lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111111111 2222222222222222222222222222222222222 222222222222222
lowQualScore : 22 222222222 1111 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 1 9999999999999999999999999999 4 1 1 1 999999999999999999 55 1 3333333333 222222 1 22 1111 6666666666666666666666666666666666666 11 1 2 888888 1 2 333333 33333 2 4 44444 2 444444444444444 2 3333333333 1 2
lowQualScore : 00 9 888888888 2222 77 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 0 0 999 9 88 2222222222222222222222222222 6 0 7 3 7 3 777777777777777777 55 5 3333333333 777777 6 6 22 4444 4 6 6 2222222222222222222222222222222222222 11 0 6 555555 7 6 999999 6 1 33333 6 0 6 33333 6 000000000000000 6 3333333333 7 6
lowQualScore : .. . ......... .... .. ............................................................................................................................... . . ... . .. ............................ . . . . . . .................. .. . .......... ...... . . .. .... . . . ..................................... .. . . ...... . . ...... . . ..... . . . ..... . ............... . .......... . .
lowQualScore : 88 1 111111111 1111 44 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 0 888 7 55 0000000000000000000000000000 0 0 3 3 3 3 333333333333333333 00 0 3333333333 000000 0 6 55 3333 0 7 7 0000000000000000000000000000000000000 00 0 7 777777 3 7 000000 0 0 33333 7 0 0 00000 7 000000000000000 7 7777777777 0 7
consensus : CAATAAATGATAATTATGGA--C------GAGCATCTC----AGA-CCCCTG-TGAAAGGTG-C--ACA-A--TATA-G--AT-AAATCGA--TTNG------GGTT---CGAC----TGATA--G-CCATTATT--TA---------CAA-T-CAA-TANAAC-ATTGT---AGGGAGAAGCC-GGTGTC-TGGGAAAGTAGAANANAGAAGCACNTGCAACATCATAAACGGGGGGAACGCGGGAGGAGGGAGGGGACG-GGCAAAGCAC-AAGGTAAAAATCTT-AAGTTAACTTAGATCATAACG-----GGGGGCAATGAGTTTCAGATGG--GGGGGTTGGGGTGTTACAGCGTCG-ACGTCAGGGAT---ATAACAGCGAAACATCGGGGAGG-TTTCA-GT-ANTTCT-TG-CTCTG---AAAGAC---------------AT-------GTG-ATATTGT--TTG-TTTATACAAATATATATAGACTAATATAATTGGCACGCAAAAGTCTATAAA-----TATAGTAGTGGTTAC-AAAACGTGGAAAAGGACAATCGATGAGAAATTTAAAGAATTAACATGTAATGTTAATCCTGAAACCCGGAGATAATTCTAATATGA-TAAAATCAAAATCGTAGGACATTTGTT
Reference ( gi|1 ) : CAATAAATGA-AATTATAGA--T------GAGCATCTC----AGA-CCCCAG-CGAAAGGTG-C--ACA-A--TATA-G--AT-AAATAGA--TTAG------GGTT---TGAC----T--------CC-TT-TT--TA---------C-A-T-CAA-TACCACGATTGT---A---AGAAGCC-GGTGTC-TGGGAAAGTAGAATAAAGAAACATGTGCAA---------------------AGTAGG-GGGGGGGGACGTGGCAAAGCAC-AAGGTAGAAATCTT-AAGTTAACTAAGATCATAACGGGAATGGGGGCAATGAGTTTCAGATGGGAGGGGGTTGGGTTGTTAC-GTGTCAGATGTCAGGGAT---A--ACA-CGAAACAACGGAAAG--TTTCA-GT-ATTTCT-TG-CTCTGTTCAAAGACAAAT---T--TATAGAT-------GTGGATATTGT--TTG-TTTA-ACAAG-----ATAGATTAAT-TAATTGGC--GCAAAAATTTATAAA-----TATAGTAGT-GTTACTAAAACGTGGAAAAGAA-AACAGATGAGAAATTT-AAGAAT---------------ATCCTGAAACCCGGAG-TAATT-TCATAGGATTAAAATCAAATTTGTAGGA-ATTTGTT
gi|2 : CAATAAATAATAATTATGGA--C------GAGCATCTC----AGA-TCCCTG-TGAAAGGTG-CT-ACATA--TACA-T--GT-AAATAAA--TC---------GAT---CGGT----C--------CA-TTATT--TA---------CAA-T-CAA--AC----ATTGTAGGA---AGAAGCT-GGTGTC-TGGGAAAGTAGAAT-AAGAAGCACGTGCAACATCATAAACGGGGGGAACGCGGGAGGAGGGAGGGGACG-GGCAAAGTACAAAGGTA-AAATCTTAAAGTTTAC------------------GGGGGCAATGAGTTTCAGATGG--GGGGGTTGGGGTGTTTC-AGATCGGACTTCAGGGAT---A--ACA-CAAAACAACGGGAGA--CTTCA-CT-ATTTCT-TG-CTCTG----AAGAC---------------AT-------GTGCATATTGT--
gi|6 : ataatatCAATAAATTA-TAATATGGA--C------GAACATCTC----AGG-CCCC-----------------------TATG-------AAATCGA--TTAG------GGTT----GAC----TGATACGGACCATTGTT--TA---------C-AAT-CAAATATAATG-TTGC---AGGGAGAAGCC-GGTGTC-TGACAAAGTAGAATACAG
gi|11 : gaaacacaaaacgaaagctaccgaaacgaaactatataccgaagtaaacagaaacagaacattgtacaaccatactatattgaattataatagCAATAAATGATAATTATTGA--C------AAGCATCTC----AGA-TCCCTG-TGAAAGGTGCC--AC--A--CATA-G--AT-AAATCGA--g
gi|8 : accgaagaaaaaaataaacagacaattgtataaccaaactatCAATAAATGATAATTATTGA--TCATGACAAGCATCTCGATCAGA-ACCCTG-TGAAAGGTA-C---CATA--TATA-G--AT-AAATCGA--TTTG------GGTTGAGTGATACGGT--------CCATTATT--TA---------CAA-T-CAA-
gi|7 : taccgaaaccaaacaaaaatatataccgatgaaaaaataaacagacaattgtataaccaaactatatttaattatatATAAATG----TCCTGGAATC------GAGCATCTC----AAAACTCTAGATGAAAGGTG-CTCATA-ACTTATGTGCTAT-GAATGAA--CTCGAAATGCGGTT---GGAC----TGATAGCGGTC-AT-GTAATA---------C-G-TACAA-TGAAAC-ATTGT---AGAAAGAAGCCTGATGTCGTGGGAAAGTATGAGAAAAAATCAaca
gi|14 : tgaatt-AATGATGGA--C------GAGCATCTC----AGT-CTCCTG-TGTAAATTGCC--AC--A--TAAA-G--ATGAAATCGA--Tccctgcacaatctctatcacacacgacgcgg
gi|5 : aatatcaactTATGGG--C------AAGCATCTC----AGG-ACCCTG-TGGAA--TT-T--TCA-A--CATT-----T-CAATGAAACTCA----------C---TGAC----TGAGA----CA-TT-TT--TAAGCGGTTAGC-A-T-CAA-----AC-ACTGT---T---TGAAAAC-GGTGTC-TGAGAAAACAGAAAACAAAAGCACTTGCAA---------------------
gi|16 : tgtaaaagcgaaatcgaaaccaaatctaactatatgaaatcaaacgaaacggaacgtactgtgtaaccgaactctagttatgatagaatatggtgaGGCAA-GCAC-AAAGTAAAAATCTT-AAGTTAAATTAGATCATAcat
gi|17 : aggAGCAC-AAGGTAAAAATCTG-AAGCTAACTTAGATCATAACG
gi|3 : gggTATTACAGCGTCA--CGTCAGGGAT---ATAACAGCGAAACATCGGAGAGG-TTTCAAGTCAATGCT-TG-CTCTG----AAGA-----------------------------ATATTGT--TTG-TTTATACAAATATATATAGACTAATATAATTGGCACGCAAAAGTCTATAAA-----TATAGTAGTGGTTAC-AAAACGTGGAAAAGGACAATCGATGAGAAATTTAAAGAATTAACATGTAATGTTAATCCTGAAACCCGGAGATAATTCTAATATGA-TAAAATCAAAATTGTAGGACATTTGTT
gi|4 : TTACAGCGTCA--CGTCAGGGAT---ATAACAGCGAAACATCGGAGAGG-TTTCAAGTCAATGCT-TG-CTCTG----AAGA-----------------------------ATATTGT--TTG-TTTATACAAATATATATAGACTAATATAATTGGCACGCAAAAGTCTATAAA-----TATAGTAGTGGTTAC-AAAACGTGGAAAAGGACAATCGATGAGAAATTTAAAGAATTAACATGTAATGTTAATCCTGAAACCCGGAGATAATTCTAATATGA-TAAAATCAAAATTGTAGGACATTTGTT
gi|15 : aACGTCAGGGAT---A--ACA-CGAAACATCGGGAGG--TTTCA-GT-AATTCT-TG-CTCTG---AA-----------------------------TGAATATTGT--TTG-TT
gi|12 : ACGTCAGGGATGAAA--ACA-CGAAACAACGGGGCGGCTTTCA-GT-ATTTCT-TG-CT
gi|10 : ttaaggggtacgagatgatGAAAAG--TTTCA-GC-ATTTCTCTGTCTCTGA-CAAGGACTAATGTATGGTATGGATATGTGGCGTGGATATTGTAAGTGTTTTA-GCAAGAC---ATAGA--GAC-TAAT-----------AGTTTATAAACGTGCTATAGTAGT-tgaagaattatgtatgtac
gi|13 : AGAAATTT-AAGAATTACATGTAATGTA--ATCAGGAAACCCGGAG-ATATT-TACTTGGATTAAAATCAAAATCGTAGGA-ATTTG
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): AAAACGAAATGACATAAAAACGAAACGTAATTTTACGAAACAGAACGAAACAAAGCAAATTTTACAGCAGAACTTTTTAATATTTTAATATGGGCAAGCATCCTCGACTCCTGTGAAATTTTCCACGGACAAACACACTCTCTCAGAC
Alignments
lowQualScore : 1 11111 66666666666666666666 4444444444444444 11111 11111111 1 555555555555555555555 1 1 1 1 33333 22 33 111 2 1 1 111111 8888888888888888888 1 111 1
lowQualScore : 0 1 4 11111 66 9999 1 66 1 11111111111111111111 5 5 5 88 4444444444444444 1 9 99 1 66666 55555555 8 777 0 8 8 1 8 0 0 1 333333333333333333333 2 5 3 3 0 3 0 66 33333 77 2 3 6 55 333 3 3 4 6 1 6 3 3 1 666666 4444444444444444444 7 7 7 6 6 3 6 3 3 999 9 3 3 6 3 111 2 5
lowQualScore : . . . ..... .. .... . .. . .................... . . . .. ................ . . .. . ..... ........ . ... . . . . . . . . ..................... . . . . . . . .. ..... .. . . . .. ... . . . . . . . . . ...... ................... . . . . . . . . . ... . . . . . ... . .
