lowQualScore : 77777777 1 11 111 111111 22222 11 111 1111111 444444444444444444444 1111 111111 3333333 333333333333333333333 222 8888888888888 1 1 1111111 11 22222222222222222222 1 22222 111 11111 11 11 111 666666 111
lowQualScore : 4 4 3 0 5 4 44444444 0 5 2 66 1 4 0 2 5 55 00 222 8 1 999999 5 00000 5 00 1 9999 222 4444444 66 111111111111111111111 3333 2 222222 8 4 5 66 4 33 1111111 5 222222222222222222222 77 111 77 5 0000000000000 1 5 5 1 5555555 44 1 1 0 4 77777777777777777777 3 6 6 6 11111 3 000 66 22222 11 888 55 000 999999 5 444 4 6666 0 4
lowQualScore : . . . . . . ........ . . . .. . . . . . .. .. ... . . ...... . ..... . .. . .... ... ....... .. ..................... .... . ...... . . . .. . .. ....... . ..................... .. ... .. . ............. . . . . ....... .. . . . . .................... . . . . ..... . ... .. ..... .. ... .. ... ...... . ... . .... . .
lowQualScore : 4 0 2 1 7 0 33333333 9 0 7 99 7 4 9 5 0 00 00 111 9 7 222222 0 00000 7 00 9 4444 666 4444444 11 111111111111111111111 9999 7 888888 9 4 0 99 5 66 0000000 7 444444444444444444444 11 444 99 3 7777777777777 4 7 7 4 9999999 11 4 8 3 3 88888888888888888888 3 7 7 7 55555 7 000 99 55555 99 888 88 777 444444 2 444 4 2222 7 4
consensus : GTACAGCGTNGTGCCATAAATGAGTCAACTTTTATT-TGTTTTA---CGCTACATAATTCATTGAAAACAACCAC-TTTT-CTAAATTAGTT-TCATTAAC-TTACCG--AANCTCAATTTATAGT------AAATTTTACATC-----ATTAACAG-A-AAAATATCTGCAGTTT----ATGGTCTC--GGTG-------TCT--TTTTCT---CC-TAAACAG-GC---ATTA----CACATATTA------TATGACTGT-AAG-AACACCAC-AC--TCAAGGTTTTCGTT-----CTCTCTTA-CAAAGGATT--ATA-----T-A--------AGGAAATGG-AACT---CTA--AAAGTTG------ATGTTAAAGTTTCATCA-GTCATATTTCTG-CA-A-TTGTTGG-CAAA-GGTTTTAAAAA-TCATGACTACAATTTATG-------CCTA------GGTGTTTC-AG-AATAAA-CGT-TTTAG----ATTNCATAAAAGTT---AGAGCAAAATTGAGT--TC-----AG--AATG---CTTGTTCAAACAAAGGAT-GTTTTT----ATCAATGAANTATATAGCGNAAA-ACG--TAAAAG-TTGACTCATTT
Reference ( gi|1 ) : GTACAGTATGGTGCCATAAATGAGTCAACTTTTATT-TGTTTTAAATTACTATATAATTAATTGAAAACAACCAC-CTCT-CTAAATTAGTT-TCATTAAC-TTACCA--AACCTCAATTTATAGT------AAATTTTACATC-----ATTAACAG-A-CAAATATCTGCAGTTT----ATGGTCTT--GGTG-------TCT--TTTTCT---CCATAAACAG-GT---ATTA----CACATATTA------TATGACTGT-AAG-AACACCAC-AC--TCAAAGTTTTCGTTT----CTCTCTTA-CAAAGGATT--ATA-----T-A--------AGGAAATGG-AACT---CTA--AAAGTTG------C------AGTTTCATCA-GTCATATTTCTG-CA-A-TTGTTGG-CAAA-GGTTTTAAAAA-TCATGACTACAATTTATG-------CCTA------GATGTTTC-AG-AATAAA-CGT-TTTAG----ATTTCATAAAAGTT---AGAGCAAAATTGAGT--TC-----AG--AATG---CTTGTTCAAGTAAAGGAT-GTTTTTCTGAATCAATGAAATATATAGTGTAAA-ATG--TGAAAG-TTGACTCATTT
gi|9 : GTACAGTGTCGTGCTATAAATGAGTC------TATT-T---TTA---CGCTACACGTTTCATTGAAAATA-CCAC-TTTT-CTCAATT--TTCTCGGTCACATTATTT--GAGGTCAA------GC------ATATTCTAAACC-----ACTAACAA-AACAAATATCTACAATTTCTCCATGATATC--AGCGAGTATTTTCT--TTTT-T---C--TGAACA--------TCA----CGCATATCG------TATGACTGT-ACC-AATACCAC-AC--TCTCGGTTTTCATT
gi|15 : acGTACAGT-TCGTGCTATAAATGAGTC-----TTATTATATT-----CCGCTACAC-GTTCATTGAAAAT-ACCAC-TTTTCCTCAATTct
gi|2 : acTACAGTATGGTGCCATAAATGAGTCAACCTTTACT-TGTTTTA-----CTATATAATTCATTGAAAACAGCCAC-TTCT-CTAAGTTAGTT-TCATTAAC-TTACCA--AACCTTAATCTATAGT------AAATTGTACATC-----ATCAACAG-A-AAAATATCTCCAGTTT----ATGGTCTT--GGTG-------TAT--TTTTCT---CCATAAACAG-CC---ATTA----TACATATAA------TATGACTGT-AAG-AACACCAT-AC--TCAAAGTGTTCGTTT----CTCTTTTA-CAAAGGATT--ATA-----T-A--------AGGAAATGG-AACT---CTA--AAAGTTGATGTTAA------AGTTTCATCA-GTCACATTTCTG-CA-A-TTGTTGG-CAAA-AGTTTTAAA----C---------ATTTATG-------CCTA------GGTGTTTC-AG-AATAAC-CGT-TTTAC----ATTTCATAATAGTT---AGAGCAAAATTGAGT--TC-----AG--AATG---CTTGTTCAAACAAATGAT-G---TTGTG---CAATGAAATATATAGCGTAAA-ATG--TGAAAG-TTGACtc
gi|3 : cTACAGCATAGTGCCATAAAGGAGTCAACTTTCA---CATTTTA---CGCTATATGTTTCATTGAAAAAAATCCT-TTGT-TTGAACAAG----CATT-------CTG--AA-CTCAATTT
gi|10 : attaacagaaaaattcctgcagtttatggtcttggtgtctttttctccataaacagccattatatacacatattacatgtatatgactgtaagaacactacactcaaagttttcgttaactctcttacaaaggatttaaggaaatggaactctaaaagttgatgttaaaatttcatcaatcatatttctgcacattgttggcaaaggtttaaaaataatggttacaatttatgccaagatccttcagaataaacgttttagatttcataaaagttagagcaTACAGCGTAGTGCCATAAATGAGTCAACTTTCAga
gi|14 : tacaatttatgtctaggtgtttcagaataaccgttttagatttcataaaagcaaaattgagttcagaatgcttgttcaatcaaaggatgtttttcaatgaaaatgTGCAGCGTAGTGCCATAAATGAGTCAATTTTTATT-TATT-----TTACTACATAATTCATTGATAACAGCCACTTTTT-CTAAACCATTT-CCATga
gi|11 : ACAGTATGGTGCCATATATGAGTCAACTTTTATT-TGTTTTA-----CTATATAATTCATTGAAAACAACCAC-CTCT-CTAGGTTAGTT-TCATTAAC-TTACCATTAACCTCAGTTTATAGT------AAg
gi|13 : ATGAGTCAACTTTTATT-TGTTTTA-----CTATATAATTCATTGAAAACAACCAC-CTCA-CTAAATTAGTT-TCATTAAC-TTACCA--AAACTCAATTTATAGT------AAATTTTACAT
