lowQualScore : 2 111 1 333333333333
lowQualScore : 3 3 2 3 0 3 555 3 7777 222 6 1 1 2 999999 2 555 2 5 6666 5 2 2 2 2 999999999999 2 33 2 33 555 33 2 2
lowQualScore : . . . . . . ... . .... ... . . . . ...... . ... . . .... . . . . . ............ . .. . .. ... .. . .
lowQualScore : 7 6 4 3 0 3 888 3 1111 222 6 5 5 3 555555 9 000 9 7 1111 7 7 7 7 7 444444444444 9 99 9 99 000 99 9 9
consensus : ATTTTATAAATG-TTAGA-TTTTA-T---TC-ATTTTTA----TT--AAAANTTTTGGGCC-TT-C----AAA-A---CTGG-TGTG-CG----TAAT-AAATGG-AAGA-GCCG-AAAATCAGCCGTTGTACTAC-TAC-----T-AT--A-A--AT-AT--AG---T--GC-A-TTTGGATATTACTT
Reference ( gi|6 ) : ATCTTATAAATG-TTAGA-TTT-A-T---TC-ATTTTTA----TT--AAAATTTTTGGGCC-TT-C----AAA-A---CTGG-TGTG-CG----TAAT-AAATGG-AAGA-GCCG-AAAATCAGCCGTTGTACTAC-TAC-----T-AT--A-A--AT-AT--AG---T--GC-A-TTTGGATATTACTT
gi|3 : ATTTTATAAATG-TTAGA-TTTTA-T---TT-ATTTTTA----TT--CAAAATTTTGGGCC-TTTC----AAA-T---CTGG-TGTG-CT----TAAT-AAATGG-AAGA-GCCG-AAAATCAGCCATTGTACTAC-TA------T-AT--ATA--AT-AT--AGTGAT--GC-A-TTTGGATATTACTT
gi|2 : tATTTTATAAATG-TTAGA-TTTTA-T---TT-ATTTTTA----TTC-AAAATTT----GCC-TT-TCGTTGAA-ATATCTGT-GGTT-CG----TAATTAAATG--AAGA-GCCG-AAAATCAGTCGTTGTACTTC-TACATAAAT-AG--A-A--AT-AT--AG---T--GC-A-TTTGGATATTACT
gi|13 : tATTTTATATATGATTAGA-TTTTA-T---TT-ATCTTTT----TT--AAAAGTTTTGCGCCATT-C----AGA-A---CAGG-TGTG-CA----TAGT-AAATGG-AAGA-ACCG-AAAGCCAGCCATTGTACTAC-TA
gi|11 : tATTTTATAAATC-TTAGA-TTTTA-T---TC-ATCTTCA----TTC-AAAAATTGTGTGCCATT-C----AAA-A---GTAA-AGTT-GG----TGAT-AAATGT-CAGA-ACTG-AAAATTAGCTGTTG---------------------A-A--AT-ATACAG---T--GC-A-TTTGGAAATTAC
gi|10 : TTTTATAAATG-TTAGA-TTT-A-T---TC-ATTTTTA----TC--AA--TTTTTGGCCT-TT-C----AAA-C---CTGG-TGTG-CG----TACT-AAATGG-AAGA-GCCGAAAAATCAGCCGTTGTA-TAC-TATG----T-AA--A-A--AT-AT--AG---T--AC-A-TTTGGATATT
gi|8 : TTTTATAAATG-T-AGA-TTTTA-T---TC-ATTTTTA----TT--CAAATTTTTTGGCC-TTTC----AAA-C---CTGG-TGTG-CG----TACT-AAATGG-AAGA-GCCG-AAAATCAGC--TTGTACTAC-TATG----T-AA--A-A--AT-AT--AG---T--AC-A-TTTGGATATTcc
gi|7 : TCTTG-AAATG-TAAGA-TTT-AAT---TC-GTTTTCA----TT--AAAAATTTTGCGCCATT-T----TGA-A---CTGG-TGTG-GA----TAAT-AAACGG-AAGA-GCCA-AAAATCAGCCGTTGTACTAC-TAT-----G-AA--A-A--AT-AT--AG---T--GC-ATTTTGGATTTTcc
gi|9 : tatTTATAAATG-TTAGATTTT-A-T---TC-ATTTTTA----TT--CAAA-TTTTGGGCC-TT-T----CAA-A---CTGA-TGTG-CG----TAAT-AAATGG-AAGA--CCG-ATAATCAGCCGTTGTACTAC--A------T-GT--A-A--AT-AT--AG---T--GC-A-TTTGGATATTACTT
gi|5 : tatTTATAAATG-TTAGA-TTTTA-T---TTTATTTTTA----TT--CAAATGTT--GGCC-TTTC----AAA-A---CTGG-TGTG-CT----TAAT-AAATGG-AAGA-GCCG-AAAATCA--CATTGTACTAC-TA------T-AT--A-AATAT-AT--AG---T--GC-A-TTTGGATATTACTT
