lowQualScore : 1 0 0 0 0000 0 11111 0 00 3 0 2 7 0000 0
lowQualScore : . . . . .... . ..... . .. . . . . .... .
lowQualScore : 4 5 4 4 9999 4 11111 4 66 2 4 7 0 9999 4
consensus : TAAGAAA-GTTTTG-TCTTGG-TTT-ATC----A-TT-----CA-TGTCA--TATCTANATTTGA-TACAATACC----CAT-ACTT
Reference ( gi|83190 ) : TAAGAAA-GTTTTG-TCTTGG-TTT-ATC----A-TT-----CA-TGTCA--TATCTAGATTTGA-TACGATACC----CAT-ACTT
gi|83192 : TAAGAAA-GTTTTG-TCTTGG-TTT-ATC----A-TT-----CA-CGTCA--TATTTAAATTTGA-TACAATAAC----CAA-ACTT
gi|83197 : TAAGACA-GTTTTG-TCTTTG-TTT-ATC----A-TT-----CA-TGTCA--CATCTAGATTTTA-TACGGTAGC----CAT-ACTT
gi|83193 : TAAGAAT-GTTTTA-TCTTAG-TTT-ATA----A-TT-----CA-TGTCA--TATCTAGATTT-A-TACAATACC----CAT-ACTT
gi|83195 : TAAGAAA-GTTTTG-TCTTGG-TTA-ATC----A-CT-----AT-TGCAA--TATCTAGATTTGA-TACAATACC----CAT-ACTT
gi|83194 : TAAGAAA-GTTTTG-TCTTGG-TTA-ATC----A-CT-----AT-TGCAA--TATCTAGATTTGA-TACAATACC----CAT-ACTT
gi|83205 : TAAGAAA-GTTGTG-TCATGA-TTT-ATC----A-TT-----CA-TGTCA--CATCTAGATTTAA-CATGATACA----CAT-ACTT
gi|83191 : TAATAGA-GTTTTG-TCTTGG-TTT-ATT----A-TT-----CA-TGTTA--TTTCTAGATTTGA-TATAATAGC----CAT-ACTT
gi|83196 : TAAAAAA-GTTTTA-TTTTGA-TTT-ATC----A-TT-----CT-TGTCA--TATCTTGATTTGA-TACATTACC----CAT-ACTT
gi|83198 : TAAGACA-GTTTTG-TGTTGG-TTT-ATC----A-TT-----CT-TGTCA--TATCTTGGTTTGA-TACAATATC----CGT-ACTT
gi|83199 : TAAAAAA-GTTTTG-TCTTGG-TTT-ACT----A-TT-----CG-TGTCA--TATCTCGGTTTAA-TACAATGTC----CAT-ACTT
gi|83200 : TAAGAAA-GTTT-G-TCTTGG-TTC-ATC----A-TT-----CA-CGTCA--TATCTAGATTTGA-TATACTACT----CAT-
gi|83204 : TAATAAA-GTGTTG-TCTTGG-TT--ACC----A-TT-----CA-TGTCA--CATCTAGATTTGA-T-CCATACC----CAT-ACTT
gi|83201 : TAAGAAA-GTTTTG-TCTTAG-TTC-ATC----A-TT-----CG-TTTCA--TATCTTGATTTGA-TACAGTAGT----CAT-ACTT
gi|83202 : TAAGAAA-GTTTCG-TCTTGG-TTA-ATC----A-TT-----CA-TGTC----ATTTAGATTTTA-TACAATACC----TGT-ACTT
gi|83203 : TAAGAAA-GATATG-TCTTGG-TTT-ACC----A-TT-----CA-TGTCA--TATGCAGATTCGA-TA-AATACC----CAT-ACTT
gi|83206 : TAAGAAT-GTTTTA-TCTTGG-TTT-ATC----A-TT-----CA-TGTTA--TAACTAGATTTGA-TATAATAAC----C
gi|83207 : TAAGAAC-ATTTTG-TCTTGG-TTT-ACC----A-GT-----CA-TGTGA--TATCTAGATTTGA-TCAAATACC----CATAACTT
gi|83208 : TAAGAAA-GTTTTG-TCTTGG-TTT-ATC----A-GT-----CA-TGTCA--T-TATAGATTTGA-AACAATATTCTGACAT-ACTT
gi|83209 : TAAGGAA-GTTTTG-TCTTGG-TTT-ATC----T-TT-----CA-TATCA--TATCTTTTTTTGA-TACAATACT----TAT-ATTT
gi|83214 : TAAGAAA-GTGTTG-TACTGG-TTT-ATC----A-TT-----CA-TGCCA--TATCTAGATTGGA-TAC-ATAC
gi|83210 : TATGGAA-GTTTTA-TCTTGG-TCT-ATC----A-CT-----CA-GGTTA--TAACTAGATTGGA-TCCAATACC----CAT-ACTT
gi|83211 : TAAGACA-ATTTTGATTTTGG-ATT-ATC----A-TT-----CA-TGTTG--TATCCAGATTTGA-TACACTACC----CAT-AATT
gi|83212 : TAAGAAA-GTTTTG-TCTTGG-TTT-ATA----T-TT-----CA-CGTCA--TGTCTATATCCGA-GGCAATACC----TAT-GCTT
gi|83213 : TACGAAA-GTTTTG-TCCTAG-CTT-GTC----A-TT-----CA-T-------ATCTAGATTTGA-TACAATACC----TGT-ACTT
gi|83215 : TAAGAAA-GTTGTG-TATTGG-TTT-ATT----A-TC-----CT-TATCA--TATATA-ATTTGA-TACAATACC----CTT-ACTT
gi|83221 : TAAGAAA-GTTTTT-TCTTGG-TGT-ATC----A-TT-----GA-TGTCA--T-TCC-------A-TACGATACC----CAT-ACTT
gi|83216 : TAAGAA--GTTTTG-TCTTGG-TTT-ATC----A-TT-----CT-TGCCA--TATCTAAATTTGA-
gi|83217 : TAAGACA-GCTTTT-TTTTGG-TTA-ATC----A-TT-----CG-TGTTA--TATCTATATTTGA-TACAACACA----CGT-A
gi|83218 : TAAGGAC-GTTTTC-TCTTAG-TT--ATC----A-TT-----CA-TGTCA--TATTTTTATTTAA-GACAATACC----CA--ACTT
gi|83220 : TAACAAA-GTTTCA-CTTTGG-TTTCATC----A-AT-----TA-TGTCA--TATCTAGATTTGA-TACA---------CAT-ACTT
gi|83222 : TAAGAAA-GTTTAG-CCTTG--TTT-ATC----A-TT-----AA-TGTTA--TATCTGTAGTTGATTAC-ATATC----CAT-ACTT
gi|83224 : TAAAGAG-TTTTTG-TCACGG-CTT-ATC----A-TT-----CA-TGTCA--TATCTAGACTTCA-TAAAACACT----CCT-ATTT
gi|83223 : TAAGAAA-GTTTGG-TTTTGA-TTC-ATC----A-T-------------------CTAGATTTGA-TACACTACC----CAT-ACTT
gi|83225 : TAAGATA-ATTTTG-TCGTGG-TTT-ATT----A-TT-----CA-TGATT--TTTCTATATTTGA-TACACAATC----CAT-ACT
gi|83226 : TAAGAAA-GTTGTG-TATTGGTTTT-TTT----A-TC-----CT-TATCA--TACATA-ATTTGA-TACAATACC----AAT-ACTT
gi|83219 : TATGAAG-GTTTTG-TCGTGT-TTT-ATC----A-TT-----CA-TGTTA--TATATAGATAAGT-TAAAATACC----C
gi|83227 : AAGAAA-GTTTTG-TCTGGG-TTT-ATT----A-TT-----CA-TGTCA--TATCTAGATTTGA-TACAATACC----CAT-ACTT
gi|83228 : AAAAAA-GTTTTG-TCTTGG-TTT-GTC----A-TT-----CAATGTCA--TATCTAAATTTGA-AACAATATC----CAT-ACT
gi|83229 : AAGAAA-GTTTTG-TCTT-G-TTT-ATC----ATTT-----CA-TGTCT--TGTCTAGATTTCA-TACAATACC----CAT-AC
gi|83231 : AAGAAAAGTTTTG-TTTTGG-TTT-AAC----A-TT-----TA-CGTCA--TATTTAGATTTGA-CACAATACC----CAT-A
gi|83230 : AAGAAAAGTTTTG-TTTTGG-TTT-AAC----A-TT-----TA-CGTCA--TATTTAGATTTGA-CACAATACC----CAT-A
gi|83232 : AAGAAA-GTTTTG-TCTTAG-TTT-AGC----A-TT-----CA-TGCCA--TAACTACATTTGA-T---ATACC----AAT-ATTT
gi|83233 : AAAAA-GTTTTG-TCTTGG-TTC-ATC----A-TT-----GA-TGTCA--TATCTAGATTTGA-AACAATACA----TAT-ACCT
