lowQualScore : 1 2 1111 1 1111 5 0 0
lowQualScore : . . .... . .... . . .
lowQualScore : 2 1 3333 5 3333 3 6 6
consensus : TCAAGGATTTTCC-GTTAGGAGAGTGGGTG----TAGGT----CAAGGA-TTTTCC-GTTAGGA
Reference ( gi|44111 ) : TCAAGGATTTTCC-GTTAGGAAAGTGGGTG----TGGGT----CAAAGA-TTTTCC-GTTAGGA
gi|44113 : TCAAGGATTTTCT-GTTAGGAAAGTGGGTG----TGGGT----AAAAGA-TTTTTC-GTTAGGA
gi|44115 : TTAAGGATTTTCC-GTTAGGAGAGTGGGTG----TAGGT----CAAGGA-TTTTCC-GTTAGGA
gi|44112 : TCAAGGTTTTTCC-GTTAGGACAGTGGGTA----TGGGT----CAAAGA-TTTTCC-GTTAGGA
gi|44117 : TCAAGGATTTTCA-GTTAGGAAAGTGGGTG----TAGAT----CAAGGA-TTTTCC-GTTAGGA
gi|44119 : TCAAGGATTTTCC-GTTAGGAAAGTGGGTG----TGGGT----CAATGA-TTTTTT-GTTAGAA
gi|44118 : TCAAGGATTTTCC-GTTAGGAAAGTGGGTG----TGGGT----AAAATA-TTTGCC-GTTAGGA
gi|44122 : TCAATGATTTTCC-ATTAGGAGAGTGGGTG----TGGGT----TAAGGA-TTTTCC-GTTAGGA
gi|44123 : TCAAAGATTTTCC-GTTAGAAAAGTGGATG----TTGGT----CAAGGA-TTTTCC-GTTAGGA
gi|44124 : TCAAGGATTTTCC-ATTAGAAAAGTGTGTG----TGAGT----CAAAGA-TTTTCC-GTTAGAA
gi|44125 : TCAAGAATTTTCC-GTTAG-AATGTGGGTG----TGGGT----CAAAGA-TTTTCT-GTTAGGA
gi|44114 : TCAAGGATTTTCC-GT-AAGAAAGTGGGTA----TGGGT----CAAAGA-TTTTCC-GTTTGGA
gi|44116 : TCAAGGATTTTCC-ATTAGGAGAATGGGTA----TAGGT----CAAAGA-TTTTCC-GTTAAGA
gi|44126 : TCAATGATTTTTC-GTTAGGAAAGTGGGTG----TAGGT----CAAGGA-TTTTCA-GTTAGGA
gi|44127 : TCAAGGATTTTAC-GTTAGGAGAGTGGGTG----TAAGT----CAAGGA-TTTTCC-ATTAGGA
gi|44128 : TCAAAGATTTTCC-GTTAGGAAAGTTGATG----TGGGT----CAAGGA-TTTTCC-ATTAGAA
gi|44120 : TCAAGGATTTTCC-GT-AAGAAAGTGGGTA----TGGGT----CAAGGA-TTTTCC-GTTTGGA
gi|44129 : TTAAGGTTTTTCC-GTTAGGACAGTGGGTG----TGGGT----CAAGGT-TTTTCC-GTTAGGA
gi|44121 : TCAATGATTTTCC-GTTAGGAAAGTGGTTA----TGGGT----CATGGA-TTTTCC-GTTAGGA
gi|44130 : TCAAGGATTTTCC-GTTAGGAAAGTGAGTG----TAGCT----CAAGGA-TTTTCC-GTAAGAA
gi|44132 : TCAAGGATTTTCC-CTTAGGAGAATGGGTG----TAGGT----CAAGGA-TTTTCC-GTCAG
gi|44134 : TCAAGGATTTTCC-GTAAGGAGAATGGTTG----TAGGT----CAAGGA-TTTTCC-GTTAGG
gi|44133 : TCAAGGTTTTTCC-GTTAGGACAGTGAGTG----TAGGT----CAAGGA-TTTTCC-GTAAGGA
gi|44135 : TCAAGGATTTTCC-GTAATGATAGTGGGTG----TAGGT----CAAGGA-TTTTCC-GTTAGAA
gi|44136 : TCAAGGATTTTCC-GTTTGGAGAGTGGATG----TAGGT----CAAGGA-TCTTCC-GTTTGGA
gi|44140 : TCAAAGATTTTCT-GTTAGGAAAGTGGGTG----TGGGT----CATGGA-TTTTCC-
gi|44139 : TCAAGGATTTTCC-GTTAGAAGAGTGAGTG----TAGGT----CAATCA-TTTTCC-ATTAGGA
gi|44138 : TCAATGATTTTTT-GTTAGAAAAGTGGGTG----TGGGT----CAAGGA-TTTTCC-GT
gi|44137 : TCAAGGTTTTTCC-GTTAGGACAGGGGGTG----TAGGT----CAAGGA-TTTTCC-CTTAGGA
gi|44142 : TCAAGGATCTTCC-GTTTGGAGAGTGGGTG----TAGGT----CAAGTA-TTTTAC-GTTAGGA
gi|44144 : TCAAGGATTTTCC-GTTAGGAGAATGAGTG----TATGT----CAAGGATTTTTCT-GTTAGGA
gi|44143 : TCAAGGATTTTCC-GTTAGGTGAGTGGGTG----CAAGT----CAAGTA-TTTTTC-GTTAGGA