gi|12 : tatTTATAAATG-TGAGA-TTT-A-T---TC-ATATTTA----TTTAAAAAATCTTGCGCA-TT-C----AGAGA---CTAG-TGTGTCG----TA-T-AAATGA-AAGA-GCCG-AAA-CCAGCCAATTTAC-----AC-----T-ATGAA-A--AT-AT--AG---T--GC-A-TTTGGAT
gi|4 : tAAATG-TAAGA-TTT-G-TAAATT-ATTTTTA----TT--CAAAATTTTGGCCT-TT-C----AAA-A---CTGG-TGTGCCG----TAATAAAATGGAAAGAGGCCG-AAAAT-AGCCG-TGTACTAC-TAC-------ATGAA-A--AT-AT--AG---T--G--A-TTT
gi|1 : ttacta-TTT-A-T----C-ATATTTAATTTTC--AAAATTTT--GGCT-TT-C----AAA-A---CTGGATGTG-GGGCACCAAT-AAATGG-AAGA-GCCG-AAAATCAGCCTTTGTACTACTTAC-----A-ATA-A-A--AT-AT--AG---T--GCAA-TTTGGATATTACTTatgattta
gi|14 : tatattctatcaatggattgtttattAACTTTTCGCGCCGTT-C----AAG-A---CTGG-TGTG-CG----TAAT-AA-CGG-ACGA-GCCG-AAATCCAGCCGTTGTACTAC-TAT-----TAAT--A-A--ATAAC--AG---TGGGC-A-TTTTGGTAT
gi|15 : -A---CTGG-TGTA-TG----TAAT-AAATGG-AAGA-GCTG-AAAATCAGCCGTTGTACTAC-TAT-----A-AA--A-A--AT-AT--AG---T--GC-A-TTTGGATATTACTac
gi|16 : GG-AAGA-GCTG-AAAATCAGCCGTTGTACTAC-AACA----C-A---A-A--AT-AT--AG---T--GC-A-TTTGGACAATACT
Alignments
lowQualScore : 111 1 333333333333
lowQualScore : 3 44 77 77 77777 555 111 6 2 4 6666 2 2 444 2 5 5555 2 2 2 2 2 2 444444444444 2 33 2 33 444 33 2 2
lowQualScore : . .. .. .. ..... ... ... . . . .... . . ... . . .... . . . . . . ............ . .. . .. ... .. . .
lowQualScore : 1 22 44 33 77777 444 222 6 9 3 1111 9 7 777 7 3 7777 7 7 5 5 5 5 333333333333 7 77 7 77 777 77 7 7
consensus : ATTTTATAAATG-TTAGATT--T-TA--TT-----CATTTTTA---TT--CAAAATTTTGG-GCC-T----T-CAAA-A---CTGG-TGTG-CG----TAA-T-AAATGG-AAGA-GCCG-AAAATCAGCCGTTGTACTAC-TAC-----T-AT--A-A--AT-AT--AG---T--GC-A-TTTGGATATTACTT
Reference ( family-93 ) : ATTTTATAAATG-TTAGATT--T-TA--TT-----CATTTTTA---TT--AAAANTTTTGG-GCC-T----T-CAAA-A---CTGG-TGTG-CG----TAA-T-AAATGG-AAGA-GCCG-AAAATCAGCCGTTGTACTAC-TAC-----T-AT--A-A--AT-AT--AG---T--GC-A-TTTGGATATTACTT
gi|1 : ATTCTATCAATG----GATTGTT-TA--TTTTTATCATATTTAATTTT--CAAAATTTTGG--CT-T----T-CAAA-A---CTGGATGTG-GGGCACCAA-T-AAATGG-AAGA-GCCG-AAAATCAGCCTTTGTACTACTTAC-----A-ATA-A-A--AT-AT--AG---T--GCAA-TTTGGATATTACTT
gi|10 : tatTTTTATAAATG-TTAGATT--T--A--TT-----CATTTTTA---TC--AA--TTTTTGG-CCT-T----T-CAAA-C---CTGG-TGTG-CG----TAC-T-AAATGG-AAGA-GCCGAAAAATCAGCCGTTGTA-TAC-TATG----T-AA--A-A--AT-AT--AG---T--AC-A-TTTGGATATT
gi|11 : ATTTTATAAATC-TTAGATT--T-TA--TT-----CATCTTCA---TTC-AAAAATTGTGT-GCCAT----T-CAAA-A---GTAA-AGTT-GG----TGA-T-AAATGT-CAGA-ACTG-AAAATTAGCTGTTG---------------------A-A--AT-ATACAG---T--GC-A-TTTGGAAATTACcc
gi|12 : TTTATAAATG-TGAGATT--T--A--TT-----CATATTTA---TTTAAAAAATCTTGC-GCA-T----T-CAGAGA---CTAG-TGTGTCG----TA--T-AAATGA-AAGA-GCCG--AAACCAGCCAATTTAC-----AC-----T-ATGAA-A--AT-AT--AG---T--GC-A-TTTGGAT
