lowQualScore : 11111111111111
lowQualScore : 0 22 1 0 0 66666666666666 2222 7777 111 1111 0 0 22222222 0 2222222 0 111 0
lowQualScore : . .. . . . .............. .... .... ... .... . . ........ . ....... . ... .
lowQualScore : 6 99 4 7 7 66666666666666 2222 2222 222 4444 6 6 33333333 6 3333333 5 999 7
consensus : TGCGGACAAAAGTCG-NCG-TTTT-T-CT----AA----N--TT----TT----CT---GCGGACAAA----A-GG-CG--------T-CA-------TGCGGACA-AAA---GTC-GACGTTTTTCTA
Reference ( gi|42828 ) : TGCGGACAAAAGTCG-ACG-TTTT-T-CT----AA----A--CT----TT----CT---GCGGACAAA----A-GG-CG--------T-CA-------TGCGGACA-AAA---GTC-GACGTTTTTCTA
gi|42830 : TGCGGACAAAAGTCG-ACG-TTTT-T-GT----GA----T--TT----TT----CT---GCGGACAAA----A-AG-CG--------T-CA-------TGCGGACA-AAA---GTC-GACGTTTTTCTA
gi|42827 : TGCGGACAAAAGTCG-ACG-TTTT-T-CT----AA----A--TT----TT----CT---GCGGATAAA----A-GG-CG--------T-CA-------TGCGGACA-AAA---GGC-GTCATTTTTCTA
gi|42833 : TGCGGACAAAAGTCG-ACG-TTTT-T-CT----AA----A--TT----TT----CT---GCGGATAAA----A-GG-CG--------T-CA-------TACGGACA-AAA---GGC-GTCATTTTTCTA
gi|42839 : TGCGGACAAAAGTCG-ACG-TTTT-T-CT----AA----A--TT----TTT---CT---GCGGATAAA----A-AG-CG--------T-CA-------TGCGGACA-AAA---GGC-GTCATTTTTCTA
gi|42841 : TGCGGACAAAAGTCG-ACG-TTTT-T-AT----GA----T--TT----TT----CT---GCGGACAAA----A-GG-CG--------T-CA-------TGCGGACA-AAA---GGC-GTCATTTTTCTA
gi|42850 : TGCGGACAAAAGGCG-TCG-TTTT-T-CT----AA----A--CT----TT----CC---GCGGATAAA----A-GG-CG--------T-CA-------TGTGGACA-AAA---GGC-GTCATTTTTCTA
gi|42845 : TGCGGACAAAAGGCG-TCA-TTTT-T-CC----AA----A--TT----TT----CT---GCGGGCAAA----A-GT-CG--------T-CA-------TGCGGACA-AAA---GTC-GACGATTTTCT
gi|42846 : TGCGGATAAAAGGCG-TCA-TTTT-T-CT----AA----C--TT----TT----CT---GCGGATAAA----A-GG-CG--------T-TA-------TGCGGACA-AAA---GTCGGACGTTTTTCTA
gi|42838 : TGCGGACAAAAGGCG-TCA-TTTT-T-CT----AA----A--TT----TT----CT---GCAGACAAA----A-GG-CG--------T-CA-------TGCGGATA-AAA---GGC-GTCATTTTTCTA
gi|42836 : TGCGGACAAAAGTCG-ACG-TTTT-G-TG----AT----T--TT----TT----CT---GCGGACAAA----A-GG-AG--------T-CT-------TGCGGACA-AAA---GTC-GACGTTTTTCTA
gi|42847 : TGCGGACAAAAAGCG-TCA-TTTT-T-CT----GA----A--TT----TT----CT---GCGGATAAA----A-GG-CG--------T-CG-------TGCGGACA-AAA---GTT-GACGTTTTTTT
gi|42831 : TGCGGACAAAAGGCG-TCA-TTTT-T-CC----AA----A--TT----TT----CT---GCGGATAAA----A-GT-CG--------T-CG-------TGCGGACA-AAA---GTC-GACGATTTTCT
gi|42840 : TGCGGACAAAAGGCG-TCA-TTTT-T-CT----AA----A--TT----TT----CT---GCGGACACA----A-TG-CG--------T-CA-------TGCGGACA-AAA---GGC-GTCATTTTTCTA
gi|42835 : TGCGGACAAAAGGCG-TCA-TTTT-T-CC----AA----A--TT----TT----CT---TCGGATAAA----A-GT-CG--------T-CA-------TGCGGACA-AAA---GTC-GACGATTTTCT
gi|42856 : TGCGAACAAAAGGCG-TGA-TTTT-T-CC----AA----A--TT----TT----CT---TCGGATAAA----A-GT-CG--------T-CA-------TGCGGACA-AAA---GTC-GACGTTTTTCTA
gi|42843 : TGCGGACAAAAGTCGGACG-TTTT-T-CT----AA----T--TT----TT----TT---GAGGATAAA----A-GG-CG--------T-CA-------TGCGGACA-AAA---AGC-GTCATTTTTCT
gi|42842 : TGCGGACAAAAGGCG-TCA-TTTT-T-CT----AT----T--TT----TT----CT---GCGGACAAA----A-GG-CG--------T-CA-------TGCGGACA-AAA---GGC-GTCATTTTTCCA
gi|42855 : TGCGGACAAAATTCG-ACG-TTTT-TTCT----GA----T--TT----TT----CT---GCGGACAAA----A-GG-CG--------T-CA-------TACGGACA-AAA---GAC-GTCATTTTT
gi|42851 : TGCAGACAAAAGGCG-CAA-TTTT-T-CC----AA----A--TT----TT----CT---GCGGATAAA----A-GT-CG--------T-CA-------TGAGGACA-AAA---GTC-GACGTTTTT
gi|42829 : TGCGGACAAAAGGCG-TCA-TTTT-T-CT----AT----T--TT----GT----CT---GCGGACAAA----A-GG-CG--------T-CA-------TGCGGACA-AAA---GGC-GTCATTTTTCCA
gi|42834 : TACGGACAAAAGGCG-TCA-TTTT-T-CT----AT----T--TT----TT----CT---GCGGACAAA----A-GG-CG--------T-CT-------TGCGGACA-AAA---GGC-GTCATTTTTCCA
gi|42844 : TGCGGACAAAAAGCG-TCA-TTTT-T-CT-------------TT----TTTTTTCT---GCGGACAAA----A-GG-CG--------T-CA-------TGCGGACA-AAA---AGC-GTCATTTTTCT
gi|42857 : TGCGGACAAAAGTCG-ACG-TTTT-T-CT----AT----T--TT----TT----CT---GTGGATAAA----A-AG-CG--------T----------TGCGGACA-AAA---
gi|42884 : TGCGGATAAAAGTCG-ACG-TTTT-T-CT----Aagtgtca
gi|42837 : ttttctgcggataaaagtcgtcaTGCGGACAAAAGTCG-ACG-ATTT-T-CT----TT----T--TT----TT----CT---GCGGATAAA----A-AG-CG--------T----------TGCGGACA-AAA---
gi|42861 : TGCGGACAAAAGCCG-GCG-TATT-T-C------G----A--TT----TTTGTTCT---GCGGACAAA----A-AAACG--------T-AA-------TGCGGACA-AAG---GCC-GGCGTATTTCcgtca
gi|42832 : TGCGGACAAAAGTCG-ACG-ATTT-T-CT-------------TTTTTCTT----CT---GCGGATAAA----A-AG-CG--------T----------TGCGGACA-AAAAGCGTC-GA
gi|42849 : TGCGGACAAAAGTCG-ACG-ATTT-T-CT----TT----T--TT----TT----CT---GCGGATAAA----A-CG-CG--------T----------TGCGGACA-AAA---gcggacaaaaagcgcat
gi|42866 : TGCGGACAAAAGTTG-ACG-TATT-T-CT-----A----T--TT----TT----CT---GTGGACAAA----A-AG-CG--------T----------TGCGGGCA-AAA---agcgtca
gi|42863 : TGCGGAAGAAAGTCT-TCA-TTTT-T-TT----AC----A--TT----TT----CTTTTGTGGACAAA----A-GA-GG--------T-CA-------TGTGGCCA-AAG---G-C-GACGTTTTTTTAtgcgttaggcagacaaaatgtgccgtca
gi|42865 : TGTGGACAAAAGTCT-TCA-TTGT-C-CT----AA----A--TT----CT----CT---ACAGACATA----A-GG-CG--------T-CA-------TGTTGATA-AAA---TAT-GACGTATTTCTA
gi|42859 : TGCGGATAAAAGTCG-ACG-TTTT-T-CT-----A----T--TT----TT----TT---GCAGATAAA----A-AG-CG--------T----------TGCAGACA-AAA---
gi|42848 : TGCGGACAAAAGTTG-ACGTTTTT-T-TT----GT----T--TT----TT----CT---GCGGATAAA----A-AG-CG--------T-C---------GCGGACA-AAA---agcgtca
gi|42852 : TGAGGACAAAAGTCG-ACG-TTTT-T--T----AT----ATTTT----TT----CT---GCGGATAAA----A-AG-CG--------T-CGC------TGTGGACA-AAA---agcgtcat
gi|42886 : TGCGGACAAAAGTCG-ACG-TTTT-T-agcgtca
gi|42854 : cggataaaaggcgtcaTGCGGACAAAAGTCG-ACGTTTTT-T-CT----GATTTTT--TT----TT----TT---GCGGACAAA----A-GG-CG--------T-CG-------T
gi|42858 : TACGGACAAAAG----ACG-TC-----------------A--TT----TT----TG---GCGGACAAA----A-GG-CG--------T-CA-------TGCGAACA-AAA---GGC-GTGATTTTTCCAttttcta
gi|42868 : TGCGGACAGAAGTCT-TCA-TTGT-T-CT----AA----A--TA----TT----TT---ACGGACAAA----A-TG-AG--------C-CT-------TATGGACA-AAA---TTT-GACGTATTT
gi|42862 : TGCGGACAAAAGTCC-ACG-TGTT-T-CT----AT----T--TT----TT----CT---GTCGA-AAA----A-AG-CG--------T----------TGCGGACA-AAA---
gi|42853 : TGCAGACAAAAGGCG-CAA-TTTT-T-CC----AA----A--TT----TT----CT---GCGGATAAA----A-GT-CG--------T-CA-------Taatgtca
gi|42853 : tgtggacaaaaggcgtcatttttctattttcttcTGTGGACAAAAGGCG-TCA-TTTT-T-CT----AT----T--TTC---TT----CT---GCAGACAAA----A-GG-CGCAATTTTTC-CAAATTTTCTGCGGATA-AAA---GTC-G
gi|42887 : TGCGGACAAAATTCG-ACG-TTTT-T-tcat
gi|42860 : cggatagaaggcgtcaTGCGGACAAAGGCCG-GCG-TATT-T-C------G----A--TT----TTTGTTCT---GCGGACAAA----A-AG-CG--------T-CA-------T-CGGATATAAA---tct
gi|42885 : TGCGGACAAAAGGCG-TCA-TTTT-T-CT----Acgtca
gi|42869 : cggatagaaggcgtcaTGTGGACAAA-GTCA-AAG-TATG-T-AT----AT----T--TT----TT----CT---GCGGACAAA----A-AG-CG--------T-CA-------AGCGAA-A-AAA---
gi|42864 : TGTGGCCAAAGG-CG-ACG-TTTT-T-TT----A--------------------------CGGACGAA----A-AG-GG--------T-CA-------AGCGGACA-AAA---
gi|42872 : CGGAAAAAAATCG-ACG-TATT-T-CT----AA----T--AT----TT----CT---GCGGACTAA----A-AG-CG--------TACA-------AAGGGACA-AAA---agcgt
gi|42871 : CGGACAAAAGTCG-CCA-TTGA-A-TT----AA----G--TT----TT----CT---GCGGACAAA----A-TG-CG--------T-CA-------TTGGGACA-Aagtg
gi|42870 : CGGACAAAAGTCG-ACG-TTTT-T-CTAAAAAA----A--TT----TT----CT---ATTGATAAATCTTA-AG-AG--------T-GA-------AGCGGACA-AAA---
gi|42873 : CGGACAGAAGTGT-TCA-TTGT-C-CT----AA----A--TT----TTT---CT---GCAGACAAA----A-GG-CG--------T-CA-------GATAAACA-AAA---TTT-GACGaacgtc
gi|42875 : GGACAGAAGTCT-TCA-TTTTAT-AT----CA----A--TT----TT----CT---GCAGACAAA----AAGG-CG--------A-TA-------TCCGGAAA-AAA---ATC-GACGTATTTCTAcatt
gi|42876 : GGACAAACGTCG-ACG-TATT-T-CT----AA----GT-TT----TT----CT---GTCGATAAA----A-AG-CT--------T----------TGTTGACA-AAAAGCGTC-AAC
gi|42874 : GGACAATGGTCG-ACG-CGTT-T--T----AA----T--TT----TTT---CT---GCTAAACAA----A-GG-CG--------T-CA-------AGCGGACA-AAA---cggacaaaaagcat
gi|42877 : GATAAAATTTG-ACG-TGTT-T-CT----AT----T--TT----TT----CT---GCGGACAAA----A-TG-CG--------T-CA-------AACGGACA-AAA---agccagtca
gi|42878 : GACAAAAGTCG-ACG-TATT-T-CT----AT----T--TT----TTC---CT---GTGGATAAA----A-AG-CG--------T----------TGCAAACA-AAA---agcgcc
gi|42867 : AAAAATAA-GCG-TATT-T-CT----AT----T--TT----TT----TT---GCG-ACAAA----A-AG-CG--------T-CA-------AGCGAACA-AAA---agcgccaagcggacaaaaaatgtca
gi|42879 : tgcggacagaaggcgtaatgcaCG-ACG-TACT-T-CT----AT----T--TT----TT----CA---GCGGACAAA----A-AG-CG--------T-TA-------AGCAGGCA-AAA---aacgcc
gi|42880 : CA-TTGT-C-CT----TA----A--TT----TT----CT---GCAGACAAA----A-GG-CG--------A-CA-------TGTTGATA-AAA---TTT-GACGTGTTTCTAaacgcat
gi|42881 : G-TTTC-T-CTCA--AAT---A--TT----TT----CT---GTGGAGAAA----C-GG-CG--------T-CA-------TGCAAACA-AAA---GTC-GAC
gi|42883 : -CT----AA----A--TA----TT----CT---GCGGACAGA----A-GG-CG--------T-AA-------TGCA---A-AAA---ATA-AGCGTATTTCTa
gi|42882 : -CT----AA----A--TT----AT----CT---GCGAAAAGG----A-GG-CG--------T-CA-------TTTGGACA-GAA---GTC-TTCATTTT
gi|42884 : T----TT----CT---GCGGATAAA----A-GT-CG--------T-CA-------TGCGGATA-AAA---GTC-GACGTTTTTCTA
gi|42867 : tT---GCGGACAGA----A-GG-CG--------T-AA-------TGCA---A-AAA---ATA-AGCGTATTTCTA
gi|42886 : CGGATAAA----A-GG-CG--------T-CA-------TGCGGACA-AAA---GTC-GACGTTTTTttttttttgcgacaaaaagcgtcaagcgaacaaaaaacgcc
gi|42887 : CGGATAGA----A-GG-CG--------T-CA-------TGCGGACA-AAA---TTC-GACGTTTTT
gi|42885 : CGGATAGA----A-GG-CG--------T-CA-------TGCGGACA-AAA---GGC-GTCATTTTTCTAtct
gi|42857 : -------TGCGGACA-AAA---GTC-GACGTTTTTCTA
gi|42837 : -------TGCGGACA-AAA---GTC-GACGATTTTCTttttttctgtggataaaaagcgttgcggacaaaaagtgtca
gi|42832 : -------TGCGGACA-AAA---GTC-GACGATTTTCTtttttttctgcggataaaaagcgttgcggacaaaagcgtca
gi|42849 : -------TGCGGACA-AAA---GTC-GACGATTTTCTtttttcttctgcggataaaaagcgttgcggacaaaaagcgtcgagcggacaaaaagcgcat
gi|42866 : -------TGCGGACA-AAA---GTT-GACGTATTTCTAtttttttctgcggataaaacgcgttgcggacaaaaagcgtca
gi|42859 : -------TGCGGATA-AAA---GTC-GACGTTTTTCTAtttttctgtggacaaaaagcgttgcgggcaaaatgcgttaggcagacaaaatgtgccgtca
gi|42848 : -------TGCGGACA-AAA---GTT-GACGTTTTTTTtttttttgcagataaaaagcgttgcagacaaaaagcgtca
gi|42852 : -------TGAGGACA-AAA---GTC-GACGTTTTTtgttttttctgcggataaaaagcgtcgcggacaaaaagcgtcat
gi|42854 : -------TGCGGACA-AAA---GTC-GACGTTTTTtatattttttctgcggataaaaagcgtcgctgtggacaaaaagcgtca
gi|42862 : -------TGCGGACA-AAA---GTC-CACGTGTTTCTAtctgatttttttttttgcggacaaaaggcgtcgtttttcta
gi|42853 : -------TGTGGACA-AAA---GGC-GTCATTTTTCTAttttttctgtcgaaaaaagcgttgcggacaaaaaatgtca
gi|42860 : -------TGCGGACA-AAG---GCC-GGCGTATTTCttttcttctgcagacaaaaggcgcaatttttccaaattttctgcggataaaagtcgtcat
gi|42872 : CGGAAA-AAA---ATC-GACGTATTTCTAgatttttgttctgcggacaaaaagcgtcatcggatataaagcgtca
gi|42870 : CGGACA-AAA---GTC-GACGTTTTTCTAatatttctgcggactaaaagcgtacaaagggacaaaaagtg
gi|42876 : GGACA-AAC---GTC-GACGTATTTCTAaaaaaattttctattgataaatcttaagagtgaagcggacaaaaaacgtc
gi|42878 : GACA-AAA---GTC-GACGTATTTCTAagtttttctgtcgataaaaagctttgttgacaaaaagcgtcaaccggacaaaaagcat
Alignments
lowQualScore : 0 11 1 0 0 0 2222 5555555 1 11 4 111 0 444444444444444 1111 0 0 22222222 0 2222222 0 111 2 1 2
lowQualScore : . .. . . . . .... ....... . .. . ... . ............... .... . . ........ . ....... . ... . . .
