lowQualScore : 0 1111 0 0 3 6 6 1 0 0 5 3 77
lowQualScore : . .... . . . . . . . . . . ..
lowQualScore : 5 0000 5 5 7 0 1 0 5 5 6 9 11
consensus : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAT-TTTNGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
Reference ( gi|113630 ) : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAT-TTTAGCAATTCCCAATTTTCACCC-TTT-T-GGGGCCCCTTCTGACCCCTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
gi|113607 : TTTATGCCAAATATGAACAAATCT-AACATACCGG----TTCTTAAGAAAAC-GAT-TTTAGTAATTCCCAATTTTTACCA-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
gi|113613 : TTTATACCAAATATGAACAAATCT-AACATACCGG----TTCTTAAGAAAAC-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCCCGTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
gi|113631 : TTTATGCCAAATATGAACAAATCT-GACATAACGG----TTCTTAAGAAAAG-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCTTCCTGACCCCTTAAGACAGTGGAACCCAGTCATTTTTTACAAATCTG--AACC
gi|113599 : TTTATATCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-AAA-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCGCTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
gi|113660 : TTTATGCAAAATATGAACAAATCT-GAAATACCGG----TTCTTAAGAAAAC-GAA-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCCAGTAA-TTTTTACAAATCTG--AACC
gi|113616 : TTTATGCAAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAA-TTTTGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCAAGTCA-TTTTTACAAATCTG--AACC
gi|113590 : TTTATGCCAAATATGAACAAATCT-GACATACCAG----TTCTTAAGAAAAT-GAT-TTTAGTAATTCCCAATTTGTACCC-TTT-T-GGGGCCCTTCCTGACCCCTTAAGACAGTGGAACTTAGTCA-TTTTTACAAATCTG--AACC
gi|113623 : tatTTTATGCCAAATATGAACAAATCT-GACCTACCGG----TTCTTAAGAAAAC-GAT-TTTAGCAATTCCCAATTTTTACCC-CTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGATCCCAGTCA--TTTTACTAATCTG--AACC
gi|113657 : TTTATGCAAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAA-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCCAGTAA-TTTTTACAAATCTG--
gi|113624 : TTTATGCCAAATATGAACAAGTCT-GACATACCGG----TTCTTAAGAAAAC-GAT-TTTAGTAATTACCAGTTTTTACCC-TTT-T-GATGCCCCTCCTGACCCCTTAAGACAATGGAACCCAGTCA-TTTTTACAAATCTG--AACC
gi|113677 : TTTATGCAAAATATGAACAAATCT-GACATACCAG----TTCTTAAGAAAAC-GAA-TTTAGTAATTCCCAATTTTTACCC-TTT-T--GGGCCCCTCCTGACCCTTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
gi|113676 : TTTATGCAAAATATGAACAAATCT-GACATACCAG----TTCTTAAGAAAAC-GAA-TTTAGTAATTCCCAATTTTTACCC-TTT-T--GGGCCCCTCCTGACCCTTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
gi|113601 : TTTACGCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAT-GAT-TTTTGTAATTCCCAATTTTTACCA-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCCAGTTT-TTTTTACAAATCTG--AACC
gi|113640 : TTTATGCAAAATATGAACAAATCT-GACATACCGG----TTGTTAAGAAAAC-ACA-TTTAGTAATTCCCAATTTTTACCT-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
gi|113626 : TTTATGCCAAATATGAACAAATCT-GGCATACCGG----TTCCTAAGAAAAC-GAT-TTTTGTAATTCCCAATTTTTACCC-TTT-T-TGGGCCCCTCCTAACCCTTTAAGACAGTGGAACCAAGTCA-TTTTTATAAATCTG--AACC
gi|113610 : TTTACACCAAATATGAAAATATCT-GACATACTGG----TTCTTAAGAAAAC-GAT-TTTTGTAATTCCCAATTTTTACCT-TTT-T-GGGGCCCCTCCTGACCCTTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
gi|113647 : TTTATGCCAAATATGAACAAATCT-GACATACTGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCTGAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCCATTGA-TTTTATCAAATCTG--AACC
gi|113669 : TTTATGCAAAATATGAACAAATCT-GAAATACCGG----TTGTTAAGAAAAC-GAA-TTTTGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGGCCCCTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--
gi|113592 : TTTATGCCAAATATGAACAAATCT-GACTTACCCA----TTCTTAAGAAAAC-AAT-TTTTGGAATTCTCAATTTTTACCA-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCCAGTCA-TTTTTAGAAATCTG--AACC
gi|113633 : ataTTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-CAA-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTTCTGACACCTTAAGACAGTGG-----AGTCA-TTTTTACAAATCTG--
gi|113612 : TTTATGCCAAATATGAACAAATCT-GACATACCAG----TTCTTAAATAAAC-AGT-TTTTGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCCCTTA----AGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
gi|113606 : TTTATGCCAAATATGAACAAATCT-GACATACGGA----TTCTTAAGAAAGC-GAT-TTTTGTAATTCCTAATTTTTACCC-TTT-T-GGGG-CCCTCCTGACCCCTTAAGACGAC-GAATCCAGTCA-TTTTTACAAATCTG--AACC
gi|113686 : TTTATGCCAGTTATGAACTAATCT-GACATACCAG----TTCTTAAGAAAAT-ATT-TTTTGTAATTCCCAATTTTTACCC-TTT-T-GGTGCCCCTCCTGACCCCTTAAGACAATGGAACCCAGTCATTTTTTTCAAATCTG--AACC
gi|113673 : TTTATGCCAAATACGAACACATCT-GACAAACCGG----TTCTTAAGAAAAC-GAT-TTT-GTAATTTCCCATTGTTACCA-TTT-T-GGGGCCCCTCCTGACCCATTAAGACAGTGGATCCCAGTCA-TTTTTACAAATCTG--
gi|113617 : TTTATGCCAAACACGAACAAATTT-GACATACCAG----TTCTTCAGAAAAC-ATT-TTTAGTAATTCTCAATTTTTGCCC-TTT-T-GGGGCCCCTCCTGAACCCTTAAGACAGTGGAAACTAGTCA--TTTTACAAAACTG--AACC
gi|113588 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113608 : tatTTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113589 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAT-GAT-TTTAGTAATTCCCAATTTTAACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113609 : tatTTTATGCCAAATATGAACAAATCT-GACATAACGG----TTCTTAAGAAAAC-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113646 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAT-TTTAGTAATTCTGAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACC
gi|113642 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCCCCATTTTTACCC-TTT-T-GGGGCCCCTCCTGACa
gi|113789 : TTAATGCCAAATATGAACAAATCT-GACATACCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113629 : TTTATGCTAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTACTG
gi|113653 : TTTATGCCAAATATGAACAAATCT-GATATACCGG----TTCTCAAGAAAGC-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113656 : TTTATACCAAATATGAACAAATCT-GACATACCGG----TTCTCAAGAAAAT-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113658 : TTTATGCAAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAA-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113650 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCTGAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113663 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATCCTCAATTTTTACCC-TTT-T-GGGACCCCTCCTGAC
gi|113639 : TTTATACCAAATATGAACAATTCT-AACATACCGG----TTCTTAAGAAAAC-AAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGA----TTAGAACAGT
gi|113665 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCCCCATTTTTACCC-TTT-T-TGGGCCCCTCCTGACttgtctccaggacctgcaacaatgccaata
gi|113666 : TTTATGCAAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAA-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGAGCCCCTCCTGAC
gi|113636 : TTTATGCCAAATATGAACAAATCT-GACATACTGG----TTCTTAAGAAAAT-GAT-TTTCATAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113678 : TTTATGCTAAATATGAACAAATCTTGACATACTGG----TTCTTAAGAAAAC-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCTCTCCTGAC
gi|113619 : TTTATGCAAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-AA--TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113681 : TTTATGCAAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAA-TTTAGTAATTCCCAATTTGTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113680 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAT-TTTAGTAATTCCCAAATTTTACCC--TT-T-GGAGCCCCTCCTGAC
gi|113615 : TTTATGCCAAATATAAACAAATCT-GAAATACCGG----TTCTTAAGAAAAC-GAT-TTTTGTAATTCCCAATTTTTACCC-TTT-T-AGGGCCCCTCCTGAC
gi|113603 : TTTATGCCAAATATGAACAAATCT-GACATACCAG----TTCTTAAGAAAAC-GAT-TTTTGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCT
gi|113628 : TTTATGCCAAAAATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAT-TTTTGTAA-TCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACc
gi|113645 : TTTATGCAAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAA-TTTAGTAATTCCGAATTTTTACCC-TTT-T-GAGGCCCCTCCTGAC
gi|113668 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAT-TTTAGTTATTCACAATTTTTACCC-TTT-T-GGGGCCCCT