gi|13 : ATTTTATATATGATTAGATT--T-TA--TT-----TATCTTTT---TT--AAAAGTTTTGC-GCCAT----T-CAGA-A---CAGG-TGTG-CA----TAG-T-AAATGG-AAGA-ACCG-AAAGCCAGCCATTGTACTAC-TA
gi|14 : tAACTTTTCGCGCCGT----T-CAAG-A---CTGG-TGTG-CG----TAA-T-AA-CGG-ACGA-GCCG-AAATCCAGCCGTTGTACTAC-TAT-----TAAT--A-A--ATAAC--AG---TGGGC-A-TTTTGGTAT
gi|15 : -A---CTGG-TGTA-TG----TAA-T-AAATGG-AAGA-GCTG-AAAATCAGCCGTTGTACTAC-TAT-----A-AA--A-A--AT-AT--AG---T--GC-A-TTTGGATATTACTac
gi|16 : GG-AAGA-GCTG-AAAATCAGCCGTTGTACTAC-AAC-------ACA-A-A--AT-AT--AG---T--GC-A-TTTGGACAATACT
gi|2 : ATTTTATAAATG-TTAGATT--T-TA--TT-----TATTTTTA---TT--CAAAATTT----GCC-TTTCGT-TGAA-ATATCTGT-GGTT-CG----TAATT-AAAT-G-AAGA-GCCG-AAAATCAGTCGTTGTACTTC-TACATAAAT-AG--A-A--AT-AT--AG---T--GC-A-TTTGGATATTACT
gi|3 : tATTTTATAAATG-TTAGATT--T-TA--TT-----TATTTTTA---TT--CAAAATTTTGG-GCC-T----TTCAAA-T---CTGG-TGTG-CT----TAA-T-AAATGG-AAGA-GCCG-AAAATCAGCCATTGTACTAC-TA------T-AT--ATA--AT-AT--AGTGAT--GC-A-TTTGGATATTACTT
gi|4 : tAAATG-TAAGATT--TGTAAATT------ATTTTTA---TT--CAAAATTTTGG-CCT-T----T-CAAA-A---CTGG-TGTGCCG----TAA-TAAAATGGAAAGAGGCCG-AAAAT-AGCCG-TGTACTAC-TAC-------ATGAA-A--AT-AT--AG---T--G--A-TTT
gi|5 : ttactaTTTATAAATG-TTAGATT--T-TAT-TT-----TATTTTTA---TT--CAAA-TGTTGG-CCT-T----T-CAAA-A---CTGG-TGTG-CT----TAA-T-AAATGG-AAGA-GCCG-AAAATCA--CATTGTACTAC-TA------T-AT--A-AATAT-AT--AG---T--GC-A-TTTGGATATTACTTatgattta
gi|6 : taATCTTATAAATG-TTAGATT--T--A--TT-----CATTTTTA---TT--AAAATTTTTGG-GCC-T----T-CAAA-A---CTGG-TGTG-CG----TAA-T-AAATGG-AAGA-GCCG-AAAATCAGCCGTTGTACTAC-TAC-----T-AT--A-A--AT-AT--AG---T--GC-A-TTTGGATATTACTT
gi|7 : AAATG-TAAGATT--T-AA--TT-----CGTTTTCA---TT--AAAAATTTTGC-GCCAT----T-TTGA-A---CTGG-TGTG-GA----TAA-T-AAACGG-AAGA-GCCA-AAAATCAGCCGTTGTACTAC-TAT-----G-AA--A-A--AT-AT--AG---T--GC-ATTTTGGATTTT
gi|8 : tattcttgTTTTATAAATG--TAGATT--T-TA--TT-----CATTTTTA---TT--CAAATTTTTTG-GCCTT----T-CAAA-C---CTGG-TGTG-CG----TAC-T-AAATGG-AAGA-GCCG-AAAATCAGC--TTGTACTAC-TATG----T-AA--A-A--AT-AT--AG---T--AC-A-TTTGGATATT
gi|9 : TTTATAAATG-TTAGATT--T-TA--TT-----CATTTTTA---TT--CAAA-TTTTGG-GCC-T----T-TCAA-A---CTGA-TGTG-CG----TAA-T-AAATGG-AAGA--CCG-ATAATCAGCCGTTGTACTAC--A------T-GT--A-A--AT-AT--AG---T--GC-A-TTTGGATATTACTTcc
Alignments
lowQualScore : 1 333333333333
lowQualScore : 3 44 77 77 77777 555 444 33 0 4 6666 5 2 444 2 5 5555 2 2 2 2 2 2 444444444444 2 33 2 33 444 33 2 2
lowQualScore : . .. .. .. ..... ... ... .. . . .... . . ... . . .... . . . . . . ............ . .. . .. ... .. . .
