lowQualScore : 111 11
lowQualScore : 11 33 00 2 0 0 0000 000 66 7
lowQualScore : .. .. .. . . . .... ... .. .
lowQualScore : 11 55 77 2 8 4 9999 000 22 1
consensus : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTCAC---CCAAGGANCATTT
Reference ( gi|5642 ) : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTCAC---CCAGTGAACATTT
gi|5636 : TACTATAGCT--TATATA--GT--AAACTAACCCC-AACCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTCAC---CCAAGGACCATTT
gi|5635 : TACTATAGCT--TATATA--GT--AAACTAACCCC-AGCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAAGGTCAT---CCAAGGATCATTT
gi|5624 : TACTATAGCT--CATATA--GT--AAACTAACCAC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGGTTGAACAAACT----TGGTAGAGGGTCAC---CCAAGGATCATTT
gi|5670 : cgTACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACTAACC----TGCTAGAGGGTCAC---TTAAGGAACATTT
gi|5678 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCACCTGGCTGCCATG-TTATT-GA-CGAATCAAGATGGCTTGAACAAATT----TGATAGAGGGTCAC---CCAATGAACATTT
gi|5632 : TACTATAGCT--TATATA--GT--AAACTAACCCC-GCCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5659 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGAGTC
gi|5675 : TACTATAGCT--TATATA--GT--AAACTAACCCC-AACCCCTGGCCGCCATG-TTTTTTGA-CAAATCAAGATGCCTTGACCAAACT----TGGTAGAGGGTCAC---CCAAGGATCATTT
gi|5668 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTGTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5669 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATGTTTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5644 : TACTATAGCT--TATATA--GT--AAACTAATCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTAAACAAACT----TGGTAGAGGGTC
gi|5674 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTTA-CAAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5652 : TACTATAGCT--TATATA--GT--AAACTAACCCC-AGCCCCTGGCCACCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5639 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCACCATG-TTTTCTGA-CGAATCAAGATGACTTGAACAAACT----TGGTAGAGGGTC
gi|5667 : TACTATAGCT--TATATA--GT--AAACTAACTCC-ACCCCCTGGCCGCCATG--TTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5637 : TACTATAGCT--TATATA--GT--AAACTAACCCC-AGCCCCTTGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5643 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATAAAGATGGCTTTAACAAACT----TGGTAGAGGGTC
gi|5671 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGACTGCCATG-TTTTTTGA-CGAATCAATATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5663 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTAA-AGAATCAAGATGGCTTGAACAAACT----TGGTAGAAGGTC
gi|5648 : TACTATAGCT--TATATA--GT--AAACTAACTCC-ACCCCCTGGCCCCCATG-TTTTTTAA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5638 : TACTATAGCT--TATATA--GT--AAACTTACCCC-ACCCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGACTTGAACAAACT----TGGTAGAGGGTC
gi|5628 : TACTATAGCT--TATATA--GT--AAACTAACCCC-GTCCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGAATGCTTGAACAAATT----TGGGAGAGGGTCAC---CCAAGGACCATTT
gi|5660 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCACCTGGCCGCCATG-TTTTTTGA-TGAATCAAGATGGCTTTAACAAACT----TGGTAGAGGGTC
gi|5627 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ATCCCCTGGCCGCCATG-TTTTTTGA-TGAATCAAGATGACTTGAACAACCT----TGGTAGAGGGTC
gi|5631 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ATTCCCTGGCCGCCATG-TTTTTTGA-CGAATCAATATGACTTGAACAAACT----TGGTAGAGGGTC
gi|5641 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCTGCCTTG-TTTTTTGA-CGAATCAAGATGACTTAAACAAACT----TGGTAGAGGGTC
gi|5650 : TACTATAGCT--TATATA--GT--AAACTAACCCT-ACCCCCTGGCCACCATG-TTTTTTGA-CGAATCAAGATAACTTGAACAAACT----TGGTGGAGGGTC
gi|5665 : TACTATAGCT--TATATA--GT--AAATTAACCCC-AACCCCTGGCTGCCATGTTTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5658 : TACTATAGCT--TATATA--GT--AAACTAACTTC-ACCCCCTGGCTGCCATG-TTTTTTGA-CAAATCAAGATGGGTTGAACAAACT----TGGTAGAGGGTC
gi|5657 : TACTATAGCT--TATATA--AT--AAACTAACCCC-TCTTCCTGGTTGCCATG-TTTTTTGA-CGAATAAAGATGGGTTGAACAAACT----TAGTAGAGGGTCAC---CTAAGGAACATTT
gi|5634 : TACTATAGCT--TATATA--GT--AAAGTATCCCC-AACCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTTAACAAACT----TGGTAAAAGGTCAC---CCGAGGATCATTT
gi|5633 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ATCCCCTGGCTGCCATG-ATTTTTGA-CGAGTCAAGATGGGTTGAACAAACT----TGGTAGAGGGTC
gi|5629 : TACTATAGCTTATATATA--GT---AACTAACCCC-ATCCCCTGGTCGCCATG--TTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5625 : TACAATAGCT--TTTACA--GT--AAACTAACCCC-AACCCCTGGCCGCCATG-TTTTTTAA-CGAATCAACATGGCTTAAACAAACT----TGGTAGAGGGTC
gi|5672 : aTACTATAGCT--TATATA--GT--AAACTAACCCC-ATCCCCTGGCTACCATG-TTTTAAGA-CGAATCAAGATGGTTTGAACAAACT----TGGT
gi|5618 : TACAATA-CA--TATATAAAG---AAAATAACCCTTGTTCCCTGGCTGCCATG-TTTTTAAA-CGGATCAAGTTGATTTTAGCTATTT----GGGTAAAGGGTCTCGTACTGATGAACATTTtggtggatc
gi|5615 : tgtatcattagtggaagagaagaaattgtttccctctgttgaaaataacacaTACAATA-CA--TATATAAAG---AAAATAACCCTTGTTCCCTGGCTGCCATG-TTTTTAAA-CGGATCAAGTTGATTTTAGCTATTT----GGGTAGAGGGTCTCATACTGATGATCATTTgta
gi|5616 : tgtatcattagtggaagagaagaaattgtttccctctgttgaaaataacacaTACAATA-CA--TATATAAAG---AAAATAACCCTTGTTCCCTGGCTGCCATG-TTTTTAAA-CGGATCGAGTTGATTTTAGCTATTT----GGGTAGAGGGTCTCATACTGATGATCATTTgta
gi|5619 : tgtatcattaatggaagagaagaaattatttccctctgttgaaaataacacaTACAATA-CA--TATATAAAG---AAAATAACCCTTGTTCCTTGGCTATCATG-TTTTTAAA-CAGATCAAGTTGATTTTACCTATTT----GGGTGGAGGGTCTCATACTGATGATCATTTgta
gi|5623 : tgtatcattagtggaagagaagaaattgtttccctctattgaaaataacacaTATA-CA--TGTATA--GT--AAACTAACCCC-GCCCTCTGGCTGCCATT-TTTTTTGA-CAAATCAAGATGGCTTGAAAAAACT----TGGTAGAGGGTCTT---CCAACGAACATTTgta
gi|5688 : atagcttataGCT--TATATA--GT--AAACTAACCCC-ACCAACTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGACTTGAACAAACT----TGGTAGAGGGTCat
gi|5712 : ataat--TATATA--GT--AAACTAACCCT-ACCCCGTGGCCGCCATG-TTTTTTGA-CGAATCAGCATGACTTGAACAAACT----TGGTAGAGGGTCAC---CCGAGGAACATTT
gi|5705 : --TATATA--GT--AAACTAACCCT-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5708 : --TATATA--GT--AAACTAACCCC-ACCCCCTGGCTGCCATG-TTTTTTGA-CAAATCAAGATGGCTTGGACAAACT----TGGTAGAGGGTC
gi|5707 : --TATATA--GT--AAACTAACCCC-ATCCTCTGGCAACCATG-TTTTTTGA-CGAATCAAGATGGCTTGAGCAAACT----TTGTAGAGGGTCAC---TCAAGGACCATTT
