lowQualScore : 111
lowQualScore : 0 1 0 1 44 0 222 666 0 0 11 2 55555 0 00 222222 1 1 222 11 0
lowQualScore : . . . . .. . ... ... . . .. . ..... . .. ...... . . ... .. .
lowQualScore : 7 4 7 3 11 6 777 111 6 6 77 5 77777 6 99 444444 2 2 444 66 7
consensus : ATA-A-GT-TG-AAA--T-T-A-A-A-CC-AA-G--ATA-T--G-AC-AT--CAT------AAA-TG-TTT---GAAG-G-TGTGATAT
Reference ( gi|34 ) : ATA-A-GT-TG-AAA--T-T-G-A-C-CC-AA-G--ATA-T--G-GC-AT--CAT------AAA-TG-TTT---GAAG-G-TGTGATAT
gi|58 : ATACA-GT-TG-AAA--T-T-G-A-A-GC-AA-G--ATA-T--G-AC-AT--C---------AA-TG-TTT---GAAG-G-TGTGATA
gi|43 : ATA-A-GT-TG-AAA--C-T-A-AAC-CC-AA-G--ATA-T--G-AC-------C------AAA-TG-TTT---GAAG-A-TGTg
gi|22 : TA-A-GT-TG-AAA--T-T-A-A-A-CC-AA-T--ATA-T--G-AC-AT--CAT------AAA-TG-TTT---GAAG-G-TGTGATAtagtaaa
gi|44 : cTA-A-GT-TA-AAA--C-T-A-A-A-CC-AA-G--ATA-T--G-GC-AT--CAT------AAA-TG-TTT---GACG-G-TGTGATAgcg
gi|23 : cTA-A-GT-TG-AAA--T-T-G-A-A-CC-AC-G--ATA-T--G-CT-AT--CAT------AAA-TG-TTT---GAAG-G-TATGATA
gi|17 : cTA-A-GT-TG-CA---T-T-G-A-A-CC-AA-G--ATA-TATG-GC-AT--CAT------AAA-TG-TTT---GAAG-G-TGTGATAgcg
gi|12 : cTA-A-GT-TG-AAA--T-T-G-A-A-TC-AG-G--ATA-T--A-GC-AT--CAT------AAA-TG-TAT---GAAG-G-TATGATAgtg
gi|13 : tcTA-A-GT-TG-AAAA-T-T-G-A-A-CC-AA-G--ATA-T--G-GC-AT--CAT------AAA-TG-AAT---GAAG-G-TATGATAgcga
gi|1 : tcTA-A-GT-TG-AAAA-T-T-G-A-A-CC-AA-G--ATA-T--G-GC-AT--CAT------AAA-TG-AAT---GAAG-G-TATGATAgcg
gi|47 : tcTA-A-GT-T--AAA--T-T-G-A-A-CC-AA-G--ATA-T--G-AT-AT--CAT------AAA-TG-TTT---GAAG-G-T-TGATAgcgaatg
gi|26 : cTA-A-GT-TG-AAA--C-T-A-AAC-CC-AA-G--ATA-T--G-AC-AT--CGC------AAA-TG-TTT---GAAG-G-TGTgc
gi|45 : cTA-A-GT-TG-AAA--T-T-A-A-G-C--AA-G--ATA-T--G--C-AT--CAT------AAA-TG-TTT---GAAG-G-TATGATAtagta
gi|24 : TA-A-GT-TG-AAA--T-T-A-A-A-GC-AA-G--ACA-T--G-CC-AT--TAT------AAA-TG-TTT---GAAG-G-TGCGATAgcg
gi|10 : cTA-A-GT-TG-AAA--AAT-G-A-A-CC-AA-G--ATA-T--G-GC-AT--CAT------AAA-TG-TTT---GAAGTG-TGT-ATAgca
gi|21 : cTA-ACGT-TG-AAA--T-TTG-A-A-CC-AA-G--ATA-T--G-GC-AT--CAT-------AA-TG-TTT---GAAG-GTTGTGATgcga
gi|25 : cTA-A-GT-TG-ATA--T-C-A-A-A-CC-AA-G--ATA-A--G-AC-AT--CAT------AAA-TA-TTT---GAAG-G-TGTGATAcat
gi|19 : tTA-A-GT-TG-ATA--T-C-A-A-A-CC-AA-G--ATA-A--G-AC-AT--CAT------AAA-TA-TTT---GAAG-G-TGTGATAgca
gi|6 : tTA-A-GT-TG-AAA--T-T-G-A-A-CC-AA-G--AAA-TT-G-GCCAT--CAT------AAA-TG-TAT---GAAG-G-TATGATAgcaa
gi|36 : cTA-A-GT-TG-AAA--C-T-G-A-A-CC-AA-G--ATA------GC-AT--CA-------AAA-TGTTTT---GAAG-G-TGTGATAgcga
gi|57 : cTA-A-GT-TG-AAA--C-T-A-AAC-CC-AA-G--ATA-T--G-AC-AT--CGC------AAA-TG-TTT---GAAG-G-Tgcg
gi|18 : cTA-A-GT-TG-AAA--G-T-G-A-A-C--AA-G--ATA-T--GAGC-AT--CTT------AAA-TG-TTT---GAGG-G-TGTGATAttag
gi|56 : tcTA-G-GT-GA-AAA--C-T-A-A-A-CC-AA-G--ATA-T--T-AC-AT--CAT------GAA-TG-TTT---GAAG-G-TGTGATAgcg
gi|27 : TA-G-GT-CG-AAA--T-T-A-A-T-C--AA-G--ATA-T--G-AC-AT--CAT------AAA-TA-TTT---GAAA-G-TGTGACA
gi|62 : cTA-A-GT-TG-AAA--C-T-A-A-A-CC-AA-G--ATA-T--G-AC-AT--CGC------AAA-TG-TTT---GAA--G-TGTgta
gi|53 : cTA-A-GT-TG-AAA--C-T-A-A-A-CC-AA-G--ATA-T--G-AC-GT--CAT------AAT-TG-TTT---GAA--G-TGT-ATAtt
gi|15 : TA-A-GT-TG-AAA--T-TTG-A-A-CC-AA-G--ATA-TG-G-GC-AT--CAT------AAA-TG--AT---GAA--G-TATGATAgg
gi|14 : tcTA-A-GT-TG-AAA--T-TTG-A-A-CC-AA-G--ATA-TG-G-GC-AT--CAT------AAA-TG--AT---GAA--G-TATGATAgcga
gi|35 : tcTA-A-GT-TA-AAA--C-T-A-AAC-CC-AA-G---TA-T--C-AC-AT--CGT------AAA-TG-TTT---GAAG-G-TGTgcga
gi|65 : TA-G-GT-TG-AAA--T-T-A-A-A-GC-AA-G--ATA-T--G-CC-AT--CAT------TAA-TG-TTT---GAAG-ttaagt
gi|20 : tcTA-ATGT-TG-AAA--T-T-G-A-A-GC-AAAG--ATA------GC-AT--CAT------AAA-TG-TTT---GAA--G-TATGATA
gi|32 : tcTA-G-GT-TG-AA---T-T-G-A-A-GC-CA-G--ATA-T--G-AC-AT--CAT-------AA-TG--TT---GAAG-G-TGTGATAgact
gi|38 : ctTA-G-GT-AG-AAA--C-T-A-A-A-CC-AA-G--ATA-T--T-AC-AT--CAT------AAA-TG-TTT---GAAT-G-TGGGACAgcga
gi|28 : TA-G-GT-CG-AAC--A-T-A-A-T-TC-AA-G--ATG-T--G-AC-AT--CCT------AAA-TG-TTA---GAAG-G-TGTGATAgt
gi|49 : tcTA-A-GT-TG-AAA--T-T-G-A---AG-AA-G--ATA-T--G-GC-AT---AT------AAA-T--TTT---GAA--G-TATGATAg
gi|46 : cTA-G-GT-GG-AAA--C-T-A-AAC-CC-AA-G--ATA-C--T-AT-AT--CAT------AAA-TG-TTT---GAAT-G-TGgaga
gi|16 : cTA-G-GT-TG-ATA--T-C-A-A-A-CG-AA-G--GTA-A--G-AC-AT--CAT------AAA-TA-TTT---GCAG-A-TGTGATAgaac
gi|59 : tcTA-A-GTGTG-AAA--T-T-G-A-AACC-AA----ATACT--G-GC-AT--CAT-------AA-TT-TTT---GAAG-gcaa
gi|11 : TA-A-GT-TA-AAAACT-A-A-A-C-CC-AA-A--ATA-T--C-AT-AT--CGT------AAA-TG-TTTTTGGAAG-T-TGTacattga
gi|68 : TA-G-GT-GA-AAA--C-T-A-A-A-CC-AA-G--ATA-T--T-GC-AT--AAT------AAA-TG-TTttgat
gi|50 : gTA-A-GT-TG-AAAA-C-T-G-A-C----AA-G--AT--T--G-AT-AT------------AA-TG-TGT---GAAG-G-TGTGATA
gi|67 : tcTA-A-GT-TG-AAT--T-T-G-A-A-CC-A---------T--G-------------------A-TG-TTT---GAAG-G-TGTGATAgcgaa
gi|70 : cTA-G-GT-GA-AAA--C-T-A-A-A-AC-AA-G--ATA-T--T-AC-AT--CAT------AAA-TG-Tgc
gi|42 : A-A-GT-TG-AAA--C-T-A-AAC-CC-AA-A--ATA-T--G-AC-AT--CGT------AAA-TG-TTT---GAAG-G-TGT
gi|31 : A-A-GT-TGGAAA--T-T-GGA-A-CC-AA-G--ATA-T--G-AT-AT--CAT------TAA-TG-TTT---GAAG-G-TGTGAtagta
