lowQualScore : 3333333333333333333 11111 000 111 11111
lowQualScore : ................... ..... ... ... .....
lowQualScore : 1111111111111111111 00000 777 333 00000
consensus : TGCATCAGTAGTAATATT-------------------ACA-----TAA---GGTTCTCG--CACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
Reference ( gi|53120 ) : TGCATCAGTAGTAATATT-------------------ACA-----TAA---GGTTCTCA--CACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53123 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---GGTTCTCA--CACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53122 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---GGTTCTCA--CACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53121 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---GGTTCTCA--CACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53124 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---GGTTCTCA--CACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53126 : TGCATCAGTATTAATATT-------------------ACA-----TAA---GGTTCTCA--CACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53125 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---GGTTCTCA--CACTCCTGCATCAGTATTAATA-----TTACATAAGGTTCTCA
gi|53128 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---GGTTCTCA--CACTCCTGCATCAGTATTAATA-----TTACATAAGGTTCT
gi|53127 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---TGTTCTCA--CACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53129 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---GGTTCTTG--CCCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53131 : TGCATCAGTAGTAATATT-------------------ACA-----CAA---GGTTCTCA--TACTGCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53130 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---GGTTCTTG--CACTCCTGCATCAGTAGTAATA-----TTACATAATGTTCTCA
gi|53132 : TGCTTCAGTAGTAATATT-------------------ACA-----TAA---GGTTCTTG--CACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53133 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---GGTTCTCA--CAATCCTGTATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53134 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---GGTTCTCA--CACTCCTACATCAGTAGAAATA-----TTACATAAGGTTCT
gi|53136 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---GATTCTTG--CACTCCTGCATCAGTAGTGATA-----TTACATAAGGTTCTCA
gi|53135 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---GGCTCTTG--CACTCCTGCATCAGTAGTAATA-----TTATATAAGGTTCTCA
gi|53137 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---GGTTCTCA--TACTCATGCATCAGTAGTAATA-----TTACATAAGTTTCTCA
gi|53139 : TGCATCAGTAGTAATATA-------------------ACA-----TAA---GGTTCTCA--CACTCCTACATCAGAAGTAATA-----TTACATAAGGTTCTCA
gi|53138 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---GGTTCTTT--CACTCCTGCATCAGTAGTAATA-----TAACATAAGGTTCTCA
gi|53141 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---GGTTCTCC--CACTCCTGCATCAGAAGTAATA-----TTACATAAGGTTCT
gi|53140 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---TGTTCTCA--CACTCCTGCATCAGTAGTAATA-----TTACATAATGTTCT
gi|53142 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---GGTTCTAA--CACTCCTGCATCAGTAGAAATA-----TTACATAAGGTTCT
gi|53143 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---AGTTCTTG--CCCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53144 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---GGCTCTCA--CACTCCTGCATCAGTAGTAATA-----TTACGAAAGGTTTTCA
gi|53148 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---GGTTCTCA--CACTCTTGCATCAGTAGTAATA-----TGACATAAGGTTTT
gi|53147 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---TGCTCTCA--CACTCCTGTATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53146 : TGCATCAGTAGTGATATT-------------------ACA-----TAA---GGTTCTCA--CACTCCTACATCAGTAGTAATA-----TTACATAAGCTTCT
gi|53145 : TGCATCAGTAGTAATATT-------------------ATA-----TAA---GGTTCTCA--CACTCCTGCATCAGTAGTGATA-----TTACATAAGTTTCT
gi|53149 : TACGTCAGTAGTAATATT-------------------ACA-----TAA---GGTTCTCA--CACTCCTGCATCAGTTGTAATA-----TTACATAAGGTTCT
gi|53151 : TACATCAGAAGTAATATT-------------------ACA-----TAA---GGTTCTCA--CACTCCTGTATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53150 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---GGTTCTTT--CACTCCTGCATCAGTAGTAATA-----TTATATAAGGTTCT
gi|53152 : TGCATCAGTAGAAATATT-------------------ACA-----TAA---GGTTCTTG--CACTCTTGCATCAGTAGTAATA-----TTACATAAGGTTCTC
gi|53153 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---GGGTCTTG--CTCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53155 : TGTATCAGTAGTAATATT-------------------ACA-----TAA---GGTTCTTG--CACTCCTGCATCAGTAGTAATA-----TTACATAAAGTTCT
gi|53154 : TGCATCAGTTGTAATATT-------------------ACA-----TAA---GGTTCTTG--CACTCCTGCATCAGTAGTAATA-----TTACATAATGTTCTCA
gi|53156 : TGCATCAGTAGTAATATT-------------------ACA-----CAA---GGTTCTCC--CACTCCTGCATCAGAAGTAATA-----TTACATAAGGTTCT
gi|53163 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---AGTTCTTG--CCCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53162 : TGTATCAGTAGTAATATT-------------------ACA-----TAA---GGTTCTTG--CCCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53161 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---TGTTCTTG--CACTCCTGCATCAGTAGTAATA-----TTACATAAGGCTCT
gi|53160 : TGTATCAGTAGTAATATT-------------------ACA-----TAA---GGTTCTTG--CCCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53159 : TGCATCAGTAGTAATATT-------------------ATA-----TAA---GGTTCTTG--CCCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53158 : TGCATCAGTAGTAATATT-------------------ATA-----TAA---GGTTCTTG--CCCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53157 : TGCATCAGTAGTGATATT-------------------ACA-----TAA---GTTTCTTG--CACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53165 : TGCATCAGTAGTAATATT-------------------ACA-----TTA---GGTTCTTG--CACTCCTGCATCAGTAGTAATA-----TTACATAAGATTCT
gi|53164 : TGTATCTGTAGTAATATT-------------------ACA-----TAA---GGTTCTCG--CACTCCTGCATCAGTAGTAATA-----TTACATAAAGTTCT
gi|53166 : TACATCAGTAGTAATTTT-------------------ACA-----TAA---TGTTCTCA--CACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTC
gi|53167 : TGCATCAGTAGTAACATT-------------------ACA-----TAA---GGTTCTTG--CCCTCATGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53168 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---GGTTCTTG--TTCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTC
gi|53172 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---GTTTCTCA--CACTCCTGTATTAGTAGTAATA-----TTACATCAGGTTCT
gi|53171 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---GGTTCTCA--AACTCATGAATCAGTAGTAATA-----TTACATAAGTTTCTCA
gi|53170 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---TGCTCTCA--CAATCCTGTATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53169 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---TGCTCTCA--CAATCCTGTATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53174 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---GGTTCTCA--CACTCCAGCATCAGTAGTGATA-----TTAAATAAAGTTCT
gi|53173 : TGAATCAGTAGTAATATT-------------------ACA-----TAA---GTTTCTCA--CACTCCTGTATTAGTAGTAATA-----TTACATAAGGTTCT
gi|53176 : TGCATCAGTAGTAATATT-------------------ACC-----TCA---GGTTCTTT--CACTCCTGCATCAGTAGTAATA-----TTACACAAGGTTCTCA
gi|53175 : TGTATCAGTAGTAATATT-------------------ACA-----TAA---GGTTCTTG--CCCTCCTGCATCAGTAGTAACA-----TTACATAAGGTTCT
gi|53177 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---AGTTCTTG--CCCTCCTGCATCAGTAGTAATA-----TTACATAAAGTTCT
gi|53178 : TGCATCAGTAGTAATATA-------------------ACA-----TAA---AGTTCTCA--CATTCCTGTATCTGTAGTAATA-----TTACATAAGGTTCTC
gi|53179 : TACATCAGTAGTAATTTT-------------------ACA-----TAA---TGTTCTCA--CACTCCCGCATCAGTAGTAATA-----TTACAAAAGGTTCTCA
gi|53180 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---GGCTCTTG--CACTCCTAAATCAGTAGTAATA-----TTATATAAGGTTCTC
gi|53184 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---GGTTCTTG--CCCTCTTGCATCAGTAGTAATA-----TTACATAATGCTCTCA
gi|53183 : TACATCAGTAGAAATATT-------------------ACA-----TAA---GGTTCTTG--CACTCTTGCATCAGTAGTAATA-----TTACACAAGGTTCTC
gi|53182 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---GGTTCTTG--CCCTCTTGCATCAGTAGTAATA-----TTACATAATGCTCTCA
gi|53181 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---GGTTCTTG--CCCTCTTGCATCAGTAGTAATA-----TTACATAATGCTCTCA
gi|53185 : TGTATCAGTAGTAATANN-------------------NNNNNNNNTAA---GGTTCTCA--CACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53186 : TGCATCAGTAGTGATATT-------------------ACA-----AAA---GGTTCTTG--CACTCCTGCATCAGTAGTGATA-----ATACATAAGGTTCTCA
gi|53187 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---GGTTATCA--GACTCATGCATAAGTAGTAATA-----TTACATAAGGTTCT
gi|53188 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---GGGTCTTG--CCCTCCTGCATCAGTAGTAATA-----TAACATAAAGTTCTCA
gi|53190 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---GGTTCCTT--CACTCCTACATCAGTAGTAATT-----TTACATAATGTTCTCA
gi|53189 : TGCATCAGTAGTAATATT-------------------ACA-----TAA---GGTTCCTT--CACTCCTACATCAGTAGTAATT-----TTACATAATGTTCTCA
gi|53191 : TGCATCAGTATTAATATT-------------------ACA-----TAA---GGTTCTTT--CACTCCAGCATCAGTAGTAATA-----TTATATAAGGTTCT
gi|53192 : TGCATCAGTAGTGATAAT-------------------ACA-----TAA---GGTTCTCA--CACTCCGGCATCAGTAGTGATA-----TTACATCAGGTTATCA
gi|53193 : TGCATCAGAAGTAATATT-------------------ACA-----TAA---GGTTCTTG--ATCTCCTACGTCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53194 : TGCATCAGTAGTGATTTT-------------------ACA-----TAA---GTTTCTTG--CACTCCTGCATAAGTAGTAATA-----TTACATAAGGTTCT
gi|53195 : TGTATTAGTAGTAATATT-------------------ACA-----TAA---GGTTCTTG--TCCTCCTGCATCAGTAGTAATA-----TTACATAAGGGTCT
gi|53196 : TGCATAAGTAGTAATATT-------------------ACA-----TAA---GGTTCTTG--CCCTCCTGCATCAGTAGTAATA-----TTACCTCAGGTTCT
gi|53197 : TGCATCAGTAGTAATATG-------------------ACA-----TAA---GGTTTTTG--TTCACCTTCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53198 : TGCATCAGTAGTGATATT-------------------ACA-----TAA-----TTTTCATGCACTCCTGCTTCAGTAGTAATA-----TTACATAAGGTTCT
gi|53199 : TGTATTAGTAGTAATATT-------------------ACA-----TCA---GGTTCTTG--TCCTCCTGCATCAGTAGTAATA-----TTACATAAGGGTCT
gi|53221 : TGCATCAGTAGTAATATT-------------------ATA-----TAA---GGTTCT
gi|53200 : gtaatattacataaggttctttcactccTGCATCAGTAGTAATATT-------------------ACG-----AAA---GGTTTTCA--CACGTCTGCATCAGTAGTGATA-----GTATATAAGGTTCT
gi|53201 : TGCATCAGTAGTGATAGT-------------------ATA-----TAA---GGTTCTTG--CCCTACTGCATCAGTAGTAATA-----TTACATTAGGTTCT
gi|53203 : TGCATAAGTAGTAATATT-------------------ACA-----TAA---GGTTCTTG--CACCCCTGCATCAGAAGTGATA-----TTTCATAAGTTTCT
gi|53202 : TGCTTCAGTAGTAATATT-------------------ACA-----TAA---GGTTCTTG--CACCCCATCATCAGTAGTGATA-----TTACATAAGTTTCT
gi|53204 : TACATCAGTAGTAATATT-------------------ACA-----TAA---GCTTCTTG--CCCTCCTGCATCAGTAGTAATA-----TTACATA
gi|53205 : TGCATCAGAAGTAATATT-------------------ACA-----TAA---GGTTCTTG--ATCTCCTGGTTCAGTAGTTATA-----TTACATAAGGTTCTCA
gi|53206 : TGCATCAGAAGTGATATT-------------------TCA-----TAA---GTTTCTTG--CACCCCTGCATCAGTAGTGATA-----TTACAAAAGGTTCT
gi|53207 : TGCATCAGTAGTAATATTACATANNNNNNNNNNTATTACA-----TAA---GCTTCTTG--CCCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53208 : TGCATTAGTAGTGATATA-------------------ACA-----TAACAAAATT---G--CACTCCTGCATCAGTAGTAATA-----TTACATAAGGCTCTCA
gi|53222 : TGCATCAGTAGTGATATT-------------------ACA-----TAA-----TTTTCA--
gi|53211 : attatataaggttctcacactccGCATCAGTAGTAATATT-------------------ATA-----TAA---GGTTCTTG--CCCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53212 : GCATCAGTAGTGATATT-------------------AAA-----TAA---AGTTCTTG--CACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTATCA
gi|53213 : GCATCAGTAGTAATATT-------------------ACA-----AAA---GGTTCTCA--CACTCAGGCATCTGTAGTAATA-----TTACATAAGGTTCT
gi|53214 : GCATCAGTAGTGATATT-------------------ACA-----TCA---GGTTATCA--CACTCCGGCATCAGTAGTGATA-----TTACATCAGGTTCT
gi|53215 : GCATCTGTAGTAATATT-------------------ACA-----TAA---GGTTCTTG--CCCTCCTGTATCAGTAGTAATANNNNNNNNNNTAAGGTTCTCA
gi|53217 : CATCAGTAGTGATATT-------------------ACA-----TAA---GTTTCTTG--CACTCCTGCATCAGTAGTAATA-----TTACATAAGGCTCT
gi|53218 : CATCAGTAGTAATATT-------------------ACA-----TAA---GGTTCTCA--CACTCCTGCATCAGTAGTAATA-----TTAC
