lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111
lowQualScore : 222222 2222 11 111111 4444444444 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11 33333 222 1 111 11 1111111 1 1 333333333333 11 222222 111111111111 11111111 111111 11 222222222 33333333333333333333333333333333333 11 1 1111 1 22 11111 11 444444444 22222 1 3333333 1 1 111111 222 2222222222222 444 22 11 1 666666666 1 1
lowQualScore : 444444 5 4444 5 5 0 66 111111 4 8 2222222222 4 4 4 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 00 4 33333 4 4 333 6 6 0 5 111 5 11 1111111 1 5 3 0 2 5 66 5 999999999999 1 4 00 1 000000 5 444444444444 88888888 222222 2 7777 5 00 77 1 444444444 1 1 44444444444444444444444444444444444 4 5 11 3 3 88 3 3 5 5 3 7777 7 8 7 8 22 66666 99 6 333333333 55555 4 5 0 2 8 9999999 55 7 2 0 9 2 111111 000 9999999999999 222 11 0 0 22 2 555555555 8 8 5 5
lowQualScore : ...... . .... . . . .. ...... . . .......... . . . ....................................................................................................... . .. . ..... . . ... . . . . ... . .. ....... . . . . . . .. . ............ . . .. . ...... . ............ ........ ...... . .... . .. .. . ......... . . ................................... . . .. . . .. . . . . . .... . . . . .. ..... .. . ......... ..... . . . . . ....... .. . . . . . ...... ... ............. ... .. . . .. . ......... . . . .
lowQualScore : 444444 0 2222 0 0 2 33 000000 4 9 8888888888 4 4 4 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 66 4 66666 4 4 222 2 2 0 0 111 0 99 5555555 4 0 8 9 2 0 99 0 222222222222 4 4 66 9 777777 4 666666666666 99999999 333333 3 0000 0 00 99 4 444444444 4 4 99999999999999999999999999999999999 0 7 33 7 5 00 3 5 2 8 0 0000 8 0 0 0 22 44444 66 0 888888888 00000 7 0 8 5 8 2222222 55 0 2 8 2 2 888888 888 0000000000000 000 00 8 8 22 8 444444444 0 0 0 0
consensus : AAGAAC---GCGTGCGT-AGGAGT---G-G-AAGGAAACTTTCT----T-ATC-A-CAT----------A-GG-AA-TTT--------GAT--------TG-------------------T--------------------GAA-TATATTT----------T------T-------------ATCAACAG--TGAAATT-TC---CGC-A-TAGC--TTTAGAAAC-A-AGGTTCCAAA-C-T-AA--TTTA---T---TTAAG-A-TGTTAACGACT-T--ATCAAGAGGCG-A-----G-A---TATACAAAGTA-CATGT--AATTAAGATT--ATATTC-----AATGA--TGA---A----AA-ATAC-ATTACAA-TATT-GCCCN-TAAAA--CTTAGAA-----AGATTTTCATAAAA-----T--------T---CT---GAA--------CCCCGA-AAATCACCTTCCATAAATA-TTATCATATNATGTGACT----TAATTTTATACA-ACTTAATTTC-TCCCTCGCCCNCTT-TTGAATTAGAAGAAAATAAGACCA---TGA---AAT-----TGATTTAACGAAGAATTTACGCCAACATCTATGAANGAGAAATTTGCAAATAAATGCGTTTAGAGTGC------ACTACCTAATTTGAAGCGTTTGTCTCTCATAAATAACGCAACTATTTTTCTAA---T--ACGTTTCTTGTATATGCCTCC-GTAT--------ATGCCTAGTATTAGATATTTTACACACATGTTCATAACTTGCTGTGTA-TAAACCGGGCCT-T-TATACCGTTTAGGTGCGTAA
Reference ( gi|2 ) : AAAAAT---GTGTGCGT-AGGAGA---G-G-AAGGAAATTTTCT----T-ATC-A-TAT----------A-GG-AA-TTT--------AAT--------TG-------------------T--------------------GA-------------------T------T-------------ATCAACAG--TGAAATT-TA---AGC-A-TAGC--ATTAGAAAC-A-AGGTTCCAAA-C-T-AA--TTTA---T---TTAAG-A-TGATAACAACT-T--ATCAAGAGGCG-A-----G-C---CATACAAAGTA-CATGT--AATTAAGATT--ATATTC-----AATTA--TGA---A----AA-ATGC-ATTACAA-TATT-GCCCC-TAAAA--CTTAGAA-----AGAATTTCATAAAA-----T--------T---CT---GAA--------CCCCGA-AATTCACCTCCCATAGATA-TTATCATATTATGTGATT----TAATTTTGTACA-ACTAAATTTC-TCCCTAACCCGTTC-TTGAAACAGAAGAAAATAAAACCA---T-----AAT-----TGATTTAACAAAGCATTTACGCCAACATCTATGAACGAGAAATTTGCAAATAAATGTGTTTAGAGTCC------TCTACCTAATTTGAAGCGTTTATCTCTCATAAATAATGCTATTATTTGTCCAA---T--ACGTGTGTTGTATATGCCTCCCGTATACTGGTACATGCC---TATTAAATATTTTACACACATGTTCAAAACTTGTTGTGTATTAAATCGGGCCT-T-TATAACGTTTAGGTGCTTAA
gi|5 : AAGAAC---GCGTGCGT-AGGAGT---G-G-AAGGAAACTTTCT----T-ATT-A-TATT---------A-GG-AA-TTT--------GAG--------TG-------------------T--------------------GAAATATATTTAATATCGAGAT------T-------------ATCAACAG--TGAAATT-TC---CGC-A-TAGC--TTTAGAAAC-A-AGGTTCCAAA-T-T-AA--TTTA---T---TTAAG-A-TGTTAACGACT-T--ATCAAGAGTCG-A-----G-A---TATACAAAGTA-TATGT--AA-TAAGATC--AAATTC-----ATTTA--TGA---A----AA-ATAC--TTAT---TATT-G
gi|11 : aaaggcaaaaaaggggggggggagggggataAAGAAC---ACGTGCAA-AAGAGT---GAG-AAGGAAACTTTCTCAGTT-ATC-A-TATT---------A-AG-AA-TTT--------GAT--------TG-------------------T--------------------GA-------------------C--------------------AT--ACA-----AAATG-TC---AGG-A-TTAT--TTTCG---C-ATAGCTTCCAAAAC-T-AA--TTT----------AAG-A-TGATAACGACT-C--ATCAAGAGGCA-ACGGATA-CATATATACAAATTA-CATGT--ATTT
gi|12 : atagaaaAAAAATTCCG-GTGTGT-AAGAGT---G-G-AACGAAACTT-CT----T-ATC-A-CAT----------A-GG-AA-TTT--------GAT--------TG-------------------TTGAGTATATTTACTCTCAGGGA-------------------T------T-------------ATCAACAG--TGAAGTC-TGTCCGCC-ATTAGC--TTTAGAAAC-A-AATTTCCAAA-CTT-AA--TTTA---T---c
gi|6 : aaatgacaaaaagggataaaggagaaaAAGAAC---G-GTGCGT-AGGAGAATTG-GTAAGGAA--CTTCT----TGATT-AATTT----------A-GG-AA-TTT--------GAG--------TG-------------------T--------------------GAACTATATTTTATA------TCAGAGAT-------------ATCAACAGGATGAAATTCTC---CGC-A-TAGC--TTT-GAACCTA-AGGTTC-AAA-T-T-AAA-TTTA---TATTCTAAGCA-TGTTAACACTC-T--ATCAAGAGTCG-A-----G-A---TATATACAATAGTATGT--AA--AA------ATATTC-----AATAT--TGAC--A----AA-AT-C-AT
gi|16 : aaaaagggggggagggggataAAAACC---GCGTGCGT-AAGAGT---G-A-AAGGAAACATTCT----C-ATT-A-CAT----------AGGG-AA-TTC--------GAT--------TGTTGAATATATTCAATGTAAT--------------------GA-------------------T------T-------------ATCAACAG--TGAAATT-CC---CGC-A-TAGC--
gi|13 : acaaaacaaaaactacagcaacaaaaccaaattAAAAATCCCGTGTGTAT-AG-AGT---G-G-AACGAA-CTTTCT----T-ATCTA-CAT----------A-GG-AATTTT--------GAT--------TG-------------------T--------------------GAAG-----------------T------TTTTTAATGTCAGGATTAATAG--GTAGATG-TC---CGCAA-TAGC---TTAG-AAC-A-AAGTTCCAAA-C-TAAA--TTTA---T---
gi|7 : aaaggctacaatacaaaaagggtaaggcaAAGAAC---GCGTGCGTGAGGAGAT--G-G-TAAGAA--CTTCT----TGATT-AATTT----------A-GGGAA-TTT--------GAG--------TG-------------------T--------------------GAAATATATTTATATCAGAGAT------T-------------ATCAACAGA-TGACATT-TC---CG--A-TAGC--TTT---GACTA-AGGTT-CAAA-T-T-AA--TTTATATT---CTAAGCATTGTTA--AACTCT--ATCAAG-GTCGCA-----GAT---AATATAAA-TA-TATG---AATAAA---T--A-ATTC-----AAT
gi|3 : gcaaaaaagggggggagggggataAAAC---GCACGCGT-AAGAGT---G-G-AAATAAACTTTCT----T-ATT-A-CATGTATATT---A-GG-AA-TTTGAATGTGAAATATATTTAATG-------------------TCAG-----------------GA-------------------T------T-------------ATCAACAG--TGAATTT-TC---TGC-A-TATC--GTTAGAAAC-A-AAGTTCCAAA-A-T-AAAATTTA---T---TTAAG-A-TGTTAACGACT-T--ATCAAGAGGCA-A-----G-A---TATACAAAGTA-CGTGT--AATTGATATC--AAATTC-----AATGA--TGC---A----AA-ATAC-ATTACGA-TATT-GTCCA-TAAAA--CTTTGAA-----GGATTTTCATAAAA-----T--------T---TT---TTA--------ACCCGATAAATCACCTTCCATAAATA-TTATCATATAAT-TGACT----TAATTTTATACA-ACTTAGTTTC-TCTCT--CCCCCTCTTTGAATTAGAAGACAATAAGACCA---TAATCAAAT-----TCATTTAACTAAGAATTTACGCCAACAACTGTGAAGGAGAAATTTGCAAATAAATGCGTTTAAGGTGC------ACTACCTAATTTGAAGCATCTGTCTCTCATAAATAATGCAACT-TTTTTCTAA---T--ACGTTTCTTGTATATGCCTCattgaccaaa