lowQualScore : 2 77 4 7 7 7 4444 5555555 4 99 1 222 6 000000000000000 4444 6 6 33333333 6 7777777 7 222 0 0 5
consensus : TGCGGACAAAAGTCGN-CG-TTTT-T-C-T----AA----N-TT-T--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGGACA-AAA---GTC-GNCGTTTTTCTA
Reference ( family-411 ) : TGCGGACAAAAGTCGN-CG-TTTT-T-C-T----AA----N-TT-T--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGGACA-AAA---GTC-GACGTTTTTCTA
gi|42827 : TGCGGACAAAAGTCGA-CG-TTTT-T-C-T----AA----A-TT-T--T-CT---G-CG---------------GATAAA----A-GG-CG--------T-CA-------TGCGGACA-AAA---GGC-GTCATTTTTCTA
gi|42828 : TGCGGACAAAAGTCGA-CG-TTTT-T-C-T----AA----A-CT-T--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGGACA-AAA---GTC-GACGTTTTTCTA
gi|42829 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-T----AT----T-TT-G--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGGACA-AAA---GGC-GTCATTTTTCCA
gi|42830 : TGCGGACAAAAGTCGA-CG-TTTT-T-G-T----GA----T-TT-T--T-CT---G-CG---------------GACAAA----A-AG-CG--------T-CA-------TGCGGACA-AAA---GTC-GACGTTTTTCTA
gi|42831 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-C----AA----A-TT-T--T-CT---G-CG---------------GATAAA----A-GT-CG--------T-CG-------TGCGGACA-AAA---GTC-GACGATTTTCT
gi|42832 : TGCGGACAAAAGTCGA-CG-ATTT-T-C-T----TT----T-TTCT--T-CT---G-CG---------------GATAAA----A-AG-CG--------T----------TGCGGACA-AAAAGCGTC-GA
gi|42833 : TGCGGACAAAAGTCGA-CG-TTTT-T-C-T----AA----A-TT-T--T-CT---G-CG---------------GATAAA----A-GG-CG--------T-CA-------TACGGACA-AAA---GGC-GTCATTTTTCTAgcggacaaaaagcgcat
gi|42834 : TACGGACAAAAGGCGT-CA-TTTT-T-C-T----AT----T-TT-T--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CT-------TGCGGACA-AAA---GGC-GTCATTTTTCCA
gi|42835 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-C----AA----A-TT-T--T-CT---T-CG---------------GATAAA----A-GT-CG--------T-CA-------TGCGGACA-AAA---GTC-GACGATTTTCT
gi|42836 : TGCGGACAAAAGTCGA-CG-TTTT-G-T-G----AT----T-TT-T--T-CT---G-CG---------------GACAAA----A-GG-AG--------T-CT-------TGCGGACA-AAA---GTC-GACGTTTTTCTA
gi|42837 : TGCGGACAAAAGTCGA-CG-ATTT-T-C-T----TT----T-TT-T--T-CT---G-CG---------------GATAAA----A-AG-CG--------T----------TGCGGACA-AAA---G
gi|42838 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-T----AA----A-TT-T--T-CT---G-CA---------------GACAAA----A-GG-CG--------T-CA-------TGCGGATA-AAA---GGC-GTCATTTTTCTAcgtca
gi|42839 : TGCGGACAAAAGTCGA-CG-TTTT-T-C-T----AA----A-TT-T--TTCT---G-CG---------------GATAAA----A-AG-CG--------T-CA-------TGCGGACA-AAA---GGC-GTCATTTTTCTA
gi|42840 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-T----AA----A-TT-T--T-CT---G-CG---------------GACACA----A-TG-CG--------T-CA-------TGCGGACA-AAA---GGC-GTCATTTTTCTA
gi|42841 : TGCGGACAAAAGTCGA-CG-TTTT-T-A-T----GA----T-TT-T--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGGACA-AAA---GGC-GTCATTTTTCTA
gi|42842 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-T----AT----T-TT-T--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGGACA-AAA---GGC-GTCATTTTTCCA
gi|42843 : TGCGGACAAAAGTCGGACG-TTTT-T-C-T----AA----T-TT-T--T-TT---G-AG---------------GATAAA----A-GG-CG--------T-CA-------TGCGGACA-AAA---AGC-GTCATTTTTCT
gi|42844 : TGCGGACAAAAAGCGT-CA-TTTT-T-C-T----TT----T-TT-T--TTCT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGGACA-AAA---AGC-GTCATTTTTCT
gi|42845 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-C----AA----A-TT-T--T-CT---G-CG---------------GGCAAA----A-GT-CG--------T-CA-------TGCGGACA-AAA---GTC-GACGATTTTCT
gi|42846 : TGCGGATAAAAGGCGT-CA-TTTT-T-C-T----AA----C-TT-T--T-CT---G-CG---------------GATAAA----A-GG-CG--------T-TA-------TGCGGACA-AAA---GTCGGACGTTTTTCTA
gi|42847 : TGCGGACAAAAAGCGT-CA-TTTT-T-C-T----GA----A-TT-T--T-CT---G-CG---------------GATAAA----A-GG-CG--------T-CG-------TGCGGACA-AAA---GTT-GACGTTTTTTT
gi|42848 : TGCGGACAAAAGTTGA-CGTTTTT-T-T-T----GT----T-TT-T--T-CT---G-CG---------------GATAAA----A-AG-CG--------T-C---------GCGGACA-AAA---
gi|42849 : TGCGGACAAAAGTCGA-CG-ATTT-T-C-T----TT----T-TT-T--T-CT---G-CG---------------GATAAA----A-CG-CG--------T----------TGCGGACA-AAA---agcgtcat
gi|42850 : TGCGGACAAAAGGCGT-CG-TTTT-T-C-T----AA----A-CT-T--T-CC---G-CG---------------GATAAA----A-GG-CG--------T-CA-------TGTGGACA-AAA---GGC-GTCATTTTTCTAagcgtca
gi|42851 : TGCAGACAAAAGGCGC-AA-TTTT-T-C-C----AA----A-TT-T--T-CT---G-CG---------------GATAAA----A-GT-CG--------T-CA-------TGAGGACA-AAA---GTC-GACGTTTTT
gi|42852 : TGAGGACAAAAGTCGA-CG-TTTT-T-TAT----AT----T-TT-T--T-CT---G-CG---------------GATAAA----A-AG-CG--------T-CGC------TGTGGACA-AAA---
gi|42853 : TGTGGACAAAAGGCGT-CA-TTTT-T-C-T----AT----T-TTCT--T-CT---G-CA---------------GACAAA----A-GG-CGCAATTTTTC-CAAATTTTCTGCGGATA-AAA---GTC-Gagcgtca
gi|42854 : TGCGGACAAAAGTCGA-CGTTTTT-T-C-T----GATTTTT-TT-T--T-TT---G-CG---------------GACAAA----A-GG-CG--------T-CG-------Ttcat
gi|42854 : TGCGGACAAAAGGCGT-CG-TTTT-T-C-T----Attttcta
gi|42855 : tgcggacaaaagtcgacgttttttctgattttttttttTGCGGACAAAATTCGA-CG-TTTT-TTC-T----GA----T-TT-T--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TACGGACA-AAA---GAC-GTCATTTTT
gi|42856 : TGCGAACAAAAGGCGT-GA-TTTT-T-C-C----AA----A-TT-T--T-CT---T-CG---------------GATAAA----A-GT-CG--------T-CA-------TGCGGACA-AAA---GTC-GACGTTTTTCTA
gi|42857 : TGCGGACAAAAGTCGA-CG-TTTT-T-C-T----AT----T-TT-T--T-CT---G-TG---------------GATAAA----A-AG-CG--------T----------TGCGGACA-AAA---
gi|42858 : TACGGACAAAAGACGT-CA-TTTT-T-G---------------------------G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGAACA-AAA---GGC-GTGATTTTTCCAagtgtca
gi|42859 : TGCGGATAAAAGTCGA-CG-TTTT-T-C-T-----A----T-TT-T--T-TT---G-CA---------------GATAAA----A-AG-CG--------T----------TGCAGACA-AAA---
gi|42860 : TGCGGACAAAGGCCGG-CG-TATT-T-C-G----AT----T-TT-TGTT-CT---G-CG---------------GACAAA----A-AG-CG--------T-CA-------T-CGGATATAAA---Gagcgtca
gi|42861 : TGCGGACAAAAGCCGG-CG-TATT-T-C-G----AT----T-TT-TGTT-CT---G-CG---------------GACAAA----A-AAACG--------T-AA-------TGCGGACA-AAG---GCC-GGCGTATTTCcgtca
gi|42862 : TGCGGACAAAAGTCCA-CG-TGTT-T-C-T----AT----T-TT-T--T-CT---G-TC---------------GA-AAA----A-AG-CG--------T----------TGCGGACA-AAA---
gi|42863 : TGCGGAAGAAAGTCTT-CA-TTTT-T-T-T----AC----A-TT-T--T-CTTTTG-TG---------------GACAAA----A-GA-GG--------T-CA-------TGTGGCCA-AAG---G-C-GACGTTTTTTTAaatgtca
gi|42864 : TGTGGCCAAAGG-CGA-CG-TTTT-T-T-T----A----------------------CG---------------GACGAA----A-AG-GG--------T-CA-------AGCGGACA-AAA---
gi|42865 : TGTGGACAAAAGTCTT-CA-TTGT-C-C-T----AA----A-TT-C--T-CT---A-CA---------------GACATA----A-GG-CG--------T-CA-------TGTTGATA-AAA---TAT-GACGTATTTCTAagcgt
gi|42866 : TGCGGACAAAAGTTGA-CG-TATT-T-C-T-----A----T-TT-T--T-CT---G-TG---------------GACAAA----A-AG-CG--------T----------TGCGGGCA-AAA---
gi|42867 : T---G-CG---------------GACAGA----A-GG-CG--------T-AA-------TGCA---A-AAA---ATA-AGCGTATTTCTAtgcgttaggcagacaaaatgtgccgtca
gi|42867 : AAAAATAAG-CG-TATT-T-C-T----AT----T-TT-T--T-TT---G-CG----------------ACAAA----A-AG-CG--------T-CA-------AGCGAACA-AAA---ttttttttgcgacaaaaagcgtcaagcgaacaaaaaacgcc
gi|42868 : tgcggacagaaggcgtaatgcaTGCGGACAGAAGTCTT-CA-TTGT-T-C-T----AA----A-TA-T--T-TT---A-CG---------------GACAAA----A-TG-AG--------C-CT-------TATGGACA-AAA---TTT-GACGTATTTaacgcc
gi|42869 : TGTGGACAAA-GTCAA-AG-TATG-T-A-T----AT----T-TT-T--T-CT---G-CG---------------GACAAA----A-AG-CG--------T-CA-------AGCGAA-A-AAA---G
gi|42870 : CGGACAAAAGTCGA-CG-TTTT-T-C-TAAAAAA----A-TT-T--T-CT---A-TT---------------GATAAATCTTA-AG-AG--------T-GA-------AGCGGACA-AAA---
gi|42871 : CGGACAAAAGTCGC-CA-TTGA-A-T-T----AA----G-TT-T--T-CT---G-CG---------------GACAAA----A-TG-CG--------T-CA-------TTGGGACA-Aaacgtc
gi|42872 : CGGAAAAAAATCGA-CG-TATT-T-C-T----AA----T-AT-T--T-CT---G-CG---------------GACTAA----A-AG-CG--------TACA-------AAGGGACA-AAA---
gi|42873 : CGGACAGAAGTGTT-CA-TTGT-C-C-T----AA----A-TT-T--TTCT---G-CA---------------GACAAA----A-GG-CG--------T-CA-------GATAAACA-AAA---TTT-GACGagtg
gi|42874 : GGACAATGGTCGA-CG-CGTT-T---T----AA----T-TT-T--TTCT---G-CT---------------AAACAA----A-GG-CG--------T-CA-------AGCGGACA-AAA---catt
gi|42875 : GGACAGAAGTCTT-CA-TTTTAT-A-T----CA----A-TT-T--T-CT---G-CA---------------GACAAA----AAGG-CG--------A-TA-------TCCGGAAA-AAA---ATC-GACGTATTTCTAagccagtca
gi|42876 : GGACAAACGTCGA-CG-TATT-T-C-T----AA----G-TT-T--TTCT---GTCGATAAAAAGCTTTGTTGACAAA----A-AG-CG--------T-CA-------ACCGGACA-AAA---
gi|42877 : GATAAAATTTGA-CG-TGTT-T-C-T----AT----T-TT-T--T-CT---G-CG---------------GACAAA----A-TG-CG--------T-CA-------AACGGACA-AAA---agcat
gi|42878 : GACAAAAGTCGA-CG-TATT-T-C-T----AT----T-TT-T--TCCT---G-TG---------------GATAAA----A-AG-CG--------T----------TGCAAACA-AAA---agcgcc
gi|42879 : CGA-CG-TACT-T-C-T----AT----T-TT-T--T-CA---G-CG---------------GACAAA----A-AG-CG--------T-TA-------AGCAGGCA-AAA---agcgccaagcggacaaaaaatgtca
gi|42880 : -CA-TTGT-C-C-T----TA----A-TT-T--T-CT---G-CA---------------GACAAA----A-GG-CG--------A-CA-------TGTTGATA-AAA---TTT-GACGTGTTTCTAaacgcat
gi|42881 : G-TTTC-T-C-TCA--AA----TATT-T--T-CT---G-TG---------------GAGAAA----C-GG-CG--------T-CA-------TGCAAACA-AAA---GTC-GA
gi|42882 : -C-T----AA----A-TT-A--T-CT---G-CG---------------AAAAGG----A-GG-CG--------T-CA-------TTTGGACA-GAA---GTC-TTCATTTTa
gi|42883 : -C-T----AA----A-TA-T--T-CT---G-CG---------------GACAGA----A-GG-CG--------T-AA-------TGCA---A-AAA---ATA-AGCGTATTTCT
gi|42884 : -TT-T--T-CT---G-CG---------------GATAAA----A-GT-CG--------T-CA-------TGCGGATA-AAA---GTC-GACGTTTTTCTA
gi|42885 : -CG---------------GATAGA----A-GG-CG--------T-CA-------TGCGGACA-AAA---GGC-GTCATTTTTCTA
gi|42886 : -CG---------------GATAAA----A-GG-CG--------T-CA-------TGCGGACA-AAA---GTC-GACGTTTTT
gi|42887 : -CG---------------GATAGA----A-GG-CG--------T-CA-------TGCGGACA-AAA---TTC-GACGTTTTT
Alignments
lowQualScore : 0 11 1 0 0 0 2222 5555555 1 11 4 111 0 444444444444444 1111 0 0 22222222 0 2222222 0 6 0 1
lowQualScore : . .. . . . . .... ....... . .. . ... . ............... .... . . ........ . ....... . . . .
