lowQualScore : 1 1 1 1 11
lowQualScore : 3 444 55555 5 0 0 2 0 4 1 33 5 3 5 0 2 4 111 55 555555 0 0 6 0
lowQualScore : . ... ..... . . . . . . . .. . . . . . . ... .. ...... . . . .
lowQualScore : 2 777 99999 2 8 8 3 9 1 6 33 8 1 2 4 6 5 444 22 888888 7 7 5 8
consensus : GAAGCGA--GAT-----GTGTCATGGGC-T-ACATAAGTGGTGTTT-GATTAGCGTCAA-GAAGCG--TTTCGTTACAGGTAACATCACTA-TTT---AGCGAC-AAGAAGAGTCAAGAAGCG------A-GA-TGTGTCATGGGC-TACATAA
Reference ( gi|53824 ) : GAAGCAA--AAT-----GTGTCATGTGC-T-ACATAAGTGGTGTTT-GATTAACGTCAA-GAAGCG--TTTAGTTACAGGTTACTTCACTA-TAT---AGCGAA-AAGAAGAGTCAAGAAGCG------A-GA-TGTGTCATGTGC-TACATAA
gi|53829 : GAAGCGA--AAT-----GTGCCATGTTC-TTACATAAGTGGTGTTT-GATTAGCCTCAA-GAAGCG--TTTCATTACAGGTAACTTCACTA-TTT---TGCGAC-AAGAAGAGTCAGGATGCG------A-GA-TATGTCATGTGC-TACATAA
gi|53834 : GAAGCAA--GAT-----GTGTCATGTGC-T-ACATAAGTGGTGTAT-GATTAACGTCAA-GAAACG--TTTCGTTACACGTAACTTCACTA-TTT---AGCGAC-ATGAAAAGTCAAGCAGTC------A-GA-TGTGTTATATGC-TACATA
gi|53830 : GAAACGA--A-T-----GTGTCATGTGC-T-ACATAAGTAGTGTTT-GATTAGCGTCAA-GATGCG--TTTCGTTACAGGTAACTTATCTA-TTT---AGCGAC-CAGAAGAGCCAAGAAGCG------A-GA-TGTGTAATGGAC-TACATAA
gi|53828 : GATGCGA--GAT-----ATGTCATGTGC-T-ACATAAGTGGTATTT-GATTTGCATCAA-GATGCG--TTTCGTTACAGGTACCTTCAATA-TTT---TGCGAC-AAGAAGAGTCAGGAAGCA------A-GA-TGTGTCATGTGC-TACATAA
gi|53823 : GAAGCGA--GAT-----GAGTCACGGGC-T-ACAAAAGTGGTGTTT-GATAAGCGTCAA-GAAGCG--TTCCGTTACAGATAGCATCACTA-TTT---AGCGAC-ATGAAGAGTCAAGAAGCA------A-AA-TGTGTCATGTGC-TACATAA
gi|53825 : GAAGCGA--GAT-----GTGTCATCGGC-T-ACAAAAGTGGTGTTT-GATAAGCGTCAA-GAAGCG--TTCCGTTACAGATAACATCACTA-TTT---AGCGAC-AAGAAAAGGCAAGAAACG------A--A-TGTGTCATGTGC-TACATAA
gi|53815 : GAAGCGA--GAT-----AAGTAATGGAC-T-ACATCAATGGTCTTT-GATTAGCGTCAA-GAAGCG--TTTCATTACAGGTTACATCACTA-TCT---AGCGAC-AAGGAGAGTCAAGAAACA------A-GA-TGTGTCATGGAC-TACATAA
gi|53807 : GAAGCGA--GAT-----AAGTAATGGAC-T-ACATCAATGGTCTTT-GATTAGCGTCAA-GAAGCG--TTTCATTACAGGTTACATCACTA-TCT---AGCGAC-AAGGAGAGTCAAGAAACA------A-GA-TGTGTCATGGAC-TACATAAt
gi|53799 : GAAGCGA--GAT-----AAGTAATGGAC-T-ACATCAATGGTCTTT-GATTAGCGTCAA-GAAGCG--TTTCATTACAGGTTACATCACTA-TCT---AGCGAC-AAGGAGAGTCAAGAAACA------A-GA-TGTGTCATGGAC-TACATAAt
gi|53826 : GAAGCGA--GAT-----GTGTCATGTGC-T-ACATAAATGATGTTT-GATTTGCGCCAA-GAAGCA--TTTCGTTACAAGTAACGTTACTA-TTT---AGCGAC-AAGATCAATCACGAAGCA------A-GA-TGTGTCATGGGC-TACATAAt
gi|53833 : GAAGCGA--AAA-----GTGTAATGTGC-T-ACATAAATCGTGTTT-GAATTGCGTCAA-GAATCG--TTTTGTTACAGGTAACATTACTT-TTT---TGCGAC-AAGAAGAGTCAAGAAGGG------A-GA-TGTATCATGTGT-TACATAA
gi|53832 : GAAGCAA--GAT-----GTGTCATGGGC-T-ACATAAATGGTATTT-GATAAGCGCCAA-GAATCG--TTCCGTTACAGATAACATCAGTA-TTT---AGCGAT-AAGAA-AGGCACGAAGCG------A-GA-TGTGTCATCGGC-TACAAAA
gi|53803 : GAAACGA--AAT-----GTGTCATGTGC-T-AGATAAGTGGTGTTT-GGTTAGCGCCAT-GAAGCA--TTTCGTTACTGGTAACATCATT----T---AG-GAACAATAAGAGTCAAAAAGCG------G-GA--GTGTCATGTGG-TACATAA
gi|53843 : GAAACGA--AAT-----GTGTCATGTGC-T-AGATAA
gi|53831 : gaggtgtgtcatggactacatcatggtgattgataagcgtcaagaagcattttgttatagataacattactttttagcgacaagaagagtcaaGAAGCGA--GAT-----GTGTAATGGAC-T-ACATAAATGGTGTTA-CATTAGCGCCAA-GAATTG--TTCCGTTAAAGATAACATAACTA-TTT---AGCGAC-AAAAAGAGTCAAGAAGCG------A-AA-AGTGTAATGTGC-TACATAA
gi|53819 : GAAACGA--AAT-----GTGTCATGTGC-T-AGATAAGTGGTGTTT-GGTTAGCGCCAT-GAAGCA--TTTCGTTACTGGTAACATCATT----T---AG-GAACAATTAGAGTCAAAAAGCG------G-GA--GTGTCATGTGG-TACATAA
gi|53811 : GAAACGA--AAT-----GTGTCATGTGC-T-AGATAAGTGGTGTTT-GGTTAGCGCCAT-GAAGCA--TTTCGTTACTGGTAACATCATT----T---AG-GAACAATTAGAGTCAAAAAGCG------G-GA--GTGTCATGTGG-TACATAA
gi|53800 : GAAGCAAGTAAT-----GT--CATAGAC-T-ACATAAGTATTGTTT-GATAAGCGTCAA-GAATCG--TTTCATTACAAGTAACATAACTA-TTT---AAC----AAGAAGAGTCAGGAAGCG------A-GA-TGTGTCATGGAC-TACATAA
gi|53817 : GAAGCGA--GAT-----GTCT--TGGAC-T--TAAAAATTGTGTTT-GATTAGCGTCAA-GAAGTG--TTTCGTTACAGGTAACATCACTA-TTT---AGCGAA-AAAAAGAGTGAAGAAGCGAGAATCA-GA-CGTGTTATGTGC-TATATAAt
gi|53809 : GAAGCGA--GAT-----GTCT--TGGAC-T--TAAAAATTGTGTTT-GATTAGCGTCAA-GAAGTG--TTTCGTTACAGGTAACATCACTA-TTT---AGCGAA-AAAAAGAGTGAAGAAGCGAGAATCA-GA-CGTGTTATGTGC-TATATAA
gi|53827 : GAAGCGA--GAT-----GTGTCTTGGAC-T-ACATAAATAGTGATT-GATTAGCGTCAA-GATGCG--TTTCGTTACAGGTAACATTTCTA-TTT---AGCGAC-AAGAAGAGTCACGAAGCG------A-GA-TGAAACTTGGAC-TATATAA
gi|53816 : GAAGCAA--GTT-----ATGTCATAGAC-T-ACATAAGTATTGTTT-GACAAGCGTCAA-GAATCG--TTTCATTACAGGTAACATAACTA-TTT---AAC----AAGAAGAGTCAGGAAGCG------A-GA-TGTACCATGGAC-TACATAAt
gi|53808 : GAAGCAA--GTT-----ATGTCATAGAC-T-ACATAAGTATTGTTT-GACAAGCGTCAA-GAATCG--TTTCATTACAGGTAACATAACTA-TTT---AAC----AAGAAGAGTCAGGAAGCG------A-GA-TGTACCATGGAC-TACATAAt
gi|53846 : GAAACGA--AAT-----GTGTCATGTGC-T-AGATAAt
gi|53845 : gtcatggactacatcatggtgattgataagcgtcaagaagcatttcgttatagataacattactttttagcgacaagaagagtcaaGAAACGA--AAT-----GTGTCATGTGC-T-AGATAA
gi|53801 : gtcatggactacatcatggtgattgataagcgtcaagaagcatttcgttatagataacattactttttagcgacaagaagagtcaaGAAGCGA--GAT-----GTCT--TGGAC-T-A-A-AAATTGTGTTT-GATTAGCGTCAA-GAAGTG--TTTCGTTACAGGTAGCATCACTA-TTT---AGCGAC-AAAAAGAGTGAAGAAGCGAGAATCA-GA-CGTGTTATGTGC-TATATAA
gi|53847 : GAAGCGA--AAT-----GTGCCATGTTCTT-ACATAA
gi|53818 : tgattagcgtcaagaagcgttgcgttacagataacatcactatttagcaacaagaaaagttaaGAAGCGA--GAT-----GTACCATGGAC-T-ACATAA-TGGTGTTT-TATTAACACCAA-TAAGGG--TTTCGTCACAGCTTATATAACTA-ATT---AGCGAC-AAGAAAAATAAAGAAGCG------A-GA-TGT
gi|53810 : GAAGCGA--GAT-----GTACCATGGAC-T-ACATAA-TGGTGTTT-TATTAACACCAA-TAAGGG--TTTCGTCACAGCTTATATAACTA-ATT---AGCGAC-AAGAAAAATAAAGAAGCG------A-GA-TGTcttggact