gi|30 : cA-A-GT-TGGAAA--T-T-GGA-A-CC-AA-G--ATA-T--G-AT-AT--CAT------TAA-TG-TTT---GAAG-G-TGTGAagc
gi|48 : cA-G-GT-GA-AAA--C-T-A-A-A-CC-AA-G--ATA-T--T-GC-AT--AAT------AAA-TG-TTT---GAAG-A-TGTGATAagc
gi|3 : A-A-GT-TG-AAA--C-T-A-A-AACC-AA-G--ATT-T--G-AC-AT--GGT------AAAATG-TTT---GAAG-A-TGTgt
gi|7 : ctaA-G-GT-GG-AAA--C-T-A-A-A-CC-AA-G--ATA-T--T-AC-AT--CATAAATCTAAA-TG-TTT---GAAT-G-TGGGACAtagtaaaa
gi|66 : A-A-GT-TG-ATA--T-T-A-A-A-CC-AA-G--ATA-T----------------------------TT---GAAG-G-TGTGATAgt
gi|55 : c-A-GT-TG-AAA--T-T-A-AAC-TC-AA-G--ATA-T--G-AC-AT--CGT------AAA-TG-TTT---GAAG-G-TGTgcaa
gi|40 : -A-GT-TG-AAC--A-T-G-A-A-CC-AA-G--ATA----G-GT-AT--CAT------AAA-TG-TTT---GAA--G-TGTGATAtagta
gi|60 : ct-A-GG-TG-AAA--T-T-G-A-A-GC-AA-G--ATA-T--G-AC-AT--TAT------AAA-TG-TTT---GAA--G-TGT-ATAagca
gi|41 : -A-GT-GG-AAA--C-C-A-A-A-CC-AA-G--ATA-T--T-AC-ATAGCAT------AAA-TG-TTT---GAAT-G-TGGGACATgcg
gi|69 : t-A-GT-TG-AAT--C-T-A-AAC-TC-AA-G--ATA-T--G-AC-AT--CGT------AAA-TG-TTT---
gi|37 : -GT-TA-AAA--C-T-A-AAC-CC-AA-G--ATA-T--C-AC-A---CGT------AAA--G-TTT---GAAG-G-TGT
gi|39 : t-GT-TA-AAA--C-T-A-A-C-CCCAA-G--ATA-T--C-AC-AT--CGT------AAA-T--TTT---TAAA-G-TGTttaagtaaa
gi|29 : -GT-TA-AAC--T-A-A-A-C-CC-AA-G--ATA-T--C-AC-AT--CGT------AAA-T--TTT---GAAtttaagtaa
gi|5 : aatG-AAAC-T-T-A-A-A-CC-AA-GGAATAAT--T-AC-AT--CAT------AAA-TG-TTTG--GAAT-G-TGGGACAatgtttaagtaaa
gi|4 : taggtgtgaG-AAAC-T-T-A-A-A-CC-AA-GGAATAAT--T-AC-AT--CAT------AAA-TG-TTTG--GAAT-G-TGGGACA
gi|54 : taggtgtga-AAA--C-T-A-A-A-CC-AA-G--ATA-T--T-AC-AT--CAT------AAA-TG-TTT---GAAT-G-TG-GATA
gi|61 : taggtatAA--T-T-G-A-A-GC-AT-G---TA-T--G-AC-AT----T------AAA-TG-TTT---GAAG-G-TGTGATAg
gi|63 : aggtgAA--C-T-A-A-A-TC-AA-G--ATT-T--T-AC-AT--TAT------AAAATG-TTT---GAAT-G-TG-GATAgcgat
gi|64 : at-A-C-CC-AA-G--ATAAT--C-AC-AT--CGT------AAA-TG-TTG---GAAG-G-Tgta
gi|33 : aactaa-A-C-CC-AA-G--ATA-T--T-AC-AT--CATA-----AAA-TGTTTT---GAAT-G-TGttaagtaa
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|2 ): ATAAGTTTTAAAGAACTAAACCCAAAATCACATCGTAAATTTTTGAAAGTTGTTTAAGTAA
Unaligned ( gi|8 ): CTAGTTAAAAACTAAACTCAAGGAAGATATATATAAATGTTTGAAGTTGATAGTAAAAT
Unaligned ( gi|9 ): CTAGTTAAAAACTAAACTCAAGGAAGATATATATAAATGTTTGAAGTTGATAGTAAAAT
Unaligned ( gi|51 ): CTAGGTAGAAACTAAATCAAGATCTTATATTATATTGTTTGATTGTGGGATTT
Unaligned ( gi|52 ): GTTAGAAACTAAATCAAGAATCTTAATTATAAATGTCTTGAAGTGGGGGATAT
Alignments
lowQualScore : 0 1 0 1 3 0 2 1 1 1 6 0 11 2 22 0 00 111111 1 0 1 222 1 0
lowQualScore : . . . . . . . . . . . . .. . .. . .. ...... . . . ... . .
lowQualScore : 7 4 7 3 7 6 5 2 2 2 2 6 77 5 99 6 88 888888 2 6 2 444 6 7
consensus : ATA-A-GT-TG-AAA-C-T-A-AA-C-C-AA-G--ATA-T--GA-CAT--CA------T-AAA-TG-TTT---GAAGG-TGTGATAT
Reference ( family-2074 ) : ATA-A-GT-TG-AAA-T-T-A-AA-C-C-AA-G--ATA-T--GA-CAT--CA------T-AAA-TG-TTT---GAAGG-TGTGATAT
gi|1 : TA-A-GT-TG-AAAAT-T-G-AA-C-C-AA-G--ATA-T--GG-CAT--CA------T-AAA-TG-AAT---GAAGG-TATGATA
gi|10 : tcTA-A-GT-TG-AAA-AAT-G-AA-C-C-AA-G--ATA-T--GG-CAT--CA------T-AAA-TG-TTT---GAA-G-TGTG-TATgcgaatg
gi|11 : cTA-A-GT-TA-AAAAC-T-A-AA-C-CCAA-A--ATA-T--CA-TAT--CG------T-AAA-TG-TTTTTGGAAGT-TGTagcga
gi|12 : TA-A-GT-TG-AAA-T-T-G-AA-T-C-AG-G--ATA-T--AG-CAT--CA------T-AAA-TG-TAT---GAAGG-TATGATAttgat
gi|13 : tcTA-A-GT-TG-AAAAT-T-G-AA-C-C-AA-G--ATA-T--GG-CAT--CA------T-AAA-TG-AAT---GAAGG-TATGATAgcga
gi|14 : tcTA-A-GT-TG-AAA-T-TTG-AA-C-C-AA-G--ATA-TG-GG-CAT--CA------T-AAA-TG--AT---GAA-G-TATGATAgcg
gi|15 : tcTA-A-GT-TG-AAA-T-TTG-AA-C-C-AA-G--ATA-TG-GG-CAT--CA------T-AAA-TG--AT---GAA-G-TATGATAgcga
gi|16 : tcTA-G-GT-TG-ATA-T-C-A-AA-C-G-AA-G--GTA-A--GA-CAT--CA------T-AAA-TA-TTT---GCAGA-TGTGATAgcga
gi|17 : tcTA-A-GT-TG-CA--T-T-G-AA-C-C-AA-G--ATA-TATGG-CAT--CA------T-AAA-TG-TTT---GAAGG-TGTGATAgcaa
gi|18 : cTA-A-GT-TG-AAA-G-T-G-AA-C---AA-G--ATA-T--GAGCAT--CT------T-AAA-TG-TTT---GAGGG-TGTGATAgtg
gi|19 : tcTA-A-GT-TG-ATA-T-C-A-AA-C-C-AA-G--ATA-A--GA-CAT--CA------T-AAA-TA-TTT---GAAGG-TGTGATAgcg
gi|20 : tTA-ATGT-TG-AAA-T-T-G-AA-G-C-AAAG--ATA-----G-CAT--CA------T-AAA-TG-TTT---GAA-G-TATGATAgcaa
gi|21 : tcTA-ACGT-TG-AAA-T-TTG-AA-C-C-AA-G--ATA-T--GG-CAT--CA------T--AA-TG-TTT---GAAGGTTGTGATgact
gi|22 : cTA-A-GT-TG-AAA-T-T-A-AA-C-C-AA-T--ATA-T--GA-CAT--CA------T-AAA-TG-TTT---GAAGG-TGTGATAcat
gi|23 : cTA-A-GT-TG-AAA-T-T-G-AA-C-C-AC-G--ATA-T--GC-TAT--CA------T-AAA-TG-TTT---GAAGG-TATGATAgcg
gi|24 : cTA-A-GT-TG-AAA-T-T-A-AA-G-C-AA-G--ACA-T--GC-CAT--TA------T-AAA-TG-TTT---GAAGG-TGCGATAgcg
gi|25 : cTA-A-GT-TG-ATA-T-C-A-AA-C-C-AA-G--ATA-A--GA-CAT--CA------T-AAA-TA-TTT---GAAGG-TGTGATAgca
gi|26 : tTA-A-GT-TG-AAA-C-T-A-AA-C-CCAA-G--ATA-T--GA-CAT--CG------C-AAA-TG-TTT---GAAGG-TGTgca
gi|27 : cTA-G-GT-CG-AAA-T-T-A-A--T-C-AA-G--ATA-T--GA-CAT--CA------T-AAA-TA-TTT---GAAAG-TGTGACAtagta
gi|28 : cTA-G-GT-CG-AAC-A-T-A-AT-T-C-AA-G--ATG-T--GA-CAT--CC------T-AAA-TG-TTA---GAAGG-TGTGATAgta