lowQualScore : 2 77 4 7 7 7 4444 5555555 4 99 1 222 6 000000000000000 4444 6 6 33333333 6 7777777 7 1 8 0
consensus : TGCGGACAAAAGTCGN-CG-TTTT-T-C-T----AA----N-TT-T--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGGACA-AAAGNC-GNCGTTTTTCTA
Reference ( family-411 ) : TGCGGACAAAAGTCGN-CG-TTTT-T-C-T----AA----N-TT-T--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGGACA-AAAGTC-GNCGTTTTTCTA
gi|42827 : TGCGGACAAAAGTCGA-CG-TTTT-T-C-T----AA----A-TT-T--T-CT---G-CG---------------GATAAA----A-GG-CG--------T-CA-------TGCGGACA-AAAGGC-GTCATTTTTCTA
gi|42828 : TGCGGACAAAAGTCGA-CG-TTTT-T-C-T----AA----A-CT-T--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGGACA-AAAGTC-GACGTTTTTCTA
gi|42829 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-T----AT----T-TT-G--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGGACA-AAAGGC-GTCATTTTTCCA
gi|42830 : TGCGGACAAAAGTCGA-CG-TTTT-T-G-T----GA----T-TT-T--T-CT---G-CG---------------GACAAA----A-AG-CG--------T-CA-------TGCGGACA-AAAGTC-GACGTTTTTCTA
gi|42831 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-C----AA----A-TT-T--T-CT---G-CG---------------GATAAA----A-GT-CG--------T-CG-------TGCGGACA-AAAGTC-GACGATTTTCT
gi|42832 : TGCGGACAAAAGTCGA-CG-ATTT-T-C-T----TT----T-TTCT--T-CT---G-CG---------------GATAAA----A-AG-CG--------T----------TGCGGACA-AAAAGC-GTCG
gi|42833 : TGCGGACAAAAGTCGA-CG-TTTT-T-C-T----AA----A-TT-T--T-CT---G-CG---------------GATAAA----A-GG-CG--------T-CA-------TACGGACA-AAAGGC-GTCATTTTTCTAagcggacaaaaagcgcat
gi|42834 : TACGGACAAAAGGCGT-CA-TTTT-T-C-T----AT----T-TT-T--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CT-------TGCGGACA-AAAGGC-GTCATTTTTCCA
gi|42835 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-C----AA----A-TT-T--T-CT---T-CG---------------GATAAA----A-GT-CG--------T-CA-------TGCGGACA-AAAGTC-GACGATTTTCT
gi|42836 : TGCGGACAAAAGTCGA-CG-TTTT-G-T-G----AT----T-TT-T--T-CT---G-CG---------------GACAAA----A-GG-AG--------T-CT-------TGCGGACA-AAAGTC-GACGTTTTTCTA
gi|42837 : TGCGGACAAAAGTCGA-CG-ATTT-T-C-T----TT----T-TT-T--T-CT---G-CG---------------GATAAA----A-AG-CG--------T----------TGCGGACA-AAAG-C-GT
gi|42838 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-T----AA----A-TT-T--T-CT---G-CA---------------GACAAA----A-GG-CG--------T-CA-------TGCGGATA-AAAGGC-GTCATTTTTCTAa
gi|42839 : TGCGGACAAAAGTCGA-CG-TTTT-T-C-T----AA----A-TT-T--TTCT---G-CG---------------GATAAA----A-AG-CG--------T-CA-------TGCGGACA-AAAGGC-GTCATTTTTCTA
gi|42840 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-T----AA----A-TT-T--T-CT---G-CG---------------GACACA----A-TG-CG--------T-CA-------TGCGGACA-AAAGGC-GTCATTTTTCTA
gi|42841 : TGCGGACAAAAGTCGA-CG-TTTT-T-A-T----GA----T-TT-T--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGGACA-AAAGGC-GTCATTTTTCTA
gi|42842 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-T----AT----T-TT-T--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGGACA-AAAGGC-GTCATTTTTCCA
gi|42843 : TGCGGACAAAAGTCGGACG-TTTT-T-C-T----AA----T-TT-T--T-TT---G-AG---------------GATAAA----A-GG-CG--------T-CA-------TGCGGACA-AAAAGC-GTCATTTTTCT
gi|42844 : TGCGGACAAAAAGCGT-CA-TTTT-T-C-T----TT----T-TT-T--TTCT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGGACA-AAAAGC-GTCATTTTTCT
gi|42845 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-C----AA----A-TT-T--T-CT---G-CG---------------GGCAAA----A-GT-CG--------T-CA-------TGCGGACA-AAAGTC-GACGATTTTCT
gi|42846 : TGCGGATAAAAGGCGT-CA-TTTT-T-C-T----AA----C-TT-T--T-CT---G-CG---------------GATAAA----A-GG-CG--------T-TA-------TGCGGACA-AAAGTCGGACGTTTTTCTA
gi|42847 : TGCGGACAAAAAGCGT-CA-TTTT-T-C-T----GA----A-TT-T--T-CT---G-CG---------------GATAAA----A-GG-CG--------T-CG-------TGCGGACA-AAAGTT-GACGTTTTTTT
gi|42848 : TGCGGACAAAAGTTGA-CGTTTTT-T-T-T----GT----T-TT-T--T-CT---G-CG---------------GATAAA----A-AG-CG--------T-C---------GCGGACA-AAAAGC-GTCAT
gi|42849 : TGCGGACAAAAGTCGA-CG-ATTT-T-C-T----TT----T-TT-T--T-CT---G-CG---------------GATAAA----A-CG-CG--------T----------TGCGGACA-AAAAGC-GT
gi|42850 : TGCGGACAAAAGGCGT-CG-TTTT-T-C-T----AA----A-CT-T--T-CC---G-CG---------------GATAAA----A-GG-CG--------T-CA-------TGTGGACA-AAAGGC-GTCATTTTTCTAa
gi|42851 : TGCAGACAAAAGGCGC-AA-TTTT-T-C-C----AA----A-TT-T--T-CT---G-CG---------------GATAAA----A-GT-CG--------T-CA-------TGAGGACA-AAAGTC-GACGTTTTT
gi|42852 : TGAGGACAAAAGTCGA-CG-TTTT-T-TAT----AT----T-TT-T--T-CT---G-CG---------------GATAAA----A-AG-CG--------T-CGC------TGTGGACA-AAAAGC-GT
gi|42853 : TGTGGACAAAAGGCGT-CA-TTTT-T-C-T----AT----T-TTCT--T-CT---G-CA---------------GACAAA----A-GG-CGCAATTTTTC-CAAATTTTCTGCGGATA-AAAGTC-GTCATa
gi|42854 : TGCGGACAAAAGTCGA-CGTTTTT-T-C-T----GATTTTT-TT-T--T-TT---G-CG---------------GACAAA----A-GG-CG--------T-CG-------T
gi|42854 : TGCGGACAAAAGGCGT-CG-TTTT-T-C-T----Attttcta
gi|42855 : tgcggacaaaagtcgacgttttttctgattttttttttTGCGGACAAAATTCGA-CG-TTTT-TTC-T----GA----T-TT-T--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TACGGACA-AAAGAC-GTCATTTTT
gi|42856 : TGCGAACAAAAGGCGT-GA-TTTT-T-C-C----AA----A-TT-T--T-CT---T-CG---------------GATAAA----A-GT-CG--------T-CA-------TGCGGACA-AAAGTC-GACGTTTTTCTA
gi|42857 : TGCGGACAAAAGTCGA-CG-TTTT-T-C-T----AT----T-TT-T--T-CT---G-TG---------------GATAAA----A-AG-CG--------T----------TGCGGACA-AAA
gi|42858 : TACGGACAAAAGACGT-CA-TTTT-T-G---------------------------G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGAACA-AAAGGC-GTGATTTTTCCAagtgtca
gi|42859 : TGCGGATAAAAGTCGA-CG-TTTT-T-C-T-----A----T-TT-T--T-TT---G-CA---------------GATAAA----A-AG-CG--------T----------TGCAGACA-AAAAGC-GT
gi|42860 : TGCGGACAAAGGCCGG-CG-TATT-T-C-G----AT----T-TT-TGTT-CT---G-CG---------------GACAAA----A-AG-CG--------T-CA-------T-CGGATATAAAG-C-GTa
gi|42861 : TGCGGACAAAAGCCGG-CG-TATT-T-C-G----AT----T-TT-TGTT-CT---G-CG---------------GACAAA----A-AAACG--------T-AA-------TGCGGACA-AAGGCC-GGCGTATTTCa
gi|42862 : TGCGGACAAAAGTCCA-CG-TGTT-T-C-T----AT----T-TT-T--T-CT---G-TC---------------GA-AAA----A-AG-CG--------T----------TGCGGACA-AAA
gi|42863 : TGCGGAAGAAAGTCTT-CA-TTTT-T-T-T----AC----A-TT-T--T-CTTTTG-TG---------------GACAAA----A-GA-GG--------T-CA-------TGTGGCCA-AAGG-C-GACGTTTTTTTAaatgtca
gi|42864 : TGTGGCCAAAGG-CGA-CG-TTTT-T-T-T----A----------------------CG---------------GACGAA----A-AG-GG--------T-CA-------AGCGGACA-AAA
gi|42865 : TGTGGACAAAAGTCTT-CA-TTGT-C-C-T----AA----A-TT-C--T-CT---A-CA---------------GACATA----A-GG-CG--------T-CA-------TGTTGATA-AAATAT-GACGTATTTCTAagcgt
gi|42866 : TGCGGACAAAAGTTGA-CG-TATT-T-C-T-----A----T-TT-T--T-CT---G-TG---------------GACAAA----A-AG-CG--------T----------TGCGGGCA-AAA
gi|42867 : T---G-CG---------------GACAGA----A-GG-CG--------T-AA-------TGCA---A-AAAATA-AGCGTATTTCTAtgcgttaggcagacaaaatgtgccgtca
gi|42867 : AAAAATAAG-CG-TATT-T-C-T----AT----T-TT-T--T-TT---G-CG----------------ACAAA----A-AG-CG--------T-CA-------AGCGAACA-AAAAAC-GCttttttttgcgacaaaaagcgtcaagcgaacaaaaaacgcc
gi|42868 : tgcggacagaaggcgtaatgcaTGCGGACAGAAGTCTT-CA-TTGT-T-C-T----AA----A-TA-T--T-TT---A-CG---------------GACAAA----A-TG-AG--------C-CT-------TATGGACA-AAATTT-GACGTATTT
gi|42869 : TGTGGACAAA-GTCAA-AG-TATG-T-A-T----AT----T-TT-T--T-CT---G-CG---------------GACAAA----A-AG-CG--------T-CA-------AGCGAA-A-AAAG
gi|42870 : CGGACAAAAGTCGA-CG-TTTT-T-C-TAAAAAA----A-TT-T--T-CT---A-TT---------------GATAAATCTTA-AG-AG--------T-GA-------AGCGGACA-AAAAAC-GT
gi|42871 : CGGACAAAAGTCGC-CA-TTGA-A-T-T----AA----G-TT-T--T-CT---G-CG---------------GACAAA----A-TG-CG--------T-CA-------TTGGGACA-A
gi|42872 : CGGAAAAAAATCGA-CG-TATT-T-C-T----AA----T-AT-T--T-CT---G-CG---------------GACTAA----A-AG-CG--------TACA-------AAGGGACA-AAA
gi|42873 : CGGACAGAAGTGTT-CA-TTGT-C-C-T----AA----A-TT-T--TTCT---G-CA---------------GACAAA----A-GG-CG--------T-CA-------GATAAACA-AAATTT-GACGagtg
gi|42874 : GGACAATGGTCGA-CG-CGTT-T---T----AA----T-TT-T--TTCT---G-CT---------------AAACAA----A-GG-CG--------T-CA-------AGCGGACA-AAAcatt
gi|42875 : GGACAGAAGTCTT-CA-TTTTAT-A-T----CA----A-TT-T--T-CT---G-CA---------------GACAAA----AAGG-CG--------A-TA-------TCCGGAAA-AAAATC-GACGTATTTCTAagccagtca
gi|42876 : GGACAAACGTCGA-CG-TATT-T-C-T----AA----G-TT-T--TTCT---GTCGATAAAAAGCTTTGTTGACAAA----A-AG-CG--------T-CA-------ACCGGACA-AAA
gi|42877 : GATAAAATTTGA-CG-TGTT-T-C-T----AT----T-TT-T--T-CT---G-CG---------------GACAAA----A-TG-CG--------T-CA-------AACGGACA-AAAAGC-GCagcat
gi|42878 : GACAAAAGTCGA-CG-TATT-T-C-T----AT----T-TT-T--TCCT---G-TG---------------GATAAA----A-AG-CG--------T----------TGCAAACA-AAAAGC-GC
gi|42879 : CGA-CG-TACT-T-C-T----AT----T-TT-T--T-CA---G-CG---------------GACAAA----A-AG-CG--------T-TA-------AGCAGGCA-AAAaagcggacaaaaaatgtca
gi|42880 : -CA-TTGT-C-C-T----TA----A-TT-T--T-CT---G-CA---------------GACAAA----A-GG-CG--------A-CA-------TGTTGATA-AAATTT-GACGTGTTTCTAaacgcat
gi|42881 : G-TTTC-T-C-TCA--AA----TATT-T--T-CT---G-TG---------------GAGAAA----C-GG-CG--------T-CA-------TGCAAACA-AAAGTC-GA
gi|42882 : -C-T----AA----A-TT-A--T-CT---G-CG---------------AAAAGG----A-GG-CG--------T-CA-------TTTGGACA-GAAGTC-TTCATTTTa
gi|42883 : -C-T----AA----A-TA-T--T-CT---G-CG---------------GACAGA----A-GG-CG--------T-AA-------TGCA---A-AAAATA-AGCGTATTTCT
gi|42884 : -TT-T--T-CT---G-CG---------------GATAAA----A-GT-CG--------T-CA-------TGCGGATA-AAAGTC-GACGTTTTTCTA
gi|42885 : -CG---------------GATAGA----A-GG-CG--------T-CA-------TGCGGACA-AAAGGC-GTCATTTTTCTA
gi|42886 : -CG---------------GATAAA----A-GG-CG--------T-CA-------TGCGGACA-AAAGTC-GACGTTTTT
gi|42887 : -CG---------------GATAGA----A-GG-CG--------T-CA-------TGCGGACA-AAATTC-GACGTTTTT
Alignments
lowQualScore : 11 1 0 0 0 2222 4444 1 11 3 111 1111 0 0 22222222 0 2222222 1 0 1
lowQualScore : .. . . . . .... .... . .. . ... .... . . ........ . ....... . . .