gi|7 : gAATTCAATGAAAACAACCAC-TTTT-CTAAAGTGTTT-TTATCAAA-TTACTT--AATCTCAAATCCTAATGATTTAAAGTTTTA-ATCC----GGTATCCA-A-CAAACAGCCGCAGTCA----CTGGT------ACG-------TCC--T-------------AATGG-GTTGTATTGT---CA-ATATTG------CACGACTGG-AAA-AACACCAC-GC--GCGATATTTTGATTTTGAACACTCTTA-TGAAGGATTGAATG-----T-ATTACCTATAGCAAATTG---CTAGGCTA--AAGTTTT------G------AGTCTTACTT-GTCATATTTTTA-TA-A-CAAATGG-TCGA-AACATTAAAAACTCATGTCCA-GATCTATG-------Ct
gi|8 : TTGAAAACTTTCAC-TTTT-CTTAAGAATTT-TCAT--A--TTGTTT--AATGTCAATTTAGCAT------AACTTTTACACTGTTAAATTAACAGCA-CAATTATCTGCAGTTT----CTGGTCTC--AGTG-------CCT--TTTTTTTTTCC-TGAA----GT---GCTA----TATATATTA------TTTGATTGT-AAGTAACACCCT-AC--TCAAGGTTTTTGTTC----CACTCTTT-CAAAGGATT--ATAATCATT-AC-------AGTTGATG---------CTA--AGA-------------------TTTCAGTA-GTCATATTTCTG-CA-A-TTGTTGG-TCGA-ACTTTTGAAAA-TCAT
gi|5 : C-----ATTAACAG-A-AAAATATCTGC-GTTT----ATGGTCTTTTGGTG-------TCT--TTTTCT---CC-TAAACATTGC---ATTA----CACATATTA------TATGATTTTTAAG-AACACCAC-AC--TCAGA------------------CTTA-CAATGGATT--ATA-----T-A--------AGGAAATGG-AACTT--CTA--AAAATTG------ATGTTAAAGTTTCATCAAGTCATATTTCTG-CA-AATTGTTGGGCAAAAGGTTTTAAAA--TCATGACTACAATTTATG-------C-TA------GG-GTTTCCAG-AATAAA-CGT-TTTAG-----TTGGATAAAAGTT---AGAGCAAAATTGAGT--TC-----AG--AATG---ccagatgagtgattttgtagcaaatgcttcag
gi|4 : acaagagtaaccagagttatcgcgcttgcactgggattcaaaccattcatcaaagatatggtgataatgcC-----ATTAACAG-A-AAAATATCTGC-GTTT----ATGGTCTTTTGGTG-------TCT--TTTTCT---CC-TAAACATTGC---ATTA----CACATATTA------TATGATTTTTAAG-AACACCAC-AC--TCAGA------------------CTTA-CAATGGATT--ATA-----T-A--------AGGAAATGG-AACTT--CTA--AAAATTG------ATGTTAAAGTTTCATCAAGTCATATTTCTG-CA-AATTGTTGGGCAAAAGGTTTTAAAA--TCATGACTACAATTTATG-------C-TA------GG-GTTTCCAG-AATAAA-CGT-TTTAG-----TTGGATAAAAGTT---AGAGCAAAATTGAGT--TC-----AG--AATG---
gi|3 : acaagagtaaccagagttatcgcgcttgcactgggattcaaaccattcatcaaagatatggtgataatgc-----ATTAACAG-A-AAAATTCCTGCAGTTT----ATGGTCTT--GGTG-------TCT--TTTTCT---CCATAAACAG-CC---ATTATATACACATATTACATGTATATGACTGT-AAG-AACACTAC-AC--TCAAAGTTTTCGTTAA---CTCTCTTA-CAAAGGATT----------T-A--------AGGAAATGG-AACT---CTA--AAAGTTG------ATGTTAAAATTTCATCA-ATCATATTTCTG-CACA-TTGTTGG-CAAA-GGTTT-AAAAA-TAATGGTTACAATTTATG-------CCAA------GATCCTTC-AG-AATAAA-CGT-TTTAG----ATTTCATAAAAGTT---AGAGCAAAATTGAGT--TC-----AG--AATG---CTTGTTCAAACAAAGGAT--TTTTT-----TCAATGAAACATATAGCGTAAA-ATG--TGAAAG-TTGACTCCTTT
gi|6 : AATGTTTGCAATT-----ATAGTCTC--GGTG-------TCTAATTT-----------------GT---TTT-------CATAT------------------AAC-AACACCACCACCGTCAAGGTTTTTGTT-----CTCTCTCAATAAAGGATT--CAA-----TCA--------AGGAAATAGTAATA---CTAGGAATGTTA------A------AATTTCATCA-GT-ATATTTCTGTCA-A-TTGTT---C------TTTTAAAAA-TACTTACAAAAATATATGTAAGGAATCTATTCTCCCATATTTC-TGAAACAAAGCGTGTTTAATAATATTCCATAAAAATTATAAGAGC-AAATTGAGTCGTC-----AGA-AATG---ATTGTCCAAAAAATGGATAGTTTT----AA--AACGAAATATTTAGCGCAGACACG--TAAAAGCTTGGCTCATTTatggcactatgctgtaga
gi|16 : TCAGCAGTTT----ATGGTCTC--GATG-------TCT--TTTTTC---CCCT--ACAG-TC---ATAA----CACATATCA------TATAACTGC-AAA-AAat
gi|10 : TACAATTTATG-------TCTA------GGTGTTTC-AG-AATAAC-CGT-TTTAG----ATTTCATAAA---------AGCAAAATTGAGT--TC-----AG--AATG---CTTGTTCAATCAAAGGAT-GTTTT------TCAATG-------------AAA-ATG--TGAAAG-TTGACTCATTT
gi|12 : TTACATGATAATC---AGAGCAAAATATTCT--TC-----AA--AGT----TTTATTCCA-CAAAAGAT-GCTTTCC---AT---TGAAATATA-----TAAA-ACA--TAATAG-TTGACTAGTTTatggcactacgctgtaga
gi|13 : AAATTGAGT--TTTGGTAAGTTAATGAAACTAATTTA-GTGAGG--T-GGTTGTTT---TCAATGAATTATATAGTAAAAC-AAA--TAAAAG-TTGACTCATacaacactacgctgcatat
gi|14 : gATCAATGAATTATGTAGT--AAA-ATAAATAAAAA-TTGACTCATTTatagtaaattttacatt
gi|2 : atggaaatggtttagaaaaagtggctgttTCAATGAATTATATAGTAAAAC-AAG--TAAAGG-TTGACTCATTTatggcactacgctgcag
gi|11 : ctacagtatggtgccatTCAATGAATTATATAGTAAAAC-AAA--TAAAAG-TTGACTCATaaacagccacttctctaagttagtttcattaacttaccaaaccttaatctatagtaaattgtacatcatcaacagaaaaatatctccagtttatggtcttggtgtatttttctccataaacagccattatacatataatatgactgtaagaacaccatactcaaagtgttcgtttctcttttacaaaggattatataaggaaatggaactctaaaagttgatgttaaagtttcatcagtcacatttctgcaattgttggcaaaagttttaaacatttatgcctaggtgtttcagaataaccgttttacatttcataatagttagagcaaaattgagttcagaatgcttgttcaaacaaatgatgttgtgcaatgaaatatatagcgtaaaatgtgaaagttgac
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): GGATTCAAACATTTATCAAGATATGGTGATAAATGCTATTAATCAAGAATA
Alignments
lowQualScore : 333333 111 111111 11111 11 1111111111 1 2222 1111 111111 222222222 11111111 1 1111 1 1 1 1 11 333333333333333 1 11111 4444444
lowQualScore : 55 1 3 0 5 0 222222 3 2 4 4 2 0 66 777 1 0 666666 2 5 22222 5 4 0 8888 11 9999999999 4 2 4 2 1111 2222 111111 8 4 44 1 555555555 5 777 2 5 88888888 1 55 0 0000 0 0 0 0 5 5 0 0 3 0 11 0 111111111111111 4 5 1 5 5 5 77777 1 888 66 5 1 6666666 3 66666 6 0 1 6
lowQualScore : .. . . . . . ...... . . . . . . .. ... . . ...... . . ..... . . . .... .. .......... . . . . .... .... ...... . . .. . ......... . ... . . ........ . .. . .... . . . . . . . . . . .. . ............... . . . . . . ..... . ... .. . . ....... . ..... . . . .