gi|29 : tc-GT-T--AAA-C-T-A-AA-C-CCAA-G--ATA-T--CA-CAT--CG------T-AAA-T--TTT---GAAg
gi|3 : aatA-A-GT-TG-AAA-C-T-A-AAAC-C-AA-G--ATT-T--GA-CAT--GG------TAAAA-TG-TTT---GAAGA-TGTatgtttaagtaaa
gi|30 : ctaA-A-GT-TGGAAA-T-T-GGAA-C-C-AA-G--ATA-T--GA-TAT--CA------T-TAA-TG-TTT---GAAGG-TGTGAtagtaaaa
gi|31 : cA-A-GT-TGGAAA-T-T-GGAA-C-C-AA-G--ATA-T--GA-TAT--CA------T-TAA-TG-TTT---GAAGG-TGTGAagc
gi|32 : cTA-G-GT-TG-AA--T-T-G-AA-G-C-CA-G--ATA-T--GA-CAT--CA------T--AA-TG--TT---GAAGG-TGTGATAagc
gi|33 : ctA-C-T-A-AA-C-CCAA-G--ATA-T--TA-CAT--CA------TAAAA-TGTTTT---GAATG-TGgcga
gi|34 : actaggtggATA-A-GT-TG-AAA-T-T-G-AC-C-C-AA-G--ATA-T--GG-CAT--CA------T-AAA-TG-TTT---GAAGG-TGTGATATggcag
gi|35 : TA-A-GT-TA-AAA-C-T-A-AA-C-C-CA-A--GTA-T--CA-CAT--CG------T-AAA-TG-TTT---GAAGG-TGT
gi|36 : TA-A-GT-TG-AAA-C-T-G-AA-C-C-AA-G--ATA-----G-CAT--CA--------AAA-TGTTTT---GAAGG-TGTGATAttaagt
gi|37 : c-GT-TA-AAA-C-T-A-AA-C-CCAA-G--ATA-T--CA-CA---CG------T-AAA--G-TTT---GAAGG-TGTgcg
gi|38 : tTA-G-GT-AG-AAA-C-T-A-AA-C-C-AA-G--ATA-T--TA-CAT--CA------T-AAA-TG-TTT---GAATG-TGGGACAttaagtaaa
gi|39 : -GT-TA-AAA-C-T-A-AC-C-CCAA-G--ATA-T--CA-CAT--CG------T-AAA-T--TTT---TAAAG-TGTgt
gi|4 : G-AAACT-T-A-AA-C-C-AA-GGAATAAT--TA-CAT--CA------T-AAA-TG-TTTG--GAATG-TGGGACAtttaagtaa
gi|40 : taggtgtga-A-GT-TG-AAC-A-T-G-AA-C-C-AA-G--ATA----GG-TAT--CA------T-AAA-TG-TTT---GAA-G-TGTGATA
gi|41 : ct-A-GT-GG-AAA-C-C-A-AA-C-C-AA-G--ATA-T--TA-CATAGCA------T-AAA-TG-TTT---GAATG-TGGGACATagca
gi|42 : tA-A-GT-TG-AAA-C-T-A-AA-C-CCAA-A--ATA-T--GA-CAT--CG------T-AAA-TG-TTT---GAAGG-TGT
gi|43 : ATA-A-GT-TG-AAA-C-T-A-AACC-C-AA-G--ATA-T--GA-C------------C-AAA-TG-TTT---GAAGA-TGTtagta
gi|44 : TA-A-GT-TA-AAA-C-T-A-AA-C-C-AA-G--ATA-T--GG-CAT--CA------T-AAA-TG-TTT---GACGG-TGTGATAtagtaaa
gi|45 : cTA-A-GT-TG-AAA-T-T-A-AG-C---AA-G--ATA-T--G--CAT--CA------T-AAA-TG-TTT---GAAGG-TATGATA
gi|46 : TA-G-GT-GG-AAA-C-T-A-AA-C-CCAA-G--ATA-C--TA-TAT--CA------T-AAA-TG-TTT---GAATG-TGgcg
gi|47 : cTA-A-GT-T--AAA-T-T-G-AA-C-C-AA-G--ATA-T--GA-TAT--CA------T-AAA-TG-TTT---GAAGG-T-TGATAgaac
gi|48 : cA-G-GT-GA-AAA-C-T-A-AA-C-C-AA-G--ATA-T--TG-CAT--AA------T-AAA-TG-TTT---GAAGA-TGTGATAgc
gi|49 : TA-A-GT-TG-AAA-T-T-G-AA---G-AA-G--ATA-T--GG-CAT---A------T-AAA-T--TTT---GAA-G-TATGATAgt
gi|5 : cG-AAACT-T-A-AA-C-C-AA-GGAATAAT--TA-CAT--CA------T-AAA-TG-TTTG--GAATG-TGGGACAgaga
gi|50 : taggtgtgaTA-A-GT-TG-AAAAC-T-G-A----C-AA-G--AT--T--GA-TAT-------------AA-TG-TGT---GAAGG-TGTGATA
gi|53 : tcTA-A-GT-TG-AAA-C-T-A-AA-C-C-AA-G--ATA-T--GA-CGT--CA------T-AAT-TG-TTT---GAA-G-TGT-ATAgcgaa
gi|54 : -AAA-C-T-A-AA-C-C-AA-G--ATA-T--TA-CAT--CA------T-AAA-TG-TTT---GAATG-TG-GATAgg
gi|55 : taggtat-A-GT-TG-AAA-T-T-A-AA-CTC-AA-G--ATA-T--GA-CAT--CG------T-AAA-TG-TTT---GAAGG-TGTg
gi|56 : TA-G-GT-GA-AAA-C-T-A-AA-C-C-AA-G--ATA-T--TA-CAT--CA------T-GAA-TG-TTT---GAAGG-TGTGATAtagta
gi|57 : TA-A-GT-TG-AAA-C-T-A-AA-C-CCAA-G--ATA-T--GA-CAT--CG------C-AAA-TG-TTT---GAAGG-T
gi|58 : cATACA-GT-TG-AAA-T-T-G-AA-G-C-AA-G--ATA-T--GA-CAT--C----------AA-TG-TTT---GAAGG-TGTGATAttag
gi|59 : TA-A-GTGTG-AAA-T-TGA-AA-C-C-AA----ATACT--GG-CAT--CA------T--AA-TT-TTT---GAAGg
gi|6 : TA-A-GT-TG-AAA-T-T-G-AA-C-C-AA-G--AAA-TTGGC-CAT--CA------T-AAA-TG-TAT---GAAGG-TATGATAacattga
gi|60 : c-A-GG-TG-AAA-T-T-G-AA-G-C-AA-G--ATA-T--GA-CAT--TA------T-AAA-TG-TTT---GAA-G-TGT-ATAgcga
gi|61 : AA-T-T-G-AA-G-C-AT-G---TA-T--GA-CAT----------T-AAA-TG-TTT---GAAGG-TGTGATAgcg
gi|62 : aggtgTA-A-GT-TG-AAA-C-T-A-AA-C-C-AA-G--ATA-T--GA-CAT--CG------C-AAA-TG-TTT---GAA-G-TGTgcgat
gi|63 : cAA-C-T-A-AA-T-C-AA-G--ATT-T--TA-CAT--TA------T-AAAATG-TTT---GAATG-TG-GATAtt
gi|64 : atAA-C-T-A-AA-C-CCAA-G--ATAAT--CA-CAT--CG------T-AAA-TG-TTG---GAAGG-Tgta
gi|65 : TA-G-GT-TG-AAA-T-T-A-AA-G-C-AA-G--ATA-T--GC-CAT--CA------T-TAA-TG-TTT---GAAGttaagtaa
gi|66 : tcA-A-GT-TG-ATA-T-T-A-AA-C-C-AA-G--ATA-----------------------------TTT---GAAGG-TGTGATA
gi|67 : cTA-A-GT-TG-AAT-T-T-G-AA-C-C-A---------T--GA--------------------TG-TTT---GAAGG-TGTGATAgcaa
gi|68 : cTA-G-GT-GA-AAA-C-T-A-AA-C-C-AA-G--ATA-T--TG-CAT--AA------T-AAA-TG-TTgc
gi|69 : g-A-GT-TG-AAT-C-T-A-AA-CTC-AA-G--ATA-T--GA-CAT--CG------T-AAA-TG-TTT---
gi|7 : A-G-GT-GG-AAA-C-T-A-AA-C-C-AA-G--ATA-T--TA-CAT--CATAAATCT-AAA-TG-TTT---GAATG-TGGGACA
gi|70 : TA-G-GT-GA-AAA-C-T-A-AA-A-C-AA-G--ATA-T--TA-CAT--CA------T-AAA-TG-Tgt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): ATAAGTTTTAAAGAACTAAACCCAAAATCACATCGTAAATTTTTGAAAGTTGTTTAAGTAA
Unaligned ( gi|8 ): CTAGTTAAAAACTAAACTCAAGGAAGATATATATAAATGTTTGAAGTTGATAGTAAAAT
Unaligned ( gi|9 ): CTAGTTAAAAACTAAACTCAAGGAAGATATATATAAATGTTTGAAGTTGATAGTAAAAT
Unaligned ( gi|51 ): CTAGGTAGAAACTAAATCAAGATCTTATATTATATTGTTTGATTGTGGGATTT
Unaligned ( gi|52 ): GTTAGAAACTAAATCAAGAATCTTAATTATAAATGTCTTGAAGTGGGGGATAT
Alignments
lowQualScore : 0 1 2222 1 2 0 3 1 1 1 5 0 22 1 22 0 00 111111 1 1 0 222 22 0
lowQualScore : . . .... . . . . . . . . . .. . .. . .. ...... . . . ... .. .