lowQualScore : 77 5 7 7 7 5555 7777 4 99 4 222 4444 6 6 33333333 6 7777777 7 7 0
consensus : TGCGGACAAAAGTCGN-CG-TTTT-T-C-T----AA-N-TT-T--T-CT---GCGGACAAA----A-GG-CG--------T-CA-------TGCGGACAAAAGGC-GNCGTTTTTCTA
Reference ( family-411 ) : TGCGGACAAAAGTCGN-CG-TTTT-T-C-T----AA-N-TT-T--T-CT---GCGGACAAA----A-GG-CG--------T-CA-------TGCGGACAAAAGNC-GNCGTTTTTCTA
gi|42827 : TGCGGACAAAAGTCGA-CG-TTTT-T-C-T----AA-A-TT-T--T-CT---GCGGATAAA----A-GG-CG--------T-CA-------TGCGGACAAAAGGC-GTCATTTTTCTA
gi|42828 : TGCGGACAAAAGTCGA-CG-TTTT-T-C-T----AA-A-CT-T--T-CT---GCGGACAAA----A-GG-CG--------T-CA-------TGCGGACAAAAGTC-GACGTTTTTCTA
gi|42829 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-T----AT-T-TT-G--T-CT---GCGGACAAA----A-GG-CG--------T-CA-------TGCGGACAAAAGGC-GTCATTTTTCCA
gi|42830 : TGCGGACAAAAGTCGA-CG-TTTT-T-G-T----GA-T-TT-T--T-CT---GCGGACAAA----A-AG-CG--------T-CA-------TGCGGACAAAAGTC-GACGTTTTTCTA
gi|42831 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-C----AA-A-TT-T--T-CT---GCGGATAAA----A-GT-CG--------T-CG-------TGCGGACAAAAGTC-GACGATTTTCT
gi|42832 : TGCGGACAAAAGTCGA-CG-ATTT-T-C-T----TT-T-TTCT--T-CT---GCGGATAAA----A-AG-CG--------T----------TGCGGACAAAAAGC-GTCG
gi|42833 : TGCGGACAAAAGTCGA-CG-TTTT-T-C-T----AA-A-TT-T--T-CT---GCGGATAAA----A-GG-CG--------T-CA-------TACGGACAAAAGGC-GTCATTTTTCTAagcggacaaaaagcgcat
gi|42834 : TACGGACAAAAGGCGT-CA-TTTT-T-C-T----AT-T-TT-T--T-CT---GCGGACAAA----A-GG-CG--------T-CT-------TGCGGACAAAAGGC-GTCATTTTTCCA
gi|42835 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-C----AA-A-TT-T--T-CT---TCGGATAAA----A-GT-CG--------T-CA-------TGCGGACAAAAGTC-GACGATTTTCT
gi|42836 : TGCGGACAAAAGTCGA-CG-TTTT-G-T-G----AT-T-TT-T--T-CT---GCGGACAAA----A-GG-AG--------T-CT-------TGCGGACAAAAGTC-GACGTTTTTCTA
gi|42837 : TGCGGACAAAAGTCGA-CG-ATTT-T-C-T----TT-T-TT-T--T-CT---GCGGATAAA----A-AG-CG--------T----------TGCGGACAAAAG-C-GT
gi|42838 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-T----AA-A-TT-T--T-CT---GCAGACAAA----A-GG-CG--------T-CA-------TGCGGATAAAAGGC-GTCATTTTTCTAa
gi|42839 : TGCGGACAAAAGTCGA-CG-TTTT-T-C-T----AA-A-TT-T--TTCT---GCGGATAAA----A-AG-CG--------T-CA-------TGCGGACAAAAGGC-GTCATTTTTCTA
gi|42840 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-T----AA-A-TT-T--T-CT---GCGGACACA----A-TG-CG--------T-CA-------TGCGGACAAAAGGC-GTCATTTTTCTA
gi|42841 : TGCGGACAAAAGTCGA-CG-TTTT-T-A-T----GA-T-TT-T--T-CT---GCGGACAAA----A-GG-CG--------T-CA-------TGCGGACAAAAGGC-GTCATTTTTCTA
gi|42842 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-T----AT-T-TT-T--T-CT---GCGGACAAA----A-GG-CG--------T-CA-------TGCGGACAAAAGGC-GTCATTTTTCCA
gi|42843 : TGCGGACAAAAGTCGGACG-TTTT-T-C-T----AA-T-TT-T--T-TT---GAGGATAAA----A-GG-CG--------T-CA-------TGCGGACAAAAAGC-GTCATTTTTCT
gi|42844 : TGCGGACAAAAAGCGT-CA-TTTT-T-C-T----TT-T-TT-T--TTCT---GCGGACAAA----A-GG-CG--------T-CA-------TGCGGACAAAAAGC-GTCATTTTTCT
gi|42845 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-C----AA-A-TT-T--T-CT---GCGGGCAAA----A-GT-CG--------T-CA-------TGCGGACAAAAGTC-GACGATTTTCT
gi|42846 : TGCGGATAAAAGGCGT-CA-TTTT-T-C-T----AA-C-TT-T--T-CT---GCGGATAAA----A-GG-CG--------T-TA-------TGCGGACAAAAGTCGGACGTTTTTCTA
gi|42847 : TGCGGACAAAAAGCGT-CA-TTTT-T-C-T----GA-A-TT-T--T-CT---GCGGATAAA----A-GG-CG--------T-CG-------TGCGGACAAAAGTT-GACGTTTTTTT
gi|42848 : TGCGGACAAAAGTTGA-CGTTTTT-T-T-T----GT-T-TT-T--T-CT---GCGGATAAA----A-AG-CG--------T-C---------GCGGACAAAAAGC-GTCAT
gi|42849 : TGCGGACAAAAGTCGA-CG-ATTT-T-C-T----TT-T-TT-T--T-CT---GCGGATAAA----A-CG-CG--------T----------TGCGGACAAAAAGC-GT
gi|42850 : TGCGGACAAAAGGCGT-CG-TTTT-T-C-T----AA-A-CT-T--T-CC---GCGGATAAA----A-GG-CG--------T-CA-------TGTGGACAAAAGGC-GTCATTTTTCTAa
gi|42851 : TGCAGACAAAAGGCGC-AA-TTTT-T-C-C----AA-A-TT-T--T-CT---GCGGATAAA----A-GT-CG--------T-CA-------TGAGGACAAAAGTC-GACGTTTTT
gi|42852 : TGAGGACAAAAGTCGA-CG-TTTT-T-TAT----AT-T-TT-T--T-CT---GCGGATAAA----A-AG-CG--------T-CGC------TGTGGACAAAAAGC-GT
gi|42853 : TGTGGACAAAAGGCGT-CA-TTTT-T-C-T----AT-T-TTCT--T-CT---GCAGACAAA----A-GG-CGCAATTTTTC-CAAATTTTCTGCGGATAAAAGTC-GTCATa
gi|42854 : TGCGGACAAAAGTCGA-CGTTTTT-T-C-T----GA-T-TT-T--T-TT-------------------------------T-TT-------TGCGGACAAAAGGC-GTCGTTTTTCTA
gi|42855 : TGCGGACAAAATTCGA-CG-TTTT-TTC-T----GA-T-TT-T--T-CT---GCGGACAAA----A-GG-CG--------T-CA-------TACGGACAAAAGAC-GTCATTTTT
gi|42856 : TGCGAACAAAAGGCGT-GA-TTTT-T-C-C----AA-A-TT-T--T-CT---TCGGATAAA----A-GT-CG--------T-CA-------TGCGGACAAAAGTC-GACGTTTTTCTA
gi|42857 : TGCGGACAAAAGTCGA-CG-TTTT-T-C-T----AT-T-TT-T--T-CT---GTGGATAAA----A-AG-CG--------T----------TGCGGACAAAAAGT-GT
gi|42858 : TACGGACAAAAGACGT-CA-TTTT-T-G------------------------GCGGACAAA----A-GG-CG--------T-CA-------TGCGAACAAAAGGC-GTGATTTTTCCAa
gi|42859 : TGCGGATAAAAGTCGA-CG-TTTT-T-C-T-----A-T-TT-T--T-TT---GCAGATAAA----A-AG-CG--------T----------TGCAGACAAAAAGC-GT
gi|42860 : TGCGGACAAAGGCCGG-CG-TATT-T-C-G----AT-T-TT-TGTT-CT---GCGGACAAA----A-AG-CG--------T-CA-------T-CGGATATAAAGC-GTa
gi|42861 : TGCGGACAAAAGCCGG-CG-TATT-T-C-G----AT-T-TT-TGTT-CT---GCGGACAAA----A-AAACG--------T-AA-------TGCGGACAAAGGCC-GGCGTATTTCa
gi|42862 : TGCGGACAAAAGTCCA-CG-TGTT-T-C-T----AT-T-TT-T--T-CT---GTCGA-AAA----A-AG-CG--------T----------TGCGGACAAAAAAT-GT
gi|42863 : TGCGGAAGAAAGTCTT-CA-TTTT-T-T-T----AC-A-TT-T--T-CTTTTGTGGACAAA----A-GA-GG--------T-CA-------TGTGG-CCAAAGGC-GACGTTTTTTTAa
gi|42864 : TGTGGCCAAAGG-CGA-CG-TTTT-T-T-T----A------------------CGGACGAA----A-AG-GG--------T-CA-------AGCGGACAAAAAGC-G
gi|42865 : TGTGGACAAAAGTCTT-CA-TTGT-C-C-T----AA-A-TT-C--T-CT---ACAGACATA----A-GG-CG--------T-CA-------TGTTGATAAAATAT-GACGTATTTCTAt
gi|42866 : TGCGGACAAAAGTTGA-CG-TATT-T-C-T-----A-T-TT-T--T-CT---GTGGACAAA----A-AG-CG--------T----------TGCGGGCAAAATGC-G
gi|42867 : T---GCGGACAGA----A-GG-CG--------T-AA-------TGCA---AAAAATA-AGCGTATTTCTAttaggcagacaaaatgtgccgtca
gi|42867 : AAAAATAAG-CG-TATT-T-C-T----AT-T-TT-T--T-TT---GCG-ACAAA----A-AG-CG--------T-CA-------AGCGAACAAAAAAC-GCttttttttgcgacaaaaagcgtcaagcgaacaaaaaacgcc
gi|42868 : tgcggacagaaggcgtaatgcaTGCGGACAGAAGTCTT-CA-TTGT-T-C-T----AA-A-TA-T--T-TT---ACGGACAAA----A-TG-AG--------C-CT-------TATGGACAAAATTT-GACGTATTT
gi|42869 : TGTGGACAAA-GTCAA-AG-TATG-T-A-T----AT-T-TT-T--T-CT---GCGGACAAA----A-AG-CG--------T-CA-------AGCGAA-AAAAG
gi|42870 : CGGACAAAAGTCGA-CG-TTTT-T-C-TAAAAAA-A-TT-T--T-CT---ATTGATAAATCTTA-AG-AG--------T-GA-------AGCGGACAAAAAAC-GT
gi|42871 : CGGACAAAAGTCGC-CA-TTGA-A-T-T----AA-G-TT-T--T-CT---GCGGACAAA----A-TG-CG--------T-CA-------TTGGGACAA
gi|42872 : CGGAAAAAAATCGA-CG-TATT-T-C-T----AA-T-AT-T--T-CT---GCGGACTAA----A-AG-CG--------TACA-------AAGGGACAAAA
gi|42873 : CGGACAGAAGTGTT-CA-TTGT-C-C-T----AA-A-TT-T--TTCT---GCAGACAAA----A-GG-CG--------T-CA-------GATAAACAAAATTT-GACGagtg
gi|42874 : GGACAATGGTCGA-CG-CGTT-T---T----AA-T-TT-T--TTCT---GCTAAACAA----A-GG-CG--------T-CA-------AGCGGACAAAAAGC-catt
gi|42875 : GGACAGAAGTCTT-CA-TTTTAT-A-T----CA-A-TT-T--T-CT---GCAGACAAA----AAGG-CG--------A-TA-------TCCGGAAAAAAATC-GACGTATTTCTAcagtca
gi|42876 : GGACAAACGTCGA-CG-TATT-T-C-T----AAGT-TT-T--T-CT---GTCGATAAA----A-AG-CT--------T----------TGTTGACAAAAAGC-GT
gi|42877 : GATAAAATTTGA-CG-TGTT-T-C-T----AT-T-TT-T--T-CT---GCGGACAAA----A-TG-CG--------T-CA-------AACGGACAAAAAGC-GCaaccggacaaaaagcat
gi|42878 : GACAAAAGTCGA-CG-TATT-T-C-T----AT-T-TT-T--TCCT---GTGGATAAA----A-AG-CG--------T----------TGCAAACAAAAAGC-GC
gi|42879 : CGA-CG-TACT-T-C-T----AT-T-TT-T--T-CA---GCGGACAAA----A-AG-CG--------T-TA-------AGCAGGCAAAAAAC-Gaagcggacaaaaaatgtca
gi|42880 : -CA-TTGT-C-C-T----TA-A-TT-T--T-CT---GCAGACAAA----A-GG-CG--------A-CA-------TGTTGATAAAATTT-GACGTGTTTCTAcat
gi|42881 : G-TTTC-T-C-TCA--AA-TATT-T--T-CT---GTGGAGAAA----C-GG-CG--------T-CA-------TGCAAACAAAAGTC-GA
gi|42882 : -C-T----AA-A-TT-A--T-CT---GCGAAAAGG----A-GG-CG--------T-CA-------TTTGGACAGAAGTC-TTCATTTTa
gi|42883 : -C-T----AA-A-TA-T--T-CT---GCGGACAGA----A-GG-CG--------T-AA-------TGCA---AAAAATA-AGCGTATTTCT
gi|42884 : -TT-T--T-CT---GCGGATAAA----A-GT-CG--------T-CA-------TGCGGATAAAAGTC-GACGTTTTTCTA
gi|42885 : CGGATAGA----A-GG-CG--------T-CA-------TGCGGACAAAAGGC-GTCATTTTTCTA
gi|42886 : CGGATAAA----A-GG-CG--------T-CA-------TGCGGACAAAAGTC-GACGTTTTT
gi|42887 : CGGATAGA----A-GG-CG--------T-CA-------TGCGGACAAAATTC-GACGTTTTT
Alignments
lowQualScore : 0 11 1 0 0 0 2222 4444 1 11 3 111 1111 0 0 22222222 0 2222222 1 1 0 1
lowQualScore : . .. . . . . .... .... . .. . ... .... . . ........ . ....... . . . .
