAT-A-G-TGATA------TT-C--------AT-CA---GGAAGTTGA-----AATATGCATGCATGA---------A--CTCGGAATTGATCAAATTCAGGT--TGTAATCAAAA--ACC--GTTTAA-G-TCACC--
gi|144775 : GTAAAT-A-TATCTCA------AT-TTTACCTTTGTGCA---GTAAGGTTA-----AGTACGTGTGCGCAATGTCCGTA-ATTTTCGGAAGTGATTGAATTCAGGT--TGTAATATATA--ACA--GGTTAT-A-ACGCA--ATA
gi|144776 : AT-A-T-TGCCA------AT-TTTT-----GTGCA---GAAAGCTGA-----AATATGCGTGCGCTATATTTGTA-ATTCTGGGAAGTGATCGATTTCAGGT--GATGCTCAAAA--ACA--GGTAAC-G-GCACC--ATAC
gi|144777 : TTGA-----AATAAGCTTGCACAATATTCGTA-ATTCTGGAGAGCGACCGATTTCAGGT--GGTGGTTGAAA--ACG--GGTTAC-G-GCACC--AT
gi|144778 : CGCGATATTCGTT-ATTATGGGAAGTGATCGATTTCAGGT--GACGCTCGAAA--ACA--G
gi|144779 : CGATATTAATA-ATTCTCGGAAGTGATCGAATTCAGGT--CATGATCGAAA--ATA--AGTTAC-G-GCACC--ATAC
gi|144780 : CGATATTCATA-ATTCTCGGAAGTGATCGAATTCAGGT--CATGATCGAAA--ATA--CGTTAC-G-GTACC--ATAC
gi|144781 : CGATATTCATA-ATTCTCGGAAGTGATCGAATTCAGGT--CATGATCGAAA--ATA--CGTTAC-G-GCGTC--ATAC
gi|144782 : CGATATTCATA-ATTCTCGGAAGTGATCGAATTCAGGT--CATGACCGAAA--ATA--CGTTTA-G-GCACC--ATAC
gi|144783 : GATATTCATA-ATTCTCGGAAGTGATCGAATTCGGGT--CATGATCGAAA--ATA--CGTTAC-G-GCACC--ATAC
gi|144784 : TA-ATTCTGGGAAGTGATCGATTTCATGT--GACGCTCGAAA--ACG--GGTTAC-G-GCACC--ATA
Alignments
lowQualScore : 111111
lowQualScore : 33 2 555 88888 77777 2 2 2 2 2 55555 666 33 2 2 1 0 3 5555 4 2 1 0 66 2 2 333 2 77777777 2 555555 2 22 5 3333 222222 1 1 888 22 6666 1 1 6 1 1 1 1 1 0 7777777 1 66666666 666 888888 3 2 0 1 2 1 666 0 11 33 4 4 11
lowQualScore : .. . ... ..... ..... . . . . . ..... ... .. . . . . . .... . . . . .. . . ... . ........ . ...... . .. . .... ...... . . ... .. .... . . . . . . . . . ....... . ........ ... ...... . . . . . . ... . .. .. . . ..
lowQualScore : 77 5 666 99999 00000 7 7 7 7 7 77777 888 77 5 5 2 1 4 0000 7 4 0 2 99 2 2 999 0 22222222 0 888888 0 88 2 5555 000000 6 5 111 11 6666 5 5 5 2 3 1 1 1 2 9999999 1 00000000 000 111111 2 1 1 1 3 2 222 5 77 55 1 1 99
consensus : CCGGAACCTCTATAATTTCTGACA--TGCGCAAN--CG-A-AAT--AT-TT-TATAAC-T-T-T-T-G---ACCTTGACCTGT-ATTGCATCAG--TTTTCAGCAGACG-T-GTTTGAAATCGAT----ATT-CGTAAAC-AAACCTAGCNTTTGTCAAG--GTTTTATGT-A-AA---CTGAAAAA-TGGACATAG--------TGA-GAAA------TACA-TTTTTT--CAGGTCTGTATCATAAAATG-ACTTTCTTACTTGT----ATCGGAAGC------A-TTA-TT---T--TT-GA-TA-TTTTT-CATTGCATTCAAT-GACCACGTGGAT-ACTGTTTGTAAAT-A-T-TGCCA------AT-T--------GTGCA---GGAAGTTGA-----AATACGCGTGCGCGATATTCGTA-ATTCTCGGAAGTGATCGAATTCAGGT--CGTGATCGAAA--ACA--GGTTAC-G-GCACC--ATAC
Reference ( family-468 ) : CCGGAACCTCTATAATTTCTGACA--TGCGCAAN--CG-A-AAT--AT-TT-TATAAC-T-T-T-T-G---ACCTTGACCTGT-ATTGCATCAG--TTTTCAGCAGACG-T-GTTTGAAATCGAT----ATT-CGTAAAC-AAACCTAGCNTTTGTCAAG--GTTTTATGT-A-AA---CTGAAAAA-TGGACATAG--------TGA-GAAA------TACA-TTTTTT--CAGGTCTGTATCATAAAATG-ACTTTCTTACTTGT----ATCGGAAGC------A-TTA-TT---T--TT-GA-TA-TTTTT-CATTGCATTCAAT-GACCACGTGGAT-ACTGTTTGTAAAT-A-T-TGCCA------AT-T--------GTGCA---GGAAGTTGA-----AATACGCGTGCGCGATATTCGTA-ATTCTCGGAAGTGATCGAATTCAGGT--CGTGATCGAAA--ACA--GGTTAC-G-GCACC--ATAC
gi|144736 : CCGGAACCGCTATAATTTCTGATA--TGCACAAG--CG-A-AAT--AT-TT-TATAAC-T-T-T-T-G---ACCTTGACCTGT-ATTGCATCAG--CTTTCAGCAGACA-T-GTTTGAAATCAAT----ATT-CGTAAAC-AAACCTAGCATTTGTCAAG--GTTTTATGT-A-AA---CTGAAAAA-TGGACATAG--------TGA-AAAA------TACAATTTTTT--CAGGTCTTTACCATAAAATG-ACTTTCTCACTTGT----ATCGGAAGC------A-TTA-CT---T--TT-GA-TA-TTTTT-CATTGCATTCAAT-GATCACGTGGAT-ACTGTTTGTAAAT-A-T-TGCCA------AT-T--------GTGCA---GTAAGTTGA-----AATACGCGTGCACGAAATTCGTA-ATTATGGGAAGTGATCGATTTCAGGT--GACACTCAAAA--ACA--GGTTAC-G-GCACC--ATA
gi|144737 : CCGGAACCTCGATAATTTCTGACA--TGCACAAG--CA-A-AAT--AT-TT-TGTAAC-T-T-T-C-G---ACCTTGACCTGT-ATTGCATCAG--TTTTCAGCAGACG-T-GTATGAAATCGAT----ATT-CGTAAAC-AAACCTAGCATTTGTGGAG--GTTTTATGT-A-AA---CTGAAAAA-TGGACCTAG--------TGA-GAAA------TACA-TTTTTT--CAGGTCTGTACCATAAAATG-ACTTTCTCACTTCT----ATCGGAAGC------A-TTA-TT---T--TT-GA-TA-TTTTT-CTTTGCATTCAAT-GACCATGTGGAT-ACTGTTTGTAAAT-A-T-TGCCA------AT-A--------GTGTA---TGAAGTTGA-----AATACGCTTGCGCGATATTCGTA-ATTATGGGAAGTGATCGATTTCAGGT--GACGCTCGAAA--ACA--GGTTAC-G-GCACC--ATAC
gi|144738 : CCGGAACCTCTGTAATTTCTGACA--TGCGCAAG--CG-A-AAT--AT-TT-TATAAC-T-T-T-T-G---ACCTTGACCTGT-ATTGCATCAG--TTTTCAGCAGACG-T-GTTTGAAACTGAT----ATT-TTTAAAT-AAACCTAGCATTTGTCGAG--GTTTTATGT-T-AA---CTGAAAAA-T--------------------GAAA------TACA-TTTTTT--CAGGTCTGTACCATAAAAAG-ACTTTCTCACTTGT----ATCGGAAGC------A-TTATTT---T--TT-TA-TA-TTTTT-CTTTGTATTCAAA-GACCCCGTGGAT-ACTGTTTGTGAAT-A-T-TGCCA------AT-T-----------------------------------------GCGATATTCGTA-ATTATGGGAATTGGTCGATTTCAGGT--TACGCTCGAAA--ACA--GGTTAC-G-ACACC--ATAC