lowQualScore : 44 0 2 2 1 2 888888 6 7 4 4 5 1 44 777 0 1 444444 5 0 55555 0 4 8 5555 00 5555555555 0 0 0 5 0000 5555 555555 0 0 66 9 999999999 0 000 0 0 11111111 4 11 0 6666 2 1 1 0 0 0 0 0 1 0 22 3 222222222222222 3 0 4 7 7 7 11111 0 888 99 0 0 5555555 3 55555 7 7 0 7
consensus : GTACAGTGTGGTGCCATAAATGAGTCAACTTTTATTTGTTTTA---C-CTATATAATTCATTGAAAACAACCAC-TTCT-CTAAATTANTTTCATTAAC-TTACCN--AACCTCAATTTATAGT------AAATTTTACAT-C-----ATTAACAGAA-AAAT-ATCTGCAGTTT----ATGGTCTC--GGTG-----TC---TTT-TTCTCC-TA-AACAG--GCATTA----CACATATTA------TATGACTGT-AAG-AACACCACACTCAAAGTTTTCGTT--CT-----CTCTT-ACAAAGGATT--ATAT-A--------AGGAAATGG-AACT-CTA----AAAGTTGATGTTAAAGTTTCATCA-GTCATATTTCTG-CA-A-TTGTTGG-CAAA-GGTTTTAAAAA-TCATGACTACAATTTATG---------------CCTAGGTGTTTC-AG-AATAAA-CGT-TTTAG----ATTNCATAAAAGTT---AGAGCAAAATTGAGT--TCAG-AATGCTTGTTCAAACAAAGGATGTTTTT-----TCAATGAAATATATAGCGTAAA-ACGTGAAAG-TTGACTCATTT
Reference ( family-85 ) : GTACAGCGTNGTGCCATAAATGAGTCAACTTTTATTTGTTTTA---CGCTACATAATTCATTGAAAACAACCAC-TTTT-CTAAATTAGTTTCATTAAC-TTACCG--AANCTCAATTTATAGT------AAATTTTACAT-C-----ATTAACAGAA-AAAT-ATCTGCAGTTT----ATGGTCTC--GGTG-----TC---TTT-TTCTCC-TA-AACAG--GCATTA----CACATATTA------TATGACTGT-AAG-AACACCACACTCAAGGTTTTCGTT--CT-----CTCTT-ACAAAGGATT--ATAT-A--------AGGAAATGG-AACT-CTA----AAAGTTGATGTTAAAGTTTCATCA-GTCATATTTCTG-CA-A-TTGTTGG-CAAA-GGTTTTAAAAA-TCATGACTACAATTTATG---------------CCTAGGTGTTTC-AG-AATAAA-CGT-TTTAG----ATTNCATAAAAGTT---AGAGCAAAATTGAGT--TCAG-AATGCTTGTTCAAACAAAGGATGTTTTT----ATCAATGAANTATATAGCGNAAA-ACGTAAAAG-TTGACTCATTT
gi|1 : GTACAGTATGGTGCCATAAATGAGTCAACTTTTATTTGTTTTAAATTACTATATAATTAATTGAAAACAACCAC-CTCT-CTAAATTAGTTTCATTAAC-TTACCA--AACCTCAATTTATAGT------AAATTTTACAT-C-----ATTAACAGAC-AAAT-ATCTGCAGTTT----ATGGTCTT--GGTG-----TC---TTT-TTCTCCATA-AACAG--GTATTA----CACATATTA------TATGACTGT-AAG-AACACCACACTCAAAGTTTTCGTTT-CT-----CTCTT-ACAAAGGATT--ATAT-A--------AGGAAATGG-AACT-CTA----AAAGTTGC------AGTTTCATCA-GTCATATTTCTG-CA-A-TTGTTGG-CAAA-GGTTTTAAAAA-TCATGACTACAATTTATG---------------CCTAGATGTTTC-AG-AATAAA-CGT-TTTAG----ATTTCATAAAAGTT---AGAGCAAAATTGAGT--TCAG-AATGCTTGTTCAAGTAAAGGATGTTTTTCTGAATCAATGAAATATATAGTGTAAA-ATGTGAAAG-TTGACTCATTT
gi|10 : TACAATTTATG---------------TCTAGGTGTTTC-AG-AATAAC-CGT-TTTAG----ATTTCATAAA---------AGCAAAATTGAGT--TCAG-AATGCTTGTTCAATCAAAGGATGTTTT------TCAATG-------------AAA-ATGTGAAAG-TTGACTCATTT
gi|11 : ACAGTATGGTGCCATATATGAGTCAACTTTTATTTGTTTTA---C--TATATAATTCATTGAAAACAACCAC-CTCT-CTAGGTTAGTTTCATTAAC-TTACCATTAACCTCAGTTTATAGT------AAatggcactacgctgtaga
gi|12 : TTACATGATAATC---AGAGCAAAATATTCT--TCAA-AGT-TTTATTC-CACAAAAGATGCTTT------CCATTGAAATATAT-----AAA-ACATAATAG-TTGACTAGTTT
gi|12 : TGCAGCGTAGTGTTGTAAACTAGTCAACTATTA--TGTTTTA------TATAT--TTCAATGGAAAacaacactacgctgcatat
gi|13 : ttacatgataatcagagcaaaatattcttcaaagttttattccacaaaagatgcATGAGTCAACTTTTATTTGTTTTA---C--TATATAATTCATTGAAAACAACCAC-CTCA-CTAAATTAGTTTCATTAAC-TTACCA--AAACTCAATTTATAGT------AAATTTTACAT-tat
gi|14 : gTGCAGCGTAGTGCCATAAATGAGTCAATTTTTATTTATTTTA-----CTACATAATTCATTGATAACAGCCACTTTTT-CTAAACCATTTCCATt
gi|15 : GTACAGT-TCGTGCTATAAATGAGTC-----TTA-TTATATTC---CGCTACAC-GTTCATTGAAAAT-ACCAC-TTTTCCTCAATTg
gi|16 : acTCAGCAGTTT----ATGGTCTC--GATG-----TCT--TTT-TTCCCC-T---ACAG--TCATAA----CACATATCA------TATAACTGC-AAA-AAtc
gi|2 : TACAGTATGGTGCCATAAATGAGTCAACCTTTACTTGTTTTA---C--TATATAATTCATTGAAAACAGCCAC-TTCT-CTAAGTTAGTTTCATTAAC-TTACCA--AACCTTAATCTATAGT------AAATTGTACAT-C-----ATCAACAGAA-AAAT-ATCTCCAGTTT----ATGGTCTT--GGTG-----TA---TTT-TTCTCCATA-AACAG--CCATTA----TACATATAA------TATGACTGT-AAG-AACACCATACTCAAAGTGTTCGTTT-CT-----CTTTT-ACAAAGGATT--ATAT-A--------AGGAAATGG-AACT-CTA----AAAGTTGATGTTAAAGTTTCATCA-GTCACATTTCTG-CA-A-TTGTTGG-CAAA-AGTTTTAAA------------CA-TTTATG---------------CCTAGGTGTTTC-AG-AATAAC-CGT-TTTAC----ATTTCATAATAGTT---AGAGCAAAATTGAGT--TCAG-AATGCTTGTTCAAACAAATGATGTTGT------GCAATGAAATATATAGCGTAAA-ATGTGAAAG-TTGAC