lowQualScore : 1 7 4 11111 11 4444 9 11 4 00000000000000000000 0 0 7 55 7777777777777777 7 8 22 7 77777 66666666 0 888 8 0 0 0 8 2 0 0 222222222222222222222 5 5 3 2 0 2 0 88 33333 55 5 2 5 00 000 5 3 0 7 0 7 3 3 0 000000 7777777777777777777 3 3 3 7 7 3 7 2 2 555 2 2 2 5 0 000 0 0
consensus : CAATAAATGATAATTAT-G-----GA--CGAGCATCTC----AGACCCCTG--TGAAAGGTGC--ACAC----A---------TATAGAT-AAA-TCGAT-TNGGGTT-GACTGATA---G--CCATTATTTA--CAAT-----CA--A-TANAAC-ATTGTAGGAAGAAGCC-GGTGTC-TGGGAAAGTAGAATANAGAAGCA-CGTGCAACATCATAAACGGGGGGAACGCGGNAGGGGGGAGGGGACG-GGCAAAGCACAA-GGTAAAAATCTTAA-GTTAACTTAGATCATAACG-----GGGGGCAATGAGTTTCAGATGGGAGGGGGTTGGGNTGTTACAGCGTCGGACGTCAGGGAT-ATAACA-CGAAACANCGGGGAGG-TTTCA-GT-ANTTCTTGCTCTG---AA-GA-C----------ATGT-G-ATATTGTTTGTTTATACAAATATATATAGACTAATATAATTGGCACGCAAAAGTCTATAAATATAGTAGTGGTTAC-AAAACGTGGAAAAGGACAATCGATGAGAAATTTAAAGAATTAACATGTAATGTTAATCCTGAAACCCGGAGATAATTCTAATANGA-T-AAAATCAAAATTGTAGGACATTTGTT
Reference ( family-97 ) : CAATAAATGATAATTAT-G-----GA--CGAGCATCTC----AGACCCCTG--TGAAAGGTGC--ACA-----A---------TATAGAT-AAA-TCGAT-TNGGGTTCGACTGATA---G--CCATTATTTA--CAAT-----CA--A-TANAAC-ATTGTAGGGAGAAGCC-GGTGTC-TGGGAAAGTAGAANANAGAAGCA-CNTGCAACATCATAAACGGGGGGAACGCGGGAGGAGGGAGGGGACG-GGCAAAGCACAA-GGTAAAAATCTTAA-GTTAACTTAGATCATAACG-----GGGGGCAATGAGTTTCAGATGG--GGGGGTTGGGGTGTTACAGCGTC-GACGTCAGGGAT-ATAACAGCGAAACATCGGGGAGG-TTTCA-GT-ANTTCTTGCTCTG---AAAGA-C----------ATGT-G-ATATTGTTTGTTTATACAAATATATATAGACTAATATAATTGGCACGCAAAAGTCTATAAATATAGTAGTGGTTAC-AAAACGTGGAAAAGGACAATCGATGAGAAATTTAAAGAATTAACATGTAATGTTAATCCTGAAACCCGGAGATAATTCTAATATGA-T-AAAATCAAAATCGTAGGACATTTGTT
gi|1 : CAATAAATGA-AATTAT-A-----GA--TGAGCATCTC----AGACCCCAG--CGAAAGGTGC--ACA-----A---------TATAGAT-AAA-TAGAT-TAGGGTTTGACT----------CC-TT-TTTA--CA-T-----CA--A-TACCACGATTGTA---AGAAGCC-GGTGTC-TGGGAAAGTAGAATAAAGAAACA-TGTGCAA---------------------AGTAGGGGGG-GGGGACGTGGCAAAGCACAA-GGTAGAAATCTTAA-GTTAACTAAGATCATAACGGGAATGGGGGCAATGAGTTTCAGATGGGAGGGGGTTGGGTTGTTAC-GTGTCAGATGTCAGGG---ATAACA-CGAAACAAC-GGAAAG-TTTCA-GT-ATTTCTTGCTCTGTTCAAAGA-CAAATTTATAGATGTGG-ATATTGTTTGTTTA-ACAAG-----ATAGATTAAT-TAATTGG--CGCAAAAATTTATAAATATAGTAGT-GTTACTAAAACGTGGAAAAGAA-AACAGATGAGAAATTT-AAGAAT---------------ATCCTGAAACCCGGAG-TAATT-TCATAGGATT-AAAATCAAATTTGTAGGA-ATTTGTT
gi|11 : CAATAAATGATAATTAT-T-----GA--CAAGCATCTC----AGATCCCTG--TGAAAGGTGC---CAC----A---------CATAGAT-AAA-TCGA
gi|12 : accgaagaaaaaaataaacagacaattgtataaccaaactatACGTCAGGGATGAAAACA-CGAAACAACGGGGCGGCTTTCA-GT-ATTTCTTGCT-TG---AAGAATT----------ATGT-
gi|13 : ttaaggggtacgagatgatAGAAATTTAA-GAATTA-CATGTAATGT-AATCAGGAAACCCGGAGATA--TTTACTTGGA-TTAAAATCAAAATCGTAGGA-ATTTGatgtac
gi|14 : TAATGAT-G-----GA--CGAGCATCTC----AGTCTCCTG--TGTAAATTGC---CAC----A---------TAAAGATGAAA-TCGAT-
gi|15 : aatatcaacACGTCAGGGAT-A--ACA-CGAAACATCGGG-AGG-TTTCA-GT-AATTCTTGCTCTG---AATGA-------------------ATATTGTTTGTT
gi|16 : G-GGCAA-GCACAA-AGTAAAAATCTTAA-GTTAAATTAGATCATA
gi|17 : agAGCACAA-GGTAAAAATCTGAA-GCTAACTTAGATCATAACG-----
gi|2 : gggCAATAAATAATAATTAT-G-----GA--CGAGCATCTC----AGATCCCTG--TGAAAGGTGCT-ACATATACA---------TGTAAAT-AAA-TCGAT-C--GGT----------------CCATTATTTA--CAAT-----CA--A-----AC-ATTGTAGGAAGAAGCT-GGTGTC-TGGGAAAGTAGAATA-AGAAGCA-CGTGCAACATCATAAACGGGGGGAACGCGGGAGGAGGGAGGGGACG-GGCAAAGTACAAAGGTAAAA-TCTTAAAGTTTAC------------------GGGGGCAATGAGTTTCAGATGG--GGGGGTTGGGGTGTTTCAG-ATCGGACTTCAGGG---ATAACA-CAAAACAAC-GGGAGA-CTTCA-CT-ATTTCTTGCTCTG----AAGA-C----------ATGT-GCATATTGT
gi|3 : ataatatTATTACAGCGTC--ACGTCAGGGAT-ATAACAGCGAAACATCGGAGAGG-TTTCAAGTCAATGCTTGCTCTG---AA-GA-------------------ATATTGTTTGTTTATACAAATATATATAGACTAATATAATTGGCACGCAAAAGTCTATAAATATAGTAGTGGTTAC-AAAACGTGGAAAAGGACAATCGATGAGAAATTTAAAGAATTAACATGTAATGTTAATCCTGAAACCCGGAGATAATTCTAATATGA-T-AAAATCAAAATTGTAGGACATTTGTT
gi|4 : TTACAGCGTC--ACGTCAGGGAT-ATAACAGCGAAACATCGGAGAGG-TTTCAAGTCAATGCTTGCTCTG---AA-GA-------------------ATATTGTTTGTTTATACAAATATATATAGACTAATATAATTGGCACGCAAAAGTCTATAAATATAGTAGTGGTTAC-AAAACGTGGAAAAGGACAATCGATGAGAAATTTAAAGAATTAACATGTAATGTTAATCCTGAAACCCGGAGATAATTCTAATATGA-T-AAAATCAAAATTGTAGGACATTTGTT