gi|44145 : TCAAGGATTTTCC-GTTGGGAGAGTTTTTG----TGGGT----CAAGGA-TTTTAC-GTTAGGA
gi|44147 : TCAAGGATTTTCC-GTTAGGAGAGTGAGTG----TAGGT----CAATCA-TTTTTC-ATTAG
gi|44146 : TCAAAGATTTTCC-GTTAGGA--GTACGTG----TGGGT----CAAGGT-TTTTCC-GTTAGGA
gi|44131 : TCAAGGATTTTCC-GT-AAGAAAGTGGGTA----TGGGT----CAAGGA-TATTCC-GTAAG
gi|44141 : TCAAGGATATTCC-GT-AAGAGAGTGGGTA----TAGGT----CAAGGA-TTTTCC-GTTTGGA
gi|44151 : TCAAGTATTTTAC-GTTAGGAGAGTGGATG----TAGGT----CAATGA-TTTTCC-ATTA
gi|44150 : TCAATGAGTATCC-ATTAGAAGAGTGGGTG----TAGGT----CAATGA-TTTTCC-GTTAGGA
gi|44149 : TCAAGTATTTTTC-GTTAGGA--GTAGGTG----TGGGT----TAAGGT-TTTTCC-GTTAGGA
gi|44152 : TTAAGGATTTTAA-GTTAGGAAAGTGGATG----TGGGT----AAAAG--TTTTCCAGTTAGGA
gi|44153 : TCAAAGATTTTCC-GTTAAGAGAGTGGGTG----TAGGT----CAAGGA-TTTT---GTTATGA
gi|44154 : TCAAAGATTTTCC-GTTTGGAGAGTGGGTG----TAGGT----CAAGTC-TTTTCC-ATTAGAA
gi|44157 : TCAATGATTTTCC-ATTATGGGAGTGGGTG----TAGAT----CAATGA-TTTTTC-GTTAGGA
gi|44156 : TCAATGAATTTTC-ATTAGGAGAATTGGTG----TAGGT----CAAGGA-TTTTCC-GTTAGGA
gi|44155 : TCAAGTTTTTTCC-GTTAAGAGAGTGGGTG----TAGGT----CAATGA-CTTTCC-ATTGGGA
gi|44158 : TCAAAGTTATTCC-ATTAG--AAGTGGGTG----TAGGT----CAAGGA-TTTTCC-GTTGGGA
gi|44159 : TCAATGATTTTCC-ATAAGAAGAGTGGGTG----TTGCT----CAAGGA-TTTTCT-GTTAGGA
gi|44148 : TCAAGGATTTTCC-GT-AAGAAAGTATGTA----TGGAT----CAAGGA-TTTTCC-GTAAGAA
gi|44160 : TCAAGGATTTTCT-GTTAGG--AGTGGGTG----T-GGT----CAAGTT-TTTTCC-GTTAAGA
gi|44161 : TTAATGATTTTCA-ATTCGGAGAGTGGGTG----TTGCT----CAAGGA-TTTTCC-GTTAGGA
gi|44162 : TCATGGATTTTCC-GTTAGGAGAGTAGGTG----TAGGT----CNNNNN-NNNNNC-ATTAGGA
gi|44164 : TCAAGGATTTT---GTTAGGAGAGTGAGTG----TAGGT----CAATGA-TTTTCC-ATAAGAA
gi|44165 : TCAAGGATTTTTCTGTTAGGAGAATAGGTG----TAGGT----CAATTA-ATTTCC-GTTAAGA
gi|44166 : TCAAGGATTTTCC-GTCAGATGAATAGGTG----CAAAT----CAAGGA-TTTTCT-GTTAGGA
gi|44168 : TCAATGACTTTCC-ATTGGGAAAGATGGTG----TGGGT----CAAAGT-TATTCC-ATTAGAA
gi|44170 : TCAAGGATTTTCC-GTTTGGAGAG-GGGTG----AAGGT----CAAGGA-TTTT---GTTAAGA
gi|44167 : TTAAGGATTTTCA-ATCAGGAGAATGGGTGTAAATAAGT----CAAGGT-TTTTCC-GTTAGGA
gi|44163 : TCNNNNNNNNNNC-ATTAGGAGAGTGGATA----TAGGT----CAATGA-TTTTCC-ATTAGGA
gi|44169 : TCATGGATTTTCC-TGTATAAAAGTGGGTA----TGGGTCAGGCAGGGA-GTTTCC-GTTAAGA
gi|44171 : CAGGGAGTTTCC-GTTAAGAGAGTGGGTG----TAGGT----CAAGGA-TTTTCC-GTTAGGA
gi|44172 : AAAGATTTTTC-GTTAGGAAACTTGGTG----TAGGT----CAAGGA-TTTTCC-GTAAGAA
gi|44173 : GGATTTTCC-GT-AAGAAAGTGGGTA----TGGGT----CAAGGA-TTTT---GTTAGGA
gi|44174 : TTTTCCAGTTAGGAAAGTGGGTA----TGAGT----CAAGGA-TTTTCC-GTAAGAA
gi|44175 : TTTCC-GTTAAGAAAGTGGGTG----T-GGT----CAAGGA-TTTCCC-GCTA
gi|44140 : T----CAAAGA-TTTTCT-GTTAGGA
Alignments
lowQualScore : 1 1111 1111 0 0
lowQualScore : . .... .... . .