gi|113672 : TTTATGCCAAATATGAACAAATCT-GACATACCAG----TTCTTAAGAAAAC-AAA-TTTAGTAATTCCCAATTTTTACCCTTTT-T-GGAGCCCCTCCTGACc
gi|113654 : TTTATGCCAAATATAAACAAATCT-GACATACCGG----TTCTTAAAAAAAA-GAT-TTTTGTAATTCCCAATTTTTACCC-TTT-T-GGGGCTCCTCCTGAC
gi|113664 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTCAAG-AAAC-GAT-TTTAGTAATTCTCAATTTTTACCC-TTT-T--GGGCCCCTCCTGAC
gi|113687 : TTTATGGCAAATATGAACAAATCT-GACATACCGT----TTTTTAAGAAAAC-GAT-TATGGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113600 : TTTA-GCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAT-GAT-TTTTGTAATTCCCAATTTTTACCC-TTT-T-GAGGTCCCTCCTGAC
gi|113787 : tTTAATGCCAAATATGAACAAATCT-GACATACCAG----TTCTTTAGAAAAC-GAT-TTTTGTAATTCCCAATTTTTACCT-TTT-T-GGGGCCCCTCCTGAC
gi|113611 : TTTATGCCAAATATGAACAAATCT-GACATACCAG----CTCCTAAGAAAAC-GAT-TTTTGTAATTCCAAATTTTTACCC-TTT-T-GAGGCCCCTCCTGAC
gi|113644 : TTTATGCCAAATATGAACAAATAT-GACCTACCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCCAAATTTTTACCC-TTT-T-GGGGCCACTCCTGAC
gi|113602 : TTTATGCCAAATATGAACAAATCT-GACATGCCG-----TTCTTAAGAAAAC-AGT-TTT-GTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113662 : TTTATGCCAAATATGAACAAATCT-GACATACCAG----TTCTTAAGAAAAT-GAT-TTTTGTAACTCCAAATTTTTACCC-TTT-TGGGGGCCCCTCCTGAC
gi|113627 : TTTATGCCGAACATGAACAAATTT-GACTTACCGG----TTCTTAAGAAAAA-GAT-TTTTGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113632 : TTTATGCCAAATATGAACAAATCT-GACATAACGG----TTCTTAAGAAAAG-GAT-TTTTGTAATTCCGAATTTTTACCC-TTT-T-GGGG-CCCTCCTGAC
gi|113679 : TTTATGCAAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC--ATATTTAGTAATTCCCCATTTTTACCC-TTT-T-GGGGCCACTCCTGAC
gi|113674 : TTTATGCCAAATATGAACAAATCT-GACATACCTG----TTCTTAAGAAAAC-AGT-TTTTGCAATTCCCAATTTTTACCC-TTT-T-GGCGCCCCCT
gi|113649 : TTTATGCCATATATGAACAAATCT-GACA--CCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCTGAATTTTTACCC-TTT-T-GGGGGCCCTCCTGAC
gi|113587 : TTTTTGCCAAATATGAACAAATCT-GACATACCAG----TTCTTAAGAAAAC-AGT-TTTTGTAATTCGCAATTTTTACCC-TTT-T-GTGGCCCCTCCAGAC
gi|113659 : atacTTTATGCCAAATATGAACACATCT-GCCTTACCGG----TTCTTAAGAAAAC-ATT-TTT--TAATTCCTAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113685 : TTTATGCCAAATATGAACAAATCT-GACTTACCGGCCGGTTCTTAAGAAAAC-AAT-TTTTGTAATTCCTAATTTTTACCCATTT-T-GGGG-CCTTTCTG
gi|113661 : TTTATGCCAAATATGAACAAATTT-GACTGACTGA----TTCTTAAGAGAAA-TAT-TTTTGAAATTCCCAGTTTTTACCC-TTT-T-TGGGCCCCTCCTGAC
gi|113689 : TTTATGCCAAATATGAACAAATTT-GACTGACTAT----TTCTTTAGAGAAA-GAT-TTTTGAAATTCCCAATTTTTATCC-TTT-T-GGGGCCCCTCCTGAC
gi|113651 : TTTATGCCAAATATGAACAAATTT-GACAGACCGG----TTCTTCGGAAAAC-AAT-TTTTGTAATT-CCGATTATTACCC-TTT-T-GGTGCCCATCCTGAC
gi|113683 : TTTATGCCAAATATGAAAAAATTT-GACAAACCGG----TTCTTAAGAAAAC-AGT-TTTTGTAATTCCCAATTTTT-CCT-TTTAT-GGGGCTCCT
gi|113643 : TTTATGCCAAATATGAACAAATTT-GACTGACTGA----TTCTTAAGAGAAA-GAT-TTTTGAAATTCCCAATTTTTACCA-TTT-T-GAGGCCCCTc
gi|113583 : TTTAAGCCAAATATGAACAAATAT-GACA--CCGA----TTCTTCGGAAAAC--AT-TTTTGTAATTTCCAATTTTTACCT-TTT-T-GAGGACCCTCTGGAC----TAAGTCA-CGG---CTAG--A-TTTCT-TGAATCTGCCAACCc
gi|113581 : ttaatacttatcTTTAAGCCAAATATGAACAAATAT-GACA--CCGA----TTCTTTGGAAAAC--AT-TTTTGTAATTTCCAATTTTTACCT-TTT-T-GAGGACCCTCTGGAC----TAAGTCA-CGG---CTAG--A-TTTCT-TGAATCTGCCAACCaatacatgaagttattctcagtatagtgtataatatgtaactataggccttgttttacaggtatcatggctagatttttatatgtcaaccaataaatgaagttattatcagtttagtgtctaatatgtaagaat
gi|113580 : ttaatacttatcTTTGAGCCAAATATGAACAAATAT-GACA--CCGA----TTCTTCGGAAAAC--AT-TTTTGTAATTTCCAATTTTTACCT-TTT-T-GAGGACCCTCTGGAC----TAAGTCA-CGG---CTAG--A-TTTCT-TGAATCTGCCAACCaataaatgaagttattctcagtatagtgtataatatgtaactataggccttgttttacagatctcatggctagatttttatatgtcaaccaataaatgaagttattatcagtatagtgtctaatatgtaacaat
gi|113582 : ttaatacttgtcTTTAAGCCAAATATGAACCAATAT-GACA--CCGA----TTCTTCGGAAAAC--AT-TTTTGTAATTTCCAATTTTTACCT-TTT-T-GAGGACTCTCTGGAC----TAAGTCA-CGG---CTAG--A-TTTCT-TGAATCTGCCAACCaataaatgaagttattctcagtatagtgtataatatgtaactataggccttgttttacagatctcatggctagatttttatatgtcaaccaataaattaagttattatcagtatagtgtctaatatgtaacaat
gi|113790 : ttaatacttatcTTATGCCAAATATGAACAAATAC-GACATACCAG----TTCTTAAAAAAAAAGAT-TTTTGTAATTCCCAATTTTTACCC-TTT-T-GGTGCCCCTCATGACCCCTTAAGACAGTGGAACCCAGTCATTTTTTACAAATCTG--aataaatgaagttattctcagtatagtgtataatatgtaactataggccttgttttacagatctcatggctagatttttatatgtcaaccaataaatgaagttattatcagtatagtgtctaatatgtaacaat
gi|113799 : GCCAAATATGAACAAATCT-GACATACCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCCCAACTGTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113797 : GCCAAATATGAACAAATTT-GACTGACAAG----TTCTTAAGAAAAT-GAT-TTTTGTAATTCCCTATTTTTACCC-TTT-T-GGGGCCCCT
gi|113818 : aAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-AAA-CTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAA-CCAGTCA-TTTTTACAAATCTG--AACCc
17 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|113853 ): TCACGGCTAGATTTCTATATATATGTCAATCAATAAATGAAGATATTCTCAGTATAGTGTCTAGTATTTAACTATAGGCCCTGTCTAATACAGATCTCATGGCTAGATTTCTATATGTCAACCAATAAATGAAGATATTCTCAGTATAGTGTCTAATATTT
Unaligned ( gi|113855 ): TCACGGCTAGATTTCTATATATATGTCAATCAATAAATGAAGATATTCTCAGTATAGTGTCTAGTATTTAACTATAGGCCCTGTCTAATACAGATCTCATGGCTAGATTTCTATATGTCAACCAATAAATGAAGATATTCTCAGTATAGTGTCTAATATTT
Unaligned ( gi|113851 ): TTACGGCTAGATTTCTATATATATGTCAATCAATAAATGAAGATATTCTCAGTATAGTGTCTAGTATTTAACTATAGGCCCTGTCTAATACAGATCTCATGGCTAGATTTCTATATGTCAACCAATAAATGAAGATATTCTCAGTATAGTGTCTAATATTTTAC
Unaligned ( gi|113854 ): TCATGGCTAGATTTTTATATGTCAACCAATAAATGAAGTTATTATCAGTATAGTGTCTAATATGTAACAATAGACCCTGTCTTATAGATCTCACGGCTAGATTTCTATATATATGTCAATCAATAAATGAAGATATTCTCAGTATAGTGTCTAGTATTTAACTAT
Unaligned ( gi|113852 ): TCATGGCTAGATTTTTATATGTCAACCAATAAATGAAGTTATTATCAGTATAGTGTCTAATATGTAACAATAGACCCTGTCTTATAGATCTTACGGCTAGATTTCTATATATATGTCAATCAATAAATGAAGATATTCTCAGTATAGTGTCTAGTATTTAACTAT
Unaligned ( gi|113857 ): TCACGGCTAGGTTTCTTGAATCTGTGAACCAATTAATGAAGATATTCTCAGTGTAGTGTCTAATATGTAATTATAGGTCCTGTCTTACAGATCTCATGGCTCGATTTCTTGAATCTGCAAACCAATAAATGAAGATATTCTCAGTGCAGTGTCTAATATGTA
Unaligned ( gi|113858 ): TCATGGCTAGATTTCTTCAATCTGTCAACCAATAAATGAAGATATTCTCAGTGTAGTGTCTAATATGTAACTATAGGCCCTGTCTTACAGATCTCACGGCTAGATTTCTTGAATCTGTGAACCATTTAATGATATTCTCAGTATAGTATCTAAT
Unaligned ( gi|113856 ): TCATGGCTAGATTTTTATATGTCAACCAATAAATGAAGTTATTATCAGTTTAGTGTCTAATATGTAAGAATAGACCCTGTCTTATAGATCTCACGGCTAGATTTCTATATATATGTCAATCAATAAATGAAGATATTCTCAGTATAGTGTCTAGTATTTAACTAT
Unaligned ( gi|113848 ): TCATGGCTAGATTTTTATATGTCAACCAATAAATTAAGTTATTATCAGTATAGTGTCTAATATGTAACAATAGACCCAGTCTTACAGATCTCACGGCTAGATTTCTATATATATGTCAATCAATAAATGAAGATATTCTCAGTATAGTGTCTAGTATTT
Unaligned ( gi|113859 ): TCATGACTAGATTTCTTCAATCTGCAAACCAATAAATGAAGATATTCTCAATGCAGTGTGTATATTTAGGCCTTGTCTTACAGATCTCATGGCTAGATTTCTTCAATCTGTCAACCAATAAATGAAGATATTCTCAGTGTAGTGTCTAATATGTAACTAT
Unaligned ( gi|113860 ): TCATGGCTCGATTTCTTGAATCTGCAAACCAATAAATGAAGATATTCTCAGTGCAGTGTCTAATATGTATATTTAGGCCTTGTCTTACAGATCTCATGGCTACATTTCTTCAATCTGTCAACCATTTAATGATATTCTCAGTATAGTATCTAATTTGTAACTAT
Unaligned ( gi|113845 ): GAAGATATTCTCAGTGTAGTGTCTAATATGTAACTATAGGCCCTGTCTTACAGATCTCACGGCTAGATTTCTTGAATCTGTGAACCATTTAATGATATTCTCAGTATAGTATCTAATTTGTCGCTATAGGCCTTGTCTTACAGATCTCACGGCTAGGTTTCTTGAATCTGTGAACCAATTAATGAAGATATTCTCAGTGTAGTGTCTAATATGTAA
Unaligned ( gi|113861 ): TCATGGCTACATTTCTTCAATCTGTCAACCATTTAATGATATTCTCAGTATAGTATCTAATTTGTAACTATAGGCCTTTTCTTACAGATCTCACGGCTAGATTTCTTGAATCTGTGAACCAATTAATGAAGATATTCTCAGTGTTTTGTCTAATATTTAACTAT
Unaligned ( gi|113862 ): TCACGGCTAGATTTCTTGAATCTGTGAACCAATTAATGAAGATATTCTCAGTGTTTTGTCTAATATTTAACTATAGGCCCTGTCTTACAGATCTCATGGCTACATTTCTTCAATCTGCCAACCAATAAAAGATATTTTCAGTGGATATGGTTAATA
Unaligned ( gi|113863 ): TCACGGCTAGATTTCTTCAATCAGCCCACCAATAAATGAAGATATTCTCAGCATATTGTCTATTATTTAACTATAGGCCCTGTCTTACAGATCTCACGGCTAGATTTCT
Unaligned ( gi|113884 ): TATTTAACTATAGGCCCTGTCTAATACAGATCTCATGGCTAGATTTCTATATGTCAACCAATAAATGAAGACATTCTCAGTATAGTGTCTAATATTTTAC
Unaligned ( gi|113885 ): TATTTAACTATAGGCCCTGTCTTACAGATCTCACGGCTAGATTTCTTCAATCAGCCCACCAATAAATGAAGATATTCTCAGCATATTGTCTATTATTTAACTAT
Alignments
lowQualScore : 0 1111 0 0 1 1 0 0 3 66
lowQualScore : . .... . . . . . . . ..