gi|5 : aATGGTGAT-AT-G-----GG--CAAGCATCTC----AGGACCCTG--TGGAATTTTC--AAC-----A---------TTTCAAT-GAA----AC-TCA---CTGACTGA-----G--ACATT-TTTAAGCGGT-----TAGCA-TCAAAC-ACTGTTTGAAAA---C-GGTGTC-TGAGAAAACAGAAAACAAAAGCA-CTTGCAACAT
gi|6 : tgtaaaagcgaaatcgaaaccaaatctaactatatgaaatcaaacgaaacggaacgtactgtgtaaccgaactctagttatgatagaatCAATAAATTATAAT-AT-G-----GA--CGAACATCTC----AGGCCCCTA--TGAAA-------------------------------------TCGAT-TAGGGTT-GACTGATACGGA--CCATTGTTTA--CAAT-----CA--AATATAAT-GTTGCAGGGAGAAGCC-GGTGTC-TGACAAAGTAGAATACAG
gi|7 : gaaacacaaaacgaaagctaccgaaacgaaactatataccgaagtaaacagaaacagaacattgtacaaccatactatattgaattataatagATAAATG----TCCT-G-----GAATCGAGCATCTC----AAAACTCTAGATGAAAGGTGCTCATA-----ACTTATGTGCTATGAAT-GAACTCGAAATGCGGTTGGACTGATA---G--CGGTCATGTA----ATACGTACA--A-TGAAAC-ATTGTAGAAAGAAGCCTGATGTCGTGGGAAAGTATGAGAAAAAATCACCCTGCAg
gi|8 : tgaattCAATAAATGATAATTATTGATCATGA--CAAGCATCTCGATCAGAACCCTG--TGAAAGGTAC---CAT----A---------TATAGAT-AAA-TCGAT-TTGGGTT-GAGTGATAC--GGTCCATTATTTA--CAAT-----CA--A-caatctctatcacacacgacgcgg
gi|9 : taccgaaaccaaacaaaaatatataccgatgaaaaaataaacagacaattgtataaccaaactatatttaattatatTAAT-AT-G-----GG--CAAGCATCCT----CGACTCCTG--TGAAAaca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GAAAAGTTTCAGCATTTCTCTGTCTCTGACAAGGACTAATGTATGGTATGGATATGTGGCGTGGATATTGTAAGTGTTTTAGCAAGACATAGAGACTAATAGTTTATAAACGTGCTATAGTAGT
Alignments
lowQualScore : 1 11111 44444444444444444444 11 4444444444 11111 11111111 111 777777777777777777777 1 1 1 1 33333 11 22 1 1 1 1 1111 77777777777777777777 1 111 1
lowQualScore : 0 1 4 11111 66 9999 1 66 1 22222222222222222222 5 5 5 44 777 0000000000 1 9 99 1 66666 55555555 8 5 0 8 8 1 8 0 777 333333333333333333333 1 5 3 3 0 3 0 66 33333 88 1 3 6 11 6 1 3 1 9 6 3 3 1 4444 33333333333333333333 7 7 7 6 6 3 6 3 3 999 9 3 3 6 1 111 5
lowQualScore : . . . ..... .. .... . .. . .................... . . . .. ... .......... . . .. . ..... ........ . . . . . . . . ... ..................... . . . . . . . .. ..... .. . . . .. . . . . . . . . . .... .................... . . . . . . . . . ... . . . . . ... .
lowQualScore : 1 7 4 11111 11 4444 9 11 4 88888888888888888888 0 0 7 22 555 2222222222 7 8 22 7 77777 66666666 0 0 8 0 0 0 8 2 555 444444444444444444444 0 5 3 2 0 2 0 88 33333 00 0 2 5 55 7 7 3 0 3 7 3 3 0 2222 22222222222222222222 3 3 3 7 7 3 7 2 2 555 2 2 2 5 0 000 0
consensus : CAATAAATGATAATTAT-G-----GA--CGAGCATCTC----AGACCCCTG--TGAAAGGTGC------CACA----------TATAGAT-AAA-TCGAT-TNGGGTT-G-ACTGATA---G--CCATTATTTA--CAAT-----CA--A-TANAAC-ATTGTAGGAAGAAGCC-GGTGTC-TGGGAAAGTAGAATANAGAAGCAC---GCGCAA----CATCACA-ACG------ACGCGGNAGGGGGGAGGGGACG-GGCAAAGCACAA-GGTAAAAATCTTAA-GTTAACTTAGATCATAACG-----GGGGGCAATGAGTTTCAGATGGGAGGGGGTTGGGNTGTTACAGCGTCGGACGTCAGGGAT-ATAACA-CGAAACANCGGGGAGG-TTTCA-GT-ANTTCTTGCTCTG----AAGA--C----------ATGT-G-ATATTGTTTGTTTATACAAATATATATAGACTAATATAATTGGCACGCAAAAGTCTATAAATATAGTAGTGGTTAC-AAAACGTGGAAAAGGACAATCGATGAGAAATTTAAAGAATTAACATGTAATGTTAATCCTGAAACCCGGAGATAATTCTAATANGA-T-AAAATCAAAATTGTAGGACATTTGTT
Reference ( family-97 ) : CAATAAATGATAATTAT-G-----GA--CGAGCATCTC----AGACCCCTG--TGAAAGGTGC-----ACACA----------TATAGAT-AAA-TCGAT-TNGGGTT-G-ACTGATA---G--CCATTATTTA--CAAT-----CA--A-TANAAC-ATTGTAGGAAGAAGCC-GGTGTC-TGGGAAAGTAGAATANAGAAGCAC---GTGCAA----CATCATAAACGGGGGGAACGCGGNAGGGGGGAGGGGACG-GGCAAAGCACAA-GGTAAAAATCTTAA-GTTAACTTAGATCATAACG-----GGGGGCAATGAGTTTCAGATGGGAGGGGGTTGGGNTGTTACAGCGTCGGACGTCAGGGAT-ATAACA-CGAAACANCGGGGAGG-TTTCA-GT-ANTTCTTGCTCTG----AAGA--C----------ATGT-G-ATATTGTTTGTTTATACAAATATATATAGACTAATATAATTGGCACGCAAAAGTCTATAAATATAGTAGTGGTTAC-AAAACGTGGAAAAGGACAATCGATGAGAAATTTAAAGAATTAACATGTAATGTTAATCCTGAAACCCGGAGATAATTCTAATANGA-T-AAAATCAAAATTGTAGGACATTTGTT
gi|1 : CAATAAATGA-AATTAT-A-----GA--TGAGCATCTC----AGACCCCAG--CGAAAGGTGC-----ACA-A----------TATAGAT-AAA-TAGAT-TAGGGTTTG-ACT----------CC-TT-TTTA--CA-T-----CA--A-TACCACGATTGTA---AGAAGCC-GGTGTC-TGGGAAAGTAGAATAAAGAAACAT---GTGCAA-------------------------AGTAGGGGGG-GGGGACGTGGCAAAGCACAA-GGTAGAAATCTTAA-GTTAACTAAGATCATAACGGGAATGGGGGCAATGAGTTTCAGATGGGAGGGGGTTGGGTTGTTAC-GTGTCAGATGTCAGGG---ATAACA-CGAAACAAC-GGAAAG-TTTCA-GT-ATTTCTTGCTCTGTTCAAAGA--CAAATTTATAGATGTGG-ATATTGTTTGTTTA-ACAAG-----ATAGATTAAT-TAATTGG--CGCAAAAATTTATAAATATAGTAGT-GTTACTAAAACGTGGAAAAGAA-AACAGATGAGAAATTT-AAGAAT---------------ATCCTGAAACCCGGAG-TAATT-TCATAGGATT-AAAATCAAATTTGTAGGA-ATTTGTT