gi|5701 : --TATAAA--GT--AAACTAACCCA-ACCCCATGGCCACCATG-TTTTTTGA-CGAATCAAGATGGGTTGAACAAACT----TGGTAGAGGGTCAT---CCAAGGATCATTT
gi|5695 : --TATATA--AT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAACCAAGATGACTTGAAAAAACT----TGGTAGAGGGTC
gi|5703 : --TATATA--GT--AAACTAACCCC-AGCCCCTGGCTGCCATG-ATTTTTGA-TGAATCAAGATGGGTTGAACAAACT----TGGTAGAGGGTC
gi|5709 : --TATATA--GA--AAACTAACCCC-GCCCCCTGGCCGCCATG-TTTTTAGA-CAAATCACTACGGTTTGAACAAACT----TGGTGAAGGGTCCT---CTAAGGAACATTT
gi|5617 : --TATAAA--G---AAAATAACCCTTGTTCCCAGGCTGCCATG-TTTTTAAA-CGGATCAAGTTGGTTTTAGCTATTT----GGGTAGAGGGTCTCATACTGATGATCATTT
gi|5720 : tgtatcattagtggaagagaagaaattgtttccctctgttgaaaataacacatacaatacacaATATA--GT--AAACTAACCCC-AACCCCTGGCCGCCATG-TTTTTTGA-CAAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTCAC---CCAAGGATCATTTgta
gi|5717 : ATATA--GT--AAACTAACCCA-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGTTGGCTTGAACAAACT----TGGTAGAGGGTCAC---CCAAGGATCATTT
gi|5718 : ATATA--GT--AAACTAACCCC-ACTCCCTGGCTGTCATG-TTTT-TGA-CGAACCAAGATAACTTGAACAAACT----TGGTAGAGGGTCAC---CCAAGGATCATTT
gi|5693 : ATATA--GT--AAACTAAACCC-ACCCCCTGGCTGCCATG-TATTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5724 : ataaATAAA--GT--AAACTAACCCC-ACCCCCTGGCGGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGG
gi|5721 : ATATA--GT--AAACAAACCCC-ACTCCCTGGCCGCCATG-TTTTTTGA-CCAATCAAGATGGGTTGAACAAACT----TGGTAGAGGGTC
gi|5692 : ATGTA--GT--AAACAAACCCC-ACTCCCTGGCCGCCATG-TTTTTTGA-CAAATCAAGATGGCTTGAACAAACT----TGGTAGATGGTC
gi|5719 : tatatacATATA--GT--AAACTAACCCC-TATCCCTGGCTGTTATG-TTTTTTGA-CAAATCAAGATGGCTTGAACAAACT----TGGTAGAGGCTCAC---TCAAGGATCATTT
gi|5722 : ATAAA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTT-GA-CAAATCAAGATGACTTGAACAAACT----TGGTGGAGGGTC
gi|5723 : ATATA--GT--AAACTAACCCC-ATTCCCTGGCCGCCATG-TTTT-TGA-CGAATCAGGATGGGTTGAACAAACT----TGGTAGAGGATC
gi|5690 : ATATA--GGGAAAAGTGACCAT-GTCCCCTGTTGGCCATG-TTTTTTAA-CAAATCAGAATAATTTTAACAATCT----TGGGAGATGGTC
gi|5729 : cactacatacA--AT--AAACTAACCCC-ACCCCCTGGTCGCCATG-TTTTTTTA-CGAACCAAGATGACTTGAACAAACT----TGGTAGAGGGTCAC---CTAAGGAACATTT
gi|5742 : --AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGACTCAAGATGGCTTGAACAAACT----TGGTAGAGGGTCAC---ACAAGGAACATTT
gi|5753 : --AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-TGAATCAAGATTGGTTGATCAAACT----TGGTAGAGGGTCAC---CCAAGGATCATTT
gi|5747 : --AAACTAGCCCT-GCCCCCTGGCTGCCATG-TTTTTTGA-CGAATCAGGATGGCTTGAACAAACT----TGGTAGAGAGTCAC---TCGAGGAACATTT
gi|5752 : --AAACTAACCCC-AACCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5750 : --AAACTAACCCC-ACCCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGAGTC
gi|5756 : --AAACTAACCC--ACCCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TATTAGAGAGTCTC---CCAAGGAACATTT
gi|5732 : --AAACTAACCCC-ACCCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGCTGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5751 : --AAACTAACCCC-ACTCCCTGGCCGCAATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5755 : --AAACTAACCCC-ACCCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGATAGAGAGTC
gi|5699 : --AAACTAACCCC-ACCCCCTGGTTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGAGTC
gi|5739 : acataa--AAACTAACCCC-TGCCCCTGGCCGCCATG-TTTTTTGA-CAAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5754 : --AAACTAACCCC-ACCCCTTGGCCGCCATG-TTTTTTGA-CGAATCAATCTGGCTTGAGCAAACT----TGGTAGAGGGTC
gi|5744 : --AAACTAACCC--ATCCCCCGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGGTTGAACAAATT----TGGTAGAGGGTCAC---ACA
gi|5735 : --AAAATAACCCC-ACTCCCTGGCCACCATG-TTTTTTGA-CGAATCAAGATGGCTTGAGCAAACT----TGGTAGAGAGTC
gi|5730 : --AAACTAACCCC-ATCCCCAGGCTGCCATG-TTTTTTAA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGAGTC
gi|5745 : aa--AAACTAACCC--ACCCCCTGCCTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGAGTC
gi|5734 : --AAACTAACCC--ACCCACTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGAGTC
gi|5731 : --AAACTAACCCC-ACCCCCTGGCTGCCATG-TTTTTTAAATGAATCAAGATGGCTTGAACAAACT----TGGGAGAGGGTC
gi|5757 : --AAACTAACCCC-ACCCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGGATTGAACAAACT----AGGTAGAGAATC
gi|5748 : --AAACTAACCCC-TACCCCTGGCTGCCATG-TTTTTTGA-TGAATCAAGATGGCTTGAACAAAAT----TGGTAGAGGGTC
gi|5698 : --AAACTAACCC--ACCCG-TGGCTGCCGTG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGAGTC
gi|5691 : acataaaaaa--AAAGTGACCAT-GTCCCCTGGTGGCCATG-TTTTTTGA-CAAATCAGAAT-ATTTTAACATTCT----TGGGAGAAGGTC
gi|5621 : caattacatacatacagggaACTAACCTC-ATCCCCTGGCTGCTATG-TTTTTAGA-AGAATCAAGATGGCTTGAACAAACT----TGGTAGAGAGTC
gi|5783 : gaagagtgtattacctcttcttataataactgctatatacagacattCCCC-GCCCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATTATTTGAACAAACT----TGGTAGAGGGTCAC---ACAAGGAACATTT
gi|5780 : CCCC-GCCCCCTGGCAGCCATG-TTTTTTGA-CGAATCAAGCTGGCTTTAACAAACT----TGGTAGAGGGTCAC---CCAAGGATCATTT
gi|5784 : CCCC-GCCCCCTGGCAGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAAC-AACT----TGGTAGAGGGTCAC---
gi|5786 : CCCT-GCTCCCTGGCAGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTCa
gi|5776 : CCCT-GTCCCCTGGCGGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5788 : CCTC-TTCCCCTAGCAGTCATG-TTTTTTGA-CGAATCAAGATGGCTTTAACAAACT----TGGTAGAGGGT-AC---TCAAGGATCATTT
gi|5781 : CCCCTGGCGGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5777 : ctttgtCCTCAGGTGGCCTTG-TTTTTCAA-CGGATCGAGTTAATTTT-ACTATCTATTATGGTAGAAAGTCAC---
gi|5801 : ctttgtCCTCTGGTGGTAATG-TTTTTGAA-CGGATCGAGTTAATTTTAGCTATTT----CGGTAGAatacttatcgtttgta
gi|5804 : tgtCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTTAACAAACT----TGGTAAAAGGTCAC---CCAAGGATCATTTaactgatcatttgta
gi|5809 : CCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5805 : CCCTGGCTGCCATG-TTTTTAAA-TGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5728 : CCCTGGCGACAATG-TTTTTAAT-CAGATCACGTTGAATTTAGCTATTT----TAGTAGGGGGTCA
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5620 ): CATTGGTGGCAGAGAAAAAGATATTTTCCCACTATAAAAATAGAGAGACCATGGTCATATAGGTACATGTATATAATGAAATTAGCTATGTCCCCTATAAATGGATCAAGCTCATTTTAGCTATTTTGGTAGAGTAGGTTGTCGCATACTGATCATTTGTA
Alignments
lowQualScore : 11 33 00 2 0 0 0000 999 1
lowQualScore : .. .. .. . . . .... ... .
