lowQualScore : 111 11 11 33333 11111 2 22222222222222222222 2222 1111 222 2222 11 55555555555555555555555555 33333333 2 1 111 111 8888888888888888888888888888888888 11 2222222222 1 22 2222222222222222222222222 11 6666666666666666666666666666666666666666 4444444444444444444444444444444 3 2222 3
lowQualScore : 3 777 66 11 77777 88888 1 11111111111111111111 9999 6 2 666 2 2222 333 7 6 8888 55 6 6 11111111111111111111111111 99 22222222 6 0 6 1 555 555 8888 77 5 1111111111111111111111111111111111 77 33 3333333333 3 2 2 2 4444 22 2 4 2 55 2 2 3333333333333333333333333 2 2 2 33 3333333333333333333333333333333333333333 33 33 77 2 2 33 2222222222222222222222222222222 0 2 2 2 0000 0
lowQualScore : . ... .. .. ..... ..... . .................... .... . . ... . .... ... . . .... .. . . .......................... .. ........ . . . . ... ... .... .. . .................................. .. .. .......... . . . . .... .. . . . .. . . ......................... . . . .. ........................................ .. .. .. . . .. ............................... . . . . .... .
lowQualScore : 6 444 88 00 88888 88888 6 66666666666666666666 0000 7 2 888 5 3333 222 3 7 3333 88 7 7 88888888888888888888888888 22 55555555 7 0 7 4 777 000 3333 99 7 0000000000000000000000000000000000 55 77 8888888888 9 2 2 2 7777 66 1 0 0 88 0 0 2222222222222222222222222 1 1 1 44 5555555555555555555555555555555555555555 44 44 66 4 4 22 5555555555555555555555555555555 5 5 4 5 7777 0
consensus : TTTNATTTG-T-GTAAAGAAAA-TTTCA--TCAACCGTATCCA--TGTCCGTACTTTCATG----GAATGAA-TTGAG---AGCACG--TG-TANGG-A-CCCTTTT--ATAGACAG-T-TACTAC-TG-TTGAAT--AG-ATGAACGGTACCATGCAAC-AGNACC--ATATTTTGTC-ACCTTGACTGT--TCAGA-G------T-GCTCGC-TT-GTA-TT---CAGCAAGTGAAATAG-T--TGAA--T-GGTTT-TT----ATC----AGCA---GG--C---CCC-GTTAAGGGAATAT-TTTTTAA-G--GT-AA-GATAAA-T-A-A----CGNG-A-TGGT-GTTGGAAT-A-GTTCA-------------------------GAGAA-A-G-CATC--CCAC--AACTC-G-GCC-TTC---GG-CC------CNC----GG--T--GG-NGAT-G-C--TTTCT-CTGA------------------------AACTAT-TCAACACCA-T-CTC-GTTATTTATTCCATTA
Reference ( gi|3 ) : TTTAATTTG-T-GTAAAGAAAA-TTTCA--TCA-CTGTATCCA--T-TCCGTACTATCATG----GAATGAA-TTAAG---AGCATC--TG-TAAGG-A-CCCTTAT--ATAGACAG-T-TACTAC-TG-T-GAAT--AG-ATGAATGGTACCATGCAAC-AGGACCCAATATTTTGTCAACCTTGATTGT--TCAGA-G------T-GCTCGC-TT-GTA-TT---CAGCAAGTGAAATAG-T--TGAA--T-GGTTT-T-----AT-----AGCA---GG--C---CCCTTTTAAGGGAATAT-TTTTTAA-G--GT-AA-GATATA-T-A-A----CGAG-A-TGGT-GTTGGAAT-A-GTTCA-------------------------GAGAA-A-G-CATC--CCAC--AACTC-G-GCC-TTC---GGCCC------CCC----GG--T--GG-CGAT-G-C--TTT-T-CTGA------------------------AACTATGTCAACACCA-T-CTC-TTAATTTAGTCCATTA
gi|2 : TTTAATTTG-T-GTAAAGAAAAATTTCA--TCAACTGTATCCA--T--CCGTACTTTCATG----GGAAGAA-T-AAG---AGCACG--TGATAGAG-A-CC--TAT--ATAGACAGGT-TACTAC-TG-TTGAATG-AG-ATGAATGGTACCATGCAAC-AGA---CAGTATTT-GTGAAC--TGATTGT---CAGA-GAAGTAGT-GCTCGC-TTTGTA-TTT--CAGCAAGTGAA-TAG-T---GAA--T-GGTTT-TTT---ATC----AGCA---GGGGC---CCCGGTTTAGGGAA-AT-TTTTTAA-G---T-A--GATATA-TTACA----CGAG-A-TGG--GTTGAAAT-A-GTTCA-------------------------GA--A-A-G-CATC--CC-C--AACTCGG-GCC-TTC---GGCCC------TTC-----G--T--GGCCGAT-G-C--TTTCT-CTG-------------------------AACTAT-TCAACACCA-TGCTC-GT-ATTTATTTCGT
gi|7 : TTTCATTTG-A-GTAAAGAAAA-TTCCA--TCA-ACA-ATCCA--TGTCCCTACTTTCATG----AAATGAA-TTGAG---AGCACG--TG-TATGG-A-CCCTTTT--ATAGACAG---AACTAC-TGTT-GAAT--AG-ATGAACGGTACCATGCAAC-A-TACC--ATA-TCTGTC-ACCTT-ACTAT--TCAGA-G------T-GCTTGCATT-GTATTT---CAGCAAGTG-AATAG-T--TGAA--T-GGTTTCT-----ATC----AGCAAG-GG--T---TCC-GTTAAGGGAAT-T-TTTTTAA----GT-AA-GATAAA-T-A-A----CTCG-A-TGGT-GTT-GAAT-A-GTTCA-------------------------GAGAA-A-A-CACC--CCgattacta
gi|6 : TTTCATTTGAT-GTAAAGAAAAGTTCCAGCTCA-ACA-ATCCA--TGTCCCTACTTTCATGTTTCAAATGAAATTGAGCAAGGCACG--TG-TATGG-A-CCCTTTT--ATAGACAA----ACTACCTG-TTGAAT--AG-AT-AACGGTACCATGCAACCACTACC--ATATCT-GTCACGCTT-ACTAT--TCAGACG------TTGCTTGCATT-GTA-TT---TCGCAAGTGAAATAG-AAATGAA--TCGGTTT-TTTTCTATTC---AGCA---AG--CGT-TCCTGTTAAGGAACT-T-TTTTTAA-A--GTCAA-GATAAAAT-A-AACTCCGCA-T-TGGT-GCTTGAAT-A-GTTCA-------------------------GAGAA-ACA-CACC--CC
gi|4 : TTTGATTTG-A-GTAAAGACAA-TTTCA--TTAACTG-ATCGAATT-TCCGTATT-TTATG----GAC-------------AGCTTG--TG-TAAGA-G-CCATTTTCCATACACTG-T-TACTGT-TG----AATCAAT-ATGAATGATTCCATCCGAC-A-AACC--ATA-TCTATCG--CCTGACTGT--TTAGA--------T---------------TT---TAGCAAGTG-AATAG-T--TGAA--T-GGTTTCT-----ATATGTCAGCAAG-GG--T---TCC-GTTAAGGGAAT-T-ATTATAA-G--G--AA-CACA-A-T-A-A----CTCG-A-TGATCGCT-GAAT-A-GTTC
gi|1 : aattgaattcttctcaggttttgaattcccgattcattgagacgtatcatatttacaatagctaattTAATTTG-TTGTAAAAAAA---TTCA--TCAACTGTATCCA--T-TCCGTACTTTCATG----G-ATGAA-TTAAG---AGCA-CGATG-TAAGGCA-CCCTTAT---TAGACAT-C-TAC--C-TG-T--AAT--AGCATGAATAGTACCATGCAAC-AGCACC--ATATCTTGTC-ACCT--A-TGT--TCAGA--------T-GCTCGCTTT-GTATTT---CAGCAAGTGAA--AGTT--TGAA--T-TGGTT-T-----ATTC---AGCA---GG--CAGGCCCCGTTAGGGAAA----TTTTTAA-G--GT-A---ATATA-T-A-A----CGAG-A-T-GT-GTTG--ATGA-GTTCA-------------------------GAGAATA-GCCATC--CC-C--AACTC-G-GGC-TTC---GGCCC------CCTCGCGGG--T--GG-C-AT-G-C--TTTCT-CTTG------------------------AACTAT-TCAACACCATT-CTCGTTA---TA--CCATTA
gi|5 : aacttcttagagata--TG-GAAGG-AACTCTT-T--ATAGACAG-TATGC-AC-TG-TTGAAT--AA-ATGAATGGTGCCATGCAAC-AGAACCTA----TTTGTCTACC-TGGTTGTCATC-GA-G------T-GCTCGT-TT-GTA-TTTCATAGCAAGTG-AATAG-T--TGAATTT-GATTT-TC----AT-----AGCAGCGGG--C---TC--GTTAAGGA---AT-TTTTCA-----GT-AAGGATAAA-T-A-A----CTCG-ATTGAT-GTT-GAAT-A-GTTAT-------------------------GAGAA-A-G-CATC--TCCC--AACTC-G-GCCTTTC---GGTCC------ATC----GG--T--GG-CGAT-G-C--TTTCT-CNNNNNNNNNNNNNNNNNNNNNNNNNTGAACTAT-TCAACACCA-T-CAA-GTTATTTA-TCCATTcaacattaagacatata
gi|11 : -TT---CAGCAAGTTAA-TAG-T--TGAA--T-GGTTT-TT----ATC----AGCA---GGGGT---CCGTTT--AGGGAA-AT-TTT---A-A--GT-AA-GATAAA-T-A-A----CGAA-A-TGGT-GTT-GAAT-G-GTTCA-------------------------GAAAA-A-G-CATT--CC-C--AACTC-GAGCC-TTC---
gi|10 : tatatGGAAT-T-GTTTTAA-G---T-AA-GATAAA-T-A-A----CTCG-A-TGAT-GTTG-AAT-A-CTTCA-------------------------GAAAA-A-A-CATC--CC-C--AACTCGG-GCC-TTT---GA-CC------CTC----GG--T--AG-TGAT-G-T--TTTCT-CTG-------------------------AACTAT-TCAACACCA-T-CAA-TTTGTTTA-TCCATTA
gi|1 : ATAT-GTCTTAATGTTGT-AATGGTATA-----A----CGAG-AATGGT-GTTG-AAT-A-GTTCAA------------------------GAGAA-A-G-CATG--CCAC------C-C-GCG-AGG---GGGCCGAAG--CCC----GAGTT--GG-GGATGG-CTATTC-T-CTG-------------------------AACT-CATCAACA-CA-T-CTCGTTA
gi|9 : aacttcttagagatataatttgttgtaaaaaaattcatcaactgtatccattccgtactttcatggatgaattaagagcacgatgtaaggcacccttattagacatctacctgtaatagcatgaatagtaccatgcaacagcaccatatcttgtcacctatgttcagatgctcgctttgtatttcagcaagtgaaagtttgaattggtttattcagcaggcaggccccgttagggaaatttttaaggtaatataATAT-ATTTTAA-----------ATAAA-T-A-A----CGAA-A-TAGC-GTTG-AAT-A-GTCCA-------------------------AAGAA-A-G-CATCG-CCACCGAA----G-GCA-T-----------------AA----GG--T--GG-GGAT-G-T--TTTCT-CTG-------------------------AACTAT-TCAACACCA-T-Ca