gi|53802 : GAAGCGA--GAT-----GTGTCATGGAC-T-ACATAA-TGGTGTTT-TATTAACACCAA-GACGGG--TTTCGTCACAACTAATATTACTA-ATT---AGCGAC-AAGAAAAATAAAGAAGCG------A-GA-TGTcttggact
gi|53805 : GAAGCGAG-AATCAGACGTGTTATGTGC-T-ATATAAGTGGGGTGT-AATTAGCGTCAA-GAAG-GATTTTTTTTACATGAAACATTACTAGTA----AGCGCC-AAGATGAGTCAAGAG--G------A-GG-TGTGTCATGGAC-TACATcttggacta
gi|53820 : GAAACAA--GAT-----GTGTCATGGAC-T-ACATAATGGGT-TTT-GAATAAT-TCAAAGAAGGG--CTTCATTACAACTTACATTACTA-TTA---AGCCAC-TAGAAGAATCAAATAGCG------A-TA-TGTGTCATcat
gi|53812 : GAAACAA--GAT-----GTGTCATGGAC-T-ACATAATGGGT-TTT-GAATAAT-TCAAAGAAGGG--CTTCATTACAACTTACATTACTA-TTA---AGCCAC-TAGAAGAATCAAATAGCG------A-TA-TGTGTCAT
gi|53804 : GAAACAA--GAT-----GTGTCATGGAC-T-ACATAATTG-CGTTT-GAATAGTGCAAA-GAAGGG--CTTCATTACAACTAACATTACTA-TTA---AGCCAC-TAGAAGAATCAAATAGCG------A-TA-TGTGTCAT
gi|53821 : GAAGCGAG-AATCAGACGTGTTATGTGC-T-ATATAAGTGGGGTGT-AATGAGCGTCAA-GAAG-GATTTTTTTTACATGAAACATTACTAGTA----AGCGCC-AAGATGAGTCAAGAGG-G------------GTGTCATGGAC-TACAT
gi|53813 : GAAGCGAG-AATCAGACGTGTTATGTGC-T-ATATAAGTGGGGTGT-AATGAGCGTCAA-GAAG-GATTTTTTTTACATGAAACATTACTAGTA----AGCGCC-AAGATGAGTCAAGAGG-G------------GTGTCATGGAC-TACATcat
gi|53837 : GAAGGGA--GAT-----GTATCATGTGT-T-ACATAAATAGTGTTT-GATTTGCGTCAA-GAAGCG--TTTcat
gi|53835 : GAGGCGA--GAT-----GTATCATGAGC-T-ACATAA
gi|53851 : gaagcgagatgaaacttggactatataattggtgttaaagataacatcattattcatcgacaagaagagtcaaGAAGCGA--AAT-----ATGTCATGTGC-T-AAATA
gi|53836 : acaggtatcatcactatttagcgacaggaagagtctaGAGGCGA--GAT-----GTATCATGAGC-T-ACATAAGTGGTTCTT-GATTAGTATCAA-GAAACG--TTGCGTTACA
gi|53822 : GAAGCGA--GAT-----GTGTCATGGAC-T-ACATAAGTGATGTTT-GATAAGTGACAA-GAAGCG--CTT
gi|53814 : GAAGCGA--GAT-----GTGTCATGGAC-T-ACATAAGTGATGTTT-GATAAGTGACAA-GAAGCG--CTTc
gi|53806 : GAAGCGA--GAT-----GTGTCATGGAC-T-ACATAAGTGATGTTT-GATAAGTGACAA-GAAGCG--CTTc
gi|53838 : AAGCGG--GA------GTGTCATGTGG-T-ACATAAGTGGTGTTT-GATTAGCGCCAA-GAAGCG--TTTCGTTACAGATAACATTTCTA-TTT---TTCGAT-AAGAAAAGTCGTGAAGCG------A-GA-TGTGTCATGGAC-TACATAAc
gi|53840 : AAGCGG--GA------GTGTCATGTGG-T-ACATAAGTGGTGTTT-GATTAGCGCCAA-GAAGCG--TTTCATTACAGATAACATTTCTA-TTT---TTTGAT-AAGAAAAGTCATGAAGCG------A-GA-TGTGTCATGGAC-TACATAA
gi|53839 : AAGCGG--GA------GTGTCATGTGG-T-ACATAAGTGGTGTTT-GATTAGCGCCAA-GAAGCG--TTTCATTACAGATAACATTTCTA-TTT---TTTGAT-AAGAAAAGTCATGAAGCG------A-GA-TGTGTCATGGAC-TACATAA
gi|53841 : AAGCAG--ATT-----GTGTTATAAAC-T-ACAGAAGTGGTGTTTTAATTAGCGTCAA-GAAACG--TTTCGTTAACGGTAACATTTCTA-TTT---CGCGAC-AAGAAGAGTCATGAAGCG------A-GA-TGTGTCTTGGAC-TACATAA
gi|53842 : GCGA--GAT-----GTGTCATGGGC-T-ACATAAGTGATGTTT-GATTAGCGTCAA-GAAGCG--TTTCGTTACAGATAATATCACTA-TTT---AGCGAC-AAGAAAAGGCACGAAGCG------A-GA-TGAGTCACGGGC-TACAAAA
gi|53850 : GCGA--GAT-----GTGTCATGGGC-T-ACATAA
gi|53844 : gtttcgttacagataacagtagatttaagcaacaagaagagtcactatA--GAT-----GTGTTATATGC-T-ACATATGTGGTGTTT-GATTTGCGTCAA-GAAGTG--TTTCGTTACGGGTAACATTTCTA-TTT---AGAAAC-AAGAAGTGTCATTAAGC-------A-GATTGTGTTATAAAC-TACAGAA
gi|53843 : T-----GTGTCATGGAC-T-ACATCA-TGGTGATT-GATAAGCGTCAA-GAAGCA--TTTTGTTATAGATAACATTACTT-TTT---AGCGAC-AAGAAGAGTCAAGAAACG------A-AA-TGTGTCATGTGC-TAGATAA
gi|53846 : gaggGTCATGGAC-T-ACATCA-TGGTGATT-GATAAGCGTCAA-GAAGCA--TTTCGTTATAGATAACATTACTT-TTT---AGCGAC-AAGAAGAGTCAAGAAACG------A-AA-TGTGTCATGTGC-TAGATAA
gi|53845 : GTCATGGAC-T-ACATCA-TGGTGATT-GATAAGCGTCAA-GAAGCA--TTTCGTTATAGATAACATTACTT-TTT---AGCGAC-AAGAAGAGTCAAGAAACG------A-AA-TGTGTCATGTGC-TAGATAA
gi|53847 : T-GATTAGCGTCAA-GAAGCG--TTGCGTTACAGATAACATCACTA-TTT---AGCAAC-AAGAAAAGTTAAGAAGCG------A-AA-TGTGCCATGTTCTTACATAA
gi|53848 : TTAGCGTCAA-GAAATC--TTT-----CAGGTAAAATCACTA-TTT---AGCGAC-AAGAAGAGTCAAGAA
gi|53849 : GTCAA-GAAATG--TTTCGCTACAGGTAATATCACTA-TTT---AGC-----------GTCAAGAAGCG------ACG---GTGTCATGGAC-TACATAa
gi|53850 : agaG--TTTCGTTACAGATAAC---AGTA-GATTTAAGCAAC-AAGAAGAGTCACTATGCG------A-GA-TGTGTCATGGGC-TACATAA
gi|53835 : GTTAAAGATAACATCATTA-TTC---ATCGAC-AAGAAGAGTCAAGAGGCG------A-GA-TGTATCATGAGC-TACATAA
gi|53851 : gaagcgagatgaaacttggactatataattggtACAGGTATCATCACTA-TTT---AGCGAC-AGGAAGAGTCTAGAAGCG------A-AA-TATGTCATGTGC-TAAATA
gi|53853 : T---AGCGAT-AAGAAGAGTCAAGAAGCA------A-GT-TATGTCATAGAC-TACATAA
gi|53852 : T---AGCGAT-AAAAAGAGTAAAGAAGCA------A-GT-AATGTCATAGAC-TACATAA
gi|53818 : GAAGCG------A-GA-TGTACCATGGAC-TACATAA
gi|53810 : GAAGCG------A-GA-TGTACCATGGAC-TACATAAtggtgttttattaacaccaataagggtttcgtcacagcttatataactaattagcgacaagaaaaataaagaagcgagatgtcttggact
gi|53802 : GAAGCG------A-GA-TGTGTCATGGAC-TACATAAtggtgttttattaacaccaataagggtttcgtcacagcttatataactaattagcgacaagaaaaataaagaagcgagatgtcttggact
gi|53820 : GAAACA------A-GA-TGTGTCATGGAC-TACATAAtggtgttttattaacaccaagacgggtttcgtcacaactaatattactaattagcgacaagaaaaataaagaagcgagatgtcttggacta
gi|53812 : GAAACA------A-GA-TGTGTCATGGAC-TACATAAtgggttttgaataattcaaagaagggcttcattacaacttacattactattaagccactagaagaatcaaatagcgatatgtgtcat
gi|53804 : GAAACA------A-GA-TGTGTCATGGAC-TACATAAtgggttttgaataattcaaagaagggcttcattacaacttacattactattaagccactagaagaatcaaatagcgatatgtgtcat
gi|53837 : GAAGGG------A-GA-TGTATCATGTGT-TACATAAttgcgtttgaatagtgcaaagaagggcttcattacaactaacattactattaagccactagaagaatcaaatagcgatatgtgtcat
gi|53836 : GAGGCG------A-GA-TGTATCATGAGC-TACATAAatagtgtttgatttgcgtcaagaagcgttt
gi|53822 : GAAGCG------A-GA-TGTGTCATGGAC-TACATAAgtggttcttgattagtatcaagaaacgttgcgttaca
gi|53814 : GAAGCG------A-GA-TGTGTCATGGAC-TACATAAgtgatgtttgataagtgacaagaagcgcttc
gi|53806 : GAAGCG------A-GA-TGTGTCATGGAC-TACATAAgtgatgtttgataagtgacaagaagcgcttc
Alignments
lowQualScore : 777777 0 0 2 0 1 33 0 0 777777 0 0 1 0
lowQualScore : ...... . . . . . .. . . ...... . . . .