gi|83234 : AGGAA-GTTTTG-TTTTAG-TTT-ATT----A-TT-----CA-TGTCA--TATTTAAATATAA-TACAATATC----CAT-ACTT
gi|83235 : AGGAA-GTTTTG-TCTTTG-ATT-ATC----A-TG-----CA-TGTCA------TAG--TTGA-TACAATACC----CAT-ACTT
gi|83236 : GAAA-GTTTTG-TCTTGG-TTT-ATC----A-TT-----CA-TGTCG--TAT-TAGATTTGA-TACAATACC----CAT-ACTT
gi|83237 : GAAA-GCGTTG-TCTTGG-TTT-ATC----A-TT-----CA-TGTCA--TATTTAGATTTGT-TACAATACC----CAT-ACTT
gi|83238 : GAAA-GCGTTG-TCTTGG-TTT-ATC----A-TT-----CA-TGTAA--TATTTAGATTTGT-TACAGTACC----CAT-ACTT
gi|83239 : GAAA-GTTTCA-TCTTGG-TTT-TTC----A-TT-----TA-TGACA--TATCTAGATCTGA-GACAATACC----CAT-ACTT
gi|83240 : GAAA-GTTTTG-TCTTGG-TCT-ATC----A-AC-----CA-TGTCT--TACCTAGACTTGA-TGCAAT
gi|83242 : AAA-GTTTTG-TTTTAG-TTT-ATC----A-TT-----CA-TGTCA--TATTTAGATTTGA-CAAAATACC----TAT-ATTT
gi|83241 : AAA-GTTTTG-TTTTAG-TTT-ATC----A-TT-----CA-TGTCA--TATTTAGATTTGA-CAAAATACC----TAT-ATTT
gi|83243 : AAA-GTTTTG-TCTTGG-TTA-ACC----A-TTTATACCA-TACCA--TATCTGGATTAGA-TACAATAAC----AAT-ACTT
gi|83245 : AA-GTTTTG-CCTTGG-TGA-ATC----A-TG-----CA-TGTCG--TATCTAGATTTGA-TATAATGCC----CAC-ATTT
gi|83244 : AA-GCTTTT-AATCGG-TTT-ATC----A-TT-----CA-TGCCA--TATCTATATTTGA-TGAAATATC----CAT-ACTT
gi|83246 : A-GTTTAA-TCTTGT-TTC-ATC----A-TT-----CA-TATCG--TATCTGGATTTGA-TACAATACC----CAA-ACTT
gi|83247 : -GTTCAG-TCTTGG-TGT-GTT----A-TT-----CG-TGTCA--GATATAGATTTGA-GACAATAGT----CAT-ACTT
gi|83248 : TTTTT-TCT-GG-TTT-ATC----A-TT-----CA-TGTCA--TATCTATATTTGA-TCCTATACG----CAC-ACTT
gi|83249 : TTTTT-TTCTGG-TTT-ATC----A-TT-----CA-TGTCA--TATCTATATTTGA-TCCTATACA----CAC-ACT
gi|83250 : TTTG-CCTTGA-TTT-ATC----A------------ATCA--TATCTAGATTTT--TACAAAACC----CAT-ACTT
gi|83251 : TTG-TCATGG-TTT-ATC----A-TT-----CA-TGTCA--TATCTATATTTGA-TCCAATACC----CAT-ACT
gi|83252 : TTG-TCCTGG-TGT-ATC----A-TT-----CA-TGTCA--TATCTATATTTGA-T-CAATACC----CAT-ACTT
gi|83253 : TTG-TCCTGG-TTT-ATC----A-TT-----CA-AGTCA--TATCTATATTCGA-T-CAATACC----CAT-ACTT
gi|83254 : TTG-TCATGG-ATT-ATC----A-TT-----CA-TATCA--TATCTATATTTGA-TCCAATACC----CAT-ACTT
gi|83255 : TTG-TCCTGG-ATT-ATT----A-TT-----CA-TATCA--TATCTATATTTGA-TCCAATACC----CAT-ACTT
gi|83265 : TTG-TCCTGG-TTT-ATC----A-TT-----CA-AGTCA--TATCTATATTTGA-TCCTATACA----CAT-ACTT
gi|83256 : TTG-TCCTGG-TTT-ATC----A-TT-----AA-TGCCA--TCTCTATATTTGA-TCCAATACC----CAT-ACTT
gi|83260 : TTG-TCCTGG-TTA-ATC----A-TG-----CA-TGTCA--TATCTATATTTGG-TCCAATACC----CAT-ACTT
gi|83259 : TTG-TCCTGG-TTT-ATT----A-TG-----CA-TTTCA--TATCTATATTTGA-TCCAATACC----CAT-ACTT
gi|83258 : TTG-TCCTGG-TTA-ATC----A-TG-----CA-TGTCA--TATCTATATTTGG-TCCAATACC----CAT-ACTT
gi|83257 : TTG-TCCTGG-TTA-ATC----A-TG-----CA-TGTCA--TATCTATATTTGG-TCCAATACC----CAT-ACTT
gi|83261 : TTG-TCCTGG-TGT-ATC----A-TT-----TA-TGTCA--TATCTATATTTGA-TCCAATACT----CAT-AC
gi|83262 : TTG-TCATGG-TTT-ATC----A-TT-----CA-TGCCA--TATCTATATTTGA-TCCAATATC----AAT-ACTT
gi|83269 : TTG-TCCTGG-TTT-ATC----A-TT-----CA-AGTCA--TATCCATATTTGA-TCCTATACA----CAT-ACTT
gi|83268 : TTG-TCCTGG-TTT-ATC----A-TT-----CA-AGTCA--TATCTATATTTGA-TCCTATACA----CAT-ACCT
gi|83264 : TTG-TCATGG-GTT-ATC----A-TT-----CA-TGCCA--TATCTATATTTGA-TCCAATACC----AAT-ACTT
gi|83263 : TTG-TCCTGG-TGT-ATC----A-TC-----CA-TGTCA--TATCTATATTTGA-T-CAATACC----CAT-AGTT
gi|83266 : TTG-TCCTGG-TTT-ATC----A-TT-----CA-TGTAA--TATCGATATTTGA-TCCAATACT----CAT-ATTT
gi|83267 : TTG-TCATGG-TGT-ATC----A-TG-----CA-TGTCA--TATCTATATTTGA-TCCAATATT----CAT-ACTT
gi|83271 : TTG-TCCTGG-TTT-ATC----A-TT-----CA-AGTAA--TATCTATATTTGA-TTCAATATT----CAT-ATTT
gi|83270 : TTG-TCCTGG-NNN-NNNNNNNA-TT-----CA-TGTCA--TATCTATATTTGA-TCCAATACC----CAT-ACTT
gi|83272 : TTG-TCATGG-TAT-ATC----A-TG-----CA-TGTCA--TATCTATATTTAA-TCCAATATT----CAT-ACTT
gi|83273 : TTG-TCATGG-TC--ATC----A-TT-----CA-TGTCA--TATCTATATTTTA-TCCAATATT----CAT-ACTT
gi|83274 : TG-TCCTGG-TTT-ATC----A-TT-----TA-TGTCA--TATCTATATTAGA-TCCAATACC----CAT-ACTT
gi|83275 : TG-TCATGG-TT--ATC----A-TT-----CA-TGTCA--TATCTATATTTGA-TCCAGTACC----CAT-ACTT
gi|83276 : G-TCATGG-TTT-ATC----A-TT-----CA-TGTCA--TATCTATATTTGA-TCCAATACC----CAT-ACT
gi|83277 : CTTGG-TTT-ATC----A-TC-----AG-TGACA--TATCTAGATTTCA-GACAATACC----CAT-ACTT
gi|83279 : TGG-TTA-ATC----A-TC-----CA-TGCCA--TATCTATATTTGA-TCCAATACC----CAT-ACTT
gi|83278 : TGG-TTT-ATC----A-TT-----CA-TGCCA--TATCTATATTTGA-TCCAATATC----AAT-ACTT
gi|83280 : TGG-TTA-ATC----A-TT-----CA-TGCCA--TATCTATATTTGA-TCCAATACC----AAT-ACT
gi|83282 : TGG-TAA-ATC----A-TT-----CA-TG-CA--TATCTATATTTGA-TCCAATACC----CAT-ACTT
gi|83281 : TGG-TTA-ATT----A-TT-----CA-TGCCA--TATCAATATTTGA-TCCAATACC----CAT-ACTT
gi|83283 : GG-TTT-ATC----A-TT-----CA-TGTCA--TATCTATATTTGA-TCCAGTGCA----CAT-ACTT
gi|83284 : GG-TTT-ATC----A-TT-----CA-TATCACTTATCTAGATTTGA-AACTATACC----TAT-ACCT
Alignments
lowQualScore : 1 0 0 1111 0 11111 0 00 2 0 2 0000 0
lowQualScore : . . . .... . ..... . .. . . . .... .