lowQualScore : 1 22 44 33 77777 444 333 99 7 3 1111 7 7 777 7 3 7777 7 7 5 5 5 5 333333333333 7 77 7 77 777 77 7 7
consensus : ATTTTATAAATG-TTAGATT--T-TA--TT-----CATTTTTA---TTC-AAAA--TTTTGGGCC-T----T-CAAA-A---CTGG-TGTG-CG----TAA-T-AAATGG-AAGA-GCCG-AAAATCAGCCGTTGTACTAC-TAC-----T-AT--A-A--AT-AT--AG---T--GC-A-TTTGGATATTACTT
Reference ( family-93 ) : ATTTTATAAATG-TTAGATT--T-TA--TT-----CATTTTTA---TTC-AAAA--TTTTGGGCC-T----T-CAAA-A---CTGG-TGTG-CG----TAA-T-AAATGG-AAGA-GCCG-AAAATCAGCCGTTGTACTAC-TAC-----T-AT--A-A--AT-AT--AG---T--GC-A-TTTGGATATTACTT
gi|1 : ATTCTATCAATG----GATTGTT-TA--TTTTTATCATATTTAATTTTC-AAAA--TTTTGG-CT-T----T-CAAA-A---CTGGATGTG-GGGCACCAA-T-AAATGG-AAGA-GCCG-AAAATCAGCCTTTGTACTACTTAC-----A-ATA-A-A--AT-AT--AG---T--GCAA-TTTGGATATTACTT
gi|10 : tatTTTTATAAATG-TTAGATT--T--A--TT-----CATTTTTA---TC----AA--TTTTTGGCC-T----TTCAAA-C---CTGG-TGTG-CG----TAC-T-AAATGG-AAGA-GCCGAAAAATCAGCCGTTGTA-TAC-TATG----T-AA--A-A--AT-AT--AG---T--AC-A-TTTGGATATT
gi|11 : ATTTTATAAATC-TTAGATT--T-TA--TT-----CATCTTCA---TTCAAAAA--TTGTGTGCCAT----T-CAAA-A---GTAA-AGTT-GG----TGA-T-AAATGT-CAGA-ACTG-AAAATTAGCTGTTG---------------------A-A--AT-ATACAG---T--GC-A-TTTGGAAATTACcc
gi|12 : TTTATAAATG-TGAGATT--T--A--TT-----CATATTTA---TTT-AAAAAATCTTGCGCA-T----T-CAGAGA---CTAG-TGTGTCG----TA--T-AAATGA-AAGA-GCCG--AAACCAGCCAATTTAC-----AC-----T-ATGAA-A--AT-AT--AG---T--GC-A-TTTGGAT
gi|13 : ATTTTATATATGATTAGATT--T-TA--TT-----TATCTTTT---TTA-AAAG--TTTTGCGCCAT----T-CAGA-A---CAGG-TGTG-CA----TAG-T-AAATGG-AAGA-ACCG-AAAGCCAGCCATTGTACTAC-TA
gi|14 : t--TTTCGCGCCGT----T-CAAG-A---CTGG-TGTG-CG----TAA-T-AA-CGG-ACGA-GCCG-AAATCCAGCCGTTGTACTAC-TAT-----TAAT--A-A--ATAAC--AG---TGGGC-A-TTTTGGTAT
gi|15 : aact-A---CTGG-TGTA-TG----TAA-T-AAATGG-AAGA-GCTG-AAAATCAGCCGTTGTACTAC-TAT-----A-AA--A-A--AT-AT--AG---T--GC-A-TTTGGATATTACTac
gi|16 : GG-AAGA-GCTG-AAAATCAGCCGTTGTACTAC-AAC-------ACA-A-A--AT-AT--AG---T--GC-A-TTTGGACAATACT
gi|2 : ATTTTATAAATG-TTAGATT--T-TA--TT-----TATTTTTA---TTC-AAAA--TTT---GCC-TTTCGT-TGAA-ATATCTGT-GGTT-CG----TAATT-AAAT-G-AAGA-GCCG-AAAATCAGTCGTTGTACTTC-TACATAAAT-AG--A-A--AT-AT--AG---T--GC-A-TTTGGATATTACT
gi|3 : tATTTTATAAATG-TTAGATT--T-TA--TT-----TATTTTTA---TTC-AAAA--TTTTGGGCC-T----TTCAAA-T---CTGG-TGTG-CT----TAA-T-AAATGG-AAGA-GCCG-AAAATCAGCCATTGTACTAC-TA------T-AT--ATA--AT-AT--AGTGAT--GC-A-TTTGGATATTACTT
gi|4 : tAAATG-TAAGATT--TGTAAATT------ATTTTTA---TTC-AAAA--TTTTGGCCT-T----T-CAAA-A---CTGG-TGTGCCG----TAA-TAAAATGGAAAGAGGCCG-AAAAT-AGCCG-TGTACTAC-TAC-------ATGAA-A--AT-AT--AG---T--G--A-TTT