lowQualScore : 555555 9 8 3 8 6 22 8 8 000000 8 8 0 9
consensus : GAAGCGAGA------T-GTGTCATGGGCT-ACATAAGTGGTGTTT-GATTAGCGTCAA-GAAGCG--TTTCGTTACAGGTAACATCA-CTATTT-AGCGACAAGAAGAGTCAAGAAGCG------A-GA-TGTGTCATGGGC-TACATAA
Reference ( family-432 ) : GAAGCGAGA------T-GTGTCATGGGCT-ACATAAGTGGTGTTT-GATTAGCGTCAA-GAAGCG--TTTCGTTACAGGTAACATCA-CTATTT-AGCGACAAGAAGAGTCAAGAAGCG------A-GA-TGTGTCATGGGC-TACATAA
gi|53799 : GAAGCGAGA------T-AAGTAATGGACT-ACATCAATGGTCTTT-GATTAGCGTCAA-GAAGCG--TTTCATTACAGGTTACATCA-CTATCT-AGCGACAAGGAGAGTCAAGAAACA------A-GA-TGTGTCATGGAC-TACATAA
gi|53800 : GAAGCAAGT------A-ATGTCATAGACT-ACATAAGTATTGTTT-GATAAGCGTCAA-GAATCG--TTTCATTACAAGTAACATAA-CTATTT-A---ACAAGAAGAGTCAGGAAGCG------A-GA-TGTGTCATGGAC-TACATAAt
gi|53801 : GAAGCGAGA------T-GTCT--TGGACT-A-A-AAATTGTGTTT-GATTAGCGTCAA-GAAGTG--TTTCGTTACAGGTAGCATCA-CTATTT-AGCGACAAAAAGAGTGAAGAAGCGAGAATCA-GA-CGTGTTATGTGC-TATATAAt
gi|53802 : GAAGCGAGA------T-GTGTCATGGACT-ACATAA-TGGTGTTT-TATTAACACCAA-GACGGG--TTTCGTCACAACTAATATTA-CTAATT-AGCGACAAGAAAAATAAAGAAGCG------A-GA-TGTCT--TGGAC-TA
gi|53803 : GAAACGAAA------T-GTGTCATGTGCT-AGATAAGTGGTGTTT-GGTTAGCGCCAT-GAAGCA--TTTCGTTACTGGTAACATC----ATTT-AGGAACAATAAGAGTCAAAAAGCG------G-GA--GTGTCATGTGG-TACATAA
gi|53804 : GAAACAAGA------T-GTGTCATGGACT-ACATAATTG-CGTTT-GAATAGTGCAAA-GAAGGG--CTTCATTACAACTAACATTA-CTATTA-AGCCACTAGAAGAATCAAATAGCG------A-TA-TGTGTCAT
gi|53805 : GAAGCGAGAATCAGAC-GTGTTATGTGCT-ATATAAGTGGGGTGT-AATTAGCGTCAA-GAAG-GATTTTTTTTACATGAAACATTA-CTAGTA-AGCGCCAAGATGAGTCAAGAG--G------A-GG-TGTGTCATGGAC-TACAT
gi|53806 : GAAGCGAGA------T-GTGTCATGGACT-ACATAAGTGATGTTT-GATAAGTGACAA-GAAGCG--CTTCcat
gi|53807 : GAAGCGAGA------T-AAGTAATGGACT-ACATCAATGGTCTTT-GATTAGCGTCAA-GAAGCG--TTTCATTACAGGTTACATCA-CTATCT-AGCGACAAGGAGAGTCAAGAAACA------A-GA-TGTGTCATGGAC-TACATAA
gi|53808 : GAAGCAAGT------T-ATGTCATAGACT-ACATAAGTATTGTTT-GACAAGCGTCAA-GAATCG--TTTCATTACAGGTAACATAA-CTATTT-A---ACAAGAAGAGTCAGGAAGCG------A-GA-TGTACCATGGAC-TACATAAt
gi|53809 : GAAGCGAGA------T-GTCT--TGGACT--TAAAAATTGTGTTT-GATTAGCGTCAA-GAAGTG--TTTCGTTACAGGTAACATCA-CTATTT-AGCGAAAAAAAGAGTGAAGAAGCGAGAATCA-GA-CGTGTTATGTGC-TATATAAt
gi|53810 : GAAGCGAGA------T-GTACCATGGACT-ACATAA-TGGTGTTT-TATTAACACCAA-TAAGGG--TTTCGTCACAGCTTATATAA-CTAATT-AGCGACAAGAAAAATAAAGAAGCG------A-GA-TGTCT--TGGAC-T
gi|53811 : GAAACGAAA------T-GTGTCATGTGCT-AGATAAGTGGTGTTT-GGTTAGCGCCAT-GAAGCA--TTTCGTTACTGGTAACATC----ATTT-AGGAACAATTAGAGTCAAAAAGCG------G-GA--GTGTCATGTGG-TACATAA
gi|53812 : GAAACAAGA------T-GTGTCATGGACT-ACATAATGGGT-TTT-GAATAAT-TCAAAGAAGGG--CTTCATTACAACTTACATTA-CTATTA-AGCCACTAGAAGAATCAAATAGCG------A-TA-TGTGTCAT
gi|53813 : GAAGCGAGAATCAGAC-GTGTTATGTGCT-ATATAAGTGGGGTGT-AATGAGCGTCAA-GAAG-GATTTTTTTTACATGAAACATTA-CTAGTA-AGCGCCAAGATGAGTCAAGAGG-G------------GTGTCATGGAC-TACAT
gi|53814 : GAAGCGAGA------T-GTGTCATGGACT-ACATAAGTGATGTTT-GATAAGTGACAA-GAAGCG--CTTCcat
gi|53815 : GAAGCGAGA------T-AAGTAATGGACT-ACATCAATGGTCTTT-GATTAGCGTCAA-GAAGCG--TTTCATTACAGGTTACATCA-CTATCT-AGCGACAAGGAGAGTCAAGAAACA------A-GA-TGTGTCATGGAC-TACATAA
gi|53816 : GAAGCAAGT------T-ATGTCATAGACT-ACATAAGTATTGTTT-GACAAGCGTCAA-GAATCG--TTTCATTACAGGTAACATAA-CTATTT-A---ACAAGAAGAGTCAGGAAGCG------A-GA-TGTACCATGGAC-TACATAAt
gi|53817 : GAAGCGAGA------T-GTCT--TGGACT--TAAAAATTGTGTTT-GATTAGCGTCAA-GAAGTG--TTTCGTTACAGGTAACATCA-CTATTT-AGCGAAAAAAAGAGTGAAGAAGCGAGAATCA-GA-CGTGTTATGTGC-TATATAAt
gi|53818 : GAAGCGAGA------T-GTACCATGGACT-ACATAA-TGGTGTTT-TATTAACACCAA-TAAGGG--TTTCGTCACAGCTTATATAA-CTAATT-AGCGACAAGAAAAATAAAGAAGCG------A-GA-TGTCT--TGGAC-T
gi|53819 : GAAACGAAA------T-GTGTCATGTGCT-AGATAAGTGGTGTTT-GGTTAGCGCCAT-GAAGCA--TTTCGTTACTGGTAACATC----ATTT-AGGAACAATTAGAGTCAAAAAGCG------G-GA--GTGTCATGTGG-TACATAA
gi|53820 : GAAACAAGA------T-GTGTCATGGACT-ACATAATGGGT-TTT-GAATAAT-TCAAAGAAGGG--CTTCATTACAACTTACATTA-CTATTA-AGCCACTAGAAGAATCAAATAGCG------A-TA-TGTGTCAT
gi|53821 : GAAGCGAGAATCAGAC-GTGTTATGTGCT-ATATAAGTGGGGTGT-AATGAGCGTCAA-GAAG-GATTTTTTTTACATGAAACATTA-CTAGTA-AGCGCCAAGATGAGTCAAGAGG-G------------GTGTCATGGAC-TACAT
gi|53822 : GAAGCGAGA------T-GTGTCATGGACT-ACATAAGTGATGTTT-GATAAGTGACAA-GAAGCG--CTTCcat
gi|53823 : GAAGCGAGA------T-GAGTCACGGGCT-ACAAAAGTGGTGTTT-GATAAGCGTCAA-GAAGCG--TTCCGTTACAGATAGCATCA-CTATTT-AGCGACATGAAGAGTCAAGAAGCA------A-AA-TGTGTCATGTGC-TACATAA