lowQualScore : 7 4 1111 3 5 6 1 2 8 2 5 6 33 8 99 6 88 888888 8 2 6 444 55 7
consensus : ATA-A-GTT----G-AAA-C-T-A-AA-C-C-AA-G--ATA-T--GA-CAT--CA------T-AAATG-T-TT---GAAG-G-TGTGATAT
Reference ( family-2074 ) : ATA-A-GTT----G-AAA-C-T-A-AA-C-C-AA-G--ATA-T--GA-CAT--CA------T-AAATG-T-TT---GAAG-G-TGTGATAT
gi|1 : TA-A-GTT----G-AAAAT-T-G-AA-C-C-AA-G--ATA-T--GG-CAT--CA------T-AAATG-A-AT---GAAG-G-TATGATA
gi|10 : tcTA-A-GTT----G-AAA-AAT-G-AA-C-C-AA-G--ATA-T--GG-CAT--CA------T-AAATG-T-TT---GAA--G-TGTG-TATgcgaatg
gi|11 : cTA-A-GTT----A-AAAAC-T-A-AA-C-CCAA-A--ATA-T--CA-TAT--CG------T-AAATG-T-TTTTGGAAG-T-TGTagcga
gi|12 : TA-A-GTT----G-AAA-T-T-G-AA-T-C-AG-G--ATA-T--AG-CAT--CA------T-AAATG-T-AT---GAAG-G-TATGATAttgat
gi|13 : tcTA-A-GTT----G-AAAAT-T-G-AA-C-C-AA-G--ATA-T--GG-CAT--CA------T-AAATG-A-AT---GAAG-G-TATGATAgcga
gi|14 : tcTA-A-GTT----G-AAA-T-TTG-AA-C-C-AA-G--ATA-TG-GG-CAT--CA------T-AAATG---AT---GAA--G-TATGATAgcg
gi|15 : tcTA-A-GTT----G-AAA-T-TTG-AA-C-C-AA-G--ATA-TG-GG-CAT--CA------T-AAATG---AT---GAA--G-TATGATAgcga
gi|16 : tcTA-G-GTT----G-ATA-T-C-A-AA-C-G-AA-G--GTA-A--GA-CAT--CA------T-AAATA-T-TT---GCAG-A-TGTGATAgcga
gi|17 : tcTA-A-GTT----G-CA--T-T-G-AA-C-C-AA-G--ATA-TATGG-CAT--CA------T-AAATG-T-TT---GAAG-G-TGTGATAgcaa
gi|18 : cTA-A-GTT----G-AAA-G-T-G-AA-C---AA-G--ATA-T--GAGCAT--CT------T-AAATG-T-TT---GAGG-G-TGTGATAgtg
gi|19 : tcTA-A-GTT----G-ATA-T-C-A-AA-C-C-AA-G--ATA-A--GA-CAT--CA------T-AAATA-T-TT---GAAG-G-TGTGATAgcg
gi|2 : tATA-A-GTTTTAAA-GAA-C-T-A-AA-C-C-CA-A--A-A-T--CA-CAT--CG------T-AAATT-T-TT---GAAA-G-Tgcaa
gi|20 : TA-ATGTT----G-AAA-T-T-G-AA-G-C-AAAG--ATA-----G-CAT--CA------T-AAATG-T-TT---GAA--G-TATGATAtgtttaagtaa
gi|21 : tcTA-ACGTT----G-AAA-T-TTG-AA-C-C-AA-G--ATA-T--GG-CAT--CA------T--AATG-T-TT---GAAG-GTTGTGATgact
gi|22 : cTA-A-GTT----G-AAA-T-T-A-AA-C-C-AA-T--ATA-T--GA-CAT--CA------T-AAATG-T-TT---GAAG-G-TGTGATAcat
gi|23 : cTA-A-GTT----G-AAA-T-T-G-AA-C-C-AC-G--ATA-T--GC-TAT--CA------T-AAATG-T-TT---GAAG-G-TATGATAgcg
gi|24 : cTA-A-GTT----G-AAA-T-T-A-AA-G-C-AA-G--ACA-T--GC-CAT--TA------T-AAATG-T-TT---GAAG-G-TGCGATAgcg
gi|25 : cTA-A-GTT----G-ATA-T-C-A-AA-C-C-AA-G--ATA-A--GA-CAT--CA------T-AAATA-T-TT---GAAG-G-TGTGATAgca
gi|26 : tTA-A-GTT----G-AAA-C-T-A-AA-C-CCAA-G--ATA-T--GA-CAT--CG------C-AAATG-T-TT---GAAG-G-TGTgca
gi|27 : cTA-G-GTC----G-AAA-T-T-A-A--T-C-AA-G--ATA-T--GA-CAT--CA------T-AAATA-T-TT---GAAA-G-TGTGACAtagta
gi|28 : cTA-G-GTC----G-AAC-A-T-A-AT-T-C-AA-G--ATG-T--GA-CAT--CC------T-AAATG-T-TA---GAAG-G-TGTGATAgta
gi|29 : tc-GTT------AAA-C-T-A-AA-C-CCAA-G--ATA-T--CA-CAT--CG------T-AAAT--T-TT---GAAg
gi|3 : aatA-A-GTT----G-AAA-C-T-A-AAAC-C-AA-G--ATT-T--GA-CAT--GG------TAAAATG-T-TT---GAAG-A-TGTatgtttaagtaaa
gi|30 : ctaA-A-GTT----GGAAA-T-T-GGAA-C-C-AA-G--ATA-T--GA-TAT--CA------T-TAATG-T-TT---GAAG-G-TGTGAtagtaaaa
gi|31 : cA-A-GTT----GGAAA-T-T-GGAA-C-C-AA-G--ATA-T--GA-TAT--CA------T-TAATG-T-TT---GAAG-G-TGTGAagc
gi|32 : cTA-G-GTT----G-AA--T-T-G-AA-G-C-CA-G--ATA-T--GA-CAT--CA------T--AATG---TT---GAAG-G-TGTGATAagc
gi|33 : ctA-C-T-A-AA-C-CCAA-G--ATA-T--TA-CAT--CA------TAAAATGTT-TT---GAAT-G-TGgcga
gi|34 : actaggtggATA-A-GTT----G-AAA-T-T-G-AC-C-C-AA-G--ATA-T--GG-CAT--CA------T-AAATG-T-TT---GAAG-G-TGTGATATggcag
gi|35 : TA-A-GTT----A-AAA-C-T-A-AA-C-C-CA-A--GTA-T--CA-CAT--CG------T-AAATG-T-TT---GAAG-G-TGT
gi|36 : TA-A-GTT----G-AAA-C-T-G-AA-C-C-AA-G--ATA-----G-CAT--CA--------AAATGTT-TT---GAAG-G-TGTGATAttaagt
gi|37 : c-GTT----A-AAA-C-T-A-AACC-C-AA-G--ATA-T--CA-CA---CG------T-AAA-G-T-TT---GAAG-G-TGTgcg
gi|38 : tTA-G-GTA----G-AAA-C-T-A-AA-C-C-AA-G--ATA-T--TA-CAT--CA------T-AAATG-T-TT---GAAT-G-TGGGACAttaagtaaa
gi|39 : -GTT----A-AAA-C-T-A-AC-C-CCAA-G--ATA-T--CA-CAT--CG------T-AAAT--T-TT---TAAA-G-TGTgt