gi|8 : taagataaataacttATATATTTTTAA-----------ATAAA-T-A-A----CGAA-A-TAGC-GTTG-AAT-A-GTCCA-------------------------AAGAA-A-G-CATCG-CCACCGAA----G-GCA-T-----------------AA----GG--T--GG-GGAT-G-T--TTTCT-CTG-------------------------AACT-TATCAACACCA-T-Cgaatgggatcgggcagtaggcactgcctatttcagcc
gi|9 : taagataaataacttT-AA-GATAAA-T-A-A----CTTG-A-TGGT-GTTG-AAT-A-GTTCA-------------------------GAGAA-A-A-CATC--CC-C--ACCTT-ATGCC-TT-----------------C----GG--T--GG-CGAT-G-C--TTT-C-TTTG------------------------GACTAT-TCAACGCTA-T-TTC-GTTATTTAgaatgggatcgggcagtaggcactgcctatttcagcc
gi|8 : T-AA-GATAAA-T-A-A----CTTG-A-TGGT-GTTG--AT-AAGTTCA-------------------------GAGAA-A-A-CATC--CC-C--ACCTT-ATGCC-TTC---GG--------------------T--GG-CGAT-G-C--TTT-C-TTTG------------------------GACTAT-TCAACGCTA-T-TTC-GTTATTTAtttaaaatatatgaatgggatcgggcagtaggcactgcctatttcagcc
gi|2 : A-AATAAA-T-A------CGAGCA-TGGT-GTTG-AAT-A-GTTCA-------------------------GAGAA-A-G-CATCGGCCACG-AA--G-G-GCC-GAA---GG-CC------CGA----GT--T--GG-GGAT-G-C---TT-T-CTG-------------------------AACTATTTCAAC-CCA-T-CTC-tttaaaaatatatgaatgggatcgggcagtaggcactgcctatttcagcc
gi|5 : tttaatttgtgtaaagaaaaatttcatcaactgtatccatccgtactttcatgggaagaataagagcacgtgatagagacctatatagacaggttactactgttgaatgagatgaatggtaccatgcaacagacagtatttgtgaactgattgtcagagaagtagtgctcgctttgtatttcagcaagtgaatagtgaatggttttttatcagcaggggccccggtttagggaaattttttaagtagatatattacac-GATAAA-T-A-A----CTTG-A-TGGT-GTT-GAAT-A-GTTCANNNNNNNNNNNNNNNNNNNNNNNNNGAGAA-A-G-CATCG-CCAC------C-G-A-----T---GGACCGAAAGGCCG----AG--TTGGG-AGAT-G-C---TT-T-CTCAT-----------------------AACTAT-TCAACATCA-cgtgattacta
gi|18 : tggaaggaactctttatagacagtatgcactgttgaataaatgaatggtgccatgcaacagaacctatttgtctacctggttgtcatcgagtgctcgtttgtatttcatagcaagtgaatagttgaatttgattttcatagcagcgggctcgttaaggaatttttcagtaaggataaataactcgat-GATAAA-T-A-A----TAAG-A-TGGT-GTTGTA-T-A-GTTCA-------------------------TAGAA-A-G-CATCT-CCAC--AAcatt
gi|19 : taatggATAAA-T-A-A----CGAG-A-TGGT-GTTG-AAT-A-GTTCA-------------------------GAGAA-A-G-CATCG-CCAC--a
gi|14 : ATAAA-T-A-A----CGAG-A-TGGT-GTT-GAAT-A-GTTTA-------------------------GAGAA-A-A-CATT--Ccgagg
gi|10 : aaggcG-A-TGGT-GTTG-AAT-A-GTTCA-------------------------GAGAA-A-A-CAT----CAC--TAC-C-G-AGG-GTCAAAGG-CC------CGA----GT--T--GG-GGAT-GTT--TTT-T-CTGA------------------------AG-TAT-TCAACATCA-T-Ctctccaagggacggaggcccgag
gi|20 : ggaattgttttaagtaagataaataactc-TGGT-GTTG-AAT-A-GTTTA-------------------------GAGAA-A-A-CATT--Caatttgtttatccatta
gi|14 : CTC-G-GGC-CTC---CGTCC------CTT----GG--A--GA-GAAT-G-T--TTTCT-CT-A------------------------AACTAT-TCAACACCA-T-CTC-GTTATTTAtctccga
gi|19 : aaggcaC------CTC----GG--T--GG-CGAT-G-C--TTTCT-CTG-------------------------AACTAT-TCAACACCA-T-CTC-GTTATTTA
gi|18 : aG--T--GG-AGAT-G-C--TTTCT-ATGA------------------------A-CTATA-CAACACCA-T-CTT-ATTATTTATCCCATTA
gi|11 : --T--GG-GAAT-G-C--TTT-TTCTGA------------------------A-CCAT-TCAACACCA-T-TTC-GTTATTTAaaa
gi|7 : tatatttcagcaagttaatagttgaatggtttttatcagcaggggtccgtttagggaaattttaagtaagaGGT-G-T--TTTCT-CTGA------------------------A-CTAT-TCAACACCA-T-Cactcgagccttc
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): CAATTTAAACAATATTTTATTCACAAAGAAATATGTGAATGGGATCAGGCAACAGGCATTGCCTATGTTAGT
Unaligned ( gi|13 ): TTTCAACAATATTTTATTAACAAAGAAATATGTGAATAAGATCGGGCAGATGGCATTTCCTTTGTTAGCCC
Unaligned ( gi|15 ): TATTTAAACAATATTTTATTCACAATATGTAATGGGATCGGGGCAGCAGGGCATGCCTATTATTAAGC
Unaligned ( gi|16 ): TTTTAACAATATTTTCAAATAATATGAATGGGGTCGGGTAGCAGGCACAGCCTATTTTAGCCCTCT
Unaligned ( gi|17 ): TTTTTTTATGTACCTTCAAAAGAAAATTGTGAATGGGATCGGGCAGCAGGCATTGCC
Alignments
lowQualScore : 111 1 222 1 1111 111 111 111 11 11 1 111 33333333 1 1 111 11 11 22222222222222 1111111111 22 22 3 11111 44444444444444444444444444
lowQualScore : 1 333 3 99 222 6 9 4444 6 3 111 5 5 1 5 3 2 77 888 222 5 33 5 1 5 44 888 9 5 5 5 777 4 77 22222222 7 5 0 333 999 11 11 5 66 44444444444444 5 9999999999 5 5 55 33 3 3 3 3 3 7777 44 3 3 00 3 3 4 666 0 3 4 4 8 4 5 55 00000 44 22222222222222222222222222 8 3 3 4 8
lowQualScore : . ... . .. ... . . .... . . ... . . . . . . .. ... ... . .. . . . .. ... . . . . ... . .. ........ . . . ... ... .. .. . .. .............. . .......... . . .. .. . . . . . .... .. . . .. . . . ... . . . . . . . .. ..... .. .......................... . . . . .
lowQualScore : 0 000 3 22 888 7 2 2222 7 2 777 7 7 0 7 0 1 99 666 111 0 66 7 4 7 44 000 0 7 7 7 999 0 99 11111111 1 7 0 888 888 99 99 0 99 00000000000000 0 8888888888 0 0 44 00 6 6 6 6 6 7777 66 6 6 11 6 6 0 000 8 2 4 4 9 4 0 44 00000 66 33333333333333333333333333 8 6 6 0 1
consensus : TTTAATTTG-T-GTAAAGAAAA-TTTCA--TCAACTGTATCCA-T-TCCGTACTTTCATG----GAATGAA-TTGAG---AGCACG-TG-TAAGG-ACCCTTNT--ATAGACAG-T-TACTA-CTGTTGAAT--AG-ATGAATGGTACCATGCAA-CAGNACC--ATATTCTGTC-A-C-CTTGACTGTTCA--GA-G------TGCTCGC-TT-GTA-TT---CAGCAAGTGAAATAG--TTGAA--T-GGTT--TT----T-A----T--CA-GCA--GG--C---CCCG-TT-AAGGGAATATTTTTTAAGGT-AA-GAT-AAAT-A-A----CTCGA-TGGT-GTTGGAAT-A-GTTCAGAGAA-A-G-CATCCC-CAACTC-G-G-CC-TTCGG-CCC-TC-----GGTGG-CGATGCTTTCTCTGA------------------------AACTAT-TCAACACCA-T-CTCGTTATTTATTCCATTA
Reference ( family-981 ) : TTTNATTTG-T-GTAAAGAAAA-TTTCA--TCAACCGTATCCA-TGTCCGTACTTTCATG----GAATGAA-TTGAG---AGCACG-TG-TANGG-ACCCTTTT--ATAGACAG-T-TACTA-CTGTTGAAT--AG-ATGAACGGTACCATGCAA-CAGNACC--ATATTTTGTC-A-C-CTTGACTGTTCA--GA-G------TGCTCGC-TT-GTA-TT---CAGCAAGTGAAATAG--TTGAA--T-GGTT--TT----T-A----T--CA-GCA--GG--C---CCCG-TT-AAGGGAATATTTTTTAAGGT-AA-GAT-AAAT-A-A----CGNGA-TGGT-GTTGGAAT-A-GTTCAGAGAA-A-G-CATCCCACAACTC-G-G-CC-TTCGG-CCC-NC-----GGTGG-NGATGCTTTCTCTGA------------------------AACTAT-TCAACACCA-T-CTCGTTATTTATTCCATTA
gi|1 : TAATTTG-TTGTAAAAAAA---TTCA--TCAACTGTATCCA-T-TCCGTACTTTCATG----GA-TGAA-TTAAG---AGCACGATG-TAAGGCACCCTTAT---TAGACAT-C-TAC---CTGT--AAT--AGCATGAATAGTACCATGCAA-CAGCACC--ATATCTTGTC-A-C-CT--A-TGTTCA--GA--------TGCTCGCTTT-GTATTT---CAGCAAGTGAA--AGT-TTGAAT-T-GGTTTATT----C-A----G--CAGGCA--GG--C---CCCG-TT-AGGGAAA---TTTTTAAGGT-AA-TAT---AT-A-A----CGAGA-T-GT-GTTG--ATGA-GTTCAGAGAATA-GCCATCCC-CAACTC-G-G-GC-TTCGG-CCC-CCTCGCGGGTGG-C-ATGCTTTCTCTTG------------------------AACTAT-TCAACACCATT-CTCGTTA--TA--CCATTA
gi|10 : aacttcttagagataGGAAT-TGTTTTAAG-T-AA-GAT-AAAT-A-A----CTCGA-TGAT-GTTG-AAT-A-CTTCAGAAAA-A-A-CATCCC-CAACTC-G-GGCC-TTTGA-CCC-TC-----GGTAG-TGATGTTTTCTCTG-------------------------AACTAT-TCAACACCA-T-CAATTTGTTTA-TCCATTAcaacattaagacatata
gi|11 : -TT---CAGCAAGTTAA-TAG--TTGAA--T-GGTT--TT----T-A----T--CA-GCAG-GG--G---TCCG-TT-TAGGGAA-ATTTT---AAGT-AA-GAT-AAAT-A-A----CGAAA-TGGT-GTT-GAAT-G-GTTCAGAAAA-A-G-CATTCC-CAACTC-GAG-CC-TTC
gi|14 : tatatCTC-G-GGCC-TCCGT-CCC-TT-----GGAGA-GAATGTTTTCTCT-A------------------------AACTAT-TCAACACCA-T-CTCGTTATTTATGCC
gi|18 : aaGTGG-AGATGCTTTCTATGA------------------------A-CTAT-ACAACACCA-T-CTTATTATTTATCCCATTA
gi|19 : CC-TC-----GGTGG-CGATGCTTTCTCTGA------------------------A-CTAT-TCAACACCA-T-CTCGTTATTTATaaa