lowQualScore : 4 5 4 3333 4 11111 4 66 1 4 5 9999 4
consensus : TAAGAAA-GTTTTG-TCTTGGTTT-ATC----A-TT-----CA-TGTCA--TATCTANATTTGA-TACAATACC----CAT-ACTT
Reference ( family-318 ) : TAAGAAA-GTTTTG-TCTTGGTTT-ATC----A-TT-----CA-TGTCA--TATCTANATTTGA-TACAATACC----CAT-ACTT
gi|83190 : TAAGAAA-GTTTTG-TCTTGGTTT-ATC----A-TT-----CA-TGTCA--TATCTAGATTTGA-TACGATACC----CAT-ACTT
gi|83191 : TAATAGA-GTTTTG-TCTTGGTTT-ATT----A-TT-----CA-TGTTA--TTTCTAGATTTGA-TATAATAGC----CAT-ACTT
gi|83192 : TAAGAAA-GTTTTG-TCTTGGTTT-ATC----A-TT-----CA-CGTCA--TATTTAAATTTGA-TACAATAAC----CAA-ACTT
gi|83193 : TAAGAAT-GTTTTA-TCTTAGTTT-ATA----A-TT-----CA-TGTCA--TATCTAGATTT-A-TACAATACC----CAT-ACTT
gi|83194 : TAAGAAA-GTTTTG-TCTTGGTTA-ATC----A-CT-----AT-TGCAA--TATCTAGATTTGA-TACAATACC----CAT-ACTT
gi|83195 : TAAGAAA-GTTTTG-TCTTGGTTA-ATC----A-CT-----AT-TGCAA--TATCTAGATTTGA-TACAATACC----CAT-ACTT
gi|83196 : TAAAAAA-GTTTTA-TTTTGATTT-ATC----A-TT-----CT-TGTCA--TATCTTGATTTGA-TACATTACC----CAT-ACTT
gi|83197 : TAAGACA-GTTTTG-TCTTTGTTT-ATC----A-TT-----CA-TGTCA--CATCTAGATTTTA-TACGGTAGC----CAT-ACTT
gi|83198 : TAAGACA-GTTTTG-TGTTGGTTT-ATC----A-TT-----CT-TGTCA--TATCTTGGTTTGA-TACAATATC----CGT-ACTT
gi|83199 : TAAAAAA-GTTTTG-TCTTGGTTT-ACT----A-TT-----CG-TGTCA--TATCTCGGTTTAA-TACAATGTC----CAT-ACTT
gi|83200 : TAAGAAA-GTTT-G-TCTTGGTTC-ATC----A-TT-----CA-CGTCA--TATCTAGATTTGA-TATACTACT----CAT-
gi|83201 : TAAGAAA-GTTTTG-TCTTAGTTC-ATC----A-TT-----CG-TTTCA--TATCTTGATTTGA-TACAGTAGT----CAT-ACTT
gi|83202 : TAAGAAA-GTTTCG-TCTTGGTTA-ATC----A-TT-----CA-TGTC----ATTTAGATTTTA-TACAATACC----TGT-ACTT
gi|83203 : TAAGAAA-GATATG-TCTTGGTTT-ACC----A-TT-----CA-TGTCA--TATGCAGATTCGA-TA-AATACC----CAT-ACTT
gi|83204 : TAATAAA-GTGTTG-TCTTGGTT--ACC----A-TT-----CA-TGTCA--CATCTAGATTTGA-T-CCATACC----CAT-ACTT
gi|83205 : TAAGAAA-GTTGTG-TCATGATTT-ATC----A-TT-----CA-TGTCA--CATCTAGATTTAA-CATGATACA----CAT-ACTT
gi|83206 : TAAGAAT-GTTTTA-TCTTGGTTT-ATC----A-TT-----CA-TGTTA--TAACTAGATTTGA-TATAATAAC----C
gi|83207 : TAAGAAC-ATTTTG-TCTTGGTTT-ACC----A-GT-----CA-TGTGA--TATCTAGATTTGA-TCAAATACC----CATAACTT
gi|83208 : TAAGAAA-GTTTTG-TCTTGGTTT-ATC----A-GT-----CA-TGTCA--T-TATAGATTTGA-AACAATATTCTGACAT-ACTT
gi|83209 : TAAGGAA-GTTTTG-TCTTGGTTT-ATC----T-TT-----CA-TATCA--TATCTTTTTTTGA-TACAATACT----TAT-ATTT
gi|83210 : TATGGAA-GTTTTA-TCTTGGTCT-ATC----A-CT-----CA-GGTTA--TAACTAGATTGGA-TCCAATACC----CAT-ACTT
gi|83211 : TAAGACA-ATTTTGATTTTGGATT-ATC----A-TT-----CA-TGTTG--TATCCAGATTTGA-TACACTACC----CAT-AATT
gi|83212 : TAAGAAA-GTTTTG-TCTTGGTTT-ATA----T-TT-----CA-CGTCA--TGTCTATATCCGA-GGCAATACC----TAT-GCTT
gi|83213 : TACGAAA-GTTTTG-TCCTAGCTT-GTC----A-TT-----CA-T-------ATCTAGATTTGA-TACAATACC----TGT-ACTT
gi|83214 : TAAGAAA-GTGTTG-TACTGGTTT-ATC----A-TT-----CA-TGCCA--TATCTAGATTGGA-TAC-ATAC
gi|83215 : TAAGAAA-GTTGTG-TATTGGTTT-ATT----A-TC-----CT-TATCA--TATATA-ATTTGA-TACAATACC----CTT-ACTT
gi|83216 : TAAGAA--GTTTTG-TCTTGGTTT-ATC----A-TT-----CT-TGCCA--TATCTAAATTTGA-
gi|83217 : TAAGACA-GCTTTT-TTTTGGTTA-ATC----A-TT-----CG-TGTTA--TATCTATATTTGA-TACAACACA----CGT-A
gi|83218 : TAAGGAC-GTTTTC-TCTTAGTT--ATC----A-TT-----CA-TGTCA--TATTTTTATTTAA-GACAATACC----CA--ACTT
gi|83219 : TATGAAG-GTTTTG-TCGTGTTTT-ATC----A-TT-----CA-TGTTA--TATATAGATAAGT-TAAAATACC----C
gi|83220 : TAACAAA-GTTTCA-CTTTGGTTTCATC----A-AT-----TA-TGTCA--TATCTAGATTTGA-TACA---------CAT-ACTT
gi|83221 : TAAGAAA-GTTTTT-TCTTGGTGT-ATC----A-TT-----GA-TGTCA--T-TCC-------A-TACGATACC----CAT-ACTT
gi|83222 : TAAGAAA-GTTTAG-CCTTG-TTT-ATC----A-TT-----AA-TGTTA--TATCTGTAGTTGATTAC-ATATC----CAT-ACTT
gi|83223 : TAAGAAA-GTTTGG-TTTTGATTC-ATC----A-T-------------------CTAGATTTGA-TACACTACC----CAT-ACTT
gi|83224 : TAAAGAG-TTTTTG-TCACGGCTT-ATC----A-TT-----CA-TGTCA--TATCTAGACTTCA-TAAAACACT----CCT-ATTT
gi|83225 : TAAGATA-ATTTTG-TCGTGGTTT-ATT----A-TT-----CA-TGATT--TTTCTATATTTGA-TACACAATC----CAT-ACT
gi|83226 : TAAGAAA-GTTGTG-TATTGGTTT-TTTT---A-TC-----CT-TATCA--TACATA-ATTTGA-TACAATACC----AAT-ACTT
gi|83227 : AAGAAA-GTTTTG-TCTGGGTTT-ATT----A-TT-----CA-TGTCA--TATCTAGATTTGA-TACAATACC----CAT-ACTT
gi|83228 : AAAAAA-GTTTTG-TCTTGGTTT-GTC----A-TT-----CAATGTCA--TATCTAAATTTGA-AACAATATC----CAT-ACT
gi|83229 : AAGAAA-GTTTTG-TCTT-GTTT-ATC----ATTT-----CA-TGTCT--TGTCTAGATTTCA-TACAATACC----CAT-AC
gi|83230 : AAGAAAAGTTTTG-TTTTGGTTT-AAC----A-TT-----TA-CGTCA--TATTTAGATTTGA-CACAATACC----CAT-A
gi|83231 : AAGAAAAGTTTTG-TTTTGGTTT-AAC----A-TT-----TA-CGTCA--TATTTAGATTTGA-CACAATACC----CAT-A
gi|83232 : AAGAAA-GTTTTG-TCTTAGTTT-AGC----A-TT-----CA-TGCCA--TAACTACATTTGA-T---ATACC----AAT-ATTT
gi|83233 : AAAAA-GTTTTG-TCTTGGTTC-ATC----A-TT-----GA-TGTCA--TATCTAGATTTGA-AACAATACA----TAT-ACCT