gi|4 : ----G-AAA-C-TTA-AA-C-C-AA-GGAATAAT--TA-CAT--CA------T-AAATG-T-TTG--GAAT-G-TGGGACAtttaagtaa
gi|40 : taggtgtga-A-GTT----G-AAC-A-T-G-AA-C-C-AA-G--ATA----GG-TAT--CA------T-AAATG-T-TT---GAA--G-TGTGATA
gi|41 : ct-A-GTG----G-AAA-C-C-A-AA-C-C-AA-G--ATA-T--TA-CATAGCA------T-AAATG-T-TT---GAAT-G-TGGGACATagca
gi|42 : tA-A-GTT----G-AAA-C-T-A-AA-C-CCAA-A--ATA-T--GA-CAT--CG------T-AAATG-T-TT---GAAG-G-TGT
gi|43 : ATA-A-GTT----G-AAA-C-T-A-AACC-C-AA-G--ATA-T--GA-C------------C-AAATG-T-TT---GAAG-A-TGTtagta
gi|44 : TA-A-GTT----A-AAA-C-T-A-AA-C-C-AA-G--ATA-T--GG-CAT--CA------T-AAATG-T-TT---GACG-G-TGTGATAtagtaaa
gi|45 : cTA-A-GTT----G-AAA-T-T-A-AG-C---AA-G--ATA-T--G--CAT--CA------T-AAATG-T-TT---GAAG-G-TATGATA
gi|46 : TA-G-GTG----G-AAA-C-T-A-AA-C-CCAA-G--ATA-C--TA-TAT--CA------T-AAATG-T-TT---GAAT-G-TGgcg
gi|47 : cTA-A-GTT------AAA-T-T-G-AA-C-C-AA-G--ATA-T--GA-TAT--CA------T-AAATG-T-TT---GAAG-G-T-TGATAgaac
gi|48 : cA-G-GTG----A-AAA-C-T-A-AA-C-C-AA-G--ATA-T--TG-CAT--AA------T-AAATG-T-TT---GAAG-A-TGTGATAgc
gi|49 : TA-A-GTT----G-AAA-T-T-G-AA---G-AA-G--ATA-T--GG-CAT---A------T-AAAT--T-TT---GAA--G-TATGATAgt
gi|5 : c----G-AAA-C-TTA-AA-C-C-AA-GGAATAAT--TA-CAT--CA------T-AAATG-T-TTG--GAAT-G-TGGGACAgaga
gi|50 : taggtgtgaTA-A-GTT----G-AAAAC-T-G-A----C-AA-G--AT--T--GA-TAT-------------AATG-T-GT---GAAG-G-TGTGATA
gi|52 : tc-GTTA---G-AAA-C-T-A-AA-T-C-AA-GA-ATC-T--TA--AT--TA------T-AAATG-TCTT---GAAGTG-GGGGATATgcgaa
gi|53 : TA-A-GTT----G-AAA-C-T-A-AA-C-C-AA-G--ATA-T--GA-CGT--CA------T-AATTG-T-TT---GAA--G-TGT-ATA
gi|54 : -AAA-C-T-A-AA-C-C-AA-G--ATA-T--TA-CAT--CA------T-AAATG-T-TT---GAAT-G-TG-GATAgg
gi|55 : taggtat-A-GTT----G-AAA-T-T-A-AA-CTC-AA-G--ATA-T--GA-CAT--CG------T-AAATG-T-TT---GAAG-G-TGTg
gi|56 : TA-G-GTG----A-AAA-C-T-A-AA-C-C-AA-G--ATA-T--TA-CAT--CA------T-GAATG-T-TT---GAAG-G-TGTGATAtagta
gi|57 : TA-A-GTT----G-AAA-C-T-A-AA-C-CCAA-G--ATA-T--GA-CAT--CG------C-AAATG-T-TT---GAAG-G-T
gi|58 : cATACA-GTT----G-AAA-T-T-G-AA-G-C-AA-G--ATA-T--GA-CAT--C----------AATG-T-TT---GAAG-G-TGTGATAttag
gi|6 : TA-A-GTT----G-AAA-T-T-G-AA-C-C-AA-G--AAA-TTGGC-CAT--CA------T-AAATG-T-AT---GAAG-G-TATGATAg
gi|60 : c-A-GGT----G-AAA-T-T-G-AA-G-C-AA-G--ATA-T--GA-CAT--TA------T-AAATG-T-TT---GAA--G-TGT-ATAgcga
gi|61 : AA-T-T-G-AA-G-C-AT-G---TA-T--GA-CAT----------T-AAATG-T-TT---GAAG-G-TGTGATAgcg
gi|62 : aggtgTA-A-GTT----G-AAA-C-T-A-AA-C-C-AA-G--ATA-T--GA-CAT--CG------C-AAATG-T-TT---GAA--G-TGTgcgat
gi|63 : cAA-C-T-A-AA-T-C-AA-G--ATT-T--TA-CAT--TA------TAAAATG-T-TT---GAAT-G-TG-GATAtt
gi|64 : atAA-C-T-A-AA-C-CCAA-G--ATAAT--CA-CAT--CG------T-AAATG-T-TG---GAAG-G-Tgta
gi|65 : TA-G-GTT----G-AAA-T-T-A-AA-G-C-AA-G--ATA-T--GC-CAT--CA------T-TAATG-T-TT---GAAG-ttaagtaa
gi|66 : tcA-A-GTT----G-ATA-T-T-A-AA-C-C-AA-G--ATA-T----------------------------TT---GAAG-G-TGTGATA
gi|68 : cTA-G-GTG----A-AAA-C-T-A-AA-C-C-AA-G--ATA-T--TG-CAT--AA------T-AAATG-T-Tgcaa
gi|69 : g-A-GTT----G-AAT-C-T-A-AA-CTC-AA-G--ATA-T--GA-CAT--CG------T-AAATG-T-TT---
gi|7 : A-G-GTG----G-AAA-C-T-A-AA-C-C-AA-G--ATA-T--TA-CAT--CATAAATCT-AAATG-T-TT---GAAT-G-TGGGACA
gi|70 : TA-G-GTG----A-AAA-C-T-A-AA-A-C-AA-G--ATA-T--TA-CAT--CA------T-AAATG-T-gt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CTAGTTAAAAACTAAACTCAAGGAAGATATATATAAATGTTTGAAGTTGATAGTAAAAT
Unaligned ( gi|9 ): CTAGTTAAAAACTAAACTCAAGGAAGATATATATAAATGTTTGAAGTTGATAGTAAAAT
Unaligned ( gi|51 ): CTAGGTAGAAACTAAATCAAGATCTTATATTATATTGTTTGATTGTGGGATTT
Unaligned ( gi|59 ): TAAGTGTGAAATTGAAACCAAATACTGGCATCATAATTTTTGAAGACATTGA
Unaligned ( gi|67 ): CTAAGTTGAATTTGAACCATGATGTTTGAAGGTGTGATAGC
Alignments
lowQualScore : 0 1 2222 1 2 0 3 1 1 1 5 0 22 1 22 0 00 111111 1 1 0 222 22 0
lowQualScore : . . .... . . . . . . . . . .. . .. . .. ...... . . . ... .. .
