lowQualScore : 222222
lowQualScore : 0 1 777777 0 333333 11 0 0 0 11 9 1 0 5555555555 11 44444444444 11 4444444 11 0 0 22222 1 66 1 2222 2
lowQualScore : . . ...... . ...... .. . . . .. . . . .......... .. ........... .. ....... .. . . ..... . .. . .... .
lowQualScore : 1 0 666666 9 555555 22 9 9 9 22 4 2 9 4444444444 33 00000000000 11 2222222 99 9 9 33333 0 22 9 1111 4
consensus : TTCCTGATGTCGACATAATGA-AGTGGC-----TATCTG-ACTA--AC-AGG--CT-GGCAGAACTAT-GCCAC--CATA-T-GTCAC---------CATAATGAG--TGAGATGTCGA-----------CATCAT--AC------GTTCCTGATG-TCGACAT-AATGA-A-----GTGGCTATCTG-ACTAN-CAGGCT----GGCAGAACTATGCCACCAT
Reference ( gi|125673 ) : TTCCTGATATCGACATAATGA-AGTGGT-----TATCTG-ACTA--AA-TGA--CT-GGCAGAACTAT-GCCAC--CATG-T-GTTAC---------CATAATGAG--TGAGATGTCGA-----------CATCAT--AT------GTTCCTGATA-TCGACAT-AATGA-A-----GTGGCTATCTG-ACTAA-CAGACT----GACAGAACTATGCCACCAT
gi|125677 : TTCCTGATATCGACATAATGA-AGTGGC-----TATCTG-ACTA--AC-AGA--CT-GACAGAACTAT-GCCAC--CATA-T-GTTAC---------CATAATGAG--TGAGATGTCGA-----------CATCAA--AT------GTTCCTGAAA-TCGACAT-AATGA-A-----GTGGCTATCTG-ACTAA-CAGACT----GACAGAACTATGCCAACAT
gi|125675 : TTCCTGATATCGACATAATGA-AGTGGC-----TATCTG-ACTA--AC-AGA--CT-GACAGAACTAT-GCCAC--CATA-T-GTTAC---------CATAATGAG--TGAGATGTTGA-----------CAT-AT--AT------GTTCCTGATA-TCGACAT-AATGA-A-----GTGGCTATCTG-ACTAA-CAGGCT----GCCAGAATTATGCCACCAT
gi|125679 : TTCCTGATATCGACATAATGA-AGTGGC-----TATCTG-ACTA--AC-AGG--CT-GCCAGAATTAT-GCCAC--CATG-T-GTCAC---------CATAATGAG--TGAGATGTCGA-----------CATCAT--AT------GTTCCTTATA-TCGACAT-AATGA-A-----GTGGCTATCTG-ACTAA-CAGACT----GACATAACAATGCCACCAT
gi|125676 : TTCCTGAAATCGACATAATGA-AGTGGC-----TATCTG-ACTA--AC-AGA--CT-GACAGAACTAT-GCCAA--CATA-T-GTTAC---------CATAATGAG--TGAGATGTCGA-----------CAACAT--AT------GTTCCTGAAA-TCGACAT-AATGA-A-----GTGGCTATCTG-ACTAA-CAGACT----GGCAGAACTATGCCACCAT
gi|125678 : TTCCTGATATCGACATAATGA-AGTGAC-----TATCTG-ACTA--AC-AGA--CT-GACAGAACTAT-GCCAC--CATA-T-GTTAC---------CATATTGAG--TGAGATGTCGA-----------CATCAT--AT------GTTCCTGATA-TCGACAT-AATGA-A-----GTGGTTATCTG-ACTAA-ATGACT----GGCAGAACTATGCCACCAT
gi|125674 : TTCCTTATATCGACATAATGA-AGTGGC-----TATCTG-ACTA--AC-AGA--CT-GACATAACAAT-GCCAC--CATA-T-GTTAC---------CATAATGAG--TGAGATGTCGA-----------CATCAT--AT------GTTCCTGATA-TCGACAT-AATAA-A-----GTGGCTATCTG-ACTAA-CAGGCT----AGCAGAACTATACCAACAT
gi|125680 : TTCCTGAAATCGACATAATGA-AGTGGC-----TATCTG-ACTA--AC-AGG--CT-GGCAAAACTAT-GCCAA--TATA-T-GTTAC---------CATAATGAG--TGAGATGTGGA-----------CATCGT--AT------GTTCTTGATA-TCGACAT-AATGA-A-----GTGGCTATCTG-ACTAA-CAGGCT----GGCAGAACTATGCCAACAT
gi|125682 : TTCCTGATATCGACATAATAA-AGTGGC-----TATCTG-ACTA--AC-AGG--CT-AGCAGAACTAT-ACCAA--CATG-T-GTCAC---------CATAATGAG--TGAGATGTCGA-----------CATCAT--AT------GTTCCTTATA-TCGACAT-ACTGA-A-----GTGGCTATCTG-AGTAA-CAAACT----GACGTAACAATGCCACCAT
gi|125686 : TTCCTGAAATCGACATAATGA-AGTGGC-----TAGCTG-ACTA--AC-AGA--CT-GGCAGAACTAT-GCCAC--CAT
gi|125681 : ctatctgactaacagactgacagaactatgccaccatatgttaccataatgagtgagatgtcgacatcaaatgTTCCTGATATCGACATAATAT-TGTGGC-----TATCTG-ACTA--AC-AGG--CT-GGTAAAATTAT-GCCAC--CATA-T-GTCAC---------CATAATGAG--AGAGATGTCGA-----------CATCAT--AT------GTTTCTGATA-TCGACAT-AATAA-A-----ATGCTTATGTG-ACTAT-TTGGCT----GGCAAAACTATGCCACCAT
gi|125642 : TTCCTGATATCGACATAATGA-AGTGAC-----TATCTG-ACTA--AC-AGA--CT-GACAGAACTAT-GCCAC--CAT
gi|125692 : agttaatcacttgctgatgttacaatacctgaataattgtcttattcaagaatgtcatgtcaccataatgagtgagatgtcgacatcatatgTTCCTGATATCGACATAATGA-AGTGGC-----TATCTG-ACTA--AC-AGA--CT-GACAGAACTAT-GCCAC--CAT
gi|125693 : atgttaccatattgagtgagatgtcgacaacatatgTTCCTGAAATCGACATAATGA-AGTGGC-----TATCTG-ACTA--AC-AGG--CT-GGCAAAACTAT-GCCA
gi|125639 : atgttaccataatgagtgagatgtcgatatcaaatgTTACTGATGTTGCCATAAT--------------CATTTG-AATA--AG-TGA--TT-T----AATCAA-G--AC--GATGAT-GTCAA---------CATAATGAG--TGAGATGTCGA-----------CATCAT--AC------GTTCCTGGTG-TCGACAT-AATTA-A-----GTGGCTTTCTG-ACTAT-CAGGCC----GACAGAACTATGCCACCAT
gi|125641 : agttagtcacTTCCTGATGTCGACATAATGA-GGTGAC-----TATATG-ACTA--TC-AGG--CT-GGTAGAACTAT-GCCAC--CAT
gi|125697 : agttagtcacttactgatgttgccttattcatctaaataagtgacgttataaagacgctgatgtcaacataatgagtgagatgtcgacatcatacgTTCTTAATGTGGACATAATGA-AGTGAC-----TATCTG-ACTA--TC-AGG--CT-GGCAGAACTAT-GTCAC--CAT
gi|125669 : cataatgagtgagatgtcgaaatcataggTTTCTGATGTCGATAAAATGA-AATGAC-----TATCTG-ACTAC-CA-TG---CT-GACAGAACTAT-
gi|125643 : gtcacttactgatgttgccgtaagcatctgaataagtgacttaataaagacactgatgtcaacataatgagtgagatgtcgacatcatacgTTACTGATGCCGACATATTGA-ATTGAC-----TATCTG-ACTA--TC-CGG--CT-GGCAGAACAAT-GCCGA--CAT
gi|125698 : agttgattactatctgatgttgccgtactcattcgaataagtgattttaaaaagacgatgatgtgaacataatgagtgagatgtcgacaccatacgTTCATAATGTCGAC-TAATGA-AATTAT-----TATGTG-ACTA--TC-AGG--CT-TGTAGAAATAT-GCCAC--CAT
gi|125699 : cataatgagtgagatgtcgacatcatacgTTCCTGATGTCGACATAATGA-AGTGAC-----TATC---A---------GG--CT-GGCAGAACTAT-GCCAC--CAT
gi|125646 : atgtcgacatcatacgTTCCTGATGACAACATATTGA-A------------TCTG-ACTA--TC-AGG--TT-AACAGAACTAT-ACCCC--CAT
gi|125688 : agtcagtcatttactgatgttgccattctacgttgaataattgacctaataaagacggtgatgatgtcaacataatgattaagatatcgatatcatacgTTCCTTGTGTCGGCTTAATGG-AGTGAC-----TATGTG-ACTA--TC-AGG--CT-GACAAAACTAT-GTAAC--CAT
gi|125695 : aggacgctgatgtcaatatcagtaaacgcatccatactaacaatgtcgacataatattgtcacgTTCATGATGTCGGCAAAATGT-AGTGAC-----TATCTG-GCTA--TT-TGG--CT-GGCAGAACTAT-GCCTC--CAT
gi|125694 : gtcgaaacaacgacagtgaaacgtcgaaacaacaaaactatcatacgTTCCTGATGTCAACATAATG
gi|125662 : tgtcaacataatgagtgggatgtcgacatcatgctTTACTGATGTTGCTATAAT--------------CATTTG-AATA--AG-TGA--C---ATAAAAAGAC-GTT------TA-T-GTCAA---------CATAATGAA--TGAGATGTCGA-----------CAGCAT--AC------GTTCTTG------------------------------ATCTG-ACTAT-CAGGC-----GGTAGAACTATGCGTCCAT
gi|125672 : gttagtcacTTCCCGTTGTCAACTTAATCA-AA-GGA-----TATGTGGATTA--AA---G--CT-GGCAGAACTAT-TTCAG--CAT
gi|125687 : cttacttatgttgacataattcattcaatacataagtgactttttaaagaacgttatgtcatacgTCCTGATGTCGACATCATGA-AGTGGC-----TATCTG-ACTG-----TCATTCT-GGCAGAACTAT-GCCAC--CAT
gi|125644 : ttaattaaagaagtttatgtcgccataatgactgagatgttgacatcataagcTCCTGATGTCGACATAATGA-AGTGAC-----GAACTA-ACTA--TA-AGG--CT-GGCAT-ACTAT-GCCAA--CA
gi|125648 : agtcagtcacttactgatgatgccataatcatctgaataactgaatgaataagacgttgatgtccacataatgggtgtgatgccgacatcacacgaCCAGATGTCGACTTAATGA-AGTGGT-----AATGTG-ATTATCAA---A--CT-GGCAGAACTAT-GACAC--TA
gi|125684 : agttaatcacttactgatgtttgcataactattagaataaattacttattcaagaaaaattatatcaccaaaatgagttagatgtagacatcatacgacCTGATGTCGACATAATGA-AGTGAC-----GAACTA-ACTA--TA-AGG--CT-GGCATA-CTAT-GCCAA--CAAA-A-G--------------ATTATGAG--TGAGATGTCGA-----------CATCAT--GA------GTTCTTGATA-TCCACAT-AATGA-A-----GTGACTATCTG-ATTAT-CTGAGT----GGCAGAACTTTGCCACCAT
gi|125638 : CTGATGTTGCCATAAT--------------CATCTG-AATA--AG-TGA--CT-T----AATAAA-G--AC--GTTGAT-GTCAA---------CATGATGAG--TGAGATGTCGA-----------CATCGT--AC------GTTCCTGATG-TCGATAT-AATGG-A-----ATGACTATCTG-ACTAT-CAGGCT----GGCAGAACTATGCCACAAT
gi|125640 : agttagtcacctaCTGATGTCGACATCATGACACTGATGTCGACATCTA-ACTA--TC-AGG--CT-GGCAGAACTAT-GCCAC--CAT
gi|125701 : agttaatcacttactgatgttaccatagctatttggataagtggcttattcaagaagtttatgtcgccataatgaatgagatgttgacatcatacgtcaCCGATATCGTC---------GTGAC-----TATATA-ACTA--AC-AGA--CT-GGAAGAACTAT-ACCAC--C
gi|125700 : gatgTGATGTCGACATAATGA-AGTGGC-----TATCTG-ACTA--TC-AGG--CT-GGCAGAAATAT-GCAAC--
gi|125647 : atgtcgacatcaggaacgtaGATGTCGACATAATGA-AATGGC-----TATTTG-ACTA--TC-AGG--CT-GGCAAAACTAT-GCCAC--CAT
gi|125670 : agttaatcatttacggatgttaccataactacttgaataaatcacttattcaaaaagatgatgtcaacataatgagtgaTGTCGACTTAATAG-AGTGAC-----GA-CGA-AGCA--AACTTA--CC-GGCAGAATTGT-GCCAC--CAT
gi|125645 : tcatttacttacttcaccatgattattgatataagtgacttatcaaggacgagtatgtcaacatgatggataagatgtcgacactgtacgtttTGTCGACATAATAA--------------TCTG-ACTA--TC-TGG--CT-GTCAGAACAAT-GTCAC--
gi|125645 : agttagtcacctattgacgttgcaataatcatttgaattagtgacttgataaaaacgatattgtcagcataaacagtgagtTATTGACGT--TGC-AATAAT-----CATTTG-AATT--AG-TGA--CTTGATAAAA--------AC--GATA-TTGTCAG---------CATAAACAG--TGAGTTGTCGA-----------CATAAT--A
gi|125671 : agttagtcaccACATACTGA-AGTGGC-----TATCTG-AGTA--AC-AAA--CT-GACGTAACAAT-GCCAC--CATA-T-GTTAC---------CATAATGAG--TGAGATGTTGA-----------CATCAT--AT------GTTCCTGATA-TCGACAT-AATAT-T-----GTGGCTATCTG-ACTAA-CAGGCT----GGTAAAATTATGCCACCATatctgactatctggctgtcagaacaatgtcac