gi|5 : ttactaTTTATAAATG-TTAGATT--T-TAT-TT-----TATTTTTA---TTC--AAA--TGTTGGCCT-T----T-CAAA-A---CTGG-TGTG-CT----TAA-T-AAATGG-AAGA-GCCG-AAAATCA--CATTGTACTAC-TA------T-AT--A-AATAT-AT--AG---T--GC-A-TTTGGATATTACTTatgattta
gi|6 : taATCTTATAAATG-TTAGATT--T--A--TT-----CATTTTTA---TTA-AAAT--TTTTGGGCC-T----T-CAAA-A---CTGG-TGTG-CG----TAA-T-AAATGG-AAGA-GCCG-AAAATCAGCCGTTGTACTAC-TAC-----T-AT--A-A--AT-AT--AG---T--GC-A-TTTGGATATTACTT
gi|7 : AAATG-TAAGATT--T-AA--TT-----CGTTTTCA---TTA-AAAA--TTTTGCGCCAT----T-TTGA-A---CTGG-TGTG-GA----TAA-T-AAACGG-AAGA-GCCA-AAAATCAGCCGTTGTACTAC-TAT-----G-AA--A-A--AT-AT--AG---T--GC-ATTTTGGATTTT
gi|8 : tattcttgTTTTATAAATG--TAGATT--T-TA--TT-----CATTTTTA---TTC-AAAT--TTTTTGGCCTT----T-CAAA-C---CTGG-TGTG-CG----TAC-T-AAATGG-AAGA-GCCG-AAAATCAGC--TTGTACTAC-TATG----T-AA--A-A--AT-AT--AG---T--AC-A-TTTGGATATT
gi|9 : TTTATAAATG-TTAGATT--T-TA--TT-----CATTTTTA---TTC--AAA--TTTTGGGCC-T----T-TCAA-A---CTGA-TGTG-CG----TAA-T-AAATGG-AAGA--CCG-ATAATCAGCCGTTGTACTAC--A------T-GT--A-A--AT-AT--AG---T--GC-A-TTTGGATATTACTTcc
Alignments
lowQualScore : 1 333333333333
lowQualScore : 3 44 77 77 77777 555 444 33 0 4 6666 5 2 444 2 5 5555 2 2 2 2 2 2 444444444444 2 33 2 33 444 33 2 2
lowQualScore : . .. .. .. ..... ... ... .. . . .... . . ... . . .... . . . . . . ............ . .. . .. ... .. . .
lowQualScore : 1 22 44 33 77777 444 333 99 7 3 1111 7 7 777 7 3 7777 7 7 5 5 5 5 333333333333 7 77 7 77 777 77 7 7
consensus : ATTTTATAAATG-TTAGATT--T-TA--TT-----CATTTTTA---TTC-AAAA--TTTTGGGCC-T----T-CAAA-A---CTGG-TGTG-CG----TAA-T-AAATGG-AAGA-GCCG-AAAATCAGCCGTTGTACTAC-TAC-----T-AT--A-A--AT-AT--AG---T--GC-A-TTTGGATATTACTT
Reference ( family-93 ) : ATTTTATAAATG-TTAGATT--T-TA--TT-----CATTTTTA---TTC-AAAA--TTTTGGGCC-T----T-CAAA-A---CTGG-TGTG-CG----TAA-T-AAATGG-AAGA-GCCG-AAAATCAGCCGTTGTACTAC-TAC-----T-AT--A-A--AT-AT--AG---T--GC-A-TTTGGATATTACTT
gi|1 : ATTCTATCAATG----GATTGTT-TA--TTTTTATCATATTTAATTTTC-AAAA--TTTTGG-CT-T----T-CAAA-A---CTGGATGTG-GGGCACCAA-T-AAATGG-AAGA-GCCG-AAAATCAGCCTTTGTACTACTTAC-----A-ATA-A-A--AT-AT--AG---T--GCAA-TTTGGATATTACTT
gi|10 : tatTTTTATAAATG-TTAGATT--T--A--TT-----CATTTTTA---TC----AA--TTTTTGGCC-T----TTCAAA-C---CTGG-TGTG-CG----TAC-T-AAATGG-AAGA-GCCGAAAAATCAGCCGTTGTA-TAC-TATG----T-AA--A-A--AT-AT--AG---T--AC-A-TTTGGATATT
gi|11 : ATTTTATAAATC-TTAGATT--T-TA--TT-----CATCTTCA---TTCAAAAA--TTGTGTGCCAT----T-CAAA-A---GTAA-AGTT-GG----TGA-T-AAATGT-CAGA-ACTG-AAAATTAGCTGTTG---------------------A-A--AT-ATACAG---T--GC-A-TTTGGAAATTACcc