gi|83234 : AGGAA-GTTTTG-TTTTAGTTT-ATT----A-TT-----CA-TGTCA--TATTTAAATATAA-TACAATATC----CAT-ACTT
gi|83235 : AGGAA-GTTTTG-TCTTTGATT-ATC----A-TG-----CA-TGTCA--T------AGTTGA-TACAATACC----CAT-ACTT
gi|83236 : GAAA-GTTTTG-TCTTGGTTT-ATC----A-TT-----CA-TGTCG--TAT-TAGATTTGA-TACAATACC----CAT-ACTT
gi|83237 : GAAA-GCGTTG-TCTTGGTTT-ATC----A-TT-----CA-TGTCA--TATTTAGATTTGT-TACAATACC----CAT-ACTT
gi|83238 : GAAA-GCGTTG-TCTTGGTTT-ATC----A-TT-----CA-TGTAA--TATTTAGATTTGT-TACAGTACC----CAT-ACTT
gi|83239 : GAAA-GTTTCA-TCTTGGTTT-TTC----A-TT-----TA-TGACA--TATCTAGATCTGA-GACAATACC----CAT-ACTT
gi|83240 : GAAA-GTTTTG-TCTTGGTCT-ATC----A-AC-----CA-TGTCT--TACCTAGACTTGA-TGCAAT
gi|83241 : AAA-GTTTTG-TTTTAGTTT-ATC----A-TT-----CA-TGTCA--TATTTAGATTTGA-CAAAATACC----TAT-ATTT
gi|83242 : AAA-GTTTTG-TTTTAGTTT-ATC----A-TT-----CA-TGTCA--TATTTAGATTTGA-CAAAATACC----TAT-ATTT
gi|83243 : AAA-GTTTTG-TCTTGGTTA-ACC----A-TTTATACCA-TACCA--TATCTGGATTAGA-TACAATAAC----AAT-ACTT
gi|83244 : AA-GCTTTT-AATCGGTTT-ATC----A-TT-----CA-TGCCA--TATCTATATTTGA-TGAAATATC----CAT-ACTT
gi|83245 : AA-GTTTTG-CCTTGGTGA-ATC----A-TG-----CA-TGTCG--TATCTAGATTTGA-TATAATGCC----CAC-ATTT
gi|83246 : A-GTTTAA-TCTTGTTTC-ATC----A-TT-----CA-TATCG--TATCTGGATTTGA-TACAATACC----CAA-ACTT
gi|83247 : -GTTCAG-TCTTGGTGT-GTT----A-TT-----CG-TGTCA--GATATAGATTTGA-GACAATAGT----CAT-ACTT
gi|83248 : TTTTT-TCT-GGTTT-ATC----A-TT-----CA-TGTCA--TATCTATATTTGA-TCCTATACG----CAC-ACTT
gi|83249 : TTTTT-TTCTGGTTT-ATC----A-TT-----CA-TGTCA--TATCTATATTTGA-TCCTATACA----CAC-ACT
gi|83250 : TTTG-CCTTGATTT-ATC----A------------ATCA--TATCTAGATTTT--TACAAAACC----CAT-ACTT
gi|83251 : TTG-TCATGGTTT-ATC----A-TT-----CA-TGTCA--TATCTATATTTGA-TCCAATACC----CAT-ACT
gi|83252 : TTG-TCCTGGTGT-ATC----A-TT-----CA-TGTCA--TATCTATATTTGA-T-CAATACC----CAT-ACTT
gi|83253 : TTG-TCCTGGTTT-ATC----A-TT-----CA-AGTCA--TATCTATATTCGA-T-CAATACC----CAT-ACTT
gi|83254 : TTG-TCATGGATT-ATC----A-TT-----CA-TATCA--TATCTATATTTGA-TCCAATACC----CAT-ACTT
gi|83255 : TTG-TCCTGGATT-ATT----A-TT-----CA-TATCA--TATCTATATTTGA-TCCAATACC----CAT-ACTT
gi|83256 : TTG-TCCTGGTTT-ATC----A-TT-----AA-TGCCA--TCTCTATATTTGA-TCCAATACC----CAT-ACTT
gi|83257 : TTG-TCCTGGTTA-ATC----A-TG-----CA-TGTCA--TATCTATATTTGG-TCCAATACC----CAT-ACTT
gi|83258 : TTG-TCCTGGTTA-ATC----A-TG-----CA-TGTCA--TATCTATATTTGG-TCCAATACC----CAT-ACTT
gi|83259 : TTG-TCCTGGTTT-ATT----A-TG-----CA-TTTCA--TATCTATATTTGA-TCCAATACC----CAT-ACTT
gi|83260 : TTG-TCCTGGTTA-ATC----A-TG-----CA-TGTCA--TATCTATATTTGG-TCCAATACC----CAT-ACTT
gi|83261 : TTG-TCCTGGTGT-ATC----A-TT-----TA-TGTCA--TATCTATATTTGA-TCCAATACT----CAT-AC
gi|83262 : TTG-TCATGGTTT-ATC----A-TT-----CA-TGCCA--TATCTATATTTGA-TCCAATATC----AAT-ACTT
gi|83263 : TTG-TCCTGGTGT-ATC----A-TC-----CA-TGTCA--TATCTATATTTGA-T-CAATACC----CAT-AGTT
gi|83264 : TTG-TCATGGGTT-ATC----A-TT-----CA-TGCCA--TATCTATATTTGA-TCCAATACC----AAT-ACTT
gi|83265 : TTG-TCCTGGTTT-ATC----A-TT-----CA-AGTCA--TATCTATATTTGA-TCCTATACA----CAT-ACTT
gi|83266 : TTG-TCCTGGTTT-ATC----A-TT-----CA-TGTAA--TATCGATATTTGA-TCCAATACT----CAT-ATTT
gi|83267 : TTG-TCATGGTGT-ATC----A-TG-----CA-TGTCA--TATCTATATTTGA-TCCAATATT----CAT-ACTT
gi|83268 : TTG-TCCTGGTTT-ATC----A-TT-----CA-AGTCA--TATCTATATTTGA-TCCTATACA----CAT-ACCT
gi|83269 : TTG-TCCTGGTTT-ATC----A-TT-----CA-AGTCA--TATCCATATTTGA-TCCTATACA----CAT-ACTT
gi|83270 : TTG-TCCTGGNNN-NNNNNNNA-TT-----CA-TGTCA--TATCTATATTTGA-TCCAATACC----CAT-ACTT
gi|83271 : TTG-TCCTGGTTT-ATC----A-TT-----CA-AGTAA--TATCTATATTTGA-TTCAATATT----CAT-ATTT
gi|83272 : TTG-TCATGGTAT-ATC----A-TG-----CA-TGTCA--TATCTATATTTAA-TCCAATATT----CAT-ACTT
gi|83273 : TTG-TCATGGTC--ATC----A-TT-----CA-TGTCA--TATCTATATTTTA-TCCAATATT----CAT-ACTT
gi|83274 : TG-TCCTGGTTT-ATC----A-TT-----TA-TGTCA--TATCTATATTAGA-TCCAATACC----CAT-ACTT
gi|83275 : TG-TCATGGTT--ATC----A-TT-----CA-TGTCA--TATCTATATTTGA-TCCAGTACC----CAT-ACTT
gi|83276 : G-TCATGGTTT-ATC----A-TT-----CA-TGTCA--TATCTATATTTGA-TCCAATACC----CAT-ACT
gi|83277 : CTTGGTTT-ATC----A-TC-----AG-TGACA--TATCTAGATTTCA-GACAATACC----CAT-ACTT
gi|83278 : TGGTTT-ATC----A-TT-----CA-TGCCA--TATCTATATTTGA-TCCAATATC----AAT-ACTT
gi|83279 : TGGTTA-ATC----A-TC-----CA-TGCCA--TATCTATATTTGA-TCCAATACC----CAT-ACTT
gi|83280 : TGGTTA-ATC----A-TT-----CA-TGCCA--TATCTATATTTGA-TCCAATACC----AAT-ACT
gi|83281 : TGGTTA-ATT----A-TT-----CA-TGCCA--TATCAATATTTGA-TCCAATACC----CAT-ACTT
gi|83282 : TGGTAA-ATC----A-TT-----CA-TG-CA--TATCTATATTTGA-TCCAATACC----CAT-ACTT
gi|83283 : GGTTT-ATC----A-TT-----CA-TGTCA--TATCTATATTTGA-TCCAGTGCA----CAT-ACTT
gi|83284 : GGTTT-ATC----A-TT-----CA-TATCACTTATCTAGATTTGA-AACTATACC----TAT-ACCT
Alignments
lowQualScore : 1 0 0 1111 0 11111 0 00 2 0 2 0000 0
lowQualScore : . . . .... . ..... . .. . . . .... .