gi|3 : c-----ATTAACAGAA-AAAT-TCCTGCAGTTT----ATGGTCTT--GGTG-----TC---TTT-TTCTCCATA-AACAG--CCATTATATACACATATTACATGTATATGACTGT-AAG-AACACTACACTCAAAGTTTTCGTTAACT-----CTCTT-ACAAAGGATT-----T-A--------AGGAAATGG-AACT-CTA----AAAGTTGATGTTAAAATTTCATCA-ATCATATTTCTG-CACA-TTGTTGG-CAAA-GG-TTTAAAAA-TAATGGTTACAATTTATG---------------CCAAGATCCTTC-AG-AATAAA-CGT-TTTAG----ATTTCATAAAAGTT---AGAGCAAAATTGAGT--TCAG-AATGCTTGTTCAAACAAAGGAT-TTTTT-----TCAATGAAACATATAGCGTAAA-ATGTGAAAG-TTGACTCCTTT
gi|4 : -C-----ATTAACAGAA-AAAT-ATCTGC-GTTT----ATGGTCTTTTGGTG-----TC---TTT-TTCTCC-TA-AACATT-GCATTA----CACATATTA------TATGATTTTTAAG-AACACCACACTCAGA--------------------CTT-ACAATGGATT--ATAT-A--------AGGAAATGG-AACTTCTA----AAAATTGATGTTAAAGTTTCATCAAGTCATATTTCTG-CA-AATTGTTGGGCAAAAGGTTTTAAAA--TCATGACTACAATTTATG---------------C-TAGG-GTTTCCAG-AATAAA-CGT-TTTAG-----TTGGATAAAAGTT---AGAGCAAAATTGAGT--TCAG-AATGatggcactatgctgtaga
gi|5 : acaagagtaaccagagttatcgcgcttgcactgggattcaaaccattcatcaaagatatggtgataatgc-C-----ATTAACAGAA-AAAT-ATCTGC-GTTT----ATGGTCTTTTGGTG-----TC---TTT-TTCTCC-TA-AACATT-GCATTA----CACATATTA------TATGATTTTTAAG-AACACCACACTCAGA--------------------CTT-ACAATGGATT--ATAT-A--------AGGAAATGG-AACTTCTA----AAAATTGATGTTAAAGTTTCATCAAGTCATATTTCTG-CA-AATTGTTGGGCAAAAGGTTTTAAAA--TCATGACTACAATTTATG---------------C-TAGG-GTTTCCAG-AATAAA-CGT-TTTAG-----TTGGATAAAAGTT---AGAGCAAAATTGAGT--TCAG-AATG
gi|6 : acaagagtaaccagagttatcgcgcttgcactgggattcaaaccattcatcaaagatatggtgataatgcAAT-GTTTGCAATT-----ATAGTCTC--GGTG-----TCTAATTTGTTTTCA-TATAACA--------A----CAC----------------------------CACCACCGTCAAGGTTTTTGTT--CT-----CTCTCAATAAAGGATT--CAATCA--------AGGAAATAGTAATA-CTA----GGA----ATGTTAAAATTTCATCA-GT-ATATTTCTGTCA-A-TTGTT---C------TTTTAAAAA-TACTTACAAAAATATATGTAAGGAATCTATTCTCCCA--TATTTC-TGAAACAAAGCGTGTTTAATAATATTCCATAAAAATTATAAGAGC-AAATTGAGTCGTCAGAAATGATTGTCCAAAAAATGGATAGTTTT----A-AAACGAAATATTTAGCGCAGACACGTAAAAGCTTGGCTCATTT
gi|7 : AATTCAATGAAAACAACCAC-TTTT-CTAAAGTGTTTTTATCAAA-TTACTT--AATCTCAAATCCTAATGATTTAAAGTTTTA-ATCC-----GGTATCCAAC-AAAC-AGCCGCAGTCA----CTGGTA-C--G--------------------TCC-TA-ATGGGTTGTATTGT---CA-ATATTG------CACGACTGG-AAA-AACACCACGCGCGATATTTTGATT--TTGAACACTCTT-ATGAAGGATTGAATGT-ATTACCTATAGCAAATTG------CTAGGCTAAAGTT----TT-GAGTCTTACTT-GTCATATTTTTA-TA-A-CAAATGG-TCGA-AACATTAAAAACTCATGTCCA-GATCTATG---------------Cat
gi|8 : TTGAAAACTTTCAC-TTTT-CTTAAGAATTTTCAT--A--TTGTTT--AATGTCAATTTAGCAT------AACTTTTACAC-TGTTAAATTAACAGCA-CAATTATCTGCAGTTT----CTGGTCTC--AGTG-----CCTTTTTT-TTTTCC-TG-AA-----GTGCTA----TATATATTA------TTTGATTGT-AAGTAACACCCTACTCAAGGTTTTTGTT--CCA----CTCTT-TCAAAGGATT--AT----------------AAT---CATT--------ACAGTTGATGCTAAGATTTCAGTA-GTCATATTTCTG-CA-A-TTGTTGG-TCGA-ACTTTTGAAAA-TCAT
gi|9 : GTACAGTGTCGTGCTATAAATGAGTC------TATTT---TTA---CGCTACACGTTTCATTGAAAATA-CCAC-TTTT-CTCAATT-TTCTCGGTCACATTATTT--GAGGTCA------AGC------ATATTCTAAAC-C-----ACTAACAAAACAAAT-ATCTACAATTTCTCCATGATATC--AGCGAGTATTT---TCT-TTTTTC-TG-AA------CATCA----CGCATATCG------TATGACTGT-ACC-AATACCACACTCTCGGTTTTCATT--CT-----ccagatgagtgattttgtagcaaatgcttcag
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GGATTCAAACATTTATCAAGATATGGTGATAAATGCTATTAATCAAGAATA
Alignments
lowQualScore : 333333 111111 11111 11 1111111111 1 2222 1111 111111 222222222 11111111 1 1111 1 1 1 1 11 333333333333333 1 11111 11 222222
lowQualScore : 4 1 3 0 5 0 999999 3 2 4 2 1 0 66 888 1 1 666666 2 5 22222 5 4 0 8888 11 9999999999 4 2 4 3333 2222 111111 8 4 2 1 555555555 5 777 2 5 88888888 1 55 0 0000 0 0 0 0 5 5 0 0 3 0 11 0 111111111111111 4 5 1 5 5 5 77777 1 888 66 5 6 44 444444 33 1 6 0 6
lowQualScore : . . . . . . ...... . . . . . . .. ... . . ...... . . ..... . . . .... .. .......... . . . .... .... ...... . . . . ......... . ... . . ........ . .. . .... . . . . . . . . . . .. . ............... . . . . . . ..... . ... .. . . .. ...... .. . . . .