gi|144739 : CCGGAATTCATATAATTTCTGAAA--TGCGC-----------AT------------AC-T-T-T-T-G---ACCTTGACCTGT-ATTGCATCAG--TTTTCCACAGACG-T-GATTGGAATCGAT----ATC-CGTAAAC-AAACCTAGCGTTTATCACA--GCTTTATGT-A-AA---CTGAAAAT-TGGACATAG--------TGA-GAAA-------AAA-AATGTT--CAGGTCTGTATCATAAAATG-ACTTTCTTACTTAT----ATCGGAAGC------A-TTA-TT---T--TTCTA-TA-TTTAA-CACTCCATTCAAT-GATCACGTGGAT-ACTATTTGT-AAT-A-T-TGCCA------AT-T--------GTGCT---GGAAGTCGA-----AATACGCTTGCGCGATATTCATA-ATTCTCGGAAGTGATCGAATTCTGGT--CGTGATCG-AA--ACA--GGTTAC-A-GCACC--ATAC
gi|144740 : CTGAAACCTCTATAATTTCTGACA--TGCACAAC--CA-A-AAT--AT-TT-TATAAC-T-T-T-T-G---ACCTTGACCTGT-ATTGCATTAC--TTTTCAGCAGTCG-T-GTTTGAAATCGAT----ATT--GTGAAC-
gi|144740 : TGT-G-AA---CTGAAAAA-TGGATATAG--------TGA--AAA------TACA-TTTTTT--CAGGTCTCTATCCTAAAATG-ACTTTCTTACGTGT----ATCGGAAGC------A-TTA-TT---T--TT-TA-TA-TTTTT-CATAGCATTCATT-GACCAAGTGGAT-A-TGTTTGTAAAT-A-T-CACCA------AC-T--------GTGCA---CAAAGTTGA-----AATACGCGTGCATGATATTCGTA-ATTCTGGGATGTAATCGATTTCAGGT--GATGCTTGAAA--ACA--GGTTGC-G-GCACC--tgaaaaatggatatagtgaaaatacattttttcaggtctctatcctaaaatgactttcttacgtgtatcggaagcattattttttatatttttcatagcattcattgaccaagtggatatgtttgtaaatatcaccaactgtgcacaaagttgaaatacgcgtgcatgatattcgtaattctgggatgtaatcgatttcaggtgatgcttgaaaacaggttgcggcacca
gi|144741 : ctgaaacctctataatttctgacatgcacaaccaaaatattttataacttttgaccttgacctgtattgcattacttttcagcagtcgtgtttgaaatcgatatCCGGAACTTCTATAATTTCTCATA--TGCTCAGT--CG-----TTCAT-GTGTATAAC-T-T-T-T-T---ACATTGACCGAT-TATGAATCAG--TTTTCAGCAGAAG-TGGTTTG-GATTGAC----ACT-TTTAAAC-AAACCTAGCTATTATCAAC--CTTTTAAGT-A-AA---CTGAAAAA-TAGACACAG--------TGA-GAAA------TACA--TTTTT--CTGGTCAGTATAATAAAAAT-ACTTTCTTACTTTT----ATCAGAAGC------A-TT--TG---T--TA-GA-TA-ACATT-CAATGCATTCAAT-GACCACGTGGGT-ACTATTTGTAAAT-A-T-TGACA------TT-T--------ATACA---GGAAGTTAA-----AATACATGTGCGCGATAATCGTATTTTCTCGAAAGTGATCGAATTCAGGT--TGTGAACGTAA--ATA--GGATAC-G-GCATA--ATA
gi|144742 : CCGGAACCTCAA-AAGATCTGACA--TGCGCAGT--CG-C-C-T--ATGTT-TATAAC-T-TAT-T-G---ACCTTGACCTATTATGGCATCAG--TTTTCAGCAGACG-T-G---------GAT------C-CGTAAAC-AAACCTAGCTTTTGTCATG--GTTTTATGT-A-AA---CTCAAATA-TGGACATAG--------TGA-GAAA------TACA-ATTTTT--CAG--------CA---------CTTTCTTACTTGG----ACAGGAAAC------A-TTA-TT---T--TT-GA-TA-GTTTT-TACTGCTTTCAAT-GACCACGTGGAT-AACATTTGT---T-A-T-AACCT-------T-T--------GTGCA---TGAAGCTGA-----AATACGTTTGTGCGATATTCGTA-GTTCTCCGAAGAGATCGAATTCAGAC--TGTGAACGAAA--ACA--GGTTAG-G-GCACCCTATAC
gi|144743 : CTGGAACATCTATACTTTCTGACA--TGCGCAGT--CG-A-CAT--GT-TA--ATAGC-T-T-CAT-G---ACCTTAACTAGT-TATGCATCAG--TTTTCAGCAGAAG-T--CATGGAATTGAT----ATT-CGTTAAC-AAACCTTGCTTTTGTCATG--GTTTTAGGT-T-AA---C-----AA-TAGACATAG--------TGA-GAAA------TATA-TTTTT---CAGATCTGTAACA---AATG-ACTTTCTTACTTAT----ACCGGAGAC------A-TTA-TA---T--TC-TA-TA-TTCAT-CATTGCATTCAAT-GCCCATATGGAT-ACTGTTTG-AAATCA-T-TGATAT-----TT-T--------GTGCA---GGAAGTTG-------ATACCCTTGCGCAATATTCATA-ATTCTCGGAAGTGATCGAATTCAGGT--C
gi|144744 : CCGGAACCACTATTATTTCTGACA--TGTGCAGT--C----AGTC-ATGTT-TATAAC-TGT-T-T-T---ACCTTGAAATGT-TATGCATCTG--TTTTCAGCAGACA-T-GATTAGAATTGAT----ATT-CGTAAACAAAACCTAGCTGTTGTCAAG--GTTTTATGTCA-AAGTTCTGCAAAA-TGGAAAAAG--------TGA-GAAA------TACA-TTTTTA--CAGGTCT-CATCAT---ATG-ACTGT-TTATTTTC----ATCA-----------A-TGA-TT---TCATT-TA-TA-TTTTT-tcga
gi|144745 : CCGGAACCTCGATAATTTCTGACA--TGCACAAG--CG-A-AAT--AT-TT-TATAAC-T-T-T-C-G---ACCt
gi|144745 : CGCGATATTCGTT-ATTATGGGAAGTGATCGATTTCAGGT--GACGCTCGAAA--ACA--Ggcgatattcgttattatgggaagtgatcgatttcaggtgacgctcgaaaacagcaatcgtaaaacatcgggtattt
gi|144746 : ccggaacctcgataatttctgacatgcacaagcgaaatattttataactttcgacGGAACCTCTATAATTTCTTACA--TGCACAAG--TG-A-AAT--AT-TT-TATAAC-T-T-T-T-T---ACCTTGACCTGT-ATTGCATCAC--TTTTCAGCAAACG-T-GTTTGAAATCAAT----ATC-CGTAAAC-AAACCTAGCATTTATCAAG--GTTTTATGT-A-AA---CTGAAAAA-TGGACATAG--------TGA-GAAA------TACA-TTTGTT--CAGGTTTGTATCATAAAATG-ACTTTCTTACGTGT----ATCGGAAGCATTATGA-TTA-TT---T--TT-------TTTTT-CATTGCATTCAAT-GATAACGTGGAT-ACTTTTTGTAAAT-A-T-TACCA------AT-T--------GTGTA---GGAAGTTGA-----AATACTTGTGCACGATATACGTA-ATTCTGGGATGTGGTCGATTTCAGGT--GATGCTCGAAA--ACG--GGTTAC-G-GCACC--ATACcaatcgtaaaacatcgggtattt
gi|144747 : GGAACCTCTATAATTTCTTACA--TGCACAAG--TG-A-AAT--AT-TT-TATAAC-T-T-T-T-T---ACCTTGACCTGT-ATTGCATCAC--TTTTCAGCAAACG-T-GTTTGAAATCAAT----ATC-CGTAAAC-AAACCTAGCATTTATCAAG--GTTTTATGT-A-AA---CTGAAAAA-TGGACATAG--------TGA-GAAA------TACA-TTTGTT--CAGGTTTGTATCATAAAATG-ACTTTCTTACGTGT----ATCGGAAGCATTATGA-TTA-TT---T--TT-------TTTTT-CATTGCATTCAAT-GATAACGTGGAT-ACTTTTTGTAAAT-A-T-TACCA------AT-T--------GTGTA---GGAAGTTGA-----AATACTTGTGCACGATATACGTA-ATTCTGGGATGTGGTCGATTTCAGGT--GATGCTCGAAA--ACG--GGTTAC-G-GCACC--ATAC