gi|1 : aaggcaaaaataaaaaaaaatgaatAAGTTTCT----T-ATC-A-TATTAGGAATATTA-GG-AA-TTT--------GAT--------TG-------------------T--------------------GAAATATATTTAATGTCAGGAT------T-------------ATAAACAG--TGAATTT-TT---CGC-A-TATCTAGTTAGAAAT-A-AGGTTCCAAA-T-T-AA--TTTA---T---TTAAG-A-TGTCAACGACT-T--ATCAAGAGGCG-A-----G-A---TATACAAAGTA-CATGT--AAT
gi|14 : aaggctaaaatgacaaaaaaagaaaagaaaaaaaaaacccgcttgcgtG-A-TGTTAGCGACT-T---TCAAGAAGCA-A-----A-C----ATACAAAGTA-CAGCTTAAATTAAGATT--ATATTC-----AATGA--TGA---A----AA-ATGCAATCACAACTATT-GCCCG-TAAAA--CTTAG-A-----AGATTTTCATAAAA-----T--------T---CT---GAA---------CCCGA-AAATCACCTCCattgcccctaaaacttagaaagattttcacaaaattttgaatctcgaaaatcaccttccataaatatgtgacttaactgtatacaacttaatttttcccttacccgttttttaattagaagaaaacaagactataatcaaattgatttgacaaagaatttacgccaacatctatgaacgagaaatttgcaaataaatgtgtctagagtccactacatgtacctaatttgaagcgtttaatctcataaatgacaaaattatttttctaatacgtttgttgtatatgcctccagtatatgcctattaaatattttacccatattcaaaacttgctgtgtaatcgggcctttataccgtttaggtgcgtaaa
gi|15 : -TGTTAGCGACT-CTAATCAAGAGGCA-A-----A-A---CATACAAAGTA-CAGCTA-AATTAAGATTAAATATTC-----CA--A--TGACCCA----AG------ATCACA---ATT-GCCCCTTAAAA--CTTG-------------TTC-T-AAA-----T--------T---CT---GAA--------CC---G-AATATACCTTCCAT-GATGTTTATCATAatga
gi|8 : A-CATGT--AATTAAT-TT--ATATTCGGACGAACGAAGTGA---AGGAGAATATAA-ATTAAAA-TATT-GCCGA-TAAAA--CTTAGAA-----AGATTTTCATAAAA-----TAATGATAATGAACTAATGAA--------CCTCGA-AAATCACCTTCCTTAAATA-TTGTTATATGATGTGACA----TAATCTTATACA-ACTTAATTTC-TCCCTCGCCCCTCT-TTGAATTAGAAGAAAATGAGACCA---T-----AAT-----c
gi|1 : TA--TAC---A----AA-GTAC-AT-GTAA-TATT-GCCCC-TAAAA--CTTAGAA-----AGATTTTCACAAAA-----T--------T---TT---GAA--------TCTCGA-AAATCACCTTCCATAAATA-T-----------GTGACT----TAACTGTATACA-ACTTAATTTT-TCCCTTACCCGTTT-TTTAATTAGAAGAAAACAAGACTA---T-----AATCAAATTGATTTGACAAAGAATTTACGCCAACATCTATGAACGAGAAATTTGCAAATAAATGTGTCTAGAGTCCACTACATGTACCTAATTTGAAGCGTTTA-ATCTCATAAATGACAAAATTATTTTTCTAA---T--ACGTTTGTTGTATATGCCTCCAGTAT--------ATGCC---TATTAAATATTTTAC-C-CATATTCAAAACTTGCTGTGT----AATCGGGCCT-T-TATACCGTTTAGGTGCGTAAcata
gi|9 : aaggctaaaatgacaaaaaaagaaaagaaaaaaaaaacccgcttgcgtaagtttcttatcatattaggaatattaggaatttgattgtgaaatatatttaatgtcaggattataaacagtgaatttttcgcatatctagttagaaataaggttccaaattaatttatttaagatgtcaacgacttatcaagaggcgaga-ATTAAAA-TATTTGCCGA-TAAAAATCTTAAAA-----A---TTTTATAAAAAATGATA-------T---AT---GAAACTAATAACCTCGA-AAT-CACTTTCC-T-GATAATTAT--TTTTATGTGATTGACATAACTCTTAACAGACTTAATTTCTTCCCTCGCCC--TC-TTTGAATTGAATGAAATAAGACCA---a
gi|4 : gtaattaattttatcgacaacgaaagtgaaggagaactattaaA-TATT-ACCCC-TAAAA--CTTAGAATTTTTAAAATT-----AAA-----T--------T---CT---GAA--------CCCCGA-AAATCATCTTCCATAAATA-TAATCACATTATGCGACT----TAATTTTATACA-ACTTAATTTT-TCCCTCACCCGCCT-TTGAATAAGAAGAAAATAAGACCAAAATGA---AAT-----TGATTTAACGAAGAATTTACGCCCACATCTATGAAAGAGAAATTTGCAAATAAATGTGTTTAGAGTGC------ACTGCCTAATTTGAAGCGTTTGTCTCTCATAAATAATGCAACTATTTTTCTAA---T--ACG--------------CTCCTGTAT--------ATGCT---TATTAA--ATTTTACACACATGTTCAAAACTTGCTGTGTA--AA--CGGGCCT-T-TATACCGTTTAGGTGCGTAAatatcat
gi|10 : tTCTCTGAACGAGAAATTTGCAAATAAATGCGTTTTGAGTGC------ACTACCTAATTTGAAGCGTTTGTCTCTCATAAATAATGCAACTATTTTTCAAA---T--ACGTTTTTTGTATATGCCTCCCATAT--------ATGCCTAGTATTAGATATTTTACACACATGTTCATAACTTGCTGTGTA--AA--CGGGCCT-T-TATACCGTTTAGGTGCGTAAag
gi|17 : TATTT--TCAA---TTTACGTTTCTTGTATATGCCTCC---------ATATATGCCTAGTATTAG--ATTCTACACACATGTTTCTAACTTG-CGTG---TAAAC--GGCCTAT-TATACCGTTag
gi|18 : TTTTCCAAATTT--ACGTTTCTTGTATATGCCTCC---ATATT-----ATGCCTAGTATTAGA---TTTACACACATGTTC-TAACTTGCTGTG---TAAAC--GGCCT-TATATACCGTTATGGTGCatgtgacgtaaa
Alignments
lowQualScore : 111111111111111111111111111111111
lowQualScore : 111 5555555555 1 222222222222222222222222222222222 111 1 111111111 111111 11111111 111 111111111 22222222222222222222222222222222222 1 333333333333 222222 111 3333333333 111 11 22222222
lowQualScore : 4 4 222 4 4 8888 4 6 1111111111 4 4 0 4 4 4 6 888888888888888888888888888888888 4 99 55 55 99 4 8 66 7 1 8 4 4 222 777 777 0 4 11 9999 1 4 999999999 4 1 4 0 88 2 555555 1 22222222 0 222 4 9999 777777777 555 0 0 4 4 4 1 66 0 0 44 0 888 77777777777777777777777777777777777 5 0 66 5 22 3 6 6 6 6 2 1 2 666666666666 4 1 333333 0 2 0 6 000 77 5 5555555555 6 666 44 77 77777777 6 6 6
lowQualScore : . . ... . . .... . . .......... . . . . . . . ................................. . .. .. .. .. . . .. . . . . . ... ... ... . . .. .... . . ......... . . . . .. . ...... . ........ . ... . .... ......... ... . . . . . . .. . . .. . ... ................................... . . .. . .. . . . . . . . . ............ . . ...... . . . . ... .. . .......... . ... .. .. ........ . . .
lowQualScore : 4 4 222 4 4 5555 0 4 0000000000 0 0 8 0 0 0 0 333333333333333333333333333333333 0 55 55 55 55 0 0 11 3 8 9 4 4 444 888 888 0 4 22 3333 1 4 000000000 4 9 0 7 66 1 777777 1 00000000 7 555 0 4444 000000000 222 9 2 4 4 4 0 99 4 1 55 2 888 44444444444444444444444444444444444 0 4 99 7 00 3 7 7 7 7 2 0 3 111111111111 2 0 000000 8 8 8 0 000 99 7 5555555555 7 888 55 22 33333333 7 7 7
consensus : AAGAACGCGTGCGT-A-GGAG---TG-G-AAGGAAACTTTCT----TATC-ACATT---------AGG-AATTT-GATTG-T-G-AA-TATATTTAAT-TCGGGA-T----------T----------ATCAACA-G--T--GAA--ATT--TCCG-CA-TAGCT--TTAGAAAC-AAGGTTCCAAAC-T-AA--TTTA---T---TTAAG-A-TGTTAACGACT-T--ATCAAGAGGCG-A-G-------AT-ATACAAAGTA-CATGT--AATTAAGATT--ATATT--C-----AATGA---TGA-A----AA-A-------TAC-ATTACAA-TATT-G-CCCNTAAAA--CTTAGAAAGATTTTCATAA---AA-----T--------T---CT---GAA--------CCCCGA-AAATCACCTTCC--ATAAATA-TTATCATATNATGTGACTTAATT-TTATACA-ACTTAATTTC-TCCCTCGCCCNCCTTTGAATTAGAAGAAAATAAGACCA---TA---A---AATTGATTTAACGAAGAATTTACGCCAACATCTATGAACGAGAAATTTGCAAATAAATGCGTTTAGAGTGCAC------TACCTAATTTGAAGCGTTTGTCTCTCATAAATAATGCAACTATTTTTCTAA---T--ACGTTTCTTGTATATGCCT-CC---------GTA-TATGCCTAGTATTAGATATTTTACACACATGTTCANAACTTGCTGTGTA-TAAACCGGGCCT-T-TATACCGTTTAGGTG-CGTAA
Reference ( family-829 ) : AAGAACGCGTGCGT-A-GGAG---TG-G-AAGGAAACTTTCT----TATC-ACAT----------AGG-AATTT-GATTG-T-G-AA-TATATTT-----------T----------T----------ATCAACA-G--T--GAA--ATT--TCCG-CA-TAGCT--TTAGAAAC-AAGGTTCCAAAC-T-AA--TTTA---T---TTAAG-A-TGTTAACGACT-T--ATCAAGAGGCG-A-G-------AT-ATACAAAGTA-CATGT--AATTAAGATT--ATATT--C-----AATGA---TGA-A----AA-A-------TAC-ATTACAA-TATT-G-CCCNTAAAA--CTTAGAAAGATTTTCATAA---AA-----T--------T---CT---GAA--------CCCCGA-AAATCACCTTCC--ATAAATA-TTATCATATNATGTGACTTAATT-TTATACA-ACTTAATTTC-TCCCTCGCCCNCTTTTGAATTAGAAGAAAATAAGACCA---TG---A---AATTGATTTAACGAAGAATTTACGCCAACATCTATGAANGAGAAATTTGCAAATAAATGCGTTTAGAGTGCAC------TACCTAATTTGAAGCGTTTGTCTCTCATAAATAACGCAACTATTTTTCTAA---T--ACGTTTCTTGTATATGCCT-CC---------GTA-TATGCCTAGTATTAGATATTTTACACACATGTTCATAACTTGCTGTGTA-TAAACCGGGCCT-T-TATACCGTTTAGGTG-CGTAA
gi|1 : AAGTTTCT----TATC-ATATTAGGAATATTAGG-AATTT-GATTG-T-G-AAATATATTTAATGTCAGGA-T----------T----------ATAAACA-G--T--GAA--TTT--TTCG-CA-TATCTAGTTAGAAAT-AAGGTTCCAAAT-T-A------A---T---TTA-----T-TTAA-GA---T--GTCAA----CG-A-C-------TT-AT-CAAGAGG-CG----------AGAT---ATAC---------------------A----AA-G-------TAC-AT-GTAA-TATT-G-CCCCTAAAA--CTTAGAAAGATTTTCACAA---AA-----T--------T---TT---GAA--------TCTCGA-AAATCACCTTCC--ATAAATA-T-----------GTGACTTAACT-GTATACA-ACTTAATTTT-TCCCTTACCCGTTTTTTAATTAGAAGAAAACAAGACTA---TA---ATCAAATTGATTTGACAAAGAATTTACGCCAACATCTATGAACGAGAAATTTGCAAATAAATGTGTCTAGAGTCCACTACATGTACCTAATTTGAAGCGTTTA-ATCTCATAAATGACAAAATTATTTTTCTAA---T--ACGTTTGTTGTATATGCCT-CCA--------GTA-TATGCC---TATTAAATATTTTAC-C-CATATTCAAAACTTGCTGTGT----AATCGGGCCT-T-TATACCGTTTAGGTG-CGTAA