lowQualScore : 0 7 2 2 0 2 444444 6 7 4 0 0 1 44 999 7 7 444444 5 0 55555 0 4 8 5555 00 5555555555 0 0 0 5555 5555 555555 0 0 9 9 999999999 0 000 0 0 11111111 4 11 0 6666 2 1 1 0 0 0 0 0 1 0 22 3 222222222222222 3 0 4 7 7 7 11111 0 888 99 0 0 88 222222 55 5 7 7 7
consensus : GTACAGTGTGGTGCCATAAATGAGTCAACTTTTATT-TGTTTTAC----CTATATAATTCATTGAAAACAACCAC-TTCTCTAAATTANTTTCATTAAC-TTACC--NAACCTCAATTTATAGT------AAATTTTACAT-C-----ATTAACAGAA-AAAT-ATCTGCAGTTT----ATGGTCTC--GGTG-----TC---TTT-TTCTCC-TA-AACAG--GCATTA----CACATATTA------TATGACTGT-AAG-AACACCACACTCAAAGTTTTCGTT--CT-----CTCTT-ACAAAGGATT--ATAT-A--------AGGAAATGG-AACT-CTA----AAAGTTGATGTTAAAGTTTCATCA-GTCATATTTCTG-CA-A-TTGTTGG-CAAA-GGTTTTAAAAA-TCATGACTACAATTTATG---------------CCTAGGTGTTTC-AG-AATAAA-CGT-TTTAG----ATTNCATAAAAGTT---AGAGCAAAATTGAGT--TCAG-AATGCTTGTTCAAACAAAGGATGTTTTT-----TCAATGAAATATATAGCGTAAA-ACGTGAAAG-TTGACTCATTT
Reference ( family-85 ) : GTACAGTGTGGTGCCATAAATGAGTCAACTTTTATT-TGTTTTAC----CTATATAATTCATTGAAAACAACCAC-TTCTCTAAATTANTTTCATTAAC-TTACC--NAACCTCAATTTATAGT------AAATTTTACAT-C-----ATTAACAGAA-AAAT-ATCTGCAGTTT----ATGGTCTC--GGTG-----TC---TTT-TTCTCC-TA-AACAG--GCATTA----CACATATTA------TATGACTGT-AAG-AACACCACACTCAAAGTTTTCGTT--CT-----CTCTT-ACAAAGGATT--ATAT-A--------AGGAAATGG-AACT-CTA----AAAGTTGATGTTAAAGTTTCATCA-GTCATATTTCTG-CA-A-TTGTTGG-CAAA-GGTTTTAAAAA-TCATGACTACAATTTATG---------------CCTAGGTGTTTC-AG-AATAAA-CGT-TTTAG----ATTNCATAAAAGTT---AGAGCAAAATTGAGT--TCAG-AATGCTTGTTCAAACAAAGGATGTTTTT-----TCAATGAAATATATAGCGTAAA-ACGTGAAAG-TTGACTCATTT
gi|1 : GTACAGTATGGTGCCATAAATGAGTCAACTTTTATT-TGTTTTAAATTACTATATAATTAATTGAAAACAACCAC-CTCTCTAAATTAGTTTCATTAAC-TTACC--AAACCTCAATTTATAGT------AAATTTTACAT-C-----ATTAACAGAC-AAAT-ATCTGCAGTTT----ATGGTCTT--GGTG-----TC---TTT-TTCTCCATA-AACAG--GTATTA----CACATATTA------TATGACTGT-AAG-AACACCACACTCAAAGTTTTCGTTT-CT-----CTCTT-ACAAAGGATT--ATAT-A--------AGGAAATGG-AACT-CTA----AAAGTTGC------AGTTTCATCA-GTCATATTTCTG-CA-A-TTGTTGG-CAAA-GGTTTTAAAAA-TCATGACTACAATTTATG---------------CCTAGATGTTTC-AG-AATAAA-CGT-TTTAG----ATTTCATAAAAGTT---AGAGCAAAATTGAGT--TCAG-AATGCTTGTTCAAGTAAAGGATGTTTTTCTGAATCAATGAAATATATAGTGTAAA-ATGTGAAAG-TTGACTCATTT
gi|10 : TACAATTTATG---------------TCTAGGTGTTTC-AG-AATAAC-CGT-TTTAG----ATTTCATAAA---------AGCAAAATTGAGT--TCAG-AATGCTTGTTCAATCAAAGGATG-TTTT-----TCAATG-------------AAA-ATGTGAAAG-TTGACTCATTT
gi|11 : ACAGTATGGTGCCATATATGAGTCAACTTTTATT-TGTTTTAC-----TATATAATTCATTGAAAACAACCAC-CTCTCTAGGTTAGTTTCATTAAC-TTACCATTAACCTCAGTTTATAGT------AAatggcactacgctgtaga
gi|12 : TTACATGATAATC---AGAGCAAAATATTCT--TCAA-AGT-TTTATTCCA-CAAAAGATGCTTTC------CATTGAAATATATA-----AA-ACATAATAG-TTGACTAGTTT
gi|12 : TGCAGCGTAGTGTTGTAAACTAGTCAACTATTA---TGTTTTA------TATAT--TTCAATGGAAAacaacactacgctgcatat
gi|13 : ttacatgataatcagagcaaaatattcttcaaagttttattccacaaaagatgcATGAGTCAACTTTTATT-TGTTTTAC-----TATATAATTCATTGAAAACAACCAC-CTCACTAAATTAGTTTCATTAAC-TTACC--AAAACTCAATTTATAGT------AAATTTTACAT-tat
gi|14 : gTGCAGCGTAGTGCCATAAATGAGTCAATTTTTATT-TATTTTA-----CTACATAATTCATTGATAACAGCCACTTTTTCTAAACCATTTCCATt
gi|15 : GTACAGT-TCGTGCTATAAATGAGTC-----TTATTATATTCCG-----CTACAC-GTTCATTGAAAAT-ACCAC-TTTTCC---TCAATTTCg
gi|16 : acTCAGCAGTTT----ATGGTCTC--GATG-----TCT--TTT-TTCCCC-T---ACAG--TCATAA----CACATATCA------TATAACTGC-AAA-AA
gi|2 : TACAGTATGGTGCCATAAATGAGTCAACCTTTACT-TGTTTTAC-----TATATAATTCATTGAAAACAGCCAC-TTCTCTAAGTTAGTTTCATTAAC-TTACC--AAACCTTAATCTATAGT------AAATTGTACAT-C-----ATCAACAGAA-AAAT-ATCTCCAGTTT----ATGGTCTT--GGTG-----TA---TTT-TTCTCCATA-AACAG--CCATTA----TACATATAA------TATGACTGT-AAG-AACACCATACTCAAAGTGTTCGTTT-CT-----CTTTT-ACAAAGGATT--ATAT-A--------AGGAAATGG-AACT-CTA----AAAGTTGATGTTAAAGTTTCATCA-GTCACATTTCTG-CA-A-TTGTTGG-CAAA-AGTTTTAAA------------CA-TTTATG---------------CCTAGGTGTTTC-AG-AATAAC-CGT-TTTAC----ATTTCATAATAGTT---AGAGCAAAATTGAGT--TCAG-AATGCTTGTTCAAACAAATGATG-TTGT-----GCAATGAAATATATAGCGTAAA-ATGTGAAAG-TTGAC
gi|3 : c-----ATTAACAGAA-AAAT-TCCTGCAGTTT----ATGGTCTT--GGTG-----TC---TTT-TTCTCCATA-AACAG--CCATTATATACACATATTACATGTATATGACTGT-AAG-AACACTACACTCAAAGTTTTCGTTAACT-----CTCTT-ACAAAGGATT-----T-A--------AGGAAATGG-AACT-CTA----AAAGTTGATGTTAAAATTTCATCA-ATCATATTTCTG-CACA-TTGTTGG-CAAA-GG-TTTAAAAA-TAATGGTTACAATTTATG---------------CCAAGATCCTTC-AG-AATAAA-CGT-TTTAG----ATTTCATAAAAGTT---AGAGCAAAATTGAGT--TCAG-AATGCTTGTTCAAACAAAGGAT-TTTTT-----TCAATGAAACATATAGCGTAAA-ATGTGAAAG-TTGACTCCTTT
gi|4 : -C-----ATTAACAGAA-AAAT-ATCTGC-GTTT----ATGGTCTTTTGGTG-----TC---TTT-TTCTCC-TA-AACATT-GCATTA----CACATATTA------TATGATTTTTAAG-AACACCACACTCAGA--------------------CTT-ACAATGGATT--ATAT-A--------AGGAAATGG-AACTTCTA----AAAATTGATGTTAAAGTTTCATCAAGTCATATTTCTG-CA-AATTGTTGGGCAAAAGGTTTTAAAA--TCATGACTACAATTTATG---------------C-TAGG-GTTTCCAG-AATAAA-CGT-TTTAG-----TTGGATAAAAGTT---AGAGCAAAATTGAGT--TCAG-AATGatggcactatgctgtaga
gi|5 : acaagagtaaccagagttatcgcgcttgcactgggattcaaaccattcatcaaagatatggtgataatgc-C-----ATTAACAGAA-AAAT-ATCTGC-GTTT----ATGGTCTTTTGGTG-----TC---TTT-TTCTCC-TA-AACATT-GCATTA----CACATATTA------TATGATTTTTAAG-AACACCACACTCAGA--------------------CTT-ACAATGGATT--ATAT-A--------AGGAAATGG-AACTTCTA----AAAATTGATGTTAAAGTTTCATCAAGTCATATTTCTG-CA-AATTGTTGGGCAAAAGGTTTTAAAA--TCATGACTACAATTTATG---------------C-TAGG-GTTTCCAG-AATAAA-CGT-TTTAG-----TTGGATAAAAGTT---AGAGCAAAATTGAGT--TCAG-AATG
gi|6 : acaagagtaaccagagttatcgcgcttgcactgggattcaaaccattcatcaaagatatggtgataatgcAAT-GTTTGCAATT-----ATAGTCTC--GGTG-----TCTAATTTGTTTTCA-TATAACA--------A----CAC----------------------------CACCACCGTCAAGGTTTTTGTT--CT-----CTCTCAATAAAGGATT--CAATCA--------AGGAAATAGTAATA-CTA----GGA----ATGTTAAAATTTCATCA-GT-ATATTTCTGTCA-A-TTGTT---C------TTTTAAAAA-TACTTACAAAAATATATGTAAGGAATCTATTCTCCCA--TATTTC-TGAAACAAAGCGTGTTTAATAATATTCCATAAAAATTATAAGAGC-AAATTGAGTCGTCAGAAATGATTGTCCAAAAAATGGATAGTTTT-----AAAACGAAATATTTAGCGCAGACACGTAAAAGCTTGGCTCATTT
gi|7 : AATTCAATGAAAACAACCAC-TTTTCTAAAGTGTTTTTATCAAA-TTACT--TAATCTCAAATCCTAATGATTTAAAGTTTTA-ATCC-----GGTATCCAAC-AAAC-AGCCGCAGTCA----CTGGTA-C--G--------------------TCC-TA-ATGGGTTGTATTGT---CA-ATATTG------CACGACTGG-AAA-AACACCACGCGCGATATTTTGATT--TTGAACACTCTT-ATGAAGGATTGAATGT-ATTACCTATAGCAAATTG------CTAGGCTAAAGTT----TT-GAGTCTTACTT-GTCATATTTTTA-TA-A-CAAATGG-TCGA-AACATTAAAAACTCATGTCCA-GATCTATG---------------Cat
gi|8 : TTGAAAACTTTCAC-TTTTCTTAAGAATTTTCAT--A--TTGTT--TAATGTCAATTTAGCAT------AACTTTTACAC-TGTTAAATTAACAGCA-CAATTATCTGCAGTTT----CTGGTCTC--AGTG-----CCTTTTTT-TTTTCC-TG-AA-----GTGCTA----TATATATTA------TTTGATTGT-AAGTAACACCCTACTCAAGGTTTTTGTT--CCA----CTCTT-TCAAAGGATT--AT----------------AAT---CATT--------ACAGTTGATGCTAAGATTTCAGTA-GTCATATTTCTG-CA-A-TTGTTGG-TCGA-ACTTTTGAAAA-TCAT
gi|9 : GTACAGTGTCGTGCTATAAATGAGTC------TATT-T---TTACG---CTACACGTTTCATTGAAAATA-CCAC-TTTTCTCAATT-TTCTCGGTCACATTATT--TGAGGTCAA------GC------ATATTCTAAAC-C-----ACTAACAAAACAAAT-ATCTACAATTTCTCCATGATATC--AGCGAGTATTT---TCT-TTTTTC-TG-AACA------TCA----CGCATATCG------TATGACTGT-ACC-AATACCACACTCTCGGTTTTCATT--CT-----ccagatgagtgattttgtagcaaatgcttcag
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GGATTCAAACATTTATCAAGATATGGTGATAAATGCTATTAATCAAGAATA
Alignments
lowQualScore : 333333 111111 11111 11 1111111111 1 2222 1111 111111 222222222 11111111 1 1111 1 1 1 1 11 333333333333333 1 11111 11 222222
lowQualScore : 4 1 3 0 5 0 999999 3 2 4 2 1 0 66 888 1 1 666666 2 5 22222 5 4 0 8888 11 9999999999 4 2 4 3333 2222 111111 8 4 2 1 555555555 5 777 2 5 88888888 1 55 0 0000 0 0 0 0 5 5 0 0 3 0 11 0 111111111111111 4 5 1 5 5 5 77777 1 888 66 5 6 44 444444 33 1 6 0 6
lowQualScore : . . . . . . ...... . . . . . . .. ... . . ...... . . ..... . . . .... .. .......... . . . .... .... ...... . . . . ......... . ... . . ........ . .. . .... . . . . . . . . . . .. . ............... . . . . . . ..... . ... .. . . .. ...... .. . . . .