lowQualScore : 2 3333 3333 6 6
consensus : TCAAGGATTTTCC-GTTAGGAGAGTGGGTG----TAGGT----CAAGGA-TTTTCC-GTTAGGA
Reference ( family-401 ) : TCAAGGATTTTCC-GTTAGGAGAGTGGGTG----TAGGT----CAAGGA-TTTTCC-GTTAGGA
gi|44111 : TCAAGGATTTTCC-GTTAGGAAAGTGGGTG----TGGGT----CAAAGA-TTTTCC-GTTAGGA
gi|44112 : TCAAGGTTTTTCC-GTTAGGACAGTGGGTA----TGGGT----CAAAGA-TTTTCC-GTTAGGA
gi|44113 : TCAAGGATTTTCT-GTTAGGAAAGTGGGTG----TGGGT----AAAAGA-TTTTTC-GTTAGGA
gi|44114 : TCAAGGATTTTCC-GT-AAGAAAGTGGGTA----TGGGT----CAAAGA-TTTTCC-GTTTGGA
gi|44115 : TTAAGGATTTTCC-GTTAGGAGAGTGGGTG----TAGGT----CAAGGA-TTTTCC-GTTAGGA
gi|44116 : TCAAGGATTTTCC-ATTAGGAGAATGGGTA----TAGGT----CAAAGA-TTTTCC-GTTAAGA
gi|44117 : TCAAGGATTTTCA-GTTAGGAAAGTGGGTG----TAGAT----CAAGGA-TTTTCC-GTTAGGA
gi|44118 : TCAAGGATTTTCC-GTTAGGAAAGTGGGTG----TGGGT----AAAATA-TTTGCC-GTTAGGA
gi|44119 : TCAAGGATTTTCC-GTTAGGAAAGTGGGTG----TGGGT----CAATGA-TTTTTT-GTTAGAA
gi|44120 : TCAAGGATTTTCC-GT-AAGAAAGTGGGTA----TGGGT----CAAGGA-TTTTCC-GTTTGGA
gi|44121 : TCAATGATTTTCC-GTTAGGAAAGTGGTTA----TGGGT----CATGGA-TTTTCC-GTTAGGA
gi|44122 : TCAATGATTTTCC-ATTAGGAGAGTGGGTG----TGGGT----TAAGGA-TTTTCC-GTTAGGA
gi|44123 : TCAAAGATTTTCC-GTTAGAAAAGTGGATG----TTGGT----CAAGGA-TTTTCC-GTTAGGA
gi|44124 : TCAAGGATTTTCC-ATTAGAAAAGTGTGTG----TGAGT----CAAAGA-TTTTCC-GTTAGAA
gi|44125 : TCAAGAATTTTCC-GTTAGAAT-GTGGGTG----TGGGT----CAAAGA-TTTTCT-GTTAGGA
gi|44126 : TCAATGATTTTTC-GTTAGGAAAGTGGGTG----TAGGT----CAAGGA-TTTTCA-GTTAGGA
gi|44127 : TCAAGGATTTTAC-GTTAGGAGAGTGGGTG----TAAGT----CAAGGA-TTTTCC-ATTAGGA
gi|44128 : TCAAAGATTTTCC-GTTAGGAAAGTTGATG----TGGGT----CAAGGA-TTTTCC-ATTAGAA
gi|44129 : TTAAGGTTTTTCC-GTTAGGACAGTGGGTG----TGGGT----CAAGGT-TTTTCC-GTTAGGA
gi|44130 : TCAAGGATTTTCC-GTTAGGAAAGTGAGTG----TAGCT----CAAGGA-TTTTCC-GTAAGAA
gi|44131 : TCAAGGATTTTCC-GT-AAGAAAGTGGGTA----TGGGT----CAAGGA-TATTCC-GTAAG
gi|44132 : TCAAGGATTTTCC-CTTAGGAGAATGGGTG----TAGGT----CAAGGA-TTTTCC-GTCAG
gi|44133 : TCAAGGTTTTTCC-GTTAGGACAGTGAGTG----TAGGT----CAAGGA-TTTTCC-GTAAGGA
gi|44134 : TCAAGGATTTTCC-GTAAGGAGAATGGTTG----TAGGT----CAAGGA-TTTTCC-GTTAGG
gi|44135 : TCAAGGATTTTCC-GTAATGATAGTGGGTG----TAGGT----CAAGGA-TTTTCC-GTTAGAA
gi|44136 : TCAAGGATTTTCC-GTTTGGAGAGTGGATG----TAGGT----CAAGGA-TCTTCC-GTTTGGA
gi|44137 : TCAAGGTTTTTCC-GTTAGGACAGGGGGTG----TAGGT----CAAGGA-TTTTCC-CTTAGGA
gi|44138 : TCAATGATTTTTT-GTTAGAAAAGTGGGTG----TGGGT----CAAGGA-TTTTCC-GT
gi|44139 : TCAAGGATTTTCC-GTTAGAAGAGTGAGTG----TAGGT----CAATCA-TTTTCC-ATTAGGA
gi|44140 : TCAAAGATTTTCT-GTTAGGAAAGTGGGTG----TGGGT----CATGGA-TTTTCC-
gi|44141 : TCAAGGATATTCC-GT-AAGAGAGTGGGTA----TAGGT----CAAGGA-TTTTCC-GTTTGGA
gi|44142 : TCAAGGATCTTCC-GTTTGGAGAGTGGGTG----TAGGT----CAAGTA-TTTTAC-GTTAGGA