gi|10 : aaggctaaaatgacaaaaaaagaaaagaaaaaaaaaacccgcttgcgtTCTCTGAACGAGAAATTTGCAAATAAATGCGTTTTGAGTGCAC------TACCTAATTTGAAGCGTTTGTCTCTCATAAATAATGCAACTATTTTTCAAA---T--ACGTTTTTTGTATATGCCTCCC---------ATA-TATGCCTAGTATTAGATATTTTACACACATGTTCATAACTTGCTGTGTA--AA--CGGGCCT-T-TATACCGTTTAGGTG-CGTAAa
gi|11 : AAGAACACGTGCAA-A-AGAG---TGAG-AAGGAAACTTTCTCAGTTATC-ATATT---------AAG-AATTT-GATTG-T-G--A-CATA--------------------------------------CAAAATG--TCAGGATTATT--TTCG-CA-TAGCT--TC-----C-A-------AAAC-T-A------A---T---TTAAG-A-TGATAACGACT-C--ATCAAGAGGCA-ACGGATACATAT-ATACAAATTA-CATGT--ATTTag
gi|12 : atagaaaGTGTGT-A-AGAG---TG-G-AACGAAACTT-CT----TATC-ACAT----------AGG-AATTT-GATTGTT-G-AG-TATATTTACTCTCAGGGAT----------T----------ATCAACA-G--T--GAA--GTCTGTCCGCCATTAGCT--TTAGAAAC-AAATTTCCAAACTT-AA--TTTA---T---c
gi|13 : aaatgacaaaaagggataaaggagaaaaaaaattccgCGTGTGT-ATAGAG---TG-G-AACGAA-CTTTCT----TATCTACAT----------AGG-AATTTTGATTG-T-G-AA----GTTT-----------T----------TTAATGTCAGGATTAATA-G--G--TAG--ATG--TCCG-CAATAGCT--T-AGAA-C-AAAGTTCCAAAC-TAAA--TTTA---T---
gi|14 : aaaggctacaatacaaaaagggtaaggcaaaaaatccG-A-TGTTAGCGACT-T---TCAAGAAGCA-A---------AC-ATACAAAGTA-CAGCTTAAATTAAGATT--ATATT--C-----AATGA---TGA-A----AA-A-------TGCAATCACAACTATT-G-CCCGTAAAA--CTTAG-AAGATTTTCATAA---AA-----T--------T---CT---GAA---------CCCGA-AAATCACC-TCC--ATGA
gi|15 : -TGTTAGCGACT-CTAATCAAGAGGCA-A-A-------AC-ATACAAAGTA-CAGCTA-AATTAAGATTAAATATTC-C-----AATGA---CCC-A----AG-------------ATCACA---ATT-GCCCCTTAAAA--CTT------GTTCT----A---AA-----T--------T---CT---GAA----------CCGA-ATAT-ACCTTCC--AT-GATGTTTATCATA
gi|16 : AAAACCGCGTGCGT-A-AGAG---TG-A-AAGGAAACATTCT----CATT-ACAT----------AGGGAATTC-GATTG-TTG-AA-TATATTCAATGTAATGA-T----------T----------ATCAACA-G--T--GAA--ATT--CCCG-CA-TAGCc
gi|17 : acaaaacaaaaactacagcaacaaaaccaaattTTTTC-AA---TTTACGTTTCTTGTATATGCCT-CC---------ATA-TATGCCTAGTATTAG--ATTCTACACACATGTTTCTAACTTGC---GTG-TAAAC--GGCCTAT-TATACCG-TTATGTGACGTAA
gi|18 : taTTTTCCAAATTT--ACGTTTCTTGTATATGCCT-CC---------ATATTATGCCTAGTATTAGA---TTTACACACATGTTC-TAACTTGCTGTG---TAAAC--GGCCT-TATATACCGTTATGGTG-CGa
gi|2 : AAAAATGTGTGCGT-A-GGAG---AG-G-AAGGAAATTTTCT----TATC-ATAT----------AGG-AATTT-AATTG-T-G-A--------------------T----------T----------ATCAACA-G--T--GAA--ATT--TAAG-CA-TAGCA--TTAGAAAC-AAGGTTCCAAAC-T-AA--TTTA---T---TTAAG-A-TGATAACAACT-T--ATCAAGAGGCG-A-G-------CC-ATACAAAGTA-CATGT--AATTAAGATT--ATATT--C-----AATTA---TGA-A----AA-A-------TGC-ATTACAA-TATT-G-CCCCTAAAA--CTTAGAAAGAATTTCATAA---AA-----T--------T---CT---GAA--------CCCCGA-AATTCACCTCCC--ATAGATA-TTATCATATTATGTGATTTAATT-TTGTACA-ACTAAATTTC-TCCCTAACCCGTTCTTGAAACAGAAGAAAATAAAACCA---T--------AATTGATTTAACAAAGCATTTACGCCAACATCTATGAACGAGAAATTTGCAAATAAATGTGTTTAGAGTCCTC------TACCTAATTTGAAGCGTTTATCTCTCATAAATAATGCTATTATTTGTCCAA---T--ACGTGTGTTGTATATGCCT-CCCGTATACTGGTA-CATGCC---TATTAAATATTTTACACACATGTTCAAAACTTGTTGTGTATTAAATCGGGCCT-T-TATAACGTTTAGGTG-CTTAAgt
gi|3 : AACGCACGCGT-A-AGAG---TG-G-AAATAAACTTTCT----TATT-ACATGTATATT---AGG-AATTT-GAATG-T-G-AAATATATTTAATGTCAGGA-T----------T----------ATCAACA-G--T--GAA--TTT--TCTG-CA-TATCG--TTAGAAAC-AAAGTTCCAAAA-T-AAAATTTA---T---TTAAG-A-TGTTAACGACT-T--ATCAAGAGGCA-A-G-------AT-ATACAAAGTA-CGTGT--AATTGATATC--AAATT--C-----AATGA---TGC-A----AA-A-------TAC-ATTACGA-TATT-G-TCCATAAAA--CTTTGAAGGATTTTCATAA---AA-----T--------T---TT---TTA--------ACCCGATAAATCACCTTCC--ATAAATA-TTATCATATAAT-TGACTTAATT-TTATACA-ACTTAGTTTC-TCTCTCCCCCTC-TTTGAATTAGAAGACAATAAGACCA---TAATCA---AATTCATTTAACTAAGAATTTACGCCAACAACTGTGAAGGAGAAATTTGCAAATAAATGCGTTTAAGGTGCAC------TACCTAATTTGAAGCATCTGTCTCTCATAAATAATGCAACT-TTTTTCTAA---T--ACGTTTCTTGTATATGCCT-C
gi|4 : aaggcaaaaataaaaaaaaatgaataA-TATT-A-CCCCTAAAA--CTTAGAA---TTTTTAAAATTAAA-----T--------T---CT---GAA--------CCCCGA-AAATCATCTTCC--ATAAATA-TAATCACATTATGCGACTTAATT-TTATACA-ACTTAATTTT-TCCCTCACCCGCCTTTGAATAAGAAGAAAATAAGACCAAAATG---A---AATTGATTTAACGAAGAATTTACGCCCACATCTATGAAAGAGAAATTTGCAAATAAATGTGTTTAGAGTGCAC------TGCCTAATTTGAAGCGTTTGTCTCTCATAAATAATGCAACTATTTTTCTAA---T--ACG-CTCCTGTATATGCT--------------------------TATTAA--ATTTTACACACATGTTCAAAACTTGCTGTGTA--AA--CGGGCCT-T-TATACCGTTTAGGTG-CGTAA
gi|5 : tAAGAACGCGTGCGT-A-GGAG---TG-G-AAGGAAACTTTCT----TATT-ATATT---------AGG-AATTT-GAGTG-T-G-AAATATATTTAATATCGAGA-T----------T----------ATCAACA-G--T--GAA--ATT--TCCG-CA-TAGCT--TTAGAAAC-AAGGTTCCAAAT-T-AA--TTTA---T---TTAAG-A-TGTTAACGACT-T--ATCAAGAGTCG-A-G-------AT-ATACAAAGTA-TATGT--AA-TAAGATC--AAATT--C-----ATTTA---TGA-A----AA-A-------TAC--TTAT---TATT-G-ag
gi|6 : aaaggcaaaaaaggggggggggagggggataAAGAACG-GTGCGT-A-GGAGAATTG-G-TAAGGAACTTCTT----GATT-A-ATTT--------AGG-AATTT-GAGTG-T-G-AACTATATTT-----------TATATCAGAGAT----------ATCAACA-GGAT--GAA--ATTC-TCCG-CA-TAGCT--TT-GAACCTAAGGTTC-AAAT-T-AAA-TTTA---TATTCTAAGCA-TGTTAAC-ACTCT--ATCAAGAGTCG-A-G-------AT-ATATACAATAGTATGT--AA--AA------ATATT--C-----AATAT---TGACA----AA-A-------T-C-AT
gi|7 : aaaaagggggggagggggataAAGAACGCGTGCGTGA-GGAGA--TG-GTAAG--AACTTCTT----GATT-A-ATTTA-------GGG-AATTT-GAGTG-T-GAAA-TATATTTATATCAGAGA-T----------T----------ATCAACA-GA-T--GAC--ATT--TCCG--A-TAGCT--TT---GACTAAGGTT-CAAAT-T-AA--TTTATATT---CTAAGCATTGTTAA--ACTCT--ATCAAG-GTCGCA-G-------ATAATATAAA-TA-TATG---AATAAA---T--A-ATT--C-----AATAT---TGA-
gi|8 : gcaaaaaagggggggagggggataA-CATGT--AATTAAT-TT--ATATT--CGGACGAACGAAG-TGA-AGGAGAATA-------TAA-ATTAAAA-TATT-G-CCGATAAAA--CTTAGAAAGATTTTCATAA---AA-----TAATGATAATGAACTAATGAA--------CCTCGA-AAATCACCTTCC--TTAAATA-TTGTTATATGATGTGACATAATC-TTATACA-ACTTAATTTC-TCCCTCGCCCCTCTTTGAATTAGAAGAAAATGAGACCA---TA---A---ccaaa
gi|9 : GT--AATTAA--TT--TTATCGAC-----AACGAAAGTGA-A----GG-AGAACTATTAA-ATTAAAA-TATTTG-CCGATAAAAATCTTAAAAA---TTTTATAA---AAAATGATA-------T---AT---GAAACTAATAACCTCGA-AA-TCACTTTCCTGATAATTA-TTTTTATGTGAT-TGACATAACTCTTA-ACAGACTTAATTTCTTCCCTCGCCCTC-TTTGAATT-GAATGAAATAAGACCA---tcata
Alignments
lowQualScore : 111 1111111 111111111 111 3 111 1 111111111 111111 11111111 111 111111111 22222222222222222222222222222222222 11 333333333333 222222 111 3333333333 111 11 22222222
lowQualScore : 4 4 222 4 4 8888 4 1 9999999 4 666666666 4 0 4 4 4 777 4 2 66 0 99 4 55 8 4 888 7 1 8 4 4 222 777 777 0 4 11 9999 1 4 999999999 4 1 4 0 88 2 555555 1 22222222 0 222 4 9999 777777777 555 0 0 4 4 4 1 66 0 0 44 0 888 77777777777777777777777777777777777 5 0 66 5 22 3 6 6 6 6 6 00 000000000000 4 333333 0 0 6 000 77 5 5555555555 6 666 44 44 77777777 6 6 6
lowQualScore : . . ... . . .... . . ....... . ......... . . . . . ... . . .. . .. . .. . . ... . . . . . ... ... ... . . .. .... . . ......... . . . . .. . ...... . ........ . ... . .... ......... ... . . . . . . .. . . .. . ... ................................... . . .. . .. . . . . . . .. ............ . ...... . . . ... .. . .......... . ... .. .. ........ . . .