lowQualScore : 11 55 66 2 8 4 9999 777 0
consensus : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTCAC---CCAAGGANCATTT
Reference ( family-179 ) : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTCAC---CCAAGGANCATTT
gi|5615 : TACAATA-CA--TATATAAAG---AAAATAACCCTTGTTCCCTGGCTGCCATG-TTTTTAAA-CGGATCAAGTTGATTTTAGCTATTT----GGGTAGAGGGTCTCATACTGATGATCATTT
gi|5616 : tgtatcattagtggaagagaagaaattgtttccctctgttgaaaataacacaTACAATA-CA--TATATAAAG---AAAATAACCCTTGTTCCCTGGCTGCCATG-TTTTTAAA-CGGATCGAGTTGATTTTAGCTATTT----GGGTAGAGGGTCTCATACTGATGATCATTTgta
gi|5617 : tgtatcattaatggaagagaagaaattatttccctctgttgaaaataacaca--TATAAA--G---AAAATAACCCTTGTTCCCAGGCTGCCATG-TTTTTAAA-CGGATCAAGTTGGTTTTAGCTATTT----GGGTAGAGGGTCTCATACTGATGATCATTTgta
gi|5618 : tgtatcattagtggaagagaagaaattgtttccctctgttgaaaataacacatacaatacacaTACAATA-CA--TATATAAAG---AAAATAACCCTTGTTCCCTGGCTGCCATG-TTTTTAAA-CGGATCAAGTTGATTTTAGCTATTT----GGGTAAAGGGTCTCGTACTGATGAACATTTgta
gi|5619 : tgtatcattagtggaagagaagaaattgtttccctctgttgaaaataacacaTACAATA-CA--TATATAAAG---AAAATAACCCTTGTTCCTTGGCTATCATG-TTTTTAAA-CAGATCAAGTTGATTTTACCTATTT----GGGTGGAGGGTCTCATACTGATGATCATTTgta
gi|5621 : tgtatcattagtggaagagaagaaattgtttccctctattgaaaataacacaACTAACCTC-ATCCCCTGGCTGCTATG-TTTTTAGA-AGAATCAAGATGGCTTGAACAAACT----TGGTAGAGAGTCgta
gi|5623 : gaagagtgtattacctcttcttataataactgctatatacagacattTATA-CA--TGTATA--GT--AAACTAACCCC-GCCCTCTGGCTGCCATT-TTTTTTGA-CAAATCAAGATGGCTTGAAAAAACT----TGGTAGAGGGTCTT---CCAACGAACATTT
gi|5624 : atagcttataTACTATAGCT--CATATA--GT--AAACTAACCAC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGGTTGAACAAACT----TGGTAGAGGGTCAC---CCAAGGATCATTTat
gi|5625 : cgTACAATAGCT--TTTACA--GT--AAACTAACCCC-AACCCCTGGCCGCCATG-TTTTTTAA-CGAATCAACATGGCTTAAACAAACT----TGGTAGAGGGTC
gi|5627 : aTACTATAGCT--TATATA--GT--AAACTAACCCC-ATCCCCTGGCCGCCATG-TTTTTTGA-TGAATCAAGATGACTTGAACAACCT----TGGTAGAGGGTC
gi|5628 : TACTATAGCT--TATATA--GT--AAACTAACCCC-GTCCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGAATGCTTGAACAAATT----TGGGAGAGGGTCAC---CCAAGGACCATTT
gi|5629 : TACTATAGCTTATATATA--GT---AACTAACCCC-ATCCCCTGGTCGCCATG--TTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5631 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ATTCCCTGGCCGCCATG-TTTTTTGA-CGAATCAATATGACTTGAACAAACT----TGGTAGAGGGTC
gi|5632 : TACTATAGCT--TATATA--GT--AAACTAACCCC-GCCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5633 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ATCCCCTGGCTGCCATG-ATTTTTGA-CGAGTCAAGATGGGTTGAACAAACT----TGGTAGAGGGTC
gi|5634 : TACTATAGCT--TATATA--GT--AAAGTATCCCC-AACCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTTAACAAACT----TGGTAAAAGGTCAC---CCGAGGATCATTT
gi|5635 : TACTATAGCT--TATATA--GT--AAACTAACCCC-AGCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAAGGTCAT---CCAAGGATCATTT
gi|5636 : TACTATAGCT--TATATA--GT--AAACTAACCCC-AACCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTCAC---CCAAGGACCATTT
gi|5637 : TACTATAGCT--TATATA--GT--AAACTAACCCC-AGCCCCTTGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5638 : TACTATAGCT--TATATA--GT--AAACTTACCCC-ACCCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGACTTGAACAAACT----TGGTAGAGGGTC
gi|5639 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCACCATG-TTTTCTGA-CGAATCAAGATGACTTGAACAAACT----TGGTAGAGGGTC
gi|5641 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCTGCCTTG-TTTTTTGA-CGAATCAAGATGACTTAAACAAACT----TGGTAGAGGGTC
gi|5642 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTCAC---CCAGTGAACATTT
gi|5643 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATAAAGATGGCTTTAACAAACT----TGGTAGAGGGTC
gi|5644 : TACTATAGCT--TATATA--GT--AAACTAATCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTAAACAAACT----TGGTAGAGGGTC
gi|5648 : TACTATAGCT--TATATA--GT--AAACTAACTCC-ACCCCCTGGCCCCCATG-TTTTTTAA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5650 : TACTATAGCT--TATATA--GT--AAACTAACCCT-ACCCCCTGGCCACCATG-TTTTTTGA-CGAATCAAGATAACTTGAACAAACT----TGGTGGAGGGTC
gi|5652 : TACTATAGCT--TATATA--GT--AAACTAACCCC-AGCCCCTGGCCACCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5657 : TACTATAGCT--TATATA--AT--AAACTAACCCC-TCTTCCTGGTTGCCATG-TTTTTTGA-CGAATAAAGATGGGTTGAACAAACT----TAGTAGAGGGTCAC---CTAAGGAACATTT
gi|5658 : TACTATAGCT--TATATA--GT--AAACTAACTTC-ACCCCCTGGCTGCCATG-TTTTTTGA-CAAATCAAGATGGGTTGAACAAACT----TGGTAGAGGGTC
gi|5659 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGAGTC
gi|5660 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCACCTGGCCGCCATG-TTTTTTGA-TGAATCAAGATGGCTTTAACAAACT----TGGTAGAGGGTC
gi|5663 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTAA-AGAATCAAGATGGCTTGAACAAACT----TGGTAGAAGGTC
gi|5665 : TACTATAGCT--TATATA--GT--AAATTAACCCC-AACCCCTGGCTGCCATGTTTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5667 : TACTATAGCT--TATATA--GT--AAACTAACTCC-ACCCCCTGGCCGCCATG--TTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5668 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTGTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5669 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATGTTTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5670 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACTAACC----TGCTAGAGGGTCAC---TTAAGGAACATTT
gi|5671 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGACTGCCATG-TTTTTTGA-CGAATCAATATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5672 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ATCCCCTGGCTACCATG-TTTTAAGA-CGAATCAAGATGGTTTGAACAAACT----TGGT
gi|5674 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTTA-CAAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTCtggtggatc
gi|5675 : TACTATAGCT--TATATA--GT--AAACTAACCCC-AACCCCTGGCCGCCATG-TTTTTTGA-CAAATCAAGATGCCTTGACCAAACT----TGGTAGAGGGTCAC---CCAAGGATCATTT
gi|5678 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCACCTGGCTGCCATG-TTATT-GA-CGAATCAAGATGGCTTGAACAAATT----TGATAGAGGGTCAC---CCAATGAACATTT
gi|5688 : GCT--TATATA--GT--AAACTAACCCC-ACCAACTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGACTTGAACAAACT----TGGTAGAGGGTC
gi|5690 : ataatATATA--GGGAAAAGTGACCAT-GTCCCCTGTTGGCCATG-TTTTTTAA-CAAATCAGAATAATTTTAACAATCT----TGGGAGATGGTC