gi|2 : TTTAATTTG-T-GTAAAGAAAAATTTCA--TCAACTGTATCCA-T--CCGTACTTTCATG----GGAAGAA-T-AAG---AGCACG-TGATAGAG-ACC--TAT--ATAGACAGGT-TACTA-CTGTTGAATG-AG-ATGAATGGTACCATGCAA-CAG-ACA--GTATTT-GTG-A-A-CT-GATTGT-CA--GA-GAAGTAGTGCTCGC-TTTGTA-TTT--CAGCAAGTGAA-TAG--T-GAA--T-GGTT--TT----TTA----T--CA-GCA--GGGGC---CCCGGTT-TAGGGAA-ATTTTTTAAG-T-A--GAT-ATATTACA----CGAGA-TGG--GTTGAAAT-A-GTTCAGA--A-A-G-CATCCC-CAACTCGG-G-CC-TTCGG-CCC-TT-----CGTGGCCGATGCTTTCTCTG-------------------------AACTAT-TCAACACCA-TGCTCG-TATTTATTTCGT
gi|20 : C-----GGAGA-GAATGTTTTCTCT-A------------------------AACTAT-TCAACACCA-gattacta
gi|3 : TTTAATTTG-T-GTAAAGAAAA-TTTCA--TCA-CTGTATCCA-T-TCCGTACTATCATG----GAATGAA-TTAAG---AGCATC-TG-TAAGG-ACCCTTAT--ATAGACAG-T-TACTA-CTGT-GAAT--AG-ATGAATGGTACCATGCAA-CAGGACCCAATATTTTGTC-AAC-CTTGATTGTTCA--GA-G------TGCTCGC-TT-GTA-TT---CAGCAAGTGAAATAG--TTGAA--T-GGTT--TT------A----T---A-GCA--GG--C---CCCT-TTTAAGGGAATATTTTTTAAGGT-AA-GAT-ATAT-A-A----CGAGA-TGGT-GTTGGAAT-A-GTTCAGAGAA-A-G-CATCCCACAACTC-G-G-CC-TTCGGCCCC-CC-----GGTGG-CGATGCTTT-TCTGA------------------------AACTATGTCAACACCA-T-CTCTTAATTTAGTCCATTAa
gi|4 : TTTGATTTG-A-GTAAAGACAA-TTTCA--TTAACTG-ATCGAATTTCCGTATTTT----------ATG-----GAC---AGCTTG-TG-TAAGA-GCCATTTTCCATACACTG-T-TACT----GTTGAATCAAT-ATGAATGATTCCATCCGA-CA-AACC--ATA-TCTATC-G-C-C-TGACTGTTTA--GA--------T--------------TT---TAGCAAGTG-AATAG--TTGAA--T-GGTT--TC----T-ATATGT--CA-GCAAGGG--T---TCCG-TT-AAGGGAAT-TATTATAAGG--AA-CAC--AAT-A-A----CTCGA-TGATCGCT-GAAT-A-GTTC
gi|5 : aattgaattcttctcaggttttgaattcccgattcattgagacgtatcatatttacaatagctaatt-TG-GAAGG-AACTCTTT--ATAGACAG-TATGC-A-CTGTTGAAT--AA-ATGAATGGTGCCATGCAA-CAGAACC---TA-TTTGTCTA-C-C-TGGTTG-TCATCGA-G------TGCTCGT-TT-GTA-TTTCATAGCAAGTG-AATAG--TTGAATTT-GATT--TT----C-A----TAGCA-GCG--GG------CTCG-TT-AAGGA---ATTTTTCA--GT-AAGGAT-AAAT-A-A----CTCGATTGAT-GTT-GAAT-A-GTTATGAGAA-A-G-CATCTCCCAACTC-G-G-CCTTTCGG-TCCATC-----GGTGG-CGATGCTTTCTCNNNNNNNNNNNNNNNNNNNNNNNNNTGAACTAT-TCAACACCA-T-CAAGTTATTTA-TCCATT
gi|6 : TTTCATTTGAT-GTAAAGAAAAGTTCCAGCTCAACA--ATCCA-TGTCCCTACTTTCATGTTTCAAATGAAATTGAGCAAGGCACG-TG-TATGG-ACCCTTTT--ATAGACAA----ACTACCTGTTGAAT--AG-AT-AACGGTACCATGCAACCACTACC--ATA-TCTGTC-A-CGCTT-ACTATTCA--GACGT-----TGCTTGCATT-GTA-TT---TCGCAAGTGAAATAGAAATGAA--TCGGTT--TTTTTCT-AT---T--CA-GCA--AG--CGTTCCTG-TT-AAGGAACT-TTTTTTAAAGTCAA-GATAAAAT-A-AACTCCGCAT-TGGT-GCTTGAAT-A-GTTCAGAGAA-ACA-CACCCC
gi|7 : TTTCATTTG-A-GTAAAGAAAA-TTCCA--TCAACA--ATCCA-TGTCCCTACTTTCATG----AAATGAA-TTGAG---AGCACG-TG-TATGG-ACCCTTTT--ATAGACAG---AACTA-CTGTTGAAT--AG-ATGAACGGTACCATGCAA-CA-TACC--ATA-TCTGTC-A-C-CTT-ACTATTCA--GA-G------TGCTTGCATT-GTATTT---CAGCAAGTG-AATAG--TTGAA--T-GGTT--TC----T-A----T--CA-GCAAGGG--T---TCCG-TT-AAGGGAAT-TTTTTTAA-GT-AA-GAT-AAAT-A-A----CTCGA-TGGT-GTT-GAAT-A-GTTCAGAGAA-A-A-CACCCC
gi|8 : T-AA-GAT-AAAT-A-A----CTTGA-TGGT-GTTG--AT-AAGTTCAGAGAA-A-A-CATCCC-CA---------CC-TTATG-CCT-TC-----GGTGG-CGATGCTTTCTTTGG------------------------A-CTAT-TCAACGCTA-T-TTCGTTATTTAT
gi|9 : T-AA-GAT-AAAT-A-A----CTTGA-TGGT-GTTG-AAT-A-GTTCAGAGAA-A-A-CATCCC-CA---------CC-TTATG-CCT-TC-----GGTGG-CGATGCTTTCTTTGG------------------------A-CTAT-TCAACGCTA-T-TTCGTTATTTATtaaaaatatatgaatgggatcgggcagtaggcactgcctatttcagcc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAATTTAAACAATATTTTATTCACAAAGAAATATGTGAATGGGATCAGGCAACAGGCATTGCCTATGTTAGT
Unaligned ( gi|13 ): TTTCAACAATATTTTATTAACAAAGAAATATGTGAATAAGATCGGGCAGATGGCATTTCCTTTGTTAGCCC
Unaligned ( gi|15 ): TATTTAAACAATATTTTATTCACAATATGTAATGGGATCGGGGCAGCAGGGCATGCCTATTATTAAGC
Unaligned ( gi|16 ): TTTTAACAATATTTTCAAATAATATGAATGGGGTCGGGTAGCAGGCACAGCCTATTTTAGCCCTCT
Unaligned ( gi|17 ): TTTTTTTATGTACCTTCAAAAGAAAATTGTGAATGGGATCGGGCAGCAGGCATTGCC
Alignments
lowQualScore : 111 1 11 1111 111111 111 111 11 11 111 1 11 22222222 1 1 1 11 222222222222 11 111111 22 111 22 11111 44444444444444444444444444
lowQualScore : 1 333 3 99 33 3333 999999 6 3 111 5 5 0 5 3 1 77 888 66 5 33 5 5 44 888 444 1 5 99 4 77 66666666 5 7 5 0 99999 3 5 5 66 5 11 66 333333333333 5 88 222222 5 5 88 33 3 3 3 3 555 3 00 3 3 4 666 4 4 3 4 4 8 4 5 4 00000 3 88888888888888888888888888 3 3 4 8
lowQualScore : . ... . .. .. .... ...... . . ... . . . . . . .. ... .. . .. . . .. ... ... . . .. . .. ........ . . . . ..... . . . .. . .. .. ............ . .. ...... . . .. .. . . . . ... . .. . . . ... . . . . . . . . . ..... . .......................... . . . .
lowQualScore : 5 000 3 22 88 5555 333333 7 2 777 7 7 6 7 0 0 99 666 44 7 66 7 7 44 000 000 4 7 99 0 99 44444444 7 1 7 0 88888 2 5 0 99 0 99 99 111111111111 0 88 888888 0 0 11 00 6 6 6 6 000 6 11 6 6 0 000 0 0 2 4 4 9 4 0 0 00000 6 55555555555555555555555555 6 6 0 1
consensus : TTTAATTTG-T-GTAAAGAAAA-TTTCA--TCAACTGTATCCA--T-TCCGTACTTTCATG----GAATGAA-TTGAG---AGCACG-TG-TAAGG-ACCCTTNT--ATAGACAG-T-TACTAC-TGTTGAAT--AG-ATGAATGGTACCATGCAAC-AGNACC--ATATTCTGTC-AC-CTTGACTGT--TCAGA-G------T-GCTCGC-TT-GTA-TT-C---AGCAAGTGAAATAG-T--TGAA-T--GGTT--TTT----A----T--CA-GCA--GG--C---CCC-G-TTAAGGGAAT-TTTTTTAAGGT-AAG-ATAAA-TAA-CTCGA---TGGT-GTTGGAAT-A-GTTCAGAGAA-A-G-CATC-CC-CAACTC-G-G-CC-TTCGG-CCC-TC-----GGTGG-CGATGCTTTCTCTGA------------------------AACTAT-TCAACACCA-T-CTCGTTATTTATTCCATTA
Reference ( family-981 ) : TTTAATTTG-T-GTAAAGAAAA-TTTCA--TCAACTGTATCCA--T-TCCGTACTTTCATG----GAATGAA-TTGAG---AGCACG-TG-TAAGG-ACCCTTNT--ATAGACAG-T-TACTAC-TGTTGAAT--AG-ATGAATGGTACCATGCAAC-AGNACC--ATATTCTGTC-AC-CTTGACTGT--TCAGA-G------T-GCTCGC-TT-GTA-TT-C---AGCAAGTGAAATAG-T--TGAA-T--GGTT--TTT----A----T--CA-GCA--GG--C---CCC-G-TTAAGGGAATATTTTTTAAGGT-AAG-ATAAA-TAA-CTCGA---TGGT-GTTGGAAT-A-GTTCAGAGAA-A-G-CATC-CC-CAACTC-G-G-CC-TTCGG-CCC-TC-----GGTGG-CGATGCTTTCTCTGA------------------------AACTAT-TCAACACCA-T-CTCGTTATTTATTCCATTA
gi|1 : TAATTTG-TTGTAAAAAAA---TTCA--TCAACTGTATCCA--T-TCCGTACTTTCATG----G-ATGAA-TTAAG---AGCACGATG-TAAGGCACCCTTAT---TAGACAT-C-TAC--C-TGT--AAT--AGCATGAATAGTACCATGCAAC-AGCACC--ATATCTTGTC-AC-CT--A-TGT--TCAGA--------T-GCTCGCTTT-GTATTT-C---AGCAAGTGAA--AGTT--TGAATT--GGTTTATTC----A----G--CAGGCA--GG--C---CCC-G-TTAGGGAAA---TTTTTAAGGT-AAT-AT--A-TAA-CGAGA---T-GT-GTTG--ATGA-GTTCAGAGAATA-GCCATC-CC-CAACTC-G-G-GC-TTCGG-CCC-CCTCGCGGGTGG-C-ATGCTTTCTCTTG------------------------AACTAT-TCAACACCATT-CTCGTTA--TA--CCATTA
gi|10 : aacttcttagagataGGAAT-TGTTTTAAG-T-AAG-ATAAA-TAA-CTCGA---TGAT-GTT-GAAT-A-CTTCAGAAAA-A-A-CATC-CC-CAACTCGG-G-CC-TTTGA-CCC-TC-----GGTAG-TGATGTTTTCTCTG-------------------------AACTAT-TCAACACCA-T-CAATTTGTTTA-TCCATTAcaacattaagacatata
gi|11 : -TT-C---AGCAAGTTAA-TAG-T--TGAA-T--GGTT--TTT----A----T--CA-GCAG-GG--G---TCC-G-TTTAGGGAA-ATTTT---AAGT-AAG-ATAAA-TAA-CGAAA---TGGT-GTT-GAAT-G-GTTCAGAAAA-A-G-CATT-CC-CAACTC-GAG-CC-TTC
gi|14 : tatatCTC-G-GGCC-TCCGT-CCC-TT-----GGAGA-GAATGTTTTCTCT-A------------------------AACTAT-TCAACACCA-T-CTCGTTATTTATGCC
gi|18 : aaGTGG-AGATGCTTTCTATGA------------------------A-CTAT-ACAACACCA-T-CTTATTATTTATCCCATTA
gi|19 : CC-TC-----GGTGG-CGATGCTTTCTCTGA------------------------A-CTAT-TCAACACCA-T-CTCGTTATTTATaaa