gi|44143 : TCAAGGATTTTCC-GTTAGGTGAGTGGGTG----CAAGT----CAAGTA-TTTTTC-GTTAGGA
gi|44144 : TCAAGGATTTTCC-GTTAGGAGAATGAGTG----TATGT----CAAGGATTTTTCT-GTTAGGA
gi|44145 : TCAAGGATTTTCC-GTTGGGAGAGTTTTTG----TGGGT----CAAGGA-TTTTAC-GTTAGGA
gi|44146 : TCAAAGATTTTCC-GTTAGGAG--TACGTG----TGGGT----CAAGGT-TTTTCC-GTTAGGA
gi|44147 : TCAAGGATTTTCC-GTTAGGAGAGTGAGTG----TAGGT----CAATCA-TTTTTC-ATTAG
gi|44148 : TCAAGGATTTTCC-GT-AAGAAAGTATGTA----TGGAT----CAAGGA-TTTTCC-GTAAGAA
gi|44149 : TCAAGTATTTTTC-GTTAGGAG--TAGGTG----TGGGT----TAAGGT-TTTTCC-GTTAGGA
gi|44150 : TCAATGAGTATCC-ATTAGAAGAGTGGGTG----TAGGT----CAATGA-TTTTCC-GTTAGGA
gi|44151 : TCAAGTATTTTAC-GTTAGGAGAGTGGATG----TAGGT----CAATGA-TTTTCC-ATTA
gi|44152 : TTAAGGATTTTAA-GTTAGGAAAGTGGATG----TGGGT----AAAAG--TTTTCCAGTTAGGA
gi|44153 : TCAAAGATTTTCC-GTTAAGAGAGTGGGTG----TAGGT----CAAGGA-TTTT---GTTATGA
gi|44154 : TCAAAGATTTTCC-GTTTGGAGAGTGGGTG----TAGGT----CAAGTC-TTTTCC-ATTAGAA
gi|44155 : TCAAGTTTTTTCC-GTTAAGAGAGTGGGTG----TAGGT----CAATGA-CTTTCC-ATTGGGA
gi|44156 : TCAATGAATTTTC-ATTAGGAGAATTGGTG----TAGGT----CAAGGA-TTTTCC-GTTAGGA
gi|44157 : TCAATGATTTTCC-ATTATGGGAGTGGGTG----TAGAT----CAATGA-TTTTTC-GTTAGGA
gi|44158 : TCAAAGTTATTCC-ATTAGAAG--TGGGTG----TAGGT----CAAGGA-TTTTCC-GTTGGGA
gi|44159 : TCAATGATTTTCC-ATAAGAAGAGTGGGTG----TTGCT----CAAGGA-TTTTCT-GTTAGGA
gi|44160 : TCAAGGATTTTCT-GTTAG--GAGTGGGTG----T-GGT----CAAGTT-TTTTCC-GTTAAGA
gi|44161 : TTAATGATTTTCA-ATTCGGAGAGTGGGTG----TTGCT----CAAGGA-TTTTCC-GTTAGGA
gi|44162 : TCATGGATTTTCC-GTTAGGAGAGTAGGTG----TAGGT----CNNNNN-NNNNNC-ATTAGGA
gi|44163 : TCNNNNNNNNNNC-ATTAGGAGAGTGGATA----TAGGT----CAATGA-TTTTCC-ATTAGGA
gi|44164 : TCAAGGATTTT---GTTAGGAGAGTGAGTG----TAGGT----CAATGA-TTTTCC-ATAAGAA
gi|44165 : TCAAGGATTTTTCTGTTAGGAGAATAGGTG----TAGGT----CAATTA-ATTTCC-GTTAAGA
gi|44166 : TCAAGGATTTTCC-GTCAGATGAATAGGTG----CAAAT----CAAGGA-TTTTCT-GTTAGGA
gi|44167 : TTAAGGATTTTCA-ATCAGGAGAATGGGTGTAAATAAGT----CAAGGT-TTTTCC-GTTAGGA
gi|44169 : TCATGGATTTTCC-TGTATAAAAGTGGGTA----TGGGTCAGGCAGGGA-GTTTCC-GTTAAGA
gi|44170 : TCAAGGATTTTCC-GTTTGGAGAG-GGGTG----AAGGT----CAAGGA-TTTT---GTTAAGA
gi|44171 : CAGGGAGTTTCC-GTTAAGAGAGTGGGTG----TAGGT----CAAGGA-TTTTCC-GTTAGGA
gi|44172 : AAAGATTTTTC-GTTAGGAAACTTGGTG----TAGGT----CAAGGA-TTTTCC-GTAAGAA
gi|44173 : GGATTTTCC-GT-AAGAAAGTGGGTA----TGGGT----CAAGGA-TTTT---GTTAGGA
gi|44174 : TTTTCCAGTTAGGAAAGTGGGTA----TGAGT----CAAGGA-TTTTCC-GTAAGAA
gi|44175 : TTTCC-GTTAAGAAAGTGGGTG----T-GGT----CAAGGA-TTTCCC-GCTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|44168 ): TCAATGACTTTCCATTGGGAAAGATGGTGTGGGTCAAAGTTATTCCATTAGAA
Alignments
lowQualScore : 1 1111 1111 0 0
lowQualScore : . .... .... . .
