lowQualScore : 1 11111111111 1 222222 22222222222222222222222 11111 11111 333333333333333333 11 1 3 111 2222222222 444444444444444444444444444 111111 9999999999 1 222 3 1 888888888888888888888888 11 333333333333333333 1111 11111 1111 1111 77777777777 2222222222222 2 333333333333333333333333333333 333333333
lowQualScore : 7 4 3 3 77777777777 3 0 55 666666 44 888888 77777777777777777777777 11111 4 22222 888888888888888888 444 00 0 0 4 55 4 55 4 4 55 222 4 8 8 1 55 4444444444 5 555555555555555555555555555 66 5 0 5 444444 66 8 2 2 9999 3333333333 4 111 4 4 777 5 7 6 9999 4 4 111111111111111111111111 00 222222222222222222 0 0 55 9999 2222 5 11111 4 88 4 4 4 4 3 3 3 3 666 8888 666 88 7777 0000 88 11111111111 3 0000000000000 77 4 0 4 55 333333333333333333333333333333 4 4 4 55 55 77 444444444 2
lowQualScore : . . . . ........... . . .. ...... .. ...... ....................... ..... . ..... .................. ... .. . . . .. . .. . . .. ... . . . . .. .......... . ........................... .. . . . ...... .. . . . .... .......... . ... . . ... . . . .... . . ........................ .. .................. . . .. .... .... . ..... . .. . . . . . . . . ... .... ... .. .... .... .. ........... . ............. .. . . . .. .............................. . . . .. .. .. ......... .
lowQualScore : 0 0 6 6 55555555555 6 5 00 666666 22 888888 77777777777777777777777 11111 4 11111 999999999999999999 999 66 0 2 0 55 0 55 0 0 66 555 0 0 0 9 88 6666666666 0 000000000000000000000000000 99 0 4 0 444444 11 9 2 3 6666 0000000000 1 888 4 4 888 6 8 7 4444 4 4 999999999999999999999999 66 888888888888888888 2 1 77 0000 1111 0 11111 4 99 4 4 0 0 0 3 3 3 444 9999 999 66 1111 4444 66 22222222222 6 2222222222222 33 0 0 0 55 111111111111111111111111111111 0 0 0 55 55 00 222222222 5
consensus : NNNACTGTATAAAAGAA-TAAA-AAT-AAAAAN--G-------CAT-CTAAAGTGT--GAACAAA---T-TGG--TTTT------AT-------TC--------A-----ATGTTC-----AC-AGANG---CTG------------------TCA-A-T--TCGGTAATTCGTTTT-ACCGG-TAA--GA-AAAG-ACAA-AGT-GCCGGT-GCA---GCG-ATAGCAAATAAAGGCC-TT-GCGCTGAATTTTGAC-AAA------ATG-TAC-----------G----TGT--------ACA--A-GGCACAGCCCTGG-GC------CTAA--GG-AAAATGCAAA--T-TAAT-TTAAG--CCCGTAAAT--TTG-T-AT---TGTCATGCCCGCCTGAAA----CTCCTGT-TTTATTT-TTGA---TTG-G--AT---T----ATTCTT--ATT------------------ATTCTCTACATTTCCG--T-TTT--TTCT-ATCG-----TCTTC-TTTC-GAAA-CGT-TTTCC-TC-ACGTGAAG-CCGCC-A-TTTTTCAC---TAA--A--CA--CT----AG----ATAAGTC-GTACGTCA-TCA-GTA--GGTAATTTACTGGATA-GAAT-AA---A------GTAC-GGTATGAC-CTT-CT--AGAACTT-----T--------------GAT-------AAAC-AA-AAA-CTA-CGCA--GTCGACAGTC-AGAC---ACTAATTTTCNTA
Reference ( gi|3 ) : TTAACAGTATAAAAGAA-TAAA-AAT-AAAAAA--G-------CAT-CTAAACTGT--GAACAAA---TATGG--TTTT------AT-------TC--------A-----ATGTTC-----AC-AGATA---CTG------------------TCA-A-T--TCGGTAATTCGTTTTTACCGG-TAA--GA-AAAA-ACAA-AGT-GCCGGT-GCA---GCG-ATAGCAAATAAAGGCC-TT-GCGCTGAATTTTGAC-AAA------ATG-TAC-----------G----TGT--------ACA--A-GGCACAGCCCTAG-GT------CTAA--GG-AAAATGCAAA--T-TAATTTTTAGTTCCCGTTAAA--TTG-T-AT---T-TCATGCCCACCTGAAA----CTCCTGT-TTTATTT-TTGA---TTG-G--ATTAATTA--ATTCTT--ATT------------------ATTCTCTACATTTCTG--T-TTT--TTCT-ATCG-----TCTTC-TTTT-GAAA-CGT-TTTCC-TC-ACATGAAG-CCGCC-A-TTTTTCAC---TGA--A--TA--CT----AG----ATAAGTT-GTACGTCACTCAGGTAC-GGTAATTTACTGGATA-GAAT-AA---A------GTAT-GGTATGAC-C-T-CT--AGAACTT-----T--------------GAT-------AAAC-AA-AAA-CTA-TGCA--GTCGACAGTT-AGAC---ACTACGTTTCGTA
gi|17 : ACTGTATAAAAAAA-TCAA-AAT-CAAAAC--G-------CAT-CTAAAGTTT--GAACAAA---T-TGG--GTTT------AT-------TC--------A-----AT
gi|9 : TATAAAAGAA-TAAA-A-T-AAAAAAC-G-------GAT-ATAAAGTGT--GAACAAA---TG-GG--TTTC------AT-------TC--------A-----ATGTTC-----AC-AGATG---CTG------------------TCA-G-T--TCGGTAATTCGTTTT-ACCAG-TAA--GA-AAAG-ACAA-AGT-GCCGGT-GCA---GCG-ATAGCAAGTAAAGGCC-TT-GC----------------A------ATG-TAC-----------G----TGT--------ACATTA-GGCACAGCCCTAG-GT------CTAA--GG-AAAA-G--------------------CCCGTAAAT--TTG-T-AT---TGTCATG-CCGCCTAAAA----CTACTGT-TTTATTT-TTGA---TTG-G-----GAT-----TTCTT--ATT------------------
gi|18 : TATAAAAGAA-TAAA-AAT-AAAAAT--G-------CAT-CTGAAGTGT--GAACAAA---TTGGG--TTTT------AT-------ttagaaacgttttcctcacgtgaaaccgccatttttcactaacaatagataagtcgtacgtcaggtaatttactggattgtacggtatgaccttctagaactttgataaacaaaaactactctgtcgacagtcagacctaattaattttcgtatattcaaaattcatcaa
gi|19 : acctTATAAAAGAA-TAAA-AAT-AAAAAT--G-------CAT-CTGAAGTGT--GAACAAA---T-TGG--GTTT------AT-------
gi|15 : acctTATAAAAGAA-TAAA-AAT-AAAAAT--GCATCGGACAT-CTGAAGTGT--GAACAAA---TTGGG--TTTT------AT-------
gi|2 : cctTAAAAGAAATAAA-AATTAAAAAC--G-------CAT-C-AAAGTGCTAGAACAAA---T-TGG--TTGT------ATCAATTCCTC--------ATAAAAATCTTCCCACAAC-AGAAT---TTT------------------TCA-AATCGTCGTTCATTCGCTTTTACTGGATAAAAGA-AAAATACAA-GGT-GCCGGC-CCA---G-G-AT-------------C-TT-ACGCT-AATTTT-AC-AAA------ATC-TACAGGCCCTACCAG----TTT--------ACA--ACAGCACAGCCCTGC-GTCATGCCCTAAATGT-AAAATCCAAACGT-TAA--TTAAG---CCGTAGAAT-TTG-TCAT---TGTCATG-CCACCTGAA-------CTTGTGTTGATTT-T------CTG-A--ATGAGC----ATTCTTC-ATC------------------ATTCTC----CTTC-G------------T-ATCA-----TCTTC-TTAC-GAAA-CGTATCTCC-TCTATGTGAAGCCCGCC-ATTTTTTCACTTATAA--A--CACCCT----AGC---ATAACTTCGTACG----TCAAGTA---ACAGTTCAC-GGCT--------------------------TGTGCC-CTT-CTACAGAACTT----------------------T-------AAAC-AA-AAA-CAC-CGCAACGTCGACAGTC-AG
gi|4 : cAAAAGAA-TAAA-AAT-AAAAAA--G-------CAT-CTAAACTGT--GAACAAAAAATATGG--TTTT------AT--------C--------A-----ATGTTC-----AC-AGATA---CTG------------------TCA-A-T--TCG--AATTCGTTTT-ACCGG-TAA--GA-AAAA-ACAA-AGT-GCCGGT-GCA---GCG-ATAGCAAATAAAGGCC-TTTGCGCTGAATTTTGACCAAA------ATG-TAC-----------G----TGT--------ACA--A-GGCACAGCCCTAG-GT------CTAA--GG-AAAATGCAAA--T-TAATTT--AGT--CCGTAAAT--TTG-T-AT---TGTCATGCC-ACCTGAAA----CTCCTGT-TTTATTT-T-GA---TTG-GGAATAAATTA--AATCTT--ATT------------------ATTCTCTACATTT-TG--T-TTT--T-CT-ATCG-----TCTTC-TTTT-GAAA-CGT-TTTCC-TC-ACATGAAG-CCGCC-A-TTTTTCAC---TGA--A--TA--CT----AG----ATAGTTT-GTACGTCACTCAGGTAC-GGTAATTTACTGGATA-GAATAAA---A------GTAT-GGTATGAC-C-T-TC--TGAACTT-----T--------------GAT-------AAAC-AA-AAA-CTA-TGCA--GTCGACAGTT-AGAC---ctaatttcaaaattcaatcaa
gi|1 : taAAGAA-TAAA-ATC-AAAAAAACG-------CATTCTAAAGTGT--GAACAAA---T-TGGGTTTTT------AT-------T---------------GCGCTC-----AT-AGAAA---TTGCTTTTCCCAGGATGTTTTTCA-A-T--TCGGTAATTTGTTTA-ACCG--TAA--GA-AATG-ACAAGAGT-GCCGGC--CAAG-GCGCATAGCAAA--AAAGCT-TT-TCACAAAGTCT--AC-A---------TG-TAC-----------GCCTTTG---------ACA--A-G-CACAGCCCTGGCGC------CTAA--AGTAAAAAGCAAA--TGTAATT---AAAGCCCGCTAAAATTTG-T-ATATGT-CGACGCCCACCTGAAAGAAACTCGTGT-TTTATTT-T-GAGAATTGCG--ATTTCTTATCATTCTCGCATTTCCGTTTTTTTCTAGCAAATTCTCTACATTTCCG--TATGT--TTCT-ATCG-----CCTTTATTTC-GAAAACAT-TTTCC-TC-ATGTGAAG-CCGCCCA-TTTTT-AC---TAA--A--CAA-CT----AG----ATTAGTC-GTAC--CGTTCAAGTA------ATTTAATTGATA-GATA-AA---A------GTAC-GTAATGCC-T-T-CT--AGAACTT-----T--------------GATG------AAAC-AACAAACCTA-CGCA--GTCGACAGTC-A
gi|12 : GAA-TAAACAGT-AAAAAC--G-------AAT-CTAA----------TAAA---TTC----TTTT------AT-------TC--------AC----ATGTTC-----ACGAGATT---CTGGC----------------TCACA-CC-TC-----CTCGATTT--CCGG-TAA--GA-AAAG-AAGA-AGTGGTCGGTAACATGGGCG--TAGCAAATTAAGGCCGTT-GCGC
gi|5 : AA-TAAA-AAT-AAAAAA--G-------CAT-CTAAACTGT--GAACAAAAAATATGG--TTTT------AT--------C--------A-----ATGTTC-----AC-AGATA---CTG------------------TCA-A-T--TCG-TAATTCGTTTT-ACCGG-TAA--GA-AAAA-ACAA-AGT-GCCGGT-GCA---GCG-ATAGCAAATAAAGGCC-TTTGCGCTGAATTTTGACCAAA------ATG-TAC-----------G----TGT--------ACA--A-GGCACAGCCCTAG-GT------CTAA--GG-AAAATGCAAA--T-TAATTT--AGT--CCGTAAAT--TTG-T-AT---TGTCATGCC-ACCTGAAA----CTCCTGT-TTTATTT-T-GA---TTG-GGAATAAATTA--AATCTT--ATT------------------ATTCTCTACATTT-TG--T-TTT--T-CT-ATCG-----TCTTC-TTTT-GAAA-CGT-TTTCC-TC-ACATGAAG-CCGCC-A-TTTTTCAC---TGA--A--TA--CT----AG----ATAGTTT-GTACGTCACTCAGGTAC-GGTAATTTACTGGATA-GAATAAA---A------GTAT-GGTATGAC-C-T-TC--TGAACTT-----T--------------GAT-------AAAC-AA-AAA-CTA-TGCA--GTCGACAGTT-AGA
gi|8 : -AAT-AAAAAT--G-------CGT-CAAAAGTGT--GAATGAA---T-TGG--TTTTTATTCAAT-------TCCTCACAAAA-----ATATTC-----AC-CGATAGCACTA------------------TCA-A-T--TCG---------TTTTATCGG-TAA--GA-AAAG-ATAT-AGT-TCCGGT-GCG---GCG-ATAGCAAATAAAGGCT-T-----CTGAA
gi|7 : --TTTT------AT-------TC--------A-----ATGTTC-----AC-AGAAG---CTG------------------TCA-G-T--TCGGTAATTCGTTTT-ACCAG-TTA--GA-AAAG-ACAA-AGT-GCCAGT-GCA---GCG-ATAGCAAATAAAGGCC-TT-GTGCTGAATTTTGAC-CAA------ATG-TAT-----------G----TGTACAAACTAACA--A-AGCACATCCCTGG-GC------CTAA--GG-AAAATACATA--G-TAA--TTAAG--ACCGTAAAT--TTG-T-AT---TGTCATG-CCGCCTGAAA----CTCCTGT-TTTATTT-TTGA---TTGCG--AT---------TTCTT--ATT------------------ATTCTCTACATTTCCG--T-TTT--TTCT-ATCG-----TCTTC-ATTA-GAAA-CGT-TTTCC-TC-ACGTGAAG-CCACC-A-TTTTTCCC---T-C--A--CA--CT----AG----ATAAGTC-GTACGTCA----------GGTAATTTACTGGATA-GAAT-AA---AGTACATGTAC-GGTATGAC-CTT-CT--AGAACTT-----T--------------GAT-------AAAC-AA-AAA-CTA-CGCA--GTCGACAGTC-AGAC----CTAATTTTCaaatgcatatcaatgaaacccgtaaatttggattgtaatgccgcctgaaactgttttttatttgttgatgtgattttcttattatctttccttgccattttattctgttgtcttctttggaccttttctcatgtgaagctgccatttttcactaacactggttaaataagtcgtatgtcagttatttactggatagataaagtagggtacggcgttttagatttttttatgtttcgtaaagaaaaaaaaaactaccgcaatcacagtcaagacttatttttcttataattaaaattcacaaa
gi|6 : --TTTT------AT-------TC--------A-----ATGTTC-----AC-AGAAG---CTG------------------TCA-G-T--TCGGTAATTCGTTTT-ACCAG-TTA--GA-AATG-ACAA-AGT-GCCAGT-GCA---GCG-ATAGCAAATAAAGGCCTTT-GTGCTGAATTTTGAC--CA------ATGATA------------G----TGTACAAACTAACA--A-AGCACATCCCTGG-GC------CTAA--GGAAAAATACATA--G-TAA---TAAG--ACCGTAAAT--TTGTT-AT---TGTCATG-CCGCCTGAAA----CTCCTGT-TTTATTT-TTGA---TTGCG--AT---------TTCTT--ATT------------------ATTCTCTTAATTTCCGTTT-TTT--TTCT-ATCG-----TCTTC-ATTA-GAAA-CGT-TTTCCTTC-ACGTGAAG-CCCAC-A-TTTTTCCC---T-C--A--CA--CT----AG----ATAAGT-----CGTTAC----GTACAGGTAATTTACTGGATAGGAAT-AATGTACAT---GTAC-GGTATGAC-CTT-CT--AGAACTT-----T--------------G-T-------AAAC-AA-AAA-CTA-CGCA--GTCGACAGTC-AGAC---tggtattcaaaattcatcaa