gi|144748 : GGAACTTTTATAAGTTCTGACAATTGCACAAT--CA-A-G-------TT-TATGAC-T-T-T-T-TTTTATCTTCACTTGT---TATGTTAGAGTTTTCAG-----------TTGGAATTGATGAAAATT-TGTAAAC-AAACCTAGCTTGTTTTATG--GTTTTATGT-A-AA---CTGAAAAA-TGGACATAG--------TGA-GAAA------TACA--TTTTT--CAGGT
gi|144749 : TATAATTTCTGACA--TACGCAGT--CGTT-CGT--A--TG-TATAACAT-T-T-T-G---ACCTTGACTGGT-TATAAATCAA--TTTTCAGCAGACG-T-AGTTGATAT
gi|144750 : TGACA--TGC--AATTTCG-ATCAT--GT-TT--ATTAC-T-T-T-TTG---ATCTTGACCTGT-TTTGCATCAG--TTTTCAGCA--------TTGGAAAT-GAA----ATT-CATAAAA-AAAC-TAGCTTTTGTTATG--GTTTTATGT-T-TA---TTGACAAA--AGACATAG--------TGA-GAAA------TACT-TTTTCC--CCAGTCTGTATAATAAAATG-ACTGTCTTTCTTGT----ATTGGTAGA------A-TTA-TT---T--TT-TA-TA-TTTTT-CATTGCATTTGAT-GACCACATGGAT-ACTGTTTGAGAA------------------------------TGCA---GGATGTTGC-----AATATATGTGCAT--TATTTGTA-AATCTCTGAAGTAAGTGAAATCAGGT--TGTGATCGAAA--ACA--TGTTAT-G-ACACC--ATAC
gi|144751 : TCAG--TTTTCAGCAAACG-C-GTTTGAACTAGAT----ATT-CATAAAC-AAACTTAGGGTTTGTCGAG--GTTTTATGT-A-AT---CTGAAAAA-TGGCCATAA--------TGA-GAAA------CACA-TTTTTT--CAGGTCTGTATCATAAAAGG-A-------A-TTGT----ATCAGAACCTTT---ACTTA-TT---T--TT-G-----TTTTT-CATTGCATTTAAT-GACCACGAGGAT-ACTATT------T-A-T-TCATA------AT-T--------CTG-----GGAAGT--A-----TACACACGT
gi|144752 : TCAGCAGGCGAC-GTT-GGAATTAAT----GTTTCTTAAAC-AAGAATA--ATTTTTTAAACTGTTTTTTGA-C-AA---CCGAAAAA-TGGGAATA---------TGC-GAAA------TACG-TTTTTTTTCATGCTTGTATAATAAAATG-ACGATGTTACCTGT----ATGGGAAGC------A-TTG-TT---T--GT-GAGTA-TTTTT---TCAAGATCATT-AACACCGTGGCT-TCTTGTTGTAAAT-ATT-TACC--------TCT--------CTGCA---GGAAGTTCA-----AATACGCGTGCGCGATATTAGTA-ATTCTGGAAAATGATCGATTTCAGGT--GAAGCTC-AAA--ACA--GGTAAC-G-GCACC--ACA
gi|144753 : TTGGAATTAAT----GTTTCTTAAAG-AAAAATAAGTTTT---AAACTGTTTT-TTT-ACAA---CCGGAAAC-TGGGAATAA--------TGATAAAA------TACG-TTTTTT--CATGCTTGTATAACAAAATG-ACAATGTTACCTGT----ATGGGAAAC------A-TTG-TT---T--GT-GAGTA-TTTTTACA---CGATCAAT-AACACCGTGGCT-TGTGGTTGTAAAT-A-T-TTACA------TT-T--------CTGTA---GGAAGTTCA-----AATACGCGTGCGCGATATTCTTA-ATTCTGGGAAGTGATCGATTTCAGGTGACGT--TCGAAA--AC
gi|144754 : AAATTGAT----ATA-CTTAAAC-AAACCTTGCTTGAGCCAAG--TATTTATAC-A-AA---CTGAAAAA-TGGACATAG--------TGA-GAAA------CACA-TTTCTT--CA---------------ATG-ACTTTCTTGCTTGT----ATGAGAAGC------A------T---T--TT-G-----------CATTTCATTCAAT-AACCATATGCAT-ACTAGTTGTAAAT-A-A-TGCCT------AC-T--------GTGCA---AGAAGATGAATACTAGTATGCGTGCGCGATATTCATA-ATTCTCTTTAGCGTTCCAATTCAGAT--CGTGATCGAAA--ACA---TTTAC-G-GCACC--ATA
gi|144755 : AAAA-TGGACATAG--------TGA-GAAA------TACA-TTTTTT--CAGCTCTGTATCATAAAATG-ACTTTCTTACTTGT----ATCAAAAGC------A-TTA-TT---T--TT-GA-TA-TTTTT-CATTGCATTCAAT-GACCATGTGGAT-ACTTTTTGTAAAT-A-T-TGCCAATTTATAT-T--------ATGCA---GGAAGTTGA-----AATACGTGTGTGCAATATGCGTA-ATTCTGGGAAGTAAT
gi|144756 : atttctcaatgggtttattcctggatccatAAAAA-TG-ACATAACATCAATTTAA-AAAAAGAGTTTACA-TTTTTT--TGGGTCTGTATC-TGAA-TA-ACTTTCCT----GT----ACCTGAAGC------A-TTA-TT---T--TA-TA-TA-TTTTT-CATTGCATTCACT-GACCATGTATAT-ACTGTTTGTAAAT-A-T-TGACC------TT-T--------GTGGT---GGAAGTTG------ATTACGCACGTATGACATTCATA-ATTTTTGGAAGTGATCGA
gi|144757 : atttatttttttttaaTTTTATGT-A-AA---TCGAAAAAATCAACATAG--------TGA-GAAA------CACA-TTTTTT--CAGGTCTGTATCATAAAATG-ACTTTCTTACTCGT----ATAGGAAGT------A-CTA-TT---T--TT-GA-TA-CTTTT-CATTGCATTCAAT-GA-CACGTAAAA-ACTATTTGTAAAT-A-T-TACTA------AT-T--------GTGCA---GAAAGTTGA-----AATACGC-------ATA-TCATA-ATTCTTGGAAGTGATCGAATTCCGGT--TGTGATTGAAA--ACA--GGTTAC-A-GTACC--ATACtaacaggttacgc
gi|144758 : TCATGAAATG-ACTTTCTTACTTGT----ATCGAAAGC------A-TTA-TT---T---------A-TTTTT-CATTGCATTCAAT-GACCACGTAGAT-ACTGTTTGTAAAC-A-
gi|144759 : ATGCACTATCTTCCCTGT----ATCGAAAGC------A-TTA-TTGATT--TT-GA-TA-ATTCT-TATCGCATTCAAC-GAACAAGTGGCA-ACTGTTTGTAAAT-A-A-TGACA---------T--------GTGCACAGGGAA---GA-----AA--------------------A-ATTCTTGGAAGTGATCAAATTCACCT--GGTGATTGAAA--ACACGGACTGCTGTGCACC--ATA
gi|144760 : ATGCACTATCTTCCCTGT----ATCGAAAGC------A-TTA-TTGATT--TT-GA-TA-ATTCT-TATCGCATTCAAC-GAACAAGTGGCA-ACTGTTTGTAAAT-A-A-TGACA---------T--------GTGCACAGGGAA---GA-----AA--------------------A-ATTCTTGGAAGTGATCAAATTCACCT--GGTGATTGAAA--ACACGGACTGCTGTGCACC--ATA
gi|144761 : ATGCACTATCTTCCCTGT----ATCGAAAGC------A-TTA-TTGATT--TT-GA-TA-ATTCT-TATCGCATTCAAC-GAACAAGTGGCA-ACTGTTTGTAAAT-A-A-TGACA---------T--------GTGCACAGGGAA---GA-----AA--------------------A-ATTCTTGGAAGTGATCAAATTCACCT--GGTGATTGAAAACACA--GACTGCTGTGCACC--ATA