gi|11 : CAATAAATGATAATTAT-T-----GA--CAAGCATCTC----AGATCCCTG--TGAAAGGTGC------CACA----------CATAGAT-AAA-TCGA
gi|12 : accgaagaaaaaaataaacagacaattgtataaccaaactatACGTCAGGGATGAAAACA-CGAAACAACGGGGCGGCTTTCA-GT-ATTTCTTGCT-TG----AAGAATT----------ATGT-
gi|13 : ttaaggggtacgagatgatAGAAATTTAA-GAATTA-CATGTAATGT-AATCAGGAAACCCGGAGATA--TTTACTTGGA-TTAAAATCAAAATCGTAGGA-ATTTGatgtac
gi|14 : TAATGAT-G-----GA--CGAGCATCTC----AGTCTCCTG--TGTAAATTGC------CACA----------TAAAGATGAAA-TCGAT-
gi|15 : aatatcaacACGTCAGGGAT-A--ACA-CGAAACATCGGG-AGG-TTTCA-GT-AATTCTTGCTCTG----A----------------ATG--A-ATATTGTTTGTT
gi|16 : G-GGCAA-GCACAA-AGTAAAAATCTTAA-GTTAAATTAGATCATA
gi|17 : agAGCACAA-GGTAAAAATCTGAA-GCTAACTTAGATCATAACG-----
gi|2 : gggCAATAAATAATAATTAT-G-----GA--CGAGCATCTC----AGATCCCTG--TGAAAGGTGCTACATATACA----------TGTAAAT-AAA-TCGAT-C--GGT-----------------CCATTATTTA--CAAT-----CA--A-----AC-ATTGTAGGAAGAAGCT-GGTGTC-TGGGAAAGTAGAATA-AGAAGCAC---GTGCAA----CATCATAAACGGGGGGAACGCGGGAGGAGGGAGGGGACG-GGCAAAGTACAAAGGTAAAA-TCTTAAAGTTTAC------------------GGGGGCAATGAGTTTCAGATGGG--GGGGTTGGGGTGTTTCAG-ATCGGACTTCAGGGAT-A--ACA-CAAAACAACGGG-AGA-CTTCA-CT-ATTTCTTGCTCTG----AAGA--C----------ATGT-GCATATTGT
gi|3 : ataatatTATTACAGCGTC--ACGTCAGGGAT-ATAACAGCGAAACATCGGAGAGG-TTTCAAGTCAATGCTTGCTCTG----AAGA--------------------ATATTGTTTGTTTATACAAATATATATAGACTAATATAATTGGCACGCAAAAGTCTATAAATATAGTAGTGGTTAC-AAAACGTGGAAAAGGACAATCGATGAGAAATTTAAAGAATTAACATGTAATGTTAATCCTGAAACCCGGAGATAATTCTAATATGA-T-AAAATCAAAATTGTAGGACATTTGTT
gi|4 : TTACAGCGTC--ACGTCAGGGAT-ATAACAGCGAAACATCGGAGAGG-TTTCAAGTCAATGCTTGCTCTG----AAGA--------------------ATATTGTTTGTTTATACAAATATATATAGACTAATATAATTGGCACGCAAAAGTCTATAAATATAGTAGTGGTTAC-AAAACGTGGAAAAGGACAATCGATGAGAAATTTAAAGAATTAACATGTAATGTTAATCCTGAAACCCGGAGATAATTCTAATATGA-T-AAAATCAAAATTGTAGGACATTTGTT
gi|5 : aATGGTGAT-AT-G-----GG--CAAGCATCTC----AGGACCCTG--TGGAATTTTC-----A-ACA----------TTTCAAT-GAA----AC-TC--ACT-G-ACTG--A---G--ACATT-TTTAAGCGGT-----TAGCA-TCAAAC-ACTGTTTGAAAA---C-GGTGTC-TGAGAAAACAGAAAACAAAAGCAC---TTGCAA----CAT
gi|6 : tgtaaaagcgaaatcgaaaccaaatctaactatatgaaatcaaacgaaacggaacgtactgtgtaaccgaactctagttatgatagaatCAATAAATTATAAT-AT-G-----GA--CGAACATCTC----AGGCCCCTA--TGAAA-------------------------------------TCGAT-TAGGGTT-G-ACTGATACGGA--CCATTGTTTA--CAAT-----CA--AATATAAT-GTTGCAGGGAGAAGCC-GGTGTC-TGACAAAGTAGAATACAG
gi|7 : gaaacacaaaacgaaagctaccgaaacgaaactatataccgaagtaaacagaaacagaacattgtacaaccatactatattgaattataatagATAAATG----TCCT-G-----GAATCGAGCATCTC----AAAACTCTAGATGAAAGGTGC-----TCATAACTTATGTGCTATGAAT-GAACTCGAAATGCGGTT-GGACTGATA---G--CGGTCATGTA----ATACGTACA--A-TGAAAC-ATTGTAGAAAGAAGCCTGATGTCGTGGGAAAGTATGAGAAAAAATCACCCTGCACAATCTCTATCACACACG------ACGCGGg
gi|8 : tgaattCAATAAATGATAATTATTGATCATGA--CAAGCATCTCGATCAGAACCCTG--TGAAAGGTAC------CATA----------TATAGAT-AAA-TCGAT-TTGGGTT-G-AGTGATAC--GGTCCATTATTTA--CAAT-----CA--A-
gi|9 : taccgaaaccaaacaaaaatatataccgatgaaaaaataaacagacaattgtataaccaaactatatttaattatatTAAT-AT-G-----GG--CAAGCATCCT----CGACTCCTG--TGAAAaca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GAAAAGTTTCAGCATTTCTCTGTCTCTGACAAGGACTAATGTATGGTATGGATATGTGGCGTGGATATTGTAAGTGTTTTAGCAAGACATAGAGACTAATAGTTTATAAACGTGCTATAGTAGT
Alignments
lowQualScore : 1 11111 22222222222222222222 11 4444444444 11111 11111111 111 8888888888888888888888 1 1 1 1 33333 11 22 1 1 1 1 1111 77777777777777777777 1 111 1
lowQualScore : 0 1 4 11111 66 9999 1 66 44 0 8 1 55555555555555555555 5 5 5 44 777 0000000000 1 9 99 1 66666 55555555 8 5 0 8 8 1 8 0 777 2 2222222222222222222222 1 5 3 3 0 3 0 66 33333 88 1 3 6 11 6 1 3 1 9 6 3 3 1 4444 33333333333333333333 7 7 7 6 6 3 6 3 3 999 9 3 3 6 1 111 5
lowQualScore : . . . ..... .. .... . .. .. . . . .................... . . . .. ... .......... . . .. . ..... ........ . . . . . . . . ... . ...................... . . . . . . . .. ..... .. . . . .. . . . . . . . . . .... .................... . . . . . . . . . ... . . . . . ... .