gi|12 : TTTATAAATG-TGAGATT--T--A--TT-----CATATTTA---TTT-AAAAAATCTTGCGCA-T----T-CAGAGA---CTAG-TGTGTCG----TA--T-AAATGA-AAGA-GCCG--AAACCAGCCAATTTAC-----AC-----T-ATGAA-A--AT-AT--AG---T--GC-A-TTTGGAT
gi|13 : ATTTTATATATGATTAGATT--T-TA--TT-----TATCTTTT---TTA-AAAG--TTTTGCGCCAT----T-CAGA-A---CAGG-TGTG-CA----TAG-T-AAATGG-AAGA-ACCG-AAAGCCAGCCATTGTACTAC-TA
gi|14 : t--TTTCGCGCCGT----T-CAAG-A---CTGG-TGTG-CG----TAA-T-AA-CGG-ACGA-GCCG-AAATCCAGCCGTTGTACTAC-TAT-----TAAT--A-A--ATAAC--AG---TGGGC-A-TTTTGGTAT
gi|15 : aact-A---CTGG-TGTA-TG----TAA-T-AAATGG-AAGA-GCTG-AAAATCAGCCGTTGTACTAC-TAT-----A-AA--A-A--AT-AT--AG---T--GC-A-TTTGGATATTACTac
gi|16 : GG-AAGA-GCTG-AAAATCAGCCGTTGTACTAC-AAC-------ACA-A-A--AT-AT--AG---T--GC-A-TTTGGACAATACT
gi|2 : ATTTTATAAATG-TTAGATT--T-TA--TT-----TATTTTTA---TTC-AAAA--TTT---GCC-TTTCGT-TGAA-ATATCTGT-GGTT-CG----TAATT-AAAT-G-AAGA-GCCG-AAAATCAGTCGTTGTACTTC-TACATAAAT-AG--A-A--AT-AT--AG---T--GC-A-TTTGGATATTACT
gi|3 : tATTTTATAAATG-TTAGATT--T-TA--TT-----TATTTTTA---TTC-AAAA--TTTTGGGCC-T----TTCAAA-T---CTGG-TGTG-CT----TAA-T-AAATGG-AAGA-GCCG-AAAATCAGCCATTGTACTAC-TA------T-AT--ATA--AT-AT--AGTGAT--GC-A-TTTGGATATTACTT
gi|4 : tAAATG-TAAGATT--TGTAAATT------ATTTTTA---TTC-AAAA--TTTTGGCCT-T----T-CAAA-A---CTGG-TGTGCCG----TAA-TAAAATGGAAAGAGGCCG-AAAAT-AGCCG-TGTACTAC-TAC-------ATGAA-A--AT-AT--AG---T--G--A-TTT
gi|5 : ttactaTTTATAAATG-TTAGATT--T-TAT-TT-----TATTTTTA---TTC--AAA--TGTTGGCCT-T----T-CAAA-A---CTGG-TGTG-CT----TAA-T-AAATGG-AAGA-GCCG-AAAATCA--CATTGTACTAC-TA------T-AT--A-AATAT-AT--AG---T--GC-A-TTTGGATATTACTTatgattta
gi|6 : taATCTTATAAATG-TTAGATT--T--A--TT-----CATTTTTA---TTA-AAAT--TTTTGGGCC-T----T-CAAA-A---CTGG-TGTG-CG----TAA-T-AAATGG-AAGA-GCCG-AAAATCAGCCGTTGTACTAC-TAC-----T-AT--A-A--AT-AT--AG---T--GC-A-TTTGGATATTACTT
gi|7 : AAATG-TAAGATT--T-AA--TT-----CGTTTTCA---TTA-AAAA--TTTTGCGCCAT----T-TTGA-A---CTGG-TGTG-GA----TAA-T-AAACGG-AAGA-GCCA-AAAATCAGCCGTTGTACTAC-TAT-----G-AA--A-A--AT-AT--AG---T--GC-ATTTTGGATTTT
gi|8 : tattcttgTTTTATAAATG--TAGATT--T-TA--TT-----CATTTTTA---TTC-AAAT--TTTTTGGCCTT----T-CAAA-C---CTGG-TGTG-CG----TAC-T-AAATGG-AAGA-GCCG-AAAATCAGC--TTGTACTAC-TATG----T-AA--A-A--AT-AT--AG---T--AC-A-TTTGGATATT
gi|9 : TTTATAAATG-TTAGATT--T-TA--TT-----CATTTTTA---TTC--AAA--TTTTGGGCC-T----T-TCAA-A---CTGA-TGTG-CG----TAA-T-AAATGG-AAGA--CCG-ATAATCAGCCGTTGTACTAC--A------T-GT--A-A--AT-AT--AG---T--GC-A-TTTGGATATTACTTcc
blockSeqs : A . GT AA . . CAA AA A TTCG T G TAT . T . T A A G A . CATAAATAG T AT A AC TGA GG . T
blockSeqs : . . T T . . TA . A . T . . . C . . . . . . . CTATGA . . . . . . . .