lowQualScore : 0 7 2 2 0 2 444444 6 7 4 0 0 1 44 999 7 7 444444 5 0 55555 0 4 8 5555 00 5555555555 0 0 0 5555 5555 555555 0 0 9 9 999999999 0 000 0 0 11111111 4 11 0 6666 2 1 1 0 0 0 0 0 1 0 22 3 222222222222222 3 0 4 7 7 7 11111 0 888 99 0 0 88 222222 55 5 7 7 7
consensus : GTACAGTGTGGTGCCATAAATGAGTCAACTTTTATT-TGTTTTAC----CTATATAATTCATTGAAAACAACCAC-TTCTCTAAATTANTTTCATTAAC-TTACC--NAACCTCAATTTATAGT------AAATTTTACAT-C-----ATTAACAGAA-AAAT-ATCTGCAGTTT----ATGGTCTC--GGTG-----TC---TTT-TTCTCC-TA-AACAG--GCATTA----CACATATTA------TATGACTGT-AAG-AACACCACACTCAAAGTTTTCGTT--CT-----CTCTT-ACAAAGGATT--ATAT-A--------AGGAAATGG-AACT-CTA----AAAGTTGATGTTAAAGTTTCATCA-GTCATATTTCTG-CA-A-TTGTTGG-CAAA-GGTTTTAAAAA-TCATGACTACAATTTATG---------------CCTAGGTGTTTC-AG-AATAAA-CGT-TTTAG----ATTNCATAAAAGTT---AGAGCAAAATTGAGT--TCAG-AATGCTTGTTCAAACAAAGGATGTTTTT-----TCAATGAAATATATAGCGTAAA-ACGTGAAAG-TTGACTCATTT
Reference ( family-85 ) : GTACAGTGTGGTGCCATAAATGAGTCAACTTTTATT-TGTTTTAC----CTATATAATTCATTGAAAACAACCAC-TTCTCTAAATTANTTTCATTAAC-TTACC--NAACCTCAATTTATAGT------AAATTTTACAT-C-----ATTAACAGAA-AAAT-ATCTGCAGTTT----ATGGTCTC--GGTG-----TC---TTT-TTCTCC-TA-AACAG--GCATTA----CACATATTA------TATGACTGT-AAG-AACACCACACTCAAAGTTTTCGTT--CT-----CTCTT-ACAAAGGATT--ATAT-A--------AGGAAATGG-AACT-CTA----AAAGTTGATGTTAAAGTTTCATCA-GTCATATTTCTG-CA-A-TTGTTGG-CAAA-GGTTTTAAAAA-TCATGACTACAATTTATG---------------CCTAGGTGTTTC-AG-AATAAA-CGT-TTTAG----ATTNCATAAAAGTT---AGAGCAAAATTGAGT--TCAG-AATGCTTGTTCAAACAAAGGATGTTTTT-----TCAATGAAATATATAGCGTAAA-ACGTGAAAG-TTGACTCATTT
gi|1 : GTACAGTATGGTGCCATAAATGAGTCAACTTTTATT-TGTTTTAAATTACTATATAATTAATTGAAAACAACCAC-CTCTCTAAATTAGTTTCATTAAC-TTACC--AAACCTCAATTTATAGT------AAATTTTACAT-C-----ATTAACAGAC-AAAT-ATCTGCAGTTT----ATGGTCTT--GGTG-----TC---TTT-TTCTCCATA-AACAG--GTATTA----CACATATTA------TATGACTGT-AAG-AACACCACACTCAAAGTTTTCGTTT-CT-----CTCTT-ACAAAGGATT--ATAT-A--------AGGAAATGG-AACT-CTA----AAAGTTGC------AGTTTCATCA-GTCATATTTCTG-CA-A-TTGTTGG-CAAA-GGTTTTAAAAA-TCATGACTACAATTTATG---------------CCTAGATGTTTC-AG-AATAAA-CGT-TTTAG----ATTTCATAAAAGTT---AGAGCAAAATTGAGT--TCAG-AATGCTTGTTCAAGTAAAGGATGTTTTTCTGAATCAATGAAATATATAGTGTAAA-ATGTGAAAG-TTGACTCATTT
gi|10 : TACAATTTATG---------------TCTAGGTGTTTC-AG-AATAAC-CGT-TTTAG----ATTTCATAAA---------AGCAAAATTGAGT--TCAG-AATGCTTGTTCAATCAAAGGATG-TTTT-----TCAATG-------------AAA-ATGTGAAAG-TTGACTCATTT
gi|11 : ACAGTATGGTGCCATATATGAGTCAACTTTTATT-TGTTTTAC-----TATATAATTCATTGAAAACAACCAC-CTCTCTAGGTTAGTTTCATTAAC-TTACCATTAACCTCAGTTTATAGT------AAatggcactacgctgtaga
gi|12 : TTACATGATAATC---AGAGCAAAATATTCT--TCAA-AGT-TTTATTCCA-CAAAAGATGCTTTC------CATTGAAATATATA-----AA-ACATAATAG-TTGACTAGTTT
gi|12 : TGCAGCGTAGTGTTGTAAACTAGTCAACTATTA---TGTTTTA------TATAT--TTCAATGGAAAacaacactacgctgcatat
gi|13 : ttacatgataatcagagcaaaatattcttcaaagttttattccacaaaagatgcATGAGTCAACTTTTATT-TGTTTTAC-----TATATAATTCATTGAAAACAACCAC-CTCACTAAATTAGTTTCATTAAC-TTACC--AAAACTCAATTTATAGT------AAATTTTACAT-tat
gi|14 : gTGCAGCGTAGTGCCATAAATGAGTCAATTTTTATT-TATTTTA-----CTACATAATTCATTGATAACAGCCACTTTTTCTAAACCATTTCCATt
gi|15 : GTACAGT-TCGTGCTATAAATGAGTC-----TTATTATATTCCG-----CTACAC-GTTCATTGAAAAT-ACCAC-TTTTCC---TCAATTTCg
gi|16 : acTCAGCAGTTT----ATGGTCTC--GATG-----TCT--TTT-TTCCCC-T---ACAG--TCATAA----CACATATCA------TATAACTGC-AAA-AA
gi|2 : TACAGTATGGTGCCATAAATGAGTCAACCTTTACT-TGTTTTAC-----TATATAATTCATTGAAAACAGCCAC-TTCTCTAAGTTAGTTTCATTAAC-TTACC--AAACCTTAATCTATAGT------AAATTGTACAT-C-----ATCAACAGAA-AAAT-ATCTCCAGTTT----ATGGTCTT--GGTG-----TA---TTT-TTCTCCATA-AACAG--CCATTA----TACATATAA------TATGACTGT-AAG-AACACCATACTCAAAGTGTTCGTTT-CT-----CTTTT-ACAAAGGATT--ATAT-A--------AGGAAATGG-AACT-CTA----AAAGTTGATGTTAAAGTTTCATCA-GTCACATTTCTG-CA-A-TTGTTGG-CAAA-AGTTTTAAA------------CA-TTTATG---------------CCTAGGTGTTTC-AG-AATAAC-CGT-TTTAC----ATTTCATAATAGTT---AGAGCAAAATTGAGT--TCAG-AATGCTTGTTCAAACAAATGATG-TTGT-----GCAATGAAATATATAGCGTAAA-ATGTGAAAG-TTGAC
gi|3 : c-----ATTAACAGAA-AAAT-TCCTGCAGTTT----ATGGTCTT--GGTG-----TC---TTT-TTCTCCATA-AACAG--CCATTATATACACATATTACATGTATATGACTGT-AAG-AACACTACACTCAAAGTTTTCGTTAACT-----CTCTT-ACAAAGGATT-----T-A--------AGGAAATGG-AACT-CTA----AAAGTTGATGTTAAAATTTCATCA-ATCATATTTCTG-CACA-TTGTTGG-CAAA-GG-TTTAAAAA-TAATGGTTACAATTTATG---------------CCAAGATCCTTC-AG-AATAAA-CGT-TTTAG----ATTTCATAAAAGTT---AGAGCAAAATTGAGT--TCAG-AATGCTTGTTCAAACAAAGGAT-TTTTT-----TCAATGAAACATATAGCGTAAA-ATGTGAAAG-TTGACTCCTTT
gi|4 : -C-----ATTAACAGAA-AAAT-ATCTGC-GTTT----ATGGTCTTTTGGTG-----TC---TTT-TTCTCC-TA-AACATT-GCATTA----CACATATTA------TATGATTTTTAAG-AACACCACACTCAGA--------------------CTT-ACAATGGATT--ATAT-A--------AGGAAATGG-AACTTCTA----AAAATTGATGTTAAAGTTTCATCAAGTCATATTTCTG-CA-AATTGTTGGGCAAAAGGTTTTAAAA--TCATGACTACAATTTATG---------------C-TAGG-GTTTCCAG-AATAAA-CGT-TTTAG-----TTGGATAAAAGTT---AGAGCAAAATTGAGT--TCAG-AATGatggcactatgctgtaga
gi|5 : acaagagtaaccagagttatcgcgcttgcactgggattcaaaccattcatcaaagatatggtgataatgc-C-----ATTAACAGAA-AAAT-ATCTGC-GTTT----ATGGTCTTTTGGTG-----TC---TTT-TTCTCC-TA-AACATT-GCATTA----CACATATTA------TATGATTTTTAAG-AACACCACACTCAGA--------------------CTT-ACAATGGATT--ATAT-A--------AGGAAATGG-AACTTCTA----AAAATTGATGTTAAAGTTTCATCAAGTCATATTTCTG-CA-AATTGTTGGGCAAAAGGTTTTAAAA--TCATGACTACAATTTATG---------------C-TAGG-GTTTCCAG-AATAAA-CGT-TTTAG-----TTGGATAAAAGTT---AGAGCAAAATTGAGT--TCAG-AATG
gi|6 : acaagagtaaccagagttatcgcgcttgcactgggattcaaaccattcatcaaagatatggtgataatgcAAT-GTTTGCAATT-----ATAGTCTC--GGTG-----TCTAATTTGTTTTCA-TATAACA--------A----CAC----------------------------CACCACCGTCAAGGTTTTTGTT--CT-----CTCTCAATAAAGGATT--CAATCA--------AGGAAATAGTAATA-CTA----GGA----ATGTTAAAATTTCATCA-GT-ATATTTCTGTCA-A-TTGTT---C------TTTTAAAAA-TACTTACAAAAATATATGTAAGGAATCTATTCTCCCA--TATTTC-TGAAACAAAGCGTGTTTAATAATATTCCATAAAAATTATAAGAGC-AAATTGAGTCGTCAGAAATGATTGTCCAAAAAATGGATAGTTTT-----AAAACGAAATATTTAGCGCAGACACGTAAAAGCTTGGCTCATTT
gi|7 : AATTCAATGAAAACAACCAC-TTTTCTAAAGTGTTTTTATCAAA-TTACT--TAATCTCAAATCCTAATGATTTAAAGTTTTA-ATCC-----GGTATCCAAC-AAAC-AGCCGCAGTCA----CTGGTA-C--G--------------------TCC-TA-ATGGGTTGTATTGT---CA-ATATTG------CACGACTGG-AAA-AACACCACGCGCGATATTTTGATT--TTGAACACTCTT-ATGAAGGATTGAATGT-ATTACCTATAGCAAATTG------CTAGGCTAAAGTT----TT-GAGTCTTACTT-GTCATATTTTTA-TA-A-CAAATGG-TCGA-AACATTAAAAACTCATGTCCA-GATCTATG---------------Cat
gi|8 : TTGAAAACTTTCAC-TTTTCTTAAGAATTTTCAT--A--TTGTT--TAATGTCAATTTAGCAT------AACTTTTACAC-TGTTAAATTAACAGCA-CAATTATCTGCAGTTT----CTGGTCTC--AGTG-----CCTTTTTT-TTTTCC-TG-AA-----GTGCTA----TATATATTA------TTTGATTGT-AAGTAACACCCTACTCAAGGTTTTTGTT--CCA----CTCTT-TCAAAGGATT--AT----------------AAT---CATT--------ACAGTTGATGCTAAGATTTCAGTA-GTCATATTTCTG-CA-A-TTGTTGG-TCGA-ACTTTTGAAAA-TCAT
gi|9 : GTACAGTGTCGTGCTATAAATGAGTC------TATT-T---TTACG---CTACACGTTTCATTGAAAATA-CCAC-TTTTCTCAATT-TTCTCGGTCACATTATT--TGAGGTCAA------GC------ATATTCTAAAC-C-----ACTAACAAAACAAAT-ATCTACAATTTCTCCATGATATC--AGCGAGTATTT---TCT-TTTTTC-TG-AACA------TCA----CGCATATCG------TATGACTGT-ACC-AATACCACACTCTCGGTTTTCATT--CT-----ccagatgagtgattttgtagcaaatgcttcag
blockSeqs : A G A A CGC A A T A G CA ATT C T GATTTA C C GTTAA C T CTCC TT AGTATTT G A T GTTG TATA CATGTA T T G C TTGAACA A GAA A C TTACCTAT G TA T GGCT A T C A G A A AC TAAGGAATCTATTCT C T C A G G TAATA T ATA CG A T GC T GC T C C
blockSeqs : G A A . C A A . A G C A A T . C . . . . . TT TCTAA . A . TTG T . T . G C AACT . A A . . G A T . A . . A G A A A . C T C . . . A A . . . A AG G GC T . .