lowQualScore : 4 5 4 3333 4 11111 4 66 1 4 5 9999 4
consensus : TAAGAAA-GTTTTG-TCTTGGTTT-ATC----A-TT-----CA-TGTCA--TATCTANATTTGA-TACAATACC----CAT-ACTT
Reference ( family-318 ) : TAAGAAA-GTTTTG-TCTTGGTTT-ATC----A-TT-----CA-TGTCA--TATCTANATTTGA-TACAATACC----CAT-ACTT
gi|83190 : TAAGAAA-GTTTTG-TCTTGGTTT-ATC----A-TT-----CA-TGTCA--TATCTAGATTTGA-TACGATACC----CAT-ACTT
gi|83191 : TAATAGA-GTTTTG-TCTTGGTTT-ATT----A-TT-----CA-TGTTA--TTTCTAGATTTGA-TATAATAGC----CAT-ACTT
gi|83192 : TAAGAAA-GTTTTG-TCTTGGTTT-ATC----A-TT-----CA-CGTCA--TATTTAAATTTGA-TACAATAAC----CAA-ACTT
gi|83193 : TAAGAAT-GTTTTA-TCTTAGTTT-ATA----A-TT-----CA-TGTCA--TATCTAGATTT-A-TACAATACC----CAT-ACTT
gi|83194 : TAAGAAA-GTTTTG-TCTTGGTTA-ATC----A-CT-----AT-TGCAA--TATCTAGATTTGA-TACAATACC----CAT-ACTT
gi|83195 : TAAGAAA-GTTTTG-TCTTGGTTA-ATC----A-CT-----AT-TGCAA--TATCTAGATTTGA-TACAATACC----CAT-ACTT
gi|83196 : TAAAAAA-GTTTTA-TTTTGATTT-ATC----A-TT-----CT-TGTCA--TATCTTGATTTGA-TACATTACC----CAT-ACTT
gi|83197 : TAAGACA-GTTTTG-TCTTTGTTT-ATC----A-TT-----CA-TGTCA--CATCTAGATTTTA-TACGGTAGC----CAT-ACTT
gi|83198 : TAAGACA-GTTTTG-TGTTGGTTT-ATC----A-TT-----CT-TGTCA--TATCTTGGTTTGA-TACAATATC----CGT-ACTT
gi|83199 : TAAAAAA-GTTTTG-TCTTGGTTT-ACT----A-TT-----CG-TGTCA--TATCTCGGTTTAA-TACAATGTC----CAT-ACTT
gi|83200 : TAAGAAA-GTTT-G-TCTTGGTTC-ATC----A-TT-----CA-CGTCA--TATCTAGATTTGA-TATACTACT----CAT-
gi|83201 : TAAGAAA-GTTTTG-TCTTAGTTC-ATC----A-TT-----CG-TTTCA--TATCTTGATTTGA-TACAGTAGT----CAT-ACTT
gi|83202 : TAAGAAA-GTTTCG-TCTTGGTTA-ATC----A-TT-----CA-TGTC----ATTTAGATTTTA-TACAATACC----TGT-ACTT
gi|83203 : TAAGAAA-GATATG-TCTTGGTTT-ACC----A-TT-----CA-TGTCA--TATGCAGATTCGA-TA-AATACC----CAT-ACTT
gi|83204 : TAATAAA-GTGTTG-TCTTGGTT--ACC----A-TT-----CA-TGTCA--CATCTAGATTTGA-T-CCATACC----CAT-ACTT
gi|83205 : TAAGAAA-GTTGTG-TCATGATTT-ATC----A-TT-----CA-TGTCA--CATCTAGATTTAA-CATGATACA----CAT-ACTT
gi|83206 : TAAGAAT-GTTTTA-TCTTGGTTT-ATC----A-TT-----CA-TGTTA--TAACTAGATTTGA-TATAATAAC----C
gi|83207 : TAAGAAC-ATTTTG-TCTTGGTTT-ACC----A-GT-----CA-TGTGA--TATCTAGATTTGA-TCAAATACC----CATAACTT
gi|83208 : TAAGAAA-GTTTTG-TCTTGGTTT-ATC----A-GT-----CA-TGTCA--T-TATAGATTTGA-AACAATATTCTGACAT-ACTT
gi|83209 : TAAGGAA-GTTTTG-TCTTGGTTT-ATC----T-TT-----CA-TATCA--TATCTTTTTTTGA-TACAATACT----TAT-ATTT
gi|83210 : TATGGAA-GTTTTA-TCTTGGTCT-ATC----A-CT-----CA-GGTTA--TAACTAGATTGGA-TCCAATACC----CAT-ACTT
gi|83211 : TAAGACA-ATTTTGATTTTGGATT-ATC----A-TT-----CA-TGTTG--TATCCAGATTTGA-TACACTACC----CAT-AATT
gi|83212 : TAAGAAA-GTTTTG-TCTTGGTTT-ATA----T-TT-----CA-CGTCA--TGTCTATATCCGA-GGCAATACC----TAT-GCTT
gi|83213 : TACGAAA-GTTTTG-TCCTAGCTT-GTC----A-TT-----CA-T-------ATCTAGATTTGA-TACAATACC----TGT-ACTT
gi|83214 : TAAGAAA-GTGTTG-TACTGGTTT-ATC----A-TT-----CA-TGCCA--TATCTAGATTGGA-TAC-ATAC
gi|83215 : TAAGAAA-GTTGTG-TATTGGTTT-ATT----A-TC-----CT-TATCA--TATATA-ATTTGA-TACAATACC----CTT-ACTT
gi|83216 : TAAGAA--GTTTTG-TCTTGGTTT-ATC----A-TT-----CT-TGCCA--TATCTAAATTTGA-
gi|83217 : TAAGACA-GCTTTT-TTTTGGTTA-ATC----A-TT-----CG-TGTTA--TATCTATATTTGA-TACAACACA----CGT-A
gi|83218 : TAAGGAC-GTTTTC-TCTTAGTT--ATC----A-TT-----CA-TGTCA--TATTTTTATTTAA-GACAATACC----CA--ACTT
gi|83219 : TATGAAG-GTTTTG-TCGTGTTTT-ATC----A-TT-----CA-TGTTA--TATATAGATAAGT-TAAAATACC----C
gi|83220 : TAACAAA-GTTTCA-CTTTGGTTTCATC----A-AT-----TA-TGTCA--TATCTAGATTTGA-TACA---------CAT-ACTT
gi|83221 : TAAGAAA-GTTTTT-TCTTGGTGT-ATC----A-TT-----GA-TGTCA--T-TCC-------A-TACGATACC----CAT-ACTT
gi|83222 : TAAGAAA-GTTTAG-CCTTG-TTT-ATC----A-TT-----AA-TGTTA--TATCTGTAGTTGATTAC-ATATC----CAT-ACTT
gi|83223 : TAAGAAA-GTTTGG-TTTTGATTC-ATC----A-T-------------------CTAGATTTGA-TACACTACC----CAT-ACTT
gi|83224 : TAAAGAG-TTTTTG-TCACGGCTT-ATC----A-TT-----CA-TGTCA--TATCTAGACTTCA-TAAAACACT----CCT-ATTT
gi|83225 : TAAGATA-ATTTTG-TCGTGGTTT-ATT----A-TT-----CA-TGATT--TTTCTATATTTGA-TACACAATC----CAT-ACT
gi|83226 : TAAGAAA-GTTGTG-TATTGGTTT-TTTT---A-TC-----CT-TATCA--TACATA-ATTTGA-TACAATACC----AAT-ACTT
gi|83227 : AAGAAA-GTTTTG-TCTGGGTTT-ATT----A-TT-----CA-TGTCA--TATCTAGATTTGA-TACAATACC----CAT-ACTT
gi|83228 : AAAAAA-GTTTTG-TCTTGGTTT-GTC----A-TT-----CAATGTCA--TATCTAAATTTGA-AACAATATC----CAT-ACT
gi|83229 : AAGAAA-GTTTTG-TCTT-GTTT-ATC----ATTT-----CA-TGTCT--TGTCTAGATTTCA-TACAATACC----CAT-AC
gi|83230 : AAGAAAAGTTTTG-TTTTGGTTT-AAC----A-TT-----TA-CGTCA--TATTTAGATTTGA-CACAATACC----CAT-A
gi|83231 : AAGAAAAGTTTTG-TTTTGGTTT-AAC----A-TT-----TA-CGTCA--TATTTAGATTTGA-CACAATACC----CAT-A
gi|83232 : AAGAAA-GTTTTG-TCTTAGTTT-AGC----A-TT-----CA-TGCCA--TAACTACATTTGA-T---ATACC----AAT-ATTT
gi|83233 : AAAAA-GTTTTG-TCTTGGTTC-ATC----A-TT-----GA-TGTCA--TATCTAGATTTGA-AACAATACA----TAT-ACCT
gi|83234 : AGGAA-GTTTTG-TTTTAGTTT-ATT----A-TT-----CA-TGTCA--TATTTAAATATAA-TACAATATC----CAT-ACTT
gi|83235 : AGGAA-GTTTTG-TCTTTGATT-ATC----A-TG-----CA-TGTCA--T------AGTTGA-TACAATACC----CAT-ACTT
gi|83236 : GAAA-GTTTTG-TCTTGGTTT-ATC----A-TT-----CA-TGTCG--TAT-TAGATTTGA-TACAATACC----CAT-ACTT
gi|83237 : GAAA-GCGTTG-TCTTGGTTT-ATC----A-TT-----CA-TGTCA--TATTTAGATTTGT-TACAATACC----CAT-ACTT
gi|83238 : GAAA-GCGTTG-TCTTGGTTT-ATC----A-TT-----CA-TGTAA--TATTTAGATTTGT-TACAGTACC----CAT-ACTT
gi|83239 : GAAA-GTTTCA-TCTTGGTTT-TTC----A-TT-----TA-TGACA--TATCTAGATCTGA-GACAATACC----CAT-ACTT
gi|83240 : GAAA-GTTTTG-TCTTGGTCT-ATC----A-AC-----CA-TGTCT--TACCTAGACTTGA-TGCAAT
gi|83241 : AAA-GTTTTG-TTTTAGTTT-ATC----A-TT-----CA-TGTCA--TATTTAGATTTGA-CAAAATACC----TAT-ATTT
gi|83242 : AAA-GTTTTG-TTTTAGTTT-ATC----A-TT-----CA-TGTCA--TATTTAGATTTGA-CAAAATACC----TAT-ATTT
gi|83243 : AAA-GTTTTG-TCTTGGTTA-ACC----A-TTTATACCA-TACCA--TATCTGGATTAGA-TACAATAAC----AAT-ACTT