lowQualScore : 7 4 1111 3 5 6 1 2 8 2 5 6 33 8 99 6 88 888888 8 2 6 444 55 7
consensus : ATA-A-GTT----G-AAA-C-T-A-AA-C-C-AA-G--ATA-T--GA-CAT--CA------T-AAATG-T-TT---GAAG-G-TGTGATAT
Reference ( family-2074 ) : ATA-A-GTT----G-AAA-C-T-A-AA-C-C-AA-G--ATA-T--GA-CAT--CA------T-AAATG-T-TT---GAAG-G-TGTGATAT
gi|1 : TA-A-GTT----G-AAAAT-T-G-AA-C-C-AA-G--ATA-T--GG-CAT--CA------T-AAATG-A-AT---GAAG-G-TATGATA
gi|10 : tcTA-A-GTT----G-AAA-AAT-G-AA-C-C-AA-G--ATA-T--GG-CAT--CA------T-AAATG-T-TT---GAA--G-TGTG-TATgcgaatg
gi|11 : cTA-A-GTT----A-AAAAC-T-A-AA-C-CCAA-A--ATA-T--CA-TAT--CG------T-AAATG-T-TTTTGGAAG-T-TGTagcga
gi|12 : TA-A-GTT----G-AAA-T-T-G-AA-T-C-AG-G--ATA-T--AG-CAT--CA------T-AAATG-T-AT---GAAG-G-TATGATAttgat
gi|13 : tcTA-A-GTT----G-AAAAT-T-G-AA-C-C-AA-G--ATA-T--GG-CAT--CA------T-AAATG-A-AT---GAAG-G-TATGATAgcga
gi|14 : tcTA-A-GTT----G-AAA-T-TTG-AA-C-C-AA-G--ATA-TG-GG-CAT--CA------T-AAATG---AT---GAA--G-TATGATAgcg
gi|15 : tcTA-A-GTT----G-AAA-T-TTG-AA-C-C-AA-G--ATA-TG-GG-CAT--CA------T-AAATG---AT---GAA--G-TATGATAgcga
gi|16 : tcTA-G-GTT----G-ATA-T-C-A-AA-C-G-AA-G--GTA-A--GA-CAT--CA------T-AAATA-T-TT---GCAG-A-TGTGATAgcga
gi|17 : tcTA-A-GTT----G-CA--T-T-G-AA-C-C-AA-G--ATA-TATGG-CAT--CA------T-AAATG-T-TT---GAAG-G-TGTGATAgcaa
gi|18 : cTA-A-GTT----G-AAA-G-T-G-AA-C---AA-G--ATA-T--GAGCAT--CT------T-AAATG-T-TT---GAGG-G-TGTGATAgtg
gi|19 : tcTA-A-GTT----G-ATA-T-C-A-AA-C-C-AA-G--ATA-A--GA-CAT--CA------T-AAATA-T-TT---GAAG-G-TGTGATAgcg
gi|2 : tATA-A-GTTTTAAA-GAA-C-T-A-AA-C-C-CA-A--A-A-T--CA-CAT--CG------T-AAATT-T-TT---GAAA-G-Tgcaa
gi|20 : TA-ATGTT----G-AAA-T-T-G-AA-G-C-AAAG--ATA-----G-CAT--CA------T-AAATG-T-TT---GAA--G-TATGATAtgtttaagtaa
gi|21 : tcTA-ACGTT----G-AAA-T-TTG-AA-C-C-AA-G--ATA-T--GG-CAT--CA------T--AATG-T-TT---GAAG-GTTGTGATgact
gi|22 : cTA-A-GTT----G-AAA-T-T-A-AA-C-C-AA-T--ATA-T--GA-CAT--CA------T-AAATG-T-TT---GAAG-G-TGTGATAcat
gi|23 : cTA-A-GTT----G-AAA-T-T-G-AA-C-C-AC-G--ATA-T--GC-TAT--CA------T-AAATG-T-TT---GAAG-G-TATGATAgcg
gi|24 : cTA-A-GTT----G-AAA-T-T-A-AA-G-C-AA-G--ACA-T--GC-CAT--TA------T-AAATG-T-TT---GAAG-G-TGCGATAgcg
gi|25 : cTA-A-GTT----G-ATA-T-C-A-AA-C-C-AA-G--ATA-A--GA-CAT--CA------T-AAATA-T-TT---GAAG-G-TGTGATAgca
gi|26 : tTA-A-GTT----G-AAA-C-T-A-AA-C-CCAA-G--ATA-T--GA-CAT--CG------C-AAATG-T-TT---GAAG-G-TGTgca
gi|27 : cTA-G-GTC----G-AAA-T-T-A-A--T-C-AA-G--ATA-T--GA-CAT--CA------T-AAATA-T-TT---GAAA-G-TGTGACAtagta
gi|28 : cTA-G-GTC----G-AAC-A-T-A-AT-T-C-AA-G--ATG-T--GA-CAT--CC------T-AAATG-T-TA---GAAG-G-TGTGATAgta
gi|29 : tc-GTT------AAA-C-T-A-AA-C-CCAA-G--ATA-T--CA-CAT--CG------T-AAAT--T-TT---GAAg
gi|3 : aatA-A-GTT----G-AAA-C-T-A-AAAC-C-AA-G--ATT-T--GA-CAT--GG------TAAAATG-T-TT---GAAG-A-TGTatgtttaagtaaa
gi|30 : ctaA-A-GTT----GGAAA-T-T-GGAA-C-C-AA-G--ATA-T--GA-TAT--CA------T-TAATG-T-TT---GAAG-G-TGTGAtagtaaaa
gi|31 : cA-A-GTT----GGAAA-T-T-GGAA-C-C-AA-G--ATA-T--GA-TAT--CA------T-TAATG-T-TT---GAAG-G-TGTGAagc
gi|32 : cTA-G-GTT----G-AA--T-T-G-AA-G-C-CA-G--ATA-T--GA-CAT--CA------T--AATG---TT---GAAG-G-TGTGATAagc
gi|33 : ctA-C-T-A-AA-C-CCAA-G--ATA-T--TA-CAT--CA------TAAAATGTT-TT---GAAT-G-TGgcga
gi|34 : actaggtggATA-A-GTT----G-AAA-T-T-G-AC-C-C-AA-G--ATA-T--GG-CAT--CA------T-AAATG-T-TT---GAAG-G-TGTGATATggcag
gi|35 : TA-A-GTT----A-AAA-C-T-A-AA-C-C-CA-A--GTA-T--CA-CAT--CG------T-AAATG-T-TT---GAAG-G-TGT
gi|36 : TA-A-GTT----G-AAA-C-T-G-AA-C-C-AA-G--ATA-----G-CAT--CA--------AAATGTT-TT---GAAG-G-TGTGATAttaagt
gi|37 : c-GTT----A-AAA-C-T-A-AACC-C-AA-G--ATA-T--CA-CA---CG------T-AAA-G-T-TT---GAAG-G-TGTgcg
gi|38 : tTA-G-GTA----G-AAA-C-T-A-AA-C-C-AA-G--ATA-T--TA-CAT--CA------T-AAATG-T-TT---GAAT-G-TGGGACAttaagtaaa
gi|39 : -GTT----A-AAA-C-T-A-AC-C-CCAA-G--ATA-T--CA-CAT--CG------T-AAAT--T-TT---TAAA-G-TGTgt
gi|4 : ----G-AAA-C-TTA-AA-C-C-AA-GGAATAAT--TA-CAT--CA------T-AAATG-T-TTG--GAAT-G-TGGGACAtttaagtaa
gi|40 : taggtgtga-A-GTT----G-AAC-A-T-G-AA-C-C-AA-G--ATA----GG-TAT--CA------T-AAATG-T-TT---GAA--G-TGTGATA
gi|41 : ct-A-GTG----G-AAA-C-C-A-AA-C-C-AA-G--ATA-T--TA-CATAGCA------T-AAATG-T-TT---GAAT-G-TGGGACATagca
gi|42 : tA-A-GTT----G-AAA-C-T-A-AA-C-CCAA-A--ATA-T--GA-CAT--CG------T-AAATG-T-TT---GAAG-G-TGT
gi|43 : ATA-A-GTT----G-AAA-C-T-A-AACC-C-AA-G--ATA-T--GA-C------------C-AAATG-T-TT---GAAG-A-TGTtagta
gi|44 : TA-A-GTT----A-AAA-C-T-A-AA-C-C-AA-G--ATA-T--GG-CAT--CA------T-AAATG-T-TT---GACG-G-TGTGATAtagtaaa
gi|45 : cTA-A-GTT----G-AAA-T-T-A-AG-C---AA-G--ATA-T--G--CAT--CA------T-AAATG-T-TT---GAAG-G-TATGATA
gi|46 : TA-G-GTG----G-AAA-C-T-A-AA-C-CCAA-G--ATA-C--TA-TAT--CA------T-AAATG-T-TT---GAAT-G-TGgcg
gi|47 : cTA-A-GTT------AAA-T-T-G-AA-C-C-AA-G--ATA-T--GA-TAT--CA------T-AAATG-T-TT---GAAG-G-T-TGATAgaac
gi|48 : cA-G-GTG----A-AAA-C-T-A-AA-C-C-AA-G--ATA-T--TG-CAT--AA------T-AAATG-T-TT---GAAG-A-TGTGATAgc
gi|49 : TA-A-GTT----G-AAA-T-T-G-AA---G-AA-G--ATA-T--GG-CAT---A------T-AAAT--T-TT---GAA--G-TATGATAgt
gi|5 : c----G-AAA-C-TTA-AA-C-C-AA-GGAATAAT--TA-CAT--CA------T-AAATG-T-TTG--GAAT-G-TGGGACAgaga
gi|50 : taggtgtgaTA-A-GTT----G-AAAAC-T-G-A----C-AA-G--AT--T--GA-TAT-------------AATG-T-GT---GAAG-G-TGTGATA
gi|52 : tc-GTTA---G-AAA-C-T-A-AA-T-C-AA-GA-ATC-T--TA--AT--TA------T-AAATG-TCTT---GAAGTG-GGGGATATgcgaa
gi|53 : TA-A-GTT----G-AAA-C-T-A-AA-C-C-AA-G--ATA-T--GA-CGT--CA------T-AATTG-T-TT---GAA--G-TGT-ATA
gi|54 : -AAA-C-T-A-AA-C-C-AA-G--ATA-T--TA-CAT--CA------T-AAATG-T-TT---GAAT-G-TG-GATAgg