lowQualScore : 2 3333 3333 6 6
consensus : TCAAGGATTTTCC-GTTAGGAGAGTGGGTG----TAGGT----CAAGGA-TTTTCC-GTTAGGA
Reference ( family-401 ) : TCAAGGATTTTCC-GTTAGGAGAGTGGGTG----TAGGT----CAAGGA-TTTTCC-GTTAGGA
gi|44111 : TCAAGGATTTTCC-GTTAGGAAAGTGGGTG----TGGGT----CAAAGA-TTTTCC-GTTAGGA
gi|44112 : TCAAGGTTTTTCC-GTTAGGACAGTGGGTA----TGGGT----CAAAGA-TTTTCC-GTTAGGA
gi|44113 : TCAAGGATTTTCT-GTTAGGAAAGTGGGTG----TGGGT----AAAAGA-TTTTTC-GTTAGGA
gi|44114 : TCAAGGATTTTCC-GT-AAGAAAGTGGGTA----TGGGT----CAAAGA-TTTTCC-GTTTGGA
gi|44115 : TTAAGGATTTTCC-GTTAGGAGAGTGGGTG----TAGGT----CAAGGA-TTTTCC-GTTAGGA
gi|44116 : TCAAGGATTTTCC-ATTAGGAGAATGGGTA----TAGGT----CAAAGA-TTTTCC-GTTAAGA
gi|44117 : TCAAGGATTTTCA-GTTAGGAAAGTGGGTG----TAGAT----CAAGGA-TTTTCC-GTTAGGA
gi|44118 : TCAAGGATTTTCC-GTTAGGAAAGTGGGTG----TGGGT----AAAATA-TTTGCC-GTTAGGA
gi|44119 : TCAAGGATTTTCC-GTTAGGAAAGTGGGTG----TGGGT----CAATGA-TTTTTT-GTTAGAA
gi|44120 : TCAAGGATTTTCC-GT-AAGAAAGTGGGTA----TGGGT----CAAGGA-TTTTCC-GTTTGGA
gi|44121 : TCAATGATTTTCC-GTTAGGAAAGTGGTTA----TGGGT----CATGGA-TTTTCC-GTTAGGA
gi|44122 : TCAATGATTTTCC-ATTAGGAGAGTGGGTG----TGGGT----TAAGGA-TTTTCC-GTTAGGA
gi|44123 : TCAAAGATTTTCC-GTTAGAAAAGTGGATG----TTGGT----CAAGGA-TTTTCC-GTTAGGA
gi|44124 : TCAAGGATTTTCC-ATTAGAAAAGTGTGTG----TGAGT----CAAAGA-TTTTCC-GTTAGAA
gi|44125 : TCAAGAATTTTCC-GTTAGAAT-GTGGGTG----TGGGT----CAAAGA-TTTTCT-GTTAGGA
gi|44126 : TCAATGATTTTTC-GTTAGGAAAGTGGGTG----TAGGT----CAAGGA-TTTTCA-GTTAGGA
gi|44127 : TCAAGGATTTTAC-GTTAGGAGAGTGGGTG----TAAGT----CAAGGA-TTTTCC-ATTAGGA
gi|44128 : TCAAAGATTTTCC-GTTAGGAAAGTTGATG----TGGGT----CAAGGA-TTTTCC-ATTAGAA
gi|44129 : TTAAGGTTTTTCC-GTTAGGACAGTGGGTG----TGGGT----CAAGGT-TTTTCC-GTTAGGA
gi|44130 : TCAAGGATTTTCC-GTTAGGAAAGTGAGTG----TAGCT----CAAGGA-TTTTCC-GTAAGAA
gi|44131 : TCAAGGATTTTCC-GT-AAGAAAGTGGGTA----TGGGT----CAAGGA-TATTCC-GTAAG
gi|44132 : TCAAGGATTTTCC-CTTAGGAGAATGGGTG----TAGGT----CAAGGA-TTTTCC-GTCAG
gi|44133 : TCAAGGTTTTTCC-GTTAGGACAGTGAGTG----TAGGT----CAAGGA-TTTTCC-GTAAGGA
gi|44134 : TCAAGGATTTTCC-GTAAGGAGAATGGTTG----TAGGT----CAAGGA-TTTTCC-GTTAGG
gi|44135 : TCAAGGATTTTCC-GTAATGATAGTGGGTG----TAGGT----CAAGGA-TTTTCC-GTTAGAA
gi|44136 : TCAAGGATTTTCC-GTTTGGAGAGTGGATG----TAGGT----CAAGGA-TCTTCC-GTTTGGA
gi|44137 : TCAAGGTTTTTCC-GTTAGGACAGGGGGTG----TAGGT----CAAGGA-TTTTCC-CTTAGGA
gi|44138 : TCAATGATTTTTT-GTTAGAAAAGTGGGTG----TGGGT----CAAGGA-TTTTCC-GT
gi|44139 : TCAAGGATTTTCC-GTTAGAAGAGTGAGTG----TAGGT----CAATCA-TTTTCC-ATTAGGA
gi|44140 : TCAAAGATTTTCT-GTTAGGAAAGTGGGTG----TGGGT----CATGGA-TTTTCC-
gi|44141 : TCAAGGATATTCC-GT-AAGAGAGTGGGTA----TAGGT----CAAGGA-TTTTCC-GTTTGGA
gi|44142 : TCAAGGATCTTCC-GTTTGGAGAGTGGGTG----TAGGT----CAAGTA-TTTTAC-GTTAGGA
gi|44143 : TCAAGGATTTTCC-GTTAGGTGAGTGGGTG----CAAGT----CAAGTA-TTTTTC-GTTAGGA