lowQualScore : 4 4 222 4 4 5555 0 4 8888888 0 000000000 0 8 0 0 0 444 0 0 11 8 55 0 55 0 0 111 3 8 9 4 4 444 888 888 0 4 22 3333 1 4 000000000 4 9 0 7 66 1 777777 1 00000000 7 555 0 4444 000000000 222 9 2 4 4 4 0 99 4 1 55 2 888 44444444444444444444444444444444444 0 4 99 7 00 3 7 7 7 7 3 00 333333333333 2 000000 8 8 0 000 99 7 5555555555 7 888 55 22 33333333 7 7 7
consensus : AAGAACGCGTGCGT-A-GGAG---TG-G-AAGGAAACTTTCT----TATC-ACAT------TA-GGAAT---------TT-GATTG-T-G-A-A-TATATTTA-ATGTC-GGGATTATCAACAG--TGAAATT-T--CCGC-AT-AGCT--TTAGAAAC-AAGGTTCCAAAC-T-AA--TTTA---T---TTAAG-A-TGTTAACGACT-T--ATCAAGAGGCG-A-G-------AT-ATACAAAGTA-CATGT--AATTAAGATT--ATATT--C-----AATGA---TGA-A----AA-A-------TAC-ATTACAA-TATT-G-CCCNTAAAA--CTTAGAAAGATTTTCATAA---AA-----T--------T---CT---GAA--------CCCCGA-AAATCACCTTCC--ATAAATA-TTATCATATNATGTGACTTAATT-TTATACA-ACTTAATTTC-TCCCTCGCCCNTCTTTGAATTAGAAGAAAATAAGACCA---TA---A---AATTGATTTAACGAAGAATTTACGCCAACATCTATGAACGAGAAATTTGCAAATAAATGCGTTTAGAGTGCAC------TACCTAATTTGAAGCGTTTGTCTCTCATAAATAATGCAACTATTTTTCTAA---T--ACGTTTCTTGTATATGCCT-CC---------GTA-TATGCCTAGTATTAGATATTTTACACACATGTTCANAACTTGCTGTGTA-TAAACCGGGCCT-T-TATACCGTTTAGGTG-CGTAA
Reference ( family-829 ) : AAGAACGCGTGCGT-A-GGAG---TG-G-AAGGAAACTTTCT----TATC-ACAT------TA-GGAAT---------TT-GATTG-T-G-A-A-TATATTTA-AT-TC-GGGATTATCAACAG--TGAAATT-T--CCGC-AT-AGCT--TTAGAAAC-AAGGTTCCAAAC-T-AA--TTTA---T---TTAAG-A-TGTTAACGACT-T--ATCAAGAGGCG-A-G-------AT-ATACAAAGTA-CATGT--AATTAAGATT--ATATT--C-----AATGA---TGA-A----AA-A-------TAC-ATTACAA-TATT-G-CCCNTAAAA--CTTAGAAAGATTTTCATAA---AA-----T--------T---CT---GAA--------CCCCGA-AAATCACCTTCC--ATAAATA-TTATCATATNATGTGACTTAATT-TTATACA-ACTTAATTTC-TCCCTCGCCCNCCTTTGAATTAGAAGAAAATAAGACCA---TA---A---AATTGATTTAACGAAGAATTTACGCCAACATCTATGAACGAGAAATTTGCAAATAAATGCGTTTAGAGTGCAC------TACCTAATTTGAAGCGTTTGTCTCTCATAAATAATGCAACTATTTTTCTAA---T--ACGTTTCTTGTATATGCCT-CC---------GTA-TATGCCTAGTATTAGATATTTTACACACATGTTCANAACTTGCTGTGTA-TAAACCGGGCCT-T-TATACCGTTTAGGTG-CGTAA
gi|1 : AAGTTTCT----TATC-ATAT------TA-GGAATATTAGGAATTT-GATTG-T-G-A-AATATATTTA-ATGTC-AGGATTATAAACAG--TGAATTT-T--TCGC-AT-ATCTAGTTAGAAAT-AAGGTTCCAAAT-T-A------A---T---TTA-----T-TTAA-GA---T--GTCAA----CG-A-C-------TT-AT-CAAGAGG-CG----------AGAT---ATAC---------------------A----AA-G-------TAC-AT-GTAA-TATT-G-CCCCTAAAA--CTTAGAAAGATTTTCACAA---AA-----T--------T---TT---GAA--------TCTCGA-AAATCACCTTCC--ATAAATA-T-----------GTGACTTAACT-GTATACA-ACTTAATTTT-TCCCTTACCCGTTTTTTAATTAGAAGAAAACAAGACTA---TA---ATCAAATTGATTTGACAAAGAATTTACGCCAACATCTATGAACGAGAAATTTGCAAATAAATGTGTCTAGAGTCCACTACATGTACCTAATTTGAAGCGTTTA-ATCTCATAAATGACAAAATTATTTTTCTAA---T--ACGTTTGTTGTATATGCCT-CCA--------GTA-TATGCC---TATTAAATATTTTAC-C-CATATTCAAAACTTGCTGTGT----AATCGGGCCT-T-TATACCGTTTAGGTG-CGTAA
gi|10 : aaggctaaaatgacaaaaaaagaaaagaaaaaaaaaacccgcttgcgtTCTCTGAACGAGAAATTTGCAAATAAATGCGTTTTGAGTGCAC------TACCTAATTTGAAGCGTTTGTCTCTCATAAATAATGCAACTATTTTTCAAA---T--ACGTTTTTTGTATATGCCTCCC---------ATA-TATGCCTAGTATTAGATATTTTACACACATGTTCATAACTTGCTGTGTA--AA--CGGGCCT-T-TATACCGTTTAGGTG-CGTAAa
gi|11 : AAGAACACGTGCAA-A-AGAG---TGAG-AAGGAAACTTTCTCAGTTATC-ATAT------TA-AGAAT---------TT-GATTG-T-G-ACA-TACA--AA-ATGTC-AGGATT--------------ATT-T--TCGC-AT-AGCT--TC-----C-A-------AAAC-T-A------A---T---TTAAG-A-TGATAACGACT-C--ATCAAGAGGCA-ACGGATACATAT-ATACAAATTA-CATGT--ATTTag
gi|12 : atagaaaGTGTGT-A-AGAG---TG-G-AACGAAACTT-CT----TATC-ACAT-------A-GGAAT---------TT-GATTG-TTG-A-G-TATATTTA-CTCTCAGGGATTATCAACAG--TGAAGTC-TGTCCGCCATTAGCT--TTAGAAAC-AAATTTCCAAACTT-AA--TTTA---T---c
gi|13 : aaatgacaaaaagggataaaggagaaaaaaaattccgCGTGTGT-ATAGAG---TG-G-AACGAA-CTTTCT----TATCTACAT-------A-GGAAT---------TTTGATTG-T-G-A-A-GTTTTTTA-ATGTC-AGGATT---AATAG--GTAGATG-T--CCGCAAT-AGC---TTAG-AAC-AAAGTTCCAAAC-TAAA--TTTA---T---
gi|14 : aaaggctacaatacaaaaagggtaaggcaaaaaatccG-A-TGTTAGCGACT-T---TCAAGAAGCA-A---------AC-ATACAAAGTA-CAGCTTAAATTAAGATT--ATATT--C-----AATGA---TGA-A----AA-A-------TGCAATCACAACTATT-G-CCCGTAAAA--CTTAG-AAGATTTTCATAA---AA-----T--------T---CT---GAA---------CCCGA-AAATCACC-TCC--ATGA
gi|15 : -TGTTAGCGACT-CTAATCAAGAGGCA-A-A-------AC-ATACAAAGTA-CAGCTA-AATTAAGATTAAATATTC-C-----AATGA---CCC-A----AG-------------ATCACA---ATT-GCCCCTTAAAA--CTT------GTTCT----A---AA-----T--------T---CT---GAA----------CCGA-ATAT-ACCTTCC--AT-GATGTTTATCATA
gi|16 : AAAACCGCGTGCGT-A-AGAG---TG-A-AAGGAAACATTCT----CATT-ACAT------AG-GGAAT---------TC-GATTGTT-G-A-A-TATATTCA-ATGTA-ATGATTATCAACAG--TGAAATT-C--CCGC-AT-AGCc
gi|17 : acaaaacaaaaactacagcaacaaaaccaaattTTTTC-AA---TTTACGTTTCTTGTATATGCCT-CC---------ATA-TATGCCTAGTATTAG--ATTCTACACACATGTTTCTAACTTGC---GTG-TAAAC--GGCCTAT-TATACCG-TTATGTGACGTAA
gi|18 : taTTTTCCAAATTT--ACGTTTCTTGTATATGCCT-CC---------ATATTATGCCTAGTATTAGA---TTTACACACATGTTC-TAACTTGCTGTG---TAAAC--GGCCT-TATATACCGTTATGGTG-CGa
gi|2 : AAAAATGTGTGCGT-A-GGAG---AG-G-AAGGAAATTTTCT----TATC-ATAT-------A-GGAAT---------TT-AATTG-T-G-A----------------------TTATCAACAG--TGAAATT-T--AAGC-AT-AGCA--TTAGAAAC-AAGGTTCCAAAC-T-AA--TTTA---T---TTAAG-A-TGATAACAACT-T--ATCAAGAGGCG-A-G-------CC-ATACAAAGTA-CATGT--AATTAAGATT--ATATT--C-----AATTA---TGA-A----AA-A-------TGC-ATTACAA-TATT-G-CCCCTAAAA--CTTAGAAAGAATTTCATAA---AA-----T--------T---CT---GAA--------CCCCGA-AATTCACCTCCC--ATAGATA-TTATCATATTATGTGATTTAATT-TTGTACA-ACTAAATTTC-TCCCTAACCCGTTCTTGAAACAGAAGAAAATAAAACCA---T--------AATTGATTTAACAAAGCATTTACGCCAACATCTATGAACGAGAAATTTGCAAATAAATGTGTTTAGAGTCCTC------TACCTAATTTGAAGCGTTTATCTCTCATAAATAATGCTATTATTTGTCCAA---T--ACGTGTGTTGTATATGCCT-CCCGTATACTGGTA-CATGCC---TATTAAATATTTTACACACATGTTCAAAACTTGTTGTGTATTAAATCGGGCCT-T-TATAACGTTTAGGTG-CTTAAgt
gi|3 : AACGCACGCGT-A-AGAG---TG-G-AAATAAACTTTCT----TATT-ACATGTATATTA-GGAAT---------TT-GAATG-T-G-A-AATATATTTA-ATGTC-AGGATTATCAACAG--TGAATTT-T--CTGC-AT-ATCG--TTAGAAAC-AAAGTTCCAAAA-T-AAAATTTA---T---TTAAG-A-TGTTAACGACT-T--ATCAAGAGGCA-A-G-------AT-ATACAAAGTA-CGTGT--AATTGATATC--AAATT--C-----AATGA---TGC-A----AA-A-------TAC-ATTACGA-TATT-G-TCCATAAAA--CTTTGAAGGATTTTCATAA---AA-----T--------T---TT---TTA--------ACCCGATAAATCACCTTCC--ATAAATA-TTATCATATAAT-TGACTTAATT-TTATACA-ACTTAGTTTC-TCTCTC-CCCCTCTTTGAATTAGAAGACAATAAGACCA---TAATCA---AATTCATTTAACTAAGAATTTACGCCAACAACTGTGAAGGAGAAATTTGCAAATAAATGCGTTTAAGGTGCAC------TACCTAATTTGAAGCATCTGTCTCTCATAAATAATGCAACT-TTTTTCTAA---T--ACGTTTCTTGTATATGCCT-C
gi|4 : aaggcaaaaataaaaaaaaatgaataA-TATT-A-CCCCTAAAA--CTTAGAA---TTTTTAAAATTAAA-----T--------T---CT---GAA--------CCCCGA-AAATCATCTTCC--ATAAATA-TAATCACATTATGCGACTTAATT-TTATACA-ACTTAATTTT-TCCCTCACCCGCCTTTGAATAAGAAGAAAATAAGACCAAAATG---A---AATTGATTTAACGAAGAATTTACGCCCACATCTATGAAAGAGAAATTTGCAAATAAATGTGTTTAGAGTGCAC------TGCCTAATTTGAAGCGTTTGTCTCTCATAAATAATGCAACTATTTTTCTAA---T--ACG-CTCCTGTATATGCT--------------------------TATTAA--ATTTTACACACATGTTCAAAACTTGCTGTGTA--AA--CGGGCCT-T-TATACCGTTTAGGTG-CGTAA
gi|5 : tAAGAACGCGTGCGT-A-GGAG---TG-G-AAGGAAACTTTCT----TATT-ATAT------TA-GGAAT---------TT-GAGTG-T-G-A-AATATATTTA-ATATC-GAGATTATCAACAG--TGAAATT-T--CCGC-AT-AGCT--TTAGAAAC-AAGGTTCCAAAT-T-AA--TTTA---T---TTAAG-A-TGTTAACGACT-T--ATCAAGAGTCG-A-G-------AT-ATACAAAGTA-TATGT--AA-TAAGATC--AAATT--C-----ATTTA---TGA-A----AA-A-------TAC--TTAT---TATT-G-ag
gi|6 : aaaggcaaaaaaggggggggggagggggataAAGAACG-GTGCGT-A-GGAGAATTG-G-TAAGGAACTTCTT----GATT-AATT------TA-GGAAT---------TT-GAGTG-T-G-A-ACTATATTTT-ATATC-AGAGATATCAACAGGATGAAATTCT--CCGC-AT-AGCT--TT-GAACCTAAGGTTC-AAAT-T-AAA-TTTA---TATTCTAAGCA-TGTTAAC-ACTCT--ATCAAGAGTCG-A-G-------AT-ATATACAATAGTATGT--AA--AA------ATATT--C-----AATAT---TGACA----AA-A-------T-C-AT
gi|7 : aaaaagggggggagggggataAAGAACGCGTGCGTGA-GGAGA--TG-GTAAG--AACTTCTT----GATT-AATT------TAGGGAAT---------TT-GAGTG-T-GAA-A-TATATTTATAT-CA-GAGATTATCAACAGA-TGACATT-T--CCG--AT-AGCT--TT---GACTAAGGTT-CAAAT-T-AA--TTTATATT---CTAAGCATTGTTAA--ACTCT--ATCAAG-GTCGCA-G-------ATAATATAAA-TA-TATG---AATAAA---T--A-ATT--C-----AATAT---TGA-
gi|8 : gcaaaaaagggggggagggggataA-CATGT--AATTAAT-TT--ATATT--CGGACGAACGAAG-TGA-AGGAGAATA-------TAA-ATTAAAA-TATT-G-CCGATAAAA--CTTAGAAAGATTTTCATAA---AA-----TAATGATAATGAACTAATGAA--------CCTCGA-AAATCACCTTCC--TTAAATA-TTGTTATATGATGTGACATAATC-TTATACA-ACTTAATTTC-TCCCTCGCCCCTCTTTGAATTAGAAGAAAATGAGACCA---TA---A---ccaaa
gi|9 : GT--AATTAA--TT--TTATCGAC-----AACGAAAGTGA-A----GG-AGAACTATTAA-ATTAAAA-TATTTG-CCGATAAAAATCTTAAAAA---TTTTATAA---AAAATGATA-------T---AT---GAAACTAATAACCTCGA-AA-TCACTTTCCTGATAATTA-TTTTTATGTGAT-TGACATAACTCTTA-ACAGACTTAATTTCTTCCCTCGCCCT-CTTTGAATT-GAATGAAATAAGACCA---tcata
Alignments
lowQualScore : 111 1111111 111111111 222 111 1 111111111 111111 11111111 111 111111111 22222222222222222222222222222222222 33333333 222222 111 3333333333 111 11 22222222
lowQualScore : 4 4 222 4 4 8888 4 1 9999999 4 666666666 4 0 4 4 111 0 8888 0 99 4 55 8 4 888 7 1 8 4 4 222 777 777 0 4 11 9999 1 4 999999999 4 1 4 0 88 2 555555 1 22222222 0 222 4 9999 777777777 555 0 0 4 4 4 1 66 0 0 44 0 888 77777777777777777777777777777777777 5 0 66 55 0 3 6 6 6 6 6 7 44444444 4 333333 0 0 6 000 77 5 5555555555 6 666 44 44 77777777 6 6 6
lowQualScore : . . ... . . .... . . ....... . ......... . . . . ... . .... . .. . .. . . ... . . . . . ... ... ... . . .. .... . . ......... . . . . .. . ...... . ........ . ... . .... ......... ... . . . . . . .. . . .. . ... ................................... . . .. .. . . . . . . . . ........ . ...... . . . ... .. . .......... . ... .. .. ........ . . .