blockSeqs : . . T . . . AA . G . . . . . . . . . . . . . TGTAA . . . . . . . .
blockSeqs : . . T . . . CA . A . . . . . . . . . . . . . TTAAT . . . . . . . .
blockSeqs : . . T . . . CA . T . . . . . . . . . . . . . CATGA . . . . . . . .
blockSeqs : . . T . . . CA . . . . . . . . . . . . . . . TGTAA . . . . . . . .
blockSeqs : . . A . . . AA . . . . . . . . . . . . . . . TAAA . . . . . . . .
blockSeqs : . . T . . . AA . . . . . . . . . . . . . . . CACA . . . . . . . .
blockSeqs : . . T . . . CA . . . . . . . . . . . . . . . CTAT . . . . . . . .
blockSeqs : . . . . . . C . . . . . . . . . . . . . . . TGAA . . . . . . . .
blockSeqs : . . . . . . C . . . . . . . . . . . . . . . TAT . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . TAT . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . TGT . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . .
blockSeqCons : ** ***** *** ****
originalCons : ATTTTATAAATG-TTAGATT--T-TA--TT-----CATTTTTA---TTC-AAAA--TTTTGGGCC-T----T-CAAA-A---CTGG-TGTG-CG----TAA-T-AAATGG-AAGA-GCCG-AAAATCAGCCGTTGTACTAC-TAC-----T-AT--A-A--AT-AT--AG---T--GC-A-TTTGGATATTACTT
finalCons : ATTTTATAAATG-TTAGATT--T-TA--TT-----CATTTTTA---TTC-AAAA--TTTTGGGCC-T----T-CAAA-A---CTGG-TGTG-CG----TAA-T-AAATGG-AAGA-GCCG-AAAATCAGCCGTTGTACTAC-TAC-----T-AT--A-A--AT-AT--AG---T--GC-A-TTTGGATATTACTT
Alignments
lowQualScore : 1 333333333333
lowQualScore : 3 44 77 77 77777 555 444 33 0 4 6666 5 2 444 2 5 5555 2 2 2 2 2 2 444444444444 2 33 2 33 444 33 2 2
lowQualScore : . .. .. .. ..... ... ... .. . . .... . . ... . . .... . . . . . . ............ . .. . .. ... .. . .
lowQualScore : 1 22 44 33 77777 444 333 99 7 3 1111 7 7 777 7 3 7777 7 7 5 5 5 5 333333333333 7 77 7 77 777 77 7 7
consensus : ATTTTATAAATG-TTAGATT--T-TA--TT-----CATTTTTA---TTC-AAAA--TTTTGGGCC-T----T-CAAA-A---CTGG-TGTG-CG----TAA-T-AAATGG-AAGA-GCCG-AAAATCAGCCGTTGTACTAC-TAC-----T-AT--A-A--AT-AT--AG---T--GC-A-TTTGGATATTACTT
Reference ( family-93 ) : ATTTTATAAATG-TTAGATT--T-TA--TT-----CATTTTTA---TTC-AAAA--TTTTGGGCC-T----T-CAAA-A---CTGG-TGTG-CG----TAA-T-AAATGG-AAGA-GCCG-AAAATCAGCCGTTGTACTAC-TAC-----T-AT--A-A--AT-AT--AG---T--GC-A-TTTGGATATTACTT
gi|1 : ATTCTATCAATG----GATTGTT-TA--TTTTTATCATATTTAATTTTC-AAAA--TTTTGG-CT-T----T-CAAA-A---CTGGATGTG-GGGCACCAA-T-AAATGG-AAGA-GCCG-AAAATCAGCCTTTGTACTACTTAC-----A-ATA-A-A--AT-AT--AG---T--GCAA-TTTGGATATTACTT
gi|10 : tatTTTTATAAATG-TTAGATT--T--A--TT-----CATTTTTA---TC----AA--TTTTTGGCC-T----TTCAAA-C---CTGG-TGTG-CG----TAC-T-AAATGG-AAGA-GCCGAAAAATCAGCCGTTGTA-TAC-TATG----T-AA--A-A--AT-AT--AG---T--AC-A-TTTGGATATT