lowQualScore : 2 77 4 7 7 7 4444 5555 4 99 4 222 3333 6 6 33333333 6 7777777 3 8 7 5
consensus : TGCGGACAAAAGTCGN-CG-TTTT-T-C-T----AA-N-TT-T--T-CT---GCGGACAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAGGC-GTCGTTTTTCTA
Reference ( family-411 ) : TGCGGACAAAAGTCGN-CG-TTTT-T-C-T----AA-N-TT-T--T-CT---GCGGACAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAGGC-GNCGTTTTTCTA
gi|42827 : TGCGGACAAAAGTCGA-CG-TTTT-T-C-T----AA-A-TT-T--T-CT---GCGGATAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAGGC-GTCATTTTTCTA
gi|42828 : TGCGGACAAAAGTCGA-CG-TTTT-T-C-T----AA-A-CT-T--T-CT---GCGGACAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAGTC-GACGTTTTTCTA
gi|42829 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-T----AT-T-TT-G--T-CT---GCGGACAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAGGC-GTCATTTTTCCA
gi|42830 : TGCGGACAAAAGTCGA-CG-TTTT-T-G-T----GA-T-TT-T--T-CT---GCGGACAAA----A-AG-CG--------T-CA-------TGCGGACAA-AAGTC-GACGTTTTTCTA
gi|42831 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-C----AA-A-TT-T--T-CT---GCGGATAAA----A-GT-CG--------T-CG-------TGCGGACAA-AAGTC-GACGATTTTCT
gi|42832 : TGCGGACAAAAGTCGA-CG-ATTT-T-C-T----TT-T-TTCT--T-CT---GCGGATAAA----A-AG-CG--------T----------TGCGGACAA-AAAGC-GTCG
gi|42833 : TGCGGACAAAAGTCGA-CG-TTTT-T-C-T----AA-A-TT-T--T-CT---GCGGATAAA----A-GG-CG--------T-CA-------TACGGACAA-AAGGC-GTCATTTTTCTAagcggacaaaaagcgcat
gi|42834 : TACGGACAAAAGGCGT-CA-TTTT-T-C-T----AT-T-TT-T--T-CT---GCGGACAAA----A-GG-CG--------T-CT-------TGCGGACAA-AAGGC-GTCATTTTTCCA
gi|42835 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-C----AA-A-TT-T--T-CT---TCGGATAAA----A-GT-CG--------T-CA-------TGCGGACAA-AAGTC-GACGATTTTCT
gi|42836 : TGCGGACAAAAGTCGA-CG-TTTT-G-T-G----AT-T-TT-T--T-CT---GCGGACAAA----A-GG-AG--------T-CT-------TGCGGACAA-AAGTC-GACGTTTTTCTA
gi|42837 : TGCGGACAAAAGTCGA-CG-ATTT-T-C-T----TT-T-TT-T--T-CT---GCGGATAAA----A-AG-CG--------T----------TGCGGACAA-AA-GC-GT
gi|42838 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-T----AA-A-TT-T--T-CT---GCAGACAAA----A-GG-CG--------T-CA-------TGCGGATAA-AAGGC-GTCATTTTTCTAa
gi|42839 : TGCGGACAAAAGTCGA-CG-TTTT-T-C-T----AA-A-TT-T--TTCT---GCGGATAAA----A-AG-CG--------T-CA-------TGCGGACAA-AAGGC-GTCATTTTTCTA
gi|42840 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-T----AA-A-TT-T--T-CT---GCGGACACA----A-TG-CG--------T-CA-------TGCGGACAA-AAGGC-GTCATTTTTCTA
gi|42841 : TGCGGACAAAAGTCGA-CG-TTTT-T-A-T----GA-T-TT-T--T-CT---GCGGACAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAGGC-GTCATTTTTCTA
gi|42842 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-T----AT-T-TT-T--T-CT---GCGGACAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAGGC-GTCATTTTTCCA
gi|42843 : TGCGGACAAAAGTCGGACG-TTTT-T-C-T----AA-T-TT-T--T-TT---GAGGATAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAAGC-GTCATTTTTCT
gi|42844 : TGCGGACAAAAAGCGT-CA-TTTT-T-C-T----TT-T-TT-T--TTCT---GCGGACAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAAGC-GTCATTTTTCT
gi|42845 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-C----AA-A-TT-T--T-CT---GCGGGCAAA----A-GT-CG--------T-CA-------TGCGGACAA-AAGTC-GACGATTTTCT
gi|42846 : TGCGGATAAAAGGCGT-CA-TTTT-T-C-T----AA-C-TT-T--T-CT---GCGGATAAA----A-GG-CG--------T-TA-------TGCGGACAA-AAGTCGGACGTTTTTCTA
gi|42847 : TGCGGACAAAAAGCGT-CA-TTTT-T-C-T----GA-A-TT-T--T-CT---GCGGATAAA----A-GG-CG--------T-CG-------TGCGGACAA-AAGTT-GACGTTTTTTT
gi|42848 : TGCGGACAAAAGTTGA-CGTTTTT-T-T-T----GT-T-TT-T--T-CT---GCGGATAAA----A-AG-CG--------T-C---------GCGGACAA-AAAGC-GTCAT
gi|42849 : TGCGGACAAAAGTCGA-CG-ATTT-T-C-T----TT-T-TT-T--T-CT---GCGGATAAA----A-CG-CG--------T----------TGCGGACAA-AAAGC-GT
gi|42850 : TGCGGACAAAAGGCGT-CG-TTTT-T-C-T----AA-A-CT-T--T-CC---GCGGATAAA----A-GG-CG--------T-CA-------TGTGGACAA-AAGGC-GTCATTTTTCTAa
gi|42851 : TGCAGACAAAAGGCGC-AA-TTTT-T-C-C----AA-A-TT-T--T-CT---GCGGATAAA----A-GT-CG--------T-CA-------TGAGGACAA-AAGTC-GACGTTTTT
gi|42852 : TGAGGACAAAAGTCGA-CG-TTTT-T-TAT----AT-T-TT-T--T-CT---GCGGATAAA----A-AG-CG--------T-CGC------TGTGGACAA-AAAGC-GT
gi|42853 : TGTGGACAAAAGGCGT-CA-TTTT-T-C-T----AT-T-TTCT--T-CT---GCAGACAAA----A-GG-CGCAATTTTTC-CAAATTTTCTGCGGATAA-AAGTC-GTCATa
gi|42853 : TGCAGACAAAAGGCGC-AA-TTTT-T-C-C----AA-A-TT-T--T-CT---GCGGATAAA----A-GT-CG--------T-CA-------T
gi|42854 : tgtggacaaaaggcgtcatttttctattttcttcTGCGGACAAAAGTCGA-CGTTTTT-T-C-T----GA-T-TT-T--T-TT-------------------------------T-TT-------TGCGGACAA-AAGGC-GTCGTTTTTCTA
gi|42855 : TGCGGACAAAATTCGA-CG-TTTT-TTC-T----GA-T-TT-T--T-CT---GCGGACAAA----A-GG-CG--------T-CA-------TACGGACAA-AAGAC-GTCATTTTT
gi|42856 : TGCGAACAAAAGGCGT-GA-TTTT-T-C-C----AA-A-TT-T--T-CT---TCGGATAAA----A-GT-CG--------T-CA-------TGCGGACAA-AAGTC-GACGTTTTTCTA
gi|42857 : TGCGGACAAAAGTCGA-CG-TTTT-T-C-T----AT-T-TT-T--T-CT---GTGGATAAA----A-AG-CG--------T----------TGCGGACAA-AAAGT-GT
gi|42858 : TACGGACAAAAGACGT-CA-TTTT-T-G------------------------GCGGACAAA----A-GG-CG--------T-CA-------TGCGAACAA-AAGGC-GTGATTTTTCCAa
gi|42859 : TGCGGATAAAAGTCGA-CG-TTTT-T-C-T-----A-T-TT-T--T-TT---GCAGATAAA----A-AG-CG--------T----------TGCAGACAA-AAAGC-GT
gi|42860 : TGCGGACAAAGGCCGG-CG-TATT-T-C-G----AT-T-TT-TGTT-CT---GCGGACAAA----A-AG-CG--------T-CA-------T-CGGATAT-AAAGC-GTa
gi|42861 : TGCGGACAAAAGCCGG-CG-TATT-T-C-G----AT-T-TT-TGTT-CT---GCGGACAAA----A-AAACG--------T-AA-------TGCGGACAA-AGGCC-GGCGTATTTCa
gi|42862 : TGCGGACAAAAGTCCA-CG-TGTT-T-C-T----AT-T-TT-T--T-CT---GTCGA-AAA----A-AG-CG--------T----------TGCGGACAA-AAAAT-GT
gi|42863 : TGCGGAAGAAAGTCTT-CA-TTTT-T-T-T----AC-A-TT-T--T-CTTTTGTGGACAAA----A-GA-GG--------T-CA-------TGTGG-CCA-AAGGC-GACGTTTTTTTAa
gi|42864 : TGTGGCCAAAGG-CGA-CG-TTTT-T-T-T----A------------------CGGACGAA----A-AG-GG--------T-CA-------AGCGGACAA-AAAGC-G
gi|42865 : TGTGGACAAAAGTCTT-CA-TTGT-C-C-T----AA-A-TT-C--T-CT---ACAGACATA----A-GG-CG--------T-CA-------TGTTGATAA-AATAT-GACGTATTTCTAt
gi|42866 : TGCGGACAAAAGTTGA-CG-TATT-T-C-T-----A-T-TT-T--T-CT---GTGGACAAA----A-AG-CG--------T----------TGCGGGCAA-AATGC-G
gi|42867 : T---GCGGACAGA----A-GG-CG--------T-AA-------TGCAAAAAATAAG-----CGTATTTCTAttaggcagacaaaatgtgccgtca
gi|42867 : AAAAATAAG-CG-TATT-T-C-T----AT-T-TT-T--T-TT---GCG-ACAAA----A-AG-CG--------T-CA-------AGCGAACAA-AAAAC-GCttttttttgcgacaaaaagcgtcaagcgaacaaaaaacgcc
gi|42868 : tgcggacagaaggcgtaatgcaTGCGGACAGAAGTCTT-CA-TTGT-T-C-T----AA-A-TA-T--T-TT---ACGGACAAA----A-TG-AG--------C-CT-------TATGGACAA-AATTT-GACGTATTT
gi|42869 : TGTGGACAAA-GTCAA-AG-TATG-T-A-T----AT-T-TT-T--T-CT---GCGGACAAA----A-AG-CG--------T-CA-------AGCGAA-AA-AAG
gi|42870 : CGGACAAAAGTCGA-CG-TTTT-T-C-TAAAAAA-A-TT-T--T-CT---ATTGATAAATCTTA-AG-AG--------T-GA-------AGCGGACAA-AAAAC-GT
gi|42871 : CGGACAAAAGTCGC-CA-TTGA-A-T-T----AA-G-TT-T--T-CT---GCGGACAAA----A-TG-CG--------T-CA-------TTGGGACAA-
gi|42872 : CGGAAAAAAATCGA-CG-TATT-T-C-T----AA-T-AT-T--T-CT---GCGGACTAA----A-AG-CG--------TACA-------AAGGGACAA-AAAGT-G
gi|42873 : CGGACAGAAGTGTT-CA-TTGT-C-C-T----AA-A-TT-T--TTCT---GCAGACAAA----A-GG-CG--------T-CA-------GATAAACAA-AA
gi|42874 : GGACAATGGTCGA-CG-CGTT-T---T----AA-T-TT-T--TTCT---GCTAAACAA----A-GG-CG--------T-CA-------AGCGGACAA-AAAGC-tttgacgcatt
gi|42875 : GGACAGAAGTCTT-CA-TTTTAT-A-T----CA-A-TT-T--T-CT---GCAGACAAA----AAGG-CG--------A-TA-------TCCGGAAAA-AAATC-GACGTATTTCTAcagtca
gi|42876 : GGACAAACGTCGA-CG-TATT-T-C-T----AAGT-TT-T--T-CT---GTCGATAAA----A-AG-CT--------T----------TGTTGACAA-AAAGC-GT
gi|42877 : GATAAAATTTGA-CG-TGTT-T-C-T----AT-T-TT-T--T-CT---GCGGACAAA----A-TG-CG--------T-CA-------AACGGACAA-AAAGC-GCaaccggacaaaaagcat
gi|42878 : GACAAAAGTCGA-CG-TATT-T-C-T----AT-T-TT-T--TCCT---GTGGATAAA----A-AG-CG--------T----------TGCAAACAA-AAAGC-GC
gi|42879 : CGA-CG-TACT-T-C-T----AT-T-TT-T--T-CA---GCGGACAAA----A-AG-CG--------T-TA-------AGCAGGCAA-AAAAC-Gaagcggacaaaaaatgtca
gi|42880 : -CA-TTGT-C-C-T----TA-A-TT-T--T-CT---GCAGACAAA----A-GG-CG--------A-CA-------TGTTGATAA-AATTT-GACGTGTTTCTAcat
gi|42881 : G-TTTC-T-C-TCA--AA-TATT-T--T-CT---GTGGAGAAA----C-GG-CG--------T-CA-------TGCAAACAA-AAGTC-GA
gi|42882 : -C-T----AA-A-TT-A--T-CT---GCGAAAAGG----A-GG-CG--------T-CA-------TTTGGACAG-AAGTC-TTCATTTTa
gi|42883 : -C-T----AA-A-TA-T--T-CT---GCGGACAGA----A-GG-CG--------T-AA-------TGCAAAAAATAAG-----CGTATTTCT
gi|42884 : -TT-T--T-CT---GCGGATAAA----A-GT-CG--------T-CA-------TGCGGATAA-AAGTC-GACGTTTTTCTA
gi|42885 : CGGATAGA----A-GG-CG--------T-CA-------TGCGGACAA-AAGGC-GTCATTTTTCTA
gi|42886 : CGGATAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAGTC-GACGTTTTT
gi|42887 : CGGATAGA----A-GG-CG--------T-CA-------TGCGGACAA-AATTC-GACGTTTTT
Alignments
lowQualScore : 11 1 0 0 0 2222 4444 1 11 4 111 0 444444444444444 1111 0 0 22222222 0 2222222 0 0 11
lowQualScore : .. . . . . .... .... . .. . ... . ............... .... . . ........ . ....... . . ..