lowQualScore : 1 7 4 11111 11 4444 9 11 00 1 9 9 55555555555555555555 0 0 7 22 555 2222222222 7 8 22 7 77777 66666666 0 0 8 0 0 0 8 2 555 0 4444444444444444444444 0 5 3 2 0 2 0 88 33333 00 0 2 5 55 7 7 3 0 3 7 3 3 0 2222 22222222222222222222 3 3 3 7 7 3 7 2 2 555 2 2 2 5 0 000 0
consensus : CAATAAATGATAATTAT-G-----GA--CGAGCATCTC----AGACCCCTG--TGAAAGGTGC-CACA----------TATA------GAT-AAA-TCGAT-TNGGGTT-G-ACTGATA---G--CCATTATTTA--CAAT-----CA--A-TANAAC-ATTGTAGGAAGAAGCC-GGTGTC-TGGGAAAGTAGAATANAGAAGCAC---GCGCAA----CATCACA-A-CG------ACGCGGNAGGGGGGAGGGGACG-GGCAAAGCACAA-GGTAAAAATCTTAA-GTTAACTTAGATCATAACG-----GGGGGCAATGAGTTTCAGATGGGAGGGGGTTGGGNTGTTACAGCGTCGGACGTCAGGGAT-ATAACA-CGAAACANCGGGGAGG-TTTCA-GT-ANTTCTTGCTCTG----AAGA--C----------ATGT-G-ATATTGTTTGTTTATACAAATATATATAGACTAATATAATTGGCACGCAAAAGTCTATAAATATAGTAGTGGTTAC-AAAACGTGGAAAAGGACAATCGATGAGAAATTTAAAGAATTAACATGTAATGTTAATCCTGAAACCCGGAGATAATTCTAATANGA-T-AAAATCAAAATTGTAGGACATTTGTT
Reference ( family-97 ) : CAATAAATGATAATTAT-G-----GA--CGAGCATCTC----AGACCCCTG--TGAAAGGTGC-CACA----------TATA------GAT-AAA-TCGAT-TNGGGTT-G-ACTGATA---G--CCATTATTTA--CAAT-----CA--A-TANAAC-ATTGTAGGAAGAAGCC-GGTGTC-TGGGAAAGTAGAATANAGAAGCAC---GCGCAA----CATCACA-A-CG------ACGCGGNAGGGGGGAGGGGACG-GGCAAAGCACAA-GGTAAAAATCTTAA-GTTAACTTAGATCATAACG-----GGGGGCAATGAGTTTCAGATGGGAGGGGGTTGGGNTGTTACAGCGTCGGACGTCAGGGAT-ATAACA-CGAAACANCGGGGAGG-TTTCA-GT-ANTTCTTGCTCTG----AAGA--C----------ATGT-G-ATATTGTTTGTTTATACAAATATATATAGACTAATATAATTGGCACGCAAAAGTCTATAAATATAGTAGTGGTTAC-AAAACGTGGAAAAGGACAATCGATGAGAAATTTAAAGAATTAACATGTAATGTTAATCCTGAAACCCGGAGATAATTCTAATANGA-T-AAAATCAAAATTGTAGGACATTTGTT
gi|1 : CAATAAATGA-AATTAT-A-----GA--TGAGCATCTC----AGACCCCAG--CGAAAGGTGCACA-A----------TATA------GAT-AAA-TAGAT-TAGGGTTTG-ACT----------CC-TT-TTTA--CA-T-----CA--A-TACCACGATTGTA---AGAAGCC-GGTGTC-TGGGAAAGTAGAATAAAGAAACAT---GTGCAA--------------------------AGTAGGGGGG-GGGGACGTGGCAAAGCACAA-GGTAGAAATCTTAA-GTTAACTAAGATCATAACGGGAATGGGGGCAATGAGTTTCAGATGGGAGGGGGTTGGGTTGTTAC-GTGTCAGATGTCAGGG---ATAACA-CGAAACAAC-GGAAAG-TTTCA-GT-ATTTCTTGCTCTGTTCAAAGA--CAAATTTATAGATGTGG-ATATTGTTTGTTTA-ACAAG-----ATAGATTAAT-TAATTGG--CGCAAAAATTTATAAATATAGTAGT-GTTACTAAAACGTGGAAAAGAA-AACAGATGAGAAATTT-AAGAAT---------------ATCCTGAAACCCGGAG-TAATT-TCATAGGATT-AAAATCAAATTTGTAGGA-ATTTGTT
gi|11 : CAATAAATGATAATTAT-T-----GA--CAAGCATCTC----AGATCCCTG--TGAAAGGTGC-CACA----------CATA------GAT-AAA-TCGA
gi|12 : accgaagaaaaaaataaacagacaattgtataaccaaactatACGTCAGGGATGAAAACA-CGAAACAACGGGGCGGCTTTCA-GT-ATTTCTTGCT-TG----AAGAATT----------ATGT-
gi|13 : ttaaggggtacgagatgatAGAAATTTAA-GAATTA-CATGTAATGT-AATCAGGAAACCCGGAGATA--TTTACTTGGA-TTAAAATCAAAATCGTAGGA-ATTTGatgtac
gi|14 : TAATGAT-G-----GA--CGAGCATCTC----AGTCTCCTG--TGTAAATTGC-CACA----------TAAA------GATGAAA-TCGAT-
gi|15 : aatatcaacACGTCAGGGAT-A--ACA-CGAAACATCGGG-AGG-TTTCA-GT-AATTCTTGCTCTG----A----------------ATG--A-ATATTGTTTGTT
gi|16 : G-GGCAA-GCACAA-AGTAAAAATCTTAA-GTTAAATTAGATCATA
gi|17 : agAGCACAA-GGTAAAAATCTGAA-GCTAACTTAGATCATAACG-----
gi|2 : gggCAATAAATAATAATTAT-G-----GA--CGAGCATCTC----AGATCCCTG--TGAAAGGTGC-TACA----------TATACATGTAAAT-AAA-TCGAT-C--GGT-----------------CCATTATTTA--CAAT-----CA--A-----AC-ATTGTAGGAAGAAGCT-GGTGTC-TGGGAAAGTAGAATA-AGAAGCAC---GTGCAA----CATCATA-AACGGGGGGAACGCGGGAGGAGGGAGGGGACG-GGCAAAGTACAAAGGTAAAA-TCTTAAAGTTTAC------------------GGGGGCAATGAGTTTCAGATGGG--GGGGTTGGGGTGTTTCAG-ATCGGACTTCAGGGAT-A--ACA-CAAAACAACGGG-AGA-CTTCA-CT-ATTTCTTGCTCTG----AAGA--C----------ATGT-GCATATTGT
gi|3 : ataatatTATTACAGCGTC--ACGTCAGGGAT-ATAACAGCGAAACATCGGAGAGG-TTTCAAGTCAATGCTTGCTCTG----AAGA--------------------ATATTGTTTGTTTATACAAATATATATAGACTAATATAATTGGCACGCAAAAGTCTATAAATATAGTAGTGGTTAC-AAAACGTGGAAAAGGACAATCGATGAGAAATTTAAAGAATTAACATGTAATGTTAATCCTGAAACCCGGAGATAATTCTAATATGA-T-AAAATCAAAATTGTAGGACATTTGTT
gi|4 : TTACAGCGTC--ACGTCAGGGAT-ATAACAGCGAAACATCGGAGAGG-TTTCAAGTCAATGCTTGCTCTG----AAGA--------------------ATATTGTTTGTTTATACAAATATATATAGACTAATATAATTGGCACGCAAAAGTCTATAAATATAGTAGTGGTTAC-AAAACGTGGAAAAGGACAATCGATGAGAAATTTAAAGAATTAACATGTAATGTTAATCCTGAAACCCGGAGATAATTCTAATATGA-T-AAAATCAAAATTGTAGGACATTTGTT
gi|5 : aATGGTGAT-AT-G-----GG--CAAGCATCTC----AGGACCCTG--TGGAATTTTC-AACA----------TTTC------AAT-GAA----AC-TC--ACT-G-ACTG--A---G--ACATT-TTTAAGCGGT-----TAGCA-TCAAAC-ACTGTTTGAAAA---C-GGTGTC-TGAGAAAACAGAAAACAAAAGCAC---TTGCAA----CAT
gi|6 : tgtaaaagcgaaatcgaaaccaaatctaactatatgaaatcaaacgaaacggaacgtactgtgtaaccgaactctagttatgatagaatCAATAAATTATAAT-AT-G-----GA--CGAACATCTC----AGGCCCCTA--TGAAA--------------------------------------TCGAT-TAGGGTT-G-ACTGATACGGA--CCATTGTTTA--CAAT-----CA--AATATAAT-GTTGCAGGGAGAAGCC-GGTGTC-TGACAAAGTAGAATACAG
gi|7 : gaaacacaaaacgaaagctaccgaaacgaaactatataccgaagtaaacagaaacagaacattgtacaaccatactatattgaattataatagATAAATG----TCCT-G-----GAATCGAGCATCTC----AAAACTCTAGATGAAAGGTGCTCATAACTTATGTGCTATG------AAT-GAACTCGAAATGCGGTT-GGACTGATA---G--CGGTCATGTA----ATACGTACA--A-TGAAAC-ATTGTAGAAAGAAGCCTGATGTCGTGGGAAAGTATGAGAAAAAATCACCCTGCACAATCTCTATCACACA-CG------ACGCGGg
gi|8 : tgaattCAATAAATGATAATTATTGATCATGA--CAAGCATCTCGATCAGAACCCTG--TGAAAGGTAC-CATA----------TATA------GAT-AAA-TCGAT-TTGGGTT-G-AGTGATAC--GGTCCATTATTTA--CAAT-----CA--A-
gi|9 : taccgaaaccaaacaaaaatatataccgatgaaaaaataaacagacaattgtataaccaaactatatttaattatatTAAT-AT-G-----GG--CAAGCATCCT----CGACTCCTG--TGAAATTTTC-CACaca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GAAAAGTTTCAGCATTTCTCTGTCTCTGACAAGGACTAATGTATGGTATGGATATGTGGCGTGGATATTGTAAGTGTTTTAGCAAGACATAGAGACTAATAGTTTATAAACGTGCTATAGTAGT
Alignments
lowQualScore : 1 11111 22222222222222222222 11 4444444444 11111 11111111 111 8888888888888888888888 1 1 1 1 33333 11 22 1 1 1 1 1111 77777777777777777777 1 111 1
lowQualScore : 0 1 4 11111 66 9999 1 66 44 0 8 1 55555555555555555555 5 5 5 44 777 0000000000 1 9 99 1 66666 55555555 8 5 0 8 8 1 8 0 777 2 2222222222222222222222 1 5 3 3 0 3 0 66 33333 88 1 3 6 11 6 1 3 1 9 6 3 3 1 4444 33333333333333333333 7 7 7 6 6 3 6 3 3 999 9 3 3 6 1 111 5
lowQualScore : . . . ..... .. .... . .. .. . . . .................... . . . .. ... .......... . . .. . ..... ........ . . . . . . . . ... . ...................... . . . . . . . .. ..... .. . . . .. . . . . . . . . . .... .................... . . . . . . . . . ... . . . . . ... .