lowQualScore : 5 0000 5 5 9 0 5 5 8 99
consensus : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAT-TTTNGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
Reference ( family-145 ) : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAT-TTTNGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
gi|113580 : TTTGAGCCAAATATGAACAAATAT-GACA--CCGA----TTCTTCGGAAAAC--AT-TTTTGTAATTTCCAATTTTTACCT-TTT-T-GAGGACCCTCTGGAC----TAAGTCA-CGG---CTAG--A-TTTCT-TGAATCTGCCAACC
gi|113581 : ttaatacttgtcTTTAAGCCAAATATGAACAAATAT-GACA--CCGA----TTCTTTGGAAAAC--AT-TTTTGTAATTTCCAATTTTTACCT-TTT-T-GAGGACCCTCTGGAC----TAAGTCA-CGG---CTAG--A-TTTCT-TGAATCTGCCAACCaataaatgaagttattctcagtatagtgtataatatgtaactataggccttgttttacagatctcatggctagatttttatatgtcaaccaataaattaagttattatcagtatagtgtctaatatgtaacaat
gi|113582 : ttaatacttatcTTTAAGCCAAATATGAACCAATAT-GACA--CCGA----TTCTTCGGAAAAC--AT-TTTTGTAATTTCCAATTTTTACCT-TTT-T-GAGGACTCTCTGGAC----TAAGTCA-CGG---CTAG--A-TTTCT-TGAATCTGCCAACCaataaatgaagttattctcagtatagtgtataatatgtaactataggccttgttttacagatctcatggctagatttttatatgtcaaccaataaatgaagttattatcagtatagtgtctaatatgtaacaat
gi|113583 : ttaatacttatcTTTAAGCCAAATATGAACAAATAT-GACA--CCGA----TTCTTCGGAAAAC--AT-TTTTGTAATTTCCAATTTTTACCT-TTT-T-GAGGACCCTCTGGAC----TAAGTCA-CGG---CTAG--A-TTTCT-TGAATCTGCCAACCaataaatgaagttattctcagtatagtgtataatatgtaactataggccttgttttacagatctcatggctagatttttatatgtcaaccaataaatgaagttattatcagtatagtgtctaatatgtaacaat
gi|113587 : ttaatacttatcTTTTTGCCAAATATGAACAAATCT-GACATACCAG----TTCTTAAGAAAAC-AGT-TTTTGTAATTCGCAATTTTTACCC-TTT-T-GTGGCCCCTCCAGACaatacatgaagttattctcagtatagtgtataatatgtaactataggccttgttttacaggtatcatggctagatttttatatgtcaaccaataaatgaagttattatcagtttagtgtctaatatgtaagaat
gi|113588 : atacTTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113589 : tatTTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAT-GAT-TTTAGTAATTCCCAATTTTAACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113590 : tatTTTATGCCAAATATGAACAAATCT-GACATACCAG----TTCTTAAGAAAAT-GAT-TTTAGTAATTCCCAATTTGTACCC-TTT-T-GGGGCCCTTCCTGACCCCTTAAGACAGTGGAACTTAGTCA-TTTTTACAAATCTG--AACC
gi|113592 : tatTTTATGCCAAATATGAACAAATCT-GACTTACCCA----TTCTTAAGAAAAC-AAT-TTTTGGAATTCTCAATTTTTACCA-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCCAGTCA-TTTTTAGAAATCTG--AACC
gi|113599 : ataTTTATATCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-AAA-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCGCTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
gi|113600 : TTTA-GCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAT-GAT-TTTTGTAATTCCCAATTTTTACCC-TTT-T-GAGGTCCCTCCTGAC
gi|113601 : tTTTACGCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAT-GAT-TTTTGTAATTCCCAATTTTTACCA-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCCAGTTT-TTTTTACAAATCTG--AACC
gi|113602 : TTTATGCCAAATATGAACAAATCT-GACATGCCG-----TTCTTAAGAAAAC-AGT-TTT-GTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113603 : TTTATGCCAAATATGAACAAATCT-GACATACCAG----TTCTTAAGAAAAC-GAT-TTTTGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTC
gi|113606 : TTTATGCCAAATATGAACAAATCT-GACATACGGA----TTCTTAAGAAAGC-GAT-TTTTGTAATTCCTAATTTTTACCC-TTT-T-GGGG-CCCTCCTGACCCCTTAAGACGAC-GAATCCAGTCA-TTTTTACAAATCTG--AACC
gi|113607 : TTTATGCCAAATATGAACAAATCT-AACATACCGG----TTCTTAAGAAAAC-GAT-TTTAGTAATTCCCAATTTTTACCA-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
gi|113608 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113609 : TTTATGCCAAATATGAACAAATCT-GACATAACGG----TTCTTAAGAAAAC-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113610 : TTTACACCAAATATGAAAATATCT-GACATACTGG----TTCTTAAGAAAAC-GAT-TTTTGTAATTCCCAATTTTTACCT-TTT-T-GGGGCCCCTCCTGACCCTTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
gi|113611 : TTTATGCCAAATATGAACAAATCT-GACATACCAG----CTCCTAAGAAAAC-GAT-TTTTGTAATTCCAAATTTTTACCC-TTT-T-GAGGCCCCTCCTGAC
gi|113612 : TTTATGCCAAATATGAACAAATCT-GACATACCAG----TTCTTAAATAAAC-AGT-TTTTGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCCCTTA----AGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
gi|113613 : TTTATACCAAATATGAACAAATCT-AACATACCGG----TTCTTAAGAAAAC-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCCCGTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
gi|113615 : TTTATGCCAAATATAAACAAATCT-GAAATACCGG----TTCTTAAGAAAAC-GAT-TTTTGTAATTCCCAATTTTTACCC-TTT-T-AGGGCCCCTCCTGAC
gi|113616 : TTTATGCAAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAA-TTTTGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCAAGTCA-TTTTTACAAATCTG--AACC
gi|113617 : TTTATGCCAAACACGAACAAATTT-GACATACCAG----TTCTTCAGAAAAC-ATT-TTTAGTAATTCTCAATTTTTGCCC-TTT-T-GGGGCCCCTCCTGAACCCTTAAGACAGTGGAAACTAGTCA--TTTTACAAAACTG--AACC
gi|113619 : TTTATGCAAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-AA--TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113623 : TTTATGCCAAATATGAACAAATCT-GACCTACCGG----TTCTTAAGAAAAC-GAT-TTTAGCAATTCCCAATTTTTACCC-CTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGATCCCAGTCA--TTTTACTAATCTG--AACC
gi|113624 : TTTATGCCAAATATGAACAAGTCT-GACATACCGG----TTCTTAAGAAAAC-GAT-TTTAGTAATTACCAGTTTTTACCC-TTT-T-GATGCCCCTCCTGACCCCTTAAGACAATGGAACCCAGTCA-TTTTTACAAATCTG--AACC
gi|113626 : TTTATGCCAAATATGAACAAATCT-GGCATACCGG----TTCCTAAGAAAAC-GAT-TTTTGTAATTCCCAATTTTTACCC-TTT-T-TGGGCCCCTCCTAACCCTTTAAGACAGTGGAACCAAGTCA-TTTTTATAAATCTG--AACC
gi|113627 : TTTATGCCGAACATGAACAAATTT-GACTTACCGG----TTCTTAAGAAAAA-GAT-TTTTGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113628 : TTTATGCCAAAAATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAT-TTTTGTAA-TCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113629 : TTTATGCTAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTACTG
gi|113630 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAT-TTTAGCAATTCCCAATTTTCACCC-TTT-T-GGGGCCCCTTCTGACCCCTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
gi|113631 : TTTATGCCAAATATGAACAAATCT-GACATAACGG----TTCTTAAGAAAAG-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCTTCCTGACCCCTTAAGACAGTGGAACCCAGTCATTTTTTACAAATCTG--AACC
gi|113632 : TTTATGCCAAATATGAACAAATCT-GACATAACGG----TTCTTAAGAAAAG-GAT-TTTTGTAATTCCGAATTTTTACCC-TTT-T-GGGG-CCCTCCTGAC
gi|113633 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-CAA-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTTCTGACACCTTAAGACAGTGG-----AGTCA-TTTTTACAAATCTG--
gi|113636 : TTTATGCCAAATATGAACAAATCT-GACATACTGG----TTCTTAAGAAAAT-GAT-TTTCATAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113639 : TTTATACCAAATATGAACAATTCT-AACATACCGG----TTCTTAAGAAAAC-AAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGA----TTAGAACAGT
gi|113640 : TTTATGCAAAATATGAACAAATCT-GACATACCGG----TTGTTAAGAAAAC-ACA-TTTAGTAATTCCCAATTTTTACCT-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACCttgtctccaggacctgcaacaatgccaata
gi|113642 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCCCCATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113643 : TTTATGCCAAATATGAACAAATTT-GACTGACTGA----TTCTTAAGAGAAA-GAT-TTTTGAAATTCCCAATTTTTACCA-TTT-T-GAGGCCCCTC
gi|113644 : TTTATGCCAAATATGAACAAATAT-GACCTACCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCCAAATTTTTACCC-TTT-T-GGGGCCACTCCTGAC
gi|113645 : TTTATGCAAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAA-TTTAGTAATTCCGAATTTTTACCC-TTT-T-GAGGCCCCTCCTGAC
gi|113646 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAT-TTTAGTAATTCTGAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACC
gi|113647 : TTTATGCCAAATATGAACAAATCT-GACATACTGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCTGAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCCATTGA-TTTTATCAAATCTG--AACCa
gi|113649 : TTTATGCCATATATGAACAAATCT-GACA--CCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCTGAATTTTTACCC-TTT-T-GGGGGCCCTCCTGAC
gi|113650 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCTGAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113651 : TTTATGCCAAATATGAACAAATTT-GACAGACCGG----TTCTTCGGAAAAC-AAT-TTTTGTAATT-CCGATTATTACCC-TTT-T-GGTGCCCATCCTGAC