gi|144762 : TTACTTGTTTTCATTCGAAGC------A-TTA-TT---T--TT-TA-CA-TTTTT-AATTGCAGTCAAT-GACCACGTGGAT-ACTGTTTGTATAT-A-T-TGACA------TT-T--------GTAAA---GGAATTTGA-----A
gi|144763 : AAAC------A-TTA-TT---T--TT-TA-TA-TTCCT-CATTGCATTCAAT-GACCACGC-GATAACTATTTGTAAAT-A-T-TGCCA------AT-T--------GTGCA---GGAAGTTGT-----AATGCGCGTGTGCGATATTCATA-ATTTTCGGAAGTGATTGAATTCAGGT--CGGGATCAAAA--TCA--GGTCAC-G-GCACC--ATA
gi|144764 : TA-TT---T--TT-CA-TAATTTTT-TACTGCTTTAAAT-GACCACATGGAT-ACTATTTGTAAAT-A-T-TTCCA------AT-T--------GTGCA---GGAAGTTGA-----TTTATGCGTGTGCGATATTCATA-ATTCTCTGAAATAATAGAATTCAGGT--CGTGATCGAAA--ACA--GGTTAC-A-GCACC--
gi|144765 : -TTTTT-CGTTACATTCAAT-GATCACGTGGAT-AATGTTTGTAAAT-A-T-TGACA------TT-T--------
gi|144766 : CAATCAACCACGTGGAT-ACTATTTGTAAAT-A-T-TGCCA------AT-T--------GTTCA---GGAAATTG------AATAC
gi|144767 : CAATCAACCACGTGGAT-ACTATTTGTAAAT-A-T-TGCCA------AT-T--------GTTCA---GGAAATTG------AATAC
gi|144768 : CAATCAACCACGTGGAT-ACTTTTTGTAAAT-A-T-TGCCA------AT-T--------GTGCA---GGAAAATG------AATAC-CATACCCGATGT
gi|144769 : CAATCAACCACGTGGAT-ACTATTTGTAAAT-A-T-TGACA------AT-T--------ATGCA---GGAAATTG------AATAC-CATTCCCGATGT
gi|144770 : CAATCAACCACGTGGAT-ACTATTTGTAAAT-A-T-TGCCA------AT-T--------GTGCA---GGAAATTG------AATAC
gi|144771 : ACCACGTGGAT-ACTATTTGTAAAT-A-T-TGCCA------AT-T--------GTGCA---GGAAATTG------AATAC-CATACCCAATGT
gi|144772 : CATGTGGAT-ACTTTTTTTAAAT-A-T-TGATA------TT-T--------GTGCA---GGAAGATGA-----AATATGCATGCGTGAT----------TCTCGGAAGTGATCAAATTCAGGT--TGTGATTGAAA--ACA--CATTAA-A-GCACC--
gi|144773 : CATGTGGAT-ACTTTTTGTAAAT-A-T-TGCCA------AT-T--------GTGCA---GGAAATTG------AATAC-CATACCCAATGT
gi|144774 : GTAAAT-A-G-TGATA------TT-C--------AT-CA---GGAAGTTGA-----AATATGCATGCATGA---------A--CTCGGAATTGATCAAATTCAGGT--TGTAATCAAAA--ACC--GTTTAA-G-TCACC--
gi|144775 : GTAAAT-A-TATCTCA------AT-TTTACCTTTGTGCA---GTAAGGTTA-----AGTACGTGTGCGCAATGTCCGTA-ATTTTCGGAAGTGATTGAATTCAGGT--TGTAATATATA--ACA--GGTTAT-A-ACGCA--ATA
gi|144776 : AT-A-T-TGCCA------AT-TTTT-----GTGCA---GAAAGCTGA-----AATATGCGTGCGCTATATTTGTA-ATTCTGGGAAGTGATCGATTTCAGGT--GATGCTCAAAA--ACA--GGTAAC-G-GCACC--ATAC
gi|144777 : TTGA-----AATAAGCTTGCACAATATTCGTA-ATTCTGGAGAGCGACCGATTTCAGGT--GGTGGTTGAAA--ACG--GGTTAC-G-GCACC--AT
gi|144778 : CGCGATATTCGTT-ATTATGGGAAGTGATCGATTTCAGGT--GACGCTCGAAA--ACA--G
gi|144779 : CGATATTAATA-ATTCTCGGAAGTGATCGAATTCAGGT--CATGATCGAAA--ATA--AGTTAC-G-GCACC--ATAC
gi|144780 : CGATATTCATA-ATTCTCGGAAGTGATCGAATTCAGGT--CATGATCGAAA--ATA--CGTTAC-G-GTACC--ATAC
gi|144781 : CGATATTCATA-ATTCTCGGAAGTGATCGAATTCAGGT--CATGATCGAAA--ATA--CGTTAC-G-GCGTC--ATAC
gi|144782 : CGATATTCATA-ATTCTCGGAAGTGATCGAATTCAGGT--CATGACCGAAA--ATA--CGTTTA-G-GCACC--ATAC
gi|144783 : GATATTCATA-ATTCTCGGAAGTGATCGAATTCGGGT--CATGATCGAAA--ATA--CGTTAC-G-GCACC--ATAC
gi|144784 : TA-ATTCTGGGAAGTGATCGATTTCATGT--GACGCTCGAAA--ACG--GGTTAC-G-GCACC--ATA
blockSeqs : AT A TTT TTCG TCAT G A G A A TTTT TAT AG A G T C GAAA T A A CT C C GTT A CATCAATT T AGAGTT . TT C TTTC ATTATG C T GAT CA CTA A A C A G C T A ATTTATA C TTACCTTT CAG AATACT G T T G T GAC AC CG T T CT
blockSeqs : . G G ATCA CATG . . . . . TG AT . . . T T . T . A CT . . . . . . . . . C . ATTATG . . GAT . GAG . . C . G . . . TT . TTT CAG A G T . G T G . CG T T .
blockSeqs : . G G AAA ATG . . . . . G AT . . . A C . . . G . . . . . . . . . . C . TTT . . GAT . GAG . . C . A . . . A . . CAG A G G . C A T . . T T .
blockSeqs : . A C AAA AT . . . . . G AT . . . T C . . . T . . . . . . . . . . . . . . . . . GA . . C . G . . . A . . . A A G . G T C . . . . .
blockSeqs : . T T AAA AT . . . . . G AT . . . T T . . . T . . . . . . . . . . . . . . . . . TA . . C . A . . . A . . . A G T . C A G . . . . .
blockSeqs : . G T ACA AT . . . . . G TA . . . C T . . . T . . . . . . . . . . . . . . . . . TA . . . . A . . . A . . . A C T . C A T . . . . .
blockSeqs : . G T AAA GT . . . . . T TA . . . A T . . . T . . . . . . . . . . . . . . . . . GA . . . . G . . . T . . . A T G . C A T . . . . .
blockSeqs : . G T AAA AT . . . . . G TA . . . T C . . . A . . . . . . . . . . . . . . . . . GA . . . . T . . . A . . . A T G . G T C . . . . .
blockSeqs : . A G AAA AT . . . . . G AT . . . T C . . . A . . . . . . . . . . . . . . . . . TA . . . . T . . . A . . . C A G . G T G . . . . .
blockSeqs : . A G CC AT . . . . . T AT . . . G T . . . T . . . . . . . . . . . . . . . . . TA . . . . G . . . A . . . A A G . G T G . . . . .