gi|10 : CGGTAATTCGTTTT-ACCGG-TAA--GATAGAG-ACAA-AGT-GCCGG---CA---GCG-ATAGCAAATAAAGCCC-TT-ACGCTAAATTTTTAC-AAAATCTACATG-TAC-----------G----TTT--------ACA--A-AGCACAGCCCTGG-GC------CTAA--GG-TAAAAGCAAA--T-TAA--TTAAG--CCTGTAAAT--TTG-T-AT---TGTCATG-CCACCTGAAA----CTCGTGT-TTTAT----------------------------TTCTT--ATC------------------ATTCTCTACATTTCcaattttctggtattcaaattcatcaa
gi|8 : --GA-AAAATGCATA--T-CAAT----GAAACCCGTAAAT--TTG-G-AT---TGTAATGCC-GCCTGAAA----CTGTT-T-TTTATTTGTTGA---TGT-G--ATT--------TTCTT--ATT------------------AT-CTTTCC-TTGCCA--T-TTTA-TTCT-GTTG-----TCTTC-TTTG-GA---CCT-TTTC--TC-ATGTGAAG-CTGCC-A-TTTTTCAC---T-A--A--CA--CT----GGTTAAATAAGTC-GTATGTCA-----------GTTATTTACTGGATA-G-AT-AA---A------GTAG-GGTACGGCGT-T-TT--AGATTTT-----TTTATGTTTCGTAAAGA--------AAAA-AA-AAA-CTACCGCA--ATC-ACAGTCAAGAC----TTATTTTTCTTA
gi|9 : aataaaaatgcgtcaaaagtgtgaatgaattggtttttattcaattcctcacaaaaatattcaccgatagcactatcaattcgttttatcggtaagaaaagatatagttccggtgcggcgatagcaaataaaggcttctCTG--T-TTTATTTTTGATTGGGATTTCTTA-TTTTAGAAA-CGT-TTTCC-TC-ACGTGAAA-CCGCC-A-TTTTTCAC---T-A--A--CA--AT----AG----ATAAGTC-GTACGTCA----------GGTAATTTACTGGAT-----T-------------GTAC-GGTATGAC-C-TTCT--AGAACTT-----T--------------GAT-------AAAC-AA-AAA-CTA-CTCT--GTCGACAGTC-AGACCTAATTAATTTTCGTAtaattaaaattcacaaa
gi|21 : tataaaagaataaaataaaaaacggatataaagtgtgaacaaatgggtttcattcaatgttcacagatgctgtcagttcggtaattcgttttaccagtaagaaaagacaaagtgccggtgcagcgatagcaagtaaaggccttgcaatgtacgtgtacattaggcacagccctaggtctaaggaaaagcccgtaaatttgtattgtcatgccgcctaaaactaCA-----TCTTC-TTAC-GAAA-CGT-TTTCC-TC-ATGTGAAG-CCGCC-A-TTtattcaaaattcatcaa
gi|22 : CC-TC-ATGTGAAG-CCGCC-A-TTTTTCAC---T-A--A--CA--CT----AG----A
gi|11 : TGAAG-CCGCC-A-TTTTTCAG---TAA--A--CA--CTTCTTAG----ATAAGAC-GGACGTCA-----GTA-----AATTTACTGGATA-GAAT-AA---A------GTATGGGTATGAC-CTT-TT--AGAACTTTTATGT--------------GATGTAAAGAAAAC-AA-AAA-CTA-CGCA--GTCGACAGTC---AC---ACT
gi|14 : G-CTGCC-A-TTCCTCAC---TAATCACTTA--TT----GG----ATAAGAC-GTACATC-TTTA---------AATTTACTGGATA-AAAT-AA---G------GTtaattttcttgtattcaaattcatcaaa
gi|13 : T----AG----ATAAGTC-GTATGTCA----------AGTAAATTATTGAATA-GAAT-AA---A------TTAC-GGTGTGAC-CTT-CT--AGAACTT-----T--------------GAT-------AAACAAA-AAA-CTA-TGCA--GTCGACAGTC-AG
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): GCTGCCTTCCCTCATAATCACTTATTGGAAGACGTACACTTAAATTTACTGGATAAAATAAGGT
Unaligned ( gi|20 ): GTAGACAGTCAGTATCTAATTAATATCGTATATATCAAAATTCATCAA
Alignments
lowQualScore : 1111111 11111 11111 11111 333333333333333333 111111 111111111 111 111 111111 333333333333333333333333333 111111 1111 1 1 11 666666666666666666666 222222222222222222 11 1 1111 66666666666 1111111111 333333333333333333333333 11111111
lowQualScore : 4 3 3 44 3 1 0000000 3 44 22222 6 33 2 9999999 22222 4 00000 4 44 555555555555555555 222222 5 444444444 3 3 3 55 3 3 3 3 44 111 3 7 7 0 3 222 222222 4 555555555555555555555555555 66 4 4 111111 55 8 1 7777 6666 0 55 55 4 4 4 4 4 0 0 8888 4 4 22 777 4 444444444444444444444 99 999999999999999999 2 4 66 5 11 4 77 4 4 3 3 3 3 3 555 1 3 44 3333 9999 3 3 3 88888888888 3 6 7777777777 0 3 55 111111111111111111111111 3 3 3 3 55 3 99999999 1
lowQualScore : . . . .. . . ....... . .. ..... . .. . ....... ..... . ..... . .. .................. ...... . ......... . . . .. . . . . .. ... . . . . . ... ...... . ........................... .. . . ...... .. . . .... .... . .. .. . . . . . . . .... . . .. ... . ..................... .. .................. . . .. . .. . .. . . . . . . . ... . . .. .... .... . . . ........... . . .......... . . .. ........................ . . . . .. . ........ .
lowQualScore : 0 6 3 66 3 0 8888888 3 66 77777 7 99 9 3333333 77777 0 00000 0 00 000000000000000000 888888 1 555555555 6 6 6 00 6 6 6 6 22 444 6 3 3 7 9 444 888888 4 888888888888888888888888888 11 4 0 555555 55 0 2 7777 1111 8 55 55 0 0 0 0 0 0 0 5555 0 0 11 000 0 000000000000000000000 55 555555555555555555 0 5 99 0 22 0 99 0 0 6 6 1 1 1 888 1 3 66 1111 6666 3 3 3 88888888888 3 7 5555555555 4 6 00 333333333333333333333333 6 6 6 6 00 6 33333333 0
consensus : NNNACNGTATAAAAGAA-TAAA-A--AT-AAAAACG-------CAT-CTAAAGTGT--GAACAAA---T-T-GG--TTTT-AT-------TCA-----ATGT-TC-----AC-AGANACTG------------------TCA-A-T--TCGGTA---------ATTCG-TTTT-ACCGG-TAA--GA-AAAG-ACAA-AGT-GCCGGT-GCA---GCG-ATAGCAAATAAAGGCC-TT-GCGCTGAATTTTGAC-AAAAT------G-TAC-----------G----TGT--------ACA--A-GGCACAGCCCTGG-G------CCTAA--GG-AAAATGCAAA--T-TAA-TTTAAG--CCCGT--A-AATTTG-T-AT-TGTC-ATGCCCGCCTGAAA----CTCCTGTTTT-ATTT-T-TGA---TT-G-G------ATT-------AT-TCTT--ATT------------------ATTCTCTACATTTCCG--T-TTT-TTCTATCGTCTTC-TTTC-GAAA-CGT-TTTCC-TC-ACGTGAAG-CCG-CCA-TTTTTCAC---TAAAC-A--CT----AG----ATAA-GTCG-TA-CGTCA-TCA-GTA-GGTAATTTACTGGATA-GAAT-AA---A------GTACGG-TATGACCTTCT--AGAACTTT--------------GAT-------AAAC-AA-AAA-CTA-CGCA--GTCGACAGTC-AGAC---AC-TAATTTTCNTA
Reference ( family-947 ) : NNNACTGTATAAAAGAA-TAAA-A--AT-AAAAANG-------CAT-CTAAAGTGT--GAACAAA---T-T-GG--TTTT-AT-------TCA-----ATGT-TC-----AC-AGANGCTG------------------TCA-A-T--TCGGTA---------ATTCG-TTTT-ACCGG-TAA--GA-AAAG-ACAA-AGT-GCCGGT-GCA---GCG-ATAGCAAATAAAGGCC-TT-GCGCTGAATTTTGAC-AAAAT------G-TAC-----------G----TGT--------ACA--A-GGCACAGCCCTGG-G------CCTAA--GG-AAAATGCAAA--T-TAA-TTTAAG--CCCGT--A-AATTTG-T-AT-TGTC-ATGCCCGCCTGAAA----CTCCTGTTTT-ATTT-T-TGA---TT-G-G------ATT-------AT-TCTT--ATT------------------ATTCTCTACATTTCCG--T-TTT-TTCTATCGTCTTC-TTTC-GAAA-CGT-TTTCC-TC-ACGTGAAG-CCG-CCA-TTTTTCAC---TAAAC-A--CT----AG----ATAA-GTCG-TA-CGTCA-TCA-GTA-GGTAATTTACTGGATA-GAAT-AA---A------GTACGG-TATGACCTTCT--AGAACTTT--------------GAT-------AAAC-AA-AAA-CTA-CGCA--GTCGACAGTC-AGAC---AC-TAATTTTCNTA
gi|1 : AAGAA-TAAA-ATCAA-AAAAACG-------CATTCTAAAGTGT--GAACAAA---T-T-GGGTTTTT-AT-------T-------GCGC-TC-----AT-AGAAATTGCTTTTCCCAGGATGTTTTTCA-A-T--TCGGTA---------ATTTG-TTTA-ACCG--TAA--GA-AATG-ACAAGAGT-GCCGGC--CAAG-GCGCATAGCAAA--AAAGCT-TT-TCACAAAGTCT--AC-A---T------G-TAC-----------GCCTTTG---------ACA--A-G-CACAGCCCTGGCG------CCTAA--AGTAAAAAGCAAA--TGTAA-TTAAAG--CCCGCTAA-AATTTG-T-ATATGTCGACGCCCACCTGAAAGAAACTCGTGTTTT-ATTT-T--GAGAATT-GCG------ATTTCTTATCAT-TCTCGCATTTCCGTTTTTTTCTAGCAAATTCTCTACATTTCCG--TATGT-TTCTATCGCCTTTATTTC-GAAAACAT-TTTCC-TC-ATGTGAAG-CCGCCCA-TTTTT-AC---TAAACAA--CT----AG----ATTA-GTCG-TACCGT---TC----A-AGTAATTTAATTGATA-GATA-AA---A------GTACGT-AATG-CCTTCT--AGAACTTT--------------GATG------AAAC-AACAAACCTA-CGCA--GTCGACAGTC-A
gi|10 : CGGTA---------ATTCG-TTTT-ACCGG-TAA--GATAGAG-ACAA-AGT-GCCGG---CA---GCG-ATAGCAAATAAAGCCC-TT-ACGCTAAATTTTTAC-AAAATCTACATG-TAC-----------G----TTT--------ACA--A-AGCACAGCCCTGG-G------CCTAA--GG-TAAAAGCAAA--T-TAA--TTAAG--CCTGT--A-AATTTG-T-AT-TGTC-ATG-CCACCTGAAA----CTCGTGTTTT-AT----------------------------------T-TCTT--ATC------------------ATTCTCTACATTTC
gi|11 : TGAAG-CCG-CCA-TTTTTCAG---TAAAC-A--CTTCTTAG----ATAA-GACG-GA-CGTCA-----GTA----AATTTACTGGATA-GAAT-AA---A------GTATGGGTATGACCTTTT--AGAACTTTTATGT---------GATGTAAAGAAAAC-AA-AAA-CTA-CGCA--GTCGACAGTC---AC---ACTTAATTTTCT
gi|12 : GAA-TAAACA--GT-AAAAACG-------AAT-CTAA----------TAAA---T-T-C---TTTT-AT-------TCAC----ATGT-TC-----ACGAGATTCTGGC----------------TCACA-CC-TC--------------CTCG-ATTT--CCGG-TAA--GA-AAAG-AAGA-AGTGGTCGGTAACATGGGCG--TAGCAAATTAAGGCCGTT-GCGCgtattcaaattcatcaaa
gi|13 : T----AG----ATAA-GTCG-TA-TGTCA---A-GTA----AATT-ATTGAATA-GAAT-AA---A------TTACGG-TGTGACCTTCT--AGAACTTT--------------GAT-------AAACAAA-AAA-CTA-TGCA--GTCGACAGTC-AG-C---CT-TAATTTTC
gi|14 : agG-CTG-CCA-TTCCTCAC---TAATC-A--CTTATTGG----ATAA-GACG-TA-CATCT-TTA--------AATTTACTGGATA-AAAT-AA---G------GTaaaattcatcaa
gi|15 : TATAAAAGAA-TAAA-A--AT-AAAAATGCATCGGACAT-CTGAAGTGT--GAACAAA---T-TGGG--TTTT-AT-------
gi|17 : cctACTGTATAAAAAAA-TCAA-A--AT-CAAAACG-------CAT-CTAAAGTTT--GAACAAA---T-T-GG--GTTT-AT-------TCA-----AT
gi|18 : TATAAAAGAA-TAAA-A--AT-AAAAATG-------CAT-CTGAAGTGT--GAACAAA---T-TGGG--TTTT-AT-------
gi|19 : acctTATAAAAGAA-TAAA-A--AT-AAAAATG-------CAT-CTGAAGTGT--GAACAAA---T-T-GG--GTTT-AT-------
gi|2 : acctTAAAAGAAATAAA-A--ATTAAAAACG-------CAT-C-AAAGTGCTAGAACAAA---T-T-GG--TTGT-ATCAATTCCTCATAAAAATCT-TCCCACAAC-AGAATTTT------------------TCA-AATCGTCGTTC---------ATTCGCTTTT-ACTGGATAAAAGA-AAAATACAA-GGT-GCCGGC-CCA---G-G-AT-------------C-TT-ACGCT-AATTTT-AC-AAAAT------C-TACAGGCCCTACCAG----TTT--------ACA--ACAGCACAGCCCTGC-GTCATGCCCTAAATGT-AAAATCCAAACGT-TAA-TT-AAG--CC-GT--AGAATTTG-TCAT-TGTC-ATGCC-ACCTGAA-------CTTGTGTTGATTT-TCTGA---AT-G--------AGC-------AT-TCTTC-ATC------------------ATTCTCC-----TTCG--T---------ATCATCTTC-TTAC-GAAA-CGTATCTCC-TCTATGTGAAGCCCG-CCATTTTTTCACTTATAAAC-ACCCT----AGC---ATAACTTCG-TA-CGTCA---A-GTA--ACAGTTCAC-GGCT--------------------------TGTGCCCTTCTACAGAACTT-----------------T-------AAAC-AA-AAA-CAC-CGCAACGTCGACAGTC-AG------C-TAATTT
gi|21 : cCATCTTC-TTAC-GAAA-CGT-TTTCC-TC-ATGTGAAG-CCG-CCA-TTcaaaattcaatcaa
gi|22 : CC-TC-ATGTGAAG-CCG-CCA-TTTTTCAC---T-AAC-A--CT----AG----A
gi|3 : ACAGTATAAAAGAA-TAAA-A--AT-AAAAAAG-------CAT-CTAAACTGT--GAACAAA---TAT-GG--TTTT-AT-------TCA-----ATGT-TC-----AC-AGATACTG------------------TCA-A-T--TCGGTA---------ATTCG-TTTTTACCGG-TAA--GA-AAAA-ACAA-AGT-GCCGGT-GCA---GCG-ATAGCAAATAAAGGCC-TT-GCGCTGAATTTTGAC-AAAAT------G-TAC-----------G----TGT--------ACA--A-GGCACAGCCCTAG-G------TCTAA--GG-AAAATGCAAA--T-TAATTTTTAGTTCCCGT--T-AAATTG-T-AT-T-TC-ATGCCCACCTGAAA----CTCCTGTTTT-ATTT-T-TGA---TT-G-G------ATTAATTA--AT-TCTT--ATT------------------ATTCTCTACATTTCTG--T-TTT-TTCTATCGTCTTC-TTTT-GAAA-CGT-TTTCC-TC-ACATGAAG-CCG-CCA-TTTTTCAC---TGAAT-A--CT----AG----ATAA-GTTG-TA-CGTCACTCAGGTACGGTAATTTACTGGATA-GAAT-AA---A------GTATGG-TATGACC-TCT--AGAACTTT--------------GAT-------AAAC-AA-AAA-CTA-TGCA--GTCGACAGTT-AGAC---AC-TACGTTTCGTA