gi|83244 : AA-GCTTTT-AATCGGTTT-ATC----A-TT-----CA-TGCCA--TATCTATATTTGA-TGAAATATC----CAT-ACTT
gi|83245 : AA-GTTTTG-CCTTGGTGA-ATC----A-TG-----CA-TGTCG--TATCTAGATTTGA-TATAATGCC----CAC-ATTT
gi|83246 : A-GTTTAA-TCTTGTTTC-ATC----A-TT-----CA-TATCG--TATCTGGATTTGA-TACAATACC----CAA-ACTT
gi|83247 : -GTTCAG-TCTTGGTGT-GTT----A-TT-----CG-TGTCA--GATATAGATTTGA-GACAATAGT----CAT-ACTT
gi|83248 : TTTTT-TCT-GGTTT-ATC----A-TT-----CA-TGTCA--TATCTATATTTGA-TCCTATACG----CAC-ACTT
gi|83249 : TTTTT-TTCTGGTTT-ATC----A-TT-----CA-TGTCA--TATCTATATTTGA-TCCTATACA----CAC-ACT
gi|83250 : TTTG-CCTTGATTT-ATC----A------------ATCA--TATCTAGATTTT--TACAAAACC----CAT-ACTT
gi|83251 : TTG-TCATGGTTT-ATC----A-TT-----CA-TGTCA--TATCTATATTTGA-TCCAATACC----CAT-ACT
gi|83252 : TTG-TCCTGGTGT-ATC----A-TT-----CA-TGTCA--TATCTATATTTGA-T-CAATACC----CAT-ACTT
gi|83253 : TTG-TCCTGGTTT-ATC----A-TT-----CA-AGTCA--TATCTATATTCGA-T-CAATACC----CAT-ACTT
gi|83254 : TTG-TCATGGATT-ATC----A-TT-----CA-TATCA--TATCTATATTTGA-TCCAATACC----CAT-ACTT
gi|83255 : TTG-TCCTGGATT-ATT----A-TT-----CA-TATCA--TATCTATATTTGA-TCCAATACC----CAT-ACTT
gi|83256 : TTG-TCCTGGTTT-ATC----A-TT-----AA-TGCCA--TCTCTATATTTGA-TCCAATACC----CAT-ACTT
gi|83257 : TTG-TCCTGGTTA-ATC----A-TG-----CA-TGTCA--TATCTATATTTGG-TCCAATACC----CAT-ACTT
gi|83258 : TTG-TCCTGGTTA-ATC----A-TG-----CA-TGTCA--TATCTATATTTGG-TCCAATACC----CAT-ACTT
gi|83259 : TTG-TCCTGGTTT-ATT----A-TG-----CA-TTTCA--TATCTATATTTGA-TCCAATACC----CAT-ACTT
gi|83260 : TTG-TCCTGGTTA-ATC----A-TG-----CA-TGTCA--TATCTATATTTGG-TCCAATACC----CAT-ACTT
gi|83261 : TTG-TCCTGGTGT-ATC----A-TT-----TA-TGTCA--TATCTATATTTGA-TCCAATACT----CAT-AC
gi|83262 : TTG-TCATGGTTT-ATC----A-TT-----CA-TGCCA--TATCTATATTTGA-TCCAATATC----AAT-ACTT
gi|83263 : TTG-TCCTGGTGT-ATC----A-TC-----CA-TGTCA--TATCTATATTTGA-T-CAATACC----CAT-AGTT
gi|83264 : TTG-TCATGGGTT-ATC----A-TT-----CA-TGCCA--TATCTATATTTGA-TCCAATACC----AAT-ACTT
gi|83265 : TTG-TCCTGGTTT-ATC----A-TT-----CA-AGTCA--TATCTATATTTGA-TCCTATACA----CAT-ACTT
gi|83266 : TTG-TCCTGGTTT-ATC----A-TT-----CA-TGTAA--TATCGATATTTGA-TCCAATACT----CAT-ATTT
gi|83267 : TTG-TCATGGTGT-ATC----A-TG-----CA-TGTCA--TATCTATATTTGA-TCCAATATT----CAT-ACTT
gi|83268 : TTG-TCCTGGTTT-ATC----A-TT-----CA-AGTCA--TATCTATATTTGA-TCCTATACA----CAT-ACCT
gi|83269 : TTG-TCCTGGTTT-ATC----A-TT-----CA-AGTCA--TATCCATATTTGA-TCCTATACA----CAT-ACTT
gi|83270 : TTG-TCCTGGNNN-NNNNNNNA-TT-----CA-TGTCA--TATCTATATTTGA-TCCAATACC----CAT-ACTT
gi|83271 : TTG-TCCTGGTTT-ATC----A-TT-----CA-AGTAA--TATCTATATTTGA-TTCAATATT----CAT-ATTT
gi|83272 : TTG-TCATGGTAT-ATC----A-TG-----CA-TGTCA--TATCTATATTTAA-TCCAATATT----CAT-ACTT
gi|83273 : TTG-TCATGGTC--ATC----A-TT-----CA-TGTCA--TATCTATATTTTA-TCCAATATT----CAT-ACTT
gi|83274 : TG-TCCTGGTTT-ATC----A-TT-----TA-TGTCA--TATCTATATTAGA-TCCAATACC----CAT-ACTT
gi|83275 : TG-TCATGGTT--ATC----A-TT-----CA-TGTCA--TATCTATATTTGA-TCCAGTACC----CAT-ACTT
gi|83276 : G-TCATGGTTT-ATC----A-TT-----CA-TGTCA--TATCTATATTTGA-TCCAATACC----CAT-ACT
gi|83277 : CTTGGTTT-ATC----A-TC-----AG-TGACA--TATCTAGATTTCA-GACAATACC----CAT-ACTT
gi|83278 : TGGTTT-ATC----A-TT-----CA-TGCCA--TATCTATATTTGA-TCCAATATC----AAT-ACTT
gi|83279 : TGGTTA-ATC----A-TC-----CA-TGCCA--TATCTATATTTGA-TCCAATACC----CAT-ACTT
gi|83280 : TGGTTA-ATC----A-TT-----CA-TGCCA--TATCTATATTTGA-TCCAATACC----AAT-ACT
gi|83281 : TGGTTA-ATT----A-TT-----CA-TGCCA--TATCAATATTTGA-TCCAATACC----CAT-ACTT
gi|83282 : TGGTAA-ATC----A-TT-----CA-TG-CA--TATCTATATTTGA-TCCAATACC----CAT-ACTT
gi|83283 : GGTTT-ATC----A-TT-----CA-TGTCA--TATCTATATTTGA-TCCAGTGCA----CAT-ACTT
gi|83284 : GGTTT-ATC----A-TT-----CA-TATCACTTATCTAGATTTGA-AACTATACC----TAT-ACCT
blockSeqs : A NNNN TATAC G A
blockSeqs : A T . A A
blockSeqs : . . . G A
blockSeqs : . . . G A
blockSeqs : . . . G A
blockSeqs : . . . G A
blockSeqs : . . . G A
blockSeqs : . . . G A
blockSeqs : . . . G A
blockSeqs : . . . G A
blockSeqs : . . . G A
blockSeqs : . . . G A
blockSeqs : . . . G A
blockSeqs : . . . G A
blockSeqs : . . . G A
blockSeqs : . . . G C
blockSeqs : . . . G A
blockSeqs : . . . G A
blockSeqs : . . . T C
blockSeqs : . . . G A
blockSeqs : . . . G G
blockSeqs : . . . T A
blockSeqs : . . . G A
blockSeqs : . . . G A
blockSeqs : . . . A A
blockSeqs : . . . T A
blockSeqs : . . . T A
blockSeqs : . . . G A
blockSeqs : . . . G A
blockSeqs : . . . T A
blockSeqs : . . . G A
blockSeqs : . . . G A
blockSeqs : . . . T A
blockSeqs : . . . G A
blockSeqs : . . . A A
blockSeqs : . . . G A
blockSeqs : . . . G A
blockSeqs : . . . G A
blockSeqs : . . . C A
blockSeqs : . . . G A
blockSeqs : . . . A A
blockSeqs : . . . G A
blockSeqs : . . . G A
blockSeqs : . . . G A
blockSeqs : . . . G A
blockSeqs : . . . G A
blockSeqs : . . . G G
blockSeqs : . . . G A
blockSeqs : . . . G A
blockSeqs : . . . T A
blockSeqs : . . . G G
blockSeqs : . . . G A
blockSeqs : . . . G A
blockSeqs : . . . T A
blockSeqs : . . . T C
blockSeqs : . . . G C
blockSeqs : . . . T A
blockSeqs : . . T C
blockSeqs : . . T C
blockSeqs : . . T C
blockSeqs : . . T C
blockSeqs : . . T C
blockSeqs : . . T C
blockSeqs : . . T C
blockSeqs : . . T C
blockSeqs : . . T C
blockSeqs : . . T C
blockSeqs : . . T C
blockSeqs : . . T C
blockSeqs : . . T C
blockSeqs : . . T C
blockSeqs : . . T C
blockSeqs : . . T C
blockSeqs : . . T C
blockSeqs : . . T T
blockSeqs : . . T C
blockSeqs : . . T C
blockSeqs : . . T C
blockSeqs : . . T C
blockSeqs : . . T C
blockSeqs : . . T A
blockSeqs : . . T C
blockSeqs : . . G C
blockSeqs : . . T C
blockSeqs : . . T C
blockSeqs : . . T C
blockSeqs : . . T C
blockSeqs : . . T A
blockSeqs : . . T .