lowQualScore : 4 4 222 4 4 5555 0 4 8888888 0 000000000 0 8 0 0 444 7 3333 8 55 0 55 0 0 111 3 8 9 4 4 444 888 888 0 4 22 3333 1 4 000000000 4 9 0 7 66 1 777777 1 00000000 7 555 0 4444 000000000 222 9 2 4 4 4 0 99 4 1 55 2 888 44444444444444444444444444444444444 0 4 99 99 3 3 7 7 7 7 3 5 55555555 2 000000 8 8 0 000 99 7 5555555555 7 888 55 22 33333333 7 7 7
consensus : AAGAACGCGTGCGT-A-GGAG---TG-G-AAGGAAACTTTCT----TATC-ACAT------TAGG-AAT---------TT-GATTG-T-GA-AATATATTTAATGTC-AG-GATTATCAACAG--TGAAATT-T--CCGC-AT-AGCT--TTAGAAAC-AAGGTTCCAAAC-T-AA--TTTA---T---TTAAG-A-TGTTAACGACT-T--ATCAAGAGGCG-A-G-------AT-ATACAAAGTA-CATGT--AATTAAGATT--ATATT--C-----AATGA---TGA-A----AA-A-------TAC-ATTACAA-TATT-G-CCCNTAAAA--CTTAGAAAGATTTTCATAA---AA-----T--------T---CT---GAA--------CCCCGA-AAATCACCTTCC--ATAAATA-TTATCATATNATGTGACTTAATT-TTATACA-ACTTAATTTC-TCCCTCGCCCGTCTTTGAATTAGAAGAAAATAAGACCA---TAATCAAATTGATTTAACGAAGAATTTACGCCAACATCTATGAACGAGAAATTTGCAAATAAATGCGTTTAGAGTGCAC------TACCTAATTTGAAGCGTTTGTCTCTCATAAATAATGCAACTATTTTTCTAA---T--ACGTTTCTTGTATATGCCT-CC---------GTA-TATGCCTAGTATTAGATATTTTACACACATGTTCANAACTTGCTGTGTA-TAAACCGGGCCT-T-TATACCGTTTAGGTG-CGTAA
Reference ( family-829 ) : AAGAACGCGTGCGT-A-GGAG---TG-G-AAGGAAACTTTCT----TATC-ACAT------TAGG-AAT---------TT-GATTG-T-GA-A-TATATTTAATGTC-GG-GATTATCAACAG--TGAAATT-T--CCGC-AT-AGCT--TTAGAAAC-AAGGTTCCAAAC-T-AA--TTTA---T---TTAAG-A-TGTTAACGACT-T--ATCAAGAGGCG-A-G-------AT-ATACAAAGTA-CATGT--AATTAAGATT--ATATT--C-----AATGA---TGA-A----AA-A-------TAC-ATTACAA-TATT-G-CCCNTAAAA--CTTAGAAAGATTTTCATAA---AA-----T--------T---CT---GAA--------CCCCGA-AAATCACCTTCC--ATAAATA-TTATCATATNATGTGACTTAATT-TTATACA-ACTTAATTTC-TCCCTCGCCCNTCTTTGAATTAGAAGAAAATAAGACCA---TA---AAATTGATTTAACGAAGAATTTACGCCAACATCTATGAACGAGAAATTTGCAAATAAATGCGTTTAGAGTGCAC------TACCTAATTTGAAGCGTTTGTCTCTCATAAATAATGCAACTATTTTTCTAA---T--ACGTTTCTTGTATATGCCT-CC---------GTA-TATGCCTAGTATTAGATATTTTACACACATGTTCANAACTTGCTGTGTA-TAAACCGGGCCT-T-TATACCGTTTAGGTG-CGTAA
gi|1 : AAGTTTCT----TATC-ATAT------TAGG-AATATTAGGAATTT-GATTG-T-GA-AATATATTTAATGTC-AG-GATTATAAACAG--TGAATTT-T--TCGC-AT-ATCTAGTTAGAAAT-AAGGTTCCAAAT-T-A------A---T---TTA-----T-TTAA-GA---T--GTCAA----CG-A-C-------TT-AT-CAAGAGG-CG----------AGAT---ATAC---------------------A----AA-G-------TAC-AT-GTAA-TATT-G-CCCCTAAAA--CTTAGAAAGATTTTCACAA---AA-----T--------T---TT---GAA--------TCTCGA-AAATCACCTTCC--ATAAAT------------ATGTGACTTAACT-GTATACA-ACTTAATTTT-TCCCTTACCCGTTTTTTAATTAGAAGAAAACAAGACTA---TAATCAAATTGATTTGACAAAGAATTTACGCCAACATCTATGAACGAGAAATTTGCAAATAAATGTGTCTAGAGTCCACTACATGTACCTAATTTGAAGCGTTTA-ATCTCATAAATGACAAAATTATTTTTCTAA---T--ACGTTTGTTGTATATGCCT-CCA--------GTA-TATGCC---TATTAAATATTTTAC-C-CATATTCAAAACTTGCTGTGT----AATCGGGCCT-T-TATACCGTTTAGGTG-CGTAA
gi|10 : aaggctaaaatgacaaaaaaagaaaagaaaaaaaaaacccgcttgcgtTCTCTGAACGAGAAATTTGCAAATAAATGCGTTTTGAGTGCAC------TACCTAATTTGAAGCGTTTGTCTCTCATAAATAATGCAACTATTTTTCAAA---T--ACGTTTTTTGTATATGCCTCCC---------ATA-TATGCCTAGTATTAGATATTTTACACACATGTTCATAACTTGCTGTGTA--AA--CGGGCCT-T-TATACCGTTTAGGTG-CGTAAa
gi|11 : AAGAACACGTGCAA-A-AGAG---TGAG-AAGGAAACTTTCTCAGTTATC-ATAT------TAAG-AAT---------TT-GATTG-T-GACA-TACA--AAATGTC-AG-GATT--------------ATT-T--TCGC-AT-AGCT--TC-----C-A-------AAAC-T-A------A---T---TTAAG-A-TGATAACGACT-C--ATCAAGAGGCA-ACGGATACATAT-ATACAAATTA-CATGT--ATTTag
gi|12 : atagaaaGTGTGT-A-AGAG---TG-G-AACGAAACTT-CT----TATC-ACAT-------AGG-AAT---------TT-GATTG-TTGA-G-TATATTTACTCTCAGG-GATTATCAACAG--TGAAGTC-TGTCCGCCATTAGCT--TTAGAAAC-AAATTTCCAAACTT-AA--TTTA---T---c
gi|13 : aaatgacaaaaagggataaaggagaaaaaaaattccgCGTGTGT-ATAGAG---TG-G-AACGAA-CTTTCT----TATCTACAT-------AGG-AAT---------TTTGATTG-T-GA-A-GTTTTTTAATGTC-AG-GATT---AATAG--GTAGATG-T--CCGCAAT-AGC---TTAG-AAC-AAAGTTCCAAAC-TAAA--TTTA---T---
gi|14 : aaaggctacaatacaaaaagggtaaggcaaaaaatccG-A-TGTTAGCGACT-T---TCAAGAAGCA-A---------AC-ATACAAAGTA-CAGCTTAAATTAAGATT--ATATT--C-----AATGA---TGA-A----AA-A-------TGCAATCACAACTATT-G-CCCGTAAAA--CTTAG-AAGATTTTCATAA---AA-----T--------T---CT---GAA---------CCCGA-AAATCACC-TCC--ATGA
gi|15 : -TGTTAGCGACT-CTAATCAAGAGGCA-A-A-------AC-ATACAAAGTA-CAGCTA-AATTAAGATTAAATATTC-C-----AATGA---CCC-A----AG-------------ATCACA---ATT-GCCCCTTAAAA--CTT------GTTCT----A---AA-----T--------T---CT---GAA----------CCGA-ATAT-ACCTTCC--AT-GATGTTTATCATA
gi|16 : AAAACCGCGTGCGT-A-AGAG---TG-A-AAGGAAACATTCT----CATT-ACAT------AGGG-AAT---------TC-GATTGTT-GA-A-TATATTCAATGTA-AT-GATTATCAACAG--TGAAATT-C--CCGC-AT-AGCc
gi|17 : acaaaacaaaaactacagcaacaaaaccaaattTTTTC-AA---TTTACGTTTCTTGTATATGCCT-CC---------ATA-TATGCCTAGTATTAG--ATTCTACACACATGTTTCTAACTTGC---GTG-TAAAC--GGCCTAT-TATACCG-TTATGTGACGTAA
gi|18 : taTTTTCCAAATTT--ACGTTTCTTGTATATGCCT-CC---------ATATTATGCCTAGTATTAGA---TTTACACACATGTTC-TAACTTGCTGTG---TAAAC--GGCCT-TATATACCGTTATGGTG-CGa
gi|2 : AAAAATGTGTGCGT-A-GGAG---AG-G-AAGGAAATTTTCT----TATC-ATAT-------AGG-AAT---------TT-AATTG-T-GA----------------------TTATCAACAG--TGAAATT-T--AAGC-AT-AGCA--TTAGAAAC-AAGGTTCCAAAC-T-AA--TTTA---T---TTAAG-A-TGATAACAACT-T--ATCAAGAGGCG-A-G-------CC-ATACAAAGTA-CATGT--AATTAAGATT--ATATT--C-----AATTA---TGA-A----AA-A-------TGC-ATTACAA-TATT-G-CCCCTAAAA--CTTAGAAAGAATTTCATAA---AA-----T--------T---CT---GAA--------CCCCGA-AATTCACCTCCC--ATAGATA-TTATCATATTATGTGATTTAATT-TTGTACA-ACTAAATTTC-TCCCTAACCCGTTCTTGAAACAGAAGAAAATAAAACCA---T-----AATTGATTTAACAAAGCATTTACGCCAACATCTATGAACGAGAAATTTGCAAATAAATGTGTTTAGAGTCCTC------TACCTAATTTGAAGCGTTTATCTCTCATAAATAATGCTATTATTTGTCCAA---T--ACGTGTGTTGTATATGCCT-CCCGTATACTGGTA-CATGCC---TATTAAATATTTTACACACATGTTCAAAACTTGTTGTGTATTAAATCGGGCCT-T-TATAACGTTTAGGTG-CTTAAgt
gi|3 : AACGCACGCGT-A-AGAG---TG-G-AAATAAACTTTCT----TATT-ACATGTATATTAGG-AAT---------TT-GAATG-T-GA-AATATATTTAATGTC-AG-GATTATCAACAG--TGAATTT-T--CTGC-AT-ATCG--TTAGAAAC-AAAGTTCCAAAA-T-AAAATTTA---T---TTAAG-A-TGTTAACGACT-T--ATCAAGAGGCA-A-G-------AT-ATACAAAGTA-CGTGT--AATTGATATC--AAATT--C-----AATGA---TGC-A----AA-A-------TAC-ATTACGA-TATT-G-TCCATAAAA--CTTTGAAGGATTTTCATAA---AA-----T--------T---TT---TTA--------ACCCGATAAATCACCTTCC--ATAAATA-TTATCATATAAT-TGACTTAATT-TTATACA-ACTTAGTTTC-TCTCTC-CCCCTCTTTGAATTAGAAGACAATAAGACCA---TAATCAAATTCATTTAACTAAGAATTTACGCCAACAACTGTGAAGGAGAAATTTGCAAATAAATGCGTTTAAGGTGCAC------TACCTAATTTGAAGCATCTGTCTCTCATAAATAATGCAACT-TTTTTCTAA---T--ACGTTTCTTGTATATGCCT-C