gi|4 : ttaAAAAGAA-TAAA-A--AT-AAAAAAG-------CAT-CTAAACTGT--GAACAAAAAATAT-GG--TTTT-AT--------CA-----ATGT-TC-----AC-AGATACTG------------------TCA-A-T--TCG--A---------ATTCG-TTTT-ACCGG-TAA--GA-AAAA-ACAA-AGT-GCCGGT-GCA---GCG-ATAGCAAATAAAGGCC-TTTGCGCTGAATTTTGACCAAAAT------G-TAC-----------G----TGT--------ACA--A-GGCACAGCCCTAG-G------TCTAA--GG-AAAATGCAAA--T-TAA-TTTA-G--TCCGT--A-AATTTG-T-AT-TGTC-ATGCC-ACCTGAAA----CTCCTGTTTT-ATTT-T--GA---TT-G-GGAATAAATT-------AAATCTT--ATT------------------ATTCTCTACATTTT-G--T-TTT--TCTATCGTCTTC-TTTT-GAAA-CGT-TTTCC-TC-ACATGAAG-CCG-CCA-TTTTTCAC---TGAAT-A--CT----AG----ATAG-TTTG-TA-CGTCACTCAGGTACGGTAATTTACTGGATA-GAATAAA---A------GTATGG-TATGACCTTCT---GAACTTT--------------GAT-------AAAC-AA-AAA-CTA-TGCA--GTCGACAGTT-AGAC---
gi|5 : taAA-TAAA-A--AT-AAAAAAG-------CAT-CTAAACTGT--GAACAAAAAATAT-GG--TTTT-AT--------CA-----ATGT-TC-----AC-AGATACTG------------------TCA-A-T--TCG-TA---------ATTCG-TTTT-ACCGG-TAA--GA-AAAA-ACAA-AGT-GCCGGT-GCA---GCG-ATAGCAAATAAAGGCC-TTTGCGCTGAATTTTGACCAAAAT------G-TAC-----------G----TGT--------ACA--A-GGCACAGCCCTAG-G------TCTAA--GG-AAAATGCAAA--T-TAA-TTTA-G--TCCGT--A-AATTTG-T-AT-TGTC-ATGCC-ACCTGAAA----CTCCTGTTTT-ATTT-T--GA---TT-G-GGAATAAATT-------AAATCTT--ATT------------------ATTCTCTACATTTT-G--T-TTT--TCTATCGTCTTC-TTTT-GAAA-CGT-TTTCC-TC-ACATGAAG-CCG-CCA-TTTTTCAC---TGAAT-A--CT----AG----ATAG-TTTG-TA-CGTCACTCAGGTACGGTAATTTACTGGATA-GAATAAA---A------GTATGG-TATGACCTTCT---GAACTTT--------------GAT-------AAAC-AA-AAA-CTA-TGCA--GTCGACAGTT-AGA
gi|6 : --TTTT-AT-------TCA-----ATGT-TC-----AC-AGAAGCTG------------------TCA-G-T--TCGGTA---------ATTCG-TTTT-ACCAG-TTA--GA-AATG-ACAA-AGT-GCCAGT-GCA---GCG-ATAGCAAATAAAGGCCTTT-GTGCTGAATTTTGAC--CAAT------GATA------------G----TGTACAAACTAACA--A-AGCACATCCCTGG-G------CCTAA--GGAAAAATACATA--G-TAA---TAAG--ACCGT--A-AATTTGTT-AT-TGTC-ATG-CCGCCTGAAA----CTCCTGTTTT-ATTT-T-TGA---TT-GCG------AT---------T-TCTT--ATT------------------ATTCTCTTAATTTCCGTTT-TTT-TTCTATCGTCTTC-ATTA-GAAA-CGT-TTTCCTTC-ACGTGAAG-CCC-ACA-TTTTTCCC---T-CAC-A--CT----AG----ATAA-GTCGTTA-CGT-------ACA-GGTAATTTACTGGATAGGAAT-AATGTACAT---GTACGG-TATGACCTTCT--AGAACTTT--------------G-T-------AAAC-AA-AAA-CTA-CGCA--GTCGACAGTC-AG-----AC-CAATTTTC
gi|7 : --TTTT-AT-------TCA-----ATGT-TC-----AC-AGAAGCTG------------------TCA-G-T--TCGGTA---------ATTCG-TTTT-ACCAG-TTA--GA-AAAG-ACAA-AGT-GCCAGT-GCA---GCG-ATAGCAAATAAAGGCC-TT-GTGCTGAATTTTGAC-CAAAT------G-TAT-----------G----TGTACAAACTAACA--A-AGCACATCCCTGG-G------CCTAA--GG-AAAATACATA--G-TAA--TTAAG--ACCGT--A-AATTTG-T-AT-TGTC-ATG-CCGCCTGAAA----CTCCTGTTTT-ATTT-T-TGA---TT-GCG------AT---------T-TCTT--ATT------------------ATTCTCTACATTTCCG--T-TTT-TTCTATCGTCTTC-ATTA-GAAA-CGT-TTTCC-TC-ACGTGAAG-CCA-CCA-TTTTTCCC---T-CAC-A--CT----AG----ATAA-GTCG-TA-CGTC--------A-GGTAATTTACTGGATA-GAAT-AA---AGTACATGTACGG-TATGACCTTCT--AGAACTTT--------------GAT-------AAAC-AA-AAA-CTA-CGCA--GTCGACAGTC-AGAC----C-TAATTTTCtggtattcaaattcatcaa
gi|8 : -A--AT-AAAAATG-------CGT-CAAAAGTGT--GAATGAA---T-T-GG--TTTTTAT-------TCA-----ATTCCTC-----AC-AAAAATAT------------------TCA------CCGATAGCACTATCAATTCG-TTTT-ATCGG-TAA--GA-AAAG-ATAT-AGT-TCCGGT-GCG---GCG-ATAGCAAATAAAGGCT-T-----CTGAAtggtattcaaaattcatcaa
gi|8 : G-G------CTTCT--GA-AAAATGCATA--T-CAA-TG-AAA--CCCGT--A-AATTTG-G-AT-TGTA-ATGCC-GCCTGAAA----CTGTT-TTTT-ATTTGT-TGA---TG-T-G------ATT--------T-TCTT--ATT------------------AT-CTTTCC-TTGCCA--T-TTTATTCTGTTGTCTTC-TTTG-GA---CCT-TTTC--TC-ATGTGAAG-CTG-CCA-TTTTTCAC---T-AAC-A--CT----GGTTAAATAA-GTCG-TA-TGTCA----------GTTATTTACTGGATA-G-AT-AA---A------GTAGGG-TACGGCGTTTT--AGATTTTTTTATGTTTCGTAAAGA--------AAAA-AA-AAA-CTACCGCA--ATC-ACAGTCAAGAC----T-TATTTTTCTTAaaatgcatatcaatgaaacccgtaaatttggattgtaatgccgcctgaaactgttttttatttgttgatgtgattttcttattatctttccttgccattttattctgttgtcttctttggaccttttctcatgtgaagctgccatttttcactaacactggttaaataagtcgtatgtcagttatttactggatagataaagtagggtacggcgttttagatttttttatgtttcgtaaagaaaaaaaaaactaccgcaatcacagtcaagacttatttttcttataattaaaattcacaaa
gi|9 : aataaaaatgcgtcaaaagtgtgaatgaattggtttttattcaattcctcacaaaaatattcaccgatagcactatcaattcgttttatcggtaagaaaagatatagttccggtgcggcgatagcaaataaaTATAAAAGAA-TAAA-A--TA-AAAAACG-------GAT-ATAAAGTGT--GAACAAA---T-G-GG--TTTC-AT-------TCA-----ATGT-TC-----AC-AGATGCTG------------------TCA-G-T--TCGGTA---------ATTCG-TTTT-ACCAG-TAA--GA-AAAG-ACAA-AGT-GCCGGT-GCA---GCG-ATAGCAAGTAAAGGCC-TT-GC----------------AAT------G-TAC-----------G----TGT--------ACATTA-GGCACAGCCCTAG-G------TCTAA--GG-AA-------------------AAG--CCCGT--A-AATTTG-T-AT-TGTC-ATG-CCGCCTAAAA----CTACTGTTTT-ATTT-T-TGA---TTGG-G------AT---------T-TCTT--ATT------------------taattaaaattcacaaa
gi|9 : TCTTA-TTTTAGAAA-CGT-TTTCC-TC-ACGTGAAA-CCG-CCA-TTTTTCAC---TAA-C-A--AT----AG----ATAA-GTCG-TA-CGTCA---------GGTAATTTACTGGAT-----T-------------GTACGG-TATGACCTTCT--AGAACTTT--------------GAT-------AAAC-AA-AAA-CTA-CTCT--GTCGACAGTC-AGACCTAAT-TAATTTTCGTAttagaaacgttttcctcacgtgaaaccgccatttttcactaacaatagataagtcgtacgtcaggtaatttactggattgtacggtatgaccttctagaactttgataaacaaaaactactctgtcgacagtcagacctaattaattttcgtatattcaaaattcatcaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GCTGCCTTCCCTCATAATCACTTATTGGAAGACGTACACTTAAATTTACTGGATAAAATAAGGT
Unaligned ( gi|20 ): GTAGACAGTCAGTATCTAATTAATATCGTATATATCAAAATTCATCAA
Alignments
lowQualScore : 1111111 11111 11111 11111 333333333333333333 111111 111111111 111 111 111111 333333333333333333333333333 111111 1111 1 1 11 666666666666666666666 222222222222222222 11 1 1111 66666666666 1111111111 333333333333333333333333 11111111
lowQualScore : 33 3 3 44 3 1 0000000 3 44 22222 6 33 2 9999999 22222 4 00000 4 11 555555555555555555 222222 5 444444444 3 3 3 55 3 3 3 3 44 111 3 7 7 0 3 222 222222 4 555555555555555555555555555 66 4 4 111111 55 8 1 7777 6666 0 55 55 4 4 4 4 4 0 0 8888 4 4 22 777 4 444444444444444444444 99 999999999999999999 2 4 66 5 11 4 77 4 4 3 3 3 3 3 555 1 3 44 3333 9999 3 3 3 88888888888 3 6 7777777777 0 3 55 111111111111111111111111 3 3 3 3 55 3 99999999 1
lowQualScore : .. . . .. . . ....... . .. ..... . .. . ....... ..... . ..... . .. .................. ...... . ......... . . . .. . . . . .. ... . . . . . ... ...... . ........................... .. . . ...... .. . . .... .... . .. .. . . . . . . . .... . . .. ... . ..................... .. .................. . . .. . .. . .. . . . . . . . ... . . .. .... .... . . . ........... . . .......... . . .. ........................ . . . . .. . ........ .
lowQualScore : 55 6 3 66 3 6 8888888 3 66 77777 7 99 9 3333333 77777 0 00000 0 77 000000000000000000 888888 1 555555555 6 6 6 00 6 6 6 6 22 444 6 3 3 7 9 444 888888 4 888888888888888888888888888 11 4 0 555555 55 0 2 7777 1111 8 55 55 0 0 0 0 0 0 0 5555 0 0 11 000 0 000000000000000000000 55 555555555555555555 0 5 99 0 22 0 99 0 0 6 6 1 1 1 888 1 3 66 1111 6666 3 3 3 88888888888 3 7 5555555555 4 6 00 333333333333333333333333 6 6 6 6 00 6 33333333 0
consensus : NNNACCGTATAAAAGAA-TAAA-A--AT-AAAAACG-------CAT-CTAAAGTGT--GAACAAA---T-T-GG--TTTT-AT-------TCA-----ATGT-TC-----AC-AGANACTG------------------TCA-A-T--TCGGTA---------ATTCG-TTTT-ACCGG-TAA--GA-AAAG-ACAA-AGT-GCCGGT-GCA---GCG-ATAGCAAATAAAGGCC-TT-GCGCTGAATTTTGAC-AAAAT------G-TAC-----------G----TGT--------ACA--A-GGCACAGCCCTGG-G------CCTAA--GG-AAAATGCAAA--T-TAA-TTTAAG--CCCGT--A-AATTTG-T-AT-TGTC-ATGCCCGCCTGAAA----CTCCTGTTTT-ATTT-T-TGA---TT-G-G------ATT-------AT-TCTT--ATT------------------ATTCTCTACATTTCCG--T-TTT-TTCTATCGTCTTC-TTTC-GAAA-CGT-TTTCC-TC-ACGTGAAG-CCG-CCA-TTTTTCAC---TAAAC-A--CT----AG----ATAA-GTCG-TA-CGTCA-TCA-GTA-GGTAATTTACTGGATA-GAAT-AA---A------GTACGG-TATGACCTTCT--AGAACTTT--------------GAT-------AAAC-AA-AAA-CTA-CGCA--GTCGACAGTC-AGAC---AC-TAATTTTCNTA
Reference ( family-947 ) : NNNACNGTATAAAAGAA-TAAA-A--AT-AAAAACG-------CAT-CTAAAGTGT--GAACAAA---T-T-GG--TTTT-AT-------TCA-----ATGT-TC-----AC-AGANACTG------------------TCA-A-T--TCGGTA---------ATTCG-TTTT-ACCGG-TAA--GA-AAAG-ACAA-AGT-GCCGGT-GCA---GCG-ATAGCAAATAAAGGCC-TT-GCGCTGAATTTTGAC-AAAAT------G-TAC-----------G----TGT--------ACA--A-GGCACAGCCCTGG-G------CCTAA--GG-AAAATGCAAA--T-TAA-TTTAAG--CCCGT--A-AATTTG-T-AT-TGTC-ATGCCCGCCTGAAA----CTCCTGTTTT-ATTT-T-TGA---TT-G-G------ATT-------AT-TCTT--ATT------------------ATTCTCTACATTTCCG--T-TTT-TTCTATCGTCTTC-TTTC-GAAA-CGT-TTTCC-TC-ACGTGAAG-CCG-CCA-TTTTTCAC---TAAAC-A--CT----AG----ATAA-GTCG-TA-CGTCA-TCA-GTA-GGTAATTTACTGGATA-GAAT-AA---A------GTACGG-TATGACCTTCT--AGAACTTT--------------GAT-------AAAC-AA-AAA-CTA-CGCA--GTCGACAGTC-AGAC---AC-TAATTTTCNTA
gi|1 : AAGAA-TAAA-ATCAA-AAAAACG-------CATTCTAAAGTGT--GAACAAA---T-T-GGGTTTTT-AT-------T-------GCGC-TC-----AT-AGAAATTGCTTTTCCCAGGATGTTTTTCA-A-T--TCGGTA---------ATTTG-TTTA-ACCG--TAA--GA-AATG-ACAAGAGT-GCCGGC--CAAG-GCGCATAGCAAA--AAAGCT-TT-TCACAAAGTCT--AC-A---T------G-TAC-----------GCCTTTG---------ACA--A-G-CACAGCCCTGGCG------CCTAA--AGTAAAAAGCAAA--TGTAA-TTAAAG--CCCGCTAA-AATTTG-T-ATATGTCGACGCCCACCTGAAAGAAACTCGTGTTTT-ATTT-T--GAGAATT-GCG------ATTTCTTATCAT-TCTCGCATTTCCGTTTTTTTCTAGCAAATTCTCTACATTTCCG--TATGT-TTCTATCGCCTTTATTTC-GAAAACAT-TTTCC-TC-ATGTGAAG-CCGCCCA-TTTTT-AC---TAAACAA--CT----AG----ATTA-GTCG-TACCGT---TC----A-AGTAATTTAATTGATA-GATA-AA---A------GTACGT-AATG-CCTTCT--AGAACTTT--------------GATG------AAAC-AACAAACCTA-CGCA--GTCGACAGTC-A