blockSeqs : . . G .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . .
blockSeqCons :
originalCons : TAAGAAA-GTTTTG-TCTTGGTTT-ATC----A-TT-----CA-TGTCA--TATCTANATTTGA-TACAATACC----CAT-ACTT
finalCons : TAAGAAA-GTTTTG-TCTTGGTTT-ATC----A-TT-----CA-TGTCA--TATCTANATTTGA-TACAATACC----CAT-ACTT
Alignments
lowQualScore : 1 0 0 1111 0 11111 0 00 2 0 2 0000 0
lowQualScore : . . . .... . ..... . .. . . . .... .
lowQualScore : 4 5 4 3333 4 11111 4 66 1 4 5 9999 4
consensus : TAAGAAA-GTTTTG-TCTTGGTTT-ATC----A-TT-----CA-TGTCA--TATCTANATTTGA-TACAATACC----CAT-ACTT
Reference ( family-318 ) : TAAGAAA-GTTTTG-TCTTGGTTT-ATC----A-TT-----CA-TGTCA--TATCTANATTTGA-TACAATACC----CAT-ACTT
gi|83190 : TAAGAAA-GTTTTG-TCTTGGTTT-ATC----A-TT-----CA-TGTCA--TATCTAGATTTGA-TACGATACC----CAT-ACTT
gi|83191 : TAATAGA-GTTTTG-TCTTGGTTT-ATT----A-TT-----CA-TGTTA--TTTCTAGATTTGA-TATAATAGC----CAT-ACTT
gi|83192 : TAAGAAA-GTTTTG-TCTTGGTTT-ATC----A-TT-----CA-CGTCA--TATTTAAATTTGA-TACAATAAC----CAA-ACTT
gi|83193 : TAAGAAT-GTTTTA-TCTTAGTTT-ATA----A-TT-----CA-TGTCA--TATCTAGATTT-A-TACAATACC----CAT-ACTT
gi|83194 : TAAGAAA-GTTTTG-TCTTGGTTA-ATC----A-CT-----AT-TGCAA--TATCTAGATTTGA-TACAATACC----CAT-ACTT
gi|83195 : TAAGAAA-GTTTTG-TCTTGGTTA-ATC----A-CT-----AT-TGCAA--TATCTAGATTTGA-TACAATACC----CAT-ACTT
gi|83196 : TAAAAAA-GTTTTA-TTTTGATTT-ATC----A-TT-----CT-TGTCA--TATCTTGATTTGA-TACATTACC----CAT-ACTT
gi|83197 : TAAGACA-GTTTTG-TCTTTGTTT-ATC----A-TT-----CA-TGTCA--CATCTAGATTTTA-TACGGTAGC----CAT-ACTT
gi|83198 : TAAGACA-GTTTTG-TGTTGGTTT-ATC----A-TT-----CT-TGTCA--TATCTTGGTTTGA-TACAATATC----CGT-ACTT
gi|83199 : TAAAAAA-GTTTTG-TCTTGGTTT-ACT----A-TT-----CG-TGTCA--TATCTCGGTTTAA-TACAATGTC----CAT-ACTT
gi|83200 : TAAGAAA-GTTT-G-TCTTGGTTC-ATC----A-TT-----CA-CGTCA--TATCTAGATTTGA-TATACTACT----CAT-
gi|83201 : TAAGAAA-GTTTTG-TCTTAGTTC-ATC----A-TT-----CG-TTTCA--TATCTTGATTTGA-TACAGTAGT----CAT-ACTT
gi|83202 : TAAGAAA-GTTTCG-TCTTGGTTA-ATC----A-TT-----CA-TGTC----ATTTAGATTTTA-TACAATACC----TGT-ACTT
gi|83203 : TAAGAAA-GATATG-TCTTGGTTT-ACC----A-TT-----CA-TGTCA--TATGCAGATTCGA-TA-AATACC----CAT-ACTT
gi|83204 : TAATAAA-GTGTTG-TCTTGGTT--ACC----A-TT-----CA-TGTCA--CATCTAGATTTGA-T-CCATACC----CAT-ACTT
gi|83205 : TAAGAAA-GTTGTG-TCATGATTT-ATC----A-TT-----CA-TGTCA--CATCTAGATTTAA-CATGATACA----CAT-ACTT
gi|83206 : TAAGAAT-GTTTTA-TCTTGGTTT-ATC----A-TT-----CA-TGTTA--TAACTAGATTTGA-TATAATAAC----C
gi|83207 : TAAGAAC-ATTTTG-TCTTGGTTT-ACC----A-GT-----CA-TGTGA--TATCTAGATTTGA-TCAAATACC----CATAACTT
gi|83208 : TAAGAAA-GTTTTG-TCTTGGTTT-ATC----A-GT-----CA-TGTCA--T-TATAGATTTGA-AACAATATTCTGACAT-ACTT
gi|83209 : TAAGGAA-GTTTTG-TCTTGGTTT-ATC----T-TT-----CA-TATCA--TATCTTTTTTTGA-TACAATACT----TAT-ATTT
gi|83210 : TATGGAA-GTTTTA-TCTTGGTCT-ATC----A-CT-----CA-GGTTA--TAACTAGATTGGA-TCCAATACC----CAT-ACTT
gi|83211 : TAAGACA-ATTTTGATTTTGGATT-ATC----A-TT-----CA-TGTTG--TATCCAGATTTGA-TACACTACC----CAT-AATT
gi|83212 : TAAGAAA-GTTTTG-TCTTGGTTT-ATA----T-TT-----CA-CGTCA--TGTCTATATCCGA-GGCAATACC----TAT-GCTT
gi|83213 : TACGAAA-GTTTTG-TCCTAGCTT-GTC----A-TT-----CA-T-------ATCTAGATTTGA-TACAATACC----TGT-ACTT
gi|83214 : TAAGAAA-GTGTTG-TACTGGTTT-ATC----A-TT-----CA-TGCCA--TATCTAGATTGGA-TAC-ATAC
gi|83215 : TAAGAAA-GTTGTG-TATTGGTTT-ATT----A-TC-----CT-TATCA--TATATA-ATTTGA-TACAATACC----CTT-ACTT
gi|83216 : TAAGAA--GTTTTG-TCTTGGTTT-ATC----A-TT-----CT-TGCCA--TATCTAAATTTGA-
gi|83217 : TAAGACA-GCTTTT-TTTTGGTTA-ATC----A-TT-----CG-TGTTA--TATCTATATTTGA-TACAACACA----CGT-A
gi|83218 : TAAGGAC-GTTTTC-TCTTAGTT--ATC----A-TT-----CA-TGTCA--TATTTTTATTTAA-GACAATACC----CA--ACTT
gi|83219 : TATGAAG-GTTTTG-TCGTGTTTT-ATC----A-TT-----CA-TGTTA--TATATAGATAAGT-TAAAATACC----C
gi|83220 : TAACAAA-GTTTCA-CTTTGGTTTCATC----A-AT-----TA-TGTCA--TATCTAGATTTGA-TACA---------CAT-ACTT
gi|83221 : TAAGAAA-GTTTTT-TCTTGGTGT-ATC----A-TT-----GA-TGTCA--T-TCC-------A-TACGATACC----CAT-ACTT
gi|83222 : TAAGAAA-GTTTAG-CCTTG-TTT-ATC----A-TT-----AA-TGTTA--TATCTGTAGTTGATTAC-ATATC----CAT-ACTT
gi|83223 : TAAGAAA-GTTTGG-TTTTGATTC-ATC----A-T-------------------CTAGATTTGA-TACACTACC----CAT-ACTT
gi|83224 : TAAAGAG-TTTTTG-TCACGGCTT-ATC----A-TT-----CA-TGTCA--TATCTAGACTTCA-TAAAACACT----CCT-ATTT
gi|83225 : TAAGATA-ATTTTG-TCGTGGTTT-ATT----A-TT-----CA-TGATT--TTTCTATATTTGA-TACACAATC----CAT-ACT
gi|83226 : TAAGAAA-GTTGTG-TATTGGTTT-TTTT---A-TC-----CT-TATCA--TACATA-ATTTGA-TACAATACC----AAT-ACTT
gi|83227 : AAGAAA-GTTTTG-TCTGGGTTT-ATT----A-TT-----CA-TGTCA--TATCTAGATTTGA-TACAATACC----CAT-ACTT
gi|83228 : AAAAAA-GTTTTG-TCTTGGTTT-GTC----A-TT-----CAATGTCA--TATCTAAATTTGA-AACAATATC----CAT-ACT
gi|83229 : AAGAAA-GTTTTG-TCTT-GTTT-ATC----ATTT-----CA-TGTCT--TGTCTAGATTTCA-TACAATACC----CAT-AC
gi|83230 : AAGAAAAGTTTTG-TTTTGGTTT-AAC----A-TT-----TA-CGTCA--TATTTAGATTTGA-CACAATACC----CAT-A
gi|83231 : AAGAAAAGTTTTG-TTTTGGTTT-AAC----A-TT-----TA-CGTCA--TATTTAGATTTGA-CACAATACC----CAT-A