gi|113653 : TTTATGCCAAATATGAACAAATCT-GATATACCGG----TTCTCAAGAAAGC-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113654 : TTTATGCCAAATATAAACAAATCT-GACATACCGG----TTCTTAAAAAAAA-GAT-TTTTGTAATTCCCAATTTTTACCC-TTT-T-GGGGCTCCTCCTGAC
gi|113656 : TTTATACCAAATATGAACAAATCT-GACATACCGG----TTCTCAAGAAAAT-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113657 : TTTATGCAAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAA-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCCAGTAA-TTTTTACAAATCTG--
gi|113658 : TTTATGCAAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAA-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113659 : TTTATGCCAAATATGAACACATCT-GCCTTACCGG----TTCTTAAGAAAAC--AT-TTTT-TAATTCCTAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113660 : TTTATGCAAAATATGAACAAATCT-GAAATACCGG----TTCTTAAGAAAAC-GAA-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCCAGTAA-TTTTTACAAATCTG--AACC
gi|113661 : TTTATGCCAAATATGAACAAATTT-GACTGACTGA----TTCTTAAGAGAAA-TAT-TTTTGAAATTCCCAGTTTTTACCC-TTT-T-TGGGCCCCTCCTGAC
gi|113662 : TTTATGCCAAATATGAACAAATCT-GACATACCAG----TTCTTAAGAAAAT-GAT-TTTTGTAACTCCAAATTTTTACCC-TTT-TGGGGGCCCCTCCTGAC
gi|113663 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATCCTCAATTTTTACCC-TTT-T-GGGACCCCTCCTGAC
gi|113664 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTCAAG-AAAC-GAT-TTTAGTAATTCTCAATTTTTACCC-TTT-T--GGGCCCCTCCTGAC
gi|113665 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCCCCATTTTTACCC-TTT-T-TGGGCCCCTCCTGAC
gi|113666 : TTTATGCAAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAA-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGAGCCCCTCCTGAC
gi|113668 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAT-TTTAGTTATTCACAATTTTTACCC-TTT-T-GGGGCCCCTC
gi|113669 : TTTATGCAAAATATGAACAAATCT-GAAATACCGG----TTGTTAAGAAAAC-GAA-TTTTGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGGCCCCTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--
gi|113672 : TTTATGCCAAATATGAACAAATCT-GACATACCAG----TTCTTAAGAAAAC-AAA-TTTAGTAATTCCCAATTTTTACCCTTTT-T-GGAGCCCCTCCTGAC
gi|113673 : TTTATGCCAAATACGAACACATCT-GACAAACCGG----TTCTTAAGAAAAC-GAT-TTT-GTAATTTCCCATTGTTACCA-TTT-T-GGGGCCCCTCCTGACCCATTAAGACAGTGGATCCCAGTCA-TTTTTACAAATCTG--
gi|113674 : TTTATGCCAAATATGAACAAATCT-GACATACCTG----TTCTTAAGAAAAC-AGT-TTTTGCAATTCCCAATTTTTACCC-TTT-T-GGCGCCCC
gi|113676 : TTTATGCAAAATATGAACAAATCT-GACATACCAG----TTCTTAAGAAAAC-GAA-TTTAGTAATTCCCAATTTTTACCC-TTT-T--GGGCCCCTCCTGACCCTTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACCct
gi|113677 : TTTATGCAAAATATGAACAAATCT-GACATACCAG----TTCTTAAGAAAAC-GAA-TTTAGTAATTCCCAATTTTTACCC-TTT-T--GGGCCCCTCCTGACCCTTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
gi|113678 : TTTATGCTAAATATGAACAAATCTTGACATACTGG----TTCTTAAGAAAAC-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCTCTCCTGAC
gi|113679 : TTTATGCAAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC--ATATTTAGTAATTCCCCATTTTTACCC-TTT-T-GGGGCCACTCCTGAC
gi|113680 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAT-TTTAGTAATTCCCAAATTTTACCC--TT-T-GGAGCCCCTCCTGAC
gi|113681 : TTTATGCAAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAA-TTTAGTAATTCCCAATTTGTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113683 : TTTATGCCAAATATGAAAAAATTT-GACAAACCGG----TTCTTAAGAAAAC-AGT-TTTTGTAATTCCCAATTTTT-CCT-TTTAT-GGGGCTCCTC
gi|113685 : TTTATGCCAAATATGAACAAATCT-GACTTACCGGCCGGTTCTTAAGAAAAC-AAT-TTTTGTAATTCCTAATTTTTACCCATTT-T-GGGGCCTTTC
gi|113686 : TTTATGCCAGTTATGAACTAATCT-GACATACCAG----TTCTTAAGAAAAT-ATT-TTTTGTAATTCCCAATTTTTACCC-TTT-T-GGTGCCCCTCCTGACCCCTTAAGACAATGGAACCCAGTCATTTTTTTCAAATCTG--AACCtg
gi|113687 : TTTATGGCAAATATGAACAAATCT-GACATACCGT----TTTTTAAGAAAAC-GAT-TATGGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113689 : TTTATGCCAAATATGAACAAATTT-GACTGACTAT----TTCTTTAGAGAAA-GAT-TTTTGAAATTCCCAATTTTTATCC-TTT-T-GGGGCCCCTCCTGAC
gi|113787 : TTAATGCCAAATATGAACAAATCT-GACATACCAG----TTCTTTAGAAAAC-GAT-TTTTGTAATTCCCAATTTTTACCT-TTT-T-GGGGCCCCTCCTGAC
gi|113789 : TTAATGCCAAATATGAACAAATCT-GACATACCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113790 : TTATGCCAAATATGAACAAATAC-GACATACCAG----TTCTTAAAAAAAAAGAT-TTTTGTAATTCCCAATTTTTACCC-TTT-T-GGTGCCCCTCATGACCCCTTAAGACAGTGGAACCCAGTCATTTTTTACAAATCTG--
gi|113797 : GCCAAATATGAACAAATTT-GACTGACAAG----TTCTTAAGAAAAT-GAT-TTTTGTAATTCCCTATTTTTACCC-TTT-T-GGGGCCCCTC
gi|113799 : aGCCAAATATGAACAAATCT-GACATACCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCCCAACTGTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113818 : AAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-AAA-CTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAA-CCAGTCA-TTTTTACAAATCTG--AACC
17 sequences could not be aligned to this reference sequence:
Unaligned ( gi|113853 ): TCACGGCTAGATTTCTATATATATGTCAATCAATAAATGAAGATATTCTCAGTATAGTGTCTAGTATTTAACTATAGGCCCTGTCTAATACAGATCTCATGGCTAGATTTCTATATGTCAACCAATAAATGAAGATATTCTCAGTATAGTGTCTAATATTT
Unaligned ( gi|113855 ): TCACGGCTAGATTTCTATATATATGTCAATCAATAAATGAAGATATTCTCAGTATAGTGTCTAGTATTTAACTATAGGCCCTGTCTAATACAGATCTCATGGCTAGATTTCTATATGTCAACCAATAAATGAAGATATTCTCAGTATAGTGTCTAATATTT
Unaligned ( gi|113851 ): TTACGGCTAGATTTCTATATATATGTCAATCAATAAATGAAGATATTCTCAGTATAGTGTCTAGTATTTAACTATAGGCCCTGTCTAATACAGATCTCATGGCTAGATTTCTATATGTCAACCAATAAATGAAGATATTCTCAGTATAGTGTCTAATATTTTAC
Unaligned ( gi|113854 ): TCATGGCTAGATTTTTATATGTCAACCAATAAATGAAGTTATTATCAGTATAGTGTCTAATATGTAACAATAGACCCTGTCTTATAGATCTCACGGCTAGATTTCTATATATATGTCAATCAATAAATGAAGATATTCTCAGTATAGTGTCTAGTATTTAACTAT
Unaligned ( gi|113852 ): TCATGGCTAGATTTTTATATGTCAACCAATAAATGAAGTTATTATCAGTATAGTGTCTAATATGTAACAATAGACCCTGTCTTATAGATCTTACGGCTAGATTTCTATATATATGTCAATCAATAAATGAAGATATTCTCAGTATAGTGTCTAGTATTTAACTAT
Unaligned ( gi|113857 ): TCACGGCTAGGTTTCTTGAATCTGTGAACCAATTAATGAAGATATTCTCAGTGTAGTGTCTAATATGTAATTATAGGTCCTGTCTTACAGATCTCATGGCTCGATTTCTTGAATCTGCAAACCAATAAATGAAGATATTCTCAGTGCAGTGTCTAATATGTA
Unaligned ( gi|113858 ): TCATGGCTAGATTTCTTCAATCTGTCAACCAATAAATGAAGATATTCTCAGTGTAGTGTCTAATATGTAACTATAGGCCCTGTCTTACAGATCTCACGGCTAGATTTCTTGAATCTGTGAACCATTTAATGATATTCTCAGTATAGTATCTAAT
Unaligned ( gi|113856 ): TCATGGCTAGATTTTTATATGTCAACCAATAAATGAAGTTATTATCAGTTTAGTGTCTAATATGTAAGAATAGACCCTGTCTTATAGATCTCACGGCTAGATTTCTATATATATGTCAATCAATAAATGAAGATATTCTCAGTATAGTGTCTAGTATTTAACTAT
Unaligned ( gi|113848 ): TCATGGCTAGATTTTTATATGTCAACCAATAAATTAAGTTATTATCAGTATAGTGTCTAATATGTAACAATAGACCCAGTCTTACAGATCTCACGGCTAGATTTCTATATATATGTCAATCAATAAATGAAGATATTCTCAGTATAGTGTCTAGTATTT
Unaligned ( gi|113859 ): TCATGACTAGATTTCTTCAATCTGCAAACCAATAAATGAAGATATTCTCAATGCAGTGTGTATATTTAGGCCTTGTCTTACAGATCTCATGGCTAGATTTCTTCAATCTGTCAACCAATAAATGAAGATATTCTCAGTGTAGTGTCTAATATGTAACTAT
Unaligned ( gi|113860 ): TCATGGCTCGATTTCTTGAATCTGCAAACCAATAAATGAAGATATTCTCAGTGCAGTGTCTAATATGTATATTTAGGCCTTGTCTTACAGATCTCATGGCTACATTTCTTCAATCTGTCAACCATTTAATGATATTCTCAGTATAGTATCTAATTTGTAACTAT
Unaligned ( gi|113845 ): GAAGATATTCTCAGTGTAGTGTCTAATATGTAACTATAGGCCCTGTCTTACAGATCTCACGGCTAGATTTCTTGAATCTGTGAACCATTTAATGATATTCTCAGTATAGTATCTAATTTGTCGCTATAGGCCTTGTCTTACAGATCTCACGGCTAGGTTTCTTGAATCTGTGAACCAATTAATGAAGATATTCTCAGTGTAGTGTCTAATATGTAA
Unaligned ( gi|113861 ): TCATGGCTACATTTCTTCAATCTGTCAACCATTTAATGATATTCTCAGTATAGTATCTAATTTGTAACTATAGGCCTTTTCTTACAGATCTCACGGCTAGATTTCTTGAATCTGTGAACCAATTAATGAAGATATTCTCAGTGTTTTGTCTAATATTTAACTAT
Unaligned ( gi|113862 ): TCACGGCTAGATTTCTTGAATCTGTGAACCAATTAATGAAGATATTCTCAGTGTTTTGTCTAATATTTAACTATAGGCCCTGTCTTACAGATCTCATGGCTACATTTCTTCAATCTGCCAACCAATAAAAGATATTTTCAGTGGATATGGTTAATA
Unaligned ( gi|113863 ): TCACGGCTAGATTTCTTCAATCAGCCCACCAATAAATGAAGATATTCTCAGCATATTGTCTATTATTTAACTATAGGCCCTGTCTTACAGATCTCACGGCTAGATTTCT
Unaligned ( gi|113884 ): TATTTAACTATAGGCCCTGTCTAATACAGATCTCATGGCTAGATTTCTATATGTCAACCAATAAATGAAGACATTCTCAGTATAGTGTCTAATATTTTAC
Unaligned ( gi|113885 ): TATTTAACTATAGGCCCTGTCTTACAGATCTCACGGCTAGATTTCTTCAATCAGCCCACCAATAAATGAAGATATTCTCAGCATATTGTCTATTATTTAACTAT
Alignments
lowQualScore : 0 1111 0 0 1 1 0 0 3 66
lowQualScore : . .... . . . . . . . ..