gi|44144 : TCAAGGATTTTCC-GTTAGGAGAATGAGTG----TATGT----CAAGGATTTTTCT-GTTAGGA
gi|44145 : TCAAGGATTTTCC-GTTGGGAGAGTTTTTG----TGGGT----CAAGGA-TTTTAC-GTTAGGA
gi|44146 : TCAAAGATTTTCC-GTTAGGAG--TACGTG----TGGGT----CAAGGT-TTTTCC-GTTAGGA
gi|44147 : TCAAGGATTTTCC-GTTAGGAGAGTGAGTG----TAGGT----CAATCA-TTTTTC-ATTAG
gi|44148 : TCAAGGATTTTCC-GT-AAGAAAGTATGTA----TGGAT----CAAGGA-TTTTCC-GTAAGAA
gi|44149 : TCAAGTATTTTTC-GTTAGGAG--TAGGTG----TGGGT----TAAGGT-TTTTCC-GTTAGGA
gi|44150 : TCAATGAGTATCC-ATTAGAAGAGTGGGTG----TAGGT----CAATGA-TTTTCC-GTTAGGA
gi|44151 : TCAAGTATTTTAC-GTTAGGAGAGTGGATG----TAGGT----CAATGA-TTTTCC-ATTA
gi|44152 : TTAAGGATTTTAA-GTTAGGAAAGTGGATG----TGGGT----AAAAG--TTTTCCAGTTAGGA
gi|44153 : TCAAAGATTTTCC-GTTAAGAGAGTGGGTG----TAGGT----CAAGGA-TTTT---GTTATGA
gi|44154 : TCAAAGATTTTCC-GTTTGGAGAGTGGGTG----TAGGT----CAAGTC-TTTTCC-ATTAGAA
gi|44155 : TCAAGTTTTTTCC-GTTAAGAGAGTGGGTG----TAGGT----CAATGA-CTTTCC-ATTGGGA
gi|44156 : TCAATGAATTTTC-ATTAGGAGAATTGGTG----TAGGT----CAAGGA-TTTTCC-GTTAGGA
gi|44157 : TCAATGATTTTCC-ATTATGGGAGTGGGTG----TAGAT----CAATGA-TTTTTC-GTTAGGA
gi|44158 : TCAAAGTTATTCC-ATTAGAAG--TGGGTG----TAGGT----CAAGGA-TTTTCC-GTTGGGA
gi|44159 : TCAATGATTTTCC-ATAAGAAGAGTGGGTG----TTGCT----CAAGGA-TTTTCT-GTTAGGA
gi|44160 : TCAAGGATTTTCT-GTTAG--GAGTGGGTG----T-GGT----CAAGTT-TTTTCC-GTTAAGA
gi|44161 : TTAATGATTTTCA-ATTCGGAGAGTGGGTG----TTGCT----CAAGGA-TTTTCC-GTTAGGA
gi|44162 : TCATGGATTTTCC-GTTAGGAGAGTAGGTG----TAGGT----CNNNNN-NNNNNC-ATTAGGA
gi|44163 : TCNNNNNNNNNNC-ATTAGGAGAGTGGATA----TAGGT----CAATGA-TTTTCC-ATTAGGA
gi|44164 : TCAAGGATTTT---GTTAGGAGAGTGAGTG----TAGGT----CAATGA-TTTTCC-ATAAGAA
gi|44165 : TCAAGGATTTTTCTGTTAGGAGAATAGGTG----TAGGT----CAATTA-ATTTCC-GTTAAGA
gi|44166 : TCAAGGATTTTCC-GTCAGATGAATAGGTG----CAAAT----CAAGGA-TTTTCT-GTTAGGA
gi|44167 : TTAAGGATTTTCA-ATCAGGAGAATGGGTGTAAATAAGT----CAAGGT-TTTTCC-GTTAGGA
gi|44169 : TCATGGATTTTCC-TGTATAAAAGTGGGTA----TGGGTCAGGCAGGGA-GTTTCC-GTTAAGA
gi|44170 : TCAAGGATTTTCC-GTTTGGAGAG-GGGTG----AAGGT----CAAGGA-TTTT---GTTAAGA
gi|44171 : CAGGGAGTTTCC-GTTAAGAGAGTGGGTG----TAGGT----CAAGGA-TTTTCC-GTTAGGA
gi|44172 : AAAGATTTTTC-GTTAGGAAACTTGGTG----TAGGT----CAAGGA-TTTTCC-GTAAGAA
gi|44173 : GGATTTTCC-GT-AAGAAAGTGGGTA----TGGGT----CAAGGA-TTTT---GTTAGGA
gi|44174 : TTTTCCAGTTAGGAAAGTGGGTA----TGAGT----CAAGGA-TTTTCC-GTAAGAA
gi|44175 : TTTCC-GTTAAGAAAGTGGGTG----T-GGT----CAAGGA-TTTCCC-GCTA
blockSeqs : T TAAA CAGG
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blockSeqCons :
originalCons : TCAAGGATTTTCC-GTTAGGAGAGTGGGTG----TAGGT----CAAGGA-TTTTCC-GTTAGGA
finalCons : TCAAGGATTTTCC-GTTAGGAGAGTGGGTG----TAGGT----CAAGGA-TTTTCC-GTTAGGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|44168 ): TCAATGACTTTCCATTGGGAAAGATGGTGTGGGTCAAAGTTATTCCATTAGAA
Alignments
lowQualScore : 1 1111 1111 0 0
lowQualScore : . .... .... . .