lowQualScore : 1 7 4 11111 11 4444 9 11 00 1 9 9 55555555555555555555 0 0 7 22 555 2222222222 7 8 22 7 77777 66666666 0 0 8 0 0 0 8 2 555 0 4444444444444444444444 0 5 3 2 0 2 0 88 33333 00 0 2 5 55 7 7 3 0 3 7 3 3 0 2222 22222222222222222222 3 3 3 7 7 3 7 2 2 555 2 2 2 5 0 000 0
consensus : CAATAAATGATAATTAT-G-----GA--CGAGCATCTC----AGACCCCTG--TGAAAGGTGC-CACA----------TATA------GAT-AAA-TCGAT-TNGGGTT-G-ACTGATA---G--CCATTATTTA--CAAT-----CA--A-TANAAC-ATTGTAGGAAGAAGCC-GGTGTC-TGGGAAAGTAGAATANAGAAGCAC---GCGCAA----CATCACA-A-CG------ACGCGGNAGGGGGGAGGGGACG-GGCAAAGCACAA-GGTAAAAATCTTAA-GTTAACTTAGATCATAACG-----GGGGGCAATGAGTTTCAGATGGGAGGGGGTTGGGNTGTTACAGCGTCGGACGTCAGGGAT-ATAACA-CGAAACANCGGGGAGG-TTTCA-GT-ANTTCTTGCTCTG----AAGA--C----------ATGT-G-ATATTGTTTGTTTATACAAATATATATAGACTAATATAATTGGCACGCAAAAGTCTATAAATATAGTAGTGGTTAC-AAAACGTGGAAAAGGACAATCGATGAGAAATTTAAAGAATTAACATGTAATGTTAATCCTGAAACCCGGAGATAATTCTAATANGA-T-AAAATCAAAATTGTAGGACATTTGTT
Reference ( family-97 ) : CAATAAATGATAATTAT-G-----GA--CGAGCATCTC----AGACCCCTG--TGAAAGGTGC-CACA----------TATA------GAT-AAA-TCGAT-TNGGGTT-G-ACTGATA---G--CCATTATTTA--CAAT-----CA--A-TANAAC-ATTGTAGGAAGAAGCC-GGTGTC-TGGGAAAGTAGAATANAGAAGCAC---GCGCAA----CATCACA-A-CG------ACGCGGNAGGGGGGAGGGGACG-GGCAAAGCACAA-GGTAAAAATCTTAA-GTTAACTTAGATCATAACG-----GGGGGCAATGAGTTTCAGATGGGAGGGGGTTGGGNTGTTACAGCGTCGGACGTCAGGGAT-ATAACA-CGAAACANCGGGGAGG-TTTCA-GT-ANTTCTTGCTCTG----AAGA--C----------ATGT-G-ATATTGTTTGTTTATACAAATATATATAGACTAATATAATTGGCACGCAAAAGTCTATAAATATAGTAGTGGTTAC-AAAACGTGGAAAAGGACAATCGATGAGAAATTTAAAGAATTAACATGTAATGTTAATCCTGAAACCCGGAGATAATTCTAATANGA-T-AAAATCAAAATTGTAGGACATTTGTT
gi|1 : CAATAAATGA-AATTAT-A-----GA--TGAGCATCTC----AGACCCCAG--CGAAAGGTGCACA-A----------TATA------GAT-AAA-TAGAT-TAGGGTTTG-ACT----------CC-TT-TTTA--CA-T-----CA--A-TACCACGATTGTA---AGAAGCC-GGTGTC-TGGGAAAGTAGAATAAAGAAACAT---GTGCAA--------------------------AGTAGGGGGG-GGGGACGTGGCAAAGCACAA-GGTAGAAATCTTAA-GTTAACTAAGATCATAACGGGAATGGGGGCAATGAGTTTCAGATGGGAGGGGGTTGGGTTGTTAC-GTGTCAGATGTCAGGG---ATAACA-CGAAACAAC-GGAAAG-TTTCA-GT-ATTTCTTGCTCTGTTCAAAGA--CAAATTTATAGATGTGG-ATATTGTTTGTTTA-ACAAG-----ATAGATTAAT-TAATTGG--CGCAAAAATTTATAAATATAGTAGT-GTTACTAAAACGTGGAAAAGAA-AACAGATGAGAAATTT-AAGAAT---------------ATCCTGAAACCCGGAG-TAATT-TCATAGGATT-AAAATCAAATTTGTAGGA-ATTTGTT
gi|11 : CAATAAATGATAATTAT-T-----GA--CAAGCATCTC----AGATCCCTG--TGAAAGGTGC-CACA----------CATA------GAT-AAA-TCGA
gi|12 : accgaagaaaaaaataaacagacaattgtataaccaaactatACGTCAGGGATGAAAACA-CGAAACAACGGGGCGGCTTTCA-GT-ATTTCTTGCT-TG----AAGAATT----------ATGT-
gi|13 : ttaaggggtacgagatgatAGAAATTTAA-GAATTA-CATGTAATGT-AATCAGGAAACCCGGAGATA--TTTACTTGGA-TTAAAATCAAAATCGTAGGA-ATTTGatgtac
gi|14 : TAATGAT-G-----GA--CGAGCATCTC----AGTCTCCTG--TGTAAATTGC-CACA----------TAAA------GATGAAA-TCGAT-
gi|15 : aatatcaacACGTCAGGGAT-A--ACA-CGAAACATCGGG-AGG-TTTCA-GT-AATTCTTGCTCTG----A----------------ATG--A-ATATTGTTTGTT
gi|16 : G-GGCAA-GCACAA-AGTAAAAATCTTAA-GTTAAATTAGATCATA
gi|17 : agAGCACAA-GGTAAAAATCTGAA-GCTAACTTAGATCATAACG-----
gi|2 : gggCAATAAATAATAATTAT-G-----GA--CGAGCATCTC----AGATCCCTG--TGAAAGGTGC-TACA----------TATACATGTAAAT-AAA-TCGAT-C--GGT-----------------CCATTATTTA--CAAT-----CA--A-----AC-ATTGTAGGAAGAAGCT-GGTGTC-TGGGAAAGTAGAATA-AGAAGCAC---GTGCAA----CATCATA-AACGGGGGGAACGCGGGAGGAGGGAGGGGACG-GGCAAAGTACAAAGGTAAAA-TCTTAAAGTTTAC------------------GGGGGCAATGAGTTTCAGATGGG--GGGGTTGGGGTGTTTCAG-ATCGGACTTCAGGGAT-A--ACA-CAAAACAACGGG-AGA-CTTCA-CT-ATTTCTTGCTCTG----AAGA--C----------ATGT-GCATATTGT
gi|3 : ataatatTATTACAGCGTC--ACGTCAGGGAT-ATAACAGCGAAACATCGGAGAGG-TTTCAAGTCAATGCTTGCTCTG----AAGA--------------------ATATTGTTTGTTTATACAAATATATATAGACTAATATAATTGGCACGCAAAAGTCTATAAATATAGTAGTGGTTAC-AAAACGTGGAAAAGGACAATCGATGAGAAATTTAAAGAATTAACATGTAATGTTAATCCTGAAACCCGGAGATAATTCTAATATGA-T-AAAATCAAAATTGTAGGACATTTGTT
gi|4 : TTACAGCGTC--ACGTCAGGGAT-ATAACAGCGAAACATCGGAGAGG-TTTCAAGTCAATGCTTGCTCTG----AAGA--------------------ATATTGTTTGTTTATACAAATATATATAGACTAATATAATTGGCACGCAAAAGTCTATAAATATAGTAGTGGTTAC-AAAACGTGGAAAAGGACAATCGATGAGAAATTTAAAGAATTAACATGTAATGTTAATCCTGAAACCCGGAGATAATTCTAATATGA-T-AAAATCAAAATTGTAGGACATTTGTT
gi|5 : aATGGTGAT-AT-G-----GG--CAAGCATCTC----AGGACCCTG--TGGAATTTTC-AACA----------TTTC------AAT-GAA----AC-TC--ACT-G-ACTG--A---G--ACATT-TTTAAGCGGT-----TAGCA-TCAAAC-ACTGTTTGAAAA---C-GGTGTC-TGAGAAAACAGAAAACAAAAGCAC---TTGCAA----CAT