gi|4 : aaggcaaaaataaaaaaaaatgaataA-TATT-A-CCCCTAAAA--CTTAGAA---TTTTTAAAATTAAA-----T--------T---CT---GAA--------CCCCGA-AAATCATCTTCC--ATAAATA-TAATCACATTATGCGACTTAATT-TTATACA-ACTTAATTTT-TCCCTCACCCGCCTTTGAATAAGAAGAAAATAAGACCAAAATG---AAATTGATTTAACGAAGAATTTACGCCCACATCTATGAAAGAGAAATTTGCAAATAAATGTGTTTAGAGTGCAC------TGCCTAATTTGAAGCGTTTGTCTCTCATAAATAATGCAACTATTTTTCTAA---T--ACG-CTCCTGTATATGCT--------------------------TATTAA--ATTTTACACACATGTTCAAAACTTGCTGTGTA--AA--CGGGCCT-T-TATACCGTTTAGGTG-CGTAA
gi|5 : tAAGAACGCGTGCGT-A-GGAG---TG-G-AAGGAAACTTTCT----TATT-ATAT------TAGG-AAT---------TT-GAGTG-T-GA-AATATATTTAATATC-GA-GATTATCAACAG--TGAAATT-T--CCGC-AT-AGCT--TTAGAAAC-AAGGTTCCAAAT-T-AA--TTTA---T---TTAAG-A-TGTTAACGACT-T--ATCAAGAGTCG-A-G-------AT-ATACAAAGTA-TATGT--AA-TAAGATC--AAATT--C-----ATTTA---TGA-A----AA-A-------TAC--TTAT---TATT-G-ag
gi|6 : aaaggcaaaaaaggggggggggagggggataAAGAACG-GTGCGT-A-GGAGAATTG-G-TAAGGAACTTCTT----GATT-AATT------TAGG-AAT---------TT-GAGTG-T-GA-ACTATATTTTATATC-AG-AGATATCAACAGGATGAAATTCT--CCGC-AT-AGCT--TT-GAACCTAAGGTTC-AAAT-T-AAA-TTTA---TATTCTAAGCA-TGTTAAC-ACTCT--ATCAAGAGTCG-A-G-------AT-ATATACAATAGTATGT--AA--AA------ATATT--C-----AATAT---TGACA----AA-A-------T-C-AT
gi|7 : aaaaagggggggagggggataAAGAACGCGTGCGTGA-GGAGA--TG-GTAAG--AACTTCTT----GATT-AATT------TAGGGAAT---------TT-GAGTG-T-GA-AATATATTTA-TATC-AGAGATTATCAACAGA-TGACATT-T--CCG--AT-AGCT--TT---GACTAAGGTT-CAAAT-T-AA--TTTATATT---CTAAGCATTGTTAA--ACTCT--ATCAAG-GTCGCA-G-------ATAATATAAA-TA-TATG---AATAAA---T--A-ATT--C-----AATAT---TGA-
gi|8 : gcaaaaaagggggggagggggataA-CATGT--AATTAAT-TT--ATATT--CGGACGAACGAAG-TGA-AGGAGAATA-------TAA-ATTAAAA-TATT-G-CCGATAAAA--CTTAGAAAGATTTTCATAA---AA-----TAATGATAATGAACTAATGAA--------CCTCGA-AAATCACCTTCC--TTAAATA-TTGTTATATGATGTGACATAATC-TTATACA-ACTTAATTTC-TCCCTCGCCCCTCTTTGAATTAGAAGAAAATGAGACCA---TA---Accaaa
gi|9 : GT--AATTAA--TT--TTATCGAC-----AACGAAAGTGA-A----GG-AGAACTATTAA-ATTAAAA-TATTTG-CCGATAAAAATCTTAAAAA---TTTTATAA---AAAATGATA-------T---AT---GAAACTAATAACCTCGA-AA-TCACTTTCCTGATAATTA-TTTTTATGTGAT-TGACATAACTCTTA-ACAGACTTAATTTCTTCCCTCGCCC-TCTTTGAATT-GAATGAAATAAGACCA---tcata
Alignments
lowQualScore : 111 1111111 111111111 111 1 111111111 111111 11111111 111 111111111 22222222222222222222222222222222222 1 222222 111 3333333333 111 11 22222222
lowQualScore : 4 4 222 4 4 8888 4 1 4444444 4 4 666666666 0 0 444 0 99 99 4 4 4 888 7 1 8 3 4 8 888 555 0 4 11 9999 1 4 999999999 4 1 4 0 88 2 555555 1 22222222 0 222 4 9999 777777777 555 0 0 4 4 4 1 66 0 0 44 0 888 77777777777777777777777777777777777 5 0 66 5 22 3 6 6 6 6 2 0 3 4 333333 0 0 6 000 77 5 5555555555 6 666 44 44 77777777 6 6 6
lowQualScore : . . ... . . .... . . ....... . . ......... . . ... . .. .. . . . ... . . . . . . ... ... . . .. .... . . ......... . . . . .. . ...... . ........ . ... . .... ......... ... . . . . . . .. . . .. . ... ................................... . . .. . .. . . . . . . . . . ...... . . . ... .. . .......... . ... .. .. ........ . . .
lowQualScore : 4 4 222 4 4 5555 0 4 9999999 0 0 000000000 8 9 666 8 55 55 0 0 0 111 3 8 9 9 4 9 000 666 0 4 22 3333 1 4 000000000 4 9 0 7 66 1 777777 1 00000000 7 555 0 4444 000000000 222 9 2 4 4 4 0 99 4 1 55 2 888 44444444444444444444444444444444444 0 4 99 7 00 3 7 7 7 7 2 8 5 2 000000 8 8 0 000 99 7 5555555555 7 888 55 22 33333333 7 7 7
consensus : AAGAACGCGTGCGT-A-GGAG---TG-G-AAGGAAACTTTCT----TATC-ACAT------TAGG-AA-T---------TTGATTGTGAAATATATTTAATGTCA-G-GATTATCAACAG--TGAAATT--TCCG-C-A-TAGCT--TTAGAAAC-AAGGTTCCAAAC-T-AA--TTTA---TTTAAG-A-TGTTAACGACT-T--ATCAAGAGGCG-A-G-------AT-ATACAAAGTA-CATGT--AATTAAGATT--ATATT--C-----AATGA---TGA-A----AA-A-------TAC-ATTACAA-TATT-G-CCCNTAAAA--CTTAGAAAGATTTTCATAA---AA-----T--------T---CT---GAA--------CCCCGA-AAATCACCTTCC--ATAAATA-TTATCATATNATGTGACTTAATT-TTATACA-ACTTAATTTC-TCCCTCGCCCGTCTTTGAATTAGAAGAAAATAAGACCATAATCAAATTGATTTAACGAAGAATTTACGCCAACATCTATGAACGAGAAATTTGCAAATAAATGCGTTTAGAGTGCAC------TACCTAATTTGAAGCGTTTGTCTCTCATAAATAATGCAACTATTTTTCTAA---T--ACGTTTCTTGTATATGCCT-CC---------GTA-TATGCCTAGTATTAGATATTTTACACACATGTTCANAACTTGCTGTGTA-TAAACCGGGCCT-T-TATACCGTTTAGGTG-CGTAA
Reference ( family-829 ) : AAGAACGCGTGCGT-A-GGAG---TG-G-AAGGAAACTTTCT----TATC-ACAT------TAGG-AA-T---------TTGATTGTGAAATATATTTAATGTCA-G-GATTATCAACAG--TGAAATT--TCCG-C-A-TAGCT--TTAGAAAC-AAGGTTCCAAAC-T-AA--TTTA---TTTAAG-A-TGTTAACGACT-T--ATCAAGAGGCG-A-G-------AT-ATACAAAGTA-CATGT--AATTAAGATT--ATATT--C-----AATGA---TGA-A----AA-A-------TAC-ATTACAA-TATT-G-CCCNTAAAA--CTTAGAAAGATTTTCATAA---AA-----T--------T---CT---GAA--------CCCCGA-AAATCACCTTCC--ATAAATA-TTATCATATNATGTGACTTAATT-TTATACA-ACTTAATTTC-TCCCTCGCCCGTCTTTGAATTAGAAGAAAATAAGACCATAATCAAATTGATTTAACGAAGAATTTACGCCAACATCTATGAACGAGAAATTTGCAAATAAATGCGTTTAGAGTGCAC------TACCTAATTTGAAGCGTTTGTCTCTCATAAATAATGCAACTATTTTTCTAA---T--ACGTTTCTTGTATATGCCT-CC---------GTA-TATGCCTAGTATTAGATATTTTACACACATGTTCANAACTTGCTGTGTA-TAAACCGGGCCT-T-TATACCGTTTAGGTG-CGTAA
gi|1 : AAGTTTCT----TATC-ATAT------TAGG-AA-TATTAGGAATTTGATTGTGAAATATATTTAATGTCA-G-GATTATAAACAG--TGAATTT--TTCG-C-A-TATCTAGTTAGAAAT-AAGGTTCCAAAT-T-A------A---TTTA-----T-TTAA-GA---T--GTCAA----CG-A-C-------TT-AT-CAAGAGG-CG----------AGAT---ATAC---------------------A----AA-G-------TAC-AT-GTAA-TATT-G-CCCCTAAAA--CTTAGAAAGATTTTCACAA---AA-----T--------T---TT---GAA--------TCTCGA-AAATCACCTTCC--ATAAATA-T-----------GTGACTTAACT-GTATACA-ACTTAATTTT-TCCCTTACCCGTTTTTTAATTAGAAGAAAACAAGACTATAATCAAATTGATTTGACAAAGAATTTACGCCAACATCTATGAACGAGAAATTTGCAAATAAATGTGTCTAGAGTCCACTACATGTACCTAATTTGAAGCGTTTA-ATCTCATAAATGACAAAATTATTTTTCTAA---T--ACGTTTGTTGTATATGCCT-CCA--------GTA-TATGCC---TATTAAATATTTTAC-C-CATATTCAAAACTTGCTGTGT----AATCGGGCCT-T-TATACCGTTTAGGTG-CGTAA
gi|10 : aaggctaaaatgacaaaaaaagaaaagaaaaaaaaaacccgcttgcgtTCTCTGAACGAGAAATTTGCAAATAAATGCGTTTTGAGTGCAC------TACCTAATTTGAAGCGTTTGTCTCTCATAAATAATGCAACTATTTTTCAAA---T--ACGTTTTTTGTATATGCCTCCC---------ATA-TATGCCTAGTATTAGATATTTTACACACATGTTCATAACTTGCTGTGTA--AA--CGGGCCT-T-TATACCGTTTAGGTG-CGTAAa