gi|2 : TTTAATTTG-T-GTAAAGAAAAATTTCA--TCAACTGTATCCA--T--CCGTACTTTCATG----GGAAGAA-T-AAG---AGCACG-TGATAGAG-ACC--TAT--ATAGACAGGT-TACTAC-TGTTGAATG-AG-ATGAATGGTACCATGCAAC-AG-ACA--GTATT-TGTG-AA-CT-GATTGT---CAGA-GAAGTAGT-GCTCGC-TTTGTA-TTTC---AGCAAGTGAA-TAG-T---GAA-T--GGTT--TTTT---A----T--CA-GCA--GGGGC---CCC-GGTTTAGGGAA-ATTTTTTAAG-T-A-G-ATATA-TTA-CACGAGA-TGG--GTTGAAAT-A-GTTCAGA--A-A-G-CATC-CC-CAACTC-G-GGCC-TTCGG-CCC-TT-----CGTGGCCGATGCTTTCTCTG-------------------------AACTAT-TCAACACCA-TGCTCG-TATTTATTTCGT
gi|20 : -TC-----GGAGA-GAATGTTTTCTCT-A------------------------AACTAT-TCAACACCA-gattacta
gi|3 : TTTAATTTG-T-GTAAAGAAAA-TTTCA--TCA-CTGTATCCA--T-TCCGTACTATCATG----GAATGAA-TTAAG---AGCATC-TG-TAAGG-ACCCTTAT--ATAGACAG-T-TACTAC-TG-TGAAT--AG-ATGAATGGTACCATGCAAC-AGGACCCAATATTTTGTCAAC-CTTGATTGT--TCAGA-G------T-GCTCGC-TT-GTA-TT-C---AGCAAGTGAAATAG-T--TGAA-T--GG-T--TTT----A----T---A-GCA--GG--C---CCCTT-TTAAGGGAATATTTTTTAAGGT-AAG-ATATA-TAA-CGAGA---TGGT-GTTGGAAT-A-GTTCAGAGAA-A-G-CATC-CCACAACTC-G-G-CC-TTCGGCCCC-CC-----GGTGG-CGATGCTTT-TCTGA------------------------AACTATGTCAACACCA-T-CTCTTAATTTAGTCCATTA
gi|4 : TTTGATTTG-A-GTAAAGACAA-TTTCA--TTAACTG-ATCGAATT-TCCGTATTTT----------ATG-----GAC---AGCTTG-TG-TAAGA-GCCATTTTCCATACACTG-T-TACT----GTTGAATCAAT-ATGAATGATTCCATCCGAC-A-AACC--ATA-TCTATC-GC-C-TGACTGT--TTAGA--------T---------------TT-T---AGCAAGTG-AATAG-T--TGAA-T--GGTT--TCT----ATATGT--CA-GCAAGGG--T---TCC-G-TTAAGGGAAT-TATTATAAGG--AAC-AC-AA-TAA-CTCGA---TGATCGCT-GAAT-A-GTTC
gi|5 : aattgaattcttctcaggttttgaattcccgattcattgagacgtatcatatttacaatagctaatt-TG-GAAGG-AACTCTTT--ATAGACAG-TATGC-AC-TGTTGAAT--AA-ATGAATGGTGCCATGCAAC-AGAACC---TATT-TGTCTAC-CT-GGTTGTCATC-GA-G------T-GCTCGT-TT-GTA-TT-TCATAGCAAGTGAA-TAG-T--TGAA-TTTGATT--TTC----A----TAGCA-GCG--GG--C---TC--G-TTAAGGAA---TTTTTCA--GT-AAGGATAAA-TAA-CTCGAT--TGAT-GTT-GAAT-A-GTTATGAGAA-A-G-CATCTCC-CAACTC-G-G-CCTTTCGG-TCCATC-----GGTGG-CGATGCTTTCTCNNNNNNNNNNNNNNNNNNNNNNNNNTGAACTAT-TCAACACCA-T-CAAGTTATTTA-TCCATT
gi|6 : TTTCATTTGAT-GTAAAGAAAAGTTCCAGCTCAACA--ATCCA--TGTCCCTACTTTCATGTTTCAAATGAAATTGAGCAAGGCACG-TG-TATGG-ACCCTTTT--ATAGACAA----ACTACCTGTTGAAT--AG-AT-AACGGTACCATGCAACCACTACC--ATAT-CTGTC-ACGCTT-ACTAT--TCAGACG------TTGCTTGCATT-GTA-TT-T---CGCAAGTGAAATAG-AAATGAA-TC-GGTT--TTTTTCTA----TT-CA-GCA--AG--CGTTCCT-G-TTAAGGAACT-TTTTTTAAAGTCAAG-ATAAAATAAACTCCGCATTGGT-GCTTGAAT-A-GTTCAGAGAA-ACA-CACC-CC-
gi|7 : TTTCATTTG-A-GTAAAGAAAA-TTCCA--TCAACA--ATCCA--TGTCCCTACTTTCATG----AAATGAA-TTGAG---AGCACG-TG-TATGG-ACCCTTTT--ATAGACAG---AACTAC-TGTTGAAT--AG-ATGAACGGTACCATGCAAC-A-TACC--ATA-TCTGTC-AC-CTT-ACTAT--TCAGA-G------T-GCTTGCATT-GTATTT-C---AGCAAGTG-AATAG-T--TGAA-T--GGTT--TCT----A----T--CA-GCAAGGG--T---TCC-G-TTAAGGGAAT-TTTTTTAA-GT-AAG-ATAAA-TAA-CTCGA---TGGT-GTT-GAAT-A-GTTCAGAGAA-A-A-CACC-CC-
gi|8 : T-AAG-ATAAA-TAA-CTTGA---TGGT-GTTG--AT-AAGTTCAGAGAA-A-A-CATC-CC-CA---------CC-TTATG-CCT-TC-----GGTGG-CGATGCTTTCTTTG-------------------------GACTAT-TCAACGCTA-T-TTCGTTATTTAT
gi|9 : T-AAG-ATAAA-TAA-CTTGA---TGGT-GTTG-AAT-A-GTTCAGAGAA-A-A-CATC-CC-CA---------CC-TTATG-CCT-TC-----GGTGG-CGATGCTTTCTTTG-------------------------GACTAT-TCAACGCTA-T-TTCGTTATTTATtaaaaatatatgaatgggatcgggcagtaggcactgcctatttcagcc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAATTTAAACAATATTTTATTCACAAAGAAATATGTGAATGGGATCAGGCAACAGGCATTGCCTATGTTAGT
Unaligned ( gi|13 ): TTTCAACAATATTTTATTAACAAAGAAATATGTGAATAAGATCGGGCAGATGGCATTTCCTTTGTTAGCCC
Unaligned ( gi|15 ): TATTTAAACAATATTTTATTCACAATATGTAATGGGATCGGGGCAGCAGGGCATGCCTATTATTAAGC
Unaligned ( gi|16 ): TTTTAACAATATTTTCAAATAATATGAATGGGGTCGGGTAGCAGGCACAGCCTATTTTAGCCCTCT
Unaligned ( gi|17 ): TTTTTTTATGTACCTTCAAAAGAAAATTGTGAATGGGATCGGGCAGCAGGCATTGCC
Alignments
lowQualScore : 111 1 11 1111 111111 111 111 11 11 111 111 111111111 2 1 1 1111 11 111111111111 22 1111 1 111 22 11111 44444444444444444444444444
lowQualScore : 1 333 3 99 33 3333 999999 6 3 111 5 5 0 5 3 1 77 888 66 5 5 33 5 5 44 888 444 5 5 5 777 4 5 77 777777777 5 2 5 888 5 3 2222 11 5 5 66 888888888888 5 55 2222 0 66 1 6 3 3 3 3 55 000 3 00 3 3 4 666 4 4 3 8 4 4 4 5 4 00000 3 88888888888888888888888888 3 3 4 8
lowQualScore : . ... . .. .. .... ...... . . ... . . . . . . .. ... .. . . .. . . .. ... ... . . . ... . . .. ......... . . . ... . . .... .. . . .. ............ . .. .... . .. . . . . . . .. ... . .. . . . ... . . . . . . . . . ..... . .......................... . . . .
lowQualScore : 5 000 3 22 88 5555 333333 7 2 777 7 7 6 7 0 0 99 666 44 7 0 66 7 7 44 000 000 7 7 7 999 0 0 99 444444444 7 9 0 888 5 2 2222 99 0 0 99 111111111111 0 66 1111 0 77 0 4 6 6 6 6 00 000 6 11 6 6 0 000 0 0 2 9 4 4 4 0 0 00000 6 55555555555555555555555555 6 6 0 1
consensus : TTTAATTTG-T-GTAAAGAAAA-TTTCA--TCAACTGTATCCA--T-TCCGTACTTTCATG----GAATGAA-TTGAG---AGCACG-TG-TAAGG-ACCCTTNT--ATAGACAG-T-TACTAC-TGTTGAAT--AG-ATGAATGGTACCATGCAAC-AGNACC--ATATTCTGTC-A-C-CTTGACTGTTCA--G------A-GT-GCTCGC-TTGTATTT---CAGCAAGTGAAATAG-T--TGAA--T-GG-TT--TTT----A----T--CA-GCAGGGGC---CCC-GTTAAGGGAAT-TTTTTTAAGGT-AA-GATAAA-TAA-CTC--GA---TGGT-GTTGGAAT-A-GTTCAGAGAA-A-G-CATC-CC-CAACTC-G-G-CC-TTCGG-CCC-TC-----GGTGG-CGATGCTTTCTCTGA------------------------AACTAT-TCAACACCA-T-CTCGTTATTTATTCCATTA
Reference ( family-981 ) : TTTAATTTG-T-GTAAAGAAAA-TTTCA--TCAACTGTATCCA--T-TCCGTACTTTCATG----GAATGAA-TTGAG---AGCACG-TG-TAAGG-ACCCTTNT--ATAGACAG-T-TACTAC-TGTTGAAT--AG-ATGAATGGTACCATGCAAC-AGNACC--ATATTCTGTC-A-C-CTTGACTGTTCA--G------A-GT-GCTCGC-TTGTA-TT---CAGCAAGTGAAATAG-T--TGAA--T-GG-TT--TTT----A----T--CA-GCA--GGC---CCC-GTTAAGGGAAT-TTTTTTAAGGT-AA-GATAAA-TAA-CTC--GA---TGGT-GTTGGAAT-A-GTTCAGAGAA-A-G-CATC-CC-CAACTC-G-G-CC-TTCGG-CCC-TC-----GGTGG-CGATGCTTTCTCTGA------------------------AACTAT-TCAACACCA-T-CTCGTTATTTATTCCATTA
gi|1 : TAATTTG-TTGTAAAAAAA---TTCA--TCAACTGTATCCA--T-TCCGTACTTTCATG----G-ATGAA-TTAAG---AGCACGATG-TAAGGCACCCTTAT---TAGACAT-C-TAC--C-TGT--AAT--AGCATGAATAGTACCATGCAAC-AGCACC--ATATCTTGTC-A-C-CT--A-TGTTCA--G------A--T-GCTCGCTTTGTATTT---CAGCAAGTGAA--AGTT--TGAAT-T-GG-TTTATTC----A----G--CAGGCA--GGC---CCC-GTTAGGGAAA---TTTTTAAGGT-AA-TAT--A-TAA-CGA--GA---T-GT-GTTG--ATGA-GTTCAGAGAATA-GCCATC-CC-CAACTC-G-G-GC-TTCGG-CCC-CCTCGCGGGTGG-C-ATGCTTTCTCTTG------------------------AACTAT-TCAACACCATT-CTCGTTA--TA--CCATTA
gi|10 : aacttcttagagataGGAAT-TGTTTTAAG-T-AA-GATAAA-TAA-CTC--GA---TGAT-GTT-GAAT-A-CTTCAGAAAA-A-A-CATC-CC-CAACTCGG-G-CC-TTTGA-CCC-TC-----GGTAG-TGATGTTTTCTCTG-------------------------AACTAT-TCAACACCA-T-CAATTTGTTTA-TCCATTAcaacattaagacatata
gi|11 : -TT---CAGCAAGTTAA-TAG-T--TGAA--T-GG-TT--TTT----A----T--CA-GCAG-GGG---TCC-GTTTAGGGAAA-TTTT---AAGT-AA-GATAAA-TAA-CGA--AA---TGGT-GTT-GAAT-G-GTTCAGAAAA-A-G-CATT-CC-CAACTC-GAG-CC-TTC
gi|14 : tatatCTC-G-GGCC-TCCGT-CCC-TT-----GGAGA-GAATGTTTTCTCT-A------------------------AACTAT-TCAACACCA-T-CTCGTTATTTATGCC
gi|18 : aaGTGG-AGATGCTTTCTATGA------------------------A-CTAT-ACAACACCA-T-CTTATTATTTATCCCATTA