gi|53824 : GAAGCAAAA------T-GTGTCATGTGCT-ACATAAGTGGTGTTT-GATTAACGTCAA-GAAGCG--TTTAGTTACAGGTTACTTCA-CTATAT-AGCGAAAAGAAGAGTCAAGAAGCG------A-GA-TGTGTCATGTGC-TACATAA
gi|53825 : GAAGCGAGA------T-GTGTCATCGGCT-ACAAAAGTGGTGTTT-GATAAGCGTCAA-GAAGCG--TTCCGTTACAGATAACATCA-CTATTT-AGCGACAAGAAAAGGCAAGAAACG------A--A-TGTGTCATGTGC-TACATAA
gi|53826 : GAAGCGAGA------T-GTGTCATGTGCT-ACATAAATGATGTTT-GATTTGCGCCAA-GAAGCA--TTTCGTTACAAGTAACGTTA-CTATTT-AGCGACAAGATCAATCACGAAGCA------A-GA-TGTGTCATGGGC-TACATAA
gi|53827 : GAAGCGAGA------T-GTGTCTTGGACT-ACATAAATAGTGATT-GATTAGCGTCAA-GATGCG--TTTCGTTACAGGTAACATTT-CTATTT-AGCGACAAGAAGAGTCACGAAGCG------A-GA-TGAAACTTGGAC-TATATAA
gi|53828 : GATGCGAGA------T-ATGTCATGTGCT-ACATAAGTGGTATTT-GATTTGCATCAA-GATGCG--TTTCGTTACAGGTACCTTCA-ATATTT-TGCGACAAGAAGAGTCAGGAAGCA------A-GA-TGTGTCATGTGC-TACATAAt
gi|53829 : GAAGCGAAA------T-GTGCCATGTTCTTACATAAGTGGTGTTT-GATTAGCCTCAA-GAAGCG--TTTCATTACAGGTAACTTCA-CTATTT-TGCGACAAGAAGAGTCAGGATGCG------A-GA-TATGTCATGTGC-TACATAA
gi|53830 : GAAACGA-A------T-GTGTCATGTGCT-ACATAAGTAGTGTTT-GATTAGCGTCAA-GATGCG--TTTCGTTACAGGTAAC-TTATCTATTT-AGCGACCAGAAGAGCCAAGAAGCG------A-GA-TGTGTAATGGAC-TACATAA
gi|53831 : GAAGCGAGA------T-GTGTAATGGACT-ACATAAATGGTGTTA-CATTAGCGCCAA-GAATTG--TTCCGTTAAAGATAACATAA-CTATTT-AGCGACAAAAAGAGTCAAGAAGCG------A-AA-AGTGTAATGTGC-TACATAA
gi|53832 : GAAGCAAGA------T-GTGTCATGGGCT-ACATAAATGGTATTT-GATAAGCGCCAA-GAATCG--TTCCGTTACAGATAACATCA-GTATTT-AGCGATAAGAA-AGGCACGAAGCG------A-GA-TGTGTCATCGGC-TACAAAA
gi|53833 : GAAGCGAAA------A-GTGTAATGTGCT-ACATAAATCGTGTTT-GAATTGCGTCAA-GAATCG--TTTTGTTACAGGTAACATTA-CTTTTT-TGCGACAAGAAGAGTCAAGAAGGG------A-GA-TGTATCATGTGT-TACATAA
gi|53834 : GAAGCAAGA------T-GTGTCATGTGCT-ACATAAGTGGTGTAT-GATTAACGTCAA-GAAACG--TTTCGTTACACGTAACTTCA-CTATTT-AGCGACATGAAAAGTCAAGCAGTC------A-GA-TGTGTTATATGC-TACATA
gi|53835 : GAAGCGAGA------T-GAAACTTGGACT-ATATAATTGGTGT------------------------------TAAAGATAACATCA-TTATTC-ATCGACAAGAAGAGTCAAGAGGCG------A-GA-TGTATCATGAGC-TACATAA
gi|53836 : GAGGCGAGA------T-GTATCATGAGCT-ACATAAGTGGTTCTT-GATTAGTATCAA-GAAACG--TTGCGTTACA
gi|53837 : GAAGGGAGA------T-GTATCATGTGTT-ACATAAATAGTGTTT-GATTTGCGTCAA-GAAGCG--TTT
gi|53838 : AAGCGGGA--------GTGTCATGTGGT-ACATAAGTGGTGTTT-GATTAGCGCCAA-GAAGCG--TTTCGTTACAGATAACATTT-CTATTT-TTCGATAAGAAAAGTCGTGAAGCG------A-GA-TGTGTCATGGAC-TACATAA
gi|53839 : AAGCGGGA--------GTGTCATGTGGT-ACATAAGTGGTGTTT-GATTAGCGCCAA-GAAGCG--TTTCATTACAGATAACATTT-CTATTT-TTTGATAAGAAAAGTCATGAAGCG------A-GA-TGTGTCATGGAC-TACATAA
gi|53840 : AAGCGGGA--------GTGTCATGTGGT-ACATAAGTGGTGTTT-GATTAGCGCCAA-GAAGCG--TTTCATTACAGATAACATTT-CTATTT-TTTGATAAGAAAAGTCATGAAGCG------A-GA-TGTGTCATGGAC-TACATAA
gi|53841 : AAGC-AGA------TTGTGTTATAAACT-ACAGAAGTGGTGTTTTAATTAGCGTCAA-GAAACG--TTTCGTTAACGGTAACATTT-CTATTT-CGCGACAAGAAGAGTCATGAAGCG------A-GA-TGTGTCTTGGAC-TACATAA
gi|53842 : GCGAGA------T-GTGTCATGGGCT-ACATAAGTGATGTTT-GATTAGCGTCAA-GAAGCG--TTTCGTTACAGATAATATCA-CTATTT-AGCGACAAGAAAAGGCACGAAGCG------A-GA-TGAGTCACGGGC-TACAAAA
gi|53843 : GAGG------T-GTGTCATGGACT-ACATCA-TGGTGATT-GATAAGCGTCAA-GAAGCA--TTTTGTTATAGATAACATTA-CTTTTT-AGCGACAAGAAGAGTCAAGAAACG------A-AA-TGTGTCATGTGC-TAGATAA
gi|53844 : AGA------T-GTGTTATATGCT-ACATATGTGGTGTTT-GATTTGCGTCAA-GAAGTG--TTTCGTTACGGGTAACATTT-CTATTT-AGAAACAAGAAGTGTCATTAAGC-------A-GATTGTGTTATAAAC-TACAGAA
gi|53845 : GTCATGGACT-ACATCA-TGGTGATT-GATAAGCGTCAA-GAAGCA--TTTCGTTATAGATAACATTA-CTTTTT-AGCGACAAGAAGAGTCAAGAAACG------A-AA-TGTGTCATGTGC-TAGATAA
gi|53846 : GTCATGGACT-ACATCA-TGGTGATT-GATAAGCGTCAA-GAAGCA--TTTCGTTATAGATAACATTA-CTTTTT-AGCGACAAGAAGAGTCAAGAAACG------A-AA-TGTGTCATGTGC-TAGATAA
gi|53847 : T-GATTAGCGTCAA-GAAGCG--TTGCGTTACAGATAACATCA-CTATTT-AGCAACAAGAAAAGTTAAGAAGCG------A-AA-TGTGCCATGTTCTTACATAA
gi|53848 : TTAGCGTCAA-GAAATC--TTTC-----AGGTAAAATCA-CTATTT-AGCGACAAGAAGAGTCAAGAA
gi|53849 : AGAGTCAA-GAAATG--TTTCGCTACAGGTAATATCA-CTATTT-AGC----------GTCAAGAAGCG------ACG---GTGTCATGGAC-TACATAa
gi|53850 : G--TTTCGTTACAGATAACAGTA--GATTTAAGCAACAAGAAGAGTCACTATGCG------A-GA-TGTGTCATGGGC-TACATAA
gi|53851 : ACAGGTATCATCA-CTATTT-AGCGACAGGAAGAGTCTAGAAGCG------A-AA-TATGTCATGTGC-TAAATA
gi|53852 : T-AGCGATAAAAAGAGTAAAGAAGCA------A-GT-AATGTCATAGAC-TACATAA
gi|53853 : T-AGCGATAAGAAGAGTCAAGAAGCA------A-GT-TATGTCATAGAC-TACATAA
Alignments
lowQualScore : 777777 0 0 2 0 1 33 0 0 777777 0 0 1 0
lowQualScore : ...... . . . . . .. . . ...... . . . .