blockSeqs : . A G AG GT . . . . . G TA . . . T A . . . T . . . . . . . . . . . . . . . . . TA . . . . A . . . T . . . A G G . C A G . . . . .
blockSeqs : . A T AG A . . . . . T TT . . . T T . . . G . . . . . . . . . . . . . . . . . GA . . . . T . . . A . . . A G G . G T T . . . . .
blockSeqs : . G T A . . . . . . T . . . . T T . . . A . . . . . . . . . . . . . . . . . TA . . . . G . . . T . . . A G G . G T G . . . . .
blockSeqs : . . . . . . . . . . G . . . . T . . . T . . . . . . . . . . . . . . . . . GA . . . . A . . . A . . . A G G . C A C . . . . .
blockSeqs : . . . . . . . T . . . . . . . . . . . . . . . . . GA . . . . T . . . T . . . A G A . G A T . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . GA . . . . G . . . A . . . A G G . T A G . . . . .
blockSeqs : . . . . . . . . . . . . . . . . GA . . . . A . . . A . . . A G G . T A G . . . . .
blockSeqs : . . . . . . . . . . . . . TA . . . . G . . . T . . . A G A . T A G . . . . .
blockSeqs : . . . . . . . . . . . . . TA . . . . G . . . A . . . T G A . T A C . . . . .
blockSeqs : . . . . . . . CA . . . . G . . . A . . . A G A . T A C . . . . .
blockSeqs : . . . . . . . G . . . . G . . . A . . . A G A . C A T . . . . .
blockSeqs : . . . . . . . G . . . . G . . . A . . . A G A . C A T . . . . .
blockSeqs : . . . . . . . . . . . A . . . A . . . A G A . C A T . . . . .
blockSeqs : . . . . . . . . . . A . . . A . . . A . G . C T G . . . . .
blockSeqs : . . . . . . . . G . . . T . . . A . G . C T G . . . . .
blockSeqs : . . . . A . . . A . . . . . T . G T G . . . . .
blockSeqs : . . A . . . T . . . . . . . G A C . . . . .
blockSeqs : . . T . . . A . . . . . . . G A C . . . . .
blockSeqs : . . A . . . A . . . . . . . C A C . .
blockSeqs : . . A . . . . . . . . . . . C A C . .
blockSeqs : . A . . . . . . . . . . . C A C .
blockSeqs : . T . . . . . . . . . C T G
blockSeqs : . T . . . . . . . . . C
blockSeqs : . . . . . . . . . G
blockSeqs : . . . . . . .
blockSeqs : . .
blockSeqCons :
originalCons : CCGGAACCTCTATAATTTCTGACA--TGCGCAAN--CG-A-AAT--AT-TT-TATAAC-T-T-T-T-G---ACCTTGACCTGT-ATTGCATCAG--TTTTCAGCAGACG-T-GTTTGAAATCGAT----ATT-CGTAAAC-AAACCTAGCNTTTGTCAAG--GTTTTATGT-A-AA---CTGAAAAA-TGGACATAG--------TGA-GAAA------TACA-TTTTTT--CAGGTCTGTATCATAAAATG-ACTTTCTTACTTGT----ATCGGAAGC------A-TTA-TT---T--TT-GA-TA-TTTTT-CATTGCATTCAAT-GACCACGTGGAT-ACTGTTTGTAAAT-A-T-TGCCA------AT-T--------GTGCA---GGAAGTTGA-----AATACGCGTGCGCGATATTCGTA-ATTCTCGGAAGTGATCGAATTCAGGT--CGTGATCGAAA--ACA--GGTTAC-G-GCACC--ATAC
finalCons : CCGGAACCTCTATAATTTCTGACA--TGCGCAAN--CG-A-AAT--AT-TT-TATAAC-T-T-T-T-G---ACCTTGACCTGT-ATTGCATCAG--TTTTCAGCAGACG-T-GTTTGAAATCGAT----ATT-CGTAAAC-AAACCTAGCNTTTGTCAAG--GTTTTATGT-A-AA---CTGAAAAA-TGGACATAG--------TGA-GAAA------TACA-TTTTTT--CAGGTCTGTATCATAAAATG-ACTTTCTTACTTGT----ATCGGAAGC------A-TTA-TT---T--TT-GA-TA-TTTTT-CATTGCATTCAAT-GACCACGTGGAT-ACTGTTTGTAAAT-A-T-TGCCA------AT-T--------GTGCA---GGAAGTTGA-----AATACGCGTGCGCGATATTCGTA-ATTCTCGGAAGTGATCGAATTCAGGT--CGTGATCGAAA--ACA--GGTTAC-G-GCACC--ATAC
Alignments
lowQualScore : 111111
lowQualScore : 33 2 555 88888 77777 2 2 2 2 2 55555 666 33 2 2 1 0 3 5555 4 2 1 0 66 2 2 333 2 77777777 2 555555 2 22 5 3333 222222 1 1 888 22 6666 1 1 6 1 1 1 1 1 0 7777777 1 66666666 666 888888 3 2 0 1 2 1 666 0 11 33 4 4 11
lowQualScore : .. . ... ..... ..... . . . . . ..... ... .. . . . . . .... . . . . .. . . ... . ........ . ...... . .. . .... ...... . . ... .. .... . . . . . . . . . ....... . ........ ... ...... . . . . . . ... . .. .. . . ..
lowQualScore : 77 5 666 99999 00000 7 7 7 7 7 77777 888 77 5 5 2 1 4 0000 7 4 0 2 99 2 2 999 0 22222222 0 888888 0 88 2 5555 000000 6 5 111 11 6666 5 5 5 2 3 1 1 1 2 9999999 1 00000000 000 111111 2 1 1 1 3 2 222 5 77 55 1 1 99
consensus : CCGGAACCTCTATAATTTCTGACA--TGCGCAAN--CG-A-AAT--AT-TT-TATAAC-T-T-T-T-G---ACCTTGACCTGT-ATTGCATCAG--TTTTCAGCAGACG-T-GTTTGAAATCGAT----ATT-CGTAAAC-AAACCTAGCNTTTGTCAAG--GTTTTATGT-A-AA---CTGAAAAA-TGGACATAG--------TGA-GAAA------TACA-TTTTTT--CAGGTCTGTATCATAAAATG-ACTTTCTTACTTGT----ATCGGAAGC------A-TTA-TT---T--TT-GA-TA-TTTTT-CATTGCATTCAAT-GACCACGTGGAT-ACTGTTTGTAAAT-A-T-TGCCA------AT-T--------GTGCA---GGAAGTTGA-----AATACGCGTGCGCGATATTCGTA-ATTCTCGGAAGTGATCGAATTCAGGT--CGTGATCGAAA--ACA--GGTTAC-G-GCACC--ATAC