gi|11 : AAGAACACGTGCAA-A-AGAG---TGAG-AAGGAAACTTTCTCAGTTATC-ATAT------TAAG-AA-T---------TTGATTGTGACATACA--AAATGTCA-G-GATT--------------ATT--TTCG-C-A-TAGCT--TC-----C-A-------AAAC-T-A------A---TTTAAG-A-TGATAACGACT-C--ATCAAGAGGCA-ACGGATACATAT-ATACAAATTA-CATGT--ATTTag
gi|12 : atagaaaGTGTGT-A-AGAG---TG-G-AACGAAACTT-CT----TATC-ACAT-------AGG-AA-T---------TTGATTGTTGAGTATATTTACTCTCAGG-GATTATCAACAG--TGAAGTCTGTCCGCC-ATTAGCT--TTAGAAAC-AAATTTCCAAACTT-AA--TTTA---Tc
gi|13 : aaatgacaaaaagggataaaggagaaaaaaaattccgCGTGTGT-ATAGAG---TG-G-AACGAA-CTTTCT----TATCTACA-------TAGG-AATT---------TTGATTGTGAAGT-TTTTTAATGTCA-G-GATT---AATAG--GTAGATG--TCCG-CAA-TAGC---TTAG-AAC-AAAGTTCCAAAC-TAAA--TTTA---T
gi|14 : aaaggctacaatacaaaaagggtaaggcaaaaaatccG-A-TGTTAGCGACT-T---TCAAGAAGCA-A---------AC-ATACAAAGTA-CAGCTTAAATTAAGATT--ATATT--C-----AATGA---TGA-A----AA-A-------TGCAATCACAACTATT-G-CCCGTAAAA--CTTAG-AAGATTTTCATAA---AA-----T--------T---CT---GAA---------CCCGA-AAATCACC-TCC--ATGA
gi|15 : -TGTTAGCGACT-CTAATCAAGAGGCA-A-A-------AC-ATACAAAGTA-CAGCTA-AATTAAGATTAAATATTC-C-----AATGA---CCC-A----AG-------------ATCACA---ATT-GCCCCTTAAAA--CTT------GTTCT----A---AA-----T--------T---CT---GAA----------CCGA-ATAT-ACCTTCC--AT-GATGTTTATCATA
gi|16 : AAAACCGCGTGCGT-A-AGAG---TG-A-AAGGAAACATTCT----CATT-ACAT------AGGG-AA-T---------TCGATTGTTGAATATATTCAATGTAA-T-GATTATCAACAG--TGAAATT--CCCG-C-A-TAGCc
gi|17 : acaaaacaaaaactacagcaacaaaaccaaattTTTTC-AA---TTTACGTTTCTTGTATATGCCT-CC---------ATA-TATGCCTAGTATTAG--ATTCTACACACATGTTTCTAACTTGC---GTG-TAAAC--GGCCTAT-TATACCG-TTATGTGACGTAA
gi|18 : taTTTTCCAAATTT--ACGTTTCTTGTATATGCCT-CC---------ATATTATGCCTAGTATTAGA---TTTACACACATGTTC-TAACTTGCTGTG---TAAAC--GGCCT-TATATACCGTTATGGTG-CGa
gi|2 : AAAAATGTGTGCGT-A-GGAG---AG-G-AAGGAAATTTTCT----TATC-ATAT-------AGG-AA-T---------TTAATTGTGA---------------------TTATCAACAG--TGAAATT--TAAG-C-A-TAGCA--TTAGAAAC-AAGGTTCCAAAC-T-AA--TTTA---TTTAAG-A-TGATAACAACT-T--ATCAAGAGGCG-A-G-------CC-ATACAAAGTA-CATGT--AATTAAGATT--ATATT--C-----AATTA---TGA-A----AA-A-------TGC-ATTACAA-TATT-G-CCCCTAAAA--CTTAGAAAGAATTTCATAA---AA-----T--------T---CT---GAA--------CCCCGA-AATTCACCTCCC--ATAGATA-TTATCATATTATGTGATTTAATT-TTGTACA-ACTAAATTTC-TCCCTAACCCGTTCTTGAAACAGAAGAAAATAAAACCAT-----AATTGATTTAACAAAGCATTTACGCCAACATCTATGAACGAGAAATTTGCAAATAAATGTGTTTAGAGTCCTC------TACCTAATTTGAAGCGTTTATCTCTCATAAATAATGCTATTATTTGTCCAA---T--ACGTGTGTTGTATATGCCT-CCCGTATACTGGTA-CATGCC---TATTAAATATTTTACACACATGTTCAAAACTTGTTGTGTATTAAATCGGGCCT-T-TATAACGTTTAGGTG-CTTAAgt
gi|3 : AACGCACGCGT-A-AGAG---TG-G-AAATAAACTTTCT----TATT-ACATGTATATTAGG-AA-T---------TTGAATGTGAAATATATTTAATGTCA-G-GATTATCAACAG--TGAATTT--TCTG-C-A-TATCG--TTAGAAAC-AAAGTTCCAAAA-T-AAAATTTA---TTTAAG-A-TGTTAACGACT-T--ATCAAGAGGCA-A-G-------AT-ATACAAAGTA-CGTGT--AATTGATATC--AAATT--C-----AATGA---TGC-A----AA-A-------TAC-ATTACGA-TATT-G-TCCATAAAA--CTTTGAAGGATTTTCATAA---AA-----T--------T---TT---TTA--------ACCCGATAAATCACCTTCC--ATAAATA-TTATCATATAAT-TGACTTAATT-TTATACA-ACTTAGTTTC-TCTCTCCCCC-TCTTTGAATTAGAAGACAATAAGACCATAATCAAATTCATTTAACTAAGAATTTACGCCAACAACTGTGAAGGAGAAATTTGCAAATAAATGCGTTTAAGGTGCAC------TACCTAATTTGAAGCATCTGTCTCTCATAAATAATGCAACT-TTTTTCTAA---T--ACGTTTCTTGTATATGCCT-C
gi|4 : aaggcaaaaataaaaaaaaatgaataA-TATT-A-CCCCTAAAA--CTTAGAA---TTTTTAAAATTAAA-----T--------T---CT---GAA--------CCCCGA-AAATCATCTTCC--ATAAATA-TAATCACATTATGCGACTTAATT-TTATACA-ACTTAATTTT-TCCCTCACCCGCCTTTGAATAAGAAGAAAATAAGACCAAAATGAAATTGATTTAACGAAGAATTTACGCCCACATCTATGAAAGAGAAATTTGCAAATAAATGTGTTTAGAGTGCAC------TGCCTAATTTGAAGCGTTTGTCTCTCATAAATAATGCAACTATTTTTCTAA---T--ACG-CTCCTGTATATGCT--------------------------TATTAA--ATTTTACACACATGTTCAAAACTTGCTGTGTA--AA--CGGGCCT-T-TATACCGTTTAGGTG-CGTAA
gi|5 : tAAGAACGCGTGCGT-A-GGAG---TG-G-AAGGAAACTTTCT----TATT-ATAT------TAGG-AA-T---------TTGAGTGTGAAATATATTTAATATCG-A-GATTATCAACAG--TGAAATT--TCCG-C-A-TAGCT--TTAGAAAC-AAGGTTCCAAAT-T-AA--TTTA---TTTAAG-A-TGTTAACGACT-T--ATCAAGAGTCG-A-G-------AT-ATACAAAGTA-TATGT--AA-TAAGATC--AAATT--C-----ATTTA---TGA-A----AA-A-------TAC--TTAT---TATT-G-ag
gi|6 : aaaggcaaaaaaggggggggggagggggataAAGAACG-GTGCGT-A-GGAGAATTG-G-TAAGGAACTTCTT----GATT-AATT------TAGG-AA-T---------TTGAGTGTGAACTATATTTTATATCA-G-AGATATCAACAGGATGAAATTC-TCCG-C-A-TAGCT--TT-GAACCTAAGGTT-CAAAT-TAAA--TTTATATTCTAAGCA-TGTTAAC-ACTCT--ATCAAGAGTCG-A-G-------AT-ATATACAATAGTATGT--AA--AA------ATATT--C-----AATAT---TGACA----AA-A-------T-C-AT
gi|7 : aaaaagggggggagggggataAAGAACGCGTGCGTGA-GGAGA--TG-GTAAG--AACTTCTT----GATT-AATT------TAGGGAA-T---------TTGAGTGTGAAATATATTT-ATATCA-GAGATTATCAACAGA-TGACATT--TCCG---A-TAGCT--TT---GACTAAGGTT-CAAAT-T-AA--TTTATATTCTAAGCATTGTTAA--ACTCT--ATCAAG-GTCGCA-G-------ATAATATAAA-TA-TATG---AATAAA---T--A-ATT--C-----AATAT---TGA-
gi|8 : gcaaaaaagggggggagggggataA-CATGT--AATTAAT-TT--ATATT--CGGACGAACGAAG-TGA-AGGAGAATA-------TAA-ATTAAAA-TATT-G-CCGATAAAA--CTTAGAAAGATTTTCATAA---AA-----TAATGATAATGAACTAATGAA--------CCTCGA-AAATCACCTTCC--TTAAATA-TTGTTATATGATGTGACATAATC-TTATACA-ACTTAATTTC-TCCCTCGCCCCTCTTTGAATTAGAAGAAAATGAGACCATAATCAccaaa
gi|9 : GT--AATTAA--TT--TTATCGAC-----AACGAAAGTGA-A----GG-AGAACTATTAA-ATTAAAA-TATTTG-CCGATAAAAATCTTAAAAA---TTTTATAA---AAAATGATA-------T---AT---GAAACTAATAACCTCGA-AA-TCACTTTCCTGATAATTA-TTTTTATGTGAT-TGACATAACTCTTA-ACAGACTTAATTTCTTCCCTCGCCC-TCTTTGAATT-GAATGAAATAAGACCAATATCAta
Alignments
lowQualScore : 111 1111111 111111111 111 1 111111111 111111 11111111 111 111111111 22222222222222222222222222222222222 1 222222 111 3333333333 111 11 22222222
lowQualScore : 4 4 222 4 4 8888 4 1 4444444 4 4 666666666 0 0 444 0 99 99 4 4 4 888 7 1 8 3 4 8 888 555 0 4 11 9999 1 4 999999999 4 1 4 0 88 2 555555 1 22222222 0 222 4 9999 777777777 555 0 0 4 4 4 1 66 0 0 44 0 888 77777777777777777777777777777777777 5 0 66 5 22 3 6 6 6 6 2 0 3 4 333333 0 0 6 000 77 5 5555555555 6 666 44 44 77777777 6 6 6
lowQualScore : . . ... . . .... . . ....... . . ......... . . ... . .. .. . . . ... . . . . . . ... ... . . .. .... . . ......... . . . . .. . ...... . ........ . ... . .... ......... ... . . . . . . .. . . .. . ... ................................... . . .. . .. . . . . . . . . . ...... . . . ... .. . .......... . ... .. .. ........ . . .