lowQualScore : 2 3333 3333 6 6
consensus : TCAAGGATTTTCC-GTTAGGAGAGTGGGTG----TAGGT----CAAGGA-TTTTCC-GTTAGGA
Reference ( family-401 ) : TCAAGGATTTTCC-GTTAGGAGAGTGGGTG----TAGGT----CAAGGA-TTTTCC-GTTAGGA
gi|44111 : TCAAGGATTTTCC-GTTAGGAAAGTGGGTG----TGGGT----CAAAGA-TTTTCC-GTTAGGA
gi|44112 : TCAAGGTTTTTCC-GTTAGGACAGTGGGTA----TGGGT----CAAAGA-TTTTCC-GTTAGGA
gi|44113 : TCAAGGATTTTCT-GTTAGGAAAGTGGGTG----TGGGT----AAAAGA-TTTTTC-GTTAGGA
gi|44114 : TCAAGGATTTTCC-GT-AAGAAAGTGGGTA----TGGGT----CAAAGA-TTTTCC-GTTTGGA
gi|44115 : TTAAGGATTTTCC-GTTAGGAGAGTGGGTG----TAGGT----CAAGGA-TTTTCC-GTTAGGA
gi|44116 : TCAAGGATTTTCC-ATTAGGAGAATGGGTA----TAGGT----CAAAGA-TTTTCC-GTTAAGA
gi|44117 : TCAAGGATTTTCA-GTTAGGAAAGTGGGTG----TAGAT----CAAGGA-TTTTCC-GTTAGGA
gi|44118 : TCAAGGATTTTCC-GTTAGGAAAGTGGGTG----TGGGT----AAAATA-TTTGCC-GTTAGGA
gi|44119 : TCAAGGATTTTCC-GTTAGGAAAGTGGGTG----TGGGT----CAATGA-TTTTTT-GTTAGAA
gi|44120 : TCAAGGATTTTCC-GT-AAGAAAGTGGGTA----TGGGT----CAAGGA-TTTTCC-GTTTGGA
gi|44121 : TCAATGATTTTCC-GTTAGGAAAGTGGTTA----TGGGT----CATGGA-TTTTCC-GTTAGGA
gi|44122 : TCAATGATTTTCC-ATTAGGAGAGTGGGTG----TGGGT----TAAGGA-TTTTCC-GTTAGGA
gi|44123 : TCAAAGATTTTCC-GTTAGAAAAGTGGATG----TTGGT----CAAGGA-TTTTCC-GTTAGGA
gi|44124 : TCAAGGATTTTCC-ATTAGAAAAGTGTGTG----TGAGT----CAAAGA-TTTTCC-GTTAGAA
gi|44125 : TCAAGAATTTTCC-GTTAGAAT-GTGGGTG----TGGGT----CAAAGA-TTTTCT-GTTAGGA
gi|44126 : TCAATGATTTTTC-GTTAGGAAAGTGGGTG----TAGGT----CAAGGA-TTTTCA-GTTAGGA
gi|44127 : TCAAGGATTTTAC-GTTAGGAGAGTGGGTG----TAAGT----CAAGGA-TTTTCC-ATTAGGA
gi|44128 : TCAAAGATTTTCC-GTTAGGAAAGTTGATG----TGGGT----CAAGGA-TTTTCC-ATTAGAA
gi|44129 : TTAAGGTTTTTCC-GTTAGGACAGTGGGTG----TGGGT----CAAGGT-TTTTCC-GTTAGGA
gi|44130 : TCAAGGATTTTCC-GTTAGGAAAGTGAGTG----TAGCT----CAAGGA-TTTTCC-GTAAGAA
gi|44131 : TCAAGGATTTTCC-GT-AAGAAAGTGGGTA----TGGGT----CAAGGA-TATTCC-GTAAG
gi|44132 : TCAAGGATTTTCC-CTTAGGAGAATGGGTG----TAGGT----CAAGGA-TTTTCC-GTCAG
gi|44133 : TCAAGGTTTTTCC-GTTAGGACAGTGAGTG----TAGGT----CAAGGA-TTTTCC-GTAAGGA
gi|44134 : TCAAGGATTTTCC-GTAAGGAGAATGGTTG----TAGGT----CAAGGA-TTTTCC-GTTAGG
gi|44135 : TCAAGGATTTTCC-GTAATGATAGTGGGTG----TAGGT----CAAGGA-TTTTCC-GTTAGAA
gi|44136 : TCAAGGATTTTCC-GTTTGGAGAGTGGATG----TAGGT----CAAGGA-TCTTCC-GTTTGGA
gi|44137 : TCAAGGTTTTTCC-GTTAGGACAGGGGGTG----TAGGT----CAAGGA-TTTTCC-CTTAGGA
gi|44138 : TCAATGATTTTTT-GTTAGAAAAGTGGGTG----TGGGT----CAAGGA-TTTTCC-GT
gi|44139 : TCAAGGATTTTCC-GTTAGAAGAGTGAGTG----TAGGT----CAATCA-TTTTCC-ATTAGGA
gi|44140 : TCAAAGATTTTCT-GTTAGGAAAGTGGGTG----TGGGT----CATGGA-TTTTCC-
gi|44141 : TCAAGGATATTCC-GT-AAGAGAGTGGGTA----TAGGT----CAAGGA-TTTTCC-GTTTGGA