gi|125702 : ACATAATGA-AGTGGC-----TATCTG-ACTA--AC-AGA--CT-GACAGAACTAT-GCCAC--CAT
gi|125685 : TAA-AATGAT-----TATGCG-ACCA--AC-AGA--CC-GGCAGAATTAT-GTCAT--CA
gi|125641 : tgatgccgtaatcgttgaaatatgtgaattatcaaagaatatagtgacatcacaattataaatatgcaaaaataatacgtttagtatgtcagctT-----CATCTA-AATA--AG-TGA--C--GTTATAAAGAC-GC-------TGAT-GTCAA---------CATAATGAG--TGAGATGTCGA-----------CATCAT--AC------GTTCCTGATG-TCGACAT-AATGA-G-----GTGACTATATG-ACTAT-CAGGCT----GGTAGAACTATGCCACCAT
gi|125686 : agttagtcacttactgatgttgccttat-----TATCTG-ACTA--AC-AGA--CT-GACAGAACTAT-GCCAC--CATA-T-GTTAC---------CATAATGAG--TGAGATGTCGA-----------CATCAA--AT------GTTCCTGAAA-TCGACAT-AATGA-A-----GTGGCTAGCTG-ACTAA-CAGACT----GGCAGAACTATGCCACCAT
gi|125669 : cATCTG-AATA--AG-TGA--CT-T----AATAAA-GACAC----TGAT-GTCAA---------CATAATGAG--TGAGATGTCGA-----------CATCAT--AC------GTTTCTGATG-TCGATAA-AATGA-A-----ATGACTATCTG-ACTAC-CATGCT----GACAGAACTAT
gi|125687 : gtcacttactgatgttgccgtaagcTCTG-CCAG--AA-TGA--CA-GTCAGA--TA--GCCACTTCATGAT-GTCGA---------CATCAGGAGCTTATGATGTCAA-----------CATCTC--A-------GT-CATTATG-GCGACAT-AA
gi|125696 : ttaattaaagaagt--AA-TGA--GT-GG--GA--TGTCGACAT--CATG-C-GTTACTGATGTCTGCGTAATGTG--TTGGATGTCGA-----------CATCAT--actatgccaccat
gi|125643 : tcaatatAC--GATGAT-GTGAA---------CATAATGAG--TGAGATGTCGA-----------CACCAT--AC------GTTACTGATG-CCGACAT-ATTGA-A-----TTGACTATCTG-ACTAT-CCGGCT----GGCAGAACAATGCCGACATgc
gi|125646 : agttgattactatctgatgttgccgtactcattcgaataagtgattttaaaaagATGAT-GTCAA---------CATAATGAT--TAAGATATCGA-----------TATCAT--AC------GTTCCTGATG-ACAACAT-ATTGA-------------ATCTG-ACTAT-CAGGTT----AACAGAACTATACCCCCAT
gi|125649 : agtcagtcatttactgatgttgccattctacgttgaataattgacctaataaagacggtgATGAT-GTCAA---------CCTATTGAG--TGAGATATCGT-----------CAGTTT--AT------ATTCCTAAT--TTAATAT--ATAA-C-----ATAA-----TA-ACTAT-CAGGCT----GATAGAACTATGTC-CCA
gi|125687 : agtcggtcacttactgatgtacataatcatttgaataatatacctaataaataggTA-T-GTCGC---------CATAATGAC--TGAGATGTTGA-----------CATCAT--AA------GCTCCTGATG-TCGACAT-CATGA-A-----GTGGCTATCTG-ACTGT-CATTCT----GGCAGAACTATGCCACCAT
gi|125640 : ttaattaaagaagttTA-T-GTCGC---------CATAATGAA--TGAGATGTTGA-----------CATCAT--AC------GTCACTGATG-TCGACAT-CATGACACTGATGTCGACATCTA-ACTAT-CAGGCT----GGCAGAACTATGCCACCAT
gi|125648 : agttaatcacttactgatgttaccatagctatttggataagtggcttattcaagaagttTA-T-ATCAC---------CAAAATGAG--TTAGATGTAGA-----------CATCAT--AC------GACCCAGATG-TCGACTT-AATGA-A-----GTGGTAATGTG-ATTAT-CAAACT----GGCAGAACTATGACACTA
gi|125670 : agttaatcacttactgatgtttgcataactattagaataaattacttattcaagaaaaatTA-T-GTCAA---------CATGATGGA--TAAGATGTCGA-----------CACTGT--AC------GTTT----TG-TCGACTT-AATAG-A-----GTGAC-----G-ACGAAGCAAACTTACCGGCAGAATTGTGCCACCAT
gi|125654 : tcatttacttacttcaccatgattattgatataagtgacttatcaaggacgagTA-T-GTCAA---------CATAATGAG--AGAGATTTCGA-----------CATCAT--AC------ACACCTGAT
gi|125666 : aggtaatcacttactgagtttgagtatgtgacatgttcaagaaaatTA-T-GTTAC---------CATAATGAA--TGAGATGT
gi|125642 : ttaatcacttactgatgttaccaaatttatttgaataagtcacttattcaaaaagat-T-GTCAC---------CATAATGAG--TGAGATGTCGA-----------CATCAT--AT------GTTCCTGATA-TCGACAT-AATGA-A-----GTGACTATCTG-ACTAA-CAGACT----GACAGAACTATGCCACCAT
gi|125692 : agttaatcacttgctgatgttacaatacctgaataattgtcttattcaagaatgtca-T-GTTAC---------CATATTGAG--TGAGATGTCGA-----------CAACAT--AT------GTTCCTGATA-TCGACAT-AATGA-A-----GTGGCTATCTG-ACTAA-CAGACT----GACAGAACTATGCCACCAT
gi|125693 : a-T-GTTAC---------CATAATGAG--TGAGATGTCGA-----------TATCAA--AT------GTTCCTGAAA-TCGACAT-AATGA-A-----GTGGCTATCTG-ACTAA-CAGGCT----GGCAAAACTATGCCA
gi|125694 : a-T-GTCAA---------CATAATGAG--TGGGATGTCGA-----------CATCAT--GC------TTTCCTGATG-TCAACAT-AATG
gi|125691 : -T-GTCAA---------CATAATG----TTGGATGTCGA-----------CATTAT--GT------GTTTCTGATA-TCTGCAT-AATGA-
gi|125683 : tgaTTAA---------CATAACGAG--AGAAATGTCGA-----------CATCAT--Agagggatgccgacatcatgc
gi|125697 : ttactgatgtcaccatacttcattgaataagtgacttat---------CATAATGAG--TGAGATGTCGA-----------AATCAT--AG------GTTCTTAATG-TGGACAT-AATGA-A-----GTGACTATCTG-ACTAT-CAGGCT----GGCAGAACTATGTCACCATc
gi|125698 : ---------CATAATGAG--TGAGATGTCGA-----------CATCAT--AC------GTTCATAATG-TCGAC-T-AATGA-A-----ATTATTATGTG-ACTAT-CAGGCT----TGTAGAAATATGCCACCAT
gi|125644 : ---------CATAATGGG--TGTGATGCCGA-----------CATCAC--AC------GATCCTGATG-TCGACAT-AATGA-A-----GTGACGAACTA-ACTAT-AAGGCT----GGCAT-ACTATGCCAACA
gi|125689 : agtcagtcacttactgatgatgccataatcatctgaataactgaatgaataagacgttgatgtcca---------CATAATGAG--AGGGATGCCGA-----------CATCAT--GC------GTTCCTG-TAGTCGACGT-AATGA-G-----GT
gi|125690 : tgatatctg---------CGTAATGTG--TTGGATGTCGA-----------CATCAT--GC------GTTCCTTTTG-TCAACAT-AATG--A-----GTGG
gi|125696 : tgatgtctgATAATGAG--TGGGATGTCGA-----------CATCAT--GC------GTTACTGATG-TCTGCGT-AATGT-G-----TTGGATGTC-G-ACgatgtcgacatcatgct
gi|125640 : tcaatAG--TTAGATGTCGA-----------CATCA---GT------G-TCATGATG-TCGACATCAGTGA-C-----GTatcatgc
gi|125695 : agttaatcacttactgatgttaccatagctatttggataagtggcttattcaagaagtttatgtcgccataatgaatgagatgttgacatcatAG--TGAAACGTCGAAACAACAAAACTATCAT--AC------GTTCATGATG-TCGGCAA-AATGT-A-----GTGACTATCTG-GCTAT-TTGGCT----GGCAGAACTATGCCTCCATatcaggctggcagaactatgccaccat
gi|125647 : gtcgaaacaacgacGATGTCAA-----------CATAAT--GA------GTGA--GATG-TCGACAT-AATGA-A-----ATGGCTATTTG-ACTAT-CAGGCT----GGCAAAACTATGCCACCAT
gi|125699 : agttaatcatttacggatgttaccataactacttgaataaatcacttattcaaaaagatATGTCGA-----------CATCAT--AC------GTTCCTGATG-TCGACAT-AATGA-A-----GTGACTAT----------CAGGCT----GGCAGAACTATGCCACCAT
gi|125700 : ATGTCGA-----------CATCAGGAAC------GT--ATGATG-TCGACAT-AATGA-A-----GTGGCTATCTG-ACTAT-CAGGCT----GGCAGAAATATGCAAC
gi|125700 : ATGTCGA-----------CATCAT--AC------GTTCCTGATG-TCGACAT-
gi|125688 : ATGTCGA-----------CATAAT--ATTGTCACGTTCCTTGTG-TCGGCTT-AATGG-A-----GTGACTATGTG-ACTAT-CAGGCT----GACAAAACTATGTAACCATaatgaagtggctatctgactatcaggctggcagaaatatgcaac
gi|125672 : aggacgctgatgtcaatatcagtaaacgcatccatactaacaTCAT--AC------GTTCCCGTTG-TCAACTT-AATCA-A-----A-GGATATGTGGATTAA--AG-CT----GGCAGAACTATTTCAGCAT
gi|125701 : cttacttatgttgacataattcattcaatacataagtgactttttaaagaacgttatgCCGATA-TCGTC---------------GTGACTATATA-ACTAA-CAGACT----GGAAGAACTATACCACC
gi|125645 : gatgTG-TCGACAT-AATA--------------ATCTG-ACTAT-CTGGCT----GTCAGAACAATGTCAC
gi|125702 : agttagtcacctattgacgttgcaataatcatttgaattagtgacttgataaaaacgatattgtcagcataaacagtgagtACAT-AATGA-A-----GTGGCTATCTG-ACTAA-CAGACT----GACAGAACTATGCCACCAT
gi|125685 : TAA-A-----ATGATTATGCG-ACCAA-CAGACC----GGCAGAATTATGTCATCA
16 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|125650 ): AGTTAGTCACTTACAGATGTTGTCATAATCATTTGAATAAGTGACGTACTAAAGATGAT
Unaligned ( gi|125651 ): AGTTAGTCACTTACAGATGTTGTCATAATCATTTGAATAAGTGACGTACTAAAGATGAT
Unaligned ( gi|125667 ): TTAGTCACTTACGGATGTTGTCATAAGCATTTGAATAAGTGACTTACTAAAGATGATTAT
Unaligned ( gi|125652 ): AGTTAGTCACTTACGGATGTTGTCATAATCATTTGAATAAGTGACTTACGAAAGGTGATTAT
Unaligned ( gi|125653 ): AGTTAGTCACTTACGGATGTTGTCATAATCATTTGAATAAGTGACTTACGAAAGGTGATTAT
Unaligned ( gi|125664 ): GTTAGTCACTTACAGACGTTGTCATAATCATTTGAATAAGTGACTTACTAAAGGTGATTAT
Unaligned ( gi|125668 ): TAGTCACTTACAGATGTTGTCATAATCATTTGAATAAGTGACTTACCAAAGATGATTAT
Unaligned ( gi|125655 ): AGTTAGTTACTTACGGATGATGTCATAATCATTTGAATAAGTGACTTACTAAAAATGATTGTACAT
Unaligned ( gi|125656 ): AGTTAGTCACTTAGGGATGTTGTCATAATCATTTGAATAAGTGACTTACGAAAGGTGATTAT
Unaligned ( gi|125665 ): GTTAGTCACTTACTGATGTTGCCATAATCATCTGAATAAGT
Unaligned ( gi|125657 ): AATTAGTCACTTACGGATGTTGTCATAATCTTTTAAATTAGTGACTTACTAAAGATGATAATTCA
Unaligned ( gi|125658 ): AGTTAGTCACTTACGGATGATGTCATAATCATTTGAATAAGTGACTTACGAAAGGTAATTAT
Unaligned ( gi|125659 ): AGTTAGTCACTTACGAATGTTGTCTTAATCATTTGAATAAGTGACTTACTTATGATGATTAT
Unaligned ( gi|125660 ): AGTTAGTCACTTACGGATGTTCTCATAATCATTTGATCATAAGTGACTTACAAAAGGTGATTAT
Unaligned ( gi|125663 ): GTTAGTCAATTACTGCTGTTGCCATCAGTAATTTGAATACGTGACTTAATATAAACGA
Unaligned ( gi|125661 ): AGTTAGTCACTTACGGATGTTGTCATAATCATTTCAATAAG
Alignments
lowQualScore : 22 0 555 1 1 44444444444 11 11 222222 0 22222 1 1 2 2222
lowQualScore : .. . ... . . ........... .. .. ...... . ..... . . . ....