gi|5691 : cactacatac--AAAGTGACCAT-GTCCCCTGGTGGCCATG-TTTTTTGA-CAAATCAGAAT-ATTTTAACATTCT----TGGGAGAAGGTC
gi|5692 : caattacatacatacagggaATGTA--GT--AAACAAACCCC-ACTCCCTGGCCGCCATG-TTTTTTGA-CAAATCAAGATGGCTTGAACAAACT----TGGTAGATGGTC
gi|5693 : tatatacATATA--GT--AAACTAAACCC-ACCCCCTGGCTGCCATG-TATTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5695 : ataa--TATATA--AT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAACCAAGATGACTTGAAAAAACT----TGGTAGAGGGTC
gi|5698 : --AAACTAACCC--ACCCG-TGGCTGCCGTG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGAGTC
gi|5699 : acataaaaaa--AAACTAACCCC-ACCCCCTGGTTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGAGTC
gi|5701 : acataa--TATAAA--GT--AAACTAACCCA-ACCCCATGGCCACCATG-TTTTTTGA-CGAATCAAGATGGGTTGAACAAACT----TGGTAGAGGGTCAT---CCAAGGATCATTT
gi|5703 : --TATATA--GT--AAACTAACCCC-AGCCCCTGGCTGCCATG-ATTTTTGA-TGAATCAAGATGGGTTGAACAAACT----TGGTAGAGGGTC
gi|5705 : --TATATA--GT--AAACTAACCCT-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5707 : --TATATA--GT--AAACTAACCCC-ATCCTCTGGCAACCATG-TTTTTTGA-CGAATCAAGATGGCTTGAGCAAACT----TTGTAGAGGGTCAC---TCAAGGACCATTT
gi|5708 : --TATATA--GT--AAACTAACCCC-ACCCCCTGGCTGCCATG-TTTTTTGA-CAAATCAAGATGGCTTGGACAAACT----TGGTAGAGGGTC
gi|5709 : --TATATA--GA--AAACTAACCCC-GCCCCCTGGCCGCCATG-TTTTTAGA-CAAATCACTACGGTTTGAACAAACT----TGGTGAAGGGTCCT---CTAAGGAACATTT
gi|5712 : --TATATA--GT--AAACTAACCCT-ACCCCGTGGCCGCCATG-TTTTTTGA-CGAATCAGCATGACTTGAACAAACT----TGGTAGAGGGTCAC---CCGAGGAACATTT
gi|5717 : ATATA--GT--AAACTAACCCA-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGTTGGCTTGAACAAACT----TGGTAGAGGGTCAC---CCAAGGATCATTT
gi|5718 : ATATA--GT--AAACTAACCCC-ACTCCCTGGCTGTCATG-TTTT-TGA-CGAACCAAGATAACTTGAACAAACT----TGGTAGAGGGTCAC---CCAAGGATCATTT
gi|5719 : ATATA--GT--AAACTAACCCC-TATCCCTGGCTGTTATG-TTTTTTGA-CAAATCAAGATGGCTTGAACAAACT----TGGTAGAGGCTCAC---TCAAGGATCATTT
gi|5720 : ATATA--GT--AAACTAACCCC-AACCCCTGGCCGCCATG-TTTTTTGA-CAAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTCAC---CCAAGGATCATTT
gi|5721 : ATATA--GT--AAACAAACCCC-ACTCCCTGGCCGCCATG-TTTTTTGA-CCAATCAAGATGGGTTGAACAAACT----TGGTAGAGGGTC
gi|5722 : ATAAA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTT-GA-CAAATCAAGATGACTTGAACAAACT----TGGTGGAGGGTC
gi|5723 : ATATA--GT--AAACTAACCCC-ATTCCCTGGCCGCCATG-TTTT-TGA-CGAATCAGGATGGGTTGAACAAACT----TGGTAGAGGATC
gi|5724 : ATAAA--GT--AAACTAACCCC-ACCCCCTGGCGGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGG
gi|5728 : CCCTGGCGACAATG-TTTTTAAT-CAGATCACGTTGAATTTAGCTATTT----TAGTAGGGGGTCA
gi|5729 : aaaaaaattaagctatgttA--AT--AAACTAACCCC-ACCCCCTGGTCGCCATG-TTTTTTTA-CGAACCAAGATGACTTGAACAAACT----TGGTAGAGGGTCAC---CTAAGGAACATTTgatactgattatttgta
gi|5730 : --AAACTAACCCC-ATCCCCAGGCTGCCATG-TTTTTTAA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGAGTC
gi|5731 : aa--AAACTAACCCC-ACCCCCTGGCTGCCATG-TTTTTTAAATGAATCAAGATGGCTTGAACAAACT----TGGGAGAGGGTC
gi|5732 : --AAACTAACCCC-ACCCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGCTGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5734 : --AAACTAACCC--ACCCACTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGAGTC
gi|5735 : --AAAATAACCCC-ACTCCCTGGCCACCATG-TTTTTTGA-CGAATCAAGATGGCTTGAGCAAACT----TGGTAGAGAGTC
gi|5739 : --AAACTAACCCC-TGCCCCTGGCCGCCATG-TTTTTTGA-CAAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5742 : --AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGACTCAAGATGGCTTGAACAAACT----TGGTAGAGGGTCAC---ACAAGGAACATTT
gi|5744 : --AAACTAACCC--ATCCCCCGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGGTTGAACAAATT----TGGTAGAGGGTCAC---ACA
gi|5745 : --AAACTAACCC--ACCCCCTGCCTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGAGTC
gi|5747 : --AAACTAGCCCT-GCCCCCTGGCTGCCATG-TTTTTTGA-CGAATCAGGATGGCTTGAACAAACT----TGGTAGAGAGTCAC---TCGAGGAACATTT
gi|5748 : --AAACTAACCCC-TACCCCTGGCTGCCATG-TTTTTTGA-TGAATCAAGATGGCTTGAACAAAAT----TGGTAGAGGGTC
gi|5750 : --AAACTAACCCC-ACCCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGAGTC
gi|5751 : --AAACTAACCCC-ACTCCCTGGCCGCAATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5752 : --AAACTAACCCC-AACCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5753 : --AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-TGAATCAAGATTGGTTGATCAAACT----TGGTAGAGGGTCAC---CCAAGGATCATTT
gi|5754 : --AAACTAACCCC-ACCCCTTGGCCGCCATG-TTTTTTGA-CGAATCAATCTGGCTTGAGCAAACT----TGGTAGAGGGTC
gi|5755 : --AAACTAACCCC-ACCCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGATAGAGAGTC
gi|5756 : --AAACTAACCC--ACCCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TATTAGAGAGTCTC---CCAAGGAACATTT
gi|5757 : --AAACTAACCCC-ACCCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGGATTGAACAAACT----AGGTAGAGAATC
gi|5776 : CCCT-GTCCCCTGGCGGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5777 : CCTCAGGTGGCCTTG-TTTTTCAA-CGGATCGAGTTAATTTT-ACTATCTATTATGGTAGAAAGTCAC---
gi|5780 : ctttgtCCCC-GCCCCCTGGCAGCCATG-TTTTTTGA-CGAATCAAGCTGGCTTTAACAAACT----TGGTAGAGGGTCAC---CCAAGGATCATTTatacttatcgtttgta
gi|5781 : CCCCTGGCGGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5783 : ctttgtCCCC-GCCCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATTATTTGAACAAACT----TGGTAGAGGGTCAC---ACAAGGAACATTT
gi|5784 : CCCC-GCCCCCTGGCAGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAAC-AACT----TGGTAGAGGGTCAC---
gi|5786 : CCCT-GCTCCCTGGCAGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTCa
gi|5788 : CCTC-TTCCCCTAGCAGTCATG-TTTTTTGA-CGAATCAAGATGGCTTTAACAAACT----TGGTAGAGGGT-AC---TCAAGGATCATTT
gi|5804 : CCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTTAACAAACT----TGGTAAAAGGTCAC---CCAAGGATCATTT
gi|5805 : CCCTGGCTGCCATG-TTTTTAAA-TGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5809 : CCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5620 ): CATTGGTGGCAGAGAAAAAGATATTTTCCCACTATAAAAATAGAGAGACCATGGTCATATAGGTACATGTATATAATGAAATTAGCTATGTCCCCTATAAATGGATCAAGCTCATTTTAGCTATTTTGGTAGAGTAGGTTGTCGCATACTGATCATTTGTA
Unaligned ( gi|5801 ): TGTCCTCTGGTGGTAATGTTTTTGAACGGATCGAGTTAATTTTAGCTATTTCGGTAGAAACTGATCATTTGTA
Alignments
lowQualScore : 11 33 00 2 0 0 0000 999 1
lowQualScore : .. .. .. . . . .... ... .