blockSeqs : G A A . C A G . A T C A C T . C . . . . . . CCTTT . . . TTG . . . . G T TCT . A A . . G A . . . . . . . A . A . C T . . . . A T . . . A G T GC C . .
blockSeqs : A C A . C A A . A A C T T A . A . . . . . . TCT . . . GT . . . . A G CCA . A A . . G A . . . . . . . A . A . C T . . . . A T . . . A G A . . . .
blockSeqs : G G A . C A G . A G A T T T . . . . . . . . TA . . . GC . . . . G T CT . C G . . A A . . . . . . . C . . . . . . . . . . G . . . . T . . . . .
blockSeqs : . C . . C G A . T T . T G . . . . . . . . TC . . . GC . . . . G C CT . A . . . T C . . . . . . . C . . . . . . . . . . G . . .
blockSeqs : . . . . T . C T . . . . . . TC . . . G . . . . . . . . . . . . . . . . . . . . . . . . . C . . .
blockSeqs : . . . . T . . . TC . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqCons : C***** CT******* A* G* N*****
originalCons : GTACAGTGTGGTGCCATAAATGAGTCAACTTTTATT-TGTTTTAC----CTATATAATTCATTGAAAACAACCAC-TTCTCTAAATTANTTTCATTAAC-TTACC--NAACCTCAATTTATAGT------AAATTTTACAT-C-----ATTAACAGAA-AAAT-ATCTGCAGTTT----ATGGTCTC--GGTG-----TC---TTT-TTCTCC-TA-AACAG--GCATTA----CACATATTA------TATGACTGT-AAG-AACACCACACTCAAAGTTTTCGTT--CT-----CTCTT-ACAAAGGATT--ATAT-A--------AGGAAATGG-AACT-CTA----AAAGTTGATGTTAAAGTTTCATCA-GTCATATTTCTG-CA-A-TTGTTGG-CAAA-GGTTTTAAAAA-TCATGACTACAATTTATG---------------CCTAGGTGTTTC-AG-AATAAA-CGT-TTTAG----ATTNCATAAAAGTT---AGAGCAAAATTGAGT--TCAG-AATGCTTGTTCAAACAAAGGATGTTTTT-----TCAATGAAATATATAGCGTAAA-ACGTGAAAG-TTGACTCATTT
finalCons : GTACAGTGTGGTGCCATAAATGAGTCAACTTTTATT-TGTTTTAC-----TATATAATTCATTGAAAACAACCAC-TTCTCTAAATTANTTTCATTAAC-TTACC--NAACCTCAATTTATAGT------AAATTTTACAT-C-----ATTAACAGAA-AAAT-ATCTGCAGTTT----ATGGTCTC--GGTG-----TC---TTT-TTCTCC-TA-AACAG--GCATTA----CACATATTA------TATGACTGT-AAG-AACACCACACTCAAAGTTTTCGTTCT-------CTCTT-ACAAAGGATT--ATAT-A--------AGGAAATGG-AACT-CTA----AAAGTTGATGTTAAAGTTTCATCA-GTCATATTTCTG-CA-A-TTGTTGG-CAAA-GGTTTTAAAAA-TCATGACTACAATTTATG---------------CCTAGGTGTTTC-AG-AATAAA-CGT-TTTAG----ATTNCATAAAAGTT---AGAGCAAAATTGAGT--TCAG-AATGCTTGTTCAAACAAAGGATG-TTTTN-----CAATGAAATATATAGCGTAAA-ACGTGAAAG-TTGACTCATTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GGATTCAAACATTTATCAAGATATGGTGATAAATGCTATTAATCAAGAATA
Alignments
lowQualScore : 11111 111111 11111 11 1111111111 1 2222 1111 111111 222222222 11111111 1 1111 1 1 1 1 11 333333333333333 1 11111 2222222
lowQualScore : 4 1 0 666 22222 3 2 4 2 1 0 66 888 1 1 666666 2 5 22222 5 4 0 8888 11 9999999999 4 2 4 3333 2222 111111 8 4 2 1 555555555 5 777 2 5 88888888 1 55 0 0000 0 0 0 0 5 5 0 0 3 0 11 0 111111111111111 4 5 1 5 5 5 77777 1 888 66 5 6 6 0000000 3 1 6 0 6
lowQualScore : . . . ... ..... . . . . . . .. ... . . ...... . . ..... . . . .... .. .......... . . . .... .... ...... . . . . ......... . ... . . ........ . .. . .... . . . . . . . . . . .. . ............... . . . . . . ..... . ... .. . . . ....... . . . . .
lowQualScore : 0 7 4 000 55555 6 7 4 0 0 1 44 999 7 7 444444 5 0 55555 0 4 8 5555 00 5555555555 0 0 0 5555 5555 555555 0 0 9 9 999999999 0 000 0 0 11111111 4 11 0 6666 2 1 1 0 0 0 0 0 1 0 22 3 222222222222222 3 0 4 7 7 7 11111 0 888 99 0 0 7 2222222 2 0 7 7 7
consensus : GTACAGTGTGGTGCCATAAATGAGTCAACTTTTATT-TGTTTTA-----CTATATAATTCATTGAAAACAACCAC-TTCTCTAAATTANTTTCATTAAC-TTACC--NAACCTCAATTTATAGT------AAATTTTACAT-C-----ATTAACAGAA-AAAT-ATCTGCAGTTT----ATGGTCTC--GGTG-----TC---TTT-TTCTCC-TA-AACAG--GCATTA----CACATATTA------TATGACTGT-AAG-AACACCACACTCAAAGTTTTCGTT--CT-----CTCTT-ACAAAGGATT--ATAT-A--------AGGAAATGG-AACT-CTA----AAAGTTGATGTTAAAGTTTCATCA-GTCATATTTCTG-CA-A-TTGTTGG-CAAA-GGTTTTAAAAA-TCATGACTACAATTTATG---------------CCTAGGTGTTTC-AG-AATAAA-CGT-TTTAG----ATTNCATAAAAGTT---AGAGCAAAATTGAGT--TCAG-AATGCTTGTTCAAACAAAGGAT-GTTTT------NCAATGAAATATATAGCGTAAA-ACGTGAAAG-TTGACTCATTT
Reference ( family-85 ) : GTACAGTGTGGTGCCATAAATGAGTCAACTTTTATT-TGTTTTA-----CTATATAATTCATTGAAAACAACCAC-TTCTCTAAATTANTTTCATTAAC-TTACC--NAACCTCAATTTATAGT------AAATTTTACAT-C-----ATTAACAGAA-AAAT-ATCTGCAGTTT----ATGGTCTC--GGTG-----TC---TTT-TTCTCC-TA-AACAG--GCATTA----CACATATTA------TATGACTGT-AAG-AACACCACACTCAAAGTTTTCGTT--CT-----CTCTT-ACAAAGGATT--ATAT-A--------AGGAAATGG-AACT-CTA----AAAGTTGATGTTAAAGTTTCATCA-GTCATATTTCTG-CA-A-TTGTTGG-CAAA-GGTTTTAAAAA-TCATGACTACAATTTATG---------------CCTAGGTGTTTC-AG-AATAAA-CGT-TTTAG----ATTNCATAAAAGTT---AGAGCAAAATTGAGT--TCAG-AATGCTTGTTCAAACAAAGGAT-GTTTT------NCAATGAAATATATAGCGTAAA-ACGTGAAAG-TTGACTCATTT
gi|1 : GTACAGTATGGTGCCATAAATGAGTCAACTTTTATT-TGTTTTAAATTACTATATAATTAATTGAAAACAACCAC-CTCTCTAAATTAGTTTCATTAAC-TTACC--AAACCTCAATTTATAGT------AAATTTTACAT-C-----ATTAACAGAC-AAAT-ATCTGCAGTTT----ATGGTCTT--GGTG-----TC---TTT-TTCTCCATA-AACAG--GTATTA----CACATATTA------TATGACTGT-AAG-AACACCACACTCAAAGTTTTCGTTT-CT-----CTCTT-ACAAAGGATT--ATAT-A--------AGGAAATGG-AACT-CTA----AAAGTTGC------AGTTTCATCA-GTCATATTTCTG-CA-A-TTGTTGG-CAAA-GGTTTTAAAAA-TCATGACTACAATTTATG---------------CCTAGATGTTTC-AG-AATAAA-CGT-TTTAG----ATTTCATAAAAGTT---AGAGCAAAATTGAGT--TCAG-AATGCTTGTTCAAGTAAAGGAT-GTTTTTCTGAATCAATGAAATATATAGTGTAAA-ATGTGAAAG-TTGACTCATTT