lowQualScore : 77 4 7 7 7 4444 5555 4 99 1 222 6 000000000000000 3333 6 6 33333333 6 7777777 6 5 44
consensus : TGCGGACAAAAGTCGN-CG-TTTT-T-C-T----AA-N-TT-T--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAGGCGT-CGTTTTTCTA
Reference ( family-411 ) : TGCGGACAAAAGTCGN-CG-TTTT-T-C-T----AA-N-TT-T--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAGGCGT-CGTTTTTCTA
gi|42827 : TGCGGACAAAAGTCGA-CG-TTTT-T-C-T----AA-A-TT-T--T-CT---G-CG---------------GATAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAGGCGT-CATTTTTCTA
gi|42828 : TGCGGACAAAAGTCGA-CG-TTTT-T-C-T----AA-A-CT-T--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAGTCGA-CGTTTTTCTA
gi|42829 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-T----AT-T-TT-G--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAGGCGT-CATTTTTCCA
gi|42830 : TGCGGACAAAAGTCGA-CG-TTTT-T-G-T----GA-T-TT-T--T-CT---G-CG---------------GACAAA----A-AG-CG--------T-CA-------TGCGGACAA-AAGTCGA-CGTTTTTCTA
gi|42831 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-C----AA-A-TT-T--T-CT---G-CG---------------GATAAA----A-GT-CG--------T-CG-------TGCGGACAA-AAGTCGA-CGATTTTCT
gi|42832 : TGCGGACAAAAGTCGA-CG-ATTT-T-C-T----TT-T-TTCT--T-CT---G-CG---------------GATAAA----A-AG-CG--------T----------TGCGGACAA-AAAGCGT-CG
gi|42833 : TGCGGACAAAAGTCGA-CG-TTTT-T-C-T----AA-A-TT-T--T-CT---G-CG---------------GATAAA----A-GG-CG--------T-CA-------TACGGACAA-AAGGCGT-CATTTTTCTAagcggacaaaaagcgcat
gi|42834 : TACGGACAAAAGGCGT-CA-TTTT-T-C-T----AT-T-TT-T--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CT-------TGCGGACAA-AAGGCGT-CATTTTTCCA
gi|42835 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-C----AA-A-TT-T--T-CT---T-CG---------------GATAAA----A-GT-CG--------T-CA-------TGCGGACAA-AAGTCGA-CGATTTTCT
gi|42836 : TGCGGACAAAAGTCGA-CG-TTTT-G-T-G----AT-T-TT-T--T-CT---G-CG---------------GACAAA----A-GG-AG--------T-CT-------TGCGGACAA-AAGTCGA-CGTTTTTCTA
gi|42837 : TGCGGACAAAAGTCGA-CG-ATTT-T-C-T----TT-T-TT-T--T-CT---G-CG---------------GATAAA----A-AG-CG--------T----------TGCGGACAA-AA-GCGT-
gi|42838 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-T----AA-A-TT-T--T-CT---G-CA---------------GACAAA----A-GG-CG--------T-CA-------TGCGGATAA-AAGGCGT-CATTTTTCTAa
gi|42839 : TGCGGACAAAAGTCGA-CG-TTTT-T-C-T----AA-A-TT-T--TTCT---G-CG---------------GATAAA----A-AG-CG--------T-CA-------TGCGGACAA-AAGGCGT-CATTTTTCTA
gi|42840 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-T----AA-A-TT-T--T-CT---G-CG---------------GACACA----A-TG-CG--------T-CA-------TGCGGACAA-AAGGCGT-CATTTTTCTA
gi|42841 : TGCGGACAAAAGTCGA-CG-TTTT-T-A-T----GA-T-TT-T--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAGGCGT-CATTTTTCTA
gi|42842 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-T----AT-T-TT-T--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAGGCGT-CATTTTTCCA
gi|42843 : TGCGGACAAAAGTCGGACG-TTTT-T-C-T----AA-T-TT-T--T-TT---G-AG---------------GATAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAAGCGT-CATTTTTCT
gi|42844 : TGCGGACAAAAAGCGT-CA-TTTT-T-C-T----TT-T-TT-T--TTCT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAAGCGT-CATTTTTCT
gi|42845 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-C----AA-A-TT-T--T-CT---G-CG---------------GGCAAA----A-GT-CG--------T-CA-------TGCGGACAA-AAGTCGA-CGATTTTCT
gi|42846 : TGCGGATAAAAGGCGT-CA-TTTT-T-C-T----AA-C-TT-T--T-CT---G-CG---------------GATAAA----A-GG-CG--------T-TA-------TGCGGACAA-AAGTCGGACGTTTTTCTA
gi|42847 : TGCGGACAAAAAGCGT-CA-TTTT-T-C-T----GA-A-TT-T--T-CT---G-CG---------------GATAAA----A-GG-CG--------T-CG-------TGCGGACAA-AAGTTGA-CGTTTTTTT
gi|42848 : TGCGGACAAAAGTTGA-CGTTTTT-T-T-T----GT-T-TT-T--T-CT---G-CG---------------GATAAA----A-AG-CG--------T-C---------GCGGACAA-AAAGCGT-CAT
gi|42849 : TGCGGACAAAAGTCGA-CG-ATTT-T-C-T----TT-T-TT-T--T-CT---G-CG---------------GATAAA----A-CG-CG--------T----------TGCGGACAA-AAAGCGT-
gi|42850 : TGCGGACAAAAGGCGT-CG-TTTT-T-C-T----AA-A-CT-T--T-CC---G-CG---------------GATAAA----A-GG-CG--------T-CA-------TGTGGACAA-AAGGCGT-CATTTTTCTAa
gi|42851 : TGCAGACAAAAGGCGC-AA-TTTT-T-C-C----AA-A-TT-T--T-CT---G-CG---------------GATAAA----A-GT-CG--------T-CA-------TGAGGACAA-AAGTCGA-CGTTTTT
gi|42852 : TGAGGACAAAAGTCGA-CG-TTTT-T-TAT----AT-T-TT-T--T-CT---G-CG---------------GATAAA----A-AG-CG--------T-CGC------TGTGGACAA-AAAGCGT-
gi|42853 : TGTGGACAAAAGGCGT-CA-TTTT-T-C-T----AT-T-TTCT--T-CT---G-CA---------------GACAAA----A-GG-CGCAATTTTTC-CAAATTTTCTGCGGATAA-AAGTCGT-CATa
gi|42854 : TGCGGACAAAAGTCGA-CGTTTTT-T-C-T----GA-T-TT-T--T-TT-----------------------------------------------T-TT-------TGCGGACAA-AAGGCGT-CGTTTTTCTA
gi|42855 : TGCGGACAAAATTCGA-CG-TTTT-TTC-T----GA-T-TT-T--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TACGGACAA-AAGACGT-CATTTTT
gi|42856 : TGCGAACAAAAGGCGT-GA-TTTT-T-C-C----AA-A-TT-T--T-CT---T-CG---------------GATAAA----A-GT-CG--------T-CA-------TGCGGACAA-AAGTCGA-CGTTTTTCTA
gi|42857 : TGCGGACAAAAGTCGA-CG-TTTT-T-C-T----AT-T-TT-T--T-CT---G-TG---------------GATAAA----A-AG-CG--------T----------TGCGGACAA-AAAGTGT-
gi|42858 : TACGGACAAAAGACGT-CA-TTTT-T-G------------------------G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGAACAA-AAGGCGT-GATTTTTCCAa
gi|42859 : TGCGGATAAAAGTCGA-CG-TTTT-T-C-T-----A-T-TT-T--T-TT---G-CA---------------GATAAA----A-AG-CG--------T----------TGCAGACAA-AAAGCGT-
gi|42860 : TGCGGACAAAGGCCGG-CG-TATT-T-C-G----AT-T-TT-TGTT-CT---G-CG---------------GACAAA----A-AG-CG--------T-CA-------T-CGGATAT-AAAGCGT-a
gi|42861 : TGCGGACAAAAGCCGG-CG-TATT-T-C-G----AT-T-TT-TGTT-CT---G-CG---------------GACAAA----A-AAACG--------T-AA-------TGCGGACAA-AGGCCGG-CGTATTTCa
gi|42862 : TGCGGACAAAAGTCCA-CG-TGTT-T-C-T----AT-T-TT-T--T-CT---G-TC---------------GA-AAA----A-AG-CG--------T----------TGCGGACAA-AAAATGT-
gi|42863 : TGCGGAAGAAAGTCTT-CA-TTTT-T-T-T----AC-A-TT-T--T-CTTTTG-TG---------------GACAAA----A-GA-GG--------T-CA-------TGTGG-CCA-AAGGCGA-CGTTTTTTTAa
gi|42864 : TGTGGCCAAAGG-CGA-CG-TTTT-T-T-T----A-------------------CG---------------GACGAA----A-AG-GG--------T-CA-------AGCGGACAA-AAAGCGT-
gi|42865 : TGTGGACAAAAGTCTT-CA-TTGT-C-C-T----AA-A-TT-C--T-CT---A-CA---------------GACATA----A-GG-CG--------T-CA-------TGTTGATAA-AATATGA-CGTATTTCTA
gi|42866 : TGCGGACAAAAGTTGA-CG-TATT-T-C-T-----A-T-TT-T--T-CT---G-TG---------------GACAAA----A-AG-CG--------T----------TGCGGGCAA-AATGCGT-
gi|42867 : T---G-CG---------------GACAGA----A-GG-CG--------T-AA-------TGCAAAAAATAAG-----CGTATTTCTAtaggcagacaaaatgtgccgtca
gi|42867 : AAAAATAAG-CG-TATT-T-C-T----AT-T-TT-T--T-TT---G-CG----------------ACAAA----A-AG-CG--------T-CA-------AGCGAACAA-AAAACGC-ttttttttgcgacaaaaagcgtcaagcgaacaaaaaacgcc
gi|42868 : tgcggacagaaggcgtaatgcaTGCGGACAGAAGTCTT-CA-TTGT-T-C-T----AA-A-TA-T--T-TT---A-CG---------------GACAAA----A-TG-AG--------C-CT-------TATGGACAA-AA
gi|42869 : TGTGGACAAA-GTCAA-AG-TATG-T-A-T----AT-T-TT-T--T-CT---G-CG---------------GACAAA----A-AG-CG--------T-CA-------AGCGAA-AA-AAGtttgacgtattt
gi|42870 : CGGACAAAAGTCGA-CG-TTTT-T-C-TAAAAAA-A-TT-T--T-CT---A-TT---------------GATAAATCTTA-AG-AG--------T-GA-------AGCGGACAA-AAAACGT-
gi|42871 : CGGACAAAAGTCGC-CA-TTGA-A-T-T----AA-G-TT-T--T-CT---G-CG---------------GACAAA----A-TG-CG--------T-CA-------TTGGGACAA-
gi|42872 : CGGAAAAAAATCGA-CG-TATT-T-C-T----AA-T-AT-T--T-CT---G-CG---------------GACTAA----A-AG-CG--------TACA-------AAGGGACAA-AAAGTG
gi|42873 : CGGACAGAAGTGTT-CA-TTGT-C-C-T----AA-A-TT-T--TTCT---G-CA---------------GACAAA----A-GG-CG--------T-CA-------GATAAACAA-AA
gi|42874 : GGACAATGGTCGA-CG-CGTT-T---T----AA-T-TT-T--TTCT---G-CT---------------AAACAA----A-GG-CG--------T-CA-------AGCGGACAA-AAAGCtttgacgcatt
gi|42875 : GGACAGAAGTCTT-CA-TTTTAT-A-T----CA-A-TT-T--T-CT---G-CA---------------GACAAA----AAGG-CG--------A-TA-------TCCGGAAAA-AAATCGA-CGTATTTCTAcagtca
gi|42876 : GGACAAACGTCGA-CG-TATT-T-C-T----AAGT-TT-T--T-CT---G-TC---------------GATAAA----A-AG-CT--------T----------TGTTGACAA-AAAGCGT-
gi|42876 : GGACAAACGTCGA-CG-TATT-T-C-T----AA-G-TT-T--TTCT---GTCGATAAAAAGCTTTGTTGACAAA----A-AG-CG--------T-CA-------ACCGGACAA-AAAGCAT-aaccggacaaaaagcat
gi|42877 : GATAAAATTTGA-CG-TGTT-T-C-T----AT-T-TT-T--T-CT---G-CG---------------GACAAA----A-TG-CG--------T-CA-------AACGGACAA-AAAGCGC-
gi|42878 : GACAAAAGTCGA-CG-TATT-T-C-T----AT-T-TT-T--TCCT---G-TG---------------GATAAA----A-AG-CG--------T----------TGCAAACAA-AAAGCGC-
gi|42879 : CGA-CG-TACT-T-C-T----AT-T-TT-T--T-CA---G-CG---------------GACAAA----A-AG-CG--------T-TA-------AGCAGGCAA-AAAACGaagcggacaaaaaatgtca
gi|42880 : -CA-TTGT-C-C-T----TA-A-TT-T--T-CT---G-CA---------------GACAAA----A-GG-CG--------A-CA-------TGTTGATAA-AATTTGA-CGTGTTTCTAcat
gi|42881 : G-TTTC-T-C-TCA--AA-TATT-T--T-CT---G-TG---------------GAGAAA----C-GG-CG--------T-CA-------TGCAAACAA-AAGTCG
gi|42882 : -C-T----AA-A-TT-A--T-CT---G-CG---------------AAAAGG----A-GG-CG--------T-CA-------TTTGGACAG-AAGTCTT-CATTTTaca
gi|42883 : -C-T----AA-A-TA-T--T-CT---G-CG---------------GACAGA----A-GG-CG--------T-AA-------TGCAAAAAA-TAAGCGT-
gi|42884 : -TT-T--T-CT---G-CG---------------GATAAA----A-GT-CG--------T-CA-------TGCGGATAA-AAGTCGA-CGTTTTTCTAatttct
gi|42885 : -CG---------------GATAGA----A-GG-CG--------T-CA-------TGCGGACAA-AAGGCGT-CATTTTTCTA
gi|42886 : -CG---------------GATAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAGTCGA-CGTTTTT
gi|42887 : -CG---------------GATAGA----A-GG-CG--------T-CA-------TGCGGACAA-AATTCGA-CGTTTTT
Alignments
lowQualScore : 11 1 0 0 0 2222 4444 1 11 4 111 0 444444444444444 1111 0 0 22222222 0 2222222 0 0 11
lowQualScore : .. . . . . .... .... . .. . ... . ............... .... . . ........ . ....... . . ..