gi|53219 : ATCAGTAGTAATATT-------------------ATA-----TAA---GGTTCTCC--CACTCCTGCATCAGTAGTGATT-----TTACATAAGTTTCT
gi|53220 : TCAGTAGTTATATT-------------------ACA-----TAA---GGTTCTCA--CACTCCTGCTTCAGTAGTAATA-----TTACATAAGGTTCT
gi|53221 : GTAATATT-------------------ACA-----TAA---GGTTCTTT--CACTCCTGCATCAGTAGTAATA-----TTATATAAGGTTCT
gi|53222 : ATT-------------------ATA-----TAA---GGTTCTCA--CACTCCTGCATCAGTAGTGATA-----TTACATAA--TTTTCA
gi|53204 : TACATCAGTAGTAATA-----TTACATAAGCTTCT
gi|53218 : CATCAGTAGTAATA-----TTACATAAGGTTCTCAtgccctcctgcatcagtagtaatattacata
Alignments
lowQualScore : 3333333333333333333 11111 000 11111
lowQualScore : ................... ..... ... .....
lowQualScore : 1111111111111111111 00000 777 00000
consensus : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCGCACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
Reference ( family-301 ) : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCGCACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53120 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53121 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53122 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53123 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53124 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53125 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCTGCATCAGTATTAATA-----TTACATAAGGTTCTCA
gi|53126 : TGCATCAGTATTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53127 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---TGTTCTCACACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53128 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCTGCATCAGTATTAATA-----TTACATAAGGTTCT
gi|53129 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCCCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53130 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCACTCCTGCATCAGTAGTAATA-----TTACATAATGTTCTCA
gi|53131 : TGCATCAGTAGTAATAT-------------------TACA-----CAA---GGTTCTCATACTGCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53132 : TGCTTCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53133 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACAATCCTGTATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53134 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCTACATCAGTAGAAATA-----TTACATAAGGTTCT
gi|53135 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGCTCTTGCACTCCTGCATCAGTAGTAATA-----TTATATAAGGTTCTCA
gi|53136 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GATTCTTGCACTCCTGCATCAGTAGTGATA-----TTACATAAGGTTCTCA
gi|53137 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCATACTCATGCATCAGTAGTAATA-----TTACATAAGTTTCTCA
gi|53138 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTTCACTCCTGCATCAGTAGTAATA-----TAACATAAGGTTCTCA
gi|53139 : TGCATCAGTAGTAATAT-------------------AACA-----TAA---GGTTCTCACACTCCTACATCAGAAGTAATA-----TTACATAAGGTTCTCA
gi|53140 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---TGTTCTCACACTCCTGCATCAGTAGTAATA-----TTACATAATGTTCT
gi|53141 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCCCACTCCTGCATCAGAAGTAATA-----TTACATAAGGTTCT
gi|53142 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTAACACTCCTGCATCAGTAGAAATA-----TTACATAAGGTTCT
gi|53143 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---AGTTCTTGCCCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53144 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGCTCTCACACTCCTGCATCAGTAGTAATA-----TTACGAAAGGTTTTCA
gi|53145 : TGCATCAGTAGTAATAT-------------------TATA-----TAA---GGTTCTCACACTCCTGCATCAGTAGTGATA-----TTACATAAGTTTCT
gi|53146 : TGCATCAGTAGTGATAT-------------------TACA-----TAA---GGTTCTCACACTCCTACATCAGTAGTAATA-----TTACATAAGCTTCT
gi|53147 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---TGCTCTCACACTCCTGTATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53148 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCTTGCATCAGTAGTAATA-----TGACATAAGGTTTT
gi|53149 : TACGTCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCTGCATCAGTTGTAATA-----TTACATAAGGTTCT
gi|53150 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTTCACTCCTGCATCAGTAGTAATA-----TTATATAAGGTTCT
gi|53151 : TACATCAGAAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCTGTATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53152 : TGCATCAGTAGAAATAT-------------------TACA-----TAA---GGTTCTTGCACTCTTGCATCAGTAGTAATA-----TTACATAAGGTTCTC
gi|53153 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGGTCTTGCTCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53154 : TGCATCAGTTGTAATAT-------------------TACA-----TAA---GGTTCTTGCACTCCTGCATCAGTAGTAATA-----TTACATAATGTTCTCA
gi|53155 : TGTATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCACTCCTGCATCAGTAGTAATA-----TTACATAAAGTTCT
gi|53156 : TGCATCAGTAGTAATAT-------------------TACA-----CAA---GGTTCTCCCACTCCTGCATCAGAAGTAATA-----TTACATAAGGTTCT
gi|53157 : TGCATCAGTAGTGATAT-------------------TACA-----TAA---GTTTCTTGCACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53158 : TGCATCAGTAGTAATAT-------------------TATA-----TAA---GGTTCTTGCCCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53159 : TGCATCAGTAGTAATAT-------------------TATA-----TAA---GGTTCTTGCCCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53160 : TGTATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCCCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53161 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---TGTTCTTGCACTCCTGCATCAGTAGTAATA-----TTACATAAGGCTCT
gi|53162 : TGTATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCCCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53163 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---AGTTCTTGCCCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53164 : TGTATCTGTAGTAATAT-------------------TACA-----TAA---GGTTCTCGCACTCCTGCATCAGTAGTAATA-----TTACATAAAGTTCT
gi|53165 : TGCATCAGTAGTAATAT-------------------TACA-----TTA---GGTTCTTGCACTCCTGCATCAGTAGTAATA-----TTACATAAGATTCT
gi|53166 : TACATCAGTAGTAATTT-------------------TACA-----TAA---TGTTCTCACACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTC
gi|53167 : TGCATCAGTAGTAACAT-------------------TACA-----TAA---GGTTCTTGCCCTCATGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53168 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGTTCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTC
gi|53169 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---TGCTCTCACAATCCTGTATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53170 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---TGCTCTCACAATCCTGTATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53171 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCAAACTCATGAATCAGTAGTAATA-----TTACATAAGTTTCTCA
gi|53172 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GTTTCTCACACTCCTGTATTAGTAGTAATA-----TTACATCAGGTTCT
gi|53173 : TGAATCAGTAGTAATAT-------------------TACA-----TAA---GTTTCTCACACTCCTGTATTAGTAGTAATA-----TTACATAAGGTTCT
gi|53174 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCAGCATCAGTAGTGATA-----TTAAATAAAGTTCT
gi|53175 : TGTATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCCCTCCTGCATCAGTAGTAACA-----TTACATAAGGTTCT
gi|53176 : TGCATCAGTAGTAATAT-------------------TACC-----TCA---GGTTCTTTCACTCCTGCATCAGTAGTAATA-----TTACACAAGGTTCTCA
gi|53177 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---AGTTCTTGCCCTCCTGCATCAGTAGTAATA-----TTACATAAAGTTCT
gi|53178 : TGCATCAGTAGTAATAT-------------------AACA-----TAA---AGTTCTCACATTCCTGTATCTGTAGTAATA-----TTACATAAGGTTCTC
gi|53179 : TACATCAGTAGTAATTT-------------------TACA-----TAA---TGTTCTCACACTCCCGCATCAGTAGTAATA-----TTACAAAAGGTTCTCA
gi|53180 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGCTCTTGCACTCCTAAATCAGTAGTAATA-----TTATATAAGGTTCTC
gi|53181 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCCCTCTTGCATCAGTAGTAATA-----TTACATAATGCTCTCA
gi|53182 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCCCTCTTGCATCAGTAGTAATA-----TTACATAATGCTCTCA
gi|53183 : TACATCAGTAGAAATAT-------------------TACA-----TAA---GGTTCTTGCACTCTTGCATCAGTAGTAATA-----TTACACAAGGTTCTC
gi|53184 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCCCTCTTGCATCAGTAGTAATA-----TTACATAATGCTCTCA
gi|53185 : TGTATCAGTAGTAATAN-------------------NNNNNNNNNTAA---GGTTCTCACACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53186 : TGCATCAGTAGTGATAT-------------------TACA-----AAA---GGTTCTTGCACTCCTGCATCAGTAGTGATA-----ATACATAAGGTTCTCA
gi|53187 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTATCAGACTCATGCATAAGTAGTAATA-----TTACATAAGGTTCT
gi|53188 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGGTCTTGCCCTCCTGCATCAGTAGTAATA-----TAACATAAAGTTCTCA
gi|53189 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCCTTCACTCCTACATCAGTAGTAATT-----TTACATAATGTTCTCA
gi|53190 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCCTTCACTCCTACATCAGTAGTAATT-----TTACATAATGTTCTCA
gi|53191 : TGCATCAGTATTAATAT-------------------TACA-----TAA---GGTTCTTTCACTCCAGCATCAGTAGTAATA-----TTATATAAGGTTCT
gi|53192 : TGCATCAGTAGTGATAA-------------------TACA-----TAA---GGTTCTCACACTCCGGCATCAGTAGTGATA-----TTACATCAGGTTATCA
gi|53193 : TGCATCAGAAGTAATAT-------------------TACA-----TAA---GGTTCTTGATCTCCTACGTCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53194 : TGCATCAGTAGTGATTT-------------------TACA-----TAA---GTTTCTTGCACTCCTGCATAAGTAGTAATA-----TTACATAAGGTTCT
gi|53195 : TGTATTAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGTCCTCCTGCATCAGTAGTAATA-----TTACATAAGGGTCT
gi|53196 : TGCATAAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCCCTCCTGCATCAGTAGTAATA-----TTACCTCAGGTTCT
gi|53197 : TGCATCAGTAGTAATAT-------------------GACA-----TAA---GGTTTTTGTTCACCTTCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53198 : TGCATCAGTAGTGATAT-------------------TACA-----TAA---TTTTCATGCACTCCTGCTTCAGTAGTAATA-----TTACATAAGGTTCT
gi|53199 : TGTATTAGTAGTAATAT-------------------TACA-----TCA---GGTTCTTGTCCTCCTGCATCAGTAGTAATA-----TTACATAAGGGTCT
gi|53200 : TGCATCAGTAGTAATAT-------------------TACG-----AAA---GGTTTTCACACGTCTGCATCAGTAGTGATA-----GTATATAAGGTTCT
gi|53201 : TGCATCAGTAGTGATAG-------------------TATA-----TAA---GGTTCTTGCCCTACTGCATCAGTAGTAATA-----TTACATTAGGTTCT
gi|53202 : TGCTTCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCACCCCATCATCAGTAGTGATA-----TTACATAAGTTTCT
gi|53203 : TGCATAAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCACCCCTGCATCAGAAGTGATA-----TTTCATAAGTTTCT
gi|53204 : TACATCAGTAGTAATAT-------------------TACA-----TAA---GCTTCTTGCCCTCCTGCATCAGTAGTAATA-----TTACATA
gi|53205 : TGCATCAGAAGTAATAT-------------------TACA-----TAA---GGTTCTTGATCTCCTGGTTCAGTAGTTATA-----TTACATAAGGTTCTCA
gi|53206 : TGCATCAGAAGTGATAT-------------------TTCA-----TAA---GTTTCTTGCACCCCTGCATCAGTAGTGATA-----TTACAAAAGGTTCT
gi|53207 : TGCATCAGTAGTAATATTACATANNNNNNNNNNTATTACA-----TAA---GCTTCTTGCCCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53208 : TGCATTAGTAGTGATAT-------------------AACA-----TAACAAAATT---GCACTCCTGCATCAGTAGTAATA-----TTACATAAGGCTCTCA
gi|53211 : GCATCAGTAGTAATAT-------------------TATA-----TAA---GGTTCTTGCCCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53212 : GCATCAGTAGTGATAT-------------------TAAA-----TAA---AGTTCTTGCACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTATCA
gi|53213 : GCATCAGTAGTAATAT-------------------TACA-----AAA---GGTTCTCACACTCAGGCATCTGTAGTAATA-----TTACATAAGGTTCT
gi|53214 : GCATCAGTAGTGATAT-------------------TACA-----TCA---GGTTATCACACTCCGGCATCAGTAGTGATA-----TTACATCAGGTTCT
gi|53215 : GCATCTGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCCCTCCTGTATCAGTAGTAATANNNNNNNNNNTAAGGTTCTCA
gi|53217 : CATCAGTAGTGATAT-------------------TACA-----TAA---GTTTCTTGCACTCCTGCATCAGTAGTAATA-----TTACATAAGGCTCT
gi|53218 : CATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCTGCATCAGTAGTAATA-----TTAC
gi|53219 : ATCAGTAGTAATAT-------------------TATA-----TAA---GGTTCTCCCACTCCTGCATCAGTAGTGATT-----TTACATAAGTTTCT
gi|53220 : TCAGTAGTTATAT-------------------TACA-----TAA---GGTTCTCACACTCCTGCTTCAGTAGTAATA-----TTACATAAGGTTCT
gi|53221 : GTAATAT-------------------TACA-----TAA---GGTTCTTTCACTCCTGCATCAGTAGTAATA-----TTATATAAGGTTCT
gi|53222 : AT-------------------TATA-----TAA---GGTTCTCACACTCCTGCATCAGTAGTGATA-----TTACATAA--TTTTCA
Alignments
lowQualScore : 3333333333333333333 11111 000 11111
lowQualScore : ................... ..... ... .....