lowQualScore : 11 55 66 2 8 4 9999 777 0
consensus : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTCAC---CCAAGGANCATTT
Reference ( family-179 ) : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTCAC---CCAAGGANCATTT
gi|5615 : TACAATA-CA--TATATAAAG---AAAATAACCCTTGTTCCCTGGCTGCCATG-TTTTTAAA-CGGATCAAGTTGATTTTAGCTATTT----GGGTAGAGGGTCTCATACTGATGATCATTT
gi|5616 : tgtatcattagtggaagagaagaaattgtttccctctgttgaaaataacacaTACAATA-CA--TATATAAAG---AAAATAACCCTTGTTCCCTGGCTGCCATG-TTTTTAAA-CGGATCGAGTTGATTTTAGCTATTT----GGGTAGAGGGTCTCATACTGATGATCATTTgta
gi|5617 : tgtatcattaatggaagagaagaaattatttccctctgttgaaaataacaca--TATAAA--G---AAAATAACCCTTGTTCCCAGGCTGCCATG-TTTTTAAA-CGGATCAAGTTGGTTTTAGCTATTT----GGGTAGAGGGTCTCATACTGATGATCATTTgta
gi|5618 : tgtatcattagtggaagagaagaaattgtttccctctgttgaaaataacacatacaatacacaTACAATA-CA--TATATAAAG---AAAATAACCCTTGTTCCCTGGCTGCCATG-TTTTTAAA-CGGATCAAGTTGATTTTAGCTATTT----GGGTAAAGGGTCTCGTACTGATGAACATTTgta
gi|5619 : tgtatcattagtggaagagaagaaattgtttccctctgttgaaaataacacaTACAATA-CA--TATATAAAG---AAAATAACCCTTGTTCCTTGGCTATCATG-TTTTTAAA-CAGATCAAGTTGATTTTACCTATTT----GGGTGGAGGGTCTCATACTGATGATCATTTgta
gi|5621 : tgtatcattagtggaagagaagaaattgtttccctctattgaaaataacacaACTAACCTC-ATCCCCTGGCTGCTATG-TTTTTAGA-AGAATCAAGATGGCTTGAACAAACT----TGGTAGAGAGTCgta
gi|5623 : gaagagtgtattacctcttcttataataactgctatatacagacattTATA-CA--TGTATA--GT--AAACTAACCCC-GCCCTCTGGCTGCCATT-TTTTTTGA-CAAATCAAGATGGCTTGAAAAAACT----TGGTAGAGGGTCTT---CCAACGAACATTT
gi|5624 : atagcttataTACTATAGCT--CATATA--GT--AAACTAACCAC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGGTTGAACAAACT----TGGTAGAGGGTCAC---CCAAGGATCATTTat
gi|5625 : cgTACAATAGCT--TTTACA--GT--AAACTAACCCC-AACCCCTGGCCGCCATG-TTTTTTAA-CGAATCAACATGGCTTAAACAAACT----TGGTAGAGGGTC
gi|5627 : aTACTATAGCT--TATATA--GT--AAACTAACCCC-ATCCCCTGGCCGCCATG-TTTTTTGA-TGAATCAAGATGACTTGAACAACCT----TGGTAGAGGGTC
gi|5628 : TACTATAGCT--TATATA--GT--AAACTAACCCC-GTCCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGAATGCTTGAACAAATT----TGGGAGAGGGTCAC---CCAAGGACCATTT
gi|5629 : TACTATAGCTTATATATA--GT---AACTAACCCC-ATCCCCTGGTCGCCATG--TTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5631 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ATTCCCTGGCCGCCATG-TTTTTTGA-CGAATCAATATGACTTGAACAAACT----TGGTAGAGGGTC
gi|5632 : TACTATAGCT--TATATA--GT--AAACTAACCCC-GCCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5633 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ATCCCCTGGCTGCCATG-ATTTTTGA-CGAGTCAAGATGGGTTGAACAAACT----TGGTAGAGGGTC
gi|5634 : TACTATAGCT--TATATA--GT--AAAGTATCCCC-AACCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTTAACAAACT----TGGTAAAAGGTCAC---CCGAGGATCATTT
gi|5635 : TACTATAGCT--TATATA--GT--AAACTAACCCC-AGCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAAGGTCAT---CCAAGGATCATTT
gi|5636 : TACTATAGCT--TATATA--GT--AAACTAACCCC-AACCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTCAC---CCAAGGACCATTT
gi|5637 : TACTATAGCT--TATATA--GT--AAACTAACCCC-AGCCCCTTGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5638 : TACTATAGCT--TATATA--GT--AAACTTACCCC-ACCCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGACTTGAACAAACT----TGGTAGAGGGTC
gi|5639 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCACCATG-TTTTCTGA-CGAATCAAGATGACTTGAACAAACT----TGGTAGAGGGTC
gi|5641 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCTGCCTTG-TTTTTTGA-CGAATCAAGATGACTTAAACAAACT----TGGTAGAGGGTC
gi|5642 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTCAC---CCAGTGAACATTT
gi|5643 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATAAAGATGGCTTTAACAAACT----TGGTAGAGGGTC
gi|5644 : TACTATAGCT--TATATA--GT--AAACTAATCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTAAACAAACT----TGGTAGAGGGTC
gi|5648 : TACTATAGCT--TATATA--GT--AAACTAACTCC-ACCCCCTGGCCCCCATG-TTTTTTAA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5650 : TACTATAGCT--TATATA--GT--AAACTAACCCT-ACCCCCTGGCCACCATG-TTTTTTGA-CGAATCAAGATAACTTGAACAAACT----TGGTGGAGGGTC
gi|5652 : TACTATAGCT--TATATA--GT--AAACTAACCCC-AGCCCCTGGCCACCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5657 : TACTATAGCT--TATATA--AT--AAACTAACCCC-TCTTCCTGGTTGCCATG-TTTTTTGA-CGAATAAAGATGGGTTGAACAAACT----TAGTAGAGGGTCAC---CTAAGGAACATTT
gi|5658 : TACTATAGCT--TATATA--GT--AAACTAACTTC-ACCCCCTGGCTGCCATG-TTTTTTGA-CAAATCAAGATGGGTTGAACAAACT----TGGTAGAGGGTC
gi|5659 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGAGTC
gi|5660 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCACCTGGCCGCCATG-TTTTTTGA-TGAATCAAGATGGCTTTAACAAACT----TGGTAGAGGGTC
gi|5663 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTAA-AGAATCAAGATGGCTTGAACAAACT----TGGTAGAAGGTC
gi|5665 : TACTATAGCT--TATATA--GT--AAATTAACCCC-AACCCCTGGCTGCCATGTTTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5667 : TACTATAGCT--TATATA--GT--AAACTAACTCC-ACCCCCTGGCCGCCATG--TTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5668 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTGTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5669 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATGTTTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5670 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACTAACC----TGCTAGAGGGTCAC---TTAAGGAACATTT
gi|5671 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGACTGCCATG-TTTTTTGA-CGAATCAATATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5672 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ATCCCCTGGCTACCATG-TTTTAAGA-CGAATCAAGATGGTTTGAACAAACT----TGGT
gi|5674 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTTA-CAAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTCtggtggatc
gi|5675 : TACTATAGCT--TATATA--GT--AAACTAACCCC-AACCCCTGGCCGCCATG-TTTTTTGA-CAAATCAAGATGCCTTGACCAAACT----TGGTAGAGGGTCAC---CCAAGGATCATTT
gi|5678 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCACCTGGCTGCCATG-TTATT-GA-CGAATCAAGATGGCTTGAACAAATT----TGATAGAGGGTCAC---CCAATGAACATTT
gi|5688 : GCT--TATATA--GT--AAACTAACCCC-ACCAACTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGACTTGAACAAACT----TGGTAGAGGGTC
gi|5690 : ataatATATA--GGGAAAAGTGACCAT-GTCCCCTGTTGGCCATG-TTTTTTAA-CAAATCAGAATAATTTTAACAATCT----TGGGAGATGGTC
gi|5691 : cactacatac--AAAGTGACCAT-GTCCCCTGGTGGCCATG-TTTTTTGA-CAAATCAGAAT-ATTTTAACATTCT----TGGGAGAAGGTC
gi|5692 : caattacatacatacagggaATGTA--GT--AAACAAACCCC-ACTCCCTGGCCGCCATG-TTTTTTGA-CAAATCAAGATGGCTTGAACAAACT----TGGTAGATGGTC
gi|5693 : tatatacATATA--GT--AAACTAAACCC-ACCCCCTGGCTGCCATG-TATTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5695 : ataa--TATATA--AT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAACCAAGATGACTTGAAAAAACT----TGGTAGAGGGTC