Reference ( family-468 ) : CCGGAACCTCTATAATTTCTGACA--TGCGCAAN--CG-A-AAT--AT-TT-TATAAC-T-T-T-T-G---ACCTTGACCTGT-ATTGCATCAG--TTTTCAGCAGACG-T-GTTTGAAATCGAT----ATT-CGTAAAC-AAACCTAGCNTTTGTCAAG--GTTTTATGT-A-AA---CTGAAAAA-TGGACATAG--------TGA-GAAA------TACA-TTTTTT--CAGGTCTGTATCATAAAATG-ACTTTCTTACTTGT----ATCGGAAGC------A-TTA-TT---T--TT-GA-TA-TTTTT-CATTGCATTCAAT-GACCACGTGGAT-ACTGTTTGTAAAT-A-T-TGCCA------AT-T--------GTGCA---GGAAGTTGA-----AATACGCGTGCGCGATATTCGTA-ATTCTCGGAAGTGATCGAATTCAGGT--CGTGATCGAAA--ACA--GGTTAC-G-GCACC--ATAC
gi|144736 : CCGGAACCGCTATAATTTCTGATA--TGCACAAG--CG-A-AAT--AT-TT-TATAAC-T-T-T-T-G---ACCTTGACCTGT-ATTGCATCAG--CTTTCAGCAGACA-T-GTTTGAAATCAAT----ATT-CGTAAAC-AAACCTAGCATTTGTCAAG--GTTTTATGT-A-AA---CTGAAAAA-TGGACATAG--------TGA-AAAA------TACAATTTTTT--CAGGTCTTTACCATAAAATG-ACTTTCTCACTTGT----ATCGGAAGC------A-TTA-CT---T--TT-GA-TA-TTTTT-CATTGCATTCAAT-GATCACGTGGAT-ACTGTTTGTAAAT-A-T-TGCCA------AT-T--------GTGCA---GTAAGTTGA-----AATACGCGTGCACGAAATTCGTA-ATTATGGGAAGTGATCGATTTCAGGT--GACACTCAAAA--ACA--GGTTAC-G-GCACC--ATA
gi|144737 : CCGGAACCTCGATAATTTCTGACA--TGCACAAG--CA-A-AAT--AT-TT-TGTAAC-T-T-T-C-G---ACCTTGACCTGT-ATTGCATCAG--TTTTCAGCAGACG-T-GTATGAAATCGAT----ATT-CGTAAAC-AAACCTAGCATTTGTGGAG--GTTTTATGT-A-AA---CTGAAAAA-TGGACCTAG--------TGA-GAAA------TACA-TTTTTT--CAGGTCTGTACCATAAAATG-ACTTTCTCACTTCT----ATCGGAAGC------A-TTA-TT---T--TT-GA-TA-TTTTT-CTTTGCATTCAAT-GACCATGTGGAT-ACTGTTTGTAAAT-A-T-TGCCA------AT-A--------GTGTA---TGAAGTTGA-----AATACGCTTGCGCGATATTCGTA-ATTATGGGAAGTGATCGATTTCAGGT--GACGCTCGAAA--ACA--GGTTAC-G-GCACC--ATAC
gi|144738 : CCGGAACCTCTGTAATTTCTGACA--TGCGCAAG--CG-A-AAT--AT-TT-TATAAC-T-T-T-T-G---ACCTTGACCTGT-ATTGCATCAG--TTTTCAGCAGACG-T-GTTTGAAACTGAT----ATT-TTTAAAT-AAACCTAGCATTTGTCGAG--GTTTTATGT-T-AA---CTGAAAAA-T--------------------GAAA------TACA-TTTTTT--CAGGTCTGTACCATAAAAAG-ACTTTCTCACTTGT----ATCGGAAGC------A-TTATTT---T--TT-TA-TA-TTTTT-CTTTGTATTCAAA-GACCCCGTGGAT-ACTGTTTGTGAAT-A-T-TGCCA------AT-T-----------------------------------------GCGATATTCGTA-ATTATGGGAATTGGTCGATTTCAGGT--TACGCTCGAAA--ACA--GGTTAC-G-ACACC--ATAC
gi|144739 : CCGGAATTCATATAATTTCTGAAA--TGCGC-----------AT------------AC-T-T-T-T-G---ACCTTGACCTGT-ATTGCATCAG--TTTTCCACAGACG-T-GATTGGAATCGAT----ATC-CGTAAAC-AAACCTAGCGTTTATCACA--GCTTTATGT-A-AA---CTGAAAAT-TGGACATAG--------TGA-GAAA-------AAA-AATGTT--CAGGTCTGTATCATAAAATG-ACTTTCTTACTTAT----ATCGGAAGC------A-TTA-TT---T--TTCTA-TA-TTTAA-CACTCCATTCAAT-GATCACGTGGAT-ACTATTTGT-AAT-A-T-TGCCA------AT-T--------GTGCT---GGAAGTCGA-----AATACGCTTGCGCGATATTCATA-ATTCTCGGAAGTGATCGAATTCTGGT--CGTGATCG-AA--ACA--GGTTAC-A-GCACC--ATAC
gi|144740 : CTGAAACCTCTATAATTTCTGACA--TGCACAAC--CA-A-AAT--AT-TT-TATAAC-T-T-T-T-G---ACCTTGACCTGT-ATTGCATTAC--TTTTCAGCAGTCG-T-GTTTGAAATCGAT----ATT--GTGAAC-
gi|144740 : TGT-G-AA---CTGAAAAA-TGGATATAG--------TGA--AAA------TACA-TTTTTT--CAGGTCTCTATCCTAAAATG-ACTTTCTTACGTGT----ATCGGAAGC------A-TTA-TT---T--TT-TA-TA-TTTTT-CATAGCATTCATT-GACCAAGTGGAT-A-TGTTTGTAAAT-A-T-CACCA------AC-T--------GTGCA---CAAAGTTGA-----AATACGCGTGCATGATATTCGTA-ATTCTGGGATGTAATCGATTTCAGGT--GATGCTTGAAA--ACA--GGTTGC-G-GCACC--tgaaaaatggatatagtgaaaatacattttttcaggtctctatcctaaaatgactttcttacgtgtatcggaagcattattttttatatttttcatagcattcattgaccaagtggatatgtttgtaaatatcaccaactgtgcacaaagttgaaatacgcgtgcatgatattcgtaattctgggatgtaatcgatttcaggtgatgcttgaaaacaggttgcggcacca
gi|144741 : ctgaaacctctataatttctgacatgcacaaccaaaatattttataacttttgaccttgacctgtattgcattacttttcagcagtcgtgtttgaaatcgatatCCGGAACTTCTATAATTTCTCATA--TGCTCAGT--CG-----TTCAT-GTGTATAAC-T-T-T-T-T---ACATTGACCGAT-TATGAATCAG--TTTTCAGCAGAAG-TGGTTTG-GATTGAC----ACT-TTTAAAC-AAACCTAGCTATTATCAAC--CTTTTAAGT-A-AA---CTGAAAAA-TAGACACAG--------TGA-GAAA------TACA--TTTTT--CTGGTCAGTATAATAAAAAT-ACTTTCTTACTTTT----ATCAGAAGC------A-TT--TG---T--TA-GA-TA-ACATT-CAATGCATTCAAT-GACCACGTGGGT-ACTATTTGTAAAT-A-T-TGACA------TT-T--------ATACA---GGAAGTTAA-----AATACATGTGCGCGATAATCGTATTTTCTCGAAAGTGATCGAATTCAGGT--TGTGAACGTAA--ATA--GGATAC-G-GCATA--ATA
gi|144742 : CCGGAACCTCAA-AAGATCTGACA--TGCGCAGT--CG-C-C-T--ATGTT-TATAAC-T-TAT-T-G---ACCTTGACCTATTATGGCATCAG--TTTTCAGCAGACG-T-G---------GAT------C-CGTAAAC-AAACCTAGCTTTTGTCATG--GTTTTATGT-A-AA---CTCAAATA-TGGACATAG--------TGA-GAAA------TACA-ATTTTT--CAG--------CA---------CTTTCTTACTTGG----ACAGGAAAC------A-TTA-TT---T--TT-GA-TA-GTTTT-TACTGCTTTCAAT-GACCACGTGGAT-AACATTTGT---T-A-T-AACCT-------T-T--------GTGCA---TGAAGCTGA-----AATACGTTTGTGCGATATTCGTA-GTTCTCCGAAGAGATCGAATTCAGAC--TGTGAACGAAA--ACA--GGTTAG-G-GCACCCTATAC
gi|144743 : CTGGAACATCTATACTTTCTGACA--TGCGCAGT--CG-A-CAT--GT-TA--ATAGC-T-T-CAT-G---ACCTTAACTAGT-TATGCATCAG--TTTTCAGCAGAAG-T--CATGGAATTGAT----ATT-CGTTAAC-AAACCTTGCTTTTGTCATG--GTTTTAGGT-T-AA---C-----AA-TAGACATAG--------TGA-GAAA------TATA-TTTTT---CAGATCTGTAACA---AATG-ACTTTCTTACTTAT----ACCGGAGAC------A-TTA-TA---T--TC-TA-TA-TTCAT-CATTGCATTCAAT-GCCCATATGGAT-ACTGTTTG-AAATCA-T-TGATAT-----TT-T--------GTGCA---GGAAGTTG-------ATACCCTTGCGCAATATTCATA-ATTCTCGGAAGTGATCGAATTCAGGT--C