gi|83232 : AAGAAA-GTTTTG-TCTTAGTTT-AGC----A-TT-----CA-TGCCA--TAACTACATTTGA-T---ATACC----AAT-ATTT
gi|83233 : AAAAA-GTTTTG-TCTTGGTTC-ATC----A-TT-----GA-TGTCA--TATCTAGATTTGA-AACAATACA----TAT-ACCT
gi|83234 : AGGAA-GTTTTG-TTTTAGTTT-ATT----A-TT-----CA-TGTCA--TATTTAAATATAA-TACAATATC----CAT-ACTT
gi|83235 : AGGAA-GTTTTG-TCTTTGATT-ATC----A-TG-----CA-TGTCA--T------AGTTGA-TACAATACC----CAT-ACTT
gi|83236 : GAAA-GTTTTG-TCTTGGTTT-ATC----A-TT-----CA-TGTCG--TAT-TAGATTTGA-TACAATACC----CAT-ACTT
gi|83237 : GAAA-GCGTTG-TCTTGGTTT-ATC----A-TT-----CA-TGTCA--TATTTAGATTTGT-TACAATACC----CAT-ACTT
gi|83238 : GAAA-GCGTTG-TCTTGGTTT-ATC----A-TT-----CA-TGTAA--TATTTAGATTTGT-TACAGTACC----CAT-ACTT
gi|83239 : GAAA-GTTTCA-TCTTGGTTT-TTC----A-TT-----TA-TGACA--TATCTAGATCTGA-GACAATACC----CAT-ACTT
gi|83240 : GAAA-GTTTTG-TCTTGGTCT-ATC----A-AC-----CA-TGTCT--TACCTAGACTTGA-TGCAAT
gi|83241 : AAA-GTTTTG-TTTTAGTTT-ATC----A-TT-----CA-TGTCA--TATTTAGATTTGA-CAAAATACC----TAT-ATTT
gi|83242 : AAA-GTTTTG-TTTTAGTTT-ATC----A-TT-----CA-TGTCA--TATTTAGATTTGA-CAAAATACC----TAT-ATTT
gi|83243 : AAA-GTTTTG-TCTTGGTTA-ACC----A-TTTATACCA-TACCA--TATCTGGATTAGA-TACAATAAC----AAT-ACTT
gi|83244 : AA-GCTTTT-AATCGGTTT-ATC----A-TT-----CA-TGCCA--TATCTATATTTGA-TGAAATATC----CAT-ACTT
gi|83245 : AA-GTTTTG-CCTTGGTGA-ATC----A-TG-----CA-TGTCG--TATCTAGATTTGA-TATAATGCC----CAC-ATTT
gi|83246 : A-GTTTAA-TCTTGTTTC-ATC----A-TT-----CA-TATCG--TATCTGGATTTGA-TACAATACC----CAA-ACTT
gi|83247 : -GTTCAG-TCTTGGTGT-GTT----A-TT-----CG-TGTCA--GATATAGATTTGA-GACAATAGT----CAT-ACTT
gi|83248 : TTTTT-TCT-GGTTT-ATC----A-TT-----CA-TGTCA--TATCTATATTTGA-TCCTATACG----CAC-ACTT
gi|83249 : TTTTT-TTCTGGTTT-ATC----A-TT-----CA-TGTCA--TATCTATATTTGA-TCCTATACA----CAC-ACT
gi|83250 : TTTG-CCTTGATTT-ATC----A------------ATCA--TATCTAGATTTT--TACAAAACC----CAT-ACTT
gi|83251 : TTG-TCATGGTTT-ATC----A-TT-----CA-TGTCA--TATCTATATTTGA-TCCAATACC----CAT-ACT
gi|83252 : TTG-TCCTGGTGT-ATC----A-TT-----CA-TGTCA--TATCTATATTTGA-T-CAATACC----CAT-ACTT
gi|83253 : TTG-TCCTGGTTT-ATC----A-TT-----CA-AGTCA--TATCTATATTCGA-T-CAATACC----CAT-ACTT
gi|83254 : TTG-TCATGGATT-ATC----A-TT-----CA-TATCA--TATCTATATTTGA-TCCAATACC----CAT-ACTT
gi|83255 : TTG-TCCTGGATT-ATT----A-TT-----CA-TATCA--TATCTATATTTGA-TCCAATACC----CAT-ACTT
gi|83256 : TTG-TCCTGGTTT-ATC----A-TT-----AA-TGCCA--TCTCTATATTTGA-TCCAATACC----CAT-ACTT
gi|83257 : TTG-TCCTGGTTA-ATC----A-TG-----CA-TGTCA--TATCTATATTTGG-TCCAATACC----CAT-ACTT
gi|83258 : TTG-TCCTGGTTA-ATC----A-TG-----CA-TGTCA--TATCTATATTTGG-TCCAATACC----CAT-ACTT
gi|83259 : TTG-TCCTGGTTT-ATT----A-TG-----CA-TTTCA--TATCTATATTTGA-TCCAATACC----CAT-ACTT
gi|83260 : TTG-TCCTGGTTA-ATC----A-TG-----CA-TGTCA--TATCTATATTTGG-TCCAATACC----CAT-ACTT
gi|83261 : TTG-TCCTGGTGT-ATC----A-TT-----TA-TGTCA--TATCTATATTTGA-TCCAATACT----CAT-AC
gi|83262 : TTG-TCATGGTTT-ATC----A-TT-----CA-TGCCA--TATCTATATTTGA-TCCAATATC----AAT-ACTT
gi|83263 : TTG-TCCTGGTGT-ATC----A-TC-----CA-TGTCA--TATCTATATTTGA-T-CAATACC----CAT-AGTT
gi|83264 : TTG-TCATGGGTT-ATC----A-TT-----CA-TGCCA--TATCTATATTTGA-TCCAATACC----AAT-ACTT
gi|83265 : TTG-TCCTGGTTT-ATC----A-TT-----CA-AGTCA--TATCTATATTTGA-TCCTATACA----CAT-ACTT
gi|83266 : TTG-TCCTGGTTT-ATC----A-TT-----CA-TGTAA--TATCGATATTTGA-TCCAATACT----CAT-ATTT
gi|83267 : TTG-TCATGGTGT-ATC----A-TG-----CA-TGTCA--TATCTATATTTGA-TCCAATATT----CAT-ACTT
gi|83268 : TTG-TCCTGGTTT-ATC----A-TT-----CA-AGTCA--TATCTATATTTGA-TCCTATACA----CAT-ACCT
gi|83269 : TTG-TCCTGGTTT-ATC----A-TT-----CA-AGTCA--TATCCATATTTGA-TCCTATACA----CAT-ACTT
gi|83270 : TTG-TCCTGGNNN-NNNNNNNA-TT-----CA-TGTCA--TATCTATATTTGA-TCCAATACC----CAT-ACTT
gi|83271 : TTG-TCCTGGTTT-ATC----A-TT-----CA-AGTAA--TATCTATATTTGA-TTCAATATT----CAT-ATTT
gi|83272 : TTG-TCATGGTAT-ATC----A-TG-----CA-TGTCA--TATCTATATTTAA-TCCAATATT----CAT-ACTT
gi|83273 : TTG-TCATGGTC--ATC----A-TT-----CA-TGTCA--TATCTATATTTTA-TCCAATATT----CAT-ACTT
gi|83274 : TG-TCCTGGTTT-ATC----A-TT-----TA-TGTCA--TATCTATATTAGA-TCCAATACC----CAT-ACTT
gi|83275 : TG-TCATGGTT--ATC----A-TT-----CA-TGTCA--TATCTATATTTGA-TCCAGTACC----CAT-ACTT
gi|83276 : G-TCATGGTTT-ATC----A-TT-----CA-TGTCA--TATCTATATTTGA-TCCAATACC----CAT-ACT
gi|83277 : CTTGGTTT-ATC----A-TC-----AG-TGACA--TATCTAGATTTCA-GACAATACC----CAT-ACTT
gi|83278 : TGGTTT-ATC----A-TT-----CA-TGCCA--TATCTATATTTGA-TCCAATATC----AAT-ACTT
gi|83279 : TGGTTA-ATC----A-TC-----CA-TGCCA--TATCTATATTTGA-TCCAATACC----CAT-ACTT
gi|83280 : TGGTTA-ATC----A-TT-----CA-TGCCA--TATCTATATTTGA-TCCAATACC----AAT-ACT
gi|83281 : TGGTTA-ATT----A-TT-----CA-TGCCA--TATCAATATTTGA-TCCAATACC----CAT-ACTT
gi|83282 : TGGTAA-ATC----A-TT-----CA-TG-CA--TATCTATATTTGA-TCCAATACC----CAT-ACTT
gi|83283 : GGTTT-ATC----A-TT-----CA-TGTCA--TATCTATATTTGA-TCCAGTGCA----CAT-ACTT
gi|83284 : GGTTT-ATC----A-TT-----CA-TATCACTTATCTAGATTTGA-AACTATACC----TAT-ACCT