lowQualScore : 5 0000 5 5 9 0 5 5 8 99
consensus : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAT-TTTNGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
Reference ( family-145 ) : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAT-TTTNGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
gi|113580 : TTTGAGCCAAATATGAACAAATAT-GACA--CCGA----TTCTTCGGAAAAC--AT-TTTTGTAATTTCCAATTTTTACCT-TTT-T-GAGGACCCTCTGGAC----TAAGTCA-CGG---CTAG--A-TTTCT-TGAATCTGCCAACC
gi|113581 : ttaatacttgtcTTTAAGCCAAATATGAACAAATAT-GACA--CCGA----TTCTTTGGAAAAC--AT-TTTTGTAATTTCCAATTTTTACCT-TTT-T-GAGGACCCTCTGGAC----TAAGTCA-CGG---CTAG--A-TTTCT-TGAATCTGCCAACCaataaatgaagttattctcagtatagtgtataatatgtaactataggccttgttttacagatctcatggctagatttttatatgtcaaccaataaattaagttattatcagtatagtgtctaatatgtaacaat
gi|113582 : ttaatacttatcTTTAAGCCAAATATGAACCAATAT-GACA--CCGA----TTCTTCGGAAAAC--AT-TTTTGTAATTTCCAATTTTTACCT-TTT-T-GAGGACTCTCTGGAC----TAAGTCA-CGG---CTAG--A-TTTCT-TGAATCTGCCAACCaataaatgaagttattctcagtatagtgtataatatgtaactataggccttgttttacagatctcatggctagatttttatatgtcaaccaataaatgaagttattatcagtatagtgtctaatatgtaacaat
gi|113583 : ttaatacttatcTTTAAGCCAAATATGAACAAATAT-GACA--CCGA----TTCTTCGGAAAAC--AT-TTTTGTAATTTCCAATTTTTACCT-TTT-T-GAGGACCCTCTGGAC----TAAGTCA-CGG---CTAG--A-TTTCT-TGAATCTGCCAACCaataaatgaagttattctcagtatagtgtataatatgtaactataggccttgttttacagatctcatggctagatttttatatgtcaaccaataaatgaagttattatcagtatagtgtctaatatgtaacaat
gi|113587 : ttaatacttatcTTTTTGCCAAATATGAACAAATCT-GACATACCAG----TTCTTAAGAAAAC-AGT-TTTTGTAATTCGCAATTTTTACCC-TTT-T-GTGGCCCCTCCAGACaatacatgaagttattctcagtatagtgtataatatgtaactataggccttgttttacaggtatcatggctagatttttatatgtcaaccaataaatgaagttattatcagtttagtgtctaatatgtaagaat
gi|113588 : atacTTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113589 : tatTTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAT-GAT-TTTAGTAATTCCCAATTTTAACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113590 : tatTTTATGCCAAATATGAACAAATCT-GACATACCAG----TTCTTAAGAAAAT-GAT-TTTAGTAATTCCCAATTTGTACCC-TTT-T-GGGGCCCTTCCTGACCCCTTAAGACAGTGGAACTTAGTCA-TTTTTACAAATCTG--AACC
gi|113592 : tatTTTATGCCAAATATGAACAAATCT-GACTTACCCA----TTCTTAAGAAAAC-AAT-TTTTGGAATTCTCAATTTTTACCA-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCCAGTCA-TTTTTAGAAATCTG--AACC
gi|113599 : ataTTTATATCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-AAA-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCGCTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
gi|113600 : TTTA-GCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAT-GAT-TTTTGTAATTCCCAATTTTTACCC-TTT-T-GAGGTCCCTCCTGAC
gi|113601 : tTTTACGCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAT-GAT-TTTTGTAATTCCCAATTTTTACCA-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCCAGTTT-TTTTTACAAATCTG--AACC
gi|113602 : TTTATGCCAAATATGAACAAATCT-GACATGCCG-----TTCTTAAGAAAAC-AGT-TTT-GTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113603 : TTTATGCCAAATATGAACAAATCT-GACATACCAG----TTCTTAAGAAAAC-GAT-TTTTGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTC
gi|113606 : TTTATGCCAAATATGAACAAATCT-GACATACGGA----TTCTTAAGAAAGC-GAT-TTTTGTAATTCCTAATTTTTACCC-TTT-T-GGGG-CCCTCCTGACCCCTTAAGACGAC-GAATCCAGTCA-TTTTTACAAATCTG--AACC
gi|113607 : TTTATGCCAAATATGAACAAATCT-AACATACCGG----TTCTTAAGAAAAC-GAT-TTTAGTAATTCCCAATTTTTACCA-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
gi|113608 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113609 : TTTATGCCAAATATGAACAAATCT-GACATAACGG----TTCTTAAGAAAAC-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113610 : TTTACACCAAATATGAAAATATCT-GACATACTGG----TTCTTAAGAAAAC-GAT-TTTTGTAATTCCCAATTTTTACCT-TTT-T-GGGGCCCCTCCTGACCCTTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
gi|113611 : TTTATGCCAAATATGAACAAATCT-GACATACCAG----CTCCTAAGAAAAC-GAT-TTTTGTAATTCCAAATTTTTACCC-TTT-T-GAGGCCCCTCCTGAC
gi|113612 : TTTATGCCAAATATGAACAAATCT-GACATACCAG----TTCTTAAATAAAC-AGT-TTTTGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCCCTTA----AGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
gi|113613 : TTTATACCAAATATGAACAAATCT-AACATACCGG----TTCTTAAGAAAAC-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCCCGTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
gi|113615 : TTTATGCCAAATATAAACAAATCT-GAAATACCGG----TTCTTAAGAAAAC-GAT-TTTTGTAATTCCCAATTTTTACCC-TTT-T-AGGGCCCCTCCTGAC
gi|113616 : TTTATGCAAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAA-TTTTGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCAAGTCA-TTTTTACAAATCTG--AACC
gi|113617 : TTTATGCCAAACACGAACAAATTT-GACATACCAG----TTCTTCAGAAAAC-ATT-TTTAGTAATTCTCAATTTTTGCCC-TTT-T-GGGGCCCCTCCTGAACCCTTAAGACAGTGGAAACTAGTCA--TTTTACAAAACTG--AACC
gi|113619 : TTTATGCAAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-AA--TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113623 : TTTATGCCAAATATGAACAAATCT-GACCTACCGG----TTCTTAAGAAAAC-GAT-TTTAGCAATTCCCAATTTTTACCC-CTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGATCCCAGTCA--TTTTACTAATCTG--AACC
gi|113624 : TTTATGCCAAATATGAACAAGTCT-GACATACCGG----TTCTTAAGAAAAC-GAT-TTTAGTAATTACCAGTTTTTACCC-TTT-T-GATGCCCCTCCTGACCCCTTAAGACAATGGAACCCAGTCA-TTTTTACAAATCTG--AACC
gi|113626 : TTTATGCCAAATATGAACAAATCT-GGCATACCGG----TTCCTAAGAAAAC-GAT-TTTTGTAATTCCCAATTTTTACCC-TTT-T-TGGGCCCCTCCTAACCCTTTAAGACAGTGGAACCAAGTCA-TTTTTATAAATCTG--AACC
gi|113627 : TTTATGCCGAACATGAACAAATTT-GACTTACCGG----TTCTTAAGAAAAA-GAT-TTTTGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113628 : TTTATGCCAAAAATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAT-TTTTGTAA-TCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113629 : TTTATGCTAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTACTG
gi|113630 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAT-TTTAGCAATTCCCAATTTTCACCC-TTT-T-GGGGCCCCTTCTGACCCCTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
gi|113631 : TTTATGCCAAATATGAACAAATCT-GACATAACGG----TTCTTAAGAAAAG-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCTTCCTGACCCCTTAAGACAGTGGAACCCAGTCATTTTTTACAAATCTG--AACC
gi|113632 : TTTATGCCAAATATGAACAAATCT-GACATAACGG----TTCTTAAGAAAAG-GAT-TTTTGTAATTCCGAATTTTTACCC-TTT-T-GGGG-CCCTCCTGAC
gi|113633 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-CAA-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTTCTGACACCTTAAGACAGTGG-----AGTCA-TTTTTACAAATCTG--
gi|113636 : TTTATGCCAAATATGAACAAATCT-GACATACTGG----TTCTTAAGAAAAT-GAT-TTTCATAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113639 : TTTATACCAAATATGAACAATTCT-AACATACCGG----TTCTTAAGAAAAC-AAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGA----TTAGAACAGT
gi|113640 : TTTATGCAAAATATGAACAAATCT-GACATACCGG----TTGTTAAGAAAAC-ACA-TTTAGTAATTCCCAATTTTTACCT-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACCttgtctccaggacctgcaacaatgccaata
gi|113642 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCCCCATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113643 : TTTATGCCAAATATGAACAAATTT-GACTGACTGA----TTCTTAAGAGAAA-GAT-TTTTGAAATTCCCAATTTTTACCA-TTT-T-GAGGCCCCTC
gi|113644 : TTTATGCCAAATATGAACAAATAT-GACCTACCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCCAAATTTTTACCC-TTT-T-GGGGCCACTCCTGAC
gi|113645 : TTTATGCAAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAA-TTTAGTAATTCCGAATTTTTACCC-TTT-T-GAGGCCCCTCCTGAC
gi|113646 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAT-TTTAGTAATTCTGAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACC
gi|113647 : TTTATGCCAAATATGAACAAATCT-GACATACTGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCTGAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCCATTGA-TTTTATCAAATCTG--AACCa
gi|113649 : TTTATGCCATATATGAACAAATCT-GACA--CCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCTGAATTTTTACCC-TTT-T-GGGGGCCCTCCTGAC
gi|113650 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCTGAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113651 : TTTATGCCAAATATGAACAAATTT-GACAGACCGG----TTCTTCGGAAAAC-AAT-TTTTGTAATT-CCGATTATTACCC-TTT-T-GGTGCCCATCCTGAC
gi|113653 : TTTATGCCAAATATGAACAAATCT-GATATACCGG----TTCTCAAGAAAGC-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113654 : TTTATGCCAAATATAAACAAATCT-GACATACCGG----TTCTTAAAAAAAA-GAT-TTTTGTAATTCCCAATTTTTACCC-TTT-T-GGGGCTCCTCCTGAC
gi|113656 : TTTATACCAAATATGAACAAATCT-GACATACCGG----TTCTCAAGAAAAT-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113657 : TTTATGCAAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAA-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCCAGTAA-TTTTTACAAATCTG--
gi|113658 : TTTATGCAAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAA-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113659 : TTTATGCCAAATATGAACACATCT-GCCTTACCGG----TTCTTAAGAAAAC--AT-TTTT-TAATTCCTAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113660 : TTTATGCAAAATATGAACAAATCT-GAAATACCGG----TTCTTAAGAAAAC-GAA-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCCAGTAA-TTTTTACAAATCTG--AACC