lowQualScore : 555555 9 8 3 8 6 22 8 8 000000 8 8 0 9
consensus : GAAGCGAGA------T-GTGTCATGGGCT-ACATAAGTGGTGTTT-GATTAGCGTCAA-GAAGCG--TTTCGTTACAGGTAACATCA-CTATTT-AGCGACAAGAAGAGTCAAGAAGCG------A-GA-TGTGTCATGGGC-TACATAA
Reference ( family-432 ) : GAAGCGAGA------T-GTGTCATGGGCT-ACATAAGTGGTGTTT-GATTAGCGTCAA-GAAGCG--TTTCGTTACAGGTAACATCA-CTATTT-AGCGACAAGAAGAGTCAAGAAGCG------A-GA-TGTGTCATGGGC-TACATAA
gi|53799 : GAAGCGAGA------T-AAGTAATGGACT-ACATCAATGGTCTTT-GATTAGCGTCAA-GAAGCG--TTTCATTACAGGTTACATCA-CTATCT-AGCGACAAGGAGAGTCAAGAAACA------A-GA-TGTGTCATGGAC-TACATAA
gi|53800 : GAAGCAAGT------A-ATGTCATAGACT-ACATAAGTATTGTTT-GATAAGCGTCAA-GAATCG--TTTCATTACAAGTAACATAA-CTATTT-A---ACAAGAAGAGTCAGGAAGCG------A-GA-TGTGTCATGGAC-TACATAAt
gi|53801 : GAAGCGAGA------T-GTCT--TGGACT-A-A-AAATTGTGTTT-GATTAGCGTCAA-GAAGTG--TTTCGTTACAGGTAGCATCA-CTATTT-AGCGACAAAAAGAGTGAAGAAGCGAGAATCA-GA-CGTGTTATGTGC-TATATAAt
gi|53802 : GAAGCGAGA------T-GTGTCATGGACT-ACATAA-TGGTGTTT-TATTAACACCAA-GACGGG--TTTCGTCACAACTAATATTA-CTAATT-AGCGACAAGAAAAATAAAGAAGCG------A-GA-TGTCT--TGGAC-TA
gi|53803 : GAAACGAAA------T-GTGTCATGTGCT-AGATAAGTGGTGTTT-GGTTAGCGCCAT-GAAGCA--TTTCGTTACTGGTAACATC----ATTT-AGGAACAATAAGAGTCAAAAAGCG------G-GA--GTGTCATGTGG-TACATAA
gi|53804 : GAAACAAGA------T-GTGTCATGGACT-ACATAATTG-CGTTT-GAATAGTGCAAA-GAAGGG--CTTCATTACAACTAACATTA-CTATTA-AGCCACTAGAAGAATCAAATAGCG------A-TA-TGTGTCAT
gi|53805 : GAAGCGAGAATCAGAC-GTGTTATGTGCT-ATATAAGTGGGGTGT-AATTAGCGTCAA-GAAG-GATTTTTTTTACATGAAACATTA-CTAGTA-AGCGCCAAGATGAGTCAAGAG--G------A-GG-TGTGTCATGGAC-TACAT
gi|53806 : GAAGCGAGA------T-GTGTCATGGACT-ACATAAGTGATGTTT-GATAAGTGACAA-GAAGCG--CTTCcat
gi|53807 : GAAGCGAGA------T-AAGTAATGGACT-ACATCAATGGTCTTT-GATTAGCGTCAA-GAAGCG--TTTCATTACAGGTTACATCA-CTATCT-AGCGACAAGGAGAGTCAAGAAACA------A-GA-TGTGTCATGGAC-TACATAA
gi|53808 : GAAGCAAGT------T-ATGTCATAGACT-ACATAAGTATTGTTT-GACAAGCGTCAA-GAATCG--TTTCATTACAGGTAACATAA-CTATTT-A---ACAAGAAGAGTCAGGAAGCG------A-GA-TGTACCATGGAC-TACATAAt
gi|53809 : GAAGCGAGA------T-GTCT--TGGACT--TAAAAATTGTGTTT-GATTAGCGTCAA-GAAGTG--TTTCGTTACAGGTAACATCA-CTATTT-AGCGAAAAAAAGAGTGAAGAAGCGAGAATCA-GA-CGTGTTATGTGC-TATATAAt
gi|53810 : GAAGCGAGA------T-GTACCATGGACT-ACATAA-TGGTGTTT-TATTAACACCAA-TAAGGG--TTTCGTCACAGCTTATATAA-CTAATT-AGCGACAAGAAAAATAAAGAAGCG------A-GA-TGTCT--TGGAC-T
gi|53811 : GAAACGAAA------T-GTGTCATGTGCT-AGATAAGTGGTGTTT-GGTTAGCGCCAT-GAAGCA--TTTCGTTACTGGTAACATC----ATTT-AGGAACAATTAGAGTCAAAAAGCG------G-GA--GTGTCATGTGG-TACATAA
gi|53812 : GAAACAAGA------T-GTGTCATGGACT-ACATAATGGGT-TTT-GAATAAT-TCAAAGAAGGG--CTTCATTACAACTTACATTA-CTATTA-AGCCACTAGAAGAATCAAATAGCG------A-TA-TGTGTCAT
gi|53813 : GAAGCGAGAATCAGAC-GTGTTATGTGCT-ATATAAGTGGGGTGT-AATGAGCGTCAA-GAAG-GATTTTTTTTACATGAAACATTA-CTAGTA-AGCGCCAAGATGAGTCAAGAGG-G------------GTGTCATGGAC-TACAT
gi|53814 : GAAGCGAGA------T-GTGTCATGGACT-ACATAAGTGATGTTT-GATAAGTGACAA-GAAGCG--CTTCcat
gi|53815 : GAAGCGAGA------T-AAGTAATGGACT-ACATCAATGGTCTTT-GATTAGCGTCAA-GAAGCG--TTTCATTACAGGTTACATCA-CTATCT-AGCGACAAGGAGAGTCAAGAAACA------A-GA-TGTGTCATGGAC-TACATAA
gi|53816 : GAAGCAAGT------T-ATGTCATAGACT-ACATAAGTATTGTTT-GACAAGCGTCAA-GAATCG--TTTCATTACAGGTAACATAA-CTATTT-A---ACAAGAAGAGTCAGGAAGCG------A-GA-TGTACCATGGAC-TACATAAt
gi|53817 : GAAGCGAGA------T-GTCT--TGGACT--TAAAAATTGTGTTT-GATTAGCGTCAA-GAAGTG--TTTCGTTACAGGTAACATCA-CTATTT-AGCGAAAAAAAGAGTGAAGAAGCGAGAATCA-GA-CGTGTTATGTGC-TATATAAt
gi|53818 : GAAGCGAGA------T-GTACCATGGACT-ACATAA-TGGTGTTT-TATTAACACCAA-TAAGGG--TTTCGTCACAGCTTATATAA-CTAATT-AGCGACAAGAAAAATAAAGAAGCG------A-GA-TGTCT--TGGAC-T
gi|53819 : GAAACGAAA------T-GTGTCATGTGCT-AGATAAGTGGTGTTT-GGTTAGCGCCAT-GAAGCA--TTTCGTTACTGGTAACATC----ATTT-AGGAACAATTAGAGTCAAAAAGCG------G-GA--GTGTCATGTGG-TACATAA
gi|53820 : GAAACAAGA------T-GTGTCATGGACT-ACATAATGGGT-TTT-GAATAAT-TCAAAGAAGGG--CTTCATTACAACTTACATTA-CTATTA-AGCCACTAGAAGAATCAAATAGCG------A-TA-TGTGTCAT
gi|53821 : GAAGCGAGAATCAGAC-GTGTTATGTGCT-ATATAAGTGGGGTGT-AATGAGCGTCAA-GAAG-GATTTTTTTTACATGAAACATTA-CTAGTA-AGCGCCAAGATGAGTCAAGAGG-G------------GTGTCATGGAC-TACAT
gi|53822 : GAAGCGAGA------T-GTGTCATGGACT-ACATAAGTGATGTTT-GATAAGTGACAA-GAAGCG--CTTCcat
gi|53823 : GAAGCGAGA------T-GAGTCACGGGCT-ACAAAAGTGGTGTTT-GATAAGCGTCAA-GAAGCG--TTCCGTTACAGATAGCATCA-CTATTT-AGCGACATGAAGAGTCAAGAAGCA------A-AA-TGTGTCATGTGC-TACATAA
gi|53824 : GAAGCAAAA------T-GTGTCATGTGCT-ACATAAGTGGTGTTT-GATTAACGTCAA-GAAGCG--TTTAGTTACAGGTTACTTCA-CTATAT-AGCGAAAAGAAGAGTCAAGAAGCG------A-GA-TGTGTCATGTGC-TACATAA
gi|53825 : GAAGCGAGA------T-GTGTCATCGGCT-ACAAAAGTGGTGTTT-GATAAGCGTCAA-GAAGCG--TTCCGTTACAGATAACATCA-CTATTT-AGCGACAAGAAAAGGCAAGAAACG------A--A-TGTGTCATGTGC-TACATAA
gi|53826 : GAAGCGAGA------T-GTGTCATGTGCT-ACATAAATGATGTTT-GATTTGCGCCAA-GAAGCA--TTTCGTTACAAGTAACGTTA-CTATTT-AGCGACAAGATCAATCACGAAGCA------A-GA-TGTGTCATGGGC-TACATAA
gi|53827 : GAAGCGAGA------T-GTGTCTTGGACT-ACATAAATAGTGATT-GATTAGCGTCAA-GATGCG--TTTCGTTACAGGTAACATTT-CTATTT-AGCGACAAGAAGAGTCACGAAGCG------A-GA-TGAAACTTGGAC-TATATAA