gi|10 : CGGTA---------ATTCG-TTTT-ACCGG-TAA--GATAGAG-ACAA-AGT-GCCGG---CA---GCG-ATAGCAAATAAAGCCC-TT-ACGCTAAATTTTTAC-AAAATCTACATG-TAC-----------G----TTT--------ACA--A-AGCACAGCCCTGG-G------CCTAA--GG-TAAAAGCAAA--T-TAA--TTAAG--CCTGT--A-AATTTG-T-AT-TGTC-ATG-CCACCTGAAA----CTCGTGTTTT-AT----------------------------------T-TCTT--ATC------------------ATTCTCTACATTTC
gi|11 : TGAAG-CCG-CCA-TTTTTCAG---TAAAC-A--CTTCTTAG----ATAA-GACG-GA-CGTCA-----GTA----AATTTACTGGATA-GAAT-AA---A------GTATGGGTATGACCTTTT--AGAACTTTTATGT---------GATGTAAAGAAAAC-AA-AAA-CTA-CGCA--GTCGACAGTC---AC---ACTTAATTTTCT
gi|12 : GAA-TAAACA--GT-AAAAACG-------AAT-CTAA----------TAAA---T-T-C---TTTT-AT-------TCAC----ATGT-TC-----ACGAGATTCTGGC----------------TCACA-CC-TC--------------CTCG-ATTT--CCGG-TAA--GA-AAAG-AAGA-AGTGGTCGGTAACATGGGCG--TAGCAAATTAAGGCCGTT-GCGCgtattcaaattcatcaaa
gi|13 : T----AG----ATAA-GTCG-TA-TGTCA---A-GTA----AATT-ATTGAATA-GAAT-AA---A------TTACGG-TGTGACCTTCT--AGAACTTT--------------GAT-------AAACAAA-AAA-CTA-TGCA--GTCGACAGTC-AG-C---CT-TAATTTTC
gi|14 : agG-CTG-CCA-TTCCTCAC---TAATC-A--CTTATTGG----ATAA-GACG-TA-CATCT-TTA--------AATTTACTGGATA-AAAT-AA---G------GTaaaattcatcaa
gi|15 : TATAAAAGAA-TAAA-A--AT-AAAAATGCATCGGACAT-CTGAAGTGT--GAACAAA---T-TGGG--TTTT-AT-------
gi|17 : cctACTGTATAAAAAAA-TCAA-A--AT-CAAAACG-------CAT-CTAAAGTTT--GAACAAA---T-T-GG--GTTT-AT-------TCA-----AT
gi|18 : ACCTTATAAAAGAA-TAAA-A--AT-AAAAATG-------CAT-CTGAAGTGT--GAACAAA---T-TGGG--TTTT-AT-------
gi|19 : ACCTTATAAAAGAA-TAAA-A--AT-AAAAATG-------CAT-CTGAAGTGT--GAACAAA---T-T-GG--GTTT-AT-------
gi|2 : TAAAAGAAATAAA-A--ATTAAAAACG-------CAT-C-AAAGTGCTAGAACAAA---T-T-GG--TTGT-ATCAATTCCTCATAAAAATCT-TCCCACAAC-AGAATTTT------------------TCA-AATCGTCGTTC---------ATTCGCTTTT-ACTGGATAAAAGA-AAAATACAA-GGT-GCCGGC-CCA---G-G-AT-------------C-TT-ACGCT-AATTTT-AC-AAAAT------C-TACAGGCCCTACCAG----TTT--------ACA--ACAGCACAGCCCTGC-GTCATGCCCTAAATGT-AAAATCCAAACGT-TAA-TT-AAG--CC-GT--AGAATTTG-TCAT-TGTC-ATGCC-ACCTGAA-------CTTGTGTTGATTT-TCTGA---AT-G--------AGC-------AT-TCTTC-ATC------------------ATTCTCC-----TTCG--T---------ATCATCTTC-TTAC-GAAA-CGTATCTCC-TCTATGTGAAGCCCG-CCATTTTTTCACTTATAAAC-ACCCT----AGC---ATAACTTCG-TA-CGTCA---A-GTA--ACAGTTCAC-GGCT--------------------------TGTGCCCTTCTACAGAACTT-----------------T-------AAAC-AA-AAA-CAC-CGCAACGTCGACAGTC-AG------C-TAATTT
gi|21 : cCATCTTC-TTAC-GAAA-CGT-TTTCC-TC-ATGTGAAG-CCG-CCA-TTcaaaattcaatcaa
gi|22 : CC-TC-ATGTGAAG-CCG-CCA-TTTTTCAC---T-AAC-A--CT----AG----A
gi|3 : ACAGTATAAAAGAA-TAAA-A--AT-AAAAAAG-------CAT-CTAAACTGT--GAACAAA---TAT-GG--TTTT-AT-------TCA-----ATGT-TC-----AC-AGATACTG------------------TCA-A-T--TCGGTA---------ATTCG-TTTTTACCGG-TAA--GA-AAAA-ACAA-AGT-GCCGGT-GCA---GCG-ATAGCAAATAAAGGCC-TT-GCGCTGAATTTTGAC-AAAAT------G-TAC-----------G----TGT--------ACA--A-GGCACAGCCCTAG-G------TCTAA--GG-AAAATGCAAA--T-TAATTTTTAGTTCCCGT--T-AAATTG-T-AT-T-TC-ATGCCCACCTGAAA----CTCCTGTTTT-ATTT-T-TGA---TT-G-G------ATTAATTA--AT-TCTT--ATT------------------ATTCTCTACATTTCTG--T-TTT-TTCTATCGTCTTC-TTTT-GAAA-CGT-TTTCC-TC-ACATGAAG-CCG-CCA-TTTTTCAC---TGAAT-A--CT----AG----ATAA-GTTG-TA-CGTCACTCAGGTACGGTAATTTACTGGATA-GAAT-AA---A------GTATGG-TATGACC-TCT--AGAACTTT--------------GAT-------AAAC-AA-AAA-CTA-TGCA--GTCGACAGTT-AGAC---AC-TACGTTTCGTA
gi|4 : ttaAAAAGAA-TAAA-A--AT-AAAAAAG-------CAT-CTAAACTGT--GAACAAAAAATAT-GG--TTTT-AT--------CA-----ATGT-TC-----AC-AGATACTG------------------TCA-A-T--TCG--A---------ATTCG-TTTT-ACCGG-TAA--GA-AAAA-ACAA-AGT-GCCGGT-GCA---GCG-ATAGCAAATAAAGGCC-TTTGCGCTGAATTTTGACCAAAAT------G-TAC-----------G----TGT--------ACA--A-GGCACAGCCCTAG-G------TCTAA--GG-AAAATGCAAA--T-TAA-TTTA-G--TCCGT--A-AATTTG-T-AT-TGTC-ATGCC-ACCTGAAA----CTCCTGTTTT-ATTT-T--GA---TT-G-GGAATAAATT-------AAATCTT--ATT------------------ATTCTCTACATTTT-G--T-TTT--TCTATCGTCTTC-TTTT-GAAA-CGT-TTTCC-TC-ACATGAAG-CCG-CCA-TTTTTCAC---TGAAT-A--CT----AG----ATAG-TTTG-TA-CGTCACTCAGGTACGGTAATTTACTGGATA-GAATAAA---A------GTATGG-TATGACCTTCT---GAACTTT--------------GAT-------AAAC-AA-AAA-CTA-TGCA--GTCGACAGTT-AGAC---
gi|5 : taAA-TAAA-A--AT-AAAAAAG-------CAT-CTAAACTGT--GAACAAAAAATAT-GG--TTTT-AT--------CA-----ATGT-TC-----AC-AGATACTG------------------TCA-A-T--TCG-TA---------ATTCG-TTTT-ACCGG-TAA--GA-AAAA-ACAA-AGT-GCCGGT-GCA---GCG-ATAGCAAATAAAGGCC-TTTGCGCTGAATTTTGACCAAAAT------G-TAC-----------G----TGT--------ACA--A-GGCACAGCCCTAG-G------TCTAA--GG-AAAATGCAAA--T-TAA-TTTA-G--TCCGT--A-AATTTG-T-AT-TGTC-ATGCC-ACCTGAAA----CTCCTGTTTT-ATTT-T--GA---TT-G-GGAATAAATT-------AAATCTT--ATT------------------ATTCTCTACATTTT-G--T-TTT--TCTATCGTCTTC-TTTT-GAAA-CGT-TTTCC-TC-ACATGAAG-CCG-CCA-TTTTTCAC---TGAAT-A--CT----AG----ATAG-TTTG-TA-CGTCACTCAGGTACGGTAATTTACTGGATA-GAATAAA---A------GTATGG-TATGACCTTCT---GAACTTT--------------GAT-------AAAC-AA-AAA-CTA-TGCA--GTCGACAGTT-AGA
gi|6 : --TTTT-AT-------TCA-----ATGT-TC-----AC-AGAAGCTG------------------TCA-G-T--TCGGTA---------ATTCG-TTTT-ACCAG-TTA--GA-AATG-ACAA-AGT-GCCAGT-GCA---GCG-ATAGCAAATAAAGGCCTTT-GTGCTGAATTTTGAC--CAAT------GATA------------G----TGTACAAACTAACA--A-AGCACATCCCTGG-G------CCTAA--GGAAAAATACATA--G-TAA---TAAG--ACCGT--A-AATTTGTT-AT-TGTC-ATG-CCGCCTGAAA----CTCCTGTTTT-ATTT-T-TGA---TT-GCG------AT---------T-TCTT--ATT------------------ATTCTCTTAATTTCCGTTT-TTT-TTCTATCGTCTTC-ATTA-GAAA-CGT-TTTCCTTC-ACGTGAAG-CCC-ACA-TTTTTCCC---T-CAC-A--CT----AG----ATAA-GTCGTTA-CGT-------ACA-GGTAATTTACTGGATAGGAAT-AATGTACAT---GTACGG-TATGACCTTCT--AGAACTTT--------------G-T-------AAAC-AA-AAA-CTA-CGCA--GTCGACAGTC-AG-----AC-CAATTTTC
gi|7 : --TTTT-AT-------TCA-----ATGT-TC-----AC-AGAAGCTG------------------TCA-G-T--TCGGTA---------ATTCG-TTTT-ACCAG-TTA--GA-AAAG-ACAA-AGT-GCCAGT-GCA---GCG-ATAGCAAATAAAGGCC-TT-GTGCTGAATTTTGAC-CAAAT------G-TAT-----------G----TGTACAAACTAACA--A-AGCACATCCCTGG-G------CCTAA--GG-AAAATACATA--G-TAA--TTAAG--ACCGT--A-AATTTG-T-AT-TGTC-ATG-CCGCCTGAAA----CTCCTGTTTT-ATTT-T-TGA---TT-GCG------AT---------T-TCTT--ATT------------------ATTCTCTACATTTCCG--T-TTT-TTCTATCGTCTTC-ATTA-GAAA-CGT-TTTCC-TC-ACGTGAAG-CCA-CCA-TTTTTCCC---T-CAC-A--CT----AG----ATAA-GTCG-TA-CGTC--------A-GGTAATTTACTGGATA-GAAT-AA---AGTACATGTACGG-TATGACCTTCT--AGAACTTT--------------GAT-------AAAC-AA-AAA-CTA-CGCA--GTCGACAGTC-AGAC----C-TAATTTTCtggtattcaaattcatcaa
gi|8 : -A--AT-AAAAATG-------CGT-CAAAAGTGT--GAATGAA---T-T-GG--TTTTTAT-------TCA-----ATTCCTC-----AC-AAAAATAT------------------TCA------CCGATAGCACTATCAATTCG-TTTT-ATCGG-TAA--GA-AAAG-ATAT-AGT-TCCGGT-GCG---GCG-ATAGCAAATAAAGGCT-T-----CTGAAtggtattcaaaattcatcaa
gi|8 : G-G------CTTCT--GA-AAAATGCATA--T-CAA-TG-AAA--CCCGT--A-AATTTG-G-AT-TGTA-ATGCC-GCCTGAAA----CTGTT-TTTT-ATTTGT-TGA---TG-T-G------ATT--------T-TCTT--ATT------------------AT-CTTTCC-TTGCCA--T-TTTATTCTGTTGTCTTC-TTTG-GA---CCT-TTTC--TC-ATGTGAAG-CTG-CCA-TTTTTCAC---T-AAC-A--CT----GGTTAAATAA-GTCG-TA-TGTCA----------GTTATTTACTGGATA-G-AT-AA---A------GTAGGG-TACGGCGTTTT--AGATTTTTTTATGTTTCGTAAAGA--------AAAA-AA-AAA-CTACCGCA--ATC-ACAGTCAAGAC----T-TATTTTTCTTAaaatgcatatcaatgaaacccgtaaatttggattgtaatgccgcctgaaactgttttttatttgttgatgtgattttcttattatctttccttgccattttattctgttgtcttctttggaccttttctcatgtgaagctgccatttttcactaacactggttaaataagtcgtatgtcagttatttactggatagataaagtagggtacggcgttttagatttttttatgtttcgtaaagaaaaaaaaaactaccgcaatcacagtcaagacttatttttcttataattaaaattcacaaa
gi|9 : aataaaaatgcgtcaaaagtgtgaatgaattggtttttattcaattcctcacaaaaatattcaccgatagcactatcaattcgttttatcggtaagaaaagatatagttccggtgcggcgatagcaaataaaTATAAAAGAA-TAAA-A--TA-AAAAACG-------GAT-ATAAAGTGT--GAACAAA---T-G-GG--TTTC-AT-------TCA-----ATGT-TC-----AC-AGATGCTG------------------TCA-G-T--TCGGTA---------ATTCG-TTTT-ACCAG-TAA--GA-AAAG-ACAA-AGT-GCCGGT-GCA---GCG-ATAGCAAGTAAAGGCC-TT-GC----------------AAT------G-TAC-----------G----TGT--------ACATTA-GGCACAGCCCTAG-G------TCTAA--GG-AA-------------------AAG--CCCGT--A-AATTTG-T-AT-TGTC-ATG-CCGCCTAAAA----CTACTGTTTT-ATTT-T-TGA---TTGG-G------AT---------T-TCTT--ATT------------------taattaaaattcacaaa
gi|9 : TCTTA-TTTTAGAAA-CGT-TTTCC-TC-ACGTGAAA-CCG-CCA-TTTTTCAC---TAA-C-A--AT----AG----ATAA-GTCG-TA-CGTCA---------GGTAATTTACTGGAT-----T-------------GTACGG-TATGACCTTCT--AGAACTTT--------------GAT-------AAAC-AA-AAA-CTA-CTCT--GTCGACAGTC-AGACCTAAT-TAATTTTCGTAttagaaacgttttcctcacgtgaaaccgccatttttcactaacaatagataagtcgtacgtcaggtaatttactggattgtacggtatgaccttctagaactttgataaacaaaaactactctgtcgacagtcagacctaattaattttcgtatattcaaaattcatcaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GCTGCCTTCCCTCATAATCACTTATTGGAAGACGTACACTTAAATTTACTGGATAAAATAAGGT
Unaligned ( gi|20 ): GTAGACAGTCAGTATCTAATTAATATCGTATATATCAAAATTCATCAA
Alignments
lowQualScore : 1111111 11111 11111 11111 333333333333333333 111111 111111111 111 111 111111 333333333333333333333333333 111111 1111 1 1 11 666666666666666666666 222222222222222222 11 1 1111 66666666666 1111111111 333333333333333333333333 11111111
lowQualScore : 5 3 3 44 3 1 0000000 3 44 22222 6 33 2 9999999 22222 4 00000 4 11 555555555555555555 222222 5 444444444 3 3 3 55 3 3 3 3 44 111 3 7 7 0 3 222 222222 4 555555555555555555555555555 66 4 4 111111 55 8 1 7777 6666 0 55 55 4 4 4 4 4 0 0 8888 4 4 22 777 4 444444444444444444444 99 999999999999999999 2 4 66 5 11 4 77 4 4 3 3 3 3 3 555 1 3 44 3333 9999 3 3 3 88888888888 3 6 7777777777 0 3 55 111111111111111111111111 3 3 3 3 55 3 99999999 1
lowQualScore : . . . .. . . ....... . .. ..... . .. . ....... ..... . ..... . .. .................. ...... . ......... . . . .. . . . . .. ... . . . . . ... ...... . ........................... .. . . ...... .. . . .... .... . .. .. . . . . . . . .... . . .. ... . ..................... .. .................. . . .. . .. . .. . . . . . . . ... . . .. .... .... . . . ........... . . .......... . . .. ........................ . . . . .. . ........ .