gi|113661 : TTTATGCCAAATATGAACAAATTT-GACTGACTGA----TTCTTAAGAGAAA-TAT-TTTTGAAATTCCCAGTTTTTACCC-TTT-T-TGGGCCCCTCCTGAC
gi|113662 : TTTATGCCAAATATGAACAAATCT-GACATACCAG----TTCTTAAGAAAAT-GAT-TTTTGTAACTCCAAATTTTTACCC-TTT-TGGGGGCCCCTCCTGAC
gi|113663 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATCCTCAATTTTTACCC-TTT-T-GGGACCCCTCCTGAC
gi|113664 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTCAAG-AAAC-GAT-TTTAGTAATTCTCAATTTTTACCC-TTT-T--GGGCCCCTCCTGAC
gi|113665 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCCCCATTTTTACCC-TTT-T-TGGGCCCCTCCTGAC
gi|113666 : TTTATGCAAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAA-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGAGCCCCTCCTGAC
gi|113668 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAT-TTTAGTTATTCACAATTTTTACCC-TTT-T-GGGGCCCCTC
gi|113669 : TTTATGCAAAATATGAACAAATCT-GAAATACCGG----TTGTTAAGAAAAC-GAA-TTTTGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGGCCCCTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--
gi|113672 : TTTATGCCAAATATGAACAAATCT-GACATACCAG----TTCTTAAGAAAAC-AAA-TTTAGTAATTCCCAATTTTTACCCTTTT-T-GGAGCCCCTCCTGAC
gi|113673 : TTTATGCCAAATACGAACACATCT-GACAAACCGG----TTCTTAAGAAAAC-GAT-TTT-GTAATTTCCCATTGTTACCA-TTT-T-GGGGCCCCTCCTGACCCATTAAGACAGTGGATCCCAGTCA-TTTTTACAAATCTG--
gi|113674 : TTTATGCCAAATATGAACAAATCT-GACATACCTG----TTCTTAAGAAAAC-AGT-TTTTGCAATTCCCAATTTTTACCC-TTT-T-GGCGCCCC
gi|113676 : TTTATGCAAAATATGAACAAATCT-GACATACCAG----TTCTTAAGAAAAC-GAA-TTTAGTAATTCCCAATTTTTACCC-TTT-T--GGGCCCCTCCTGACCCTTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACCct
gi|113677 : TTTATGCAAAATATGAACAAATCT-GACATACCAG----TTCTTAAGAAAAC-GAA-TTTAGTAATTCCCAATTTTTACCC-TTT-T--GGGCCCCTCCTGACCCTTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
gi|113678 : TTTATGCTAAATATGAACAAATCTTGACATACTGG----TTCTTAAGAAAAC-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCTCTCCTGAC
gi|113679 : TTTATGCAAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC--ATATTTAGTAATTCCCCATTTTTACCC-TTT-T-GGGGCCACTCCTGAC
gi|113680 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAT-TTTAGTAATTCCCAAATTTTACCC--TT-T-GGAGCCCCTCCTGAC
gi|113681 : TTTATGCAAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAA-TTTAGTAATTCCCAATTTGTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113683 : TTTATGCCAAATATGAAAAAATTT-GACAAACCGG----TTCTTAAGAAAAC-AGT-TTTTGTAATTCCCAATTTTT-CCT-TTTAT-GGGGCTCCTC
gi|113685 : TTTATGCCAAATATGAACAAATCT-GACTTACCGGCCGGTTCTTAAGAAAAC-AAT-TTTTGTAATTCCTAATTTTTACCCATTT-T-GGGGCCTTTC
gi|113686 : TTTATGCCAGTTATGAACTAATCT-GACATACCAG----TTCTTAAGAAAAT-ATT-TTTTGTAATTCCCAATTTTTACCC-TTT-T-GGTGCCCCTCCTGACCCCTTAAGACAATGGAACCCAGTCATTTTTTTCAAATCTG--AACCtg
gi|113687 : TTTATGGCAAATATGAACAAATCT-GACATACCGT----TTTTTAAGAAAAC-GAT-TATGGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113689 : TTTATGCCAAATATGAACAAATTT-GACTGACTAT----TTCTTTAGAGAAA-GAT-TTTTGAAATTCCCAATTTTTATCC-TTT-T-GGGGCCCCTCCTGAC
gi|113787 : TTAATGCCAAATATGAACAAATCT-GACATACCAG----TTCTTTAGAAAAC-GAT-TTTTGTAATTCCCAATTTTTACCT-TTT-T-GGGGCCCCTCCTGAC
gi|113789 : TTAATGCCAAATATGAACAAATCT-GACATACCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113790 : TTATGCCAAATATGAACAAATAC-GACATACCAG----TTCTTAAAAAAAAAGAT-TTTTGTAATTCCCAATTTTTACCC-TTT-T-GGTGCCCCTCATGACCCCTTAAGACAGTGGAACCCAGTCATTTTTTACAAATCTG--
gi|113797 : GCCAAATATGAACAAATTT-GACTGACAAG----TTCTTAAGAAAAT-GAT-TTTTGTAATTCCCTATTTTTACCC-TTT-T-GGGGCCCCTC
gi|113799 : aGCCAAATATGAACAAATCT-GACATACCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCCCAACTGTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113818 : AAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-AAA-CTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAA-CCAGTCA-TTTTTACAAATCTG--AACC
blockSeqs : CCGG T T CC
blockSeqs : . T T CC
blockSeqs : . T T CC
blockSeqs : . T . .
blockSeqs : . A . .
blockSeqs : . A . .
blockSeqs : . A . .
blockSeqs : . T . .
blockSeqs : . A . .
blockSeqs : . T . .
blockSeqs : . T . .
blockSeqs : . T . .
blockSeqs : . T . .
blockSeqs : . A . .
blockSeqs : . A . .
blockSeqs : . A . .
blockSeqs : . T . .
blockSeqs : . T . .
blockSeqs : . T . .
blockSeqs : . A . .
blockSeqs : . T . .
blockSeqs : . T . .
blockSeqs : . A . .
blockSeqs : . A . .
blockSeqs : . A . .
blockSeqs : . A . .
blockSeqs : . T . .
blockSeqs : . T . .
blockSeqs : . T . .
blockSeqs : . A . .
blockSeqs : . A . .
blockSeqs : . A
blockSeqs : . T
blockSeqs : . A
blockSeqs : . C
blockSeqs : . A
blockSeqs : . A
blockSeqs : . A
blockSeqs : . T
blockSeqs : . A
blockSeqs : . A
blockSeqs : . A
blockSeqs : . A
blockSeqs : . A
blockSeqs : . A
blockSeqs : . T
blockSeqs : . A
blockSeqs : . T
blockSeqs : . A
blockSeqs : . A
blockSeqs : . A
blockSeqs : . T
blockSeqs : . A
blockSeqs : . T
blockSeqs : . T
blockSeqs : . A
blockSeqs : . A
blockSeqs : . A
blockSeqs : . A
blockSeqs : . A
blockSeqs : . T
blockSeqs : . A
blockSeqs : . T
blockSeqs : . A
blockSeqs : . A
blockSeqs : . A
blockSeqs : . A
blockSeqs : . A
blockSeqs : . A
blockSeqs : . T
blockSeqs : . T
blockSeqs : . T
blockSeqs : . G
blockSeqs : . T
blockSeqs : . T
blockSeqs : . A
blockSeqs : . T
blockSeqs : . T
blockSeqs : . A
blockSeqs : . A
blockSeqs : . .
blockSeqs : . .
blockSeqCons : **
originalCons : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAT-TTTNGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
finalCons : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAT-TTTNGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
17 sequences could not be aligned to this reference sequence:
Unaligned ( gi|113853 ): TCACGGCTAGATTTCTATATATATGTCAATCAATAAATGAAGATATTCTCAGTATAGTGTCTAGTATTTAACTATAGGCCCTGTCTAATACAGATCTCATGGCTAGATTTCTATATGTCAACCAATAAATGAAGATATTCTCAGTATAGTGTCTAATATTT
Unaligned ( gi|113855 ): TCACGGCTAGATTTCTATATATATGTCAATCAATAAATGAAGATATTCTCAGTATAGTGTCTAGTATTTAACTATAGGCCCTGTCTAATACAGATCTCATGGCTAGATTTCTATATGTCAACCAATAAATGAAGATATTCTCAGTATAGTGTCTAATATTT
Unaligned ( gi|113851 ): TTACGGCTAGATTTCTATATATATGTCAATCAATAAATGAAGATATTCTCAGTATAGTGTCTAGTATTTAACTATAGGCCCTGTCTAATACAGATCTCATGGCTAGATTTCTATATGTCAACCAATAAATGAAGATATTCTCAGTATAGTGTCTAATATTTTAC
Unaligned ( gi|113854 ): TCATGGCTAGATTTTTATATGTCAACCAATAAATGAAGTTATTATCAGTATAGTGTCTAATATGTAACAATAGACCCTGTCTTATAGATCTCACGGCTAGATTTCTATATATATGTCAATCAATAAATGAAGATATTCTCAGTATAGTGTCTAGTATTTAACTAT
Unaligned ( gi|113852 ): TCATGGCTAGATTTTTATATGTCAACCAATAAATGAAGTTATTATCAGTATAGTGTCTAATATGTAACAATAGACCCTGTCTTATAGATCTTACGGCTAGATTTCTATATATATGTCAATCAATAAATGAAGATATTCTCAGTATAGTGTCTAGTATTTAACTAT
Unaligned ( gi|113857 ): TCACGGCTAGGTTTCTTGAATCTGTGAACCAATTAATGAAGATATTCTCAGTGTAGTGTCTAATATGTAATTATAGGTCCTGTCTTACAGATCTCATGGCTCGATTTCTTGAATCTGCAAACCAATAAATGAAGATATTCTCAGTGCAGTGTCTAATATGTA
Unaligned ( gi|113858 ): TCATGGCTAGATTTCTTCAATCTGTCAACCAATAAATGAAGATATTCTCAGTGTAGTGTCTAATATGTAACTATAGGCCCTGTCTTACAGATCTCACGGCTAGATTTCTTGAATCTGTGAACCATTTAATGATATTCTCAGTATAGTATCTAAT
Unaligned ( gi|113856 ): TCATGGCTAGATTTTTATATGTCAACCAATAAATGAAGTTATTATCAGTTTAGTGTCTAATATGTAAGAATAGACCCTGTCTTATAGATCTCACGGCTAGATTTCTATATATATGTCAATCAATAAATGAAGATATTCTCAGTATAGTGTCTAGTATTTAACTAT
Unaligned ( gi|113848 ): TCATGGCTAGATTTTTATATGTCAACCAATAAATTAAGTTATTATCAGTATAGTGTCTAATATGTAACAATAGACCCAGTCTTACAGATCTCACGGCTAGATTTCTATATATATGTCAATCAATAAATGAAGATATTCTCAGTATAGTGTCTAGTATTT
Unaligned ( gi|113859 ): TCATGACTAGATTTCTTCAATCTGCAAACCAATAAATGAAGATATTCTCAATGCAGTGTGTATATTTAGGCCTTGTCTTACAGATCTCATGGCTAGATTTCTTCAATCTGTCAACCAATAAATGAAGATATTCTCAGTGTAGTGTCTAATATGTAACTAT
Unaligned ( gi|113860 ): TCATGGCTCGATTTCTTGAATCTGCAAACCAATAAATGAAGATATTCTCAGTGCAGTGTCTAATATGTATATTTAGGCCTTGTCTTACAGATCTCATGGCTACATTTCTTCAATCTGTCAACCATTTAATGATATTCTCAGTATAGTATCTAATTTGTAACTAT
Unaligned ( gi|113845 ): GAAGATATTCTCAGTGTAGTGTCTAATATGTAACTATAGGCCCTGTCTTACAGATCTCACGGCTAGATTTCTTGAATCTGTGAACCATTTAATGATATTCTCAGTATAGTATCTAATTTGTCGCTATAGGCCTTGTCTTACAGATCTCACGGCTAGGTTTCTTGAATCTGTGAACCAATTAATGAAGATATTCTCAGTGTAGTGTCTAATATGTAA
Unaligned ( gi|113861 ): TCATGGCTACATTTCTTCAATCTGTCAACCATTTAATGATATTCTCAGTATAGTATCTAATTTGTAACTATAGGCCTTTTCTTACAGATCTCACGGCTAGATTTCTTGAATCTGTGAACCAATTAATGAAGATATTCTCAGTGTTTTGTCTAATATTTAACTAT
Unaligned ( gi|113862 ): TCACGGCTAGATTTCTTGAATCTGTGAACCAATTAATGAAGATATTCTCAGTGTTTTGTCTAATATTTAACTATAGGCCCTGTCTTACAGATCTCATGGCTACATTTCTTCAATCTGCCAACCAATAAAAGATATTTTCAGTGGATATGGTTAATA
Unaligned ( gi|113863 ): TCACGGCTAGATTTCTTCAATCAGCCCACCAATAAATGAAGATATTCTCAGCATATTGTCTATTATTTAACTATAGGCCCTGTCTTACAGATCTCACGGCTAGATTTCT
Unaligned ( gi|113884 ): TATTTAACTATAGGCCCTGTCTAATACAGATCTCATGGCTAGATTTCTATATGTCAACCAATAAATGAAGACATTCTCAGTATAGTGTCTAATATTTTAC
Unaligned ( gi|113885 ): TATTTAACTATAGGCCCTGTCTTACAGATCTCACGGCTAGATTTCTTCAATCAGCCCACCAATAAATGAAGATATTCTCAGCATATTGTCTATTATTTAACTAT
Alignments
lowQualScore : 0 1111 0 0 1 1 0 0 3 66
lowQualScore : . .... . . . . . . . ..