gi|6 : tgtaaaagcgaaatcgaaaccaaatctaactatatgaaatcaaacgaaacggaacgtactgtgtaaccgaactctagttatgatagaatCAATAAATTATAAT-AT-G-----GA--CGAACATCTC----AGGCCCCTA--TGAAA--------------------------------------TCGAT-TAGGGTT-G-ACTGATACGGA--CCATTGTTTA--CAAT-----CA--AATATAAT-GTTGCAGGGAGAAGCC-GGTGTC-TGACAAAGTAGAATACAG
gi|7 : gaaacacaaaacgaaagctaccgaaacgaaactatataccgaagtaaacagaaacagaacattgtacaaccatactatattgaattataatagATAAATG----TCCT-G-----GAATCGAGCATCTC----AAAACTCTAGATGAAAGGTGCTCATAACTTATGTGCTATG------AAT-GAACTCGAAATGCGGTT-GGACTGATA---G--CGGTCATGTA----ATACGTACA--A-TGAAAC-ATTGTAGAAAGAAGCCTGATGTCGTGGGAAAGTATGAGAAAAAATCACCCTGCACAATCTCTATCACACA-CG------ACGCGGg
gi|8 : tgaattCAATAAATGATAATTATTGATCATGA--CAAGCATCTCGATCAGAACCCTG--TGAAAGGTAC-CATA----------TATA------GAT-AAA-TCGAT-TTGGGTT-G-AGTGATAC--GGTCCATTATTTA--CAAT-----CA--A-
gi|9 : taccgaaaccaaacaaaaatatataccgatgaaaaaataaacagacaattgtataaccaaactatatttaattatatTAAT-AT-G-----GG--CAAGCATCCT----CGACTCCTG--TGAAATTTTC-CACaca
blockSeqs : T T ATCAT AT GATC T GA GG T C ACTTATGTGCTATG G C A AG GG GATACGGA A A AG A ACGTA GCATCAA . G T G T C CCT T CATCATAAACGGGGGGA G A . A A A A TT . . G A C GG G A G A G C A C T . CATGTGC T T A C G . C A A TAA T A A T G TT C
blockSeqs : G . . . . C . AT . C TATACATGTA . . . GC G GATACGGT A G . G . AATATA . T . . A C . T TCTCTATCACACACG . A . A . TT . A C . . T G T G . A C A . ATGA T T A C G . C A A TAA T A A C T T C
blockSeqs : T . . . . T . GG . C CATA . . . TG G GATAG A A . A . ATGAA . G . . T A . C . . . . . A . . . T . A G . . . T . . A . TA . A . C T T .
blockSeqs : C . . . . A . TT . C TAAA . . . C G GAG G A . A . A . G . . G . . . . T . . . . A . .
blockSeqs : T . . . . C . GG . T TTTC . . . . . . A . . A . . . . T . . . . A .
blockSeqs : . . . . . A . GG . T TATA . . .
blockSeqs : . . . . . A . TT . C . . .
blockSeqs : . . . . . C . . . .
blockSeqCons : G** GATAG***** ATA***** **** G*******************
originalCons : CAATAAATGATAATTAT-G-----GA--CGAGCATCTC----AGACCCCTG--TGAAAGGTGC-CACA----------TATA------GAT-AAA-TCGAT-TNGGGTT-G-ACTGATA---G--CCATTATTTA--CAAT-----CA--A-TANAAC-ATTGTAGGAAGAAGCC-GGTGTC-TGGGAAAGTAGAATANAGAAGCAC---GCGCAA----CATCACA-A-CG------ACGCGGNAGGGGGGAGGGGACG-GGCAAAGCACAA-GGTAAAAATCTTAA-GTTAACTTAGATCATAACG-----GGGGGCAATGAGTTTCAGATGGGAGGGGGTTGGGNTGTTACAGCGTCGGACGTCAGGGAT-ATAACA-CGAAACANCGGGGAGG-TTTCA-GT-ANTTCTTGCTCTG----AAGA--C----------ATGT-G-ATATTGTTTGTTTATACAAATATATATAGACTAATATAATTGGCACGCAAAAGTCTATAAATATAGTAGTGGTTAC-AAAACGTGGAAAAGGACAATCGATGAGAAATTTAAAGAATTAACATGTAATGTTAATCCTGAAACCCGGAGATAATTCTAATANGA-T-AAAATCAAAATTGTAGGACATTTGTT
finalCons : CAATAAATGATAATTAT-G-----GA--CGAGCATCTC----AGACCCCTG--TGAAAGGTGC-CACA----------TATA------GAT-AAA-TCGAT-TNGGGTTG--ACTGATAG-----CCATTATTTA--CAAT-----CAATA-----AC-ATTGTAGGAAGAAGCC-GGTGTC-TGGGAAAGTAGAATANAGAAGCAC---GCGCAA----CATCACA-A-CG------ACGCGGNAGGGGGGAGGGGACG-GGCAAAGCACAA-GGTAAAAATCTTAA-GTTAACTTAGATCATAACG-----GGGGGCAATGAGTTTCAGATGGGAGGGGGTTGGGNTGTTACAGCGTCGGACGTCAGGGAT-ATAACA-CGAAACANCGGGGAGG-TTTCA-GT-ANTTCTTGCTCTG----AAGAG-------------------ATATTGTTTGTTTATACAAATATATATAGACTAATATAATTGGCACGCAAAAGTCTATAAATATAGTAGTGGTTAC-AAAACGTGGAAAAGGACAATCGATGAGAAATTTAAAGAATTAACATGTAATGTTAATCCTGAAACCCGGAGATAATTCTAATANGA-T-AAAATCAAAATTGTAGGACATTTGTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GAAAAGTTTCAGCATTTCTCTGTCTCTGACAAGGACTAATGTATGGTATGGATATGTGGCGTGGATATTGTAAGTGTTTTAGCAAGACATAGAGACTAATAGTTTATAAACGTGCTATAGTAGT
Alignments
lowQualScore : 1 11111 22222222222222222222 11 44444444444444 111111 444444444444 111 8888888888888888888888 1 1 1 1 33333 11 22 111 1 1 1 1111 66666666666666666 1 111 1
lowQualScore : 0 1 4 11111 66 9999 1 66 44 0 8 1 55555555555555555555 5 5 5 44 777 66666666666666 555555 99 1 555555555555 8 5 0 8 8 1 8 0 777 2 2222222222222222222222 1 5 3 3 0 3 0 66 33333 88 1 3 6 11 333 3 3 1 6 1 6 3 3 1 4444 00000000000000000 7 7 7 6 6 3 6 3 3 999 9 3 3 6 1 111 5
lowQualScore : . . . ..... .. .... . .. .. . . . .................... . . . .. ... .............. ...... .. . ............ . . . . . . . . ... . ...................... . . . . . . . .. ..... .. . . . .. ... . . . . . . . . . .... ................. . . . . . . . . . ... . . . . . ... .