lowQualScore : 0 6 3 66 3 6 8888888 3 66 77777 7 99 9 3333333 77777 0 00000 0 77 000000000000000000 888888 1 555555555 6 6 6 00 6 6 6 6 22 444 6 3 3 7 9 444 888888 4 888888888888888888888888888 11 4 0 555555 55 0 2 7777 1111 8 55 55 0 0 0 0 0 0 0 5555 0 0 11 000 0 000000000000000000000 55 555555555555555555 0 5 99 0 22 0 99 0 0 6 6 1 1 1 888 1 3 66 1111 6666 3 3 3 88888888888 3 7 5555555555 4 6 00 333333333333333333333333 6 6 6 6 00 6 33333333 0
consensus : NNNACCTTATAAAAGAA-TAAA-A--AT-AAAAACG-------CAT-CTAAAGTGT--GAACAAA---T-T-GG--TTTT-AT-------TCA-----ATGT-TC-----AC-AGANACTG------------------TCA-A-T--TCGGTA---------ATTCG-TTTT-ACCGG-TAA--GA-AAAG-ACAA-AGT-GCCGGT-GCA---GCG-ATAGCAAATAAAGGCC-TT-GCGCTGAATTTTGAC-AAAAT------G-TAC-----------G----TGT--------ACA--A-GGCACAGCCCTGG-G------CCTAA--GG-AAAATGCAAA--T-TAA-TTTAAG--CCCGT--A-AATTTG-T-AT-TGTC-ATGCCCGCCTGAAA----CTCCTGTTTT-ATTT-T-TGA---TT-G-G------ATT-------AT-TCTT--ATT------------------ATTCTCTACATTTCCG--T-TTT-TTCTATCGTCTTC-TTTC-GAAA-CGT-TTTCC-TC-ACGTGAAG-CCG-CCA-TTTTTCAC---TAAAC-A--CT----AG----ATAA-GTCG-TA-CGTCA-TCA-GTA-GGTAATTTACTGGATA-GAAT-AA---A------GTACGG-TATGACCTTCT--AGAACTTT--------------GAT-------AAAC-AA-AAA-CTA-CGCA--GTCGACAGTC-AGAC---AC-TAATTTTCNTA
Reference ( family-947 ) : NNNACCGTATAAAAGAA-TAAA-A--AT-AAAAACG-------CAT-CTAAAGTGT--GAACAAA---T-T-GG--TTTT-AT-------TCA-----ATGT-TC-----AC-AGANACTG------------------TCA-A-T--TCGGTA---------ATTCG-TTTT-ACCGG-TAA--GA-AAAG-ACAA-AGT-GCCGGT-GCA---GCG-ATAGCAAATAAAGGCC-TT-GCGCTGAATTTTGAC-AAAAT------G-TAC-----------G----TGT--------ACA--A-GGCACAGCCCTGG-G------CCTAA--GG-AAAATGCAAA--T-TAA-TTTAAG--CCCGT--A-AATTTG-T-AT-TGTC-ATGCCCGCCTGAAA----CTCCTGTTTT-ATTT-T-TGA---TT-G-G------ATT-------AT-TCTT--ATT------------------ATTCTCTACATTTCCG--T-TTT-TTCTATCGTCTTC-TTTC-GAAA-CGT-TTTCC-TC-ACGTGAAG-CCG-CCA-TTTTTCAC---TAAAC-A--CT----AG----ATAA-GTCG-TA-CGTCA-TCA-GTA-GGTAATTTACTGGATA-GAAT-AA---A------GTACGG-TATGACCTTCT--AGAACTTT--------------GAT-------AAAC-AA-AAA-CTA-CGCA--GTCGACAGTC-AGAC---AC-TAATTTTCNTA
gi|1 : AAGAA-TAAA-ATCAA-AAAAACG-------CATTCTAAAGTGT--GAACAAA---T-T-GGGTTTTT-AT-------T-------GCGC-TC-----AT-AGAAATTGCTTTTCCCAGGATGTTTTTCA-A-T--TCGGTA---------ATTTG-TTTA-ACCG--TAA--GA-AATG-ACAAGAGT-GCCGGC--CAAG-GCGCATAGCAAA--AAAGCT-TT-TCACAAAGTCT--AC-A---T------G-TAC-----------GCCTTTG---------ACA--A-G-CACAGCCCTGGCG------CCTAA--AGTAAAAAGCAAA--TGTAA-TTAAAG--CCCGCTAA-AATTTG-T-ATATGTCGACGCCCACCTGAAAGAAACTCGTGTTTT-ATTT-T--GAGAATT-GCG------ATTTCTTATCAT-TCTCGCATTTCCGTTTTTTTCTAGCAAATTCTCTACATTTCCG--TATGT-TTCTATCGCCTTTATTTC-GAAAACAT-TTTCC-TC-ATGTGAAG-CCGCCCA-TTTTT-AC---TAAACAA--CT----AG----ATTA-GTCG-TACCGT---TC----A-AGTAATTTAATTGATA-GATA-AA---A------GTACGT-AATG-CCTTCT--AGAACTTT--------------GATG------AAAC-AACAAACCTA-CGCA--GTCGACAGTC-A
gi|10 : CGGTA---------ATTCG-TTTT-ACCGG-TAA--GATAGAG-ACAA-AGT-GCCGG---CA---GCG-ATAGCAAATAAAGCCC-TT-ACGCTAAATTTTTAC-AAAATCTACATG-TAC-----------G----TTT--------ACA--A-AGCACAGCCCTGG-G------CCTAA--GG-TAAAAGCAAA--T-TAA--TTAAG--CCTGT--A-AATTTG-T-AT-TGTC-ATG-CCACCTGAAA----CTCGTGTTTT-AT----------------------------------T-TCTT--ATC------------------ATTCTCTACATTTC
gi|11 : TGAAG-CCG-CCA-TTTTTCAG---TAAAC-A--CTTCTTAG----ATAA-GACG-GA-CGTCA-----GTA----AATTTACTGGATA-GAAT-AA---A------GTATGGGTATGACCTTTT--AGAACTTTTATGT---------GATGTAAAGAAAAC-AA-AAA-CTA-CGCA--GTCGACAGTC---AC---ACTTAATTTTCT
gi|12 : GAA-TAAACA--GT-AAAAACG-------AAT-CTAA----------TAAA---T-T-C---TTTT-AT-------TCAC----ATGT-TC-----ACGAGATTCTGGC----------------TCACA-CC-TC--------------CTCG-ATTT--CCGG-TAA--GA-AAAG-AAGA-AGTGGTCGGTAACATGGGCG--TAGCAAATTAAGGCCGTT-GCGCgtattcaaattcatcaaa
gi|13 : T----AG----ATAA-GTCG-TA-TGTCA---A-GTA----AATT-ATTGAATA-GAAT-AA---A------TTACGG-TGTGACCTTCT--AGAACTTT--------------GAT-------AAACAAA-AAA-CTA-TGCA--GTCGACAGTC-AG-C---CT-TAATTTTC
gi|14 : agG-CTG-CCA-TTCCTCAC---TAATC-A--CTTATTGG----ATAA-GACG-TA-CATCT-TTA--------AATTTACTGGATA-AAAT-AA---G------GTaaaattcatcaa
gi|15 : CCTTATAAAAGAA-TAAA-A--AT-AAAAATGCATCGGACAT-CTGAAGTGT--GAACAAA---T-TGGG--TTTT-AT-------
gi|17 : ACTGTATAAAAAAA-TCAA-A--AT-CAAAACG-------CAT-CTAAAGTTT--GAACAAA---T-T-GG--GTTT-AT-------TCA-----AT
gi|18 : ACCTTATAAAAGAA-TAAA-A--AT-AAAAATG-------CAT-CTGAAGTGT--GAACAAA---T-TGGG--TTTT-AT-------
gi|19 : ACCTTATAAAAGAA-TAAA-A--AT-AAAAATG-------CAT-CTGAAGTGT--GAACAAA---T-T-GG--GTTT-AT-------
gi|2 : TAAAAGAAATAAA-A--ATTAAAAACG-------CAT-C-AAAGTGCTAGAACAAA---T-T-GG--TTGT-ATCAATTCCTCATAAAAATCT-TCCCACAAC-AGAATTTT------------------TCA-AATCGTCGTTC---------ATTCGCTTTT-ACTGGATAAAAGA-AAAATACAA-GGT-GCCGGC-CCA---G-G-AT-------------C-TT-ACGCT-AATTTT-AC-AAAAT------C-TACAGGCCCTACCAG----TTT--------ACA--ACAGCACAGCCCTGC-GTCATGCCCTAAATGT-AAAATCCAAACGT-TAA-TT-AAG--CC-GT--AGAATTTG-TCAT-TGTC-ATGCC-ACCTGAA-------CTTGTGTTGATTT-TCTGA---AT-G--------AGC-------AT-TCTTC-ATC------------------ATTCTCC-----TTCG--T---------ATCATCTTC-TTAC-GAAA-CGTATCTCC-TCTATGTGAAGCCCG-CCATTTTTTCACTTATAAAC-ACCCT----AGC---ATAACTTCG-TA-CGTCA---A-GTA--ACAGTTCAC-GGCT--------------------------TGTGCCCTTCTACAGAACTT-----------------T-------AAAC-AA-AAA-CAC-CGCAACGTCGACAGTC-AG------C-TAATTT
gi|21 : cCATCTTC-TTAC-GAAA-CGT-TTTCC-TC-ATGTGAAG-CCG-CCA-TTcaaaattcaatcaa
gi|22 : CC-TC-ATGTGAAG-CCG-CCA-TTTTTCAC---T-AAC-A--CT----AG----A
gi|3 : ACAGTATAAAAGAA-TAAA-A--AT-AAAAAAG-------CAT-CTAAACTGT--GAACAAA---TAT-GG--TTTT-AT-------TCA-----ATGT-TC-----AC-AGATACTG------------------TCA-A-T--TCGGTA---------ATTCG-TTTTTACCGG-TAA--GA-AAAA-ACAA-AGT-GCCGGT-GCA---GCG-ATAGCAAATAAAGGCC-TT-GCGCTGAATTTTGAC-AAAAT------G-TAC-----------G----TGT--------ACA--A-GGCACAGCCCTAG-G------TCTAA--GG-AAAATGCAAA--T-TAATTTTTAGTTCCCGT--T-AAATTG-T-AT-T-TC-ATGCCCACCTGAAA----CTCCTGTTTT-ATTT-T-TGA---TT-G-G------ATTAATTA--AT-TCTT--ATT------------------ATTCTCTACATTTCTG--T-TTT-TTCTATCGTCTTC-TTTT-GAAA-CGT-TTTCC-TC-ACATGAAG-CCG-CCA-TTTTTCAC---TGAAT-A--CT----AG----ATAA-GTTG-TA-CGTCACTCAGGTACGGTAATTTACTGGATA-GAAT-AA---A------GTATGG-TATGACC-TCT--AGAACTTT--------------GAT-------AAAC-AA-AAA-CTA-TGCA--GTCGACAGTT-AGAC---AC-TACGTTTCGTA
gi|4 : ttaAAAAGAA-TAAA-A--AT-AAAAAAG-------CAT-CTAAACTGT--GAACAAAAAATAT-GG--TTTT-AT--------CA-----ATGT-TC-----AC-AGATACTG------------------TCA-A-T--TCG--A---------ATTCG-TTTT-ACCGG-TAA--GA-AAAA-ACAA-AGT-GCCGGT-GCA---GCG-ATAGCAAATAAAGGCC-TTTGCGCTGAATTTTGACCAAAAT------G-TAC-----------G----TGT--------ACA--A-GGCACAGCCCTAG-G------TCTAA--GG-AAAATGCAAA--T-TAA-TTTA-G--TCCGT--A-AATTTG-T-AT-TGTC-ATGCC-ACCTGAAA----CTCCTGTTTT-ATTT-T--GA---TT-G-GGAATAAATT-------AAATCTT--ATT------------------ATTCTCTACATTTT-G--T-TTT--TCTATCGTCTTC-TTTT-GAAA-CGT-TTTCC-TC-ACATGAAG-CCG-CCA-TTTTTCAC---TGAAT-A--CT----AG----ATAG-TTTG-TA-CGTCACTCAGGTACGGTAATTTACTGGATA-GAATAAA---A------GTATGG-TATGACCTTCT---GAACTTT--------------GAT-------AAAC-AA-AAA-CTA-TGCA--GTCGACAGTT-AGAC---
gi|5 : taAA-TAAA-A--AT-AAAAAAG-------CAT-CTAAACTGT--GAACAAAAAATAT-GG--TTTT-AT--------CA-----ATGT-TC-----AC-AGATACTG------------------TCA-A-T--TCG-TA---------ATTCG-TTTT-ACCGG-TAA--GA-AAAA-ACAA-AGT-GCCGGT-GCA---GCG-ATAGCAAATAAAGGCC-TTTGCGCTGAATTTTGACCAAAAT------G-TAC-----------G----TGT--------ACA--A-GGCACAGCCCTAG-G------TCTAA--GG-AAAATGCAAA--T-TAA-TTTA-G--TCCGT--A-AATTTG-T-AT-TGTC-ATGCC-ACCTGAAA----CTCCTGTTTT-ATTT-T--GA---TT-G-GGAATAAATT-------AAATCTT--ATT------------------ATTCTCTACATTTT-G--T-TTT--TCTATCGTCTTC-TTTT-GAAA-CGT-TTTCC-TC-ACATGAAG-CCG-CCA-TTTTTCAC---TGAAT-A--CT----AG----ATAG-TTTG-TA-CGTCACTCAGGTACGGTAATTTACTGGATA-GAATAAA---A------GTATGG-TATGACCTTCT---GAACTTT--------------GAT-------AAAC-AA-AAA-CTA-TGCA--GTCGACAGTT-AGA
gi|6 : --TTTT-AT-------TCA-----ATGT-TC-----AC-AGAAGCTG------------------TCA-G-T--TCGGTA---------ATTCG-TTTT-ACCAG-TTA--GA-AATG-ACAA-AGT-GCCAGT-GCA---GCG-ATAGCAAATAAAGGCCTTT-GTGCTGAATTTTGAC--CAAT------GATA------------G----TGTACAAACTAACA--A-AGCACATCCCTGG-G------CCTAA--GGAAAAATACATA--G-TAA---TAAG--ACCGT--A-AATTTGTT-AT-TGTC-ATG-CCGCCTGAAA----CTCCTGTTTT-ATTT-T-TGA---TT-GCG------AT---------T-TCTT--ATT------------------ATTCTCTTAATTTCCGTTT-TTT-TTCTATCGTCTTC-ATTA-GAAA-CGT-TTTCCTTC-ACGTGAAG-CCC-ACA-TTTTTCCC---T-CAC-A--CT----AG----ATAA-GTCGTTA-CGT-------ACA-GGTAATTTACTGGATAGGAAT-AATGTACAT---GTACGG-TATGACCTTCT--AGAACTTT--------------G-T-------AAAC-AA-AAA-CTA-CGCA--GTCGACAGTC-AG-----AC-CAATTTTC
gi|7 : --TTTT-AT-------TCA-----ATGT-TC-----AC-AGAAGCTG------------------TCA-G-T--TCGGTA---------ATTCG-TTTT-ACCAG-TTA--GA-AAAG-ACAA-AGT-GCCAGT-GCA---GCG-ATAGCAAATAAAGGCC-TT-GTGCTGAATTTTGAC-CAAAT------G-TAT-----------G----TGTACAAACTAACA--A-AGCACATCCCTGG-G------CCTAA--GG-AAAATACATA--G-TAA--TTAAG--ACCGT--A-AATTTG-T-AT-TGTC-ATG-CCGCCTGAAA----CTCCTGTTTT-ATTT-T-TGA---TT-GCG------AT---------T-TCTT--ATT------------------ATTCTCTACATTTCCG--T-TTT-TTCTATCGTCTTC-ATTA-GAAA-CGT-TTTCC-TC-ACGTGAAG-CCA-CCA-TTTTTCCC---T-CAC-A--CT----AG----ATAA-GTCG-TA-CGTC--------A-GGTAATTTACTGGATA-GAAT-AA---AGTACATGTACGG-TATGACCTTCT--AGAACTTT--------------GAT-------AAAC-AA-AAA-CTA-CGCA--GTCGACAGTC-AGAC----C-TAATTTTCtggtattcaaattcatcaa
gi|8 : -A--AT-AAAAATG-------CGT-CAAAAGTGT--GAATGAA---T-T-GG--TTTTTAT-------TCA-----ATTCCTC-----AC-AAAAATAT------------------TCA------CCGATAGCACTATCAATTCG-TTTT-ATCGG-TAA--GA-AAAG-ATAT-AGT-TCCGGT-GCG---GCG-ATAGCAAATAAAGGCT-T-----CTGAAtggtattcaaaattcatcaa
gi|8 : G-G------CTTCT--GA-AAAATGCATA--T-CAA-TG-AAA--CCCGT--A-AATTTG-G-AT-TGTA-ATGCC-GCCTGAAA----CTGTT-TTTT-ATTTGT-TGA---TG-T-G------ATT--------T-TCTT--ATT------------------AT-CTTTCC-TTGCCA--T-TTTATTCTGTTGTCTTC-TTTG-GA---CCT-TTTC--TC-ATGTGAAG-CTG-CCA-TTTTTCAC---T-AAC-A--CT----GGTTAAATAA-GTCG-TA-TGTCA----------GTTATTTACTGGATA-G-AT-AA---A------GTAGGG-TACGGCGTTTT--AGATTTTTTTATGTTTCGTAAAGA--------AAAA-AA-AAA-CTACCGCA--ATC-ACAGTCAAGAC----T-TATTTTTCTTAaaatgcatatcaatgaaacccgtaaatttggattgtaatgccgcctgaaactgttttttatttgttgatgtgattttcttattatctttccttgccattttattctgttgtcttctttggaccttttctcatgtgaagctgccatttttcactaacactggttaaataagtcgtatgtcagttatttactggatagataaagtagggtacggcgttttagatttttttatgtttcgtaaagaaaaaaaaaactaccgcaatcacagtcaagacttatttttcttataattaaaattcacaaa
gi|9 : aataaaaatgcgtcaaaagtgtgaatgaattggtttttattcaattcctcacaaaaatattcaccgatagcactatcaattcgttttatcggtaagaaaagatatagttccggtgcggcgatagcaaataaaTATAAAAGAA-TAAA-A--TA-AAAAACG-------GAT-ATAAAGTGT--GAACAAA---T-G-GG--TTTC-AT-------TCA-----ATGT-TC-----AC-AGATGCTG------------------TCA-G-T--TCGGTA---------ATTCG-TTTT-ACCAG-TAA--GA-AAAG-ACAA-AGT-GCCGGT-GCA---GCG-ATAGCAAGTAAAGGCC-TT-GC----------------AAT------G-TAC-----------G----TGT--------ACATTA-GGCACAGCCCTAG-G------TCTAA--GG-AA-------------------AAG--CCCGT--A-AATTTG-T-AT-TGTC-ATG-CCGCCTAAAA----CTACTGTTTT-ATTT-T-TGA---TTGG-G------AT---------T-TCTT--ATT------------------taattaaaattcacaaa
gi|9 : TCTTA-TTTTAGAAA-CGT-TTTCC-TC-ACGTGAAA-CCG-CCA-TTTTTCAC---TAA-C-A--AT----AG----ATAA-GTCG-TA-CGTCA---------GGTAATTTACTGGAT-----T-------------GTACGG-TATGACCTTCT--AGAACTTT--------------GAT-------AAAC-AA-AAA-CTA-CTCT--GTCGACAGTC-AGACCTAAT-TAATTTTCGTAttagaaacgttttcctcacgtgaaaccgccatttttcactaacaatagataagtcgtacgtcaggtaatttactggattgtacggtatgaccttctagaactttgataaacaaaaactactctgtcgacagtcagacctaattaattttcgtatattcaaaattcatcaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GCTGCCTTCCCTCATAATCACTTATTGGAAGACGTACACTTAAATTTACTGGATAAAATAAGGT
Unaligned ( gi|20 ): GTAGACAGTCAGTATCTAATTAATATCGTATATATCAAAATTCATCAA
Alignments
lowQualScore : 1111111 11111 11111 11111 333333333333333333 111111 111111111 111 111 111111 333333333333333333333333333 111111 1111 1 1 11 666666666666666666666 222222222222222222 11 1 1111 66666666666 1111111111 333333333333333333333333 11111111
lowQualScore : 3 3 44 3 1 0000000 3 44 22222 6 33 2 9999999 22222 4 00000 4 11 555555555555555555 222222 5 444444444 3 3 3 55 3 3 3 3 44 111 3 7 7 0 3 222 222222 4 555555555555555555555555555 66 4 4 111111 55 8 1 7777 6666 0 55 55 4 4 4 4 4 0 0 8888 4 4 22 777 4 444444444444444444444 99 999999999999999999 2 4 66 5 11 4 77 4 4 3 3 3 3 3 555 1 3 44 3333 9999 3 3 3 88888888888 3 6 7777777777 0 3 55 111111111111111111111111 3 3 3 3 55 3 99999999 1
lowQualScore : . . .. . . ....... . .. ..... . .. . ....... ..... . ..... . .. .................. ...... . ......... . . . .. . . . . .. ... . . . . . ... ...... . ........................... .. . . ...... .. . . .... .... . .. .. . . . . . . . .... . . .. ... . ..................... .. .................. . . .. . .. . .. . . . . . . . ... . . .. .... .... . . . ........... . . .......... . . .. ........................ . . . . .. . ........ .