lowQualScore : 00 9 666 1 5 11111111111 22 22 444444 9 44444 0 0 0 1111
consensus : TTCCTGATATCGACATAATGAAGTGGCTATCTGACTAACAGACTGA--CAGAACTATGCCACCATAT-GTCACCATAATGAGTGAGATGTCGA-----------CA--TCAT--A------CGTTCCTGATGTCGACATAATGA-A-----GT-GGCTATCT-GACTATCAGGCT----GGCAGAACTATGCCACCAT
Reference ( family-402 ) : TTCCTGATGTCGACATAATGAAGTGGCTATCTGACTAACAGGCTGG--CAGAACTATGCCACCATAT-GTCACCATAATGAGTGAGATGTCGA-----------CA--TCAT--A------CGTTCCTGATGTCGACATAATGA-A-----GT-GGCTATCT-GACTANCAGGCT----GGCAGAACTATGCCACCAT
gi|125638 : AT-GTCAACATGATGAGTGAGATGTCGA-----------CA--TCGT--A------CGTTCCTGATGTCGATATAATGG-A-----AT-GACTATCT-GACTATCAGGCT----GGCAGAACTATGCCACAAT
gi|125639 : agttagtcacctactgatgttgccataatcatctgaataagtgacttaataaagacgttgTTACTGATGTTGCCATAAT--------CATTTGAATAAGTGATTTAATCAAGACGATG-------AT-GTCAACATAATGAGTGAGATGTCGA-----------CA--TCAT--A------CGTTCCTGGTGTCGACATAATTA-A-----GT-GGCTTTCT-GACTATCAGGCC----GACAGAACTATGCCACCAT
gi|125640 : agttagtcacTAT-GTCGCCATAATGAATGAGATGTTGA-----------CA--TCAT--A------CGTCACTGATGTCGACATCATGACACTGATGT-CGACATCT-AACTATCAGGCT----GGCAGAACTATGCCACCAT
gi|125641 : agttaatcacttactgatgttaccatagctatttggataagtggcttattcaagaagttAT-GTCAACATAATGAGTGAGATGTCGA-----------CA--TCAT--A------CGTTCCTGATGTCGACATAATGA-G-----GT-GACTATAT-GACTATCAGGCT----GGTAGAACTATGCCACCAT
gi|125642 : agttagtcacttactgatgttgccttattcatctaaataagtgacgttataaagacgctgAT-GTCACCATAATGAGTGAGATGTCGA-----------CA--TCAT--A------TGTTCCTGATATCGACATAATGA-A-----GT-GACTATCT-GACTAACAGACT----GACAGAACTATGCCACCAT
gi|125643 : agttaatcacttgctgatgttacaatacctgaataattgtcttattcaagaatgtcAT-GTGAACATAATGAGTGAGATGTCGA-----------CA--CCAT--A------CGTTACTGATGCCGACATATTGA-A-----TT-GACTATCT-GACTATCCGGCT----GGCAGAACAATGCCGACAT
gi|125644 : agttgattactatctgatgttgccgtactcattcgaataagtgattttaaaaagacgatgTTACTGATGATGCCATAAT--------CATCTGAATAACTGAATGAA-TAAGACGTTG-------AT-GTCCACATAATGGGTGTGATGCCGA-----------CA--TCAC--A------CGATCCTGATGTCGACATAATGA-A-----GT-GACGAACT-AACTATAAGGCT----GGCAT-ACTATGCCAACA
gi|125645 : agtcagtcacACGATATTGTCAGCATAAACAGTGAGTTGTCGA-----------CA--TAAT--A------
gi|125645 : agttagtcacctattgacgttgcaataatcatttgaattagtgacttgataaaaTGTCGACATAATAA---------------TCT-GACTATCTGGCT----GTCAGAACAATGTCACatctgactatctggctgtcagaacaatgtcac
gi|125646 : agttagtcacctattgacgttgcaataatcatttgaattagtgacttgataaaaacgatattgtcagcataaacagtgagtAT-GTCAACATAATGATTAAGATATCGA-----------TA--TCAT--A------CGTTCCTGATGACAACATATTGA--------------ATCT-GACTATCAGGTT----AACAGAACTATACCCCCAT
gi|125647 : agtcagtcatttactgatgttgccattctacgttgaataattgacctaataaagacggtgatgGATGTCAA-----------CA--TAAT--G------AGTGA--GATGTCGACATAATGA-A-----AT-GGCTATTT-GACTATCAGGCT----GGCAAAACTATGCCACCAT
gi|125648 : agttaatcatttacggatgttaccataactacttgaataaatcacttattcaaaaagatTAT-ATCACCAAAATGAGTTAGATGTAGA-----------CA--TCAT--A------CGACCCAGATGTCGACTTAATGA-A-----GT-GGTAATGT-GATTATCAAACT----GGCAGAACTATGACACTA
gi|125649 : agttaatcacttactgatgtttgcataactattagaataaattacttattcaagaaaaatAT-GTCAACCTATTGAGTGAGATATCGT-----------CAGTTTAT--A--------TTCCTAAT-TTAATAT-ATAA-C-----AT-AA-----T-AACTATCAGGCT----GATAGAACTATGTC-CCA
gi|125654 : agtcggtcacttactgatgtacataatcatttgaataatatacctaataaataggatgTAT-GTCAACATAATGAGAGAGATTTCGA-----------CA--TCAT--A------CACACCTGAT
gi|125662 : aggtaatcacttactgagtttgagtatgtgacatgttcaagaaaatTAT-GTCAACATAATGAATGAGATGTCGA-----------CA--GCAT--A------CGTTCTTG-----------------------------ATCT-GACTATCAGGC-----GGTAGAACTATGCGTCCAT
gi|125666 : gttagtcacttactgatgttgctataatcatttgaataagtgacataaaaagacgttTAT-GTTACCATAATGAATGAGATGT
gi|125669 : ttaatcacttactgatgttaccaaatttatttgaataagtcacttattcaaaaagatTTACTGATGTTGCCGTAA-------GC-ATCTGAATAA---G-TGA--CTTAATAAAGACACTG-AT-GTCAACATAATGAGTGAGATGTCGA-----------CA--TCAT--A------CGTTTCTGATGTCGATAAAATGA-A-----AT-GACTATCT-GACTACCATGCT----GACAGAACTAT
gi|125670 : gtcacTAT-GTCAACATGATGGATAAGATGTCGA-----------CA--CTGT--A------CGTTT----TGTCGACTTAATAG-A-----GT-GACGA--C-GA--AGCAAACTTACCGGCAGAATTGTGCCACCAT
gi|125671 : tcatttacttacttcaccatgattattgatataagtgacttatcaaggacgagACATACTGAAGTGGCTATCTGAGTAACAAACTGA--CGTAACAATGCCACCATAT-GTTACCATAATGAGTGAGATGTTGA-----------CA--TCAT--A------TGTTCCTGATATCGACATAATAT-T-----GT-GGCTATCT-GACTAACAGGCT----GGTAAAATTATGCCACCAT
gi|125672 : --TCAT--A------CGTTCCCGTTGTCAACTTAATCA-A-----A--GGATATGTGGATTA--AAGCT----GGCAGAACTATTTCAGCAT
gi|125673 : cttacttatgttgacataattcattcaatacataagtgactttttaaagaacgttatgTTCCTGATATCGACATAATGAAGTGGTTATCTGACTAAATGACTGG--CAGAACTATGCCACCATGT-GTTACCATAATGAGTGAGATGTCGA-----------CA--TCAT--A------TGTTCCTGATATCGACATAATGA-A-----GT-GGCTATCT-GACTAACAGACT----GACAGAACTATGCCACCAT
gi|125674 : TTCCTTATATCGACATAATGAAGTGGCTATCTGACTAACAGACTGA--CATAACAATGCCACCATAT-GTTACCATAATGAGTGAGATGTCGA-----------CA--TCAT--A------TGTTCCTGATATCGACATAATAA-A-----GT-GGCTATCT-GACTAACAGGCT----AGCAGAACTATACCAACAT
gi|125675 : TTCCTGATATCGACATAATGAAGTGGCTATCTGACTAACAGACTGA--CAGAACTATGCCACCATAT-GTTACCATAATGAGTGAGATGTTGA-----------CA--T-AT--A------TGTTCCTGATATCGACATAATGA-A-----GT-GGCTATCT-GACTAACAGGCT----GCCAGAATTATGCCACCAT
gi|125676 : TTCCTGAAATCGACATAATGAAGTGGCTATCTGACTAACAGACTGA--CAGAACTATGCCAACATAT-GTTACCATAATGAGTGAGATGTCGA-----------CA--ACAT--A------TGTTCCTGAAATCGACATAATGA-A-----GT-GGCTATCT-GACTAACAGACT----GGCAGAACTATGCCACCAT
gi|125677 : TTCCTGATATCGACATAATGAAGTGGCTATCTGACTAACAGACTGA--CAGAACTATGCCACCATAT-GTTACCATAATGAGTGAGATGTCGA-----------CA--TCAA--A------TGTTCCTGAAATCGACATAATGA-A-----GT-GGCTATCT-GACTAACAGACT----GACAGAACTATGCCAACAT
gi|125678 : TTCCTGATATCGACATAATGAAGTGACTATCTGACTAACAGACTGA--CAGAACTATGCCACCATAT-GTTACCATATTGAGTGAGATGTCGA-----------CA--TCAT--A------TGTTCCTGATATCGACATAATGA-A-----GT-GGTTATCT-GACTAAATGACT----GGCAGAACTATGCCACCAT
gi|125679 : TTCCTGATATCGACATAATGAAGTGGCTATCTGACTAACAGGCTGC--CAGAATTATGCCACCATGT-GTCACCATAATGAGTGAGATGTCGA-----------CA--TCAT--A------TGTTCCTTATATCGACATAATGA-A-----GT-GGCTATCT-GACTAACAGACT----GACATAACAATGCCACCAT
gi|125680 : TTCCTGAAATCGACATAATGAAGTGGCTATCTGACTAACAGGCTGG--CAAAACTATGCCAATATAT-GTTACCATAATGAGTGAGATGTGGA-----------CA--TCGT--A------TGTTCTTGATATCGACATAATGA-A-----GT-GGCTATCT-GACTAACAGGCT----GGCAGAACTATGCCAACAT
gi|125681 : TTCCTGATATCGACATAATATTGTGGCTATCTGACTAACAGGCTGG--TAAAATTATGCCACCATAT-GTCACCATAATGAGAGAGATGTCGA-----------CA--TCAT--A------TGTTTCTGATATCGACATAATAA-A-----AT-GCTTATGT-GACTATTTGGCT----GGCAAAACTATGCCACCAT
gi|125682 : TTCCTGATATCGACATAATAAAGTGGCTATCTGACTAACAGGCTAG--CAGAACTATACCAACATGT-GTCACCATAATGAGTGAGATGTCGA-----------CA--TCAT--A------TGTTCCTTATATCGACATACTGA-A-----GT-GGCTATCT-GAGTAACAAACT----GACGTAACAATGCCACCAT
gi|125683 : CATAACGAGAGAAATGTCGA-----------CA--TCAT--A------C
gi|125684 : ttactgatgtcaccatacttcattgaataagtgacttatttaaCTGATGTCGACATAATGAAGTGACGAACTAACTATAAGGCTGG--CATA-CTATGCCAACAAAA-G-----ATTATGAGTGAGATGTCGA-----------CA--TCAT--G------AGTTCTTGATATCCACATAATGA-A-----GT-GACTATCT-GATTATCTGAGT----GGCAGAACTTTGCCACCAT
gi|125685 : TCACAATTATAAAT---ATGCAAA-----------AA--TAAT--A------CGTTTAGTATGTCAGCTTAA----A-----AT-GATTATGC-GACCAACAGACC----GGCAGAATTATGTCATCA
gi|125685 : tgatgccgtaatcgttgaaatatgtgaattatcaaagaatatagtgacaATGTCAGCTTAA---AATGATTATGCGACCAACAGACCGG--CAGAATTATGTCATCA
gi|125686 : tgatgccgtaatcgttgaaatatgtgaattatcaaagaatatagtgacatcacaattataaatatgcaaaaataatacgtttagtCTATCTGACTAACAGACTGA--CAGAACTATGCCACCATAT-GTTACCATAATGAGTGAGATGTCGA-----------CA--TCAA--A------TGTTCCTGAAATCGACATAATGA-A-----GT-GGCTAGCT-GACTAACAGACT----GGCAGAACTATGCCACCAT
gi|125687 : TAT-GTCGCCATAATGACTGAGATGTTGA-----------CA--TCAT--A------AGCTCCTGATGTCGACATCATGA-A-----GT-GGCTATCT-GACTGTCATTCT----GGCAGAACTATGCCACCAT