gi|55 : taggtat-A-GTT----G-AAA-T-T-A-AA-CTC-AA-G--ATA-T--GA-CAT--CG------T-AAATG-T-TT---GAAG-G-TGTg
gi|56 : TA-G-GTG----A-AAA-C-T-A-AA-C-C-AA-G--ATA-T--TA-CAT--CA------T-GAATG-T-TT---GAAG-G-TGTGATAtagta
gi|57 : TA-A-GTT----G-AAA-C-T-A-AA-C-CCAA-G--ATA-T--GA-CAT--CG------C-AAATG-T-TT---GAAG-G-T
gi|58 : cATACA-GTT----G-AAA-T-T-G-AA-G-C-AA-G--ATA-T--GA-CAT--C----------AATG-T-TT---GAAG-G-TGTGATAttag
gi|6 : TA-A-GTT----G-AAA-T-T-G-AA-C-C-AA-G--AAA-TTGGC-CAT--CA------T-AAATG-T-AT---GAAG-G-TATGATAg
gi|60 : c-A-GGT----G-AAA-T-T-G-AA-G-C-AA-G--ATA-T--GA-CAT--TA------T-AAATG-T-TT---GAA--G-TGT-ATAgcga
gi|61 : AA-T-T-G-AA-G-C-AT-G---TA-T--GA-CAT----------T-AAATG-T-TT---GAAG-G-TGTGATAgcg
gi|62 : aggtgTA-A-GTT----G-AAA-C-T-A-AA-C-C-AA-G--ATA-T--GA-CAT--CG------C-AAATG-T-TT---GAA--G-TGTgcgat
gi|63 : cAA-C-T-A-AA-T-C-AA-G--ATT-T--TA-CAT--TA------TAAAATG-T-TT---GAAT-G-TG-GATAtt
gi|64 : atAA-C-T-A-AA-C-CCAA-G--ATAAT--CA-CAT--CG------T-AAATG-T-TG---GAAG-G-Tgta
gi|65 : TA-G-GTT----G-AAA-T-T-A-AA-G-C-AA-G--ATA-T--GC-CAT--CA------T-TAATG-T-TT---GAAG-ttaagtaa
gi|66 : tcA-A-GTT----G-ATA-T-T-A-AA-C-C-AA-G--ATA-T----------------------------TT---GAAG-G-TGTGATA
gi|68 : cTA-G-GTG----A-AAA-C-T-A-AA-C-C-AA-G--ATA-T--TG-CAT--AA------T-AAATG-T-Tgcaa
gi|69 : g-A-GTT----G-AAT-C-T-A-AA-CTC-AA-G--ATA-T--GA-CAT--CG------T-AAATG-T-TT---
gi|7 : A-G-GTG----G-AAA-C-T-A-AA-C-C-AA-G--ATA-T--TA-CAT--CATAAATCT-AAATG-T-TT---GAAT-G-TGGGACA
gi|70 : TA-G-GTG----A-AAA-C-T-A-AA-A-C-AA-G--ATA-T--TA-CAT--CA------T-AAATG-T-gt
blockSeqs : T TTAA G A T G A T C GA A AT TAAATC A T TTG GT
blockSeqs : C A G A T G C T C GA A TG . A T G G
blockSeqs : . . . A T . C . C A A G . A . G G
blockSeqs : . . . . T . . . C . . G . . . . G
blockSeqs : . . . . T . . . C . . . . . . . G
blockSeqs : . . . . . . . . C . . . . . . . G
blockSeqs : . . . . . . . . C . . . . . . . G
blockSeqs : . . . . . . . . C . . . . . . . G
blockSeqs : . . . . . . . . C . . . . . . . A
blockSeqs : . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . A
blockSeqs : . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . T
blockSeqs : . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . T
blockSeqs : . . . . . . . . . . . . . . . . A
blockSeqs : . . . . . . . . . . . . . . . . T
blockSeqs : . . . . . . . . . . . . . . . . T
blockSeqs : . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . T
blockSeqs : . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . T
blockSeqs : . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . T
blockSeqs : . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . T
blockSeqs : . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . T
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqCons :
originalCons : ATA-A-GTT----G-AAA-C-T-A-AA-C-C-AA-G--ATA-T--GA-CAT--CA------T-AAATG-T-TT---GAAG-G-TGTGATAT
finalCons : ATA-A-GTT----G-AAA-C-T-A-AA-C-C-AA-G--ATA-T--GA-CAT--CA------T-AAATG-T-TT---GAAG-G-TGTGATAT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CTAGTTAAAAACTAAACTCAAGGAAGATATATATAAATGTTTGAAGTTGATAGTAAAAT
Unaligned ( gi|9 ): CTAGTTAAAAACTAAACTCAAGGAAGATATATATAAATGTTTGAAGTTGATAGTAAAAT
Unaligned ( gi|51 ): CTAGGTAGAAACTAAATCAAGATCTTATATTATATTGTTTGATTGTGGGATTT
Unaligned ( gi|59 ): TAAGTGTGAAATTGAAACCAAATACTGGCATCATAATTTTTGAAGACATTGA
Unaligned ( gi|67 ): CTAAGTTGAATTTGAACCATGATGTTTGAAGGTGTGATAGC
Alignments
lowQualScore : 0 1 2222 1 2 0 3 1 1 1 5 0 22 1 22 0 00 111111 1 1 0 222 22 0
lowQualScore : . . .... . . . . . . . . . .. . .. . .. ...... . . . ... .. .
lowQualScore : 7 4 1111 3 5 6 1 2 8 2 5 6 33 8 99 6 88 888888 8 2 6 444 55 7
consensus : ATA-A-GTT----G-AAA-C-T-A-AA-C-C-AA-G--ATA-T--GA-CAT--CA------T-AAATG-T-TT---GAAG-G-TGTGATAT
Reference ( family-2074 ) : ATA-A-GTT----G-AAA-C-T-A-AA-C-C-AA-G--ATA-T--GA-CAT--CA------T-AAATG-T-TT---GAAG-G-TGTGATAT
gi|1 : TA-A-GTT----G-AAAAT-T-G-AA-C-C-AA-G--ATA-T--GG-CAT--CA------T-AAATG-A-AT---GAAG-G-TATGATA
gi|10 : tcTA-A-GTT----G-AAA-AAT-G-AA-C-C-AA-G--ATA-T--GG-CAT--CA------T-AAATG-T-TT---GAA--G-TGTG-TATgcgaatg
gi|11 : cTA-A-GTT----A-AAAAC-T-A-AA-C-CCAA-A--ATA-T--CA-TAT--CG------T-AAATG-T-TTTTGGAAG-T-TGTagcga
gi|12 : TA-A-GTT----G-AAA-T-T-G-AA-T-C-AG-G--ATA-T--AG-CAT--CA------T-AAATG-T-AT---GAAG-G-TATGATAttgat
gi|13 : tcTA-A-GTT----G-AAAAT-T-G-AA-C-C-AA-G--ATA-T--GG-CAT--CA------T-AAATG-A-AT---GAAG-G-TATGATAgcga
gi|14 : tcTA-A-GTT----G-AAA-T-TTG-AA-C-C-AA-G--ATA-TG-GG-CAT--CA------T-AAATG---AT---GAA--G-TATGATAgcg
gi|15 : tcTA-A-GTT----G-AAA-T-TTG-AA-C-C-AA-G--ATA-TG-GG-CAT--CA------T-AAATG---AT---GAA--G-TATGATAgcga
gi|16 : tcTA-G-GTT----G-ATA-T-C-A-AA-C-G-AA-G--GTA-A--GA-CAT--CA------T-AAATA-T-TT---GCAG-A-TGTGATAgcga
gi|17 : tcTA-A-GTT----G-CA--T-T-G-AA-C-C-AA-G--ATA-TATGG-CAT--CA------T-AAATG-T-TT---GAAG-G-TGTGATAgcaa
gi|18 : cTA-A-GTT----G-AAA-G-T-G-AA-C---AA-G--ATA-T--GAGCAT--CT------T-AAATG-T-TT---GAGG-G-TGTGATAgtg
gi|19 : tcTA-A-GTT----G-ATA-T-C-A-AA-C-C-AA-G--ATA-A--GA-CAT--CA------T-AAATA-T-TT---GAAG-G-TGTGATAgcg
gi|2 : tATA-A-GTTTTAAA-GAA-C-T-A-AA-C-C-CA-A--A-A-T--CA-CAT--CG------T-AAATT-T-TT---GAAA-G-Tgcaa
gi|20 : TA-ATGTT----G-AAA-T-T-G-AA-G-C-AAAG--ATA-----G-CAT--CA------T-AAATG-T-TT---GAA--G-TATGATAtgtttaagtaa
gi|21 : tcTA-ACGTT----G-AAA-T-TTG-AA-C-C-AA-G--ATA-T--GG-CAT--CA------T--AATG-T-TT---GAAG-GTTGTGATgact
gi|22 : cTA-A-GTT----G-AAA-T-T-A-AA-C-C-AA-T--ATA-T--GA-CAT--CA------T-AAATG-T-TT---GAAG-G-TGTGATAcat