lowQualScore : 1111111111111111111 00000 777 00000
consensus : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCGCACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
Reference ( family-301 ) : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCGCACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53120 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53121 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53122 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53123 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53124 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53125 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCTGCATCAGTATTAATA-----TTACATAAGGTTCTCA
gi|53126 : TGCATCAGTATTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53127 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---TGTTCTCACACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53128 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCTGCATCAGTATTAATA-----TTACATAAGGTTCT
gi|53129 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCCCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53130 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCACTCCTGCATCAGTAGTAATA-----TTACATAATGTTCTCA
gi|53131 : TGCATCAGTAGTAATAT-------------------TACA-----CAA---GGTTCTCATACTGCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53132 : TGCTTCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53133 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACAATCCTGTATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53134 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCTACATCAGTAGAAATA-----TTACATAAGGTTCT
gi|53135 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGCTCTTGCACTCCTGCATCAGTAGTAATA-----TTATATAAGGTTCTCA
gi|53136 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GATTCTTGCACTCCTGCATCAGTAGTGATA-----TTACATAAGGTTCTCA
gi|53137 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCATACTCATGCATCAGTAGTAATA-----TTACATAAGTTTCTCA
gi|53138 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTTCACTCCTGCATCAGTAGTAATA-----TAACATAAGGTTCTCA
gi|53139 : TGCATCAGTAGTAATAT-------------------AACA-----TAA---GGTTCTCACACTCCTACATCAGAAGTAATA-----TTACATAAGGTTCTCA
gi|53140 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---TGTTCTCACACTCCTGCATCAGTAGTAATA-----TTACATAATGTTCT
gi|53141 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCCCACTCCTGCATCAGAAGTAATA-----TTACATAAGGTTCT
gi|53142 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTAACACTCCTGCATCAGTAGAAATA-----TTACATAAGGTTCT
gi|53143 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---AGTTCTTGCCCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53144 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGCTCTCACACTCCTGCATCAGTAGTAATA-----TTACGAAAGGTTTTCA
gi|53145 : TGCATCAGTAGTAATAT-------------------TATA-----TAA---GGTTCTCACACTCCTGCATCAGTAGTGATA-----TTACATAAGTTTCT
gi|53146 : TGCATCAGTAGTGATAT-------------------TACA-----TAA---GGTTCTCACACTCCTACATCAGTAGTAATA-----TTACATAAGCTTCT
gi|53147 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---TGCTCTCACACTCCTGTATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53148 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCTTGCATCAGTAGTAATA-----TGACATAAGGTTTT
gi|53149 : TACGTCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCTGCATCAGTTGTAATA-----TTACATAAGGTTCT
gi|53150 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTTCACTCCTGCATCAGTAGTAATA-----TTATATAAGGTTCT
gi|53151 : TACATCAGAAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCTGTATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53152 : TGCATCAGTAGAAATAT-------------------TACA-----TAA---GGTTCTTGCACTCTTGCATCAGTAGTAATA-----TTACATAAGGTTCTC
gi|53153 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGGTCTTGCTCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53154 : TGCATCAGTTGTAATAT-------------------TACA-----TAA---GGTTCTTGCACTCCTGCATCAGTAGTAATA-----TTACATAATGTTCTCA
gi|53155 : TGTATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCACTCCTGCATCAGTAGTAATA-----TTACATAAAGTTCT
gi|53156 : TGCATCAGTAGTAATAT-------------------TACA-----CAA---GGTTCTCCCACTCCTGCATCAGAAGTAATA-----TTACATAAGGTTCT
gi|53157 : TGCATCAGTAGTGATAT-------------------TACA-----TAA---GTTTCTTGCACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53158 : TGCATCAGTAGTAATAT-------------------TATA-----TAA---GGTTCTTGCCCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53159 : TGCATCAGTAGTAATAT-------------------TATA-----TAA---GGTTCTTGCCCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53160 : TGTATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCCCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53161 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---TGTTCTTGCACTCCTGCATCAGTAGTAATA-----TTACATAAGGCTCT
gi|53162 : TGTATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCCCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53163 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---AGTTCTTGCCCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53164 : TGTATCTGTAGTAATAT-------------------TACA-----TAA---GGTTCTCGCACTCCTGCATCAGTAGTAATA-----TTACATAAAGTTCT
gi|53165 : TGCATCAGTAGTAATAT-------------------TACA-----TTA---GGTTCTTGCACTCCTGCATCAGTAGTAATA-----TTACATAAGATTCT
gi|53166 : TACATCAGTAGTAATTT-------------------TACA-----TAA---TGTTCTCACACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTC
gi|53167 : TGCATCAGTAGTAACAT-------------------TACA-----TAA---GGTTCTTGCCCTCATGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53168 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGTTCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTC
gi|53169 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---TGCTCTCACAATCCTGTATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53170 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---TGCTCTCACAATCCTGTATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53171 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCAAACTCATGAATCAGTAGTAATA-----TTACATAAGTTTCTCA