gi|125688 : ttaattaaagaagttATGTCGA-----------CA--TAAT--ATTGTCACGTTCCTTGTGTCGGCTTAATGG-A-----GT-GACTATGT-GACTATCAGGCT----GACAAAACTATGTAACCAT
gi|125689 : aggacgctgatgtcaatatcagtaaacgcatccatactaacaCATAATGAGAGGGATGCCGA-----------CA--TCAT--G------CGTTCCTGTAGTCGACGTAATGA-G-----GT-
gi|125690 : tgatatctgAT-GTCTGCGTAATGTGTTGGATGTCGA-----------CA--TCAT--G------CGTTCCTTTTGTCAACATAATG--A-----GTGGGATGTC--GAC-ATCATGCT----
gi|125691 : tgAT-GTCAACATAATG--TTGGATGTCGA-----------CA--TTAT--G------TGTTTCTGATATCTGCATAATGA-
gi|125691 : tgCATAATGAGAGGGATGCCGA-----------CA--TCAT--G------Cgagggatgccgacatcatgc
gi|125692 : tgatgtcaacataatgttggatgtcgacattatgtgtttctgatatctgAT-GTTACCATATTGAGTGAGATGTCGA-----------CA--ACAT--A------TGTTCCTGATATCGACATAATGA-A-----GT-GGCTATCT-GACTAACAGACT----GACAGAACTATGCCACCAT
gi|125693 : AT-GTTACCATAATGAGTGAGATGTCGA-----------TA--TCAA--A------TGTTCCTGAAATCGACATAATGA-A-----GT-GGCTATCT-GACTAACAGGCT----GGCAAAACTATGCCA
gi|125694 : T-GTCAACATAATGAGTGGGATGTCGA-----------CA--TCAT--G------CTTTCCTGATGTCAACATAATG
gi|125695 : AGTGAAACGTCGAAACAACAAAACTA--TCAT--A------CGTTCATGATGTCGGCAAAATGT-A-----GT-GACTATCT-GGCTATTTGGCT----GGCAGAACTATGCCTCCAT
gi|125696 : gtcgaaacaacgacTCAATATAATGAGTGGGATGTCGA-----------CA--TCAT--G------CGTTACTGATGTCTGCGTAATGT-G-----TT-GGATGTC--GAC-ATCATGC
gi|125697 : CATAATGAGTGAGATGTCGA-----------AA--TCAT--A------GGTTCTTAATGTGGACATAATGA-A-----GT-GACTATCT-GACTATCAGGCT----GGCAGAACTATGTCACCAT
gi|125698 : CATAATGAGTGAGATGTCGA-----------CA--TCAT--A------CGTTCATAATGTCGAC-TAATGA-A-----AT-TATTATGT-GACTATCAGGCT----TGTAGAAATATGCCACCAT
gi|125699 : ATGTCGA-----------CA--TCAT--A------CGTTCCTGATGTCGACATAATGA-A-----G---------T-GACTATCAGGCT----GGCAGAACTATGCCACCAT
gi|125700 : ATGTCGA-----------CA--TCAGGAA------CGT--ATGATGTCGACATAATGA-A-----GT-GGCTATCT-GACTATCAGGCT----GGCAGAAATATGCAAC
gi|125701 : GATGCCGATATCGTC--GTGACTATATAACTAACAGACTGG--AAGAACTATACCACC
gi|125702 : ACATAATGAAGTGGCTATCTGACTAACAGACTGA--CAGAACTATGCCACCAT
16 sequences could not be aligned to this reference sequence:
Unaligned ( gi|125650 ): AGTTAGTCACTTACAGATGTTGTCATAATCATTTGAATAAGTGACGTACTAAAGATGAT
Unaligned ( gi|125651 ): AGTTAGTCACTTACAGATGTTGTCATAATCATTTGAATAAGTGACGTACTAAAGATGAT
Unaligned ( gi|125667 ): TTAGTCACTTACGGATGTTGTCATAAGCATTTGAATAAGTGACTTACTAAAGATGATTAT
Unaligned ( gi|125652 ): AGTTAGTCACTTACGGATGTTGTCATAATCATTTGAATAAGTGACTTACGAAAGGTGATTAT
Unaligned ( gi|125653 ): AGTTAGTCACTTACGGATGTTGTCATAATCATTTGAATAAGTGACTTACGAAAGGTGATTAT
Unaligned ( gi|125664 ): GTTAGTCACTTACAGACGTTGTCATAATCATTTGAATAAGTGACTTACTAAAGGTGATTAT
Unaligned ( gi|125668 ): TAGTCACTTACAGATGTTGTCATAATCATTTGAATAAGTGACTTACCAAAGATGATTAT
Unaligned ( gi|125655 ): AGTTAGTTACTTACGGATGATGTCATAATCATTTGAATAAGTGACTTACTAAAAATGATTGTACAT
Unaligned ( gi|125656 ): AGTTAGTCACTTAGGGATGTTGTCATAATCATTTGAATAAGTGACTTACGAAAGGTGATTAT
Unaligned ( gi|125665 ): GTTAGTCACTTACTGATGTTGCCATAATCATCTGAATAAGT
Unaligned ( gi|125657 ): AATTAGTCACTTACGGATGTTGTCATAATCTTTTAAATTAGTGACTTACTAAAGATGATAATTCA
Unaligned ( gi|125658 ): AGTTAGTCACTTACGGATGATGTCATAATCATTTGAATAAGTGACTTACGAAAGGTAATTAT
Unaligned ( gi|125659 ): AGTTAGTCACTTACGAATGTTGTCTTAATCATTTGAATAAGTGACTTACTTATGATGATTAT
Unaligned ( gi|125660 ): AGTTAGTCACTTACGGATGTTCTCATAATCATTTGATCATAAGTGACTTACAAAAGGTGATTAT
Unaligned ( gi|125663 ): GTTAGTCAATTACTGCTGTTGCCATCAGTAATTTGAATACGTGACTTAATATAAACGA
Unaligned ( gi|125661 ): AGTTAGTCACTTACGGATGTTGTCATAATCATTTCAATAAG
Alignments
lowQualScore : 4 1 3 44 1 1 1 1 1 44444444444 11 11 444444 0 22222 0 0 0 0 2 2222
lowQualScore : . . . .. . . . . . ........... .. .. ...... . ..... . . . . . ....
lowQualScore : 9 9 8 55 8 8 7 1 2 22222222222 22 22 333333 9 33333 9 9 9 9 1 1111
consensus : TTCCTGATATCGACATAATGAAGTGGCTATCTGACTAACAGAC-T-GA--CAGA-ACT-ATGCCACCAT-ATGTCACCATAATGAGTGAGATGTCGA-----------CA--TCAT--A------CGTTCCTGATGTCGACATAATGA-A-----GT-G-GCTAT-CT-GACTATCAGGCT----GGCAGAACTATGCCACCAT
Reference ( family-402 ) : TTCCTGATATCGACATAATGAAGTGGCTATCTGACTAACAGAC-T-GA--CAGA-ACT-ATGCCACCAT-ATGTCACCATAATGAGTGAGATGTCGA-----------CA--TCAT--A------CGTTCCTGATGTCGACATAATGA-A-----GT-G-GCTAT-CT-GACTATCAGGCT----GGCAGAACTATGCCACCAT
gi|125638 : CTGATGTTGCCATAAT--------CATCTGAATAAGTGAC-TTAA--TAAAGACG-TTG--------ATGTCAACATGATGAGTGAGATGTCGA-----------CA--TCGT--A------CGTTCCTGATGTCGATATAATGG-A-----AT-G-ACTAT-CT-GACTATCAGGCT----GGCAGAACTATGCCACAAT
gi|125639 : agttagtcacctaTTACTGATGTTGCCATAAT--------CATTTGAATAAGTGAT-T-TAATCAAG-ACG-ATG--------ATGTCAACATAATGAGTGAGATGTCGA-----------CA--TCAT--A------CGTTCCTGGTGTCGACATAATTA-A-----GT-G-GCTTT-CT-GACTATCAGGCC----GACAGAACTATGCCACCAT
gi|125640 : agttagtcacT-ATGTCGCCATAATGAATGAGATGTTGA-----------CA--TCAT--A------CGTCACTGATGTCGACATCATGACACTGATGT-C-GACAT-CT-AACTATCAGGCT----GGCAGAACTATGCCACCAT
gi|125641 : agttaatcacttactgatgttaccatagctatttggataagtggcttattcaagaagtt-ACTGATGTTGCCTT-AT-TCATCTAAATAAGTGA-------------------CG--TTAT--AAAGA--CG---CTGATGTCAACATAATG--A-----GT-GAGATGT-C--GAC-ATCA
gi|125641 : agttagtcactt-ATGTCAACATAATGAGTGAGATGTCGA-----------CA--TCAT--A------CGTTCCTGATGTCGACATAATGA-G-----GT-G-ACTAT-AT-GACTATCAGGCT----GGTAGAACTATGCCACCATtacgttcctgatgtcgacataatgaggtgactatatgactatcaggctggtagaactatgccaccat
gi|125642 : agttagtcacttactgatgttgccttattcatctaaataagtgacgttataaagacgctg-ATGTCACCATAATGAGTGAGATGTCGA-----------CA--TCAT--A------TGTTCCTGATATCGACATAATGA-A-----GT-G-ACTAT-CT-GACTAACAGACT----GACAGAACTATGCCACCAT
gi|125643 : agttaatcacttgctgatgttacaatacctgaataattgtcttattcaagaatgtc-ATGTGAACATAATGAGTGAGATGTCGA-----------CA--CCAT--A------CGTTACTGATGCCGACATATTGA-A-----TT-G-ACTAT-CT-GACTATCCGGCT----GGCAGAACAATGCCGACAT
gi|125644 : agttgattactatctgatgttgccgtactcattcgaataagtgattttaaaaagacgatgTTACTGATGATGCCATAAT--------CATCTGAATAACTGAA-T-GAA-TAAG-ACG-TTG--------ATGTCCACATAATGGGTGTGATGCCGA-----------CA--TCAC--A------CGATCCTGATGTCGACATAATGA-A-----GT-G-ACGAA-CT-AACTATAAGGCT----GGCAT-ACTATGCCAACA
gi|125645 : agtcagtcacTGTCGACATAATAA----------------T-CT-GACTATCTGGCT----GTCAGAACAATGTCAC
gi|125646 : agttagtcacctattgacgttgcaataatcatttgaattagtgacttgataaaaacgatattgtcagcataaacagtgagt-ATGTCAACATAATGATTAAGATATCGA-----------TA--TCAT--A------CGTTCCTGATGACAACATATTGA---------------AT-CT-GACTATCAGGTT----AACAGAACTATACCCCCAT
gi|125647 : agtcagtcatttactgatgttgccattctacgttgaataattgacctaataaagacggtgatgGATGTCAA-----------CA--TAAT--G------AGTGA--GATGTCGACATAATGA-A-----AT-G-GCTAT-TT-GACTATCAGGCT----GGCAAAACTATGCCACCAT
gi|125648 : agttaatcatttacggatgttaccataactacttgaataaatcacttattcaaaaagatT-ATATCACCAAAATGAGTTAGATGTAGA-----------CA--TCAT--A------CGACCCAGATGTCGACTTAATGA-A-----GT-G-GTAAT-GT-GATTATCAAACT----GGCAGAACTATGACACTA
gi|125649 : agttaatcacttactgatgtttgcataactattagaataaattacttattcaagaaaaatTTACTGATGT--ACATAAT--------CATTTGAATAATATACCT-AA--TAAA---T-AGG-----ATGATGTCAACCTATTGAGTGAGATATCGT-----------CAGTTTAT--A--------TTCCTAAT-TTAATAT-ATAA-C-----AT-A-A------T-AACTATCAGGCT----GATAGAACTATGTC-CCA
gi|125654 : agtcggtcacT-ATGTCAACATAATGAGAGAGATTTCGA-----------CA--TCAT--A------CACACCTGAT
gi|125662 : aggtaatcacttactgagtttgagtatgtgacatgttcaagaaaatT-ATGTCAACATAATGAATGAGATGTCGA-----------CA--GCAT--A------CGTTCTTG------------------------------AT-CT-GACTATCAGGC-----GGTAGAACTATGCGTCCAT
gi|125666 : gttagtcacttactgatgttgctataatcatttgaataagtgacataaaaagacgttT-ATGTTACCATAATGAATGAGATGT
gi|125669 : ttaatcacttactgatgttaccaaatttatttgaataagtcacttattcaaaaagatTTACTGATGTTGCCGTAA-------GC-ATCTGAATAAGTGAC-TTAA--TAAA-------GACACTG--ATGTCAACATAATGAGTGAGATGTCGA-----------CA--TCAT--A------CGTTTCTGATGTCGATAAAATGA-A-----AT-G-ACTAT-CT-GACTACCATGCT----GACAGAACTAT