gi|144744 : CCGGAACCACTATTATTTCTGACA--TGTGCAGT--C----AGTC-ATGTT-TATAAC-TGT-T-T-T---ACCTTGAAATGT-TATGCATCTG--TTTTCAGCAGACA-T-GATTAGAATTGAT----ATT-CGTAAACAAAACCTAGCTGTTGTCAAG--GTTTTATGTCA-AAGTTCTGCAAAA-TGGAAAAAG--------TGA-GAAA------TACA-TTTTTA--CAGGTCT-CATCAT---ATG-ACTGT-TTATTTTC----ATCA-----------A-TGA-TT---TCATT-TA-TA-TTTTT-tcga
gi|144745 : CCGGAACCTCGATAATTTCTGACA--TGCACAAG--CG-A-AAT--AT-TT-TATAAC-T-T-T-C-G---ACCt
gi|144745 : CGCGATATTCGTT-ATTATGGGAAGTGATCGATTTCAGGT--GACGCTCGAAA--ACA--Ggcgatattcgttattatgggaagtgatcgatttcaggtgacgctcgaaaacagcaatcgtaaaacatcgggtattt
gi|144746 : ccggaacctcgataatttctgacatgcacaagcgaaatattttataactttcgacGGAACCTCTATAATTTCTTACA--TGCACAAG--TG-A-AAT--AT-TT-TATAAC-T-T-T-T-T---ACCTTGACCTGT-ATTGCATCAC--TTTTCAGCAAACG-T-GTTTGAAATCAAT----ATC-CGTAAAC-AAACCTAGCATTTATCAAG--GTTTTATGT-A-AA---CTGAAAAA-TGGACATAG--------TGA-GAAA------TACA-TTTGTT--CAGGTTTGTATCATAAAATG-ACTTTCTTACGTGT----ATCGGAAGCATTATGA-TTA-TT---T--TT-------TTTTT-CATTGCATTCAAT-GATAACGTGGAT-ACTTTTTGTAAAT-A-T-TACCA------AT-T--------GTGTA---GGAAGTTGA-----AATACTTGTGCACGATATACGTA-ATTCTGGGATGTGGTCGATTTCAGGT--GATGCTCGAAA--ACG--GGTTAC-G-GCACC--ATACcaatcgtaaaacatcgggtattt
gi|144747 : GGAACCTCTATAATTTCTTACA--TGCACAAG--TG-A-AAT--AT-TT-TATAAC-T-T-T-T-T---ACCTTGACCTGT-ATTGCATCAC--TTTTCAGCAAACG-T-GTTTGAAATCAAT----ATC-CGTAAAC-AAACCTAGCATTTATCAAG--GTTTTATGT-A-AA---CTGAAAAA-TGGACATAG--------TGA-GAAA------TACA-TTTGTT--CAGGTTTGTATCATAAAATG-ACTTTCTTACGTGT----ATCGGAAGCATTATGA-TTA-TT---T--TT-------TTTTT-CATTGCATTCAAT-GATAACGTGGAT-ACTTTTTGTAAAT-A-T-TACCA------AT-T--------GTGTA---GGAAGTTGA-----AATACTTGTGCACGATATACGTA-ATTCTGGGATGTGGTCGATTTCAGGT--GATGCTCGAAA--ACG--GGTTAC-G-GCACC--ATAC
gi|144748 : GGAACTTTTATAAGTTCTGACAATTGCACAAT--CA-A-G-------TT-TATGAC-T-T-T-T-TTTTATCTTCACTTGT---TATGTTAGAGTTTTCAG-----------TTGGAATTGATGAAAATT-TGTAAAC-AAACCTAGCTTGTTTTATG--GTTTTATGT-A-AA---CTGAAAAA-TGGACATAG--------TGA-GAAA------TACA--TTTTT--CAGGT
gi|144749 : TATAATTTCTGACA--TACGCAGT--CGTT-CGT--A--TG-TATAACAT-T-T-T-G---ACCTTGACTGGT-TATAAATCAA--TTTTCAGCAGACG-T-AGTTGATAT
gi|144750 : TGACA--TGC--AATTTCG-ATCAT--GT-TT--ATTAC-T-T-T-TTG---ATCTTGACCTGT-TTTGCATCAG--TTTTCAGCA--------TTGGAAAT-GAA----ATT-CATAAAA-AAAC-TAGCTTTTGTTATG--GTTTTATGT-T-TA---TTGACAAA--AGACATAG--------TGA-GAAA------TACT-TTTTCC--CCAGTCTGTATAATAAAATG-ACTGTCTTTCTTGT----ATTGGTAGA------A-TTA-TT---T--TT-TA-TA-TTTTT-CATTGCATTTGAT-GACCACATGGAT-ACTGTTTGAGAA------------------------------TGCA---GGATGTTGC-----AATATATGTGCAT--TATTTGTA-AATCTCTGAAGTAAGTGAAATCAGGT--TGTGATCGAAA--ACA--TGTTAT-G-ACACC--ATAC
gi|144751 : TCAG--TTTTCAGCAAACG-C-GTTTGAACTAGAT----ATT-CATAAAC-AAACTTAGGGTTTGTCGAG--GTTTTATGT-A-AT---CTGAAAAA-TGGCCATAA--------TGA-GAAA------CACA-TTTTTT--CAGGTCTGTATCATAAAAGG-A-------A-TTGT----ATCAGAACCTTT---ACTTA-TT---T--TT-G-----TTTTT-CATTGCATTTAAT-GACCACGAGGAT-ACTATT------T-A-T-TCATA------AT-T--------CTG-----GGAAGT--A-----TACACACGT
gi|144752 : TCAGCAGGCGAC-GTT-GGAATTAAT----GTTTCTTAAAC-AAGAATA--ATTTTTTAAACTGTTTTTTGA-C-AA---CCGAAAAA-TGGGAATA---------TGC-GAAA------TACG-TTTTTTTTCATGCTTGTATAATAAAATG-ACGATGTTACCTGT----ATGGGAAGC------A-TTG-TT---T--GT-GAGTA-TTTTT---TCAAGATCATT-AACACCGTGGCT-TCTTGTTGTAAAT-ATT-TACC--------TCT--------CTGCA---GGAAGTTCA-----AATACGCGTGCGCGATATTAGTA-ATTCTGGAAAATGATCGATTTCAGGT--GAAGCTC-AAA--ACA--GGTAAC-G-GCACC--ACA
gi|144753 : TTGGAATTAAT----GTTTCTTAAAG-AAAAATAAGTTTT---AAACTGTTTT-TTT-ACAA---CCGGAAAC-TGGGAATAA--------TGATAAAA------TACG-TTTTTT--CATGCTTGTATAACAAAATG-ACAATGTTACCTGT----ATGGGAAAC------A-TTG-TT---T--GT-GAGTA-TTTTTACA---CGATCAAT-AACACCGTGGCT-TGTGGTTGTAAAT-A-T-TTACA------TT-T--------CTGTA---GGAAGTTCA-----AATACGCGTGCGCGATATTCTTA-ATTCTGGGAAGTGATCGATTTCAGGTGACGT--TCGAAA--AC
gi|144754 : AAATTGAT----ATA-CTTAAAC-AAACCTTGCTTGAGCCAAG--TATTTATAC-A-AA---CTGAAAAA-TGGACATAG--------TGA-GAAA------CACA-TTTCTT--CA---------------ATG-ACTTTCTTGCTTGT----ATGAGAAGC------A------T---T--TT-G-----------CATTTCATTCAAT-AACCATATGCAT-ACTAGTTGTAAAT-A-A-TGCCT------AC-T--------GTGCA---AGAAGATGAATACTAGTATGCGTGCGCGATATTCATA-ATTCTCTTTAGCGTTCCAATTCAGAT--CGTGATCGAAA--ACA---TTTAC-G-GCACC--ATA
gi|144755 : AAAA-TGGACATAG--------TGA-GAAA------TACA-TTTTTT--CAGCTCTGTATCATAAAATG-ACTTTCTTACTTGT----ATCAAAAGC------A-TTA-TT---T--TT-GA-TA-TTTTT-CATTGCATTCAAT-GACCATGTGGAT-ACTTTTTGTAAAT-A-T-TGCCAATTTATAT-T--------ATGCA---GGAAGTTGA-----AATACGTGTGTGCAATATGCGTA-ATTCTGGGAAGTAAT