gi|53172 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GTTTCTCACACTCCTGTATTAGTAGTAATA-----TTACATCAGGTTCT
gi|53173 : TGAATCAGTAGTAATAT-------------------TACA-----TAA---GTTTCTCACACTCCTGTATTAGTAGTAATA-----TTACATAAGGTTCT
gi|53174 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCAGCATCAGTAGTGATA-----TTAAATAAAGTTCT
gi|53175 : TGTATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCCCTCCTGCATCAGTAGTAACA-----TTACATAAGGTTCT
gi|53176 : TGCATCAGTAGTAATAT-------------------TACC-----TCA---GGTTCTTTCACTCCTGCATCAGTAGTAATA-----TTACACAAGGTTCTCA
gi|53177 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---AGTTCTTGCCCTCCTGCATCAGTAGTAATA-----TTACATAAAGTTCT
gi|53178 : TGCATCAGTAGTAATAT-------------------AACA-----TAA---AGTTCTCACATTCCTGTATCTGTAGTAATA-----TTACATAAGGTTCTC
gi|53179 : TACATCAGTAGTAATTT-------------------TACA-----TAA---TGTTCTCACACTCCCGCATCAGTAGTAATA-----TTACAAAAGGTTCTCA
gi|53180 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGCTCTTGCACTCCTAAATCAGTAGTAATA-----TTATATAAGGTTCTC
gi|53181 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCCCTCTTGCATCAGTAGTAATA-----TTACATAATGCTCTCA
gi|53182 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCCCTCTTGCATCAGTAGTAATA-----TTACATAATGCTCTCA
gi|53183 : TACATCAGTAGAAATAT-------------------TACA-----TAA---GGTTCTTGCACTCTTGCATCAGTAGTAATA-----TTACACAAGGTTCTC
gi|53184 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCCCTCTTGCATCAGTAGTAATA-----TTACATAATGCTCTCA
gi|53185 : TGTATCAGTAGTAATAN-------------------NNNNNNNNNTAA---GGTTCTCACACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53186 : TGCATCAGTAGTGATAT-------------------TACA-----AAA---GGTTCTTGCACTCCTGCATCAGTAGTGATA-----ATACATAAGGTTCTCA
gi|53187 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTATCAGACTCATGCATAAGTAGTAATA-----TTACATAAGGTTCT
gi|53188 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGGTCTTGCCCTCCTGCATCAGTAGTAATA-----TAACATAAAGTTCTCA
gi|53189 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCCTTCACTCCTACATCAGTAGTAATT-----TTACATAATGTTCTCA
gi|53190 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCCTTCACTCCTACATCAGTAGTAATT-----TTACATAATGTTCTCA
gi|53191 : TGCATCAGTATTAATAT-------------------TACA-----TAA---GGTTCTTTCACTCCAGCATCAGTAGTAATA-----TTATATAAGGTTCT
gi|53192 : TGCATCAGTAGTGATAA-------------------TACA-----TAA---GGTTCTCACACTCCGGCATCAGTAGTGATA-----TTACATCAGGTTATCA
gi|53193 : TGCATCAGAAGTAATAT-------------------TACA-----TAA---GGTTCTTGATCTCCTACGTCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53194 : TGCATCAGTAGTGATTT-------------------TACA-----TAA---GTTTCTTGCACTCCTGCATAAGTAGTAATA-----TTACATAAGGTTCT
gi|53195 : TGTATTAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGTCCTCCTGCATCAGTAGTAATA-----TTACATAAGGGTCT
gi|53196 : TGCATAAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCCCTCCTGCATCAGTAGTAATA-----TTACCTCAGGTTCT
gi|53197 : TGCATCAGTAGTAATAT-------------------GACA-----TAA---GGTTTTTGTTCACCTTCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53198 : TGCATCAGTAGTGATAT-------------------TACA-----TAA---TTTTCATGCACTCCTGCTTCAGTAGTAATA-----TTACATAAGGTTCT
gi|53199 : TGTATTAGTAGTAATAT-------------------TACA-----TCA---GGTTCTTGTCCTCCTGCATCAGTAGTAATA-----TTACATAAGGGTCT
gi|53200 : TGCATCAGTAGTAATAT-------------------TACG-----AAA---GGTTTTCACACGTCTGCATCAGTAGTGATA-----GTATATAAGGTTCT
gi|53201 : TGCATCAGTAGTGATAG-------------------TATA-----TAA---GGTTCTTGCCCTACTGCATCAGTAGTAATA-----TTACATTAGGTTCT
gi|53202 : TGCTTCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCACCCCATCATCAGTAGTGATA-----TTACATAAGTTTCT
gi|53203 : TGCATAAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCACCCCTGCATCAGAAGTGATA-----TTTCATAAGTTTCT
gi|53204 : TACATCAGTAGTAATAT-------------------TACA-----TAA---GCTTCTTGCCCTCCTGCATCAGTAGTAATA-----TTACATA
gi|53205 : TGCATCAGAAGTAATAT-------------------TACA-----TAA---GGTTCTTGATCTCCTGGTTCAGTAGTTATA-----TTACATAAGGTTCTCA
gi|53206 : TGCATCAGAAGTGATAT-------------------TTCA-----TAA---GTTTCTTGCACCCCTGCATCAGTAGTGATA-----TTACAAAAGGTTCT
gi|53207 : TGCATCAGTAGTAATATTACATANNNNNNNNNNTATTACA-----TAA---GCTTCTTGCCCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53208 : TGCATTAGTAGTGATAT-------------------AACA-----TAACAAAATT---GCACTCCTGCATCAGTAGTAATA-----TTACATAAGGCTCTCA
gi|53211 : GCATCAGTAGTAATAT-------------------TATA-----TAA---GGTTCTTGCCCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53212 : GCATCAGTAGTGATAT-------------------TAAA-----TAA---AGTTCTTGCACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTATCA
gi|53213 : GCATCAGTAGTAATAT-------------------TACA-----AAA---GGTTCTCACACTCAGGCATCTGTAGTAATA-----TTACATAAGGTTCT
gi|53214 : GCATCAGTAGTGATAT-------------------TACA-----TCA---GGTTATCACACTCCGGCATCAGTAGTGATA-----TTACATCAGGTTCT
gi|53215 : GCATCTGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCCCTCCTGTATCAGTAGTAATANNNNNNNNNNTAAGGTTCTCA
gi|53217 : CATCAGTAGTGATAT-------------------TACA-----TAA---GTTTCTTGCACTCCTGCATCAGTAGTAATA-----TTACATAAGGCTCT
gi|53218 : CATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCTGCATCAGTAGTAATA-----TTAC
gi|53219 : ATCAGTAGTAATAT-------------------TATA-----TAA---GGTTCTCCCACTCCTGCATCAGTAGTGATT-----TTACATAAGTTTCT
gi|53220 : TCAGTAGTTATAT-------------------TACA-----TAA---GGTTCTCACACTCCTGCTTCAGTAGTAATA-----TTACATAAGGTTCT
gi|53221 : GTAATAT-------------------TACA-----TAA---GGTTCTTTCACTCCTGCATCAGTAGTAATA-----TTATATAAGGTTCT
gi|53222 : AT-------------------TATA-----TAA---GGTTCTCACACTCCTGCATCAGTAGTGATA-----TTACATAA--TTTTCA
blockSeqs : TACATANNNNNNNNNNTAT NNNNN
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blockSeqCons :
originalCons : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCGCACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
finalCons : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCGCACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
Alignments
lowQualScore : 3333333333333333333 11111 000 11111
lowQualScore : ................... ..... ... .....