gi|5698 : --AAACTAACCC--ACCCG-TGGCTGCCGTG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGAGTC
gi|5699 : acataaaaaa--AAACTAACCCC-ACCCCCTGGTTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGAGTC
gi|5701 : acataa--TATAAA--GT--AAACTAACCCA-ACCCCATGGCCACCATG-TTTTTTGA-CGAATCAAGATGGGTTGAACAAACT----TGGTAGAGGGTCAT---CCAAGGATCATTT
gi|5703 : --TATATA--GT--AAACTAACCCC-AGCCCCTGGCTGCCATG-ATTTTTGA-TGAATCAAGATGGGTTGAACAAACT----TGGTAGAGGGTC
gi|5705 : --TATATA--GT--AAACTAACCCT-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5707 : --TATATA--GT--AAACTAACCCC-ATCCTCTGGCAACCATG-TTTTTTGA-CGAATCAAGATGGCTTGAGCAAACT----TTGTAGAGGGTCAC---TCAAGGACCATTT
gi|5708 : --TATATA--GT--AAACTAACCCC-ACCCCCTGGCTGCCATG-TTTTTTGA-CAAATCAAGATGGCTTGGACAAACT----TGGTAGAGGGTC
gi|5709 : --TATATA--GA--AAACTAACCCC-GCCCCCTGGCCGCCATG-TTTTTAGA-CAAATCACTACGGTTTGAACAAACT----TGGTGAAGGGTCCT---CTAAGGAACATTT
gi|5712 : --TATATA--GT--AAACTAACCCT-ACCCCGTGGCCGCCATG-TTTTTTGA-CGAATCAGCATGACTTGAACAAACT----TGGTAGAGGGTCAC---CCGAGGAACATTT
gi|5717 : ATATA--GT--AAACTAACCCA-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGTTGGCTTGAACAAACT----TGGTAGAGGGTCAC---CCAAGGATCATTT
gi|5718 : ATATA--GT--AAACTAACCCC-ACTCCCTGGCTGTCATG-TTTT-TGA-CGAACCAAGATAACTTGAACAAACT----TGGTAGAGGGTCAC---CCAAGGATCATTT
gi|5719 : ATATA--GT--AAACTAACCCC-TATCCCTGGCTGTTATG-TTTTTTGA-CAAATCAAGATGGCTTGAACAAACT----TGGTAGAGGCTCAC---TCAAGGATCATTT
gi|5720 : ATATA--GT--AAACTAACCCC-AACCCCTGGCCGCCATG-TTTTTTGA-CAAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTCAC---CCAAGGATCATTT
gi|5721 : ATATA--GT--AAACAAACCCC-ACTCCCTGGCCGCCATG-TTTTTTGA-CCAATCAAGATGGGTTGAACAAACT----TGGTAGAGGGTC
gi|5722 : ATAAA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTT-GA-CAAATCAAGATGACTTGAACAAACT----TGGTGGAGGGTC
gi|5723 : ATATA--GT--AAACTAACCCC-ATTCCCTGGCCGCCATG-TTTT-TGA-CGAATCAGGATGGGTTGAACAAACT----TGGTAGAGGATC
gi|5724 : ATAAA--GT--AAACTAACCCC-ACCCCCTGGCGGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGG
gi|5728 : CCCTGGCGACAATG-TTTTTAAT-CAGATCACGTTGAATTTAGCTATTT----TAGTAGGGGGTCA
gi|5729 : aaaaaaattaagctatgttA--AT--AAACTAACCCC-ACCCCCTGGTCGCCATG-TTTTTTTA-CGAACCAAGATGACTTGAACAAACT----TGGTAGAGGGTCAC---CTAAGGAACATTTgatactgattatttgta
gi|5730 : --AAACTAACCCC-ATCCCCAGGCTGCCATG-TTTTTTAA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGAGTC
gi|5731 : aa--AAACTAACCCC-ACCCCCTGGCTGCCATG-TTTTTTAAATGAATCAAGATGGCTTGAACAAACT----TGGGAGAGGGTC
gi|5732 : --AAACTAACCCC-ACCCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGCTGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5734 : --AAACTAACCC--ACCCACTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGAGTC
gi|5735 : --AAAATAACCCC-ACTCCCTGGCCACCATG-TTTTTTGA-CGAATCAAGATGGCTTGAGCAAACT----TGGTAGAGAGTC
gi|5739 : --AAACTAACCCC-TGCCCCTGGCCGCCATG-TTTTTTGA-CAAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5742 : --AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGACTCAAGATGGCTTGAACAAACT----TGGTAGAGGGTCAC---ACAAGGAACATTT
gi|5744 : --AAACTAACCC--ATCCCCCGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGGTTGAACAAATT----TGGTAGAGGGTCAC---ACA
gi|5745 : --AAACTAACCC--ACCCCCTGCCTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGAGTC
gi|5747 : --AAACTAGCCCT-GCCCCCTGGCTGCCATG-TTTTTTGA-CGAATCAGGATGGCTTGAACAAACT----TGGTAGAGAGTCAC---TCGAGGAACATTT
gi|5748 : --AAACTAACCCC-TACCCCTGGCTGCCATG-TTTTTTGA-TGAATCAAGATGGCTTGAACAAAAT----TGGTAGAGGGTC
gi|5750 : --AAACTAACCCC-ACCCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGAGTC
gi|5751 : --AAACTAACCCC-ACTCCCTGGCCGCAATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5752 : --AAACTAACCCC-AACCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5753 : --AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-TGAATCAAGATTGGTTGATCAAACT----TGGTAGAGGGTCAC---CCAAGGATCATTT
gi|5754 : --AAACTAACCCC-ACCCCTTGGCCGCCATG-TTTTTTGA-CGAATCAATCTGGCTTGAGCAAACT----TGGTAGAGGGTC
gi|5755 : --AAACTAACCCC-ACCCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGATAGAGAGTC
gi|5756 : --AAACTAACCC--ACCCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TATTAGAGAGTCTC---CCAAGGAACATTT
gi|5757 : --AAACTAACCCC-ACCCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGGATTGAACAAACT----AGGTAGAGAATC
gi|5776 : CCCT-GTCCCCTGGCGGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5777 : CCTCAGGTGGCCTTG-TTTTTCAA-CGGATCGAGTTAATTTT-ACTATCTATTATGGTAGAAAGTCAC---
gi|5780 : ctttgtCCCC-GCCCCCTGGCAGCCATG-TTTTTTGA-CGAATCAAGCTGGCTTTAACAAACT----TGGTAGAGGGTCAC---CCAAGGATCATTTatacttatcgtttgta
gi|5781 : CCCCTGGCGGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5783 : ctttgtCCCC-GCCCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATTATTTGAACAAACT----TGGTAGAGGGTCAC---ACAAGGAACATTT
gi|5784 : CCCC-GCCCCCTGGCAGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAAC-AACT----TGGTAGAGGGTCAC---
gi|5786 : CCCT-GCTCCCTGGCAGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTCa
gi|5788 : CCTC-TTCCCCTAGCAGTCATG-TTTTTTGA-CGAATCAAGATGGCTTTAACAAACT----TGGTAGAGGGT-AC---TCAAGGATCATTT
gi|5804 : CCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTTAACAAACT----TGGTAAAAGGTCAC---CCAAGGATCATTT
gi|5805 : CCCTGGCTGCCATG-TTTTTAAA-TGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5809 : CCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
blockSeqs : TA AA T ATA T
blockSeqs : . AA T ATA T
blockSeqs : . AA T GTA A
blockSeqs : . . T ATA T
blockSeqs : . . . . A
blockSeqs : . . . . T
blockSeqs : . . . . C
blockSeqs : . . . . T
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blockSeqs : . . . . C
blockSeqs : . . . . A
blockSeqs : . . . . A
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blockSeqs : . . . . T
blockSeqs : . . . . A
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blockSeqs : . . . . C
blockSeqs : . . . . A
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blockSeqCons : ** ***
originalCons : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTCAC---CCAAGGANCATTT
finalCons : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTCAC---CCAAGGANCATTT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5620 ): CATTGGTGGCAGAGAAAAAGATATTTTCCCACTATAAAAATAGAGAGACCATGGTCATATAGGTACATGTATATAATGAAATTAGCTATGTCCCCTATAAATGGATCAAGCTCATTTTAGCTATTTTGGTAGAGTAGGTTGTCGCATACTGATCATTTGTA
Unaligned ( gi|5801 ): TGTCCTCTGGTGGTAATGTTTTTGAACGGATCGAGTTAATTTTAGCTATTTCGGTAGAAACTGATCATTTGTA
Alignments
lowQualScore : 11 33 00 2 0 0 0000 999 1
lowQualScore : .. .. .. . . . .... ... .