gi|144756 : atttctcaatgggtttattcctggatccatAAAAA-TG-ACATAACATCAATTTAA-AAAAAGAGTTTACA-TTTTTT--TGGGTCTGTATC-TGAA-TA-ACTTTCCT----GT----ACCTGAAGC------A-TTA-TT---T--TA-TA-TA-TTTTT-CATTGCATTCACT-GACCATGTATAT-ACTGTTTGTAAAT-A-T-TGACC------TT-T--------GTGGT---GGAAGTTG------ATTACGCACGTATGACATTCATA-ATTTTTGGAAGTGATCGA
gi|144757 : atttatttttttttaaTTTTATGT-A-AA---TCGAAAAAATCAACATAG--------TGA-GAAA------CACA-TTTTTT--CAGGTCTGTATCATAAAATG-ACTTTCTTACTCGT----ATAGGAAGT------A-CTA-TT---T--TT-GA-TA-CTTTT-CATTGCATTCAAT-GA-CACGTAAAA-ACTATTTGTAAAT-A-T-TACTA------AT-T--------GTGCA---GAAAGTTGA-----AATACGC-------ATA-TCATA-ATTCTTGGAAGTGATCGAATTCCGGT--TGTGATTGAAA--ACA--GGTTAC-A-GTACC--ATACtaacaggttacgc
gi|144758 : TCATGAAATG-ACTTTCTTACTTGT----ATCGAAAGC------A-TTA-TT---T---------A-TTTTT-CATTGCATTCAAT-GACCACGTAGAT-ACTGTTTGTAAAC-A-
gi|144759 : ATGCACTATCTTCCCTGT----ATCGAAAGC------A-TTA-TTGATT--TT-GA-TA-ATTCT-TATCGCATTCAAC-GAACAAGTGGCA-ACTGTTTGTAAAT-A-A-TGACA---------T--------GTGCACAGGGAA---GA-----AA--------------------A-ATTCTTGGAAGTGATCAAATTCACCT--GGTGATTGAAA--ACACGGACTGCTGTGCACC--ATA
gi|144760 : ATGCACTATCTTCCCTGT----ATCGAAAGC------A-TTA-TTGATT--TT-GA-TA-ATTCT-TATCGCATTCAAC-GAACAAGTGGCA-ACTGTTTGTAAAT-A-A-TGACA---------T--------GTGCACAGGGAA---GA-----AA--------------------A-ATTCTTGGAAGTGATCAAATTCACCT--GGTGATTGAAA--ACACGGACTGCTGTGCACC--ATA
gi|144761 : ATGCACTATCTTCCCTGT----ATCGAAAGC------A-TTA-TTGATT--TT-GA-TA-ATTCT-TATCGCATTCAAC-GAACAAGTGGCA-ACTGTTTGTAAAT-A-A-TGACA---------T--------GTGCACAGGGAA---GA-----AA--------------------A-ATTCTTGGAAGTGATCAAATTCACCT--GGTGATTGAAAACACA--GACTGCTGTGCACC--ATA
gi|144762 : TTACTTGTTTTCATTCGAAGC------A-TTA-TT---T--TT-TA-CA-TTTTT-AATTGCAGTCAAT-GACCACGTGGAT-ACTGTTTGTATAT-A-T-TGACA------TT-T--------GTAAA---GGAATTTGA-----A
gi|144763 : AAAC------A-TTA-TT---T--TT-TA-TA-TTCCT-CATTGCATTCAAT-GACCACGC-GATAACTATTTGTAAAT-A-T-TGCCA------AT-T--------GTGCA---GGAAGTTGT-----AATGCGCGTGTGCGATATTCATA-ATTTTCGGAAGTGATTGAATTCAGGT--CGGGATCAAAA--TCA--GGTCAC-G-GCACC--ATA
gi|144764 : TA-TT---T--TT-CA-TAATTTTT-TACTGCTTTAAAT-GACCACATGGAT-ACTATTTGTAAAT-A-T-TTCCA------AT-T--------GTGCA---GGAAGTTGA-----TTTATGCGTGTGCGATATTCATA-ATTCTCTGAAATAATAGAATTCAGGT--CGTGATCGAAA--ACA--GGTTAC-A-GCACC--
gi|144765 : -TTTTT-CGTTACATTCAAT-GATCACGTGGAT-AATGTTTGTAAAT-A-T-TGACA------TT-T--------
gi|144766 : CAATCAACCACGTGGAT-ACTATTTGTAAAT-A-T-TGCCA------AT-T--------GTTCA---GGAAATTG------AATAC
gi|144767 : CAATCAACCACGTGGAT-ACTATTTGTAAAT-A-T-TGCCA------AT-T--------GTTCA---GGAAATTG------AATAC
gi|144768 : CAATCAACCACGTGGAT-ACTTTTTGTAAAT-A-T-TGCCA------AT-T--------GTGCA---GGAAAATG------AATAC-CATACCCGATGT
gi|144769 : CAATCAACCACGTGGAT-ACTATTTGTAAAT-A-T-TGACA------AT-T--------ATGCA---GGAAATTG------AATAC-CATTCCCGATGT
gi|144770 : CAATCAACCACGTGGAT-ACTATTTGTAAAT-A-T-TGCCA------AT-T--------GTGCA---GGAAATTG------AATAC
gi|144771 : ACCACGTGGAT-ACTATTTGTAAAT-A-T-TGCCA------AT-T--------GTGCA---GGAAATTG------AATAC-CATACCCAATGT
gi|144772 : CATGTGGAT-ACTTTTTTTAAAT-A-T-TGATA------TT-T--------GTGCA---GGAAGATGA-----AATATGCATGCGTGAT----------TCTCGGAAGTGATCAAATTCAGGT--TGTGATTGAAA--ACA--CATTAA-A-GCACC--
gi|144773 : CATGTGGAT-ACTTTTTGTAAAT-A-T-TGCCA------AT-T--------GTGCA---GGAAATTG------AATAC-CATACCCAATGT
gi|144774 : GTAAAT-A-G-TGATA------TT-C--------AT-CA---GGAAGTTGA-----AATATGCATGCATGA---------A--CTCGGAATTGATCAAATTCAGGT--TGTAATCAAAA--ACC--GTTTAA-G-TCACC--
gi|144775 : GTAAAT-A-TATCTCA------AT-TTTACCTTTGTGCA---GTAAGGTTA-----AGTACGTGTGCGCAATGTCCGTA-ATTTTCGGAAGTGATTGAATTCAGGT--TGTAATATATA--ACA--GGTTAT-A-ACGCA--ATA
gi|144776 : AT-A-T-TGCCA------AT-TTTT-----GTGCA---GAAAGCTGA-----AATATGCGTGCGCTATATTTGTA-ATTCTGGGAAGTGATCGATTTCAGGT--GATGCTCAAAA--ACA--GGTAAC-G-GCACC--ATAC
gi|144777 : TTGA-----AATAAGCTTGCACAATATTCGTA-ATTCTGGAGAGCGACCGATTTCAGGT--GGTGGTTGAAA--ACG--GGTTAC-G-GCACC--AT
gi|144778 : CGCGATATTCGTT-ATTATGGGAAGTGATCGATTTCAGGT--GACGCTCGAAA--ACA--G
gi|144779 : CGATATTAATA-ATTCTCGGAAGTGATCGAATTCAGGT--CATGATCGAAA--ATA--AGTTAC-G-GCACC--ATAC
gi|144780 : CGATATTCATA-ATTCTCGGAAGTGATCGAATTCAGGT--CATGATCGAAA--ATA--CGTTAC-G-GTACC--ATAC
gi|144781 : CGATATTCATA-ATTCTCGGAAGTGATCGAATTCAGGT--CATGATCGAAA--ATA--CGTTAC-G-GCGTC--ATAC
gi|144782 : CGATATTCATA-ATTCTCGGAAGTGATCGAATTCAGGT--CATGACCGAAA--ATA--CGTTTA-G-GCACC--ATAC
gi|144783 : GATATTCATA-ATTCTCGGAAGTGATCGAATTCGGGT--CATGATCGAAA--ATA--CGTTAC-G-GCACC--ATAC
gi|144784 : TA-ATTCTGGGAAGTGATCGATTTCATGT--GACGCTCGAAA--ACG--GGTTAC-G-GCACC--ATA