lowQualScore : 6 3 66 3 6 8888888 3 66 77777 7 99 9 3333333 77777 0 00000 0 77 000000000000000000 888888 1 555555555 6 6 6 00 6 6 6 6 22 444 6 3 3 7 9 444 888888 4 888888888888888888888888888 11 4 0 555555 55 0 2 7777 1111 8 55 55 0 0 0 0 0 0 0 5555 0 0 11 000 0 000000000000000000000 55 555555555555555555 0 5 99 0 22 0 99 0 0 6 6 1 1 1 888 1 3 66 1111 6666 3 3 3 88888888888 3 7 5555555555 4 6 00 333333333333333333333333 6 6 6 6 00 6 33333333 0
consensus : NNNACCTTATAAAAGAA-TAAA-A--AT-AAAAACG-------CAT-CTAAAGTGT--GAACAAA---T-T-GG--TTTT-AT-------TCA-----ATGT-TC-----AC-AGANACTG------------------TCA-A-T--TCGGTA---------ATTCG-TTTT-ACCGG-TAA--GA-AAAG-ACAA-AGT-GCCGGT-GCA---GCG-ATAGCAAATAAAGGCC-TT-GCGCTGAATTTTGAC-AAAAT------G-TAC-----------G----TGT--------ACA--A-GGCACAGCCCTGG-G------CCTAA--GG-AAAATGCAAA--T-TAA-TTTAAG--CCCGT--A-AATTTG-T-AT-TGTC-ATGCCCGCCTGAAA----CTCCTGTTTT-ATTT-T-TGA---TT-G-G------ATT-------AT-TCTT--ATT------------------ATTCTCTACATTTCCG--T-TTT-TTCTATCGTCTTC-TTTC-GAAA-CGT-TTTCC-TC-ACGTGAAG-CCG-CCA-TTTTTCAC---TAAAC-A--CT----AG----ATAA-GTCG-TA-CGTCA-TCA-GTA-GGTAATTTACTGGATA-GAAT-AA---A------GTACGG-TATGACCTTCT--AGAACTTT--------------GAT-------AAAC-AA-AAA-CTA-CGCA--GTCGACAGTC-AGAC---AC-TAATTTTCNTA
Reference ( family-947 ) : NNNACCTTATAAAAGAA-TAAA-A--AT-AAAAACG-------CAT-CTAAAGTGT--GAACAAA---T-T-GG--TTTT-AT-------TCA-----ATGT-TC-----AC-AGANACTG------------------TCA-A-T--TCGGTA---------ATTCG-TTTT-ACCGG-TAA--GA-AAAG-ACAA-AGT-GCCGGT-GCA---GCG-ATAGCAAATAAAGGCC-TT-GCGCTGAATTTTGAC-AAAAT------G-TAC-----------G----TGT--------ACA--A-GGCACAGCCCTGG-G------CCTAA--GG-AAAATGCAAA--T-TAA-TTTAAG--CCCGT--A-AATTTG-T-AT-TGTC-ATGCCCGCCTGAAA----CTCCTGTTTT-ATTT-T-TGA---TT-G-G------ATT-------AT-TCTT--ATT------------------ATTCTCTACATTTCCG--T-TTT-TTCTATCGTCTTC-TTTC-GAAA-CGT-TTTCC-TC-ACGTGAAG-CCG-CCA-TTTTTCAC---TAAAC-A--CT----AG----ATAA-GTCG-TA-CGTCA-TCA-GTA-GGTAATTTACTGGATA-GAAT-AA---A------GTACGG-TATGACCTTCT--AGAACTTT--------------GAT-------AAAC-AA-AAA-CTA-CGCA--GTCGACAGTC-AGAC---AC-TAATTTTCNTA
gi|1 : AAGAA-TAAA-ATCAA-AAAAACG-------CATTCTAAAGTGT--GAACAAA---T-T-GGGTTTTT-AT-------T-------GCGC-TC-----AT-AGAAATTGCTTTTCCCAGGATGTTTTTCA-A-T--TCGGTA---------ATTTG-TTTA-ACCG--TAA--GA-AATG-ACAAGAGT-GCCGGC--CAAG-GCGCATAGCAAA--AAAGCT-TT-TCACAAAGTCT--AC-A---T------G-TAC-----------GCCTTTG---------ACA--A-G-CACAGCCCTGGCG------CCTAA--AGTAAAAAGCAAA--TGTAA-TTAAAG--CCCGCTAA-AATTTG-T-ATATGTCGACGCCCACCTGAAAGAAACTCGTGTTTT-ATTT-T--GAGAATT-GCG------ATTTCTTATCAT-TCTCGCATTTCCGTTTTTTTCTAGCAAATTCTCTACATTTCCG--TATGT-TTCTATCGCCTTTATTTC-GAAAACAT-TTTCC-TC-ATGTGAAG-CCGCCCA-TTTTT-AC---TAAACAA--CT----AG----ATTA-GTCG-TACCGT---TC----A-AGTAATTTAATTGATA-GATA-AA---A------GTACGT-AATG-CCTTCT--AGAACTTT--------------GATG------AAAC-AACAAACCTA-CGCA--GTCGACAGTC-A
gi|10 : CGGTA---------ATTCG-TTTT-ACCGG-TAA--GATAGAG-ACAA-AGT-GCCGG---CA---GCG-ATAGCAAATAAAGCCC-TT-ACGCTAAATTTTTAC-AAAATCTACATG-TAC-----------G----TTT--------ACA--A-AGCACAGCCCTGG-G------CCTAA--GG-TAAAAGCAAA--T-TAA--TTAAG--CCTGT--A-AATTTG-T-AT-TGTC-ATG-CCACCTGAAA----CTCGTGTTTT-AT----------------------------------T-TCTT--ATC------------------ATTCTCTACATTTC
gi|11 : TGAAG-CCG-CCA-TTTTTCAG---TAAAC-A--CTTCTTAG----ATAA-GACG-GA-CGTCA-----GTA----AATTTACTGGATA-GAAT-AA---A------GTATGGGTATGACCTTTT--AGAACTTTTATGT---------GATGTAAAGAAAAC-AA-AAA-CTA-CGCA--GTCGACAGTC---AC---ACTTAATTTTCT
gi|12 : GAA-TAAACA--GT-AAAAACG-------AAT-CTAA----------TAAA---T-T-C---TTTT-AT-------TCAC----ATGT-TC-----ACGAGATTCTGGC----------------TCACA-CC-TC--------------CTCG-ATTT--CCGG-TAA--GA-AAAG-AAGA-AGTGGTCGGTAACATGGGCG--TAGCAAATTAAGGCCGTT-GCGCgtattcaaattcatcaaa
gi|13 : T----AG----ATAA-GTCG-TA-TGTCA---A-GTA----AATT-ATTGAATA-GAAT-AA---A------TTACGG-TGTGACCTTCT--AGAACTTT--------------GAT-------AAACAAA-AAA-CTA-TGCA--GTCGACAGTC-AG-C---CT-TAATTTTC
gi|14 : agG-CTG-CCA-TTCCTCAC---TAATC-A--CTTATTGG----ATAA-GACG-TA-CATCT-TTA--------AATTTACTGGATA-AAAT-AA---G------GTaaaattcatcaa
gi|15 : CCTTATAAAAGAA-TAAA-A--AT-AAAAATGCATCGGACAT-CTGAAGTGT--GAACAAA---T-TGGG--TTTT-AT-------
gi|17 : TATAAAAAAA-TCAA-A--AT-CAAAACG-------CAT-CTAAAGTTT--GAACAAA---T-T-GG--GTTT-AT-------TCA-----AT
gi|18 : actgACCTTATAAAAGAA-TAAA-A--AT-AAAAATG-------CAT-CTGAAGTGT--GAACAAA---T-TGGG--TTTT-AT-------
gi|19 : ACCTTATAAAAGAA-TAAA-A--AT-AAAAATG-------CAT-CTGAAGTGT--GAACAAA---T-T-GG--GTTT-AT-------
gi|2 : TAAAAGAAATAAA-A--ATTAAAAACG-------CAT-C-AAAGTGCTAGAACAAA---T-T-GG--TTGT-ATCAATTCCTCATAAAAATCT-TCCCACAAC-AGAATTTT------------------TCA-AATCGTCGTTC---------ATTCGCTTTT-ACTGGATAAAAGA-AAAATACAA-GGT-GCCGGC-CCA---G-G-AT-------------C-TT-ACGCT-AATTTT-AC-AAAAT------C-TACAGGCCCTACCAG----TTT--------ACA--ACAGCACAGCCCTGC-GTCATGCCCTAAATGT-AAAATCCAAACGT-TAA-TT-AAG--CC-GT--AGAATTTG-TCAT-TGTC-ATGCC-ACCTGAA-------CTTGTGTTGATTT-TCTGA---AT-G--------AGC-------AT-TCTTC-ATC------------------ATTCTCC-----TTCG--T---------ATCATCTTC-TTAC-GAAA-CGTATCTCC-TCTATGTGAAGCCCG-CCATTTTTTCACTTATAAAC-ACCCT----AGC---ATAACTTCG-TA-CGTCA---A-GTA--ACAGTTCAC-GGCT--------------------------TGTGCCCTTCTACAGAACTT-----------------T-------AAAC-AA-AAA-CAC-CGCAACGTCGACAGTC-AG------C-TAATTT
gi|21 : cCATCTTC-TTAC-GAAA-CGT-TTTCC-TC-ATGTGAAG-CCG-CCA-TTcaaaattcaatcaa
gi|22 : CC-TC-ATGTGAAG-CCG-CCA-TTTTTCAC---T-AAC-A--CT----AG----A
gi|3 : TATAAAAGAA-TAAA-A--AT-AAAAAAG-------CAT-CTAAACTGT--GAACAAA---TAT-GG--TTTT-AT-------TCA-----ATGT-TC-----AC-AGATACTG------------------TCA-A-T--TCGGTA---------ATTCG-TTTTTACCGG-TAA--GA-AAAA-ACAA-AGT-GCCGGT-GCA---GCG-ATAGCAAATAAAGGCC-TT-GCGCTGAATTTTGAC-AAAAT------G-TAC-----------G----TGT--------ACA--A-GGCACAGCCCTAG-G------TCTAA--GG-AAAATGCAAA--T-TAATTTTTAGTTCCCGT--T-AAATTG-T-AT-T-TC-ATGCCCACCTGAAA----CTCCTGTTTT-ATTT-T-TGA---TT-G-G------ATTAATTA--AT-TCTT--ATT------------------ATTCTCTACATTTCTG--T-TTT-TTCTATCGTCTTC-TTTT-GAAA-CGT-TTTCC-TC-ACATGAAG-CCG-CCA-TTTTTCAC---TGAAT-A--CT----AG----ATAA-GTTG-TA-CGTCACTCAGGTACGGTAATTTACTGGATA-GAAT-AA---A------GTATGG-TATGACC-TCT--AGAACTTT--------------GAT-------AAAC-AA-AAA-CTA-TGCA--GTCGACAGTT-AGAC---AC-TACGTTTCGTA
gi|4 : ttaacagAAAAGAA-TAAA-A--AT-AAAAAAG-------CAT-CTAAACTGT--GAACAAAAAATAT-GG--TTTT-AT--------CA-----ATGT-TC-----AC-AGATACTG------------------TCA-A-T--TCG--A---------ATTCG-TTTT-ACCGG-TAA--GA-AAAA-ACAA-AGT-GCCGGT-GCA---GCG-ATAGCAAATAAAGGCC-TTTGCGCTGAATTTTGACCAAAAT------G-TAC-----------G----TGT--------ACA--A-GGCACAGCCCTAG-G------TCTAA--GG-AAAATGCAAA--T-TAA-TTTA-G--TCCGT--A-AATTTG-T-AT-TGTC-ATGCC-ACCTGAAA----CTCCTGTTTT-ATTT-T--GA---TT-G-GGAATAAATT-------AAATCTT--ATT------------------ATTCTCTACATTTT-G--T-TTT--TCTATCGTCTTC-TTTT-GAAA-CGT-TTTCC-TC-ACATGAAG-CCG-CCA-TTTTTCAC---TGAAT-A--CT----AG----ATAG-TTTG-TA-CGTCACTCAGGTACGGTAATTTACTGGATA-GAATAAA---A------GTATGG-TATGACCTTCT---GAACTTT--------------GAT-------AAAC-AA-AAA-CTA-TGCA--GTCGACAGTT-AGAC---
gi|5 : taAA-TAAA-A--AT-AAAAAAG-------CAT-CTAAACTGT--GAACAAAAAATAT-GG--TTTT-AT--------CA-----ATGT-TC-----AC-AGATACTG------------------TCA-A-T--TCG-TA---------ATTCG-TTTT-ACCGG-TAA--GA-AAAA-ACAA-AGT-GCCGGT-GCA---GCG-ATAGCAAATAAAGGCC-TTTGCGCTGAATTTTGACCAAAAT------G-TAC-----------G----TGT--------ACA--A-GGCACAGCCCTAG-G------TCTAA--GG-AAAATGCAAA--T-TAA-TTTA-G--TCCGT--A-AATTTG-T-AT-TGTC-ATGCC-ACCTGAAA----CTCCTGTTTT-ATTT-T--GA---TT-G-GGAATAAATT-------AAATCTT--ATT------------------ATTCTCTACATTTT-G--T-TTT--TCTATCGTCTTC-TTTT-GAAA-CGT-TTTCC-TC-ACATGAAG-CCG-CCA-TTTTTCAC---TGAAT-A--CT----AG----ATAG-TTTG-TA-CGTCACTCAGGTACGGTAATTTACTGGATA-GAATAAA---A------GTATGG-TATGACCTTCT---GAACTTT--------------GAT-------AAAC-AA-AAA-CTA-TGCA--GTCGACAGTT-AGA
gi|6 : --TTTT-AT-------TCA-----ATGT-TC-----AC-AGAAGCTG------------------TCA-G-T--TCGGTA---------ATTCG-TTTT-ACCAG-TTA--GA-AATG-ACAA-AGT-GCCAGT-GCA---GCG-ATAGCAAATAAAGGCCTTT-GTGCTGAATTTTGAC--CAAT------GATA------------G----TGTACAAACTAACA--A-AGCACATCCCTGG-G------CCTAA--GGAAAAATACATA--G-TAA---TAAG--ACCGT--A-AATTTGTT-AT-TGTC-ATG-CCGCCTGAAA----CTCCTGTTTT-ATTT-T-TGA---TT-GCG------AT---------T-TCTT--ATT------------------ATTCTCTTAATTTCCGTTT-TTT-TTCTATCGTCTTC-ATTA-GAAA-CGT-TTTCCTTC-ACGTGAAG-CCC-ACA-TTTTTCCC---T-CAC-A--CT----AG----ATAA-GTCGTTA-CGT-------ACA-GGTAATTTACTGGATAGGAAT-AATGTACAT---GTACGG-TATGACCTTCT--AGAACTTT--------------G-T-------AAAC-AA-AAA-CTA-CGCA--GTCGACAGTC-AG-----AC-CAATTTTC