gi|125670 : gtcacT-ATGTCAACATGATGGATAAGATGTCGA-----------CA--CTGT--A------CGTTT----TGTCGACTTAATAG-A-----GT-G-ACGA---C-GA--AGCAAACTTACCGGCAGAATTGTGCCACCAT
gi|125671 : tcatttacttacttcaccatgattattgatataagtgacttatcaaggacgagACATACTGAAGTGGCTATCTGAGTAACAAAC-T-GA--CGTA-ACA-ATGCCACCAT-ATGTTACCATAATGAGTGAGATGTTGA-----------CA--TCAT--A------TGTTCCTGATATCGACATAATAT-T-----GT-G-GCTAT-CT-GACTAACAGGCT----GGTAAAATTATGCCACCAT
gi|125672 : --TCAT--A------CGTTCCCGTTGTCAACTTAATCA-A-----A--G-GATAT-GTGGATTA--AAGCT----GGCAGAACTATTTCAGCAT
gi|125673 : cttacttatgttgacataattcattcaatacataagtgactttttaaagaacgttatgTTCCTGATATCGACATAATGAAGTGGTTATCTGACTAAATGAC-T-GG--CAGA-ACT-ATGCCACCAT-GTGTTACCATAATGAGTGAGATGTCGA-----------CA--TCAT--A------TGTTCCTGATATCGACATAATGA-A-----GT-G-GCTAT-CT-GACTAACAGACT----GACAGAACTATGCCACCAT
gi|125674 : TTCCTTATATCGACATAATGAAGTGGCTATCTGACTAACAGAC-T-GA--CATA-ACA-ATGCCACCAT-ATGTTACCATAATGAGTGAGATGTCGA-----------CA--TCAT--A------TGTTCCTGATATCGACATAATAA-A-----GT-G-GCTAT-CT-GACTAACAGGCT----AGCAGAACTATACCAACAT
gi|125675 : TTCCTGATATCGACATAATGAAGTGGCTATCTGACTAACAGAC-T-GA--CAGA-ACT-ATGCCACCAT-ATGTTACCATAATGAGTGAGATGTTGA-----------CA--T-AT--A------TGTTCCTGATATCGACATAATGA-A-----GT-G-GCTAT-CT-GACTAACAGGCT----GCCAGAATTATGCCACCAT
gi|125676 : TTCCTGAAATCGACATAATGAAGTGGCTATCTGACTAACAGAC-T-GA--CAGA-ACT-ATGCCAACAT-ATGTTACCATAATGAGTGAGATGTCGA-----------CA--ACAT--A------TGTTCCTGAAATCGACATAATGA-A-----GT-G-GCTAT-CT-GACTAACAGACT----GGCAGAACTATGCCACCAT
gi|125677 : TTCCTGATATCGACATAATGAAGTGGCTATCTGACTAACAGAC-T-GA--CAGA-ACT-ATGCCACCAT-ATGTTACCATAATGAGTGAGATGTCGA-----------CA--TCAA--A------TGTTCCTGAAATCGACATAATGA-A-----GT-G-GCTAT-CT-GACTAACAGACT----GACAGAACTATGCCAACAT
gi|125678 : TTCCTGATATCGACATAATGAAGTGACTATCTGACTAACAGAC-T-GA--CAGA-ACT-ATGCCACCAT-ATGTTACCATATTGAGTGAGATGTCGA-----------CA--TCAT--A------TGTTCCTGATATCGACATAATGA-A-----GT-G-GTTAT-CT-GACTAAATGACT----GGCAGAACTATGCCACCAT
gi|125679 : TTCCTGATATCGACATAATGAAGTGGCTATCTGACTAACAGGC-T-GC--CAGA-ATT-ATGCCACCAT-GTGTCACCATAATGAGTGAGATGTCGA-----------CA--TCAT--A------TGTTCCTTATATCGACATAATGA-A-----GT-G-GCTAT-CT-GACTAACAGACT----GACATAACAATGCCACCAT
gi|125680 : TTCCTGAAATCGACATAATGAAGTGGCTATCTGACTAACAGGC-T-GG--CAAA-ACT-ATGCCAATAT-ATGTTACCATAATGAGTGAGATGTGGA-----------CA--TCGT--A------TGTTCTTGATATCGACATAATGA-A-----GT-G-GCTAT-CT-GACTAACAGGCT----GGCAGAACTATGCCAACAT
gi|125681 : TTCCTGATATCGACATAATATTGTGGCTATCTGACTAACAGGC-T-GG--TAAA-ATT-ATGCCACCAT-ATGTCACCATAATGAGAGAGATGTCGA-----------CA--TCAT--A------TGTTTCTGATATCGACATAATAA-A-----AT-G-CTTAT-GT-GACTATTTGGCT----GGCAAAACTATGCCACCAT
gi|125682 : TTCCTGATATCGACATAATAAAGTGGCTATCTGACTAACAGGC-T-AG--CAGA-ACT-ATACCAACAT-GTGTCACCATAATGAGTGAGATGTCGA-----------CA--TCAT--A------TGTTCCTTATATCGACATACTGA-A-----GT-G-GCTAT-CT-GAGTAACAAACT----GACGTAACAATGCCACCAT
gi|125683 : CATAACGAGAGAAATGTCGA-----------CA--TCAT--A------C
gi|125684 : ttactgatgtcaccatacttcattgaataagtgacttatttaaCTGATGTCGACATAATGAAGTGACGAACTAACTATAAGGC-T-GG--CATA--CT-ATGCCAACAA-AAG-----ATTATGAGTGAGATGTCGA-----------CA--TCAT--G------AGTTCTTGATATCCACATAATGA-A-----GT-G-ACTAT-CT-GATTATCTGAGT----GGCAGAACTTTGCCACCAT
gi|125685 : TCACAATTATAAAT---ATGCAAA-----------AA--TAAT--A------CGTTTAGTATGTCAGCTTAA----A-----AT-G-ATTAT-GC-GACCAACAGACC----GGCAGAATTATGTCATCA
gi|125685 : tgatgccgtaatcgttgaaatatgtgaattatcaaagaatatagtgacaTAAAATGATTATGCGACCAACAGAC-C-GG--CAGA-ATT-ATGTCATCA
gi|125686 : tgatgccgtaatcgttgaaatatgtgaattatcaaagaatatagtgacatcacaattataaatatgcaaaaataatacgtttagtatgtcagctCTATCTGACTAACAGAC-T-GA--CAGA-ACT-ATGCCACCAT-ATGTTACCATAATGAGTGAGATGTCGA-----------CA--TCAA--A------TGTTCCTGAAATCGACATAATGA-A-----GT-G-GCTAG-CT-GACTAACAGACT----GGCAGAACTATGCCACCAT
gi|125687 : T-ATGTCGCCATAATGACTGAGATGTTGA-----------CA--TCAT--A------AGCTCCTGATGTCGACATCATGA-A-----GT-G-GCTAT-CT-GACTGTCATTCT----GGCAGAACTATGCCACCAT
gi|125688 : ttaattaaagaagttATGTCGA-----------CA--TAAT--ATTGTCACGTTCCTTGTGTCGGCTTAATGG-A-----GT-G-ACTAT-GT-GACTATCAGGCT----GACAAAACTATGTAACCAT
gi|125689 : aggacgctgatgtcaatatcagtaaacgcatccatactaacaCATAATGAGAGGGATGCCGA-----------CA--TCAT--G------CGTTCCTGTAGTCGACGTAATGA-G-----GT-
gi|125690 : tgatatctg-ATGTCTGCGTAATGTGTTGGATGTCGA-----------CA--TCAT--G------CGTTCCTTTTGTCAACATAATG--A-----GTGG-GATGT-C--GAC-ATCATGCT----
gi|125691 : tg-ATGTCAACATAATG--TTGGATGTCGA-----------CA--TTAT--G------TGTTTCTGATATCTGCATAATGA-G-----AG-G-G--ATGCC-GAC-ATCATGC
gi|125692 : tg-ATGTTACCATATTGAGTGAGATGTCGA-----------CA--ACAT--A------TGTTCCTGATATCGACATAATGA-A-----GT-G-GCTAT-CT-GACTAACAGACT----GACAGAACTATGCCACCAT
gi|125693 : -ATGTTACCATAATGAGTGAGATGTCGA-----------TA--TCAA--A------TGTTCCTGAAATCGACATAATGA-A-----GT-G-GCTAT-CT-GACTAACAGGCT----GGCAAAACTATGCCA
gi|125694 : TGTCAACATAATGAGTGGGATGTCGA-----------CA--TCAT--G------CTTTCCTGATGTCAACATAATG
gi|125695 : AGTGAAACGTCGAAACAACAAAACTA--TCAT--A------CGTTCATGATGTCGGCAAAATGT-A-----GT-G-ACTAT-CT-GGCTATTTGGCT----GGCAGAACTATGCCTCCAT
gi|125696 : gtcgaaacaacgacTCAATATAATGAGTGGGATGTCGA-----------CA--TCAT--G------CGTTACTGATGTCTGCGTAATGT-G-----TT-G-GATGT-C--GAC-ATCATGC
gi|125697 : CATAATGAGTGAGATGTCGA-----------AA--TCAT--A------GGTTCTTAATGTGGACATAATGA-A-----GT-G-ACTAT-CT-GACTATCAGGCT----GGCAGAACTATGTCACCAT
gi|125698 : CATAATGAGTGAGATGTCGA-----------CA--TCAT--A------CGTTCATAATGTCGAC-TAATGA-A-----AT-T-ATTAT-GT-GACTATCAGGCT----TGTAGAAATATGCCACCAT
gi|125699 : ATGTCGA-----------CA--TCAT--A------CGTTCCTGATGTCGACATAATGA-A-----G-----------T-GACTATCAGGCT----GGCAGAACTATGCCACCAT
gi|125700 : ATGTCGA-----------CA--TCAGGAA------CGT--ATGATGTCGACATAATGA-A-----GT-G-GCTAT-CT-GACTATCAGGCT----GGCAGAAATATGCAAC
gi|125701 : CCGATATCGTC--------GTGACTATATAACTAACAGAC-T-GG--AAGA-ACT-ATACCACC
gi|125702 : gatgACATAATGAAGTGGCTATCTGACTAACAGAC-T-GA--CAGA-ACT-ATGCCACCAT-
16 sequences could not be aligned to this reference sequence:
Unaligned ( gi|125650 ): AGTTAGTCACTTACAGATGTTGTCATAATCATTTGAATAAGTGACGTACTAAAGATGAT
Unaligned ( gi|125651 ): AGTTAGTCACTTACAGATGTTGTCATAATCATTTGAATAAGTGACGTACTAAAGATGAT
Unaligned ( gi|125667 ): TTAGTCACTTACGGATGTTGTCATAAGCATTTGAATAAGTGACTTACTAAAGATGATTAT
Unaligned ( gi|125652 ): AGTTAGTCACTTACGGATGTTGTCATAATCATTTGAATAAGTGACTTACGAAAGGTGATTAT
Unaligned ( gi|125653 ): AGTTAGTCACTTACGGATGTTGTCATAATCATTTGAATAAGTGACTTACGAAAGGTGATTAT
Unaligned ( gi|125664 ): GTTAGTCACTTACAGACGTTGTCATAATCATTTGAATAAGTGACTTACTAAAGGTGATTAT
Unaligned ( gi|125668 ): TAGTCACTTACAGATGTTGTCATAATCATTTGAATAAGTGACTTACCAAAGATGATTAT
Unaligned ( gi|125655 ): AGTTAGTTACTTACGGATGATGTCATAATCATTTGAATAAGTGACTTACTAAAAATGATTGTACAT
Unaligned ( gi|125656 ): AGTTAGTCACTTAGGGATGTTGTCATAATCATTTGAATAAGTGACTTACGAAAGGTGATTAT
Unaligned ( gi|125665 ): GTTAGTCACTTACTGATGTTGCCATAATCATCTGAATAAGT
Unaligned ( gi|125657 ): AATTAGTCACTTACGGATGTTGTCATAATCTTTTAAATTAGTGACTTACTAAAGATGATAATTCA
Unaligned ( gi|125658 ): AGTTAGTCACTTACGGATGATGTCATAATCATTTGAATAAGTGACTTACGAAAGGTAATTAT
Unaligned ( gi|125659 ): AGTTAGTCACTTACGAATGTTGTCTTAATCATTTGAATAAGTGACTTACTTATGATGATTAT
Unaligned ( gi|125660 ): AGTTAGTCACTTACGGATGTTCTCATAATCATTTGATCATAAGTGACTTACAAAAGGTGATTAT
Unaligned ( gi|125663 ): GTTAGTCAATTACTGCTGTTGCCATCAGTAATTTGAATACGTGACTTAATATAAACGA
Unaligned ( gi|125661 ): AGTTAGTCACTTACGGATGTTGTCATAATCATTTCAATAAG
Alignments
lowQualScore : 4 1 3 44 1 1 1 1 1 44444444444 11 11 444444 0 22222 0 0 0 0 2 2222
lowQualScore : . . . .. . . . . . ........... .. .. ...... . ..... . . . . . ....