gi|53828 : GATGCGAGA------T-ATGTCATGTGCT-ACATAAGTGGTATTT-GATTTGCATCAA-GATGCG--TTTCGTTACAGGTACCTTCA-ATATTT-TGCGACAAGAAGAGTCAGGAAGCA------A-GA-TGTGTCATGTGC-TACATAAt
gi|53829 : GAAGCGAAA------T-GTGCCATGTTCTTACATAAGTGGTGTTT-GATTAGCCTCAA-GAAGCG--TTTCATTACAGGTAACTTCA-CTATTT-TGCGACAAGAAGAGTCAGGATGCG------A-GA-TATGTCATGTGC-TACATAA
gi|53830 : GAAACGA-A------T-GTGTCATGTGCT-ACATAAGTAGTGTTT-GATTAGCGTCAA-GATGCG--TTTCGTTACAGGTAAC-TTATCTATTT-AGCGACCAGAAGAGCCAAGAAGCG------A-GA-TGTGTAATGGAC-TACATAA
gi|53831 : GAAGCGAGA------T-GTGTAATGGACT-ACATAAATGGTGTTA-CATTAGCGCCAA-GAATTG--TTCCGTTAAAGATAACATAA-CTATTT-AGCGACAAAAAGAGTCAAGAAGCG------A-AA-AGTGTAATGTGC-TACATAA
gi|53832 : GAAGCAAGA------T-GTGTCATGGGCT-ACATAAATGGTATTT-GATAAGCGCCAA-GAATCG--TTCCGTTACAGATAACATCA-GTATTT-AGCGATAAGAA-AGGCACGAAGCG------A-GA-TGTGTCATCGGC-TACAAAA
gi|53833 : GAAGCGAAA------A-GTGTAATGTGCT-ACATAAATCGTGTTT-GAATTGCGTCAA-GAATCG--TTTTGTTACAGGTAACATTA-CTTTTT-TGCGACAAGAAGAGTCAAGAAGGG------A-GA-TGTATCATGTGT-TACATAA
gi|53834 : GAAGCAAGA------T-GTGTCATGTGCT-ACATAAGTGGTGTAT-GATTAACGTCAA-GAAACG--TTTCGTTACACGTAACTTCA-CTATTT-AGCGACATGAAAAGTCAAGCAGTC------A-GA-TGTGTTATATGC-TACATA
gi|53835 : GAAGCGAGA------T-GAAACTTGGACT-ATATAATTGGTGT------------------------------TAAAGATAACATCA-TTATTC-ATCGACAAGAAGAGTCAAGAGGCG------A-GA-TGTATCATGAGC-TACATAA
gi|53836 : GAGGCGAGA------T-GTATCATGAGCT-ACATAAGTGGTTCTT-GATTAGTATCAA-GAAACG--TTGCGTTACA
gi|53837 : GAAGGGAGA------T-GTATCATGTGTT-ACATAAATAGTGTTT-GATTTGCGTCAA-GAAGCG--TTT
gi|53838 : AAGCGGGA--------GTGTCATGTGGT-ACATAAGTGGTGTTT-GATTAGCGCCAA-GAAGCG--TTTCGTTACAGATAACATTT-CTATTT-TTCGATAAGAAAAGTCGTGAAGCG------A-GA-TGTGTCATGGAC-TACATAA
gi|53839 : AAGCGGGA--------GTGTCATGTGGT-ACATAAGTGGTGTTT-GATTAGCGCCAA-GAAGCG--TTTCATTACAGATAACATTT-CTATTT-TTTGATAAGAAAAGTCATGAAGCG------A-GA-TGTGTCATGGAC-TACATAA
gi|53840 : AAGCGGGA--------GTGTCATGTGGT-ACATAAGTGGTGTTT-GATTAGCGCCAA-GAAGCG--TTTCATTACAGATAACATTT-CTATTT-TTTGATAAGAAAAGTCATGAAGCG------A-GA-TGTGTCATGGAC-TACATAA
gi|53841 : AAGC-AGA------TTGTGTTATAAACT-ACAGAAGTGGTGTTTTAATTAGCGTCAA-GAAACG--TTTCGTTAACGGTAACATTT-CTATTT-CGCGACAAGAAGAGTCATGAAGCG------A-GA-TGTGTCTTGGAC-TACATAA
gi|53842 : GCGAGA------T-GTGTCATGGGCT-ACATAAGTGATGTTT-GATTAGCGTCAA-GAAGCG--TTTCGTTACAGATAATATCA-CTATTT-AGCGACAAGAAAAGGCACGAAGCG------A-GA-TGAGTCACGGGC-TACAAAA
gi|53843 : GAGG------T-GTGTCATGGACT-ACATCA-TGGTGATT-GATAAGCGTCAA-GAAGCA--TTTTGTTATAGATAACATTA-CTTTTT-AGCGACAAGAAGAGTCAAGAAACG------A-AA-TGTGTCATGTGC-TAGATAA
gi|53844 : AGA------T-GTGTTATATGCT-ACATATGTGGTGTTT-GATTTGCGTCAA-GAAGTG--TTTCGTTACGGGTAACATTT-CTATTT-AGAAACAAGAAGTGTCATTAAGC-------A-GATTGTGTTATAAAC-TACAGAA
gi|53845 : GTCATGGACT-ACATCA-TGGTGATT-GATAAGCGTCAA-GAAGCA--TTTCGTTATAGATAACATTA-CTTTTT-AGCGACAAGAAGAGTCAAGAAACG------A-AA-TGTGTCATGTGC-TAGATAA
gi|53846 : GTCATGGACT-ACATCA-TGGTGATT-GATAAGCGTCAA-GAAGCA--TTTCGTTATAGATAACATTA-CTTTTT-AGCGACAAGAAGAGTCAAGAAACG------A-AA-TGTGTCATGTGC-TAGATAA
gi|53847 : T-GATTAGCGTCAA-GAAGCG--TTGCGTTACAGATAACATCA-CTATTT-AGCAACAAGAAAAGTTAAGAAGCG------A-AA-TGTGCCATGTTCTTACATAA
gi|53848 : TTAGCGTCAA-GAAATC--TTTC-----AGGTAAAATCA-CTATTT-AGCGACAAGAAGAGTCAAGAA
gi|53849 : AGAGTCAA-GAAATG--TTTCGCTACAGGTAATATCA-CTATTT-AGC----------GTCAAGAAGCG------ACG---GTGTCATGGAC-TACATAa
gi|53850 : G--TTTCGTTACAGATAACAGTA--GATTTAAGCAACAAGAAGAGTCACTATGCG------A-GA-TGTGTCATGGGC-TACATAA
gi|53851 : ACAGGTATCATCA-CTATTT-AGCGACAGGAAGAGTCTAGAAGCG------A-AA-TATGTCATGTGC-TAAATA
gi|53852 : T-AGCGATAAAAAGAGTAAAGAAGCA------A-GT-AATGTCATAGAC-TACATAA
gi|53853 : T-AGCGATAAGAAGAGTCAAGAAGCA------A-GT-TATGTCATAGAC-TACATAA
blockSeqs : ATCAGA G A AT AGAATC G
blockSeqs : ATCAGA A A AT AGAATC T
blockSeqs : ATCAGA G . AT AGAATC G
blockSeqs : . T . . . T
blockSeqs : . G . . . G
blockSeqs : . G . . . G
blockSeqs : . A . . . G
blockSeqs : . G . . . T
blockSeqs : . A . . . G
blockSeqs : . G . . . T
blockSeqs : . T . . . G
blockSeqs : . G . . . G
blockSeqs : . G . . . G
blockSeqs : . A . . . T
blockSeqs : . G . . . G
blockSeqs : . A . . . T
blockSeqs : . G . . . G
blockSeqs : . T . . . T
blockSeqs : . G . . . T
blockSeqs : . G . . . T
blockSeqs : . G . . . G
blockSeqs : . G . . . G
blockSeqs : . G . . . T
blockSeqs : . A . . . T
blockSeqs : . A . . . G
blockSeqs : . G . . . T
blockSeqs : . G . . . G
blockSeqs : . G . . . T
blockSeqs : . A . . . T
blockSeqs : . A . . . A
blockSeqs : . A . . . G
blockSeqs : . G . . . G
blockSeqs : . T . . . G
blockSeqs : . G . . . G
blockSeqs : . A . . . G
blockSeqs : . G . . . T
blockSeqs : . G . . . A
blockSeqs : . G . . . T
blockSeqs : . G . . . T
blockSeqs : . G . . . T
blockSeqs : . G . . . G
blockSeqs : . . . . . G
blockSeqs : . . . . . T
blockSeqs : . . . . . G
blockSeqs : . . . . . G
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : .
blockSeqCons :
originalCons : GAAGCGAGA------T-GTGTCATGGGCT-ACATAAGTGGTGTTT-GATTAGCGTCAA-GAAGCG--TTTCGTTACAGGTAACATCA-CTATTT-AGCGACAAGAAGAGTCAAGAAGCG------A-GA-TGTGTCATGGGC-TACATAA
finalCons : GAAGCGAGA------T-GTGTCATGGGCT-ACATAAGTGGTGTTT-GATTAGCGTCAA-GAAGCG--TTTCGTTACAGGTAACATCA-CTATTT-AGCGACAAGAAGAGTCAAGAAGCG------A-GA-TGTGTCATGGGC-TACATAA
Alignments
lowQualScore : 777777 0 0 2 0 1 33 0 0 777777 0 0 1 0
lowQualScore : ...... . . . . . .. . . ...... . . . .
lowQualScore : 555555 9 8 3 8 6 22 8 8 000000 8 8 0 9
consensus : GAAGCGAGA------T-GTGTCATGGGCT-ACATAAGTGGTGTTT-GATTAGCGTCAA-GAAGCG--TTTCGTTACAGGTAACATCA-CTATTT-AGCGACAAGAAGAGTCAAGAAGCG------A-GA-TGTGTCATGGGC-TACATAA
Reference ( family-432 ) : GAAGCGAGA------T-GTGTCATGGGCT-ACATAAGTGGTGTTT-GATTAGCGTCAA-GAAGCG--TTTCGTTACAGGTAACATCA-CTATTT-AGCGACAAGAAGAGTCAAGAAGCG------A-GA-TGTGTCATGGGC-TACATAA
gi|53799 : GAAGCGAGA------T-AAGTAATGGACT-ACATCAATGGTCTTT-GATTAGCGTCAA-GAAGCG--TTTCATTACAGGTTACATCA-CTATCT-AGCGACAAGGAGAGTCAAGAAACA------A-GA-TGTGTCATGGAC-TACATAA
gi|53800 : GAAGCAAGT------A-ATGTCATAGACT-ACATAAGTATTGTTT-GATAAGCGTCAA-GAATCG--TTTCATTACAAGTAACATAA-CTATTT-A---ACAAGAAGAGTCAGGAAGCG------A-GA-TGTGTCATGGAC-TACATAAt
gi|53801 : GAAGCGAGA------T-GTCT--TGGACT-A-A-AAATTGTGTTT-GATTAGCGTCAA-GAAGTG--TTTCGTTACAGGTAGCATCA-CTATTT-AGCGACAAAAAGAGTGAAGAAGCGAGAATCA-GA-CGTGTTATGTGC-TATATAAt
gi|53802 : GAAGCGAGA------T-GTGTCATGGACT-ACATAA-TGGTGTTT-TATTAACACCAA-GACGGG--TTTCGTCACAACTAATATTA-CTAATT-AGCGACAAGAAAAATAAAGAAGCG------A-GA-TGTCT--TGGAC-TA
gi|53803 : GAAACGAAA------T-GTGTCATGTGCT-AGATAAGTGGTGTTT-GGTTAGCGCCAT-GAAGCA--TTTCGTTACTGGTAACATC----ATTT-AGGAACAATAAGAGTCAAAAAGCG------G-GA--GTGTCATGTGG-TACATAA
gi|53804 : GAAACAAGA------T-GTGTCATGGACT-ACATAATTG-CGTTT-GAATAGTGCAAA-GAAGGG--CTTCATTACAACTAACATTA-CTATTA-AGCCACTAGAAGAATCAAATAGCG------A-TA-TGTGTCAT
gi|53805 : GAAGCGAGAATCAGAC-GTGTTATGTGCT-ATATAAGTGGGGTGT-AATTAGCGTCAA-GAAG-GATTTTTTTTACATGAAACATTA-CTAGTA-AGCGCCAAGATGAGTCAAGAG--G------A-GG-TGTGTCATGGAC-TACAT
gi|53806 : GAAGCGAGA------T-GTGTCATGGACT-ACATAAGTGATGTTT-GATAAGTGACAA-GAAGCG--CTTCcat
gi|53807 : GAAGCGAGA------T-AAGTAATGGACT-ACATCAATGGTCTTT-GATTAGCGTCAA-GAAGCG--TTTCATTACAGGTTACATCA-CTATCT-AGCGACAAGGAGAGTCAAGAAACA------A-GA-TGTGTCATGGAC-TACATAA
gi|53808 : GAAGCAAGT------T-ATGTCATAGACT-ACATAAGTATTGTTT-GACAAGCGTCAA-GAATCG--TTTCATTACAGGTAACATAA-CTATTT-A---ACAAGAAGAGTCAGGAAGCG------A-GA-TGTACCATGGAC-TACATAAt
gi|53809 : GAAGCGAGA------T-GTCT--TGGACT--TAAAAATTGTGTTT-GATTAGCGTCAA-GAAGTG--TTTCGTTACAGGTAACATCA-CTATTT-AGCGAAAAAAAGAGTGAAGAAGCGAGAATCA-GA-CGTGTTATGTGC-TATATAAt
gi|53810 : GAAGCGAGA------T-GTACCATGGACT-ACATAA-TGGTGTTT-TATTAACACCAA-TAAGGG--TTTCGTCACAGCTTATATAA-CTAATT-AGCGACAAGAAAAATAAAGAAGCG------A-GA-TGTCT--TGGAC-T
gi|53811 : GAAACGAAA------T-GTGTCATGTGCT-AGATAAGTGGTGTTT-GGTTAGCGCCAT-GAAGCA--TTTCGTTACTGGTAACATC----ATTT-AGGAACAATTAGAGTCAAAAAGCG------G-GA--GTGTCATGTGG-TACATAA
gi|53812 : GAAACAAGA------T-GTGTCATGGACT-ACATAATGGGT-TTT-GAATAAT-TCAAAGAAGGG--CTTCATTACAACTTACATTA-CTATTA-AGCCACTAGAAGAATCAAATAGCG------A-TA-TGTGTCAT
gi|53813 : GAAGCGAGAATCAGAC-GTGTTATGTGCT-ATATAAGTGGGGTGT-AATGAGCGTCAA-GAAG-GATTTTTTTTACATGAAACATTA-CTAGTA-AGCGCCAAGATGAGTCAAGAGG-G------------GTGTCATGGAC-TACAT
gi|53814 : GAAGCGAGA------T-GTGTCATGGACT-ACATAAGTGATGTTT-GATAAGTGACAA-GAAGCG--CTTCcat
gi|53815 : GAAGCGAGA------T-AAGTAATGGACT-ACATCAATGGTCTTT-GATTAGCGTCAA-GAAGCG--TTTCATTACAGGTTACATCA-CTATCT-AGCGACAAGGAGAGTCAAGAAACA------A-GA-TGTGTCATGGAC-TACATAA
gi|53816 : GAAGCAAGT------T-ATGTCATAGACT-ACATAAGTATTGTTT-GACAAGCGTCAA-GAATCG--TTTCATTACAGGTAACATAA-CTATTT-A---ACAAGAAGAGTCAGGAAGCG------A-GA-TGTACCATGGAC-TACATAAt
gi|53817 : GAAGCGAGA------T-GTCT--TGGACT--TAAAAATTGTGTTT-GATTAGCGTCAA-GAAGTG--TTTCGTTACAGGTAACATCA-CTATTT-AGCGAAAAAAAGAGTGAAGAAGCGAGAATCA-GA-CGTGTTATGTGC-TATATAAt
gi|53818 : GAAGCGAGA------T-GTACCATGGACT-ACATAA-TGGTGTTT-TATTAACACCAA-TAAGGG--TTTCGTCACAGCTTATATAA-CTAATT-AGCGACAAGAAAAATAAAGAAGCG------A-GA-TGTCT--TGGAC-T
gi|53819 : GAAACGAAA------T-GTGTCATGTGCT-AGATAAGTGGTGTTT-GGTTAGCGCCAT-GAAGCA--TTTCGTTACTGGTAACATC----ATTT-AGGAACAATTAGAGTCAAAAAGCG------G-GA--GTGTCATGTGG-TACATAA
gi|53820 : GAAACAAGA------T-GTGTCATGGACT-ACATAATGGGT-TTT-GAATAAT-TCAAAGAAGGG--CTTCATTACAACTTACATTA-CTATTA-AGCCACTAGAAGAATCAAATAGCG------A-TA-TGTGTCAT
gi|53821 : GAAGCGAGAATCAGAC-GTGTTATGTGCT-ATATAAGTGGGGTGT-AATGAGCGTCAA-GAAG-GATTTTTTTTACATGAAACATTA-CTAGTA-AGCGCCAAGATGAGTCAAGAGG-G------------GTGTCATGGAC-TACAT