lowQualScore : 11 55 66 2 8 4 9999 777 0
consensus : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTCAC---CCAAGGANCATTT
Reference ( family-179 ) : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTCAC---CCAAGGANCATTT
gi|5615 : TACAATA-CA--TATATAAAG---AAAATAACCCTTGTTCCCTGGCTGCCATG-TTTTTAAA-CGGATCAAGTTGATTTTAGCTATTT----GGGTAGAGGGTCTCATACTGATGATCATTT
gi|5616 : tgtatcattagtggaagagaagaaattgtttccctctgttgaaaataacacaTACAATA-CA--TATATAAAG---AAAATAACCCTTGTTCCCTGGCTGCCATG-TTTTTAAA-CGGATCGAGTTGATTTTAGCTATTT----GGGTAGAGGGTCTCATACTGATGATCATTTgta
gi|5617 : tgtatcattaatggaagagaagaaattatttccctctgttgaaaataacaca--TATAAA--G---AAAATAACCCTTGTTCCCAGGCTGCCATG-TTTTTAAA-CGGATCAAGTTGGTTTTAGCTATTT----GGGTAGAGGGTCTCATACTGATGATCATTTgta
gi|5618 : tgtatcattagtggaagagaagaaattgtttccctctgttgaaaataacacatacaatacacaTACAATA-CA--TATATAAAG---AAAATAACCCTTGTTCCCTGGCTGCCATG-TTTTTAAA-CGGATCAAGTTGATTTTAGCTATTT----GGGTAAAGGGTCTCGTACTGATGAACATTTgta
gi|5619 : tgtatcattagtggaagagaagaaattgtttccctctgttgaaaataacacaTACAATA-CA--TATATAAAG---AAAATAACCCTTGTTCCTTGGCTATCATG-TTTTTAAA-CAGATCAAGTTGATTTTACCTATTT----GGGTGGAGGGTCTCATACTGATGATCATTTgta
gi|5621 : tgtatcattagtggaagagaagaaattgtttccctctattgaaaataacacaACTAACCTC-ATCCCCTGGCTGCTATG-TTTTTAGA-AGAATCAAGATGGCTTGAACAAACT----TGGTAGAGAGTCgta
gi|5623 : gaagagtgtattacctcttcttataataactgctatatacagacattTATA-CA--TGTATA--GT--AAACTAACCCC-GCCCTCTGGCTGCCATT-TTTTTTGA-CAAATCAAGATGGCTTGAAAAAACT----TGGTAGAGGGTCTT---CCAACGAACATTT
gi|5624 : atagcttataTACTATAGCT--CATATA--GT--AAACTAACCAC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGGTTGAACAAACT----TGGTAGAGGGTCAC---CCAAGGATCATTTat
gi|5625 : cgTACAATAGCT--TTTACA--GT--AAACTAACCCC-AACCCCTGGCCGCCATG-TTTTTTAA-CGAATCAACATGGCTTAAACAAACT----TGGTAGAGGGTC
gi|5627 : aTACTATAGCT--TATATA--GT--AAACTAACCCC-ATCCCCTGGCCGCCATG-TTTTTTGA-TGAATCAAGATGACTTGAACAACCT----TGGTAGAGGGTC
gi|5628 : TACTATAGCT--TATATA--GT--AAACTAACCCC-GTCCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGAATGCTTGAACAAATT----TGGGAGAGGGTCAC---CCAAGGACCATTT
gi|5629 : TACTATAGCTTATATATA--GT---AACTAACCCC-ATCCCCTGGTCGCCATG--TTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5631 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ATTCCCTGGCCGCCATG-TTTTTTGA-CGAATCAATATGACTTGAACAAACT----TGGTAGAGGGTC
gi|5632 : TACTATAGCT--TATATA--GT--AAACTAACCCC-GCCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5633 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ATCCCCTGGCTGCCATG-ATTTTTGA-CGAGTCAAGATGGGTTGAACAAACT----TGGTAGAGGGTC
gi|5634 : TACTATAGCT--TATATA--GT--AAAGTATCCCC-AACCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTTAACAAACT----TGGTAAAAGGTCAC---CCGAGGATCATTT
gi|5635 : TACTATAGCT--TATATA--GT--AAACTAACCCC-AGCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAAGGTCAT---CCAAGGATCATTT
gi|5636 : TACTATAGCT--TATATA--GT--AAACTAACCCC-AACCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTCAC---CCAAGGACCATTT
gi|5637 : TACTATAGCT--TATATA--GT--AAACTAACCCC-AGCCCCTTGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5638 : TACTATAGCT--TATATA--GT--AAACTTACCCC-ACCCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGACTTGAACAAACT----TGGTAGAGGGTC
gi|5639 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCACCATG-TTTTCTGA-CGAATCAAGATGACTTGAACAAACT----TGGTAGAGGGTC
gi|5641 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCTGCCTTG-TTTTTTGA-CGAATCAAGATGACTTAAACAAACT----TGGTAGAGGGTC
gi|5642 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTCAC---CCAGTGAACATTT
gi|5643 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATAAAGATGGCTTTAACAAACT----TGGTAGAGGGTC
gi|5644 : TACTATAGCT--TATATA--GT--AAACTAATCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTAAACAAACT----TGGTAGAGGGTC
gi|5648 : TACTATAGCT--TATATA--GT--AAACTAACTCC-ACCCCCTGGCCCCCATG-TTTTTTAA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5650 : TACTATAGCT--TATATA--GT--AAACTAACCCT-ACCCCCTGGCCACCATG-TTTTTTGA-CGAATCAAGATAACTTGAACAAACT----TGGTGGAGGGTC
gi|5652 : TACTATAGCT--TATATA--GT--AAACTAACCCC-AGCCCCTGGCCACCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5657 : TACTATAGCT--TATATA--AT--AAACTAACCCC-TCTTCCTGGTTGCCATG-TTTTTTGA-CGAATAAAGATGGGTTGAACAAACT----TAGTAGAGGGTCAC---CTAAGGAACATTT
gi|5658 : TACTATAGCT--TATATA--GT--AAACTAACTTC-ACCCCCTGGCTGCCATG-TTTTTTGA-CAAATCAAGATGGGTTGAACAAACT----TGGTAGAGGGTC
gi|5659 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGAGTC
gi|5660 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCACCTGGCCGCCATG-TTTTTTGA-TGAATCAAGATGGCTTTAACAAACT----TGGTAGAGGGTC
gi|5663 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTAA-AGAATCAAGATGGCTTGAACAAACT----TGGTAGAAGGTC
gi|5665 : TACTATAGCT--TATATA--GT--AAATTAACCCC-AACCCCTGGCTGCCATGTTTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5667 : TACTATAGCT--TATATA--GT--AAACTAACTCC-ACCCCCTGGCCGCCATG--TTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5668 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTGTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5669 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATGTTTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5670 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACTAACC----TGCTAGAGGGTCAC---TTAAGGAACATTT
gi|5671 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGACTGCCATG-TTTTTTGA-CGAATCAATATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5672 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ATCCCCTGGCTACCATG-TTTTAAGA-CGAATCAAGATGGTTTGAACAAACT----TGGT
gi|5674 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTTA-CAAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTCtggtggatc
gi|5675 : TACTATAGCT--TATATA--GT--AAACTAACCCC-AACCCCTGGCCGCCATG-TTTTTTGA-CAAATCAAGATGCCTTGACCAAACT----TGGTAGAGGGTCAC---CCAAGGATCATTT
gi|5678 : TACTATAGCT--TATATA--GT--AAACTAACCCC-ACCACCTGGCTGCCATG-TTATT-GA-CGAATCAAGATGGCTTGAACAAATT----TGATAGAGGGTCAC---CCAATGAACATTT
gi|5688 : GCT--TATATA--GT--AAACTAACCCC-ACCAACTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGACTTGAACAAACT----TGGTAGAGGGTC
gi|5690 : ataatATATA--GGGAAAAGTGACCAT-GTCCCCTGTTGGCCATG-TTTTTTAA-CAAATCAGAATAATTTTAACAATCT----TGGGAGATGGTC