lowQualScore : 9 9 8 55 8 8 7 1 2 22222222222 22 22 333333 9 33333 9 9 9 9 1 1111
consensus : TTCCTGATATCGACATAATGAAGTGGCTATCTGACTAACAGAC-T-GA--CAGA-ACT-ATGCCACCAT-ATGTCACCATAATGAGTGAGATGTCGA-----------CA--TCAT--A------CGTTCCTGATGTCGACATAATGA-A-----GT-G-GCTAT-CT-GACTATCAGGCT----GGCAGAACTATGCCACCAT
Reference ( family-402 ) : TTCCTGATATCGACATAATGAAGTGGCTATCTGACTAACAGAC-T-GA--CAGA-ACT-ATGCCACCAT-ATGTCACCATAATGAGTGAGATGTCGA-----------CA--TCAT--A------CGTTCCTGATGTCGACATAATGA-A-----GT-G-GCTAT-CT-GACTATCAGGCT----GGCAGAACTATGCCACCAT
gi|125638 : CTGATGTTGCCATAAT--------CATCTGAATAAGTGAC-TTAA--TAAAGACG-TTG--------ATGTCAACATGATGAGTGAGATGTCGA-----------CA--TCGT--A------CGTTCCTGATGTCGATATAATGG-A-----AT-G-ACTAT-CT-GACTATCAGGCT----GGCAGAACTATGCCACAAT
gi|125639 : agttagtcacctaTTACTGATGTTGCCATAAT--------CATTTGAATAAGTGAT-T-TAATCAAG-ACG-ATG--------ATGTCAACATAATGAGTGAGATGTCGA-----------CA--TCAT--A------CGTTCCTGGTGTCGACATAATTA-A-----GT-G-GCTTT-CT-GACTATCAGGCC----GACAGAACTATGCCACCAT
gi|125640 : agttagtcacT-ATGTCGCCATAATGAATGAGATGTTGA-----------CA--TCAT--A------CGTCACTGATGTCGACATCATGACACTGATGT-C-GACAT-CT-AACTATCAGGCT----GGCAGAACTATGCCACCAT
gi|125641 : agttaatcacttactgatgttaccatagctatttggataagtggcttattcaagaagtt-ACTGATGTTGCCTT-AT-TCATCTAAATAAGTGA-------------------CG--TTAT--AAAGA--CG---CTGATGTCAACATAATG--A-----GT-GAGATGT-C--GAC-ATCA
gi|125641 : agttagtcactt-ATGTCAACATAATGAGTGAGATGTCGA-----------CA--TCAT--A------CGTTCCTGATGTCGACATAATGA-G-----GT-G-ACTAT-AT-GACTATCAGGCT----GGTAGAACTATGCCACCATtacgttcctgatgtcgacataatgaggtgactatatgactatcaggctggtagaactatgccaccat
gi|125642 : agttagtcacttactgatgttgccttattcatctaaataagtgacgttataaagacgctg-ATGTCACCATAATGAGTGAGATGTCGA-----------CA--TCAT--A------TGTTCCTGATATCGACATAATGA-A-----GT-G-ACTAT-CT-GACTAACAGACT----GACAGAACTATGCCACCAT
gi|125643 : agttaatcacttgctgatgttacaatacctgaataattgtcttattcaagaatgtc-ATGTGAACATAATGAGTGAGATGTCGA-----------CA--CCAT--A------CGTTACTGATGCCGACATATTGA-A-----TT-G-ACTAT-CT-GACTATCCGGCT----GGCAGAACAATGCCGACAT
gi|125644 : agttgattactatctgatgttgccgtactcattcgaataagtgattttaaaaagacgatgTTACTGATGATGCCATAAT--------CATCTGAATAACTGAA-T-GAA-TAAG-ACG-TTG--------ATGTCCACATAATGGGTGTGATGCCGA-----------CA--TCAC--A------CGATCCTGATGTCGACATAATGA-A-----GT-G-ACGAA-CT-AACTATAAGGCT----GGCAT-ACTATGCCAACA
gi|125645 : agtcagtcacTGTCGACATAATAA----------------T-CT-GACTATCTGGCT----GTCAGAACAATGTCAC
gi|125646 : agttagtcacctattgacgttgcaataatcatttgaattagtgacttgataaaaacgatattgtcagcataaacagtgagt-ATGTCAACATAATGATTAAGATATCGA-----------TA--TCAT--A------CGTTCCTGATGACAACATATTGA---------------AT-CT-GACTATCAGGTT----AACAGAACTATACCCCCAT
gi|125647 : agtcagtcatttactgatgttgccattctacgttgaataattgacctaataaagacggtgatgGATGTCAA-----------CA--TAAT--G------AGTGA--GATGTCGACATAATGA-A-----AT-G-GCTAT-TT-GACTATCAGGCT----GGCAAAACTATGCCACCAT
gi|125648 : agttaatcatttacggatgttaccataactacttgaataaatcacttattcaaaaagatT-ATATCACCAAAATGAGTTAGATGTAGA-----------CA--TCAT--A------CGACCCAGATGTCGACTTAATGA-A-----GT-G-GTAAT-GT-GATTATCAAACT----GGCAGAACTATGACACTA
gi|125649 : agttaatcacttactgatgtttgcataactattagaataaattacttattcaagaaaaatTTACTGATGT--ACATAAT--------CATTTGAATAATATACCT-AA--TAAA---T-AGG-----ATGATGTCAACCTATTGAGTGAGATATCGT-----------CAGTTTAT--A--------TTCCTAAT-TTAATAT-ATAA-C-----AT-A-A------T-AACTATCAGGCT----GATAGAACTATGTC-CCA
gi|125654 : agtcggtcacT-ATGTCAACATAATGAGAGAGATTTCGA-----------CA--TCAT--A------CACACCTGAT
gi|125662 : aggtaatcacttactgagtttgagtatgtgacatgttcaagaaaatT-ATGTCAACATAATGAATGAGATGTCGA-----------CA--GCAT--A------CGTTCTTG------------------------------AT-CT-GACTATCAGGC-----GGTAGAACTATGCGTCCAT
gi|125666 : gttagtcacttactgatgttgctataatcatttgaataagtgacataaaaagacgttT-ATGTTACCATAATGAATGAGATGT
gi|125669 : ttaatcacttactgatgttaccaaatttatttgaataagtcacttattcaaaaagatTTACTGATGTTGCCGTAA-------GC-ATCTGAATAAGTGAC-TTAA--TAAA-------GACACTG--ATGTCAACATAATGAGTGAGATGTCGA-----------CA--TCAT--A------CGTTTCTGATGTCGATAAAATGA-A-----AT-G-ACTAT-CT-GACTACCATGCT----GACAGAACTAT
gi|125670 : gtcacT-ATGTCAACATGATGGATAAGATGTCGA-----------CA--CTGT--A------CGTTT----TGTCGACTTAATAG-A-----GT-G-ACGA---C-GA--AGCAAACTTACCGGCAGAATTGTGCCACCAT
gi|125671 : tcatttacttacttcaccatgattattgatataagtgacttatcaaggacgagACATACTGAAGTGGCTATCTGAGTAACAAAC-T-GA--CGTA-ACA-ATGCCACCAT-ATGTTACCATAATGAGTGAGATGTTGA-----------CA--TCAT--A------TGTTCCTGATATCGACATAATAT-T-----GT-G-GCTAT-CT-GACTAACAGGCT----GGTAAAATTATGCCACCAT
gi|125672 : --TCAT--A------CGTTCCCGTTGTCAACTTAATCA-A-----A--G-GATAT-GTGGATTA--AAGCT----GGCAGAACTATTTCAGCAT
gi|125673 : cttacttatgttgacataattcattcaatacataagtgactttttaaagaacgttatgTTCCTGATATCGACATAATGAAGTGGTTATCTGACTAAATGAC-T-GG--CAGA-ACT-ATGCCACCAT-GTGTTACCATAATGAGTGAGATGTCGA-----------CA--TCAT--A------TGTTCCTGATATCGACATAATGA-A-----GT-G-GCTAT-CT-GACTAACAGACT----GACAGAACTATGCCACCAT
gi|125674 : TTCCTTATATCGACATAATGAAGTGGCTATCTGACTAACAGAC-T-GA--CATA-ACA-ATGCCACCAT-ATGTTACCATAATGAGTGAGATGTCGA-----------CA--TCAT--A------TGTTCCTGATATCGACATAATAA-A-----GT-G-GCTAT-CT-GACTAACAGGCT----AGCAGAACTATACCAACAT
gi|125675 : TTCCTGATATCGACATAATGAAGTGGCTATCTGACTAACAGAC-T-GA--CAGA-ACT-ATGCCACCAT-ATGTTACCATAATGAGTGAGATGTTGA-----------CA--T-AT--A------TGTTCCTGATATCGACATAATGA-A-----GT-G-GCTAT-CT-GACTAACAGGCT----GCCAGAATTATGCCACCAT
gi|125676 : TTCCTGAAATCGACATAATGAAGTGGCTATCTGACTAACAGAC-T-GA--CAGA-ACT-ATGCCAACAT-ATGTTACCATAATGAGTGAGATGTCGA-----------CA--ACAT--A------TGTTCCTGAAATCGACATAATGA-A-----GT-G-GCTAT-CT-GACTAACAGACT----GGCAGAACTATGCCACCAT
gi|125677 : TTCCTGATATCGACATAATGAAGTGGCTATCTGACTAACAGAC-T-GA--CAGA-ACT-ATGCCACCAT-ATGTTACCATAATGAGTGAGATGTCGA-----------CA--TCAA--A------TGTTCCTGAAATCGACATAATGA-A-----GT-G-GCTAT-CT-GACTAACAGACT----GACAGAACTATGCCAACAT
gi|125678 : TTCCTGATATCGACATAATGAAGTGACTATCTGACTAACAGAC-T-GA--CAGA-ACT-ATGCCACCAT-ATGTTACCATATTGAGTGAGATGTCGA-----------CA--TCAT--A------TGTTCCTGATATCGACATAATGA-A-----GT-G-GTTAT-CT-GACTAAATGACT----GGCAGAACTATGCCACCAT
gi|125679 : TTCCTGATATCGACATAATGAAGTGGCTATCTGACTAACAGGC-T-GC--CAGA-ATT-ATGCCACCAT-GTGTCACCATAATGAGTGAGATGTCGA-----------CA--TCAT--A------TGTTCCTTATATCGACATAATGA-A-----GT-G-GCTAT-CT-GACTAACAGACT----GACATAACAATGCCACCAT
gi|125680 : TTCCTGAAATCGACATAATGAAGTGGCTATCTGACTAACAGGC-T-GG--CAAA-ACT-ATGCCAATAT-ATGTTACCATAATGAGTGAGATGTGGA-----------CA--TCGT--A------TGTTCTTGATATCGACATAATGA-A-----GT-G-GCTAT-CT-GACTAACAGGCT----GGCAGAACTATGCCAACAT
gi|125681 : TTCCTGATATCGACATAATATTGTGGCTATCTGACTAACAGGC-T-GG--TAAA-ATT-ATGCCACCAT-ATGTCACCATAATGAGAGAGATGTCGA-----------CA--TCAT--A------TGTTTCTGATATCGACATAATAA-A-----AT-G-CTTAT-GT-GACTATTTGGCT----GGCAAAACTATGCCACCAT
gi|125682 : TTCCTGATATCGACATAATAAAGTGGCTATCTGACTAACAGGC-T-AG--CAGA-ACT-ATACCAACAT-GTGTCACCATAATGAGTGAGATGTCGA-----------CA--TCAT--A------TGTTCCTTATATCGACATACTGA-A-----GT-G-GCTAT-CT-GAGTAACAAACT----GACGTAACAATGCCACCAT
gi|125683 : CATAACGAGAGAAATGTCGA-----------CA--TCAT--A------C
gi|125684 : ttactgatgtcaccatacttcattgaataagtgacttatttaaCTGATGTCGACATAATGAAGTGACGAACTAACTATAAGGC-T-GG--CATA--CT-ATGCCAACAA-AAG-----ATTATGAGTGAGATGTCGA-----------CA--TCAT--G------AGTTCTTGATATCCACATAATGA-A-----GT-G-ACTAT-CT-GATTATCTGAGT----GGCAGAACTTTGCCACCAT
gi|125685 : TCACAATTATAAAT---ATGCAAA-----------AA--TAAT--A------CGTTTAGTATGTCAGCTTAA----A-----AT-G-ATTAT-GC-GACCAACAGACC----GGCAGAATTATGTCATCA
gi|125685 : tgatgccgtaatcgttgaaatatgtgaattatcaaagaatatagtgacaTAAAATGATTATGCGACCAACAGAC-C-GG--CAGA-ATT-ATGTCATCA
gi|125686 : tgatgccgtaatcgttgaaatatgtgaattatcaaagaatatagtgacatcacaattataaatatgcaaaaataatacgtttagtatgtcagctCTATCTGACTAACAGAC-T-GA--CAGA-ACT-ATGCCACCAT-ATGTTACCATAATGAGTGAGATGTCGA-----------CA--TCAA--A------TGTTCCTGAAATCGACATAATGA-A-----GT-G-GCTAG-CT-GACTAACAGACT----GGCAGAACTATGCCACCAT
gi|125687 : T-ATGTCGCCATAATGACTGAGATGTTGA-----------CA--TCAT--A------AGCTCCTGATGTCGACATCATGA-A-----GT-G-GCTAT-CT-GACTGTCATTCT----GGCAGAACTATGCCACCAT
gi|125688 : ttaattaaagaagttATGTCGA-----------CA--TAAT--ATTGTCACGTTCCTTGTGTCGGCTTAATGG-A-----GT-G-ACTAT-GT-GACTATCAGGCT----GACAAAACTATGTAACCAT
gi|125689 : aggacgctgatgtcaatatcagtaaacgcatccatactaacaCATAATGAGAGGGATGCCGA-----------CA--TCAT--G------CGTTCCTGTAGTCGACGTAATGA-G-----GT-
gi|125690 : tgatatctg-ATGTCTGCGTAATGTGTTGGATGTCGA-----------CA--TCAT--G------CGTTCCTTTTGTCAACATAATG--A-----GTGG-GATGT-C--GAC-ATCATGCT----
gi|125691 : tg-ATGTCAACATAATG--TTGGATGTCGA-----------CA--TTAT--G------TGTTTCTGATATCTGCATAATGA-G-----AG-G-G--ATGCC-GAC-ATCATGC
gi|125692 : tg-ATGTTACCATATTGAGTGAGATGTCGA-----------CA--ACAT--A------TGTTCCTGATATCGACATAATGA-A-----GT-G-GCTAT-CT-GACTAACAGACT----GACAGAACTATGCCACCAT
gi|125693 : -ATGTTACCATAATGAGTGAGATGTCGA-----------TA--TCAA--A------TGTTCCTGAAATCGACATAATGA-A-----GT-G-GCTAT-CT-GACTAACAGGCT----GGCAAAACTATGCCA
gi|125694 : TGTCAACATAATGAGTGGGATGTCGA-----------CA--TCAT--G------CTTTCCTGATGTCAACATAATG
gi|125695 : AGTGAAACGTCGAAACAACAAAACTA--TCAT--A------CGTTCATGATGTCGGCAAAATGT-A-----GT-G-ACTAT-CT-GGCTATTTGGCT----GGCAGAACTATGCCTCCAT
gi|125696 : gtcgaaacaacgacTCAATATAATGAGTGGGATGTCGA-----------CA--TCAT--G------CGTTACTGATGTCTGCGTAATGT-G-----TT-G-GATGT-C--GAC-ATCATGC
gi|125697 : CATAATGAGTGAGATGTCGA-----------AA--TCAT--A------GGTTCTTAATGTGGACATAATGA-A-----GT-G-ACTAT-CT-GACTATCAGGCT----GGCAGAACTATGTCACCAT
gi|125698 : CATAATGAGTGAGATGTCGA-----------CA--TCAT--A------CGTTCATAATGTCGAC-TAATGA-A-----AT-T-ATTAT-GT-GACTATCAGGCT----TGTAGAAATATGCCACCAT
gi|125699 : ATGTCGA-----------CA--TCAT--A------CGTTCCTGATGTCGACATAATGA-A-----G-----------T-GACTATCAGGCT----GGCAGAACTATGCCACCAT
gi|125700 : ATGTCGA-----------CA--TCAGGAA------CGT--ATGATGTCGACATAATGA-A-----GT-G-GCTAT-CT-GACTATCAGGCT----GGCAGAAATATGCAAC
gi|125701 : CCGATATCGTC--------GTGACTATATAACTAACAGAC-T-GG--AAGA-ACT-ATACCACC
gi|125702 : gatgACATAATGAAGTGGCTATCTGACTAACAGAC-T-GA--CAGA-ACT-ATGCCACCAT-
blockSeqs : G C T AT . G T G A AACAACAAAAC GT GA TTGTCA CTGAT T TACC
blockSeqs : G . . A . . A . C . . . AAGA . T .