lowQualScore : 77 4 7 7 7 4444 5555 4 99 1 222 6 000000000000000 3333 6 6 33333333 6 7777777 6 5 44
consensus : TGCGGACAAAAGTCGN-CG-TTTT-T-C-T----AA-N-TT-T--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAGGCGT-CGTTTTTCTA
Reference ( family-411 ) : TGCGGACAAAAGTCGN-CG-TTTT-T-C-T----AA-N-TT-T--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAGGCGT-CGTTTTTCTA
gi|42827 : TGCGGACAAAAGTCGA-CG-TTTT-T-C-T----AA-A-TT-T--T-CT---G-CG---------------GATAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAGGCGT-CATTTTTCTA
gi|42828 : TGCGGACAAAAGTCGA-CG-TTTT-T-C-T----AA-A-CT-T--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAGTCGA-CGTTTTTCTA
gi|42829 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-T----AT-T-TT-G--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAGGCGT-CATTTTTCCA
gi|42830 : TGCGGACAAAAGTCGA-CG-TTTT-T-G-T----GA-T-TT-T--T-CT---G-CG---------------GACAAA----A-AG-CG--------T-CA-------TGCGGACAA-AAGTCGA-CGTTTTTCTA
gi|42831 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-C----AA-A-TT-T--T-CT---G-CG---------------GATAAA----A-GT-CG--------T-CG-------TGCGGACAA-AAGTCGA-CGATTTTCT
gi|42832 : TGCGGACAAAAGTCGA-CG-ATTT-T-C-T----TT-T-TTCT--T-CT---G-CG---------------GATAAA----A-AG-CG--------T----------TGCGGACAA-AAAGCGT-CG
gi|42833 : TGCGGACAAAAGTCGA-CG-TTTT-T-C-T----AA-A-TT-T--T-CT---G-CG---------------GATAAA----A-GG-CG--------T-CA-------TACGGACAA-AAGGCGT-CATTTTTCTAagcggacaaaaagcgcat
gi|42834 : TACGGACAAAAGGCGT-CA-TTTT-T-C-T----AT-T-TT-T--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CT-------TGCGGACAA-AAGGCGT-CATTTTTCCA
gi|42835 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-C----AA-A-TT-T--T-CT---T-CG---------------GATAAA----A-GT-CG--------T-CA-------TGCGGACAA-AAGTCGA-CGATTTTCT
gi|42836 : TGCGGACAAAAGTCGA-CG-TTTT-G-T-G----AT-T-TT-T--T-CT---G-CG---------------GACAAA----A-GG-AG--------T-CT-------TGCGGACAA-AAGTCGA-CGTTTTTCTA
gi|42837 : TGCGGACAAAAGTCGA-CG-ATTT-T-C-T----TT-T-TT-T--T-CT---G-CG---------------GATAAA----A-AG-CG--------T----------TGCGGACAA-AA-GCGT-
gi|42838 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-T----AA-A-TT-T--T-CT---G-CA---------------GACAAA----A-GG-CG--------T-CA-------TGCGGATAA-AAGGCGT-CATTTTTCTAa
gi|42839 : TGCGGACAAAAGTCGA-CG-TTTT-T-C-T----AA-A-TT-T--TTCT---G-CG---------------GATAAA----A-AG-CG--------T-CA-------TGCGGACAA-AAGGCGT-CATTTTTCTA
gi|42840 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-T----AA-A-TT-T--T-CT---G-CG---------------GACACA----A-TG-CG--------T-CA-------TGCGGACAA-AAGGCGT-CATTTTTCTA
gi|42841 : TGCGGACAAAAGTCGA-CG-TTTT-T-A-T----GA-T-TT-T--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAGGCGT-CATTTTTCTA
gi|42842 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-T----AT-T-TT-T--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAGGCGT-CATTTTTCCA
gi|42843 : TGCGGACAAAAGTCGGACG-TTTT-T-C-T----AA-T-TT-T--T-TT---G-AG---------------GATAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAAGCGT-CATTTTTCT
gi|42844 : TGCGGACAAAAAGCGT-CA-TTTT-T-C-T----TT-T-TT-T--TTCT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAAGCGT-CATTTTTCT
gi|42845 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-C----AA-A-TT-T--T-CT---G-CG---------------GGCAAA----A-GT-CG--------T-CA-------TGCGGACAA-AAGTCGA-CGATTTTCT
gi|42846 : TGCGGATAAAAGGCGT-CA-TTTT-T-C-T----AA-C-TT-T--T-CT---G-CG---------------GATAAA----A-GG-CG--------T-TA-------TGCGGACAA-AAGTCGGACGTTTTTCTA
gi|42847 : TGCGGACAAAAAGCGT-CA-TTTT-T-C-T----GA-A-TT-T--T-CT---G-CG---------------GATAAA----A-GG-CG--------T-CG-------TGCGGACAA-AAGTTGA-CGTTTTTTT
gi|42848 : TGCGGACAAAAGTTGA-CGTTTTT-T-T-T----GT-T-TT-T--T-CT---G-CG---------------GATAAA----A-AG-CG--------T-C---------GCGGACAA-AAAGCGT-CAT
gi|42849 : TGCGGACAAAAGTCGA-CG-ATTT-T-C-T----TT-T-TT-T--T-CT---G-CG---------------GATAAA----A-CG-CG--------T----------TGCGGACAA-AAAGCGT-
gi|42850 : TGCGGACAAAAGGCGT-CG-TTTT-T-C-T----AA-A-CT-T--T-CC---G-CG---------------GATAAA----A-GG-CG--------T-CA-------TGTGGACAA-AAGGCGT-CATTTTTCTAa
gi|42851 : TGCAGACAAAAGGCGC-AA-TTTT-T-C-C----AA-A-TT-T--T-CT---G-CG---------------GATAAA----A-GT-CG--------T-CA-------TGAGGACAA-AAGTCGA-CGTTTTT
gi|42852 : TGAGGACAAAAGTCGA-CG-TTTT-T-TAT----AT-T-TT-T--T-CT---G-CG---------------GATAAA----A-AG-CG--------T-CGC------TGTGGACAA-AAAGCGT-
gi|42853 : TGTGGACAAAAGGCGT-CA-TTTT-T-C-T----AT-T-TTCT--T-CT---G-CA---------------GACAAA----A-GG-CGCAATTTTTC-CAAATTTTCTGCGGATAA-AAGTCGT-CATa
gi|42854 : TGCGGACAAAAGTCGA-CGTTTTT-T-C-T----GA-T-TT-T--T-TT-----------------------------------------------T-TT-------TGCGGACAA-AAGGCGT-CGTTTTTCTA
gi|42855 : TGCGGACAAAATTCGA-CG-TTTT-TTC-T----GA-T-TT-T--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TACGGACAA-AAGACGT-CATTTTT
gi|42856 : TGCGAACAAAAGGCGT-GA-TTTT-T-C-C----AA-A-TT-T--T-CT---T-CG---------------GATAAA----A-GT-CG--------T-CA-------TGCGGACAA-AAGTCGA-CGTTTTTCTA
gi|42857 : TGCGGACAAAAGTCGA-CG-TTTT-T-C-T----AT-T-TT-T--T-CT---G-TG---------------GATAAA----A-AG-CG--------T----------TGCGGACAA-AAAGTGT-
gi|42858 : TACGGACAAAAGACGT-CA-TTTT-T-G------------------------G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGAACAA-AAGGCGT-GATTTTTCCAa
gi|42859 : TGCGGATAAAAGTCGA-CG-TTTT-T-C-T-----A-T-TT-T--T-TT---G-CA---------------GATAAA----A-AG-CG--------T----------TGCAGACAA-AAAGCGT-
gi|42860 : TGCGGACAAAGGCCGG-CG-TATT-T-C-G----AT-T-TT-TGTT-CT---G-CG---------------GACAAA----A-AG-CG--------T-CA-------T-CGGATAT-AAAGCGT-a
gi|42861 : TGCGGACAAAAGCCGG-CG-TATT-T-C-G----AT-T-TT-TGTT-CT---G-CG---------------GACAAA----A-AAACG--------T-AA-------TGCGGACAA-AGGCCGG-CGTATTTCa
gi|42862 : TGCGGACAAAAGTCCA-CG-TGTT-T-C-T----AT-T-TT-T--T-CT---G-TC---------------GA-AAA----A-AG-CG--------T----------TGCGGACAA-AAAATGT-
gi|42863 : TGCGGAAGAAAGTCTT-CA-TTTT-T-T-T----AC-A-TT-T--T-CTTTTG-TG---------------GACAAA----A-GA-GG--------T-CA-------TGTGG-CCA-AAGGCGA-CGTTTTTTTAa
gi|42864 : TGTGGCCAAAGG-CGA-CG-TTTT-T-T-T----A-------------------CG---------------GACGAA----A-AG-GG--------T-CA-------AGCGGACAA-AAAGCGT-
gi|42865 : TGTGGACAAAAGTCTT-CA-TTGT-C-C-T----AA-A-TT-C--T-CT---A-CA---------------GACATA----A-GG-CG--------T-CA-------TGTTGATAA-AATATGA-CGTATTTCTA
gi|42866 : TGCGGACAAAAGTTGA-CG-TATT-T-C-T-----A-T-TT-T--T-CT---G-TG---------------GACAAA----A-AG-CG--------T----------TGCGGGCAA-AATGCGT-
gi|42867 : T---G-CG---------------GACAGA----A-GG-CG--------T-AA-------TGCAAAAAATAAG-----CGTATTTCTAtaggcagacaaaatgtgccgtca
gi|42867 : AAAAATAAG-CG-TATT-T-C-T----AT-T-TT-T--T-TT---G-CG----------------ACAAA----A-AG-CG--------T-CA-------AGCGAACAA-AAAACGC-ttttttttgcgacaaaaagcgtcaagcgaacaaaaaacgcc
gi|42868 : tgcggacagaaggcgtaatgcaTGCGGACAGAAGTCTT-CA-TTGT-T-C-T----AA-A-TA-T--T-TT---A-CG---------------GACAAA----A-TG-AG--------C-CT-------TATGGACAA-AA
gi|42869 : TGTGGACAAA-GTCAA-AG-TATG-T-A-T----AT-T-TT-T--T-CT---G-CG---------------GACAAA----A-AG-CG--------T-CA-------AGCGAA-AA-AAGtttgacgtattt
gi|42870 : CGGACAAAAGTCGA-CG-TTTT-T-C-TAAAAAA-A-TT-T--T-CT---A-TT---------------GATAAATCTTA-AG-AG--------T-GA-------AGCGGACAA-AAAACGT-
gi|42871 : CGGACAAAAGTCGC-CA-TTGA-A-T-T----AA-G-TT-T--T-CT---G-CG---------------GACAAA----A-TG-CG--------T-CA-------TTGGGACAA-
gi|42872 : CGGAAAAAAATCGA-CG-TATT-T-C-T----AA-T-AT-T--T-CT---G-CG---------------GACTAA----A-AG-CG--------TACA-------AAGGGACAA-AAAGTG
gi|42873 : CGGACAGAAGTGTT-CA-TTGT-C-C-T----AA-A-TT-T--TTCT---G-CA---------------GACAAA----A-GG-CG--------T-CA-------GATAAACAA-AA
gi|42874 : GGACAATGGTCGA-CG-CGTT-T---T----AA-T-TT-T--TTCT---G-CT---------------AAACAA----A-GG-CG--------T-CA-------AGCGGACAA-AAAGCtttgacgcatt
gi|42875 : GGACAGAAGTCTT-CA-TTTTAT-A-T----CA-A-TT-T--T-CT---G-CA---------------GACAAA----AAGG-CG--------A-TA-------TCCGGAAAA-AAATCGA-CGTATTTCTAcagtca
gi|42876 : GGACAAACGTCGA-CG-TATT-T-C-T----AAGT-TT-T--T-CT---G-TC---------------GATAAA----A-AG-CT--------T----------TGTTGACAA-AAAGCGT-
gi|42876 : GGACAAACGTCGA-CG-TATT-T-C-T----AA-G-TT-T--TTCT---GTCGATAAAAAGCTTTGTTGACAAA----A-AG-CG--------T-CA-------ACCGGACAA-AAAGCAT-aaccggacaaaaagcat
gi|42877 : GATAAAATTTGA-CG-TGTT-T-C-T----AT-T-TT-T--T-CT---G-CG---------------GACAAA----A-TG-CG--------T-CA-------AACGGACAA-AAAGCGC-
gi|42878 : GACAAAAGTCGA-CG-TATT-T-C-T----AT-T-TT-T--TCCT---G-TG---------------GATAAA----A-AG-CG--------T----------TGCAAACAA-AAAGCGC-
gi|42879 : CGA-CG-TACT-T-C-T----AT-T-TT-T--T-CA---G-CG---------------GACAAA----A-AG-CG--------T-TA-------AGCAGGCAA-AAAACGaagcggacaaaaaatgtca
gi|42880 : -CA-TTGT-C-C-T----TA-A-TT-T--T-CT---G-CA---------------GACAAA----A-GG-CG--------A-CA-------TGTTGATAA-AATTTGA-CGTGTTTCTAcat
gi|42881 : G-TTTC-T-C-TCA--AA-TATT-T--T-CT---G-TG---------------GAGAAA----C-GG-CG--------T-CA-------TGCAAACAA-AAGTCG
gi|42882 : -C-T----AA-A-TT-A--T-CT---G-CG---------------AAAAGG----A-GG-CG--------T-CA-------TTTGGACAG-AAGTCTT-CATTTTaca
gi|42883 : -C-T----AA-A-TA-T--T-CT---G-CG---------------GACAGA----A-GG-CG--------T-AA-------TGCAAAAAA-TAAGCGT-
gi|42884 : -TT-T--T-CT---G-CG---------------GATAAA----A-GT-CG--------T-CA-------TGCGGATAA-AAGTCGA-CGTTTTTCTAatttct
gi|42885 : -CG---------------GATAGA----A-GG-CG--------T-CA-------TGCGGACAA-AAGGCGT-CATTTTTCTA
gi|42886 : -CG---------------GATAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAGTCGA-CGTTTTT
gi|42887 : -CG---------------GATAGA----A-GG-CG--------T-CA-------TGCGGACAA-AATTCGA-CGTTTTT
blockSeqs : GA T AAAA AGT C GT T TTT ATAAAAAGCTTTGTT TCTT CAATTTTT AATTTTC GA
blockSeqs : A T CA ATA C GT T . . . . C A
blockSeqs : T . . AA . . T . . . . . T
blockSeqs : A . . TT . . T . . . . . A
blockSeqs : T . . AT . . T . . . . . A
blockSeqs : A . . AA . . C . . . . . T
blockSeqs : A . . TT . . . . . . . . T
blockSeqs : T . . AA . . . . . . . . T
blockSeqs : T . . TT . . . . . . . . A
blockSeqs : A . . AA . . . . . . . . A
blockSeqs : A . . TT . . . . . . . . T
blockSeqs : T . . TT . . . . . . . . T
blockSeqs : A . . AA . . . . . . . . T
blockSeqs : T . . AA . . . . . . . . T
blockSeqs : A . . AA . . . . . . . . T
blockSeqs : T . . AT . . . . . . . . T
blockSeqs : T . . TT . . . . . . . . T
blockSeqs : T . . AT . . . . . . . . T
blockSeqs : T . . TT . . . . . . . . A
blockSeqs : T . . AA . . . . . . . . A
blockSeqs : A . . AC . . . . . . . . T
blockSeqs : A . . AA . . . . . . . . T
blockSeqs : T . . TT . . . . . . . . T
blockSeqs : C . . TT . . . . . . . . A
blockSeqs : A . . AA . . . . . . . . T
blockSeqs : T . . AA . . . . . . . . T
blockSeqs : A . . TT . . . . . . . . T
blockSeqs : A . . TT . . . . . . . . T
blockSeqs : T . . AT . . . . . . . . A
blockSeqs : A . . AT . . . . . . . . T
blockSeqs : T . . AA . . . . . . . . T
blockSeqs : A . . TT . . . . . . . . T
blockSeqs : G . . AT . . . . . . . . T
blockSeqs : G . . TT . . . . . . . . G
blockSeqs : A . . TT . . . . . . . . T
blockSeqs : T . . TT . . . . . . . . A
blockSeqs : A . . CA . . . . . . . . T
blockSeqs : T . . AA . . . . . . . . A
blockSeqs : A . . AT . . . . . . . . T
blockSeqs : G . . TT . . . . . . . . C
blockSeqs : T . . AA . . . . . . . . T
blockSeqs : A . . TT . . . . . . . . A
blockSeqs : A . . AA . . . . . . . . T
blockSeqs : C . . AG . . . . . . . . T
blockSeqs : A . . AT . . . . . . . . C
blockSeqs : T . . AA . . . . . . . . C
blockSeqs : A . . AT . . . . . . . . A
blockSeqs : T . . AA . . . . . . . . T
blockSeqs : A . . AG . . . . . . . . T
blockSeqs : A . . TT . . . . . . . . A
blockSeqs : A . . TT . . . . . . . . T
blockSeqs : A . . TT . . . . . . . . A
blockSeqs : A . . AA . . . . . . . . A
blockSeqs : . . AA . . . . . . . . .