gi|44142 : TCAAGGATCTTCC-GTTTGGAGAGTGGGTG----TAGGT----CAAGTA-TTTTAC-GTTAGGA
gi|44143 : TCAAGGATTTTCC-GTTAGGTGAGTGGGTG----CAAGT----CAAGTA-TTTTTC-GTTAGGA
gi|44144 : TCAAGGATTTTCC-GTTAGGAGAATGAGTG----TATGT----CAAGGATTTTTCT-GTTAGGA
gi|44145 : TCAAGGATTTTCC-GTTGGGAGAGTTTTTG----TGGGT----CAAGGA-TTTTAC-GTTAGGA
gi|44146 : TCAAAGATTTTCC-GTTAGGAG--TACGTG----TGGGT----CAAGGT-TTTTCC-GTTAGGA
gi|44147 : TCAAGGATTTTCC-GTTAGGAGAGTGAGTG----TAGGT----CAATCA-TTTTTC-ATTAG
gi|44148 : TCAAGGATTTTCC-GT-AAGAAAGTATGTA----TGGAT----CAAGGA-TTTTCC-GTAAGAA
gi|44149 : TCAAGTATTTTTC-GTTAGGAG--TAGGTG----TGGGT----TAAGGT-TTTTCC-GTTAGGA
gi|44150 : TCAATGAGTATCC-ATTAGAAGAGTGGGTG----TAGGT----CAATGA-TTTTCC-GTTAGGA
gi|44151 : TCAAGTATTTTAC-GTTAGGAGAGTGGATG----TAGGT----CAATGA-TTTTCC-ATTA
gi|44152 : TTAAGGATTTTAA-GTTAGGAAAGTGGATG----TGGGT----AAAAG--TTTTCCAGTTAGGA
gi|44153 : TCAAAGATTTTCC-GTTAAGAGAGTGGGTG----TAGGT----CAAGGA-TTTT---GTTATGA
gi|44154 : TCAAAGATTTTCC-GTTTGGAGAGTGGGTG----TAGGT----CAAGTC-TTTTCC-ATTAGAA
gi|44155 : TCAAGTTTTTTCC-GTTAAGAGAGTGGGTG----TAGGT----CAATGA-CTTTCC-ATTGGGA
gi|44156 : TCAATGAATTTTC-ATTAGGAGAATTGGTG----TAGGT----CAAGGA-TTTTCC-GTTAGGA
gi|44157 : TCAATGATTTTCC-ATTATGGGAGTGGGTG----TAGAT----CAATGA-TTTTTC-GTTAGGA
gi|44158 : TCAAAGTTATTCC-ATTAGAAG--TGGGTG----TAGGT----CAAGGA-TTTTCC-GTTGGGA
gi|44159 : TCAATGATTTTCC-ATAAGAAGAGTGGGTG----TTGCT----CAAGGA-TTTTCT-GTTAGGA
gi|44160 : TCAAGGATTTTCT-GTTAG--GAGTGGGTG----T-GGT----CAAGTT-TTTTCC-GTTAAGA
gi|44161 : TTAATGATTTTCA-ATTCGGAGAGTGGGTG----TTGCT----CAAGGA-TTTTCC-GTTAGGA
gi|44162 : TCATGGATTTTCC-GTTAGGAGAGTAGGTG----TAGGT----CNNNNN-NNNNNC-ATTAGGA
gi|44163 : TCNNNNNNNNNNC-ATTAGGAGAGTGGATA----TAGGT----CAATGA-TTTTCC-ATTAGGA
gi|44164 : TCAAGGATTTT---GTTAGGAGAGTGAGTG----TAGGT----CAATGA-TTTTCC-ATAAGAA
gi|44165 : TCAAGGATTTTTCTGTTAGGAGAATAGGTG----TAGGT----CAATTA-ATTTCC-GTTAAGA
gi|44166 : TCAAGGATTTTCC-GTCAGATGAATAGGTG----CAAAT----CAAGGA-TTTTCT-GTTAGGA
gi|44167 : TTAAGGATTTTCA-ATCAGGAGAATGGGTGTAAATAAGT----CAAGGT-TTTTCC-GTTAGGA
gi|44169 : TCATGGATTTTCC-TGTATAAAAGTGGGTA----TGGGTCAGGCAGGGA-GTTTCC-GTTAAGA
gi|44170 : TCAAGGATTTTCC-GTTTGGAGAG-GGGTG----AAGGT----CAAGGA-TTTT---GTTAAGA
gi|44171 : CAGGGAGTTTCC-GTTAAGAGAGTGGGTG----TAGGT----CAAGGA-TTTTCC-GTTAGGA
gi|44172 : AAAGATTTTTC-GTTAGGAAACTTGGTG----TAGGT----CAAGGA-TTTTCC-GTAAGAA
gi|44173 : GGATTTTCC-GT-AAGAAAGTGGGTA----TGGGT----CAAGGA-TTTT---GTTAGGA
gi|44174 : TTTTCCAGTTAGGAAAGTGGGTA----TGAGT----CAAGGA-TTTTCC-GTAAGAA
gi|44175 : TTTCC-GTTAAGAAAGTGGGTG----T-GGT----CAAGGA-TTTCCC-GCTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|44168 ): TCAATGACTTTCCATTGGGAAAGATGGTGTGGGTCAAAGTTATTCCATTAGAA