gi|19 : CC-TC-----GGTGG-CGATGCTTTCTCTGA------------------------A-CTAT-TCAACACCA-T-CTCGTTATTTATaaa
gi|2 : TTTAATTTG-T-GTAAAGAAAAATTTCA--TCAACTGTATCCA--T--CCGTACTTTCATG----GGAAGAA-T-AAG---AGCACG-TGATAGAG-ACC--TAT--ATAGACAGGT-TACTAC-TGTTGAATG-AG-ATGAATGGTACCATGCAAC-AG-ACA--GTATT-TGTG-A-A-C-TGATTG-TCA--GAGAAGTA-GT-GCTCGCTTTGTATTT---CAGCAAGTG-AATAG----TGAA--T-GGTTT--TTT----A----T--CA-GCAGGGGC---CCCGGTTTAGGGAAA-TTTTTTAA-GT--A-GATATA-TTA-CACGAGA---TGG--GTTGAAAT-A-GTTC--AGAA-A-G-CATC-CC-CAACTCGG-G-CC-TTCGG-CCC-TT-----CGTGGCCGATGCTTTCTCTG-------------------------AACTAT-TCAACACCA-TGCTCG-TATTTATTTCGT
gi|20 : -TC-----GGAGA-GAATGTTTTCTCT-A------------------------AACTAT-TCAACACCA-gattacta
gi|3 : TTTAATTTG-T-GTAAAGAAAA-TTTCA--TCA-CTGTATCCA--T-TCCGTACTATCATG----GAATGAA-TTAAG---AGCATC-TG-TAAGG-ACCCTTAT--ATAGACAG-T-TACTAC-TGT-GAAT--AG-ATGAATGGTACCATGCAAC-AGGACCCAATATTTTGTC-AAC-CTTGATTGTTCA--G------A-GT-GCTCGC-TTGTA-TT---CAGCAAGTGAAATAG-T--TGAA--T-GG--T--TTT----A----T---A-GCA--GGC---CCCTTTTAAGGGAATATTTTTTAAGGT-AA-GATATA-TAA-CGA--GA---TGGT-GTTGGAAT-A-GTTCAGAGAA-A-G-CATC-CCACAACTC-G-G-CC-TTCGGCCCC-CC-----GGTGG-CGATGCTTT-TCTGA------------------------AACTATGTCAACACCA-T-CTCTTAATTTAGTCCATTA
gi|4 : TTTGATTTG-A-GTAAAGACAA-TTTCA--TTAACTG-ATCGAATT-TCCGTATTTT----------ATG-----GAC---AGCTTG-TG-TAAGA-GCCATTTTCCATACACTG-T-TACT----GTTGAATCAAT-ATGAATGATTCCATCCGAC-A-AACC--ATA-TCTATC-G-C-C-TGACTGTTTA--G------A--T--------------TT---TAGCAAGTG-AATAG-T--TGAA--T-GG-TT--TCT----ATATGT--CA-GCAAGGGT---TCC-GTTAAGGGAAT-TATTATAAGG--AA-CAC-AA-TAA-CTC--GA---TGATCGCT-GAAT-A-GTTC
gi|5 : aattgaattcttctcaggttttgaattcccgattcattgagacgtatcatatttacaatagctaatt-TG-GAAGG-AACTCTTT--ATAGACAG-TATGC-AC-TGTTGAAT--AA-ATGAATGGTGCCATGCAAC-AGAACC---TATT-TGTCTA-C-C-TGGTTG-TCATCG------A-GT-GCTCGT-TTGTA-TTTCATAGCAAGTG-AATAG-T--TGAATTT-GA-TT--TTC----A----TAGCA-GCG--GG----CTC-GTTAA-GGAAT-TTTTC---AGT-AAGGATAAA-TAA-CTC--GAT--TGAT-GTT-GAAT-A-GTTATGAGAA-A-G-CATCTCC-CAACTC-G-G-CCTTTCGG-TCCATC-----GGTGG-CGATGCTTTCTCNNNNNNNNNNNNNNNNNNNNNNNNNTGAACTAT-TCAACACCA-T-CAAGTTATTTA-TCCATT
gi|6 : TTTCATTTGAT-GTAAAGAAAAGTTCCAGCTCAACA--ATCCA--TGTCCCTACTTTCATGTTTCAAATGAAATTGAGCAAGGCACG-TG-TATGG-ACCCTTTT--ATAGACAA----ACTACCTGTTGAAT--AG-AT-AACGGTACCATGCAACCACTACC--ATAT-CTGTC-A-CGCTT-ACTATTCA--G------ACGTTGCTTGCATTGTA-TT---TCGCAAGTGAAATAG-AAATGAA--TCGG-TT--TTTTTCTA----TT-CA-GCA--AGCGTTCCT-GTTAAGGAACT-TTTTTTAAAGTCAA-GATAAAATAAACTC--CGCATTGGT-GCTTGAAT-A-GTTCAGAGAA-ACA-CACC-CC-
gi|7 : TTTCATTTG-A-GTAAAGAAAA-TTCCA--TCAACA--ATCCA--TGTCCCTACTTTCATG----AAATGAA-TTGAG---AGCACG-TG-TATGG-ACCCTTTT--ATAGACAG---AACTAC-TGTTGAAT--AG-ATGAACGGTACCATGCAAC-A-TACC--ATA-TCTGTC-A-C-CTT-ACTATTCA--G------A-GT-GCTTGCATTGTATTT---CAGCAAGTG-AATAG-T--TGAA--T-GG-TT--TCT----A----T--CA-GCAAGGGT---TCC-GTTAAGGGAAT-TTTTTTAA-GT-AA-GATAAA-TAA-CTC--GA---TGGT-GTT-GAAT-A-GTTCAGAGAA-A-A-CACC-CC-
gi|8 : T-AA-GATAAA-TAA-CTT--GA---TGGT-GTTG--AT-AAGTTCAGAGAA-A-A-CATC-CC-CA---------CC-TTATG-CCT-TC-----GGTGG-CGATGCTTTCTTTG-------------------------GACTAT-TCAACGCTA-T-TTCGTTATTTAT
gi|9 : T-AA-GATAAA-TAA-CTT--GA---TGGT-GTTG-AAT-A-GTTCAGAGAA-A-A-CATC-CC-CA---------CC-TTATG-CCT-TC-----GGTGG-CGATGCTTTCTTTG-------------------------GACTAT-TCAACGCTA-T-TTCGTTATTTATtaaaaatatatgaatgggatcgggcagtaggcactgcctatttcagcc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAATTTAAACAATATTTTATTCACAAAGAAATATGTGAATGGGATCAGGCAACAGGCATTGCCTATGTTAGT
Unaligned ( gi|13 ): TTTCAACAATATTTTATTAACAAAGAAATATGTGAATAAGATCGGGCAGATGGCATTTCCTTTGTTAGCCC
Unaligned ( gi|15 ): TATTTAAACAATATTTTATTCACAATATGTAATGGGATCGGGGCAGCAGGGCATGCCTATTATTAAGC
Unaligned ( gi|16 ): TTTTAACAATATTTTCAAATAATATGAATGGGGTCGGGTAGCAGGCACAGCCTATTTTAGCCCTCT
Unaligned ( gi|17 ): TTTTTTTATGTACCTTCAAAAGAAAATTGTGAATGGGATCGGGCAGCAGGCATTGCC
Alignments
lowQualScore : 111 1 11 1111 111111 111 1111 11 11 11 1 111 2222222222 1 11 222222222 1 111 22 11111 44444444444444444444444444
lowQualScore : 1 333 3 99 33 3333 999999 6 3 111 5 5 0 5 3 1 77 6666 66 5 33 5 5 44 888 66 1 5 777 4 77 3333333333 7 5 66 999 5 66 11 5 333333333 77 2 66 5 0 5 66 1 22 3 3 3 3 555 3 00 3 3 4 666 4 4 3 4 4 8 4 5 4 00000 3 88888888888888888888888888 3 3 4 8
lowQualScore : . ... . .. .. .... ...... . . ... . . . . . . .. .... .. . .. . . .. ... .. . . ... . .. .......... . . .. ... . .. .. . ......... .. . .. . . . .. . .. . . . . ... . .. . . . ... . . . . . . . . . ..... . .......................... . . . .
lowQualScore : 5 000 3 22 88 5555 333333 7 2 777 7 7 6 7 0 0 99 7777 44 7 66 7 7 44 000 00 4 7 999 0 99 0000000000 1 0 99 888 0 99 99 0 444444444 55 2 99 4 0 0 77 0 00 6 6 6 6 000 6 11 6 6 0 000 0 0 2 4 4 9 4 0 0 00000 6 55555555555555555555555555 6 6 0 1
consensus : TTTAATTTG-T-GTAAAGAAAA-TTTCA--TCAACTGTATCCA--T-TCCGTACTTTCATG----GAATGAA-TTGAG---AGCACG-TG-TAAGG-ACCCTTNT--ATAGACAG-T-TACTAC-TGTTGAAT--AG-ATGAATGGTACCATGCAAC-AGNACC--ATATTCTGTC-AC-CTTGACTGTTCA--GA-G------T-GCTCGC-TT-GTATTTC--AGCAAGTGAAATAG-T--TGAA--T-GGTTTTT----A----T-CAGCAGG--GGCCCC-G-TTAAGGGAAT-TTTTTTAAGGT-AA-GATAAA-TAA-CTCGA---TGGT-GTTGGAAT-A-GTTCAGAGAA-A-G-CATC-CC-CAACTC-G-G-CC-TTCGG-CCC-TC-----GGTGG-CGATGCTTTCTCTGA------------------------AACTAT-TCAACACCA-T-CTCGTTATTTATTCCATTA
Reference ( family-981 ) : TTTAATTTG-T-GTAAAGAAAA-TTTCA--TCAACTGTATCCA--T-TCCGTACTTTCATG----GAATGAA-TTGAG---AGCACG-TG-TAAGG-ACCCTTNT--ATAGACAG-T-TACTAC-TGTTGAAT--AG-ATGAATGGTACCATGCAAC-AGNACC--ATATTCTGTC-AC-CTTGACTGTTCA--GA-G------T-GCTCGC-TT-GTATTTC--AGCAAGTGAAATAG-T--TGAA--T-GGTTTTT----A----T-CAGCAGG--GGCCCC-G-TTAAGGGAAT-TTTTTTAAGGT-AA-GATAAA-TAA-CTCGA---TGGT-GTTGGAAT-A-GTTCAGAGAA-A-G-CATC-CC-CAACTC-G-G-CC-TTCGG-CCC-TC-----GGTGG-CGATGCTTTCTCTGA------------------------AACTAT-TCAACACCA-T-CTCGTTATTTATTCCATTA
gi|1 : TAATTTG-TTGTAAAAAAA---TTCA--TCAACTGTATCCA--T-TCCGTACTTTCATG----G-ATGAA-TTAAG---AGCACGATG-TAAGGCACCCTTAT---TAGACAT-C-TAC--C-TGT--AAT--AGCATGAATAGTACCATGCAAC-AGCACC--ATATCTTGTC-AC-CT--A-TGTTCA--GA--------T-GCTCGCTTT-GTATTTC--AGCAAGTGAA--AGTT--TGAAT-T-GGTTTAT---------T-CAGCAGGCAGGCCCC-G-TTAGGGAAA---TTTTTAAGGT-AA-TAT--A-TAA-CGAGA---T-GT-GTTG--ATGA-GTTCAGAGAATA-GCCATC-CC-CAACTC-G-G-GC-TTCGG-CCC-CCTCGCGGGTGG-C-ATGCTTTCTCTTG------------------------AACTAT-TCAACACCATT-CTCGTTA--TA--CCATTA
gi|10 : aacttcttagagataGGAAT-TGTTTTAAG-T-AA-GATAAA-TAA-CTCGA---TGAT-GTT-GAAT-A-CTTCAGAAAA-A-A-CATC-CC-CAACTCGG-G-CC-TTTGA-CCC-TC-----GGTAG-TGATGTTTTCTCTG-------------------------AACTAT-TCAACACCA-T-CAATTTGTTTA-TCCATTAcaacattaagacatata
gi|11 : T-ATATTTC--AGCAAGTTAA-TAG-T--TGAA--T-GGTTTTT----A----T-CAGCAGG--GG-TCC-G-TTTAGGGAAA-TTTT---AAGT-AA-GATAAA-TAA-CGAAA---TGGT-GTT-GAAT-G-GTTCAGAAAA-A-G-CATT-CC-CAACTC-GAG-CC-TTC
gi|14 : CTC-G-GGCC-TCCGT-CCC-TT-----GGAGA-GAATGTTTTCTCT-A------------------------AACTAT-TCAACACCA-T-CTCGTTATTTATGCC
gi|18 : aaGTGG-AGATGCTTTCTATGA------------------------A-CTAT-ACAACACCA-T-CTTATTATTTATCCCATTA