gi|7 : --TTTT-AT-------TCA-----ATGT-TC-----AC-AGAAGCTG------------------TCA-G-T--TCGGTA---------ATTCG-TTTT-ACCAG-TTA--GA-AAAG-ACAA-AGT-GCCAGT-GCA---GCG-ATAGCAAATAAAGGCC-TT-GTGCTGAATTTTGAC-CAAAT------G-TAT-----------G----TGTACAAACTAACA--A-AGCACATCCCTGG-G------CCTAA--GG-AAAATACATA--G-TAA--TTAAG--ACCGT--A-AATTTG-T-AT-TGTC-ATG-CCGCCTGAAA----CTCCTGTTTT-ATTT-T-TGA---TT-GCG------AT---------T-TCTT--ATT------------------ATTCTCTACATTTCCG--T-TTT-TTCTATCGTCTTC-ATTA-GAAA-CGT-TTTCC-TC-ACGTGAAG-CCA-CCA-TTTTTCCC---T-CAC-A--CT----AG----ATAA-GTCG-TA-CGTC--------A-GGTAATTTACTGGATA-GAAT-AA---AGTACATGTACGG-TATGACCTTCT--AGAACTTT--------------GAT-------AAAC-AA-AAA-CTA-CGCA--GTCGACAGTC-AGAC----C-TAATTTTCtggtattcaaattcatcaa
gi|8 : -A--AT-AAAAATG-------CGT-CAAAAGTGT--GAATGAA---T-T-GG--TTTTTAT-------TCA-----ATTCCTC-----AC-AAAAATAT------------------TCA------CCGATAGCACTATCAATTCG-TTTT-ATCGG-TAA--GA-AAAG-ATAT-AGT-TCCGGT-GCG---GCG-ATAGCAAATAAAGGCT-T-----CTGAAtggtattcaaaattcatcaa
gi|8 : G-G------CTTCT--GA-AAAATGCATA--T-CAA-TG-AAA--CCCGT--A-AATTTG-G-AT-TGTA-ATGCC-GCCTGAAA----CTGTT-TTTT-ATTTGT-TGA---TG-T-G------ATT--------T-TCTT--ATT------------------AT-CTTTCC-TTGCCA--T-TTTATTCTGTTGTCTTC-TTTG-GA---CCT-TTTC--TC-ATGTGAAG-CTG-CCA-TTTTTCAC---T-AAC-A--CT----GGTTAAATAA-GTCG-TA-TGTCA----------GTTATTTACTGGATA-G-AT-AA---A------GTAGGG-TACGGCGTTTT--AGATTTTTTTATGTTTCGTAAAGA--------AAAA-AA-AAA-CTACCGCA--ATC-ACAGTCAAGAC----T-TATTTTTCTTAaaatgcatatcaatgaaacccgtaaatttggattgtaatgccgcctgaaactgttttttatttgttgatgtgattttcttattatctttccttgccattttattctgttgtcttctttggaccttttctcatgtgaagctgccatttttcactaacactggttaaataagtcgtatgtcagttatttactggatagataaagtagggtacggcgttttagatttttttatgtttcgtaaagaaaaaaaaaactaccgcaatcacagtcaagacttatttttcttataattaaaattcacaaa
gi|9 : aataaaaatgcgtcaaaagtgtgaatgaattggtttttattcaattcctcacaaaaatattcaccgatagcactatcaattcgttttatcggtaagaaaagatatagttccggtgcggcgatagcaaataaaTATAAAAGAA-TAAA-A--TA-AAAAACG-------GAT-ATAAAGTGT--GAACAAA---T-G-GG--TTTC-AT-------TCA-----ATGT-TC-----AC-AGATGCTG------------------TCA-G-T--TCGGTA---------ATTCG-TTTT-ACCAG-TAA--GA-AAAG-ACAA-AGT-GCCGGT-GCA---GCG-ATAGCAAGTAAAGGCC-TT-GC----------------AAT------G-TAC-----------G----TGT--------ACATTA-GGCACAGCCCTAG-G------TCTAA--GG-AA-------------------AAG--CCCGT--A-AATTTG-T-AT-TGTC-ATG-CCGCCTAAAA----CTACTGTTTT-ATTT-T-TGA---TTGG-G------AT---------T-TCTT--ATT------------------taattaaaattcacaaa
gi|9 : TCTTA-TTTTAGAAA-CGT-TTTCC-TC-ACGTGAAA-CCG-CCA-TTTTTCAC---TAA-C-A--AT----AG----ATAA-GTCG-TA-CGTCA---------GGTAATTTACTGGAT-----T-------------GTACGG-TATGACCTTCT--AGAACTTT--------------GAT-------AAAC-AA-AAA-CTA-CTCT--GTCGACAGTC-AGACCTAAT-TAATTTTCGTAttagaaacgttttcctcacgtgaaaccgccatttttcactaacaatagataagtcgtacgtcaggtaatttactggattgtacggtatgaccttctagaactttgataaacaaaaactactctgtcgacagtcagacctaattaattttcgtatattcaaaattcatcaa
blockSeqs : A C . T C CATCGGA . TA AAATA G . T CAATTCC TAAAA C CCACA G TT GC AATCG G GCACTATCA C T A AA T T . G AA TGG . G T T CAA CTACAT A AGGCCCTACCAGTTT TT C . TCATGC AT A A CGT TTTT TT . G T C . . C C . G G CT . G GGAATAAATTAAA C . A C TT . AT . TA . A T T C . T TTA A . CC TCTT TTAA C T . ACTCAGGTACG G A TGTACAT G AC TTATGTTTCGTAAAGA A . . C AC A ACCTAAT G
blockSeqs : . . . . T . . . AAATA G . . . C . . . AT . CACC T . . . . . . . . . C . . T T G CAA . . GTGTACAAACTA . . . . . . A T TTT . . . . . . . C C . . . T . . GGAATAAATTAAA . . A T . . T . C . . . . . . . . A . . TATT C . . . ACTCAGGTACG . A AGTACAT . . TATGTGATGTAAAGA . . . . . . ACAC T
blockSeqs : . . . . C . . . TA . . . . . . . . TA . AT G . . . . . . . . . G . . . . G AA . . GTGTACAAACTA . . . . . . A T TTT . . . . . . . C C . . . T . . GATTAATTAAT . . A C . . T . C . . . . . . . . A . . . . . . . ACTCAGGTACG . . A . . GAT . . . . . . CCT G
blockSeqs : . . . . T . . . T . . . . . . . . TA . AT G . . . . . . . . . G . . . . G AA . . GTTT . . . . . . A T TT . . . . . . . C C . . . T . . AGCAT . . A C . . T . T . . . . . . . . G . . . . . . . AAGTA . . A . . GAT . . . . . . ACC
blockSeqs : . . . . T . . . T . . . . . . . . TA . AT G . . . . . . . . . G . . . . G AA . . GTGT . . . . . . A T TT . . . . . . . C C . . . T . . CGATT . . T C . . . . T . . . . . . . . G . . . . . . . AAGTA . . G . . GAT . . . . . . ACT
blockSeqs : . . . . C . . . T . . . . . . . . AG . GT A . . . . . . . . . G . . . . G CA . . GTGT . . . . . . T G TT . . . . . . . . . . . . T . . CGATT . . A . . . . . T . . . . . . . . G . . . . . . . AGTA . . A . . GAT . . . . . . AC
blockSeqs : . . . . A . . . T . . . . . . . . AG . GT G . . . . . . . . . G . . . . . C . . GTGT . . . . . . T G TG . . . . . . . . . . . . . . . GATTT . . C . . . . . A . . . . . . . . A . . . . . . . TTTA . . A . . GAT . . . . . . C
blockSeqs : . . . . A . . . T . . . . . . . . AA . GT . . . . . . . . . . G . . . . . . . . GTGT . . . . . . T T T . . . . . . . . . . . . . . . GATT . . . . A . . . . . . . . . . . . . . . . ACAG . . A . . GAT . . . . . .
blockSeqs : . . . . A . . . T . . . . . . . . TG . . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . G . . . . . . . . . . . . . . . . AG . . A . . GT . . . . . .
blockSeqs : . . . . T . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . AG . . . . . T . . . . . .
blockSeqs : . . . C . . . T . . . . . . . . . . . . . . . . A . . .
blockSeqs : . . . . . . . .
blockSeqs : . . .
blockSeqCons : ** ** ****************** G* *** CAA GTGT*********************** T*** TTT* ** **** T* *** GATT***************** ** ****************** T* GAT********************* ACC*****
originalCons : NNNACCTTATAAAAGAA-TAAA-A--AT-AAAAACG-------CAT-CTAAAGTGT--GAACAAA---T-T-GG--TTTT-AT-------TCA-----ATGT-TC-----AC-AGANACTG------------------TCA-A-T--TCGGTA---------ATTCG-TTTT-ACCGG-TAA--GA-AAAG-ACAA-AGT-GCCGGT-GCA---GCG-ATAGCAAATAAAGGCC-TT-GCGCTGAATTTTGAC-AAAAT------G-TAC-----------G----TGT--------ACA--A-GGCACAGCCCTGG-G------CCTAA--GG-AAAATGCAAA--T-TAA-TTTAAG--CCCGT--A-AATTTG-T-AT-TGTC-ATGCCCGCCTGAAA----CTCCTGTTTT-ATTT-T-TGA---TT-G-G------ATT-------AT-TCTT--ATT------------------ATTCTCTACATTTCCG--T-TTT-TTCTATCGTCTTC-TTTC-GAAA-CGT-TTTCC-TC-ACGTGAAG-CCG-CCA-TTTTTCAC---TAAAC-A--CT----AG----ATAA-GTCG-TA-CGTCA-TCA-GTA-GGTAATTTACTGGATA-GAAT-AA---A------GTACGG-TATGACCTTCT--AGAACTTT--------------GAT-------AAAC-AA-AAA-CTA-CGCA--GTCGACAGTC-AGAC---AC-TAATTTTCNTA
finalCons : NNNACCTTATAAAAGAA-TAAA-A--AT-AAAAACG-------CAT-CTAAAGTGT--GAACAAA---T-T-GG--TTTT-AT-------TCA-----ATGT-TC-----AC-AGANACTG------------------TCA-A-T--TCGGTA---------ATTCG-TTTT-ACCGG-TAA--GA-AAAG-ACAA-AGT-GCCGGTG-CA---GCG-ATAGCAAATAAAGGCC-TT-GCGCTGAATTTTGACCAAAAT------G-TACGTGT-----------------------ACA--A-GGCACAGCCCTGG-G------CCTAA--GG-AAAATGCAAAT---TAATTT-AAG--CCCGT--A-AATTTG-T-AT-TGTC-ATGCCCGCCTGAAA----CTCCTGTTTT-ATTT-TT-GA---TT-GGATT-----------------TCTT--ATT------------------ATTCTCTACATTTCCG--T-TTTT-TCTATCGTCTTC-TTTC-GAAA-CGT-TTTCC-TC-ACGTGAAG-CCG-CCA-TTTTTCAC---TAAAC-A--CT----AG----ATAA-GTCG-TA-CGTCA-TCA-GTA-GGTAATTTACTGGATA-GAAT-AA---A------GTACGG-TATGACCTTCT--AGAACTTTGAT---------------------AAAC-AA-AAA-CTA-CGCA--GTCGACAGTC-AGACC-----TAATTTTCNTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GCTGCCTTCCCTCATAATCACTTATTGGAAGACGTACACTTAAATTTACTGGATAAAATAAGGT
Unaligned ( gi|20 ): GTAGACAGTCAGTATCTAATTAATATCGTATATATCAAAATTCATCAA
Alignments
lowQualScore : 1111111 11111 11111 11111 333333333333333333 111111 111111111 111 1111111111111 333333333333333333333333333 111111 22222 1 111 444444444444444444 111 33333333333333333 11111111111 1 1111 66666666666 1111111111 333333333333333333333333 1111
lowQualScore : 3 3 44 3 1 0000000 3 44 22222 6 33 2 9999999 22222 4 00000 4 11 555555555555555555 222222 5 444444444 3 3 3 55 3 3 3 3 44 111 3 7 7 0 0 9999999999999 666666666666666666666666666 66 77 4 111111 55 8 1 1 7777 11111 55 55 4 4 4 4 4 5 5 8888 222 4 4 777 4 111111111111111111 3 1 555 4 11111111111111111 777 4 99999999999 4 4 3 3 3 3 3 555 1 3 44 3333 9999 3 3 3 88888888888 3 6 7777777777 0 3 55 111111111111111111111111 3 3 3 3 55 3 4 0000 1
lowQualScore : . . .. . . ....... . .. ..... . .. . ....... ..... . ..... . .. .................. ...... . ......... . . . .. . . . . .. ... . . . . . ............. ........................... .. .. . ...... .. . . . .... ..... .. .. . . . . . . . .... ... . . ... . .................. . . ... . ................. ... . ........... . . . . . . . ... . . .. .... .... . . . ........... . . .......... . . .. ........................ . . . . .. . . .... .