blockSeqs : G . . . . . C . T . . . . . T .
blockSeqs : G . . . . . C . A . . . . . T .
blockSeqs : G . . . . . C . C . . . . . A .
blockSeqs : G . . . . . C . A . . . . . T .
blockSeqs : G . . . . . C . A . . . . . T .
blockSeqs : G . . . . . C . A . . . . . T .
blockSeqs : G . . . . . C . C . . . . . T .
blockSeqs : A . . . . . C . A . . . . . T .
blockSeqs : A . . . . . C . A . . . . . T .
blockSeqs : G . . . . . C . A . . . . . T .
blockSeqs : A . . . . . C . C . . . . . T .
blockSeqs : G . . . . . C . A . . . . . C .
blockSeqs : . . . . . . T . A . . . . . G .
blockSeqs : . . . . . . C . C . . . . . A .
blockSeqs : . . . . . . C . C . . . . . A .
blockSeqs : . . . . . . C . C . . . . . A .
blockSeqs : . . . . . . . . C . . . . . A .
blockSeqs : . . . . . . . C . . . . . A .
blockSeqs : . . . . C . . . . . A .
blockSeqs : . C . . . . . A .
blockSeqs : . C . . . . . A .
blockSeqs : . C . . . . . A .
blockSeqs : . C . . . . . T .
blockSeqs : . C . . . . . A .
blockSeqs : . C . . . . . T .
blockSeqs : . C . . . . . A .
blockSeqs : . C . . . . . A .
blockSeqs : . G . . . . . T .
blockSeqs : . A . . . . . T .
blockSeqs : . C . . . . . T .
blockSeqs : . C . . . . . T .
blockSeqs : . A . . . . . A .
blockSeqs : A . . . . . A .
blockSeqs : . . . . . . T .
blockSeqs : . . . . . T .
blockSeqs : . . . . . T .
blockSeqs : . . . . . T .
blockSeqs : . . . . . T
blockSeqs : . . . . . T
blockSeqs : . . . . . .
blockSeqs : . . . . .
blockSeqs : . . . .
blockSeqs : . . .
blockSeqCons :
originalCons : TTCCTGATATCGACATAATGAAGTGGCTATCTGACTAACAGAC-T-GA--CAGA-ACT-ATGCCACCAT-ATGTCACCATAATGAGTGAGATGTCGA-----------CA--TCAT--A------CGTTCCTGATGTCGACATAATGA-A-----GT-G-GCTAT-CT-GACTATCAGGCT----GGCAGAACTATGCCACCAT
finalCons : TTCCTGATATCGACATAATGAAGTGGCTATCTGACTAACAGAC-T-GA--CAGA-ACT-ATGCCACCAT-ATGTCACCATAATGAGTGAGATGTCGA-----------CA--TCAT--A------CGTTCCTGATGTCGACATAATGA-A-----GT-G-GCTAT-CT-GACTATCAGGCT----GGCAGAACTATGCCACCAT
16 sequences could not be aligned to this reference sequence:
Unaligned ( gi|125650 ): AGTTAGTCACTTACAGATGTTGTCATAATCATTTGAATAAGTGACGTACTAAAGATGAT
Unaligned ( gi|125651 ): AGTTAGTCACTTACAGATGTTGTCATAATCATTTGAATAAGTGACGTACTAAAGATGAT
Unaligned ( gi|125667 ): TTAGTCACTTACGGATGTTGTCATAAGCATTTGAATAAGTGACTTACTAAAGATGATTAT
Unaligned ( gi|125652 ): AGTTAGTCACTTACGGATGTTGTCATAATCATTTGAATAAGTGACTTACGAAAGGTGATTAT
Unaligned ( gi|125653 ): AGTTAGTCACTTACGGATGTTGTCATAATCATTTGAATAAGTGACTTACGAAAGGTGATTAT
Unaligned ( gi|125664 ): GTTAGTCACTTACAGACGTTGTCATAATCATTTGAATAAGTGACTTACTAAAGGTGATTAT
Unaligned ( gi|125668 ): TAGTCACTTACAGATGTTGTCATAATCATTTGAATAAGTGACTTACCAAAGATGATTAT
Unaligned ( gi|125655 ): AGTTAGTTACTTACGGATGATGTCATAATCATTTGAATAAGTGACTTACTAAAAATGATTGTACAT
Unaligned ( gi|125656 ): AGTTAGTCACTTAGGGATGTTGTCATAATCATTTGAATAAGTGACTTACGAAAGGTGATTAT
Unaligned ( gi|125665 ): GTTAGTCACTTACTGATGTTGCCATAATCATCTGAATAAGT
Unaligned ( gi|125657 ): AATTAGTCACTTACGGATGTTGTCATAATCTTTTAAATTAGTGACTTACTAAAGATGATAATTCA
Unaligned ( gi|125658 ): AGTTAGTCACTTACGGATGATGTCATAATCATTTGAATAAGTGACTTACGAAAGGTAATTAT
Unaligned ( gi|125659 ): AGTTAGTCACTTACGAATGTTGTCTTAATCATTTGAATAAGTGACTTACTTATGATGATTAT
Unaligned ( gi|125660 ): AGTTAGTCACTTACGGATGTTCTCATAATCATTTGATCATAAGTGACTTACAAAAGGTGATTAT
Unaligned ( gi|125663 ): GTTAGTCAATTACTGCTGTTGCCATCAGTAATTTGAATACGTGACTTAATATAAACGA
Unaligned ( gi|125661 ): AGTTAGTCACTTACGGATGTTGTCATAATCATTTCAATAAG
Alignments
lowQualScore : 4 1 3 44 1 1 1 1 1 44444444444 11 11 444444 0 22222 0 0 0 0 2 2222
lowQualScore : . . . .. . . . . . ........... .. .. ...... . ..... . . . . . ....
lowQualScore : 9 9 8 55 8 8 7 1 2 22222222222 22 22 333333 9 33333 9 9 9 9 1 1111
consensus : TTCCTGATATCGACATAATGAAGTGGCTATCTGACTAACAGAC-T-GA--CAGA-ACT-ATGCCACCAT-ATGTCACCATAATGAGTGAGATGTCGA-----------CA--TCAT--A------CGTTCCTGATGTCGACATAATGA-A-----GT-G-GCTAT-CT-GACTATCAGGCT----GGCAGAACTATGCCACCAT
Reference ( family-402 ) : TTCCTGATATCGACATAATGAAGTGGCTATCTGACTAACAGAC-T-GA--CAGA-ACT-ATGCCACCAT-ATGTCACCATAATGAGTGAGATGTCGA-----------CA--TCAT--A------CGTTCCTGATGTCGACATAATGA-A-----GT-G-GCTAT-CT-GACTATCAGGCT----GGCAGAACTATGCCACCAT
gi|125638 : CTGATGTTGCCATAAT--------CATCTGAATAAGTGAC-TTAA--TAAAGACG-TTG--------ATGTCAACATGATGAGTGAGATGTCGA-----------CA--TCGT--A------CGTTCCTGATGTCGATATAATGG-A-----AT-G-ACTAT-CT-GACTATCAGGCT----GGCAGAACTATGCCACAAT
gi|125639 : agttagtcacctaTTACTGATGTTGCCATAAT--------CATTTGAATAAGTGAT-T-TAATCAAG-ACG-ATG--------ATGTCAACATAATGAGTGAGATGTCGA-----------CA--TCAT--A------CGTTCCTGGTGTCGACATAATTA-A-----GT-G-GCTTT-CT-GACTATCAGGCC----GACAGAACTATGCCACCAT
gi|125640 : agttagtcacT-ATGTCGCCATAATGAATGAGATGTTGA-----------CA--TCAT--A------CGTCACTGATGTCGACATCATGACACTGATGT-C-GACAT-CT-AACTATCAGGCT----GGCAGAACTATGCCACCAT
gi|125641 : agttaatcacttactgatgttaccatagctatttggataagtggcttattcaagaagtt-ACTGATGTTGCCTT-AT-TCATCTAAATAAGTGA-------------------CG--TTAT--AAAGA--CG---CTGATGTCAACATAATG--A-----GT-GAGATGT-C--GAC-ATCA
gi|125641 : agttagtcactt-ATGTCAACATAATGAGTGAGATGTCGA-----------CA--TCAT--A------CGTTCCTGATGTCGACATAATGA-G-----GT-G-ACTAT-AT-GACTATCAGGCT----GGTAGAACTATGCCACCATtacgttcctgatgtcgacataatgaggtgactatatgactatcaggctggtagaactatgccaccat
gi|125642 : agttagtcacttactgatgttgccttattcatctaaataagtgacgttataaagacgctg-ATGTCACCATAATGAGTGAGATGTCGA-----------CA--TCAT--A------TGTTCCTGATATCGACATAATGA-A-----GT-G-ACTAT-CT-GACTAACAGACT----GACAGAACTATGCCACCAT
gi|125643 : agttaatcacttgctgatgttacaatacctgaataattgtcttattcaagaatgtc-ATGTGAACATAATGAGTGAGATGTCGA-----------CA--CCAT--A------CGTTACTGATGCCGACATATTGA-A-----TT-G-ACTAT-CT-GACTATCCGGCT----GGCAGAACAATGCCGACAT
gi|125644 : agttgattactatctgatgttgccgtactcattcgaataagtgattttaaaaagacgatgTTACTGATGATGCCATAAT--------CATCTGAATAACTGAA-T-GAA-TAAG-ACG-TTG--------ATGTCCACATAATGGGTGTGATGCCGA-----------CA--TCAC--A------CGATCCTGATGTCGACATAATGA-A-----GT-G-ACGAA-CT-AACTATAAGGCT----GGCAT-ACTATGCCAACA
gi|125645 : agtcagtcacTGTCGACATAATAA----------------T-CT-GACTATCTGGCT----GTCAGAACAATGTCAC
gi|125646 : agttagtcacctattgacgttgcaataatcatttgaattagtgacttgataaaaacgatattgtcagcataaacagtgagt-ATGTCAACATAATGATTAAGATATCGA-----------TA--TCAT--A------CGTTCCTGATGACAACATATTGA---------------AT-CT-GACTATCAGGTT----AACAGAACTATACCCCCAT
gi|125647 : agtcagtcatttactgatgttgccattctacgttgaataattgacctaataaagacggtgatgGATGTCAA-----------CA--TAAT--G------AGTGA--GATGTCGACATAATGA-A-----AT-G-GCTAT-TT-GACTATCAGGCT----GGCAAAACTATGCCACCAT
gi|125648 : agttaatcatttacggatgttaccataactacttgaataaatcacttattcaaaaagatT-ATATCACCAAAATGAGTTAGATGTAGA-----------CA--TCAT--A------CGACCCAGATGTCGACTTAATGA-A-----GT-G-GTAAT-GT-GATTATCAAACT----GGCAGAACTATGACACTA
gi|125649 : agttaatcacttactgatgtttgcataactattagaataaattacttattcaagaaaaatTTACTGATGT--ACATAAT--------CATTTGAATAATATACCT-AA--TAAA---T-AGG-----ATGATGTCAACCTATTGAGTGAGATATCGT-----------CAGTTTAT--A--------TTCCTAAT-TTAATAT-ATAA-C-----AT-A-A------T-AACTATCAGGCT----GATAGAACTATGTC-CCA
gi|125654 : agtcggtcacT-ATGTCAACATAATGAGAGAGATTTCGA-----------CA--TCAT--A------CACACCTGAT
gi|125662 : aggtaatcacttactgagtttgagtatgtgacatgttcaagaaaatT-ATGTCAACATAATGAATGAGATGTCGA-----------CA--GCAT--A------CGTTCTTG------------------------------AT-CT-GACTATCAGGC-----GGTAGAACTATGCGTCCAT
gi|125666 : gttagtcacttactgatgttgctataatcatttgaataagtgacataaaaagacgttT-ATGTTACCATAATGAATGAGATGT