gi|53822 : GAAGCGAGA------T-GTGTCATGGACT-ACATAAGTGATGTTT-GATAAGTGACAA-GAAGCG--CTTCcat
gi|53823 : GAAGCGAGA------T-GAGTCACGGGCT-ACAAAAGTGGTGTTT-GATAAGCGTCAA-GAAGCG--TTCCGTTACAGATAGCATCA-CTATTT-AGCGACATGAAGAGTCAAGAAGCA------A-AA-TGTGTCATGTGC-TACATAA
gi|53824 : GAAGCAAAA------T-GTGTCATGTGCT-ACATAAGTGGTGTTT-GATTAACGTCAA-GAAGCG--TTTAGTTACAGGTTACTTCA-CTATAT-AGCGAAAAGAAGAGTCAAGAAGCG------A-GA-TGTGTCATGTGC-TACATAA
gi|53825 : GAAGCGAGA------T-GTGTCATCGGCT-ACAAAAGTGGTGTTT-GATAAGCGTCAA-GAAGCG--TTCCGTTACAGATAACATCA-CTATTT-AGCGACAAGAAAAGGCAAGAAACG------A--A-TGTGTCATGTGC-TACATAA
gi|53826 : GAAGCGAGA------T-GTGTCATGTGCT-ACATAAATGATGTTT-GATTTGCGCCAA-GAAGCA--TTTCGTTACAAGTAACGTTA-CTATTT-AGCGACAAGATCAATCACGAAGCA------A-GA-TGTGTCATGGGC-TACATAA
gi|53827 : GAAGCGAGA------T-GTGTCTTGGACT-ACATAAATAGTGATT-GATTAGCGTCAA-GATGCG--TTTCGTTACAGGTAACATTT-CTATTT-AGCGACAAGAAGAGTCACGAAGCG------A-GA-TGAAACTTGGAC-TATATAA
gi|53828 : GATGCGAGA------T-ATGTCATGTGCT-ACATAAGTGGTATTT-GATTTGCATCAA-GATGCG--TTTCGTTACAGGTACCTTCA-ATATTT-TGCGACAAGAAGAGTCAGGAAGCA------A-GA-TGTGTCATGTGC-TACATAAt
gi|53829 : GAAGCGAAA------T-GTGCCATGTTCTTACATAAGTGGTGTTT-GATTAGCCTCAA-GAAGCG--TTTCATTACAGGTAACTTCA-CTATTT-TGCGACAAGAAGAGTCAGGATGCG------A-GA-TATGTCATGTGC-TACATAA
gi|53830 : GAAACGA-A------T-GTGTCATGTGCT-ACATAAGTAGTGTTT-GATTAGCGTCAA-GATGCG--TTTCGTTACAGGTAAC-TTATCTATTT-AGCGACCAGAAGAGCCAAGAAGCG------A-GA-TGTGTAATGGAC-TACATAA
gi|53831 : GAAGCGAGA------T-GTGTAATGGACT-ACATAAATGGTGTTA-CATTAGCGCCAA-GAATTG--TTCCGTTAAAGATAACATAA-CTATTT-AGCGACAAAAAGAGTCAAGAAGCG------A-AA-AGTGTAATGTGC-TACATAA
gi|53832 : GAAGCAAGA------T-GTGTCATGGGCT-ACATAAATGGTATTT-GATAAGCGCCAA-GAATCG--TTCCGTTACAGATAACATCA-GTATTT-AGCGATAAGAA-AGGCACGAAGCG------A-GA-TGTGTCATCGGC-TACAAAA
gi|53833 : GAAGCGAAA------A-GTGTAATGTGCT-ACATAAATCGTGTTT-GAATTGCGTCAA-GAATCG--TTTTGTTACAGGTAACATTA-CTTTTT-TGCGACAAGAAGAGTCAAGAAGGG------A-GA-TGTATCATGTGT-TACATAA
gi|53834 : GAAGCAAGA------T-GTGTCATGTGCT-ACATAAGTGGTGTAT-GATTAACGTCAA-GAAACG--TTTCGTTACACGTAACTTCA-CTATTT-AGCGACATGAAAAGTCAAGCAGTC------A-GA-TGTGTTATATGC-TACATA
gi|53835 : GAAGCGAGA------T-GAAACTTGGACT-ATATAATTGGTGT------------------------------TAAAGATAACATCA-TTATTC-ATCGACAAGAAGAGTCAAGAGGCG------A-GA-TGTATCATGAGC-TACATAA
gi|53836 : GAGGCGAGA------T-GTATCATGAGCT-ACATAAGTGGTTCTT-GATTAGTATCAA-GAAACG--TTGCGTTACA
gi|53837 : GAAGGGAGA------T-GTATCATGTGTT-ACATAAATAGTGTTT-GATTTGCGTCAA-GAAGCG--TTT
gi|53838 : AAGCGGGA--------GTGTCATGTGGT-ACATAAGTGGTGTTT-GATTAGCGCCAA-GAAGCG--TTTCGTTACAGATAACATTT-CTATTT-TTCGATAAGAAAAGTCGTGAAGCG------A-GA-TGTGTCATGGAC-TACATAA
gi|53839 : AAGCGGGA--------GTGTCATGTGGT-ACATAAGTGGTGTTT-GATTAGCGCCAA-GAAGCG--TTTCATTACAGATAACATTT-CTATTT-TTTGATAAGAAAAGTCATGAAGCG------A-GA-TGTGTCATGGAC-TACATAA
gi|53840 : AAGCGGGA--------GTGTCATGTGGT-ACATAAGTGGTGTTT-GATTAGCGCCAA-GAAGCG--TTTCATTACAGATAACATTT-CTATTT-TTTGATAAGAAAAGTCATGAAGCG------A-GA-TGTGTCATGGAC-TACATAA
gi|53841 : AAGC-AGA------TTGTGTTATAAACT-ACAGAAGTGGTGTTTTAATTAGCGTCAA-GAAACG--TTTCGTTAACGGTAACATTT-CTATTT-CGCGACAAGAAGAGTCATGAAGCG------A-GA-TGTGTCTTGGAC-TACATAA
gi|53842 : GCGAGA------T-GTGTCATGGGCT-ACATAAGTGATGTTT-GATTAGCGTCAA-GAAGCG--TTTCGTTACAGATAATATCA-CTATTT-AGCGACAAGAAAAGGCACGAAGCG------A-GA-TGAGTCACGGGC-TACAAAA
gi|53843 : GAGG------T-GTGTCATGGACT-ACATCA-TGGTGATT-GATAAGCGTCAA-GAAGCA--TTTTGTTATAGATAACATTA-CTTTTT-AGCGACAAGAAGAGTCAAGAAACG------A-AA-TGTGTCATGTGC-TAGATAA
gi|53844 : AGA------T-GTGTTATATGCT-ACATATGTGGTGTTT-GATTTGCGTCAA-GAAGTG--TTTCGTTACGGGTAACATTT-CTATTT-AGAAACAAGAAGTGTCATTAAGC-------A-GATTGTGTTATAAAC-TACAGAA
gi|53845 : GTCATGGACT-ACATCA-TGGTGATT-GATAAGCGTCAA-GAAGCA--TTTCGTTATAGATAACATTA-CTTTTT-AGCGACAAGAAGAGTCAAGAAACG------A-AA-TGTGTCATGTGC-TAGATAA
gi|53846 : GTCATGGACT-ACATCA-TGGTGATT-GATAAGCGTCAA-GAAGCA--TTTCGTTATAGATAACATTA-CTTTTT-AGCGACAAGAAGAGTCAAGAAACG------A-AA-TGTGTCATGTGC-TAGATAA
gi|53847 : T-GATTAGCGTCAA-GAAGCG--TTGCGTTACAGATAACATCA-CTATTT-AGCAACAAGAAAAGTTAAGAAGCG------A-AA-TGTGCCATGTTCTTACATAA
gi|53848 : TTAGCGTCAA-GAAATC--TTTC-----AGGTAAAATCA-CTATTT-AGCGACAAGAAGAGTCAAGAA
gi|53849 : AGAGTCAA-GAAATG--TTTCGCTACAGGTAATATCA-CTATTT-AGC----------GTCAAGAAGCG------ACG---GTGTCATGGAC-TACATAa
gi|53850 : G--TTTCGTTACAGATAACAGTA--GATTTAAGCAACAAGAAGAGTCACTATGCG------A-GA-TGTGTCATGGGC-TACATAA
gi|53851 : ACAGGTATCATCA-CTATTT-AGCGACAGGAAGAGTCTAGAAGCG------A-AA-TATGTCATGTGC-TAAATA
gi|53852 : T-AGCGATAAAAAGAGTAAAGAAGCA------A-GT-AATGTCATAGAC-TACATAA
gi|53853 : T-AGCGATAAGAAGAGTCAAGAAGCA------A-GT-TATGTCATAGAC-TACATAA