lowQualScore : 6 3 66 3 6 8888888 3 66 77777 7 99 9 3333333 77777 0 00000 0 77 000000000000000000 888888 1 555555555 6 6 6 00 6 6 6 6 22 444 6 3 3 7 1 0000000000000 444444444444444444444444444 11 11 0 555555 55 0 1 2 7777 99999 55 55 0 0 0 0 0 0 0 5555 888 0 0 000 0 333333333333333333 9 6 111 4 11111111111111111 000 8 00000000000 0 0 6 6 1 1 1 888 1 3 66 1111 6666 3 3 3 88888888888 3 7 5555555555 4 6 00 333333333333333333333333 6 6 6 6 00 6 4 6666 0
consensus : NNNACCTTATAAAAGAA-TAAA-A--AT-AAAAACG-------CAT-CTAAAGTGT--GAACAAA---T-T-GG--TTTT-AT-------TCA-----ATGT-TC-----AC-AGANACTG------------------TCA-A-T--TCGGTA---------ATTCG-TTTT-ACCGG-TAA--GA-AAAG-ACAA-AGT-GCCGGT-GCA---GCG-ATAGCAAATAAAGGCC-TT-GCGCTGAATTTTGACCAA----A-----ATGTAC-----------G----TGT--------ACA--A-GGCACAGCCCTGG-G------CCTAA--GG-AAAATGCAAA--T-TAATTTA-AG--CCCGT--A-AATTTG-T-AT-TGTC-ATGCCCGCCT----GAAACTCCTGTTTT-ATTT-T-TG---AT-TG-G------ATT-------TCTTATTATTCTCTACATTTCCG--TTTT-TTCTA-----------------TCGT---CTTCTTTNG-----------AAA-CGT-TTTCC-TC-ACGTGAAG-CCG-CCA-TTTTTCAC---TAAAC-A--CT----AG----ATAA-GTCG-TA-CGTCA-TCA-GTA-GGTAATTTACTGGATA-GAAT-AA---A------GTACGG-TATGACCTTCT--AGAACTTT--------------GAT-------AAAC-AA-AAA-CTA-CGCA--GTCGACAGTC-AGAC-CTAATT----TTCNTA
Reference ( family-947 ) : NNNACCTTATAAAAGAA-TAAA-A--AT-AAAAACG-------CAT-CTAAAGTGT--GAACAAA---T-T-GG--TTTT-AT-------TCA-----ATGT-TC-----AC-AGANACTG------------------TCA-A-T--TCGGTA---------ATTCG-TTTT-ACCGG-TAA--GA-AAAG-ACAA-AGT-GCCGGT-GCA---GCG-ATAGCAAATAAAGGCC-TT-GCGCTGAATTTTGACCAA----A-----ATGTAC-----------G----TGT--------ACA--A-GGCACAGCCCTGG-G------CCTAA--GG-AAAATGCAAA--T-TAATTTA-AG--CCCGT--A-AATTTG-T-AT-TGTC-ATGCCCGCCT----GAAACTCCTGTTTT-ATTT-T-TG---AT-TG-G------ATT-------TCTTATTATTCTCTACATTTCCG--TTTT-TTCTA-----------------TCGT---CTTCTTTCG-----------AAA-CGT-TTTCC-TC-ACGTGAAG-CCG-CCA-TTTTTCAC---TAAAC-A--CT----AG----ATAA-GTCG-TA-CGTCA-TCA-GTA-GGTAATTTACTGGATA-GAAT-AA---A------GTACGG-TATGACCTTCT--AGAACTTT--------------GAT-------AAAC-AA-AAA-CTA-CGCA--GTCGACAGTC-AGAC-CTAATT----TTCNTA
gi|1 : AAGAA-TAAA-ATCAA-AAAAACG-------CATTCTAAAGTGT--GAACAAA---T-T-GGGTTTTT-AT-------T-------GCGC-TC-----AT-AGAAATTGCTTTTCCCAGGATGTTTTTCA-A-T--TCGGTA---------ATTTG-TTTA-ACC-G-TAA--GA-AATG-ACAAGAGT-GCCGGC--CAAG-GCGCATAGCAA--AAAAGCT-TT-TCACAAAGTCT--AC-------------ATGTAC-----------GCCTTTG---------ACA--A--GCACAGCCCTGGCG------CCTAA--AGTAAAAAGCAAA--TGTAATTAA-AG--CCCGCTAA-AATTTG-T-ATATGTCGACGCCCACCTGAAAGAAACTCGTGTTTT-A-TT-T-TGAGAAT-TGCG------ATT-------TCTTATCATTCTC-GCATTTCCGT-TTTT-TTCTAGCAAATTCTCTACATTTCCGTATGTTTCTATCGCCTTTATTTCGAAAACAT-TTTCC-TC-ATGTGAAG-CCGCCCA-TTTTT-AC---TAAACAA--CT----AG----ATTA-GTCG-TACCGT---TC----A-AGTAATTTAATTGATA-GATA-AA---A------GTACGT-AATG-CCTTCT--AGAACTTT--------------GATG------AAAC-AACAAACCTA-CGCA--GTCGACAGTC-A
gi|10 : CGGTA---------ATTCG-TTTT-ACCGG-TAA--GATAGAG-ACAA-AGT-GCCGG---CA---GCG-ATAGCAAATAAAGCCC-TT-ACGCTAAATTTTTACAAA----ATCTACATGTAC-----------G----TTT--------ACA--A-AGCACAGCCCTGG-G------CCTAA--GG-TAAAAGCAAA--T-TAA-TTA-AG--CCTGT--A-AATTTG-T-AT-TGTC-ATG-CCACCT----GAAACTCGTGTTTT--------------------------ATT-------TCTTATCATTCTCTACATTTC
gi|11 : TGAAG-CCG-CCA-TTTTTCAG---TAAAC-A--CTTCTTAG----ATAA-GACG-GA-CGTCA-----GTA----AATTTACTGGATA-GAAT-AA---A------GTATGGGTATGACCTTTT--AGAACTTTTATGT---------GATGTAAAGAAAAC-AA-AAA-CTA-CGCA--GTCGACAGTC-ACAC-TTAATT----TTCT
gi|12 : GAA-TAAACA--GT-AAAAACG-------AAT-CTAA----------TAAA---T-T-C---TTTT-AT-------TCAC----ATGT-TC-----ACGAGATTCTGGC----------------TCACA-CC-TC--------------CTCG-ATTT--CCGG-TAA--GA-AAAG-AAGA-AGTGGTCGGTAACATGGGCG--TAGCAAATTAAGGCCGTT-GCGCgtattcaaattcatcaaa
gi|13 : T----AG----ATAA-GTCG-TA-TGTCA---A-GTA----AATT-ATTGAATA-GAAT-AA---A------TTACGG-TGTGACCTTCT--AGAACTTT--------------GAT-------AAACAAA-AAA-CTA-TGCA--GTCGACAGTC-AGCC-TTAATT----TTC
gi|14 : agG-CTG-CCA-TTCCTCAC---TAATC-A--CTTATTGG----ATAA-GACG-TA-CATCT-TTA--------AATTTACTGGATA-AAAT-AA---G------GTaaaattcatcaa
gi|15 : CCTTATAAAAGAA-TAAA-A--AT-AAAAATGCATCGGACAT-CTGAAGTGT--GAACAAA---T-TGGG--TTTT-AT-------
gi|17 : TATAAAAAAA-TCAA-A--AT-CAAAACG-------CAT-CTAAAGTTT--GAACAAA---T-T-GG--GTTT-AT-------TCA-----AT
gi|18 : actgACCTTATAAAAGAA-TAAA-A--AT-AAAAATG-------CAT-CTGAAGTGT--GAACAAA---T-TGGG--TTTT-AT-------
gi|19 : ACCTTATAAAAGAA-TAAA-A--AT-AAAAATG-------CAT-CTGAAGTGT--GAACAAA---T-T-GG--GTTT-AT-------
gi|2 : TAAAAGAAATAAA-A--ATTAAAAACG-------CAT-C-AAAGTGCTAGAACAAA---T-T-GG--TTGT-ATCAATTCCTCATAAAAATCT-TCCCACAAC-AGAATTTT------------------TCA-AATCGTCGTTC---------ATTCGCTTTT-ACTGGATAAAAGA-AAAATACAA-GGT-GCCGGC-CCA---G-G-AT-------------C-TT-ACGCT-AATTTTA--CAA----A-----ATCTACAGGCCCTACCAG----TTT--------ACA--ACAGCACAGCCCTGC-GTCATGCCCTAAATGT-AAAATCCAAACGT-TAATT-A-AG--CC-GT--AGAATTTG-TCAT-TGTC-ATGCC-ACCT----GAA---CTTGTGTTGATTT-TCTG---AA-TG-AGC----ATT-------CTTCATCATTCTCC-----TTCG--T--------A-----------------TCAT---CTTCTTACG-----------AAA-CGTATCTCC-TCTATGTGAAGCCCG-CCATTTTTTCACTTATAAAC-ACCCT----AGC---ATAACTTCG-TA-CGTCA---A-GTA--ACAGTTCAC-GGCT--------------------------TGTGCCCTTCTACAGAACTT-----------------T-------AAAC-AA-AAA-CAC-CGCAACGTCGACAGTC-AG---CTAATT----T
gi|21 : cCAT---CTTCTTACG-----------AAA-CGT-TTTCC-TC-ATGTGAAG-CCG-CCA-TTcaaaattcaatcaa
gi|22 : CC-TC-ATGTGAAG-CCG-CCA-TTTTTCAC---T-AAC-A--CT----AG----A
gi|3 : TATAAAAGAA-TAAA-A--AT-AAAAAAG-------CAT-CTAAACTGT--GAACAAA---TAT-GG--TTTT-AT-------TCA-----ATGT-TC-----AC-AGATACTG------------------TCA-A-T--TCGGTA---------ATTCG-TTTTTACCGG-TAA--GA-AAAA-ACAA-AGT-GCCGGT-GCA---GCG-ATAGCAAATAAAGGCC-TT-GCGCTGAATTTTGAC-AA----A-----ATGTAC-----------G----TGT--------ACA--A-GGCACAGCCCTAG-G------TCTAA--GG-AAAATGCAAA--T-TAATTTTTAGTTCCCGT--T-AAATTG-T-AT-T-TC-ATGCCCACCT----GAAACTCCTGTTTT-ATTT-T-TG---AT-TG-G------ATTAATTAATTCTTATTATTCTCTACATTTCTG--TTTT-TTCTA-----------------TCGT---CTTCTTTTG-----------AAA-CGT-TTTCC-TC-ACATGAAG-CCG-CCA-TTTTTCAC---TGAAT-A--CT----AG----ATAA-GTTG-TA-CGTCACTCAGGTACGGTAATTTACTGGATA-GAAT-AA---A------GTATGG-TATGACC-TCT--AGAACTTT--------------GAT-------AAAC-AA-AAA-CTA-TGCA--GTCGACAGTT-AGACACTACGT----TTCGTA
gi|4 : ttaacagAAAAGAA-TAAA-A--AT-AAAAAAG-------CAT-CTAAACTGT--GAACAAAAAATAT-GG--TTTT-AT--------CA-----ATGT-TC-----AC-AGATACTG------------------TCA-A-T--TCG--A---------ATTCG-TTTT-ACCGG-TAA--GA-AAAA-ACAA-AGT-GCCGGT-GCA---GCG-ATAGCAAATAAAGGCC-TTTGCGCTGAATTTTGACCAA----A-----ATGTAC-----------G----TGT--------ACA--A-GGCACAGCCCTAG-G------TCTAA--GG-AAAATGCAAA--T-TAATTT--AG--TCCGT--A-AATTTG-T-AT-TGTC-ATG-CCACCT----GAAACTCCTGTTTT-A-TT-T-TG---AT-TG-GGAATAAATTAAA----TCTTATTATTCTCTACATTT-TG---TTT-TTCTA-----------------TCGT---CTTCTTTTG-----------AAA-CGT-TTTCC-TC-ACATGAAG-CCG-CCA-TTTTTCAC---TGAAT-A--CT----AG----ATAG-TTTG-TA-CGTCACTCAGGTACGGTAATTTACTGGATA-GAATAAA---A------GTATGG-TATGACCTTCT---GAACTTT--------------GAT-------AAAC-AA-AAA-CTA-TGCA--GTCGACAGTT-AGAC-
gi|5 : taAA-TAAA-A--AT-AAAAAAG-------CAT-CTAAACTGT--GAACAAAAAATAT-GG--TTTT-AT--------CA-----ATGT-TC-----AC-AGATACTG------------------TCA-A-T--TCG-TA---------ATTCG-TTTT-ACCGG-TAA--GA-AAAA-ACAA-AGT-GCCGGT-GCA---GCG-ATAGCAAATAAAGGCC-TTTGCGCTGAATTTTGACCAA----A-----ATGTAC-----------G----TGT--------ACA--A-GGCACAGCCCTAG-G------TCTAA--GG-AAAATGCAAA--T-TAATTT--AG--TCCGT--A-AATTTG-T-AT-TGTC-ATG-CCACCT----GAAACTCCTGTTTT-A-TT-T-TG---AT-TG-GGAATAAATTAAA----TCTTATTATTCTCTACATTT-TG---TTT-TTCTA-----------------TCGT---CTTCTTTTG-----------AAA-CGT-TTTCC-TC-ACATGAAG-CCG-CCA-TTTTTCAC---TGAAT-A--CT----AG----ATAG-TTTG-TA-CGTCACTCAGGTACGGTAATTTACTGGATA-GAATAAA---A------GTATGG-TATGACCTTCT---GAACTTT--------------GAT-------AAAC-AA-AAA-CTA-TGCA--GTCGACAGTT-AGA
gi|6 : --TTTT-AT-------TCA-----ATGT-TC-----AC-AGAAGCTG------------------TCA-G-T--TCGGTA---------ATTCG-TTTT-ACCAG-TTA--GA-AATG-ACAA-AGT-GCCAGT-GCA---GCG-ATAGCAAATAAAGGCCTTT-GTGCTGAATTTTGACCAATGATA-----GTGTAC-----------AAAC-TA---------ACA--A-AGCACATCCCTGG-G------CCTAA--GGAAAAATACATA--G-TAA--TA-AG--ACCGT--A-AATTTGTT-AT-TGTC-ATG-CCGCCT----GAAACTCCTGTTTT-ATTT-T-TG---AT-TGCG------ATT-------TCTTATTATTCTCTTAATTTCCGTTTTTT-TTCTA-----------------TCGT---CTTCATTAG-----------AAA-CGT-TTTCCTTC-ACGTGAAG-CCC-ACA-TTTTTCCC---T-CAC-A--CT----AG----ATAA-GTCGTTA-CGT-------ACA-GGTAATTTACTGGATAGGAAT-AATGTACAT---GTACGG-TATGACCTTCT--AGAACTTT--------------G-T-------AAAC-AA-AAA-CTA-CGCA--GTCGACAGTC-AGAC-C-AATT----TTC
gi|7 : --TTTT-AT-------TCA-----ATGT-TC-----AC-AGAAGCTG------------------TCA-G-T--TCGGTA---------ATTCG-TTTT-ACCAG-TTA--GA-AAAG-ACAA-AGT-GCCAGT-GCA---GCG-ATAGCAAATAAAGGCC-TT-GTGCTGAATTTTGACC-A----A-----ATGTAT-----------G----TGTACAAACTAACA--A-AGCACATCCCTGG-G------CCTAA--GG-AAAATACATA--G-TAA-TTA-AG--ACCGT--A-AATTTG-T-AT-TGTC-ATG-CCGCCT----GAAACTCCTGTTTT-ATTT-T-TG---AT-TGCG------ATT-------TCTTATTATTCTCTACATTTCCG--TTTT-TTCTA-----------------TCGT---CTTCATTAG-----------AAA-CGT-TTTCC-TC-ACGTGAAG-CCA-CCA-TTTTTCCC---T-CAC-A--CT----AG----ATAA-GTCG-TA-CGTC--------A-GGTAATTTACTGGATA-GAAT-AA---AGTACATGTACGG-TATGACCTTCT--AGAACTTT--------------GAT-------AAAC-AA-AAA-CTA-CGCA--GTCGACAGTC-AGAC-CTAATT----TTCtggtattcaaattcatcaa
gi|8 : -A--AT-AAAAATG-------CGT-CAAAAGTGT--GAATGAA---T-T-GG--TTTTTAT-------TCA-----ATTCCTC-----AC-AAAAATAT------------------TCA------CCGATAGCACTATCAATTCG-TTTT-ATCGG-TAA--GA-AAAG-ATAT-AGT-TCCGGT-GCG---GCG-ATAGCAAATAAAGGCT-T-----CTGAAtggtattcaaaattcatcaa
gi|8 : G-G------CTTCT--GA-AAAATGCATA--T-CAATG-A-AA--CCCGT--A-AATTTG-G-AT-TGTA-ATGCC-GCCT----GAAACTGTT-TTTT-ATTTGT-TG---ATGTG-A------TTT-------TCTTATTAT-CTTTCC-TTGCCA--TTTTATTCTG-----------------TTGT---CTTCTTTGG-----------A---CCT-TTTC--TC-ATGTGAAG-CTG-CCA-TTTTTCAC---T-AAC-A--CT----GGTTAAATAA-GTCG-TA-TGTCA----------GTTATTTACTGGATA-G-AT-AA---A------GTAGGG-TACGGCGTTTT--AGATTTTTTTATGTTTCGTAAAGA--------AAAA-AA-AAA-CTACCGCA--ATC-ACAGTCAAGAC-TTATTT----TTCTTAaaatgcatatcaatgaaacccgtaaatttggattgtaatgccgcctgaaactgttttttatttgttgatgtgattttcttattatctttccttgccattttattctgttgtcttctttggaccttttctcatgtgaagctgccatttttcactaacactggttaaataagtcgtatgtcagttatttactggatagataaagtagggtacggcgttttagatttttttatgtttcgtaaagaaaaaaaaaactaccgcaatcacagtcaagacttatttttcttataattaaaattcacaaa
gi|9 : aataaaaatgcgtcaaaagtgtgaatgaattggtttttattcaattcctcacaaaaatattcaccgatagcactatcaattcgttttatcggtaagaaaagatatagttccggtgcggcgatagcaaataaaTATAAAAGAA-TAAA-A--TA-AAAAACG-------GAT-ATAAAGTGT--GAACAAA---T-G-GG--TTTC-AT-------TCA-----ATGT-TC-----AC-AGATGCTG------------------TCA-G-T--TCGGTA---------ATTCG-TTTT-ACCAG-TAA--GA-AAAG-ACAA-AGT-GCCGGT-GCA---GCG-ATAGCAAGTAAAGGCC-TT-GC--------------------A-----ATGTAC-----------G----TGT--------ACATTA-GGCACAGCCCTAG-G------TCTAA--GG-AAAA-------------------G--CCCGT--A-AATTTG-T-AT-TGTC-ATGCC-GCCT----AAAACTACTG-------TT-T-T-----------------ATT-------TTTGATTG------GGATTTCT-----------TA-----------------T----------TTTAG-----------AAA-CGT-TTTCC-TC-ACGTGAAA-CCG-CCA-TTTTTCAC---TAA-C-A--AT----AG----ATAA-GTCG-TA-CGTCA---------GGTAATTTACTGGAT-----T-------------GTACGG-TATGACCTTCT--AGAACTTT--------------GAT-------AAAC-AA-AAA-CTA-CTCT--GTCGACAGTC-AGAC-CTAATTAATTTTCGTAtaattaaaattcacaaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GCTGCCTTCCCTCATAATCACTTATTGGAAGACGTACACTTAAATTTACTGGATAAAATAAGGT
Unaligned ( gi|20 ): GTAGACAGTCAGTATCTAATTAATATCGTATATATCAAAATTCATCAA