gi|19 : CC-TC-----GGTGG-CGATGCTTTCTCTGA------------------------A-CTAT-TCAACACCA-T-CTCGTTATTTATaaa
gi|2 : TTTAATTTG-T-GTAAAGAAAAATTTCA--TCAACTGTATCCA--T--CCGTACTTTCATG----GGAAGAA-T-AAG---AGCACG-TGATAGAG-ACC--TAT--ATAGACAGGT-TACTAC-TGTTGAATG-AG-ATGAATGGTACCATGCAAC-AG-ACA--GTATT-TGTG-AA-CT-GATTGT-CA--GA-GAAGTAGT-GCTCGC-TTTGTATTTC--AGCAAGTGAA-TAG-T---GAA--T-GGTTTTTT---A----T-CAGCAGG--GGCCCC-GGTTTAGGGAAA-TTTTTTAAG-T-A--GATATA-TTA-CACGAGA-TGG--GTTGAAAT-A-GTTCAGA--A-A-G-CATC-CC-CAACTC-G-GGCC-TTCGG-CCC-TT-----CGTGGCCGATGCTTTCTCTG-------------------------AACTAT-TCAACACCA-TGCTCG-TATTTATTTCGT
gi|20 : -TC-----GGAGA-GAATGTTTTCTCT-A------------------------AACTAT-TCAACACCA-gattacta
gi|3 : TTTAATTTG-T-GTAAAGAAAA-TTTCA--TCA-CTGTATCCA--T-TCCGTACTATCATG----GAATGAA-TTAAG---AGCATC-TG-TAAGG-ACCCTTAT--ATAGACAG-T-TACTAC-TG-TGAAT--AG-ATGAATGGTACCATGCAAC-AGGACCCAATATTTTGTCAAC-CTTGATTGTTCA--GA-G------T-GCTCGC-TT-GTA-TTC--AGCAAGTGAAATAG-T--TGAA--T-GG-TTTT----A----T--AGCA----GGCCCCTT-TTAAGGGAATATTTTTTAAGGT-AA-GATATA-TAA-CGAGA---TGGT-GTTGGAAT-A-GTTCAGAGAA-A-G-CATC-CCACAACTC-G-G-CC-TTCGGCCCC-CC-----GGTGG-CGATGCTTT-TCTGA------------------------AACTATGTCAACACCA-T-CTCTTAATTTAGTCCATTA
gi|4 : TTTGATTTG-A-GTAAAGACAA-TTTCA--TTAACTG-ATCGAATT-TCCGTATTTT----------ATG-----GAC---AGCTTG-TG-TAAGA-GCCATTTTCCATACACTG-T-TACT----GTTGAATCAAT-ATGAATGATTCCATCCGAC-A-AACC--ATA-TCTATC-GC-C-TGACTGTTTA--G-----------------------ATTTT--AGCAAGTG-AATAG-T--TGAA--T-GGTTTCT----ATATGT-CAGCAAG--GGTTCC-G-TTAAGGGAAT-TATTATAAGG--AA-CAC-AA-TAA-CTCGA---TGATCGCT-GAAT-A-GTTC
gi|5 : aattgaattcttctcaggttttgaattcccgattcattgagacgtatcatatttacaatagctaatt-TG-GAAGG-AACTCTTT--ATAGACAG-TATGC-AC-TGTTGAAT--AA-ATGAATGGTGCCATGCAAC-AGAACC---TATT-TGTCTAC-C-TGGTTG-TCATCGA-G------T-GCTCGT-TT-GTATTTCATAGCAAGTG-AATAG-T--TGAATTT-GATTTTC----A----T--AGCAGC--GGGCTC-G-TTAA-GGAAT-TTTTC---AGT-AAGGATAAA-TAA-CTCGAT--TGAT-GTT-GAAT-A-GTTATGAGAA-A-G-CATCTCC-CAACTC-G-G-CCTTTCGG-TCCATC-----GGTGG-CGATGCTTTCTCNNNNNNNNNNNNNNNNNNNNNNNNNTGAACTAT-TCAACACCA-T-CAAGTTATTTA-TCCATT
gi|6 : TTTCATTTGAT-GTAAAGAAAAGTTCCAGCTCAACA--ATCCA--TGTCCCTACTTTCATGTTTCAAATGAAATTGAGCAAGGCACG-TG-TATGG-ACCCTTTT--ATAGACAA----ACTACCTGTTGAAT--AG-AT-AACGGTACCATGCAACCACTACC--ATAT-CTGTC-ACGCTT-ACTATTCA--GACG------TTGCTTGCATT-GTATTTC---GCAAGTGAAATAG-AAATGAA--TCGGTTTTTTTCTA----TTCAGCAAG--CGTTCCTG-TTAAGGAACT-TTTTTTAAAGTCAA-GATAAAATAAACTCCGCATTGGT-GCTTGAAT-A-GTTCAGAGAA-ACA-CACC-CC-
gi|7 : TTTCATTTG-A-GTAAAGAAAA-TTCCA--TCAACA--ATCCA--TGTCCCTACTTTCATG----AAATGAA-TTGAG---AGCACG-TG-TATGG-ACCCTTTT--ATAGACAG-A--ACTAC-TGTTGAAT--AG-ATGAACGGTACCATGCAAC-A-TACC--ATAT-CTGTC-AC-CTT-ACTATTCA--GA-G------T-GCTTGCATT-GTATTTC--AGCAAGTG-AATAG-T--TGAA--T-GGTTTCT----A----T-CAGCAAG--GGTTCC-G-TTAAGGGAAT-TTTTTTAA-GT-AA-GATAAA-TAA-CTCGA---TGGT-GTT-GAAT-A-GTTCAGAGAA-A-A-CACC-CC-
gi|8 : T-AA-GATAAA-TAA-CTTGA---TGGT-GTTG--AT-AAGTTCAGAGAA-A-A-CATC-CC-CA---------CC-TTATG-CCT-TC-----GGTGG-CGATGCTTTCTTTG-------------------------GACTAT-TCAACGCTA-T-TTCGTTATTTAT
gi|9 : T-AA-GATAAA-TAA-CTTGA---TGGT-GTTG-AAT-A-GTTCAGAGAA-A-A-CATC-CC-CA---------CC-TTATG-CCT-TC-----GGTGG-CGATGCTTTCTTTG-------------------------GACTAT-TCAACGCTA-T-TTCGTTATTTATtaaaaatatatgaatgggatcgggcagtaggcactgcctatttcagcc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAATTTAAACAATATTTTATTCACAAAGAAATATGTGAATGGGATCAGGCAACAGGCATTGCCTATGTTAGT
Unaligned ( gi|13 ): TTTCAACAATATTTTATTAACAAAGAAATATGTGAATAAGATCGGGCAGATGGCATTTCCTTTGTTAGCCC
Unaligned ( gi|15 ): TATTTAAACAATATTTTATTCACAATATGTAATGGGATCGGGGCAGCAGGGCATGCCTATTATTAAGC
Unaligned ( gi|16 ): TTTTAACAATATTTTCAAATAATATGAATGGGGTCGGGTAGCAGGCACAGCCTATTTTAGCCCTCT
Unaligned ( gi|17 ): TTTTTTTATGTACCTTCAAAAGAAAATTGTGAATGGGATCGGGCAGCAGGCATTGCC
Alignments
lowQualScore : 111 1 11 1111 111111 111 1111 11 11 11 1 111 2222222222 1 11 222222222 1 111 22 11111 44444444444444444444444444
lowQualScore : 1 333 3 99 33 3333 999999 6 3 111 5 5 0 5 3 1 77 6666 66 5 33 5 5 44 888 66 1 5 777 4 77 3333333333 7 5 66 999 5 66 11 5 333333333 77 2 66 5 0 5 66 1 22 3 3 3 3 555 3 00 3 3 4 666 4 4 3 4 4 8 4 5 4 00000 3 88888888888888888888888888 3 3 4 8
lowQualScore : . ... . .. .. .... ...... . . ... . . . . . . .. .... .. . .. . . .. ... .. . . ... . .. .......... . . .. ... . .. .. . ......... .. . .. . . . .. . .. . . . . ... . .. . . . ... . . . . . . . . . ..... . .......................... . . . .
lowQualScore : 5 000 3 22 88 5555 333333 7 2 777 7 7 6 7 0 0 99 7777 44 7 66 7 7 44 000 00 4 7 999 0 99 0000000000 1 0 99 888 0 99 99 0 444444444 55 2 99 4 0 0 77 0 00 6 6 6 6 000 6 11 6 6 0 000 0 0 2 4 4 9 4 0 0 00000 6 55555555555555555555555555 6 6 0 1
consensus : TTTAATTTG-T-GTAAAGAAAA-TTTCA--TCAACTGTATCCA--T-TCCGTACTTTCATG----GAATGAA-TTGAG---AGCACG-TG-TAAGG-ACCCTTNT--ATAGACAG-T-TACTAC-TGTTGAAT--AG-ATGAATGGTACCATGCAAC-AGNACC--ATATTCTGTC-AC-CTTGACTGTTCA--GA-G------T-GCTCGC-TT-GTATTTC--AGCAAGTGAAATAG-T--TGAA--T-GGTTTTT----A----T-CAGCAGG--GGCCCC-G-TTAAGGGAAT-TTTTTTAAGGT-AA-GATAAA-TAA-CTCGA---TGGT-GTTGGAAT-A-GTTCAGAGAA-A-G-CATC-CC-CAACTC-G-G-CC-TTCGG-CCC-TC-----GGTGG-CGATGCTTTCTCTGA------------------------AACTAT-TCAACACCA-T-CTCGTTATTTATTCCATTA
Reference ( family-981 ) : TTTAATTTG-T-GTAAAGAAAA-TTTCA--TCAACTGTATCCA--T-TCCGTACTTTCATG----GAATGAA-TTGAG---AGCACG-TG-TAAGG-ACCCTTNT--ATAGACAG-T-TACTAC-TGTTGAAT--AG-ATGAATGGTACCATGCAAC-AGNACC--ATATTCTGTC-AC-CTTGACTGTTCA--GA-G------T-GCTCGC-TT-GTATTTC--AGCAAGTGAAATAG-T--TGAA--T-GGTTTTT----A----T-CAGCAGG--GGCCCC-G-TTAAGGGAAT-TTTTTTAAGGT-AA-GATAAA-TAA-CTCGA---TGGT-GTTGGAAT-A-GTTCAGAGAA-A-G-CATC-CC-CAACTC-G-G-CC-TTCGG-CCC-TC-----GGTGG-CGATGCTTTCTCTGA------------------------AACTAT-TCAACACCA-T-CTCGTTATTTATTCCATTA
gi|1 : TAATTTG-TTGTAAAAAAA---TTCA--TCAACTGTATCCA--T-TCCGTACTTTCATG----G-ATGAA-TTAAG---AGCACGATG-TAAGGCACCCTTAT---TAGACAT-C-TAC--C-TGT--AAT--AGCATGAATAGTACCATGCAAC-AGCACC--ATATCTTGTC-AC-CT--A-TGTTCA--GA--------T-GCTCGCTTT-GTATTTC--AGCAAGTGAA--AGTT--TGAAT-T-GGTTTAT---------T-CAGCAGGCAGGCCCC-G-TTAGGGAAA---TTTTTAAGGT-AA-TAT--A-TAA-CGAGA---T-GT-GTTG--ATGA-GTTCAGAGAATA-GCCATC-CC-CAACTC-G-G-GC-TTCGG-CCC-CCTCGCGGGTGG-C-ATGCTTTCTCTTG------------------------AACTAT-TCAACACCATT-CTCGTTA--TA--CCATTA
gi|10 : aacttcttagagataGGAAT-TGTTTTAAG-T-AA-GATAAA-TAA-CTCGA---TGAT-GTT-GAAT-A-CTTCAGAAAA-A-A-CATC-CC-CAACTCGG-G-CC-TTTGA-CCC-TC-----GGTAG-TGATGTTTTCTCTG-------------------------AACTAT-TCAACACCA-T-CAATTTGTTTA-TCCATTAcaacattaagacatata
gi|11 : T-ATATTTC--AGCAAGTTAA-TAG-T--TGAA--T-GGTTTTT----A----T-CAGCAGG--GG-TCC-G-TTTAGGGAAA-TTTT---AAGT-AA-GATAAA-TAA-CGAAA---TGGT-GTT-GAAT-G-GTTCAGAAAA-A-G-CATT-CC-CAACTC-GAG-CC-TTC
gi|14 : CTC-G-GGCC-TCCGT-CCC-TT-----GGAGA-GAATGTTTTCTCT-A------------------------AACTAT-TCAACACCA-T-CTCGTTATTTATGCC
gi|18 : aaGTGG-AGATGCTTTCTATGA------------------------A-CTAT-ACAACACCA-T-CTTATTATTTATCCCATTA