gi|10 : TACAATTTATG---------------TCTAGGTGTTTC-AG-AATAAC-CGT-TTTAG----ATTTCATAAAAG---------CAAAATTGAGT--TCAG-AATGCTTGTTCAATCAAAGGAT-GTTTT------TCAATG-------------AAA-ATGTGAAAG-TTGACTCATTT
gi|11 : ACAGTATGGTGCCATATATGAGTCAACTTTTATT-TGTTTTA-----CTATATAATTCATTGAAAACAACCAC-CTCTCTAGGTTAGTTTCATTAAC-TTACCATTAACCTCAGTTTATAGT------AAatggcactacgctgtaga
gi|12 : TTACATGATAATC---AGAGCAAAATATTCT--TCAA-AGT-TTTATTCCA-CAAAAGAT-GCTTT------CCATTGAAATATA-----TAAA-ACATAATAG-TTGACTAGTTT
gi|12 : TGCAGCGTAGTGTTGTAAACTAGTCAACTATTA---TGTTTTA------TATAT--TTCAATGGAAAacaacactacgctgcatat
gi|13 : ttacatgataatcagagcaaaatattcttcaaagttttattccacaaaagatgcATGAGTCAACTTTTATT-TGTTTTA-----CTATATAATTCATTGAAAACAACCAC-CTCACTAAATTAGTTTCATTAAC-TTACC--AAAACTCAATTTATAGT------AAATTTTACAT-tat
gi|14 : gTGCAGCGTAGTGCCATAAATGAGTCAATTTTTATT-TATTTTA-----CTACATAATTCATTGATAACAGCCACTTTTTCTAAACCATTTCCATt
gi|15 : GTACAGT-TCGTGCTATAAATGAGTC-----TTATTATATTCCG-----CTACAC-GTTCATTGAAAAT-ACCAC-TTTTCC---TCAATTTCg
gi|16 : acTCAGCAGTTT----ATGGTCTC--GATG-----TCT--TTT-TTCCCC-T---ACAG--TCATAA----CACATATCA------TATAACTGC-AAA-AA
gi|2 : TACAGTATGGTGCCATAAATGAGTCAACCTTTACT-TGTTTTA-----CTATATAATTCATTGAAAACAGCCAC-TTCTCTAAGTTAGTTTCATTAAC-TTACC--AAACCTTAATCTATAGT------AAATTGTACAT-C-----ATCAACAGAA-AAAT-ATCTCCAGTTT----ATGGTCTT--GGTG-----TA---TTT-TTCTCCATA-AACAG--CCATTA----TACATATAA------TATGACTGT-AAG-AACACCATACTCAAAGTGTTCGTTT-CT-----CTTTT-ACAAAGGATT--ATAT-A--------AGGAAATGG-AACT-CTA----AAAGTTGATGTTAAAGTTTCATCA-GTCACATTTCTG-CA-A-TTGTTGG-CAAA-AGTTTTAAA------------CA-TTTATG---------------CCTAGGTGTTTC-AG-AATAAC-CGT-TTTAC----ATTTCATAATAGTT---AGAGCAAAATTGAGT--TCAG-AATGCTTGTTCAAACAAATGAT-GTTGT------GCAATGAAATATATAGCGTAAA-ATGTGAAAG-TTGAC
gi|3 : c-----ATTAACAGAA-AAAT-TCCTGCAGTTT----ATGGTCTT--GGTG-----TC---TTT-TTCTCCATA-AACAG--CCATTATATACACATATTACATGTATATGACTGT-AAG-AACACTACACTCAAAGTTTTCGTTAACT-----CTCTT-ACAAAGGATT-----T-A--------AGGAAATGG-AACT-CTA----AAAGTTGATGTTAAAATTTCATCA-ATCATATTTCTG-CACA-TTGTTGG-CAAA-GG-TTTAAAAA-TAATGGTTACAATTTATG---------------CCAAGATCCTTC-AG-AATAAA-CGT-TTTAG----ATTTCATAAAAGTT---AGAGCAAAATTGAGT--TCAG-AATGCTTGTTCAAACAAAGGAT-TTTTT------TCAATGAAACATATAGCGTAAA-ATGTGAAAG-TTGACTCCTTT
gi|4 : -C-----ATTAACAGAA-AAAT-ATCTGC-GTTT----ATGGTCTTTTGGTG-----TC---TTT-TTCTCC-TA-AACATT-GCATTA----CACATATTA------TATGATTTTTAAG-AACACCACACTCAGA--------------------CTT-ACAATGGATT--ATAT-A--------AGGAAATGG-AACTTCTA----AAAATTGATGTTAAAGTTTCATCAAGTCATATTTCTG-CA-AATTGTTGGGCAAAAGGTTTTAAAA--TCATGACTACAATTTATG---------------C-TAGG-GTTTCCAG-AATAAA-CGT-TTTAG-----TTGGATAAAAGTT---AGAGCAAAATTGAGT--TCAG-AATGatggcactatgctgtaga
gi|5 : acaagagtaaccagagttatcgcgcttgcactgggattcaaaccattcatcaaagatatggtgataatgc-C-----ATTAACAGAA-AAAT-ATCTGC-GTTT----ATGGTCTTTTGGTG-----TC---TTT-TTCTCC-TA-AACATT-GCATTA----CACATATTA------TATGATTTTTAAG-AACACCACACTCAGA--------------------CTT-ACAATGGATT--ATAT-A--------AGGAAATGG-AACTTCTA----AAAATTGATGTTAAAGTTTCATCAAGTCATATTTCTG-CA-AATTGTTGGGCAAAAGGTTTTAAAA--TCATGACTACAATTTATG---------------C-TAGG-GTTTCCAG-AATAAA-CGT-TTTAG-----TTGGATAAAAGTT---AGAGCAAAATTGAGT--TCAG-AATG
gi|6 : acaagagtaaccagagttatcgcgcttgcactgggattcaaaccattcatcaaagatatggtgataatgcAAT-GTTTGCAATT-----ATAGTCTC--GGTG-----TCTAATTTGTTTTCA-TATAACA--------A----CAC----------------------------CACCACCGTCAAGGTTTTTGTT--CT-----CTCTCAATAAAGGATT--CAATCA--------AGGAAATAGTAATA-CTA----GGA----ATGTTAAAATTTCATCA-GT-ATATTTCTGTCA-A-TTGTT---C------TTTTAAAAA-TACTTACAAAAATATATGTAAGGAATCTATTCTCCCA--TATTTC-TGAAACAAAGCGTGTTTAATAATATTCCATAAAAATTATAAGAGC-AAATTGAGTCGTCAGAAATGATTGTCCAAAAAATGGATAGTTTT------AAAACGAAATATTTAGCGCAGACACGTAAAAGCTTGGCTCATTT
gi|7 : AATTCAATGAAAACAACCAC-TTTTCTAAAGTGTTTTTATCAAA-TTACT--TAATCTCAAATCCTAATGATTTAAAGTTTTA-ATCC-----GGTATCCAAC-AAAC-AGCCGCAGTCA----CTGGTA-C--G--------------------TCC-TA-ATGGGTTGTATTGT---CA-ATATTG------CACGACTGG-AAA-AACACCACGCGCGATATTTTGATT--TTGAACACTCTT-ATGAAGGATTGAATGT-ATTACCTATAGCAAATTG------CTAGGCTAAAGTT----TT-GAGTCTTACTT-GTCATATTTTTA-TA-A-CAAATGG-TCGA-AACATTAAAAACTCATGTCCA-GATCTATG---------------Cat
gi|8 : TTGAAAACTTTCAC-TTTTCTTAAGAATTTTCAT--A--TTGTT--TAATGTCAATTTAGCAT------AACTTTTACAC-TGTTAAATTAACAGCA-CAATTATCTGCAGTTT----CTGGTCTC--AGTG-----CCTTTTTT-TTTTCC-TG-AA-----GTGCTA----TATATATTA------TTTGATTGT-AAGTAACACCCTACTCAAGGTTTTTGTT--CCA----CTCTT-TCAAAGGATT--AT----------------AAT---CATT--------ACAGTTGATGCTAAGATTTCAGTA-GTCATATTTCTG-CA-A-TTGTTGG-TCGA-ACTTTTGAAAA-TCAT
gi|9 : GTACAGTGTCGTGCTATAAATGAGTCTATTTTTAC--------G-----CTACACGTTTCATTGAAAATA-CCAC-TTTTCTCAATT-TTCTCGGTCACATTATT--TGAGGTCAA------GC------ATATTCTAAAC-C-----ACTAACAAAACAAAT-ATCTACAATTTCTCCATGATATC--AGCGAGTATTT---TCT-TTTTTC-TG-AACA------TCA----CGCATATCG------TATGACTGT-ACC-AATACCACACTCTCGGTTTTCATT--CT-----ccagatgagtgattttgtagcaaatgcttcag
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GGATTCAAACATTTATCAAGATATGGTGATAAATGCTATTAATCAAGAATA