gi|11 : ATTTTATAAATC-TTAGATT--T-TA--TT-----CATCTTCA---TTCAAAAA--TTGTGTGCCAT----T-CAAA-A---GTAA-AGTT-GG----TGA-T-AAATGT-CAGA-ACTG-AAAATTAGCTGTTG---------------------A-A--AT-ATACAG---T--GC-A-TTTGGAAATTACcc
gi|12 : TTTATAAATG-TGAGATT--T--A--TT-----CATATTTA---TTT-AAAAAATCTTGCGCA-T----T-CAGAGA---CTAG-TGTGTCG----TA--T-AAATGA-AAGA-GCCG--AAACCAGCCAATTTAC-----AC-----T-ATGAA-A--AT-AT--AG---T--GC-A-TTTGGAT
gi|13 : ATTTTATATATGATTAGATT--T-TA--TT-----TATCTTTT---TTA-AAAG--TTTTGCGCCAT----T-CAGA-A---CAGG-TGTG-CA----TAG-T-AAATGG-AAGA-ACCG-AAAGCCAGCCATTGTACTAC-TA
gi|14 : t--TTTCGCGCCGT----T-CAAG-A---CTGG-TGTG-CG----TAA-T-AA-CGG-ACGA-GCCG-AAATCCAGCCGTTGTACTAC-TAT-----TAAT--A-A--ATAAC--AG---TGGGC-A-TTTTGGTAT
gi|15 : aact-A---CTGG-TGTA-TG----TAA-T-AAATGG-AAGA-GCTG-AAAATCAGCCGTTGTACTAC-TAT-----A-AA--A-A--AT-AT--AG---T--GC-A-TTTGGATATTACTac
gi|16 : GG-AAGA-GCTG-AAAATCAGCCGTTGTACTAC-AAC-------ACA-A-A--AT-AT--AG---T--GC-A-TTTGGACAATACT
gi|2 : ATTTTATAAATG-TTAGATT--T-TA--TT-----TATTTTTA---TTC-AAAA--TTT---GCC-TTTCGT-TGAA-ATATCTGT-GGTT-CG----TAATT-AAAT-G-AAGA-GCCG-AAAATCAGTCGTTGTACTTC-TACATAAAT-AG--A-A--AT-AT--AG---T--GC-A-TTTGGATATTACT
gi|3 : tATTTTATAAATG-TTAGATT--T-TA--TT-----TATTTTTA---TTC-AAAA--TTTTGGGCC-T----TTCAAA-T---CTGG-TGTG-CT----TAA-T-AAATGG-AAGA-GCCG-AAAATCAGCCATTGTACTAC-TA------T-AT--ATA--AT-AT--AGTGAT--GC-A-TTTGGATATTACTT
gi|4 : tAAATG-TAAGATT--TGTAAATT------ATTTTTA---TTC-AAAA--TTTTGGCCT-T----T-CAAA-A---CTGG-TGTGCCG----TAA-TAAAATGGAAAGAGGCCG-AAAAT-AGCCG-TGTACTAC-TAC-------ATGAA-A--AT-AT--AG---T--G--A-TTT
gi|5 : ttactaTTTATAAATG-TTAGATT--T-TAT-TT-----TATTTTTA---TTC--AAA--TGTTGGCCT-T----T-CAAA-A---CTGG-TGTG-CT----TAA-T-AAATGG-AAGA-GCCG-AAAATCA--CATTGTACTAC-TA------T-AT--A-AATAT-AT--AG---T--GC-A-TTTGGATATTACTTatgattta
gi|6 : taATCTTATAAATG-TTAGATT--T--A--TT-----CATTTTTA---TTA-AAAT--TTTTGGGCC-T----T-CAAA-A---CTGG-TGTG-CG----TAA-T-AAATGG-AAGA-GCCG-AAAATCAGCCGTTGTACTAC-TAC-----T-AT--A-A--AT-AT--AG---T--GC-A-TTTGGATATTACTT
gi|7 : AAATG-TAAGATT--T-AA--TT-----CGTTTTCA---TTA-AAAA--TTTTGCGCCAT----T-TTGA-A---CTGG-TGTG-GA----TAA-T-AAACGG-AAGA-GCCA-AAAATCAGCCGTTGTACTAC-TAT-----G-AA--A-A--AT-AT--AG---T--GC-ATTTTGGATTTT
gi|8 : tattcttgTTTTATAAATG--TAGATT--T-TA--TT-----CATTTTTA---TTC-AAAT--TTTTTGGCCTT----T-CAAA-C---CTGG-TGTG-CG----TAC-T-AAATGG-AAGA-GCCG-AAAATCAGC--TTGTACTAC-TATG----T-AA--A-A--AT-AT--AG---T--AC-A-TTTGGATATT
gi|9 : TTTATAAATG-TTAGATT--T-TA--TT-----CATTTTTA---TTC--AAA--TTTTGGGCC-T----T-TCAA-A---CTGA-TGTG-CG----TAA-T-AAATGG-AAGA--CCG-ATAATCAGCCGTTGTACTAC--A------T-GT--A-A--AT-AT--AG---T--GC-A-TTTGGATATTACTTcc