gi|23 : cTA-A-GTT----G-AAA-T-T-G-AA-C-C-AC-G--ATA-T--GC-TAT--CA------T-AAATG-T-TT---GAAG-G-TATGATAgcg
gi|24 : cTA-A-GTT----G-AAA-T-T-A-AA-G-C-AA-G--ACA-T--GC-CAT--TA------T-AAATG-T-TT---GAAG-G-TGCGATAgcg
gi|25 : cTA-A-GTT----G-ATA-T-C-A-AA-C-C-AA-G--ATA-A--GA-CAT--CA------T-AAATA-T-TT---GAAG-G-TGTGATAgca
gi|26 : tTA-A-GTT----G-AAA-C-T-A-AA-C-CCAA-G--ATA-T--GA-CAT--CG------C-AAATG-T-TT---GAAG-G-TGTgca
gi|27 : cTA-G-GTC----G-AAA-T-T-A-A--T-C-AA-G--ATA-T--GA-CAT--CA------T-AAATA-T-TT---GAAA-G-TGTGACAtagta
gi|28 : cTA-G-GTC----G-AAC-A-T-A-AT-T-C-AA-G--ATG-T--GA-CAT--CC------T-AAATG-T-TA---GAAG-G-TGTGATAgta
gi|29 : tc-GTT------AAA-C-T-A-AA-C-CCAA-G--ATA-T--CA-CAT--CG------T-AAAT--T-TT---GAAg
gi|3 : aatA-A-GTT----G-AAA-C-T-A-AAAC-C-AA-G--ATT-T--GA-CAT--GG------TAAAATG-T-TT---GAAG-A-TGTatgtttaagtaaa
gi|30 : ctaA-A-GTT----GGAAA-T-T-GGAA-C-C-AA-G--ATA-T--GA-TAT--CA------T-TAATG-T-TT---GAAG-G-TGTGAtagtaaaa
gi|31 : cA-A-GTT----GGAAA-T-T-GGAA-C-C-AA-G--ATA-T--GA-TAT--CA------T-TAATG-T-TT---GAAG-G-TGTGAagc
gi|32 : cTA-G-GTT----G-AA--T-T-G-AA-G-C-CA-G--ATA-T--GA-CAT--CA------T--AATG---TT---GAAG-G-TGTGATAagc
gi|33 : ctA-C-T-A-AA-C-CCAA-G--ATA-T--TA-CAT--CA------TAAAATGTT-TT---GAAT-G-TGgcga
gi|34 : actaggtggATA-A-GTT----G-AAA-T-T-G-AC-C-C-AA-G--ATA-T--GG-CAT--CA------T-AAATG-T-TT---GAAG-G-TGTGATATggcag
gi|35 : TA-A-GTT----A-AAA-C-T-A-AA-C-C-CA-A--GTA-T--CA-CAT--CG------T-AAATG-T-TT---GAAG-G-TGT
gi|36 : TA-A-GTT----G-AAA-C-T-G-AA-C-C-AA-G--ATA-----G-CAT--CA--------AAATGTT-TT---GAAG-G-TGTGATAttaagt
gi|37 : c-GTT----A-AAA-C-T-A-AACC-C-AA-G--ATA-T--CA-CA---CG------T-AAA-G-T-TT---GAAG-G-TGTgcg
gi|38 : tTA-G-GTA----G-AAA-C-T-A-AA-C-C-AA-G--ATA-T--TA-CAT--CA------T-AAATG-T-TT---GAAT-G-TGGGACAttaagtaaa
gi|39 : -GTT----A-AAA-C-T-A-AC-C-CCAA-G--ATA-T--CA-CAT--CG------T-AAAT--T-TT---TAAA-G-TGTgt
gi|4 : ----G-AAA-C-TTA-AA-C-C-AA-GGAATAAT--TA-CAT--CA------T-AAATG-T-TTG--GAAT-G-TGGGACAtttaagtaa
gi|40 : taggtgtga-A-GTT----G-AAC-A-T-G-AA-C-C-AA-G--ATA----GG-TAT--CA------T-AAATG-T-TT---GAA--G-TGTGATA
gi|41 : ct-A-GTG----G-AAA-C-C-A-AA-C-C-AA-G--ATA-T--TA-CATAGCA------T-AAATG-T-TT---GAAT-G-TGGGACATagca
gi|42 : tA-A-GTT----G-AAA-C-T-A-AA-C-CCAA-A--ATA-T--GA-CAT--CG------T-AAATG-T-TT---GAAG-G-TGT
gi|43 : ATA-A-GTT----G-AAA-C-T-A-AACC-C-AA-G--ATA-T--GA-C------------C-AAATG-T-TT---GAAG-A-TGTtagta
gi|44 : TA-A-GTT----A-AAA-C-T-A-AA-C-C-AA-G--ATA-T--GG-CAT--CA------T-AAATG-T-TT---GACG-G-TGTGATAtagtaaa
gi|45 : cTA-A-GTT----G-AAA-T-T-A-AG-C---AA-G--ATA-T--G--CAT--CA------T-AAATG-T-TT---GAAG-G-TATGATA
gi|46 : TA-G-GTG----G-AAA-C-T-A-AA-C-CCAA-G--ATA-C--TA-TAT--CA------T-AAATG-T-TT---GAAT-G-TGgcg
gi|47 : cTA-A-GTT------AAA-T-T-G-AA-C-C-AA-G--ATA-T--GA-TAT--CA------T-AAATG-T-TT---GAAG-G-T-TGATAgaac
gi|48 : cA-G-GTG----A-AAA-C-T-A-AA-C-C-AA-G--ATA-T--TG-CAT--AA------T-AAATG-T-TT---GAAG-A-TGTGATAgc
gi|49 : TA-A-GTT----G-AAA-T-T-G-AA---G-AA-G--ATA-T--GG-CAT---A------T-AAAT--T-TT---GAA--G-TATGATAgt
gi|5 : c----G-AAA-C-TTA-AA-C-C-AA-GGAATAAT--TA-CAT--CA------T-AAATG-T-TTG--GAAT-G-TGGGACAgaga
gi|50 : taggtgtgaTA-A-GTT----G-AAAAC-T-G-A----C-AA-G--AT--T--GA-TAT-------------AATG-T-GT---GAAG-G-TGTGATA
gi|52 : tc-GTTA---G-AAA-C-T-A-AA-T-C-AA-GA-ATC-T--TA--AT--TA------T-AAATG-TCTT---GAAGTG-GGGGATATgcgaa
gi|53 : TA-A-GTT----G-AAA-C-T-A-AA-C-C-AA-G--ATA-T--GA-CGT--CA------T-AATTG-T-TT---GAA--G-TGT-ATA
gi|54 : -AAA-C-T-A-AA-C-C-AA-G--ATA-T--TA-CAT--CA------T-AAATG-T-TT---GAAT-G-TG-GATAgg
gi|55 : taggtat-A-GTT----G-AAA-T-T-A-AA-CTC-AA-G--ATA-T--GA-CAT--CG------T-AAATG-T-TT---GAAG-G-TGTg
gi|56 : TA-G-GTG----A-AAA-C-T-A-AA-C-C-AA-G--ATA-T--TA-CAT--CA------T-GAATG-T-TT---GAAG-G-TGTGATAtagta
gi|57 : TA-A-GTT----G-AAA-C-T-A-AA-C-CCAA-G--ATA-T--GA-CAT--CG------C-AAATG-T-TT---GAAG-G-T
gi|58 : cATACA-GTT----G-AAA-T-T-G-AA-G-C-AA-G--ATA-T--GA-CAT--C----------AATG-T-TT---GAAG-G-TGTGATAttag
gi|6 : TA-A-GTT----G-AAA-T-T-G-AA-C-C-AA-G--AAA-TTGGC-CAT--CA------T-AAATG-T-AT---GAAG-G-TATGATAg
gi|60 : c-A-GGT----G-AAA-T-T-G-AA-G-C-AA-G--ATA-T--GA-CAT--TA------T-AAATG-T-TT---GAA--G-TGT-ATAgcga
gi|61 : AA-T-T-G-AA-G-C-AT-G---TA-T--GA-CAT----------T-AAATG-T-TT---GAAG-G-TGTGATAgcg
gi|62 : aggtgTA-A-GTT----G-AAA-C-T-A-AA-C-C-AA-G--ATA-T--GA-CAT--CG------C-AAATG-T-TT---GAA--G-TGTgcgat
gi|63 : cAA-C-T-A-AA-T-C-AA-G--ATT-T--TA-CAT--TA------TAAAATG-T-TT---GAAT-G-TG-GATAtt
gi|64 : atAA-C-T-A-AA-C-CCAA-G--ATAAT--CA-CAT--CG------T-AAATG-T-TG---GAAG-G-Tgta
gi|65 : TA-G-GTT----G-AAA-T-T-A-AA-G-C-AA-G--ATA-T--GC-CAT--CA------T-TAATG-T-TT---GAAG-ttaagtaa
gi|66 : tcA-A-GTT----G-ATA-T-T-A-AA-C-C-AA-G--ATA-T----------------------------TT---GAAG-G-TGTGATA
gi|68 : cTA-G-GTG----A-AAA-C-T-A-AA-C-C-AA-G--ATA-T--TG-CAT--AA------T-AAATG-T-Tgcaa
gi|69 : g-A-GTT----G-AAT-C-T-A-AA-CTC-AA-G--ATA-T--GA-CAT--CG------T-AAATG-T-TT---
gi|7 : A-G-GTG----G-AAA-C-T-A-AA-C-C-AA-G--ATA-T--TA-CAT--CATAAATCT-AAATG-T-TT---GAAT-G-TGGGACA
gi|70 : TA-G-GTG----A-AAA-C-T-A-AA-A-C-AA-G--ATA-T--TA-CAT--CA------T-AAATG-T-gt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CTAGTTAAAAACTAAACTCAAGGAAGATATATATAAATGTTTGAAGTTGATAGTAAAAT
Unaligned ( gi|9 ): CTAGTTAAAAACTAAACTCAAGGAAGATATATATAAATGTTTGAAGTTGATAGTAAAAT
Unaligned ( gi|51 ): CTAGGTAGAAACTAAATCAAGATCTTATATTATATTGTTTGATTGTGGGATTT
Unaligned ( gi|59 ): TAAGTGTGAAATTGAAACCAAATACTGGCATCATAATTTTTGAAGACATTGA
Unaligned ( gi|67 ): CTAAGTTGAATTTGAACCATGATGTTTGAAGGTGTGATAGC