gi|19 : CC-TC-----GGTGG-CGATGCTTTCTCTGA------------------------A-CTAT-TCAACACCA-T-CTCGTTATTTATaaa
gi|2 : TTTAATTTG-T-GTAAAGAAAAATTTCA--TCAACTGTATCCA--T--CCGTACTTTCATG----GGAAGAA-T-AAG---AGCACG-TGATAGAG-ACC--TAT--ATAGACAGGT-TACTAC-TGTTGAATG-AG-ATGAATGGTACCATGCAAC-AG-ACA--GTATT-TGTG-AA-CT-GATTGT-CA--GA-GAAGTAGT-GCTCGC-TTTGTATTTC--AGCAAGTGAA-TAG-T---GAA--T-GGTTTTTT---A----T-CAGCAGG--GGCCCC-GGTTTAGGGAAA-TTTTTTAAG-T-A--GATATA-TTA-CACGAGA-TGG--GTTGAAAT-A-GTTCAGA--A-A-G-CATC-CC-CAACTC-G-GGCC-TTCGG-CCC-TT-----CGTGGCCGATGCTTTCTCTG-------------------------AACTAT-TCAACACCA-TGCTCG-TATTTATTTCGT
gi|20 : -TC-----GGAGA-GAATGTTTTCTCT-A------------------------AACTAT-TCAACACCA-gattacta
gi|3 : TTTAATTTG-T-GTAAAGAAAA-TTTCA--TCA-CTGTATCCA--T-TCCGTACTATCATG----GAATGAA-TTAAG---AGCATC-TG-TAAGG-ACCCTTAT--ATAGACAG-T-TACTAC-TG-TGAAT--AG-ATGAATGGTACCATGCAAC-AGGACCCAATATTTTGTCAAC-CTTGATTGTTCA--GA-G------T-GCTCGC-TT-GTA-TTC--AGCAAGTGAAATAG-T--TGAA--T-GG-TTTT----A----T--AGCA----GGCCCCTT-TTAAGGGAATATTTTTTAAGGT-AA-GATATA-TAA-CGAGA---TGGT-GTTGGAAT-A-GTTCAGAGAA-A-G-CATC-CCACAACTC-G-G-CC-TTCGGCCCC-CC-----GGTGG-CGATGCTTT-TCTGA------------------------AACTATGTCAACACCA-T-CTCTTAATTTAGTCCATTA
gi|4 : TTTGATTTG-A-GTAAAGACAA-TTTCA--TTAACTG-ATCGAATT-TCCGTATTTT----------ATG-----GAC---AGCTTG-TG-TAAGA-GCCATTTTCCATACACTG-T-TACT----GTTGAATCAAT-ATGAATGATTCCATCCGAC-A-AACC--ATA-TCTATC-GC-C-TGACTGTTTA--G-----------------------ATTTT--AGCAAGTG-AATAG-T--TGAA--T-GGTTTCT----ATATGT-CAGCAAG--GGTTCC-G-TTAAGGGAAT-TATTATAAGG--AA-CAC-AA-TAA-CTCGA---TGATCGCT-GAAT-A-GTTC
gi|5 : aattgaattcttctcaggttttgaattcccgattcattgagacgtatcatatttacaatagctaatt-TG-GAAGG-AACTCTTT--ATAGACAG-TATGC-AC-TGTTGAAT--AA-ATGAATGGTGCCATGCAAC-AGAACC---TATT-TGTCTAC-C-TGGTTG-TCATCGA-G------T-GCTCGT-TT-GTATTTCATAGCAAGTG-AATAG-T--TGAATTT-GATTTTC----A----T--AGCAGC--GGGCTC-G-TTAA-GGAAT-TTTTC---AGT-AAGGATAAA-TAA-CTCGAT--TGAT-GTT-GAAT-A-GTTATGAGAA-A-G-CATCTCC-CAACTC-G-G-CCTTTCGG-TCCATC-----GGTGG-CGATGCTTTCTCNNNNNNNNNNNNNNNNNNNNNNNNNTGAACTAT-TCAACACCA-T-CAAGTTATTTA-TCCATT
gi|6 : TTTCATTTGAT-GTAAAGAAAAGTTCCAGCTCAACA--ATCCA--TGTCCCTACTTTCATGTTTCAAATGAAATTGAGCAAGGCACG-TG-TATGG-ACCCTTTT--ATAGACAA----ACTACCTGTTGAAT--AG-AT-AACGGTACCATGCAACCACTACC--ATAT-CTGTC-ACGCTT-ACTATTCA--GACG------TTGCTTGCATT-GTATTTC---GCAAGTGAAATAG-AAATGAA--TCGGTTTTTTTCTA----TTCAGCAAG--CGTTCCTG-TTAAGGAACT-TTTTTTAAAGTCAA-GATAAAATAAACTCCGCATTGGT-GCTTGAAT-A-GTTCAGAGAA-ACA-CACC-CC-
gi|7 : TTTCATTTG-A-GTAAAGAAAA-TTCCA--TCAACA--ATCCA--TGTCCCTACTTTCATG----AAATGAA-TTGAG---AGCACG-TG-TATGG-ACCCTTTT--ATAGACAG-A--ACTAC-TGTTGAAT--AG-ATGAACGGTACCATGCAAC-A-TACC--ATAT-CTGTC-AC-CTT-ACTATTCA--GA-G------T-GCTTGCATT-GTATTTC--AGCAAGTG-AATAG-T--TGAA--T-GGTTTCT----A----T-CAGCAAG--GGTTCC-G-TTAAGGGAAT-TTTTTTAA-GT-AA-GATAAA-TAA-CTCGA---TGGT-GTT-GAAT-A-GTTCAGAGAA-A-A-CACC-CC-
gi|8 : T-AA-GATAAA-TAA-CTTGA---TGGT-GTTG--AT-AAGTTCAGAGAA-A-A-CATC-CC-CA---------CC-TTATG-CCT-TC-----GGTGG-CGATGCTTTCTTTG-------------------------GACTAT-TCAACGCTA-T-TTCGTTATTTAT
gi|9 : T-AA-GATAAA-TAA-CTTGA---TGGT-GTTG-AAT-A-GTTCAGAGAA-A-A-CATC-CC-CA---------CC-TTATG-CCT-TC-----GGTGG-CGATGCTTTCTTTG-------------------------GACTAT-TCAACGCTA-T-TTCGTTATTTATtaaaaatatatgaatgggatcgggcagtaggcactgcctatttcagcc
blockSeqs : A AT A GC GT ATT TTTCAA A T CAA . A . C A CC GTT TA C CA . C GG CAA TT A G TTG T TC GAAGTAGT A T AT AAA . AA TT C ATATG TC G . C T G TA T AG C G A A CAT C GA . A . CA T A A G A G T C A . C NNNNNNNNNNNNNNNNNNNNNNNNTG G . G T
blockSeqs : A T G . GT TG GG . T . . . . A A . TAT TA . G . . GA G TC T . TG T . CGTT A . . AAA . . . . TTCTA C G . C T . T T GG . . . . GA . GG . . . A . . A . . G . . . . . GA . . . T
blockSeqs : G T . . G TG GA . T . . . . T T . TT TA . . . . CT A T . . TG C . GT . . . AA . . . . TA C A . T . . A T GG . . . . T . TG . . . G . . A . . . . . . . . GA . . . T
blockSeqs : C A . . . T AA . . . . . . C T . TT TA . . . . G A T . . TG T . GT . . . AA . . . . A C G . G . . A A AG . . . . . . G . . . G . . A . . . . . . . . GA . . . T
blockSeqs : C A . . . T . . . . . . . C T . A T . . . . A A C . . TT C . GT . . . AA . . . . A C A . T . . T C AG . . . . . . G . . . G . . A . . . . . . . . G . . . G
blockSeqs : . . . . T . . A . . . . T . C . . TT C . . . . . AA . . . . A . A . T . . T T G . . . . . . G . . . G . . . . . . . . . . . A . . . T
blockSeqs : . . AA . . . . A . . . . . . T T G . . . . . . G . . . A . . . . . . . . . . . G . . . T
blockSeqs : T . G . . . . . . G . . . A . . . . . . . . . A . . . .
blockSeqs : . . . . . . G . . . A . . . . . G . . . .
blockSeqs : . . . . . . G . . . G . .
blockSeqCons : N** G* GA**** TT** TA N* C* TG* GT******** ** A******** ** T* G** ***** G*************************
originalCons : TTTAATTTG-T-GTAAAGAAAA-TTTCA--TCAACTGTATCCA--T-TCCGTACTTTCATG----GAATGAA-TTGAG---AGCACG-TG-TAAGG-ACCCTTNT--ATAGACAG-T-TACTAC-TGTTGAAT--AG-ATGAATGGTACCATGCAAC-AGNACC--ATATTCTGTC-AC-CTTGACTGTTCA--GA-G------T-GCTCGC-TT-GTATTTC--AGCAAGTGAAATAG-T--TGAA--T-GGTTTTT----A----T-CAGCAGG--GGCCCC-G-TTAAGGGAAT-TTTTTTAAGGT-AA-GATAAA-TAA-CTCGA---TGGT-GTTGGAAT-A-GTTCAGAGAA-A-G-CATC-CC-CAACTC-G-G-CC-TTCGG-CCC-TC-----GGTGG-CGATGCTTTCTCTGA------------------------AACTAT-TCAACACCA-T-CTCGTTATTTATTCCATTA
finalCons : TTTAATTTGN--GTAAAGAAAA-TTTCA--TCAACTG-ATCCA--T-TCCGTACTTTCATGGA----ATGAA-TTGAG---AGCACG-TG-TAAGG-ACCCTTNT--ATAGACAGTT--ACTAC-TGTTGAAT--AG-ATGAATGGTACCATGCAAC-AN-ACC--ATATC-TGTC-AC-CTG-ACTGTTCA--GAGT--------GCTCGC-TT-GTATTTC--AGCAAGTGAAATAG-T--TGAA--T-GGTTTTTA--------T-CAGCAGG--GGCCCC-G-TTAAGGGAAT-TTTTTTAAGGT-AA-GATAAA-TAA-CTCGA---TGGT-GTTGGAAT-A-GTTCAGAGAA-AG--CATC-CC-CAACTC-G-G-CC-TTCGG-CCC-TC-----GGTGG-CGATGCTTTCTCTG-------------------------AACTAT-TCAACACCA-T-CTCGTTATTTATTCCATTA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAATTTAAACAATATTTTATTCACAAAGAAATATGTGAATGGGATCAGGCAACAGGCATTGCCTATGTTAGT
Unaligned ( gi|13 ): TTTCAACAATATTTTATTAACAAAGAAATATGTGAATAAGATCGGGCAGATGGCATTTCCTTTGTTAGCCC
Unaligned ( gi|15 ): TATTTAAACAATATTTTATTCACAATATGTAATGGGATCGGGGCAGCAGGGCATGCCTATTATTAAGC
Unaligned ( gi|16 ): TTTTAACAATATTTTCAAATAATATGAATGGGGTCGGGTAGCAGGCACAGCCTATTTTAGCCCTCT
Unaligned ( gi|17 ): TTTTTTTATGTACCTTCAAAAGAAAATTGTGAATGGGATCGGGCAGCAGGCATTGCC
Alignments
lowQualScore : 11 1 222 1111 1111 111 1111 11 111 2222222222 1 1 1 111111111 1 111 22 11111 4444444444444444444444444
lowQualScore : 1 44 3 99 222 3333 4444 6 3 111 5 5 0 5 3 1 77 6666 66 5 33 5 5 888 77 5 5 5 77 5 00 77 3333333333 7 5 66 5 777 5 66 0 5 888888888 77 2 66 5 5 4 88 6 3 3 0 3 3 55 000 3 00 3 3 4 4 4 4 4 3 8 4 4 4 5 4 00000 3 0000000000000000000000000 3 3 3 4 8
lowQualScore : . .. . .. ... .... .... . . ... . . . . . . .. .... .. . .. . . ... .. . . . .. . .. .. .......... . . .. . ... . .. . . ......... .. . .. . . . .. . . . . . . .. ... . .. . . . . . . . . . . . . . . ..... . ......................... . . . . .