lowQualScore : 1111111111111111111 00000 777 00000
consensus : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCGCACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
Reference ( family-301 ) : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCGCACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53120 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53121 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53122 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53123 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53124 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53125 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCTGCATCAGTATTAATA-----TTACATAAGGTTCTCA
gi|53126 : TGCATCAGTATTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53127 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---TGTTCTCACACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53128 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCTGCATCAGTATTAATA-----TTACATAAGGTTCT
gi|53129 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCCCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53130 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCACTCCTGCATCAGTAGTAATA-----TTACATAATGTTCTCA
gi|53131 : TGCATCAGTAGTAATAT-------------------TACA-----CAA---GGTTCTCATACTGCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53132 : TGCTTCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53133 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACAATCCTGTATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53134 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCTACATCAGTAGAAATA-----TTACATAAGGTTCT
gi|53135 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGCTCTTGCACTCCTGCATCAGTAGTAATA-----TTATATAAGGTTCTCA
gi|53136 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GATTCTTGCACTCCTGCATCAGTAGTGATA-----TTACATAAGGTTCTCA
gi|53137 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCATACTCATGCATCAGTAGTAATA-----TTACATAAGTTTCTCA
gi|53138 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTTCACTCCTGCATCAGTAGTAATA-----TAACATAAGGTTCTCA
gi|53139 : TGCATCAGTAGTAATAT-------------------AACA-----TAA---GGTTCTCACACTCCTACATCAGAAGTAATA-----TTACATAAGGTTCTCA
gi|53140 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---TGTTCTCACACTCCTGCATCAGTAGTAATA-----TTACATAATGTTCT
gi|53141 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCCCACTCCTGCATCAGAAGTAATA-----TTACATAAGGTTCT
gi|53142 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTAACACTCCTGCATCAGTAGAAATA-----TTACATAAGGTTCT
gi|53143 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---AGTTCTTGCCCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53144 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGCTCTCACACTCCTGCATCAGTAGTAATA-----TTACGAAAGGTTTTCA
gi|53145 : TGCATCAGTAGTAATAT-------------------TATA-----TAA---GGTTCTCACACTCCTGCATCAGTAGTGATA-----TTACATAAGTTTCT
gi|53146 : TGCATCAGTAGTGATAT-------------------TACA-----TAA---GGTTCTCACACTCCTACATCAGTAGTAATA-----TTACATAAGCTTCT
gi|53147 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---TGCTCTCACACTCCTGTATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53148 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCTTGCATCAGTAGTAATA-----TGACATAAGGTTTT
gi|53149 : TACGTCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCTGCATCAGTTGTAATA-----TTACATAAGGTTCT
gi|53150 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTTCACTCCTGCATCAGTAGTAATA-----TTATATAAGGTTCT
gi|53151 : TACATCAGAAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCTGTATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53152 : TGCATCAGTAGAAATAT-------------------TACA-----TAA---GGTTCTTGCACTCTTGCATCAGTAGTAATA-----TTACATAAGGTTCTC
gi|53153 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGGTCTTGCTCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53154 : TGCATCAGTTGTAATAT-------------------TACA-----TAA---GGTTCTTGCACTCCTGCATCAGTAGTAATA-----TTACATAATGTTCTCA
gi|53155 : TGTATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCACTCCTGCATCAGTAGTAATA-----TTACATAAAGTTCT
gi|53156 : TGCATCAGTAGTAATAT-------------------TACA-----CAA---GGTTCTCCCACTCCTGCATCAGAAGTAATA-----TTACATAAGGTTCT
gi|53157 : TGCATCAGTAGTGATAT-------------------TACA-----TAA---GTTTCTTGCACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53158 : TGCATCAGTAGTAATAT-------------------TATA-----TAA---GGTTCTTGCCCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53159 : TGCATCAGTAGTAATAT-------------------TATA-----TAA---GGTTCTTGCCCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53160 : TGTATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCCCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53161 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---TGTTCTTGCACTCCTGCATCAGTAGTAATA-----TTACATAAGGCTCT
gi|53162 : TGTATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCCCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53163 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---AGTTCTTGCCCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53164 : TGTATCTGTAGTAATAT-------------------TACA-----TAA---GGTTCTCGCACTCCTGCATCAGTAGTAATA-----TTACATAAAGTTCT
gi|53165 : TGCATCAGTAGTAATAT-------------------TACA-----TTA---GGTTCTTGCACTCCTGCATCAGTAGTAATA-----TTACATAAGATTCT
gi|53166 : TACATCAGTAGTAATTT-------------------TACA-----TAA---TGTTCTCACACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTC
gi|53167 : TGCATCAGTAGTAACAT-------------------TACA-----TAA---GGTTCTTGCCCTCATGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53168 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGTTCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTC
gi|53169 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---TGCTCTCACAATCCTGTATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53170 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---TGCTCTCACAATCCTGTATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53171 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCAAACTCATGAATCAGTAGTAATA-----TTACATAAGTTTCTCA
gi|53172 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GTTTCTCACACTCCTGTATTAGTAGTAATA-----TTACATCAGGTTCT
gi|53173 : TGAATCAGTAGTAATAT-------------------TACA-----TAA---GTTTCTCACACTCCTGTATTAGTAGTAATA-----TTACATAAGGTTCT
gi|53174 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCAGCATCAGTAGTGATA-----TTAAATAAAGTTCT
gi|53175 : TGTATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCCCTCCTGCATCAGTAGTAACA-----TTACATAAGGTTCT
gi|53176 : TGCATCAGTAGTAATAT-------------------TACC-----TCA---GGTTCTTTCACTCCTGCATCAGTAGTAATA-----TTACACAAGGTTCTCA
gi|53177 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---AGTTCTTGCCCTCCTGCATCAGTAGTAATA-----TTACATAAAGTTCT
gi|53178 : TGCATCAGTAGTAATAT-------------------AACA-----TAA---AGTTCTCACATTCCTGTATCTGTAGTAATA-----TTACATAAGGTTCTC
gi|53179 : TACATCAGTAGTAATTT-------------------TACA-----TAA---TGTTCTCACACTCCCGCATCAGTAGTAATA-----TTACAAAAGGTTCTCA
gi|53180 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGCTCTTGCACTCCTAAATCAGTAGTAATA-----TTATATAAGGTTCTC
gi|53181 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCCCTCTTGCATCAGTAGTAATA-----TTACATAATGCTCTCA
gi|53182 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCCCTCTTGCATCAGTAGTAATA-----TTACATAATGCTCTCA
gi|53183 : TACATCAGTAGAAATAT-------------------TACA-----TAA---GGTTCTTGCACTCTTGCATCAGTAGTAATA-----TTACACAAGGTTCTC
gi|53184 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCCCTCTTGCATCAGTAGTAATA-----TTACATAATGCTCTCA
gi|53185 : TGTATCAGTAGTAATAN-------------------NNNNNNNNNTAA---GGTTCTCACACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53186 : TGCATCAGTAGTGATAT-------------------TACA-----AAA---GGTTCTTGCACTCCTGCATCAGTAGTGATA-----ATACATAAGGTTCTCA
gi|53187 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTATCAGACTCATGCATAAGTAGTAATA-----TTACATAAGGTTCT
gi|53188 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGGTCTTGCCCTCCTGCATCAGTAGTAATA-----TAACATAAAGTTCTCA
gi|53189 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCCTTCACTCCTACATCAGTAGTAATT-----TTACATAATGTTCTCA
gi|53190 : TGCATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCCTTCACTCCTACATCAGTAGTAATT-----TTACATAATGTTCTCA
gi|53191 : TGCATCAGTATTAATAT-------------------TACA-----TAA---GGTTCTTTCACTCCAGCATCAGTAGTAATA-----TTATATAAGGTTCT
gi|53192 : TGCATCAGTAGTGATAA-------------------TACA-----TAA---GGTTCTCACACTCCGGCATCAGTAGTGATA-----TTACATCAGGTTATCA
gi|53193 : TGCATCAGAAGTAATAT-------------------TACA-----TAA---GGTTCTTGATCTCCTACGTCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53194 : TGCATCAGTAGTGATTT-------------------TACA-----TAA---GTTTCTTGCACTCCTGCATAAGTAGTAATA-----TTACATAAGGTTCT
gi|53195 : TGTATTAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGTCCTCCTGCATCAGTAGTAATA-----TTACATAAGGGTCT
gi|53196 : TGCATAAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCCCTCCTGCATCAGTAGTAATA-----TTACCTCAGGTTCT
gi|53197 : TGCATCAGTAGTAATAT-------------------GACA-----TAA---GGTTTTTGTTCACCTTCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53198 : TGCATCAGTAGTGATAT-------------------TACA-----TAA---TTTTCATGCACTCCTGCTTCAGTAGTAATA-----TTACATAAGGTTCT
gi|53199 : TGTATTAGTAGTAATAT-------------------TACA-----TCA---GGTTCTTGTCCTCCTGCATCAGTAGTAATA-----TTACATAAGGGTCT
gi|53200 : TGCATCAGTAGTAATAT-------------------TACG-----AAA---GGTTTTCACACGTCTGCATCAGTAGTGATA-----GTATATAAGGTTCT
gi|53201 : TGCATCAGTAGTGATAG-------------------TATA-----TAA---GGTTCTTGCCCTACTGCATCAGTAGTAATA-----TTACATTAGGTTCT
gi|53202 : TGCTTCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCACCCCATCATCAGTAGTGATA-----TTACATAAGTTTCT
gi|53203 : TGCATAAGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCACCCCTGCATCAGAAGTGATA-----TTTCATAAGTTTCT
gi|53204 : TACATCAGTAGTAATAT-------------------TACA-----TAA---GCTTCTTGCCCTCCTGCATCAGTAGTAATA-----TTACATA
gi|53205 : TGCATCAGAAGTAATAT-------------------TACA-----TAA---GGTTCTTGATCTCCTGGTTCAGTAGTTATA-----TTACATAAGGTTCTCA
gi|53206 : TGCATCAGAAGTGATAT-------------------TTCA-----TAA---GTTTCTTGCACCCCTGCATCAGTAGTGATA-----TTACAAAAGGTTCT
gi|53207 : TGCATCAGTAGTAATATTACATANNNNNNNNNNTATTACA-----TAA---GCTTCTTGCCCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCT
gi|53208 : TGCATTAGTAGTGATAT-------------------AACA-----TAACAAAATT---GCACTCCTGCATCAGTAGTAATA-----TTACATAAGGCTCTCA
gi|53211 : GCATCAGTAGTAATAT-------------------TATA-----TAA---GGTTCTTGCCCTCCTGCATCAGTAGTAATA-----TTACATAAGGTTCTCA
gi|53212 : GCATCAGTAGTGATAT-------------------TAAA-----TAA---AGTTCTTGCACTCCTGCATCAGTAGTAATA-----TTACATAAGGTTATCA
gi|53213 : GCATCAGTAGTAATAT-------------------TACA-----AAA---GGTTCTCACACTCAGGCATCTGTAGTAATA-----TTACATAAGGTTCT
gi|53214 : GCATCAGTAGTGATAT-------------------TACA-----TCA---GGTTATCACACTCCGGCATCAGTAGTGATA-----TTACATCAGGTTCT
gi|53215 : GCATCTGTAGTAATAT-------------------TACA-----TAA---GGTTCTTGCCCTCCTGTATCAGTAGTAATANNNNNNNNNNTAAGGTTCTCA
gi|53217 : CATCAGTAGTGATAT-------------------TACA-----TAA---GTTTCTTGCACTCCTGCATCAGTAGTAATA-----TTACATAAGGCTCT
gi|53218 : CATCAGTAGTAATAT-------------------TACA-----TAA---GGTTCTCACACTCCTGCATCAGTAGTAATA-----TTAC
gi|53219 : ATCAGTAGTAATAT-------------------TATA-----TAA---GGTTCTCCCACTCCTGCATCAGTAGTGATT-----TTACATAAGTTTCT
gi|53220 : TCAGTAGTTATAT-------------------TACA-----TAA---GGTTCTCACACTCCTGCTTCAGTAGTAATA-----TTACATAAGGTTCT
gi|53221 : GTAATAT-------------------TACA-----TAA---GGTTCTTTCACTCCTGCATCAGTAGTAATA-----TTATATAAGGTTCT
gi|53222 : AT-------------------TATA-----TAA---GGTTCTCACACTCCTGCATCAGTAGTGATA-----TTACATAA--TTTTCA