blockSeqs : . . AA . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqCons :
originalCons : TGCGGACAAAAGTCGN-CG-TTTT-T-C-T----AA-N-TT-T--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAGGCGT-CGTTTTTCTA
finalCons : TGCGGACAAAAGTCGN-CG-TTTT-T-C-T----AA-N-TT-T--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAGGCGT-CGTTTTTCTA
Alignments
lowQualScore : 11 1 0 0 0 2222 4444 1 11 4 111 0 444444444444444 1111 0 0 22222222 0 2222222 0 0 11
lowQualScore : .. . . . . .... .... . .. . ... . ............... .... . . ........ . ....... . . ..
lowQualScore : 77 4 7 7 7 4444 5555 4 99 1 222 6 000000000000000 3333 6 6 33333333 6 7777777 6 5 44
consensus : TGCGGACAAAAGTCGN-CG-TTTT-T-C-T----AA-N-TT-T--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAGGCGT-CGTTTTTCTA
Reference ( family-411 ) : TGCGGACAAAAGTCGN-CG-TTTT-T-C-T----AA-N-TT-T--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAGGCGT-CGTTTTTCTA
gi|42827 : TGCGGACAAAAGTCGA-CG-TTTT-T-C-T----AA-A-TT-T--T-CT---G-CG---------------GATAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAGGCGT-CATTTTTCTA
gi|42828 : TGCGGACAAAAGTCGA-CG-TTTT-T-C-T----AA-A-CT-T--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAGTCGA-CGTTTTTCTA
gi|42829 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-T----AT-T-TT-G--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAGGCGT-CATTTTTCCA
gi|42830 : TGCGGACAAAAGTCGA-CG-TTTT-T-G-T----GA-T-TT-T--T-CT---G-CG---------------GACAAA----A-AG-CG--------T-CA-------TGCGGACAA-AAGTCGA-CGTTTTTCTA
gi|42831 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-C----AA-A-TT-T--T-CT---G-CG---------------GATAAA----A-GT-CG--------T-CG-------TGCGGACAA-AAGTCGA-CGATTTTCT
gi|42832 : TGCGGACAAAAGTCGA-CG-ATTT-T-C-T----TT-T-TTCT--T-CT---G-CG---------------GATAAA----A-AG-CG--------T----------TGCGGACAA-AAAGCGT-CG
gi|42833 : TGCGGACAAAAGTCGA-CG-TTTT-T-C-T----AA-A-TT-T--T-CT---G-CG---------------GATAAA----A-GG-CG--------T-CA-------TACGGACAA-AAGGCGT-CATTTTTCTAagcggacaaaaagcgcat
gi|42834 : TACGGACAAAAGGCGT-CA-TTTT-T-C-T----AT-T-TT-T--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CT-------TGCGGACAA-AAGGCGT-CATTTTTCCA
gi|42835 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-C----AA-A-TT-T--T-CT---T-CG---------------GATAAA----A-GT-CG--------T-CA-------TGCGGACAA-AAGTCGA-CGATTTTCT
gi|42836 : TGCGGACAAAAGTCGA-CG-TTTT-G-T-G----AT-T-TT-T--T-CT---G-CG---------------GACAAA----A-GG-AG--------T-CT-------TGCGGACAA-AAGTCGA-CGTTTTTCTA
gi|42837 : TGCGGACAAAAGTCGA-CG-ATTT-T-C-T----TT-T-TT-T--T-CT---G-CG---------------GATAAA----A-AG-CG--------T----------TGCGGACAA-AA-GCGT-
gi|42838 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-T----AA-A-TT-T--T-CT---G-CA---------------GACAAA----A-GG-CG--------T-CA-------TGCGGATAA-AAGGCGT-CATTTTTCTAa
gi|42839 : TGCGGACAAAAGTCGA-CG-TTTT-T-C-T----AA-A-TT-T--TTCT---G-CG---------------GATAAA----A-AG-CG--------T-CA-------TGCGGACAA-AAGGCGT-CATTTTTCTA
gi|42840 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-T----AA-A-TT-T--T-CT---G-CG---------------GACACA----A-TG-CG--------T-CA-------TGCGGACAA-AAGGCGT-CATTTTTCTA
gi|42841 : TGCGGACAAAAGTCGA-CG-TTTT-T-A-T----GA-T-TT-T--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAGGCGT-CATTTTTCTA
gi|42842 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-T----AT-T-TT-T--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAGGCGT-CATTTTTCCA
gi|42843 : TGCGGACAAAAGTCGGACG-TTTT-T-C-T----AA-T-TT-T--T-TT---G-AG---------------GATAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAAGCGT-CATTTTTCT
gi|42844 : TGCGGACAAAAAGCGT-CA-TTTT-T-C-T----TT-T-TT-T--TTCT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAAGCGT-CATTTTTCT
gi|42845 : TGCGGACAAAAGGCGT-CA-TTTT-T-C-C----AA-A-TT-T--T-CT---G-CG---------------GGCAAA----A-GT-CG--------T-CA-------TGCGGACAA-AAGTCGA-CGATTTTCT
gi|42846 : TGCGGATAAAAGGCGT-CA-TTTT-T-C-T----AA-C-TT-T--T-CT---G-CG---------------GATAAA----A-GG-CG--------T-TA-------TGCGGACAA-AAGTCGGACGTTTTTCTA
gi|42847 : TGCGGACAAAAAGCGT-CA-TTTT-T-C-T----GA-A-TT-T--T-CT---G-CG---------------GATAAA----A-GG-CG--------T-CG-------TGCGGACAA-AAGTTGA-CGTTTTTTT
gi|42848 : TGCGGACAAAAGTTGA-CGTTTTT-T-T-T----GT-T-TT-T--T-CT---G-CG---------------GATAAA----A-AG-CG--------T-C---------GCGGACAA-AAAGCGT-CAT
gi|42849 : TGCGGACAAAAGTCGA-CG-ATTT-T-C-T----TT-T-TT-T--T-CT---G-CG---------------GATAAA----A-CG-CG--------T----------TGCGGACAA-AAAGCGT-
gi|42850 : TGCGGACAAAAGGCGT-CG-TTTT-T-C-T----AA-A-CT-T--T-CC---G-CG---------------GATAAA----A-GG-CG--------T-CA-------TGTGGACAA-AAGGCGT-CATTTTTCTAa
gi|42851 : TGCAGACAAAAGGCGC-AA-TTTT-T-C-C----AA-A-TT-T--T-CT---G-CG---------------GATAAA----A-GT-CG--------T-CA-------TGAGGACAA-AAGTCGA-CGTTTTT
gi|42852 : TGAGGACAAAAGTCGA-CG-TTTT-T-TAT----AT-T-TT-T--T-CT---G-CG---------------GATAAA----A-AG-CG--------T-CGC------TGTGGACAA-AAAGCGT-
gi|42853 : TGTGGACAAAAGGCGT-CA-TTTT-T-C-T----AT-T-TTCT--T-CT---G-CA---------------GACAAA----A-GG-CGCAATTTTTC-CAAATTTTCTGCGGATAA-AAGTCGT-CATa
gi|42854 : TGCGGACAAAAGTCGA-CGTTTTT-T-C-T----GA-T-TT-T--T-TT-----------------------------------------------T-TT-------TGCGGACAA-AAGGCGT-CGTTTTTCTA
gi|42855 : TGCGGACAAAATTCGA-CG-TTTT-TTC-T----GA-T-TT-T--T-CT---G-CG---------------GACAAA----A-GG-CG--------T-CA-------TACGGACAA-AAGACGT-CATTTTT
gi|42856 : TGCGAACAAAAGGCGT-GA-TTTT-T-C-C----AA-A-TT-T--T-CT---T-CG---------------GATAAA----A-GT-CG--------T-CA-------TGCGGACAA-AAGTCGA-CGTTTTTCTA
gi|42857 : TGCGGACAAAAGTCGA-CG-TTTT-T-C-T----AT-T-TT-T--T-CT---G-TG---------------GATAAA----A-AG-CG--------T----------TGCGGACAA-AAAGTGT-
gi|42858 : TACGGACAAAAGACGT-CA-TTTT-T-G------------------------G-CG---------------GACAAA----A-GG-CG--------T-CA-------TGCGAACAA-AAGGCGT-GATTTTTCCAa
gi|42859 : TGCGGATAAAAGTCGA-CG-TTTT-T-C-T-----A-T-TT-T--T-TT---G-CA---------------GATAAA----A-AG-CG--------T----------TGCAGACAA-AAAGCGT-
gi|42860 : TGCGGACAAAGGCCGG-CG-TATT-T-C-G----AT-T-TT-TGTT-CT---G-CG---------------GACAAA----A-AG-CG--------T-CA-------T-CGGATAT-AAAGCGT-a
gi|42861 : TGCGGACAAAAGCCGG-CG-TATT-T-C-G----AT-T-TT-TGTT-CT---G-CG---------------GACAAA----A-AAACG--------T-AA-------TGCGGACAA-AGGCCGG-CGTATTTCa
gi|42862 : TGCGGACAAAAGTCCA-CG-TGTT-T-C-T----AT-T-TT-T--T-CT---G-TC---------------GA-AAA----A-AG-CG--------T----------TGCGGACAA-AAAATGT-
gi|42863 : TGCGGAAGAAAGTCTT-CA-TTTT-T-T-T----AC-A-TT-T--T-CTTTTG-TG---------------GACAAA----A-GA-GG--------T-CA-------TGTGG-CCA-AAGGCGA-CGTTTTTTTAa
gi|42864 : TGTGGCCAAAGG-CGA-CG-TTTT-T-T-T----A-------------------CG---------------GACGAA----A-AG-GG--------T-CA-------AGCGGACAA-AAAGCGT-
gi|42865 : TGTGGACAAAAGTCTT-CA-TTGT-C-C-T----AA-A-TT-C--T-CT---A-CA---------------GACATA----A-GG-CG--------T-CA-------TGTTGATAA-AATATGA-CGTATTTCTA
gi|42866 : TGCGGACAAAAGTTGA-CG-TATT-T-C-T-----A-T-TT-T--T-CT---G-TG---------------GACAAA----A-AG-CG--------T----------TGCGGGCAA-AATGCGT-
gi|42867 : T---G-CG---------------GACAGA----A-GG-CG--------T-AA-------TGCAAAAAATAAG-----CGTATTTCTAtaggcagacaaaatgtgccgtca
gi|42867 : AAAAATAAG-CG-TATT-T-C-T----AT-T-TT-T--T-TT---G-CG----------------ACAAA----A-AG-CG--------T-CA-------AGCGAACAA-AAAACGC-ttttttttgcgacaaaaagcgtcaagcgaacaaaaaacgcc
gi|42868 : tgcggacagaaggcgtaatgcaTGCGGACAGAAGTCTT-CA-TTGT-T-C-T----AA-A-TA-T--T-TT---A-CG---------------GACAAA----A-TG-AG--------C-CT-------TATGGACAA-AA
gi|42869 : TGTGGACAAA-GTCAA-AG-TATG-T-A-T----AT-T-TT-T--T-CT---G-CG---------------GACAAA----A-AG-CG--------T-CA-------AGCGAA-AA-AAGtttgacgtattt
gi|42870 : CGGACAAAAGTCGA-CG-TTTT-T-C-TAAAAAA-A-TT-T--T-CT---A-TT---------------GATAAATCTTA-AG-AG--------T-GA-------AGCGGACAA-AAAACGT-
gi|42871 : CGGACAAAAGTCGC-CA-TTGA-A-T-T----AA-G-TT-T--T-CT---G-CG---------------GACAAA----A-TG-CG--------T-CA-------TTGGGACAA-
gi|42872 : CGGAAAAAAATCGA-CG-TATT-T-C-T----AA-T-AT-T--T-CT---G-CG---------------GACTAA----A-AG-CG--------TACA-------AAGGGACAA-AAAGTG
gi|42873 : CGGACAGAAGTGTT-CA-TTGT-C-C-T----AA-A-TT-T--TTCT---G-CA---------------GACAAA----A-GG-CG--------T-CA-------GATAAACAA-AA
gi|42874 : GGACAATGGTCGA-CG-CGTT-T---T----AA-T-TT-T--TTCT---G-CT---------------AAACAA----A-GG-CG--------T-CA-------AGCGGACAA-AAAGCtttgacgcatt
gi|42875 : GGACAGAAGTCTT-CA-TTTTAT-A-T----CA-A-TT-T--T-CT---G-CA---------------GACAAA----AAGG-CG--------A-TA-------TCCGGAAAA-AAATCGA-CGTATTTCTAcagtca
gi|42876 : GGACAAACGTCGA-CG-TATT-T-C-T----AAGT-TT-T--T-CT---G-TC---------------GATAAA----A-AG-CT--------T----------TGTTGACAA-AAAGCGT-
gi|42876 : GGACAAACGTCGA-CG-TATT-T-C-T----AA-G-TT-T--TTCT---GTCGATAAAAAGCTTTGTTGACAAA----A-AG-CG--------T-CA-------ACCGGACAA-AAAGCAT-aaccggacaaaaagcat
gi|42877 : GATAAAATTTGA-CG-TGTT-T-C-T----AT-T-TT-T--T-CT---G-CG---------------GACAAA----A-TG-CG--------T-CA-------AACGGACAA-AAAGCGC-
gi|42878 : GACAAAAGTCGA-CG-TATT-T-C-T----AT-T-TT-T--TCCT---G-TG---------------GATAAA----A-AG-CG--------T----------TGCAAACAA-AAAGCGC-
gi|42879 : CGA-CG-TACT-T-C-T----AT-T-TT-T--T-CA---G-CG---------------GACAAA----A-AG-CG--------T-TA-------AGCAGGCAA-AAAACGaagcggacaaaaaatgtca
gi|42880 : -CA-TTGT-C-C-T----TA-A-TT-T--T-CT---G-CA---------------GACAAA----A-GG-CG--------A-CA-------TGTTGATAA-AATTTGA-CGTGTTTCTAcat
gi|42881 : G-TTTC-T-C-TCA--AA-TATT-T--T-CT---G-TG---------------GAGAAA----C-GG-CG--------T-CA-------TGCAAACAA-AAGTCG
gi|42882 : -C-T----AA-A-TT-A--T-CT---G-CG---------------AAAAGG----A-GG-CG--------T-CA-------TTTGGACAG-AAGTCTT-CATTTTaca
gi|42883 : -C-T----AA-A-TA-T--T-CT---G-CG---------------GACAGA----A-GG-CG--------T-AA-------TGCAAAAAA-TAAGCGT-
gi|42884 : -TT-T--T-CT---G-CG---------------GATAAA----A-GT-CG--------T-CA-------TGCGGATAA-AAGTCGA-CGTTTTTCTAatttct
gi|42885 : -CG---------------GATAGA----A-GG-CG--------T-CA-------TGCGGACAA-AAGGCGT-CATTTTTCTA
gi|42886 : -CG---------------GATAAA----A-GG-CG--------T-CA-------TGCGGACAA-AAGTCGA-CGTTTTT
gi|42887 : -CG---------------GATAGA----A-GG-CG--------T-CA-------TGCGGACAA-AATTCGA-CGTTTTT