lowQualScore : 5 0000 5 5 9 0 5 5 8 99
consensus : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAT-TTTNGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
Reference ( family-145 ) : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAT-TTTNGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
gi|113580 : TTTGAGCCAAATATGAACAAATAT-GACA--CCGA----TTCTTCGGAAAAC--AT-TTTTGTAATTTCCAATTTTTACCT-TTT-T-GAGGACCCTCTGGAC----TAAGTCA-CGG---CTAG--A-TTTCT-TGAATCTGCCAACC
gi|113581 : ttaatacttgtcTTTAAGCCAAATATGAACAAATAT-GACA--CCGA----TTCTTTGGAAAAC--AT-TTTTGTAATTTCCAATTTTTACCT-TTT-T-GAGGACCCTCTGGAC----TAAGTCA-CGG---CTAG--A-TTTCT-TGAATCTGCCAACCaataaatgaagttattctcagtatagtgtataatatgtaactataggccttgttttacagatctcatggctagatttttatatgtcaaccaataaattaagttattatcagtatagtgtctaatatgtaacaat
gi|113582 : ttaatacttatcTTTAAGCCAAATATGAACCAATAT-GACA--CCGA----TTCTTCGGAAAAC--AT-TTTTGTAATTTCCAATTTTTACCT-TTT-T-GAGGACTCTCTGGAC----TAAGTCA-CGG---CTAG--A-TTTCT-TGAATCTGCCAACCaataaatgaagttattctcagtatagtgtataatatgtaactataggccttgttttacagatctcatggctagatttttatatgtcaaccaataaatgaagttattatcagtatagtgtctaatatgtaacaat
gi|113583 : ttaatacttatcTTTAAGCCAAATATGAACAAATAT-GACA--CCGA----TTCTTCGGAAAAC--AT-TTTTGTAATTTCCAATTTTTACCT-TTT-T-GAGGACCCTCTGGAC----TAAGTCA-CGG---CTAG--A-TTTCT-TGAATCTGCCAACCaataaatgaagttattctcagtatagtgtataatatgtaactataggccttgttttacagatctcatggctagatttttatatgtcaaccaataaatgaagttattatcagtatagtgtctaatatgtaacaat
gi|113587 : ttaatacttatcTTTTTGCCAAATATGAACAAATCT-GACATACCAG----TTCTTAAGAAAAC-AGT-TTTTGTAATTCGCAATTTTTACCC-TTT-T-GTGGCCCCTCCAGACaatacatgaagttattctcagtatagtgtataatatgtaactataggccttgttttacaggtatcatggctagatttttatatgtcaaccaataaatgaagttattatcagtttagtgtctaatatgtaagaat
gi|113588 : atacTTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113589 : tatTTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAT-GAT-TTTAGTAATTCCCAATTTTAACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113590 : tatTTTATGCCAAATATGAACAAATCT-GACATACCAG----TTCTTAAGAAAAT-GAT-TTTAGTAATTCCCAATTTGTACCC-TTT-T-GGGGCCCTTCCTGACCCCTTAAGACAGTGGAACTTAGTCA-TTTTTACAAATCTG--AACC
gi|113592 : tatTTTATGCCAAATATGAACAAATCT-GACTTACCCA----TTCTTAAGAAAAC-AAT-TTTTGGAATTCTCAATTTTTACCA-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCCAGTCA-TTTTTAGAAATCTG--AACC
gi|113599 : ataTTTATATCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-AAA-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCGCTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
gi|113600 : TTTA-GCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAT-GAT-TTTTGTAATTCCCAATTTTTACCC-TTT-T-GAGGTCCCTCCTGAC
gi|113601 : tTTTACGCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAT-GAT-TTTTGTAATTCCCAATTTTTACCA-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCCAGTTT-TTTTTACAAATCTG--AACC
gi|113602 : TTTATGCCAAATATGAACAAATCT-GACATGCCG-----TTCTTAAGAAAAC-AGT-TTT-GTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113603 : TTTATGCCAAATATGAACAAATCT-GACATACCAG----TTCTTAAGAAAAC-GAT-TTTTGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTC
gi|113606 : TTTATGCCAAATATGAACAAATCT-GACATACGGA----TTCTTAAGAAAGC-GAT-TTTTGTAATTCCTAATTTTTACCC-TTT-T-GGGG-CCCTCCTGACCCCTTAAGACGAC-GAATCCAGTCA-TTTTTACAAATCTG--AACC
gi|113607 : TTTATGCCAAATATGAACAAATCT-AACATACCGG----TTCTTAAGAAAAC-GAT-TTTAGTAATTCCCAATTTTTACCA-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
gi|113608 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113609 : TTTATGCCAAATATGAACAAATCT-GACATAACGG----TTCTTAAGAAAAC-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113610 : TTTACACCAAATATGAAAATATCT-GACATACTGG----TTCTTAAGAAAAC-GAT-TTTTGTAATTCCCAATTTTTACCT-TTT-T-GGGGCCCCTCCTGACCCTTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
gi|113611 : TTTATGCCAAATATGAACAAATCT-GACATACCAG----CTCCTAAGAAAAC-GAT-TTTTGTAATTCCAAATTTTTACCC-TTT-T-GAGGCCCCTCCTGAC
gi|113612 : TTTATGCCAAATATGAACAAATCT-GACATACCAG----TTCTTAAATAAAC-AGT-TTTTGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCCCTTA----AGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
gi|113613 : TTTATACCAAATATGAACAAATCT-AACATACCGG----TTCTTAAGAAAAC-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCCCGTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
gi|113615 : TTTATGCCAAATATAAACAAATCT-GAAATACCGG----TTCTTAAGAAAAC-GAT-TTTTGTAATTCCCAATTTTTACCC-TTT-T-AGGGCCCCTCCTGAC
gi|113616 : TTTATGCAAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAA-TTTTGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCAAGTCA-TTTTTACAAATCTG--AACC
gi|113617 : TTTATGCCAAACACGAACAAATTT-GACATACCAG----TTCTTCAGAAAAC-ATT-TTTAGTAATTCTCAATTTTTGCCC-TTT-T-GGGGCCCCTCCTGAACCCTTAAGACAGTGGAAACTAGTCA--TTTTACAAAACTG--AACC
gi|113619 : TTTATGCAAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-AA--TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113623 : TTTATGCCAAATATGAACAAATCT-GACCTACCGG----TTCTTAAGAAAAC-GAT-TTTAGCAATTCCCAATTTTTACCC-CTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGATCCCAGTCA--TTTTACTAATCTG--AACC
gi|113624 : TTTATGCCAAATATGAACAAGTCT-GACATACCGG----TTCTTAAGAAAAC-GAT-TTTAGTAATTACCAGTTTTTACCC-TTT-T-GATGCCCCTCCTGACCCCTTAAGACAATGGAACCCAGTCA-TTTTTACAAATCTG--AACC
gi|113626 : TTTATGCCAAATATGAACAAATCT-GGCATACCGG----TTCCTAAGAAAAC-GAT-TTTTGTAATTCCCAATTTTTACCC-TTT-T-TGGGCCCCTCCTAACCCTTTAAGACAGTGGAACCAAGTCA-TTTTTATAAATCTG--AACC
gi|113627 : TTTATGCCGAACATGAACAAATTT-GACTTACCGG----TTCTTAAGAAAAA-GAT-TTTTGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113628 : TTTATGCCAAAAATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAT-TTTTGTAA-TCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113629 : TTTATGCTAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTACTG
gi|113630 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAT-TTTAGCAATTCCCAATTTTCACCC-TTT-T-GGGGCCCCTTCTGACCCCTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
gi|113631 : TTTATGCCAAATATGAACAAATCT-GACATAACGG----TTCTTAAGAAAAG-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCTTCCTGACCCCTTAAGACAGTGGAACCCAGTCATTTTTTACAAATCTG--AACC
gi|113632 : TTTATGCCAAATATGAACAAATCT-GACATAACGG----TTCTTAAGAAAAG-GAT-TTTTGTAATTCCGAATTTTTACCC-TTT-T-GGGG-CCCTCCTGAC
gi|113633 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-CAA-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTTCTGACACCTTAAGACAGTGG-----AGTCA-TTTTTACAAATCTG--
gi|113636 : TTTATGCCAAATATGAACAAATCT-GACATACTGG----TTCTTAAGAAAAT-GAT-TTTCATAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113639 : TTTATACCAAATATGAACAATTCT-AACATACCGG----TTCTTAAGAAAAC-AAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGA----TTAGAACAGT
gi|113640 : TTTATGCAAAATATGAACAAATCT-GACATACCGG----TTGTTAAGAAAAC-ACA-TTTAGTAATTCCCAATTTTTACCT-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACCttgtctccaggacctgcaacaatgccaata
gi|113642 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCCCCATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113643 : TTTATGCCAAATATGAACAAATTT-GACTGACTGA----TTCTTAAGAGAAA-GAT-TTTTGAAATTCCCAATTTTTACCA-TTT-T-GAGGCCCCTC
gi|113644 : TTTATGCCAAATATGAACAAATAT-GACCTACCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCCAAATTTTTACCC-TTT-T-GGGGCCACTCCTGAC
gi|113645 : TTTATGCAAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAA-TTTAGTAATTCCGAATTTTTACCC-TTT-T-GAGGCCCCTCCTGAC
gi|113646 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAT-TTTAGTAATTCTGAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACC
gi|113647 : TTTATGCCAAATATGAACAAATCT-GACATACTGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCTGAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCCATTGA-TTTTATCAAATCTG--AACCa
gi|113649 : TTTATGCCATATATGAACAAATCT-GACA--CCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCTGAATTTTTACCC-TTT-T-GGGGGCCCTCCTGAC
gi|113650 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCTGAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113651 : TTTATGCCAAATATGAACAAATTT-GACAGACCGG----TTCTTCGGAAAAC-AAT-TTTTGTAATT-CCGATTATTACCC-TTT-T-GGTGCCCATCCTGAC