lowQualScore : 1 7 4 11111 11 4444 9 11 00 1 9 9 55555555555555555555 0 0 7 22 555 00000000000000 000000 22 7 000000000000 0 0 8 0 0 0 8 2 555 0 4444444444444444444444 0 5 3 2 0 2 0 88 33333 00 0 2 5 55 000 5 3 0 7 0 7 3 3 0 2222 33333333333333333 3 3 3 7 7 3 7 2 2 555 2 2 2 5 0 000 0
consensus : CAATAAATGATAATTAT-G-----GA--CGAGCATCTC----AGACCCCTG--TGAAAGGTGC-CACA----------TATA------GAT-AAA-TCGAT-TNGGGTT-G-ACTGATA---G--C---CAT----TATTTA--CAATCA--A---T--A--AC-ATTGTAGGAAGAAGCC-GGTGTC-TGGGAAAGTAGAATANAGAAGCAC---GCGCAA----CATCACA-A-CG------ACGCGGNAGGGGGGAGGGGACG-GGCAAAGCACAA-GGTAAAAATCTTAA-GTTAACTTAGATCATAACG-----GGGGGCAATGAGTTTCAGATGGGAGGGGGTTGGGNTGTTACAGCGTCGGACGTCAGGGAT-ATAACA-CGAAACANCGGGGAGG-TTTCA-GT-ANTTCTTGCTCTG----AAGA----------------AATATTGTTTGTTTATACAAATATATATAGACTAATATAATTGGCACGCAAAAGTCTATAAATATAGTAGTGGTTAC-AAAACGTGGAAAAGGACAATCGATGAGAAATTTAAAGAATTAACATGTAATGTTAATCCTGAAACCCGGAGATAATTCTAATANGA-T-AAAATCAAAATTGTAGGACATTTGTT
Reference ( family-97 ) : CAATAAATGATAATTAT-G-----GA--CGAGCATCTC----AGACCCCTG--TGAAAGGTGC-CACA----------TATA------GAT-AAA-TCGAT-TNGGGTT-G-ACTGATA---G--C---CAT----TATTTA--CAATCA--A---T--A--AC-ATTGTAGGAAGAAGCC-GGTGTC-TGGGAAAGTAGAATANAGAAGCAC---GCGCAA----CATCACA-A-CG------ACGCGGNAGGGGGGAGGGGACG-GGCAAAGCACAA-GGTAAAAATCTTAA-GTTAACTTAGATCATAACG-----GGGGGCAATGAGTTTCAGATGGGAGGGGGTTGGGNTGTTACAGCGTCGGACGTCAGGGAT-ATAACA-CGAAACANCGGGGAGG-TTTCA-GT-ANTTCTTGCTCTG----AAGA----------------GATATTGTTTGTTTATACAAATATATATAGACTAATATAATTGGCACGCAAAAGTCTATAAATATAGTAGTGGTTAC-AAAACGTGGAAAAGGACAATCGATGAGAAATTTAAAGAATTAACATGTAATGTTAATCCTGAAACCCGGAGATAATTCTAATANGA-T-AAAATCAAAATTGTAGGACATTTGTT
gi|1 : CAATAAATGA-AATTAT-A-----GA--TGAGCATCTC----AGACCCCAG--CGAAAGGTGCACA-A----------TATA------GAT-AAA-TAGAT-TAGGGTTTG-ACT----------C---C-T----T-TTTA--CA-TCA--A---T--ACCACGATTGTA---AGAAGCC-GGTGTC-TGGGAAAGTAGAATAAAGAAACAT---GTGCAA--------------------------AGTAGGGGGG-GGGGACGTGGCAAAGCACAA-GGTAGAAATCTTAA-GTTAACTAAGATCATAACGGGAATGGGGGCAATGAGTTTCAGATGGGAGGGGGTTGGGTTGTTAC-GTGTCAGATGTCAGGG---ATAACA-CGAAACAAC-GGAAAG-TTTCA-GT-ATTTCTTGCTCTGTTCAAAGACAAATTTATAGATGTGGATATTGTTTGTTTA-ACAAG-----ATAGATTAAT-TAATTGG--CGCAAAAATTTATAAATATAGTAGT-GTTACTAAAACGTGGAAAAGAA-AACAGATGAGAAATTT-AAGAAT---------------ATCCTGAAACCCGGAG-TAATT-TCATAGGATT-AAAATCAAATTTGTAGGA-ATTTGTT
gi|11 : CAATAAATGATAATTAT-T-----GA--CAAGCATCTC----AGATCCCTG--TGAAAGGTGC-CACA----------CATA------GAT-AAA-TCGA
gi|12 : accgaagaaaaaaataaacagacaattgtataaccaaactatACGTCAGGGATGAAAACA-CGAAACAACGGGGCGGCTTTCA-GT-ATTTCTTGCT-TG----AAGA----------------ATTA-TGTATGT
gi|13 : ttaaggggtacgagatgatAGAAATTTAA-GAATTA-CATGTAATGT-AATCAGGAAACCCGGAGATA--TTTACTTGGA-TTAAAATCAAAATCGTAGGA-ATTTGac
gi|14 : TAATGAT-G-----GA--CGAGCATCTC----AGTCTCCTG--TGTAAATTGC-CACA----------TAAA------GATGAAA-TCGAT-
gi|15 : aatatcaacACGTCAGGGAT-A--ACA-CGAAACATCGGG-AGG-TTTCA-GT-AATTCTTGCTCTG----AATG----------------AATATTGTTTGTT
gi|16 : G-GGCAA-GCACAA-AGTAAAAATCTTAA-GTTAAATTAGATCATA
gi|17 : agAGCACAA-GGTAAAAATCTGAA-GCTAACTTAGATCATAACG-----
gi|2 : gggCAATAAATAATAATTAT-G-----GA--CGAGCATCTC----AGATCCCTG--TGAAAGGTGC-TACA----------TATACATGTAAAT-AAA-TCGAT-C--GGT-----------------C---CAT----TATTTA--CAATCA--A---------AC-ATTGTAGGAAGAAGCT-GGTGTC-TGGGAAAGTAGAATA-AGAAGCAC---GTGCAA----CATCATA-AACGGGGGGAACGCGGGAGGAGGGAGGGGACG-GGCAAAGTACAAAGGTAAAA-TCTTAAAGTTTAC------------------GGGGGCAATGAGTTTCAGATGG--GGGGGTTGGGGTGTTTCAG-ATCGGACTTCAGGG---ATAACA-CAAAACAAC-GGGAGA-CTTCA-CT-ATTTCTTGCTCTG----AAGA----------------CATGT
gi|3 : ataatatTATTACAGCGTC--ACGTCAGGGAT-ATAACAGCGAAACATCGGAGAGG-TTTCAAGTCAATGCTTGCTCTG----AAGA-----------------ATATTGTTTGTTTATACAAATATATATAGACTAATATAATTGGCACGCAAAAGTCTATAAATATAGTAGTGGTTAC-AAAACGTGGAAAAGGACAATCGATGAGAAATTTAAAGAATTAACATGTAATGTTAATCCTGAAACCCGGAGATAATTCTAATATGA-T-AAAATCAAAATTGTAGGACATTTGTTgcatattgt
gi|4 : TTACAGCGTC--ACGTCAGGGAT-ATAACAGCGAAACATCGGAGAGG-TTTCAAGTCAATGCTTGCTCTG----AAGA-----------------ATATTGTTTGTTTATACAAATATATATAGACTAATATAATTGGCACGCAAAAGTCTATAAATATAGTAGTGGTTAC-AAAACGTGGAAAAGGACAATCGATGAGAAATTTAAAGAATTAACATGTAATGTTAATCCTGAAACCCGGAGATAATTCTAATATGA-T-AAAATCAAAATTGTAGGACATTTGTT
gi|5 : aATGGTGAT-AT-G-----GG--CAAGCATCTC----AGGACCCTG--TGGAATTTTC-AACA----------TTTC------AAT-GAA----AC-TC--ACT-G-ACTG--A---G--A---CAT----T-TTTAAGCGGTTAGCA---TCAA--AC-ACTGTTTGAAAA---C-GGTGTC-TGAGAAAACAGAAAACAAAAGCAC---TTGCAA----CAT
gi|6 : tgtaaaagcgaaatcgaaaccaaatctaactatatgaaatcaaacgaaacggaacgtactgtgtaaccgaactctagttatgatagaatCAATAAATTATAAT-AT-G-----GA--CGAACATCTC----AGGCCCCTA--TGAAA--------------------------------------TCGAT-TAGGGTT-G-ACTGATACGGA--C---CAT----TGTTTA--CAATCA--AATAT--A--AT-GTTGCAGGGAGAAGCC-GGTGTC-TGACAAAGTAGAATACAG
gi|7 : gaaacacaaaacgaaagctaccgaaacgaaactatataccgaagtaaacagaaacagaacattgtacaaccatactatattgaattataatagATAAATG----TCCT-G-----GAATCGAGCATCTC----AAAACTCTAGATGAAAGGTGCTCATAACTTATGTGCTATG------AAT-GAACTCGAAATGCGGTT-GGACTGATA---G--CGGTCATGTAATACGTA--CAATGA--A---------AC-ATTGTAGAAAGAAGCCTGATGTCGTGGGAAAGTATGAGAAAAAATCACCCTGCACAATCTCTATCACACA-CG------ACGCGGg
gi|8 : tgaattCAATAAATGATAATTATTGATCATGA--CAAGCATCTCGATCAGAACCCTG--TGAAAGGTAC-CATA----------TATA------GAT-AAA-TCGAT-TTGGGTT-G-AGTGATAC--GGTC---CAT----TATTTA--CAATCA--A---
gi|9 : taccgaaaccaaacaaaaatatataccgatgaaaaaataaacagacaattgtataaccaaactatatttaattatatTAAT-AT-G-----GG--CAAGCATCCT----CGACTCCTG--TGAAATTTTC-CACaca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GAAAAGTTTCAGCATTTCTCTGTCTCTGACAAGGACTAATGTATGGTATGGATATGTGGCGTGGATATTGTAAGTGTTTTAGCAAGACATAGAGACTAATAGTTTATAAACGTGCTATAGTAGT