gi|125669 : ttaatcacttactgatgttaccaaatttatttgaataagtcacttattcaaaaagatTTACTGATGTTGCCGTAA-------GC-ATCTGAATAAGTGAC-TTAA--TAAA-------GACACTG--ATGTCAACATAATGAGTGAGATGTCGA-----------CA--TCAT--A------CGTTTCTGATGTCGATAAAATGA-A-----AT-G-ACTAT-CT-GACTACCATGCT----GACAGAACTAT
gi|125670 : gtcacT-ATGTCAACATGATGGATAAGATGTCGA-----------CA--CTGT--A------CGTTT----TGTCGACTTAATAG-A-----GT-G-ACGA---C-GA--AGCAAACTTACCGGCAGAATTGTGCCACCAT
gi|125671 : tcatttacttacttcaccatgattattgatataagtgacttatcaaggacgagACATACTGAAGTGGCTATCTGAGTAACAAAC-T-GA--CGTA-ACA-ATGCCACCAT-ATGTTACCATAATGAGTGAGATGTTGA-----------CA--TCAT--A------TGTTCCTGATATCGACATAATAT-T-----GT-G-GCTAT-CT-GACTAACAGGCT----GGTAAAATTATGCCACCAT
gi|125672 : --TCAT--A------CGTTCCCGTTGTCAACTTAATCA-A-----A--G-GATAT-GTGGATTA--AAGCT----GGCAGAACTATTTCAGCAT
gi|125673 : cttacttatgttgacataattcattcaatacataagtgactttttaaagaacgttatgTTCCTGATATCGACATAATGAAGTGGTTATCTGACTAAATGAC-T-GG--CAGA-ACT-ATGCCACCAT-GTGTTACCATAATGAGTGAGATGTCGA-----------CA--TCAT--A------TGTTCCTGATATCGACATAATGA-A-----GT-G-GCTAT-CT-GACTAACAGACT----GACAGAACTATGCCACCAT
gi|125674 : TTCCTTATATCGACATAATGAAGTGGCTATCTGACTAACAGAC-T-GA--CATA-ACA-ATGCCACCAT-ATGTTACCATAATGAGTGAGATGTCGA-----------CA--TCAT--A------TGTTCCTGATATCGACATAATAA-A-----GT-G-GCTAT-CT-GACTAACAGGCT----AGCAGAACTATACCAACAT
gi|125675 : TTCCTGATATCGACATAATGAAGTGGCTATCTGACTAACAGAC-T-GA--CAGA-ACT-ATGCCACCAT-ATGTTACCATAATGAGTGAGATGTTGA-----------CA--T-AT--A------TGTTCCTGATATCGACATAATGA-A-----GT-G-GCTAT-CT-GACTAACAGGCT----GCCAGAATTATGCCACCAT
gi|125676 : TTCCTGAAATCGACATAATGAAGTGGCTATCTGACTAACAGAC-T-GA--CAGA-ACT-ATGCCAACAT-ATGTTACCATAATGAGTGAGATGTCGA-----------CA--ACAT--A------TGTTCCTGAAATCGACATAATGA-A-----GT-G-GCTAT-CT-GACTAACAGACT----GGCAGAACTATGCCACCAT
gi|125677 : TTCCTGATATCGACATAATGAAGTGGCTATCTGACTAACAGAC-T-GA--CAGA-ACT-ATGCCACCAT-ATGTTACCATAATGAGTGAGATGTCGA-----------CA--TCAA--A------TGTTCCTGAAATCGACATAATGA-A-----GT-G-GCTAT-CT-GACTAACAGACT----GACAGAACTATGCCAACAT
gi|125678 : TTCCTGATATCGACATAATGAAGTGACTATCTGACTAACAGAC-T-GA--CAGA-ACT-ATGCCACCAT-ATGTTACCATATTGAGTGAGATGTCGA-----------CA--TCAT--A------TGTTCCTGATATCGACATAATGA-A-----GT-G-GTTAT-CT-GACTAAATGACT----GGCAGAACTATGCCACCAT
gi|125679 : TTCCTGATATCGACATAATGAAGTGGCTATCTGACTAACAGGC-T-GC--CAGA-ATT-ATGCCACCAT-GTGTCACCATAATGAGTGAGATGTCGA-----------CA--TCAT--A------TGTTCCTTATATCGACATAATGA-A-----GT-G-GCTAT-CT-GACTAACAGACT----GACATAACAATGCCACCAT
gi|125680 : TTCCTGAAATCGACATAATGAAGTGGCTATCTGACTAACAGGC-T-GG--CAAA-ACT-ATGCCAATAT-ATGTTACCATAATGAGTGAGATGTGGA-----------CA--TCGT--A------TGTTCTTGATATCGACATAATGA-A-----GT-G-GCTAT-CT-GACTAACAGGCT----GGCAGAACTATGCCAACAT
gi|125681 : TTCCTGATATCGACATAATATTGTGGCTATCTGACTAACAGGC-T-GG--TAAA-ATT-ATGCCACCAT-ATGTCACCATAATGAGAGAGATGTCGA-----------CA--TCAT--A------TGTTTCTGATATCGACATAATAA-A-----AT-G-CTTAT-GT-GACTATTTGGCT----GGCAAAACTATGCCACCAT
gi|125682 : TTCCTGATATCGACATAATAAAGTGGCTATCTGACTAACAGGC-T-AG--CAGA-ACT-ATACCAACAT-GTGTCACCATAATGAGTGAGATGTCGA-----------CA--TCAT--A------TGTTCCTTATATCGACATACTGA-A-----GT-G-GCTAT-CT-GAGTAACAAACT----GACGTAACAATGCCACCAT
gi|125683 : CATAACGAGAGAAATGTCGA-----------CA--TCAT--A------C
gi|125684 : ttactgatgtcaccatacttcattgaataagtgacttatttaaCTGATGTCGACATAATGAAGTGACGAACTAACTATAAGGC-T-GG--CATA--CT-ATGCCAACAA-AAG-----ATTATGAGTGAGATGTCGA-----------CA--TCAT--G------AGTTCTTGATATCCACATAATGA-A-----GT-G-ACTAT-CT-GATTATCTGAGT----GGCAGAACTTTGCCACCAT
gi|125685 : TCACAATTATAAAT---ATGCAAA-----------AA--TAAT--A------CGTTTAGTATGTCAGCTTAA----A-----AT-G-ATTAT-GC-GACCAACAGACC----GGCAGAATTATGTCATCA
gi|125685 : tgatgccgtaatcgttgaaatatgtgaattatcaaagaatatagtgacaTAAAATGATTATGCGACCAACAGAC-C-GG--CAGA-ATT-ATGTCATCA
gi|125686 : tgatgccgtaatcgttgaaatatgtgaattatcaaagaatatagtgacatcacaattataaatatgcaaaaataatacgtttagtatgtcagctCTATCTGACTAACAGAC-T-GA--CAGA-ACT-ATGCCACCAT-ATGTTACCATAATGAGTGAGATGTCGA-----------CA--TCAA--A------TGTTCCTGAAATCGACATAATGA-A-----GT-G-GCTAG-CT-GACTAACAGACT----GGCAGAACTATGCCACCAT
gi|125687 : T-ATGTCGCCATAATGACTGAGATGTTGA-----------CA--TCAT--A------AGCTCCTGATGTCGACATCATGA-A-----GT-G-GCTAT-CT-GACTGTCATTCT----GGCAGAACTATGCCACCAT
gi|125688 : ttaattaaagaagttATGTCGA-----------CA--TAAT--ATTGTCACGTTCCTTGTGTCGGCTTAATGG-A-----GT-G-ACTAT-GT-GACTATCAGGCT----GACAAAACTATGTAACCAT
gi|125689 : aggacgctgatgtcaatatcagtaaacgcatccatactaacaCATAATGAGAGGGATGCCGA-----------CA--TCAT--G------CGTTCCTGTAGTCGACGTAATGA-G-----GT-
gi|125690 : tgatatctg-ATGTCTGCGTAATGTGTTGGATGTCGA-----------CA--TCAT--G------CGTTCCTTTTGTCAACATAATG--A-----GTGG-GATGT-C--GAC-ATCATGCT----
gi|125691 : tg-ATGTCAACATAATG--TTGGATGTCGA-----------CA--TTAT--G------TGTTTCTGATATCTGCATAATGA-G-----AG-G-G--ATGCC-GAC-ATCATGC
gi|125692 : tg-ATGTTACCATATTGAGTGAGATGTCGA-----------CA--ACAT--A------TGTTCCTGATATCGACATAATGA-A-----GT-G-GCTAT-CT-GACTAACAGACT----GACAGAACTATGCCACCAT
gi|125693 : -ATGTTACCATAATGAGTGAGATGTCGA-----------TA--TCAA--A------TGTTCCTGAAATCGACATAATGA-A-----GT-G-GCTAT-CT-GACTAACAGGCT----GGCAAAACTATGCCA
gi|125694 : TGTCAACATAATGAGTGGGATGTCGA-----------CA--TCAT--G------CTTTCCTGATGTCAACATAATG
gi|125695 : AGTGAAACGTCGAAACAACAAAACTA--TCAT--A------CGTTCATGATGTCGGCAAAATGT-A-----GT-G-ACTAT-CT-GGCTATTTGGCT----GGCAGAACTATGCCTCCAT
gi|125696 : gtcgaaacaacgacTCAATATAATGAGTGGGATGTCGA-----------CA--TCAT--G------CGTTACTGATGTCTGCGTAATGT-G-----TT-G-GATGT-C--GAC-ATCATGC
gi|125697 : CATAATGAGTGAGATGTCGA-----------AA--TCAT--A------GGTTCTTAATGTGGACATAATGA-A-----GT-G-ACTAT-CT-GACTATCAGGCT----GGCAGAACTATGTCACCAT
gi|125698 : CATAATGAGTGAGATGTCGA-----------CA--TCAT--A------CGTTCATAATGTCGAC-TAATGA-A-----AT-T-ATTAT-GT-GACTATCAGGCT----TGTAGAAATATGCCACCAT
gi|125699 : ATGTCGA-----------CA--TCAT--A------CGTTCCTGATGTCGACATAATGA-A-----G-----------T-GACTATCAGGCT----GGCAGAACTATGCCACCAT
gi|125700 : ATGTCGA-----------CA--TCAGGAA------CGT--ATGATGTCGACATAATGA-A-----GT-G-GCTAT-CT-GACTATCAGGCT----GGCAGAAATATGCAAC
gi|125701 : CCGATATCGTC--------GTGACTATATAACTAACAGAC-T-GG--AAGA-ACT-ATACCACC
gi|125702 : gatgACATAATGAAGTGGCTATCTGACTAACAGAC-T-GA--CAGA-ACT-ATGCCACCAT-
16 sequences could not be aligned to this reference sequence:
Unaligned ( gi|125650 ): AGTTAGTCACTTACAGATGTTGTCATAATCATTTGAATAAGTGACGTACTAAAGATGAT
Unaligned ( gi|125651 ): AGTTAGTCACTTACAGATGTTGTCATAATCATTTGAATAAGTGACGTACTAAAGATGAT
Unaligned ( gi|125667 ): TTAGTCACTTACGGATGTTGTCATAAGCATTTGAATAAGTGACTTACTAAAGATGATTAT
Unaligned ( gi|125652 ): AGTTAGTCACTTACGGATGTTGTCATAATCATTTGAATAAGTGACTTACGAAAGGTGATTAT
Unaligned ( gi|125653 ): AGTTAGTCACTTACGGATGTTGTCATAATCATTTGAATAAGTGACTTACGAAAGGTGATTAT
Unaligned ( gi|125664 ): GTTAGTCACTTACAGACGTTGTCATAATCATTTGAATAAGTGACTTACTAAAGGTGATTAT
Unaligned ( gi|125668 ): TAGTCACTTACAGATGTTGTCATAATCATTTGAATAAGTGACTTACCAAAGATGATTAT
Unaligned ( gi|125655 ): AGTTAGTTACTTACGGATGATGTCATAATCATTTGAATAAGTGACTTACTAAAAATGATTGTACAT
Unaligned ( gi|125656 ): AGTTAGTCACTTAGGGATGTTGTCATAATCATTTGAATAAGTGACTTACGAAAGGTGATTAT
Unaligned ( gi|125665 ): GTTAGTCACTTACTGATGTTGCCATAATCATCTGAATAAGT
Unaligned ( gi|125657 ): AATTAGTCACTTACGGATGTTGTCATAATCTTTTAAATTAGTGACTTACTAAAGATGATAATTCA
Unaligned ( gi|125658 ): AGTTAGTCACTTACGGATGATGTCATAATCATTTGAATAAGTGACTTACGAAAGGTAATTAT
Unaligned ( gi|125659 ): AGTTAGTCACTTACGAATGTTGTCTTAATCATTTGAATAAGTGACTTACTTATGATGATTAT
Unaligned ( gi|125660 ): AGTTAGTCACTTACGGATGTTCTCATAATCATTTGATCATAAGTGACTTACAAAAGGTGATTAT
Unaligned ( gi|125663 ): GTTAGTCAATTACTGCTGTTGCCATCAGTAATTTGAATACGTGACTTAATATAAACGA
Unaligned ( gi|125661 ): AGTTAGTCACTTACGGATGTTGTCATAATCATTTCAATAAG