gi|113653 : TTTATGCCAAATATGAACAAATCT-GATATACCGG----TTCTCAAGAAAGC-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113654 : TTTATGCCAAATATAAACAAATCT-GACATACCGG----TTCTTAAAAAAAA-GAT-TTTTGTAATTCCCAATTTTTACCC-TTT-T-GGGGCTCCTCCTGAC
gi|113656 : TTTATACCAAATATGAACAAATCT-GACATACCGG----TTCTCAAGAAAAT-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113657 : TTTATGCAAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAA-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCCAGTAA-TTTTTACAAATCTG--
gi|113658 : TTTATGCAAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAA-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113659 : TTTATGCCAAATATGAACACATCT-GCCTTACCGG----TTCTTAAGAAAAC--AT-TTTT-TAATTCCTAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113660 : TTTATGCAAAATATGAACAAATCT-GAAATACCGG----TTCTTAAGAAAAC-GAA-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAACCCAGTAA-TTTTTACAAATCTG--AACC
gi|113661 : TTTATGCCAAATATGAACAAATTT-GACTGACTGA----TTCTTAAGAGAAA-TAT-TTTTGAAATTCCCAGTTTTTACCC-TTT-T-TGGGCCCCTCCTGAC
gi|113662 : TTTATGCCAAATATGAACAAATCT-GACATACCAG----TTCTTAAGAAAAT-GAT-TTTTGTAACTCCAAATTTTTACCC-TTT-TGGGGGCCCCTCCTGAC
gi|113663 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATCCTCAATTTTTACCC-TTT-T-GGGACCCCTCCTGAC
gi|113664 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTCAAG-AAAC-GAT-TTTAGTAATTCTCAATTTTTACCC-TTT-T--GGGCCCCTCCTGAC
gi|113665 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCCCCATTTTTACCC-TTT-T-TGGGCCCCTCCTGAC
gi|113666 : TTTATGCAAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAA-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGAGCCCCTCCTGAC
gi|113668 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAT-TTTAGTTATTCACAATTTTTACCC-TTT-T-GGGGCCCCTC
gi|113669 : TTTATGCAAAATATGAACAAATCT-GAAATACCGG----TTGTTAAGAAAAC-GAA-TTTTGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGGCCCCTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--
gi|113672 : TTTATGCCAAATATGAACAAATCT-GACATACCAG----TTCTTAAGAAAAC-AAA-TTTAGTAATTCCCAATTTTTACCCTTTT-T-GGAGCCCCTCCTGAC
gi|113673 : TTTATGCCAAATACGAACACATCT-GACAAACCGG----TTCTTAAGAAAAC-GAT-TTT-GTAATTTCCCATTGTTACCA-TTT-T-GGGGCCCCTCCTGACCCATTAAGACAGTGGATCCCAGTCA-TTTTTACAAATCTG--
gi|113674 : TTTATGCCAAATATGAACAAATCT-GACATACCTG----TTCTTAAGAAAAC-AGT-TTTTGCAATTCCCAATTTTTACCC-TTT-T-GGCGCCCC
gi|113676 : TTTATGCAAAATATGAACAAATCT-GACATACCAG----TTCTTAAGAAAAC-GAA-TTTAGTAATTCCCAATTTTTACCC-TTT-T--GGGCCCCTCCTGACCCTTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACCct
gi|113677 : TTTATGCAAAATATGAACAAATCT-GACATACCAG----TTCTTAAGAAAAC-GAA-TTTAGTAATTCCCAATTTTTACCC-TTT-T--GGGCCCCTCCTGACCCTTTAAGACAGTGGAACCCAGTCA-TTTTTACAAATCTG--AACC
gi|113678 : TTTATGCTAAATATGAACAAATCTTGACATACTGG----TTCTTAAGAAAAC-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCTCTCCTGAC
gi|113679 : TTTATGCAAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC--ATATTTAGTAATTCCCCATTTTTACCC-TTT-T-GGGGCCACTCCTGAC
gi|113680 : TTTATGCCAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAT-TTTAGTAATTCCCAAATTTTACCC--TT-T-GGAGCCCCTCCTGAC
gi|113681 : TTTATGCAAAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-GAA-TTTAGTAATTCCCAATTTGTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113683 : TTTATGCCAAATATGAAAAAATTT-GACAAACCGG----TTCTTAAGAAAAC-AGT-TTTTGTAATTCCCAATTTTT-CCT-TTTAT-GGGGCTCCTC
gi|113685 : TTTATGCCAAATATGAACAAATCT-GACTTACCGGCCGGTTCTTAAGAAAAC-AAT-TTTTGTAATTCCTAATTTTTACCCATTT-T-GGGGCCTTTC
gi|113686 : TTTATGCCAGTTATGAACTAATCT-GACATACCAG----TTCTTAAGAAAAT-ATT-TTTTGTAATTCCCAATTTTTACCC-TTT-T-GGTGCCCCTCCTGACCCCTTAAGACAATGGAACCCAGTCATTTTTTTCAAATCTG--AACCtg
gi|113687 : TTTATGGCAAATATGAACAAATCT-GACATACCGT----TTTTTAAGAAAAC-GAT-TATGGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113689 : TTTATGCCAAATATGAACAAATTT-GACTGACTAT----TTCTTTAGAGAAA-GAT-TTTTGAAATTCCCAATTTTTATCC-TTT-T-GGGGCCCCTCCTGAC
gi|113787 : TTAATGCCAAATATGAACAAATCT-GACATACCAG----TTCTTTAGAAAAC-GAT-TTTTGTAATTCCCAATTTTTACCT-TTT-T-GGGGCCCCTCCTGAC
gi|113789 : TTAATGCCAAATATGAACAAATCT-GACATACCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113790 : TTATGCCAAATATGAACAAATAC-GACATACCAG----TTCTTAAAAAAAAAGAT-TTTTGTAATTCCCAATTTTTACCC-TTT-T-GGTGCCCCTCATGACCCCTTAAGACAGTGGAACCCAGTCATTTTTTACAAATCTG--
gi|113797 : GCCAAATATGAACAAATTT-GACTGACAAG----TTCTTAAGAAAAT-GAT-TTTTGTAATTCCCTATTTTTACCC-TTT-T-GGGGCCCCTC
gi|113799 : aGCCAAATATGAACAAATCT-GACATACCGG----TTCTCAAGAAAAC-GAT-TTTAGTAATTCCCAACTGTTACCC-TTT-T-GGGGCCCCTCCTGAC
gi|113818 : AAATATGAACAAATCT-GACATACCGG----TTCTTAAGAAAAC-AAA-CTTAGTAATTCCCAATTTTTACCC-TTT-T-GGGGCCCCTCCTGACCCCTTAAGACAGTGGAA-CCAGTCA-TTTTTACAAATCTG--AACC
17 sequences could not be aligned to this reference sequence:
Unaligned ( gi|113853 ): TCACGGCTAGATTTCTATATATATGTCAATCAATAAATGAAGATATTCTCAGTATAGTGTCTAGTATTTAACTATAGGCCCTGTCTAATACAGATCTCATGGCTAGATTTCTATATGTCAACCAATAAATGAAGATATTCTCAGTATAGTGTCTAATATTT
Unaligned ( gi|113855 ): TCACGGCTAGATTTCTATATATATGTCAATCAATAAATGAAGATATTCTCAGTATAGTGTCTAGTATTTAACTATAGGCCCTGTCTAATACAGATCTCATGGCTAGATTTCTATATGTCAACCAATAAATGAAGATATTCTCAGTATAGTGTCTAATATTT
Unaligned ( gi|113851 ): TTACGGCTAGATTTCTATATATATGTCAATCAATAAATGAAGATATTCTCAGTATAGTGTCTAGTATTTAACTATAGGCCCTGTCTAATACAGATCTCATGGCTAGATTTCTATATGTCAACCAATAAATGAAGATATTCTCAGTATAGTGTCTAATATTTTAC
Unaligned ( gi|113854 ): TCATGGCTAGATTTTTATATGTCAACCAATAAATGAAGTTATTATCAGTATAGTGTCTAATATGTAACAATAGACCCTGTCTTATAGATCTCACGGCTAGATTTCTATATATATGTCAATCAATAAATGAAGATATTCTCAGTATAGTGTCTAGTATTTAACTAT
Unaligned ( gi|113852 ): TCATGGCTAGATTTTTATATGTCAACCAATAAATGAAGTTATTATCAGTATAGTGTCTAATATGTAACAATAGACCCTGTCTTATAGATCTTACGGCTAGATTTCTATATATATGTCAATCAATAAATGAAGATATTCTCAGTATAGTGTCTAGTATTTAACTAT
Unaligned ( gi|113857 ): TCACGGCTAGGTTTCTTGAATCTGTGAACCAATTAATGAAGATATTCTCAGTGTAGTGTCTAATATGTAATTATAGGTCCTGTCTTACAGATCTCATGGCTCGATTTCTTGAATCTGCAAACCAATAAATGAAGATATTCTCAGTGCAGTGTCTAATATGTA
Unaligned ( gi|113858 ): TCATGGCTAGATTTCTTCAATCTGTCAACCAATAAATGAAGATATTCTCAGTGTAGTGTCTAATATGTAACTATAGGCCCTGTCTTACAGATCTCACGGCTAGATTTCTTGAATCTGTGAACCATTTAATGATATTCTCAGTATAGTATCTAAT
Unaligned ( gi|113856 ): TCATGGCTAGATTTTTATATGTCAACCAATAAATGAAGTTATTATCAGTTTAGTGTCTAATATGTAAGAATAGACCCTGTCTTATAGATCTCACGGCTAGATTTCTATATATATGTCAATCAATAAATGAAGATATTCTCAGTATAGTGTCTAGTATTTAACTAT
Unaligned ( gi|113848 ): TCATGGCTAGATTTTTATATGTCAACCAATAAATTAAGTTATTATCAGTATAGTGTCTAATATGTAACAATAGACCCAGTCTTACAGATCTCACGGCTAGATTTCTATATATATGTCAATCAATAAATGAAGATATTCTCAGTATAGTGTCTAGTATTT
Unaligned ( gi|113859 ): TCATGACTAGATTTCTTCAATCTGCAAACCAATAAATGAAGATATTCTCAATGCAGTGTGTATATTTAGGCCTTGTCTTACAGATCTCATGGCTAGATTTCTTCAATCTGTCAACCAATAAATGAAGATATTCTCAGTGTAGTGTCTAATATGTAACTAT
Unaligned ( gi|113860 ): TCATGGCTCGATTTCTTGAATCTGCAAACCAATAAATGAAGATATTCTCAGTGCAGTGTCTAATATGTATATTTAGGCCTTGTCTTACAGATCTCATGGCTACATTTCTTCAATCTGTCAACCATTTAATGATATTCTCAGTATAGTATCTAATTTGTAACTAT
Unaligned ( gi|113845 ): GAAGATATTCTCAGTGTAGTGTCTAATATGTAACTATAGGCCCTGTCTTACAGATCTCACGGCTAGATTTCTTGAATCTGTGAACCATTTAATGATATTCTCAGTATAGTATCTAATTTGTCGCTATAGGCCTTGTCTTACAGATCTCACGGCTAGGTTTCTTGAATCTGTGAACCAATTAATGAAGATATTCTCAGTGTAGTGTCTAATATGTAA
Unaligned ( gi|113861 ): TCATGGCTACATTTCTTCAATCTGTCAACCATTTAATGATATTCTCAGTATAGTATCTAATTTGTAACTATAGGCCTTTTCTTACAGATCTCACGGCTAGATTTCTTGAATCTGTGAACCAATTAATGAAGATATTCTCAGTGTTTTGTCTAATATTTAACTAT
Unaligned ( gi|113862 ): TCACGGCTAGATTTCTTGAATCTGTGAACCAATTAATGAAGATATTCTCAGTGTTTTGTCTAATATTTAACTATAGGCCCTGTCTTACAGATCTCATGGCTACATTTCTTCAATCTGCCAACCAATAAAAGATATTTTCAGTGGATATGGTTAATA
Unaligned ( gi|113863 ): TCACGGCTAGATTTCTTCAATCAGCCCACCAATAAATGAAGATATTCTCAGCATATTGTCTATTATTTAACTATAGGCCCTGTCTTACAGATCTCACGGCTAGATTTCT
Unaligned ( gi|113884 ): TATTTAACTATAGGCCCTGTCTAATACAGATCTCATGGCTAGATTTCTATATGTCAACCAATAAATGAAGACATTCTCAGTATAGTGTCTAATATTTTAC
Unaligned ( gi|113885 ): TATTTAACTATAGGCCCTGTCTTACAGATCTCACGGCTAGATTTCTTCAATCAGCCCACCAATAAATGAAGATATTCTCAGCATATTGTCTATTATTTAACTAT