lowQualScore : 5 33 3 22 777 5555 2222 7 2 777 7 7 6 7 0 0 99 7777 44 7 66 7 7 111 99 7 7 7 99 7 66 99 0000000000 1 0 99 5 222 0 99 0 0 444444444 55 2 99 4 0 4 22 4 6 6 2 6 6 00 000 6 11 6 6 0 0 0 0 0 2 9 4 4 4 0 0 00000 6 0000000000000000000000000 6 6 6 0 1
consensus : TTTAATTTGN-GTAAAGAAAA-TTTCA--TCAACTGTATCCA--T-TCCGTACTTTCATG----GAATGAA-TTGAG---AGCACG-TG-TAAGG-ACCCTTNT--ATAGACAG-T-TACTAC-TGTTGAAT--AG-ATGAATGGTACCATGCAAC-A-G-ACC--ATA-TCT-GTC-A--C-CTGACTGTTCA--GA-G------T-GCTCGC-TT-GTATTTC--AGCAAGTGAAATAGT--T-GAA--T-GG-TTTTT----A----T-CAGCAGG--GGCCCC-GTTAAGGGAAT-TTTTTTAAGGT-AA-GATAAA-TAA-CTC--GA---TGGT-GTTGGAAT-A-GTTCAGAGAA-A-GC-ATC-CC-CAACTC-G-G-CC-TTCGG-CCC-TC-----GGTGG-CGATGCTTTCTC-------------------------TG-AACTAT-TCAACACCA-T-CTCGTTATTTATTCCATTA
Reference ( family-981 ) : TTTAATTTGN-GTAAAGAAAA-TTTCA--TCAACTG-ATCCA--T-TCCGTACTTTCATG----GAATGAA-TTGAG---AGCACG-TG-TAAGG-ACCCTTNT--ATAGACAG-T-TACTAC-TGTTGAAT--AG-ATGAATGGTACCATGCAAC-A-N-ACC--ATA-TCT-GTC-A--C-CTGACTGTTCA--GA-G------T-GCTCGC-TT-GTATTTC--AGCAAGTGAAATAGT--T-GAA--T-GG-TTTTT----A----T-CAGCAGG--GGCCCC-GTTAAGGGAAT-TTTTTTAAGGT-AA-GATAAA-TAA-CTC--GA---TGGT-GTTGGAAT-A-GTTCAGAGAA-A-GC-ATC-CC-CAACTC-G-G-CC-TTCGG-CCC-TC-----GGTGG-CGATGCTTTCTC-------------------------TG-AACTAT-TCAACACCA-T-CTCGTTATTTATTCCATTA
gi|1 : TAATTTGTTGTAAAAAAA---TTCA--TCAACTGTATCCA--T-TCCGTACTTTCATG----GA-TGAA-TTAAG---AGCACGATG-TAAGGCACCCTTAT---TAGACAT-C-TAC--C-TGT--AAT--AGCATGAATAGTACCATGCAAC-A-GCACC--ATA-TCTTGTC-A--C-CTA--TGTTCA--GA--------T-GCTCGC-TTTGTATTTC--AGCAAGTGAAA--GT--TTGAA--TTGG-TTTAT---------T-CAGCAGGCAGGCCCC-GTTAGGGAAAT-TTTT--AAGGT-AA-TATA---TAA-CGA--GA---TG-T-GTTG--ATGA-GTTCAGAGAATA-GCCATC-CC-CAACTC-G-G-GC-TTCGG-CCC-CCTCGCGGGTGG-C-ATGCTTTCTCT------------------------TG-AACTAT-TCAACACCATT-CTCGTTA--TA--CCATTA
gi|10 : aacttcttagagataGGAAT-TGTTTTAAG-T-AA-GATAAA-TAA-CTC--GA---TGAT-GTT-GAAT-A-CTTCAGAAAA-A-AC-ATC-CC-CAACTCGG-G-CC-TTTGA-CCC-TC-----GGTAG-TGATGTTTTCTC-------------------------TG-AACTAT-TCAACACCA-T-CAATTTGTTTA-TCCATTAcaacattaagacatata
gi|11 : T-ATATTTC--AGCAAGTTAA-TAGT--T-GAA--T-GG-TTTTT----A----T-CAGCAGG--GG-TCC-GTTTAGGGAAA-TTTT---AAGT-AA-GATAAA-TAA-CGA--AA---TGGT-GTT-GAAT-G-GTTCAGAAAA-A-GC-ATT-CC-CAACTC-GAG-CC-TTC
gi|14 : CTC-G-GGCC-TCCGT-CCC-TT-----GGAGA-GAATGTTTTCTC-------------------------TA-AACTAT-TCAACACCA-T-CTCGTTATTTATGCC
gi|18 : aaGTGG-AGATGCTTTCTA-------------------------TG-AACTAT-ACAACACCA-T-CTTATTATTTATCCCATTA
gi|19 : CC-TC-----GGTGG-CGATGCTTTCTC-------------------------TG-AACTAT-TCAACACCA-T-CTCGTTATTTATaaa
gi|2 : TTTAATTTGT-GTAAAGAAAAATTTCA--TCAACTGTATCCA--T--CCGTACTTTCATG----GGAAGAA-T-AAG---AGCACG-TGATAGAG-ACC--TAT--ATAGACAGGT-TACTAC-TGTTGAATG-AG-ATGAATGGTACCATGCAAC-A-G-ACA--GTA-TTT-GTG-A--A-CTGATTGT-CA--GA-GAAGTAGT-GCTCGCTTT-GTATTTC--AGCAAGTG-AATAG---T-GAA--T-GGTTTTTT----A----T-CAGCAGG--GGCCCCGGTTTAGGGAAA-TTTTTTAA-GT--A-GATATA-TTA-CACGAGA---TGG--GTTGAAAT-A-GTTC--AGAA-A-GC-ATC-CC-CAACTCGG-G-CC-TTCGG-CCC-TT-----CGTGGCCGATGCTTTCTC-------------------------TG-AACTAT-TCAACACCA-TGCTCG-TATTTATTTCGT
gi|20 : -TC-----GGAGA-GAATGTTTTCTC-------------------------TA-AACTAT-TCAACACCA-gattacta
gi|3 : TTTAATTTGT-GTAAAGAAAA-TTTCA--TC-ACTGTATCCA--T-TCCGTACTATCATG----GAATGAA-TTAAG---AGCATC-TG-TAAGG-ACCCTTAT--ATAGACAG-T-TACTAC-TG-TGAAT--AG-ATGAATGGTACCATGCAAC-AGG-ACCCAATATTTT-GTC-AACC-TTGATTGTTCA--GA-G------T-GCTCGC-TT-GTA-TTC--AGCAAGTGAAATAGT--T-GAA--T-GG--TTTT----A----T--AGCA----GGCCCCTTTTAAGGGAATATTTTTTAAGGT-AA-GATATA-TAA-CGA--GA---TGGT-GTTGGAAT-A-GTTCAGAGAA-A-GC-ATC-CCACAACTC-G-G-CC-TTCGGCCCC-CC-----GGTGG-CGATGCTTT-TC-------------------------TGAAACTATGTCAACACCA-T-CTCTTAATTTAGTCCATTA
gi|4 : TTTGATTTGA-GTAAAGACAA-TTTCA--TTAACTG-ATCGAATT-TCCGTATTTT----------ATG-----GAC---AGCTTG-TG-TAAGA-GCCATTTTCCATACACTG-T-TACT----GTTGAATCAAT-ATGAATGATTCCATCCGAC-A-A-ACC--ATA-TCT-ATC-G--C-CTGACTGTTTA--G-----------------------ATTTT--AGCAAGTG-AATAGT--T-GAA--T-GG-TTTCT----ATATGT-CAGCAAG--GGTTCC-GTTAAGGGAAT-TATTATAAGG--AA-CAC-AA-TAA-CTC--GA---TGATCGCT-GAAT-A-GTTC
gi|5 : aattgaattcttctcaggttttgaattcccgattcattgagacgtatcatatttacaatagctaatt-TG-GAAGG-AACTCTTT--ATAGACAG-TATGC-AC-TGTTGAAT--AA-ATGAATGGTGCCATGCAAC-A-G-AAC--CTA-TTT-GTCTA--C-CTGGTTG-TCATCGA-G------T-GCTCGT-TT-GTATTTCATAGCAAGTG-AATAGT--T-GAATTT-GA-TTTTC----A----T--AGCAGC--GGGCTC-GTTAA-GGAAT-TTTTC---AGT-AAGGATAAA-TAA-CTC--GAT--TGAT-GTT-GAAT-A-GTTATGAGAA-A-GC-ATCTCC-CAACTC-G-G-CCTTTCGG-TCCATC-----GGTGG-CGATGCTTTCTCNNNNNNNNNNNNNNNNNNNNNNNNNTG-AACTAT-TCAACACCA-T-CAAGTTATTTA-TCCATT
gi|6 : TTTCATTTGATGTAAAGAAAAGTTCCAGCTCAAC-A-ATCCA--TGTCCCTACTTTCATGTTTCAAATGAAATTGAGCAAGGCACG-TG-TATGG-ACCCTTTT--ATAGACAA----ACTACCTGTTGAAT--AG-AT-AACGGTACCATGCAACCA-CTACC--ATA-TCT-GTC-A--CGCTTACTATTCA--GACG------TTGCTTGCATT-GTATTTC---GCAAGTGAAATAGAAAT-GAA--TCGG-TTTTTTTCTA----TTCAGCAAG--CGTTCCTGTTAAGGAACT-TTTTTTAAAGTCAA-GATAAAATAAACTC--CGCATTGGT-GCTTGAAT-A-GTTCAGAGAA-ACAC-ACC-CC-
gi|7 : TTTCATTTGA-GTAAAGAAAA-TTCCA--TCAAC-A-ATCCA--TGTCCCTACTTTCATG----AAATGAA-TTGAG---AGCACG-TG-TATGG-ACCCTTTT--ATAGACAG-A--ACTAC-TGTTGAAT--AG-ATGAACGGTACCATGCAAC-A-T-ACC--ATA-TCT-GTC-A--C-CTTACTATTCA--GA-G------T-GCTTGCATT-GTATTTC--AGCAAGTG-AATAGT--T-GAA--T-GG-TTTCT----A----T-CAGCAAG--GGTTCC-GTTAAGGGAAT-TTTTTTAA-GT-AA-GATAAA-TAA-CTC--GA---TGGT-GTT-GAAT-A-GTTCAGAGAA-A-AC-ACC-CC-
gi|8 : T-AA-GATAAA-TAA-CTT--GA---TGGT-GTTG--AT-AAGTTCAGAGAA-A-AC-ATC-CC-CA---------CC-TTATG-CCT-TC-----GGTGG-CGATGCTTTCTT-------------------------TG-GACTAT-TCAACGCTA-T-TTCGTTATTTAT
gi|9 : T-AA-GATAAA-TAA-CTT--GA---TGGT-GTTG-AAT-A-GTTCAGAGAA-A-AC-ATC-CC-CA---------CC-TTATG-CCT-TC-----GGTGG-CGATGCTTTCTT-------------------------TG-GACTAT-TCAACGCTA-T-TTCGTTATTTATtaaaaatatatgaatgggatcgggcagtaggcactgcctatttcagcc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAATTTAAACAATATTTTATTCACAAAGAAATATGTGAATGGGATCAGGCAACAGGCATTGCCTATGTTAGT
Unaligned ( gi|13 ): TTTCAACAATATTTTATTAACAAAGAAATATGTGAATAAGATCGGGCAGATGGCATTTCCTTTGTTAGCCC
Unaligned ( gi|15 ): TATTTAAACAATATTTTATTCACAATATGTAATGGGATCGGGGCAGCAGGGCATGCCTATTATTAAGC
Unaligned ( gi|16 ): TTTTAACAATATTTTCAAATAATATGAATGGGGTCGGGTAGCAGGCACAGCCTATTTTAGCCCTCT
Unaligned ( gi|17 ): TTTTTTTATGTACCTTCAAAAGAAAATTGTGAATGGGATCGGGCAGCAGGCATTGCC