gi|5691 : cactacatac--AAAGTGACCAT-GTCCCCTGGTGGCCATG-TTTTTTGA-CAAATCAGAAT-ATTTTAACATTCT----TGGGAGAAGGTC
gi|5692 : caattacatacatacagggaATGTA--GT--AAACAAACCCC-ACTCCCTGGCCGCCATG-TTTTTTGA-CAAATCAAGATGGCTTGAACAAACT----TGGTAGATGGTC
gi|5693 : tatatacATATA--GT--AAACTAAACCC-ACCCCCTGGCTGCCATG-TATTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5695 : ataa--TATATA--AT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAACCAAGATGACTTGAAAAAACT----TGGTAGAGGGTC
gi|5698 : --AAACTAACCC--ACCCG-TGGCTGCCGTG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGAGTC
gi|5699 : acataaaaaa--AAACTAACCCC-ACCCCCTGGTTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGAGTC
gi|5701 : acataa--TATAAA--GT--AAACTAACCCA-ACCCCATGGCCACCATG-TTTTTTGA-CGAATCAAGATGGGTTGAACAAACT----TGGTAGAGGGTCAT---CCAAGGATCATTT
gi|5703 : --TATATA--GT--AAACTAACCCC-AGCCCCTGGCTGCCATG-ATTTTTGA-TGAATCAAGATGGGTTGAACAAACT----TGGTAGAGGGTC
gi|5705 : --TATATA--GT--AAACTAACCCT-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5707 : --TATATA--GT--AAACTAACCCC-ATCCTCTGGCAACCATG-TTTTTTGA-CGAATCAAGATGGCTTGAGCAAACT----TTGTAGAGGGTCAC---TCAAGGACCATTT
gi|5708 : --TATATA--GT--AAACTAACCCC-ACCCCCTGGCTGCCATG-TTTTTTGA-CAAATCAAGATGGCTTGGACAAACT----TGGTAGAGGGTC
gi|5709 : --TATATA--GA--AAACTAACCCC-GCCCCCTGGCCGCCATG-TTTTTAGA-CAAATCACTACGGTTTGAACAAACT----TGGTGAAGGGTCCT---CTAAGGAACATTT
gi|5712 : --TATATA--GT--AAACTAACCCT-ACCCCGTGGCCGCCATG-TTTTTTGA-CGAATCAGCATGACTTGAACAAACT----TGGTAGAGGGTCAC---CCGAGGAACATTT
gi|5717 : ATATA--GT--AAACTAACCCA-ACCCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGTTGGCTTGAACAAACT----TGGTAGAGGGTCAC---CCAAGGATCATTT
gi|5718 : ATATA--GT--AAACTAACCCC-ACTCCCTGGCTGTCATG-TTTT-TGA-CGAACCAAGATAACTTGAACAAACT----TGGTAGAGGGTCAC---CCAAGGATCATTT
gi|5719 : ATATA--GT--AAACTAACCCC-TATCCCTGGCTGTTATG-TTTTTTGA-CAAATCAAGATGGCTTGAACAAACT----TGGTAGAGGCTCAC---TCAAGGATCATTT
gi|5720 : ATATA--GT--AAACTAACCCC-AACCCCTGGCCGCCATG-TTTTTTGA-CAAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTCAC---CCAAGGATCATTT
gi|5721 : ATATA--GT--AAACAAACCCC-ACTCCCTGGCCGCCATG-TTTTTTGA-CCAATCAAGATGGGTTGAACAAACT----TGGTAGAGGGTC
gi|5722 : ATAAA--GT--AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTT-GA-CAAATCAAGATGACTTGAACAAACT----TGGTGGAGGGTC
gi|5723 : ATATA--GT--AAACTAACCCC-ATTCCCTGGCCGCCATG-TTTT-TGA-CGAATCAGGATGGGTTGAACAAACT----TGGTAGAGGATC
gi|5724 : ATAAA--GT--AAACTAACCCC-ACCCCCTGGCGGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGG
gi|5728 : CCCTGGCGACAATG-TTTTTAAT-CAGATCACGTTGAATTTAGCTATTT----TAGTAGGGGGTCA
gi|5729 : aaaaaaattaagctatgttA--AT--AAACTAACCCC-ACCCCCTGGTCGCCATG-TTTTTTTA-CGAACCAAGATGACTTGAACAAACT----TGGTAGAGGGTCAC---CTAAGGAACATTTgatactgattatttgta
gi|5730 : --AAACTAACCCC-ATCCCCAGGCTGCCATG-TTTTTTAA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGAGTC
gi|5731 : aa--AAACTAACCCC-ACCCCCTGGCTGCCATG-TTTTTTAAATGAATCAAGATGGCTTGAACAAACT----TGGGAGAGGGTC
gi|5732 : --AAACTAACCCC-ACCCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGCTGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5734 : --AAACTAACCC--ACCCACTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGAGTC
gi|5735 : --AAAATAACCCC-ACTCCCTGGCCACCATG-TTTTTTGA-CGAATCAAGATGGCTTGAGCAAACT----TGGTAGAGAGTC
gi|5739 : --AAACTAACCCC-TGCCCCTGGCCGCCATG-TTTTTTGA-CAAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5742 : --AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-CGACTCAAGATGGCTTGAACAAACT----TGGTAGAGGGTCAC---ACAAGGAACATTT
gi|5744 : --AAACTAACCC--ATCCCCCGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGGTTGAACAAATT----TGGTAGAGGGTCAC---ACA
gi|5745 : --AAACTAACCC--ACCCCCTGCCTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGAGTC
gi|5747 : --AAACTAGCCCT-GCCCCCTGGCTGCCATG-TTTTTTGA-CGAATCAGGATGGCTTGAACAAACT----TGGTAGAGAGTCAC---TCGAGGAACATTT
gi|5748 : --AAACTAACCCC-TACCCCTGGCTGCCATG-TTTTTTGA-TGAATCAAGATGGCTTGAACAAAAT----TGGTAGAGGGTC
gi|5750 : --AAACTAACCCC-ACCCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGAGTC
gi|5751 : --AAACTAACCCC-ACTCCCTGGCCGCAATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5752 : --AAACTAACCCC-AACCCCTGGCCGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5753 : --AAACTAACCCC-ACCCCCTGGCCGCCATG-TTTTTTGA-TGAATCAAGATTGGTTGATCAAACT----TGGTAGAGGGTCAC---CCAAGGATCATTT
gi|5754 : --AAACTAACCCC-ACCCCTTGGCCGCCATG-TTTTTTGA-CGAATCAATCTGGCTTGAGCAAACT----TGGTAGAGGGTC
gi|5755 : --AAACTAACCCC-ACCCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGATAGAGAGTC
gi|5756 : --AAACTAACCC--ACCCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TATTAGAGAGTCTC---CCAAGGAACATTT
gi|5757 : --AAACTAACCCC-ACCCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGGATTGAACAAACT----AGGTAGAGAATC
gi|5776 : CCCT-GTCCCCTGGCGGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5777 : CCTCAGGTGGCCTTG-TTTTTCAA-CGGATCGAGTTAATTTT-ACTATCTATTATGGTAGAAAGTCAC---
gi|5780 : ctttgtCCCC-GCCCCCTGGCAGCCATG-TTTTTTGA-CGAATCAAGCTGGCTTTAACAAACT----TGGTAGAGGGTCAC---CCAAGGATCATTTatacttatcgtttgta
gi|5781 : CCCCTGGCGGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5783 : ctttgtCCCC-GCCCCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATTATTTGAACAAACT----TGGTAGAGGGTCAC---ACAAGGAACATTT
gi|5784 : CCCC-GCCCCCTGGCAGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAAC-AACT----TGGTAGAGGGTCAC---
gi|5786 : CCCT-GCTCCCTGGCAGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTCa
gi|5788 : CCTC-TTCCCCTAGCAGTCATG-TTTTTTGA-CGAATCAAGATGGCTTTAACAAACT----TGGTAGAGGGT-AC---TCAAGGATCATTT
gi|5804 : CCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTTAACAAACT----TGGTAAAAGGTCAC---CCAAGGATCATTT
gi|5805 : CCCTGGCTGCCATG-TTTTTAAA-TGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
gi|5809 : CCCTGGCTGCCATG-TTTTTTGA-CGAATCAAGATGGCTTGAACAAACT----TGGTAGAGGGTC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5620 ): CATTGGTGGCAGAGAAAAAGATATTTTCCCACTATAAAAATAGAGAGACCATGGTCATATAGGTACATGTATATAATGAAATTAGCTATGTCCCCTATAAATGGATCAAGCTCATTTTAGCTATTTTGGTAGAGTAGGTTGTCGCATACTGATCATTTGTA
Unaligned ( gi|5801 ): TGTCCTCTGGTGGTAATGTTTTTGAACGGATCGAGTTAATTTTAGCTATTTCGGTAGAAACTGATCATTTGTA