lowQualScore : 4 4 222 4 4 5555 0 4 9999999 0 0 000000000 8 9 666 8 55 55 0 0 0 111 3 8 9 9 4 9 000 666 0 4 22 3333 1 4 000000000 4 9 0 7 66 1 777777 1 00000000 7 555 0 4444 000000000 222 9 2 4 4 4 0 99 4 1 55 2 888 44444444444444444444444444444444444 0 4 99 7 00 3 7 7 7 7 2 8 5 2 000000 8 8 0 000 99 7 5555555555 7 888 55 22 33333333 7 7 7
consensus : AAGAACGCGTGCGT-A-GGAG---TG-G-AAGGAAACTTTCT----TATC-ACAT------TAGG-AA-T---------TTGATTGTGAAATATATTTAATGTCA-G-GATTATCAACAG--TGAAATT--TCCG-C-A-TAGCT--TTAGAAAC-AAGGTTCCAAAC-T-AA--TTTA---TTTAAG-A-TGTTAACGACT-T--ATCAAGAGGCG-A-G-------AT-ATACAAAGTA-CATGT--AATTAAGATT--ATATT--C-----AATGA---TGA-A----AA-A-------TAC-ATTACAA-TATT-G-CCCNTAAAA--CTTAGAAAGATTTTCATAA---AA-----T--------T---CT---GAA--------CCCCGA-AAATCACCTTCC--ATAAATA-TTATCATATNATGTGACTTAATT-TTATACA-ACTTAATTTC-TCCCTCGCCCGTCTTTGAATTAGAAGAAAATAAGACCATAATCAAATTGATTTAACGAAGAATTTACGCCAACATCTATGAACGAGAAATTTGCAAATAAATGCGTTTAGAGTGCAC------TACCTAATTTGAAGCGTTTGTCTCTCATAAATAATGCAACTATTTTTCTAA---T--ACGTTTCTTGTATATGCCT-CC---------GTA-TATGCCTAGTATTAGATATTTTACACACATGTTCANAACTTGCTGTGTA-TAAACCGGGCCT-T-TATACCGTTTAGGTG-CGTAA
Reference ( family-829 ) : AAGAACGCGTGCGT-A-GGAG---TG-G-AAGGAAACTTTCT----TATC-ACAT------TAGG-AA-T---------TTGATTGTGAAATATATTTAATGTCA-G-GATTATCAACAG--TGAAATT--TCCG-C-A-TAGCT--TTAGAAAC-AAGGTTCCAAAC-T-AA--TTTA---TTTAAG-A-TGTTAACGACT-T--ATCAAGAGGCG-A-G-------AT-ATACAAAGTA-CATGT--AATTAAGATT--ATATT--C-----AATGA---TGA-A----AA-A-------TAC-ATTACAA-TATT-G-CCCNTAAAA--CTTAGAAAGATTTTCATAA---AA-----T--------T---CT---GAA--------CCCCGA-AAATCACCTTCC--ATAAATA-TTATCATATNATGTGACTTAATT-TTATACA-ACTTAATTTC-TCCCTCGCCCGTCTTTGAATTAGAAGAAAATAAGACCATAATCAAATTGATTTAACGAAGAATTTACGCCAACATCTATGAACGAGAAATTTGCAAATAAATGCGTTTAGAGTGCAC------TACCTAATTTGAAGCGTTTGTCTCTCATAAATAATGCAACTATTTTTCTAA---T--ACGTTTCTTGTATATGCCT-CC---------GTA-TATGCCTAGTATTAGATATTTTACACACATGTTCANAACTTGCTGTGTA-TAAACCGGGCCT-T-TATACCGTTTAGGTG-CGTAA
gi|1 : AAGTTTCT----TATC-ATAT------TAGG-AA-TATTAGGAATTTGATTGTGAAATATATTTAATGTCA-G-GATTATAAACAG--TGAATTT--TTCG-C-A-TATCTAGTTAGAAAT-AAGGTTCCAAAT-T-A------A---TTTA-----T-TTAA-GA---T--GTCAA----CG-A-C-------TT-AT-CAAGAGG-CG----------AGAT---ATAC---------------------A----AA-G-------TAC-AT-GTAA-TATT-G-CCCCTAAAA--CTTAGAAAGATTTTCACAA---AA-----T--------T---TT---GAA--------TCTCGA-AAATCACCTTCC--ATAAATA-T-----------GTGACTTAACT-GTATACA-ACTTAATTTT-TCCCTTACCCGTTTTTTAATTAGAAGAAAACAAGACTATAATCAAATTGATTTGACAAAGAATTTACGCCAACATCTATGAACGAGAAATTTGCAAATAAATGTGTCTAGAGTCCACTACATGTACCTAATTTGAAGCGTTTA-ATCTCATAAATGACAAAATTATTTTTCTAA---T--ACGTTTGTTGTATATGCCT-CCA--------GTA-TATGCC---TATTAAATATTTTAC-C-CATATTCAAAACTTGCTGTGT----AATCGGGCCT-T-TATACCGTTTAGGTG-CGTAA
gi|10 : aaggctaaaatgacaaaaaaagaaaagaaaaaaaaaacccgcttgcgtTCTCTGAACGAGAAATTTGCAAATAAATGCGTTTTGAGTGCAC------TACCTAATTTGAAGCGTTTGTCTCTCATAAATAATGCAACTATTTTTCAAA---T--ACGTTTTTTGTATATGCCTCCC---------ATA-TATGCCTAGTATTAGATATTTTACACACATGTTCATAACTTGCTGTGTA--AA--CGGGCCT-T-TATACCGTTTAGGTG-CGTAAa
gi|11 : AAGAACACGTGCAA-A-AGAG---TGAG-AAGGAAACTTTCTCAGTTATC-ATAT------TAAG-AA-T---------TTGATTGTGACATACA--AAATGTCA-G-GATT--------------ATT--TTCG-C-A-TAGCT--TC-----C-A-------AAAC-T-A------A---TTTAAG-A-TGATAACGACT-C--ATCAAGAGGCA-ACGGATACATAT-ATACAAATTA-CATGT--ATTTag
gi|12 : atagaaaGTGTGT-A-AGAG---TG-G-AACGAAACTT-CT----TATC-ACAT-------AGG-AA-T---------TTGATTGTTGAGTATATTTACTCTCAGG-GATTATCAACAG--TGAAGTCTGTCCGCC-ATTAGCT--TTAGAAAC-AAATTTCCAAACTT-AA--TTTA---Tc
gi|13 : aaatgacaaaaagggataaaggagaaaaaaaattccgCGTGTGT-ATAGAG---TG-G-AACGAA-CTTTCT----TATCTACA-------TAGG-AATT---------TTGATTGTGAAGT-TTTTTAATGTCA-G-GATT---AATAG--GTAGATG--TCCG-CAA-TAGC---TTAG-AAC-AAAGTTCCAAAC-TAAA--TTTA---T
gi|14 : aaaggctacaatacaaaaagggtaaggcaaaaaatccG-A-TGTTAGCGACT-T---TCAAGAAGCA-A---------AC-ATACAAAGTA-CAGCTTAAATTAAGATT--ATATT--C-----AATGA---TGA-A----AA-A-------TGCAATCACAACTATT-G-CCCGTAAAA--CTTAG-AAGATTTTCATAA---AA-----T--------T---CT---GAA---------CCCGA-AAATCACC-TCC--ATGA
gi|15 : -TGTTAGCGACT-CTAATCAAGAGGCA-A-A-------AC-ATACAAAGTA-CAGCTA-AATTAAGATTAAATATTC-C-----AATGA---CCC-A----AG-------------ATCACA---ATT-GCCCCTTAAAA--CTT------GTTCT----A---AA-----T--------T---CT---GAA----------CCGA-ATAT-ACCTTCC--AT-GATGTTTATCATA
gi|16 : AAAACCGCGTGCGT-A-AGAG---TG-A-AAGGAAACATTCT----CATT-ACAT------AGGG-AA-T---------TCGATTGTTGAATATATTCAATGTAA-T-GATTATCAACAG--TGAAATT--CCCG-C-A-TAGCc
gi|17 : acaaaacaaaaactacagcaacaaaaccaaattTTTTC-AA---TTTACGTTTCTTGTATATGCCT-CC---------ATA-TATGCCTAGTATTAG--ATTCTACACACATGTTTCTAACTTGC---GTG-TAAAC--GGCCTAT-TATACCG-TTATGTGACGTAA
gi|18 : taTTTTCCAAATTT--ACGTTTCTTGTATATGCCT-CC---------ATATTATGCCTAGTATTAGA---TTTACACACATGTTC-TAACTTGCTGTG---TAAAC--GGCCT-TATATACCGTTATGGTG-CGa
gi|2 : AAAAATGTGTGCGT-A-GGAG---AG-G-AAGGAAATTTTCT----TATC-ATAT-------AGG-AA-T---------TTAATTGTGA---------------------TTATCAACAG--TGAAATT--TAAG-C-A-TAGCA--TTAGAAAC-AAGGTTCCAAAC-T-AA--TTTA---TTTAAG-A-TGATAACAACT-T--ATCAAGAGGCG-A-G-------CC-ATACAAAGTA-CATGT--AATTAAGATT--ATATT--C-----AATTA---TGA-A----AA-A-------TGC-ATTACAA-TATT-G-CCCCTAAAA--CTTAGAAAGAATTTCATAA---AA-----T--------T---CT---GAA--------CCCCGA-AATTCACCTCCC--ATAGATA-TTATCATATTATGTGATTTAATT-TTGTACA-ACTAAATTTC-TCCCTAACCCGTTCTTGAAACAGAAGAAAATAAAACCAT-----AATTGATTTAACAAAGCATTTACGCCAACATCTATGAACGAGAAATTTGCAAATAAATGTGTTTAGAGTCCTC------TACCTAATTTGAAGCGTTTATCTCTCATAAATAATGCTATTATTTGTCCAA---T--ACGTGTGTTGTATATGCCT-CCCGTATACTGGTA-CATGCC---TATTAAATATTTTACACACATGTTCAAAACTTGTTGTGTATTAAATCGGGCCT-T-TATAACGTTTAGGTG-CTTAAgt
gi|3 : AACGCACGCGT-A-AGAG---TG-G-AAATAAACTTTCT----TATT-ACATGTATATTAGG-AA-T---------TTGAATGTGAAATATATTTAATGTCA-G-GATTATCAACAG--TGAATTT--TCTG-C-A-TATCG--TTAGAAAC-AAAGTTCCAAAA-T-AAAATTTA---TTTAAG-A-TGTTAACGACT-T--ATCAAGAGGCA-A-G-------AT-ATACAAAGTA-CGTGT--AATTGATATC--AAATT--C-----AATGA---TGC-A----AA-A-------TAC-ATTACGA-TATT-G-TCCATAAAA--CTTTGAAGGATTTTCATAA---AA-----T--------T---TT---TTA--------ACCCGATAAATCACCTTCC--ATAAATA-TTATCATATAAT-TGACTTAATT-TTATACA-ACTTAGTTTC-TCTCTCCCCC-TCTTTGAATTAGAAGACAATAAGACCATAATCAAATTCATTTAACTAAGAATTTACGCCAACAACTGTGAAGGAGAAATTTGCAAATAAATGCGTTTAAGGTGCAC------TACCTAATTTGAAGCATCTGTCTCTCATAAATAATGCAACT-TTTTTCTAA---T--ACGTTTCTTGTATATGCCT-C
gi|4 : aaggcaaaaataaaaaaaaatgaataA-TATT-A-CCCCTAAAA--CTTAGAA---TTTTTAAAATTAAA-----T--------T---CT---GAA--------CCCCGA-AAATCATCTTCC--ATAAATA-TAATCACATTATGCGACTTAATT-TTATACA-ACTTAATTTT-TCCCTCACCCGCCTTTGAATAAGAAGAAAATAAGACCAAAATGAAATTGATTTAACGAAGAATTTACGCCCACATCTATGAAAGAGAAATTTGCAAATAAATGTGTTTAGAGTGCAC------TGCCTAATTTGAAGCGTTTGTCTCTCATAAATAATGCAACTATTTTTCTAA---T--ACG-CTCCTGTATATGCT--------------------------TATTAA--ATTTTACACACATGTTCAAAACTTGCTGTGTA--AA--CGGGCCT-T-TATACCGTTTAGGTG-CGTAA
gi|5 : tAAGAACGCGTGCGT-A-GGAG---TG-G-AAGGAAACTTTCT----TATT-ATAT------TAGG-AA-T---------TTGAGTGTGAAATATATTTAATATCG-A-GATTATCAACAG--TGAAATT--TCCG-C-A-TAGCT--TTAGAAAC-AAGGTTCCAAAT-T-AA--TTTA---TTTAAG-A-TGTTAACGACT-T--ATCAAGAGTCG-A-G-------AT-ATACAAAGTA-TATGT--AA-TAAGATC--AAATT--C-----ATTTA---TGA-A----AA-A-------TAC--TTAT---TATT-G-ag
gi|6 : aaaggcaaaaaaggggggggggagggggataAAGAACG-GTGCGT-A-GGAGAATTG-G-TAAGGAACTTCTT----GATT-AATT------TAGG-AA-T---------TTGAGTGTGAACTATATTTTATATCA-G-AGATATCAACAGGATGAAATTC-TCCG-C-A-TAGCT--TT-GAACCTAAGGTT-CAAAT-TAAA--TTTATATTCTAAGCA-TGTTAAC-ACTCT--ATCAAGAGTCG-A-G-------AT-ATATACAATAGTATGT--AA--AA------ATATT--C-----AATAT---TGACA----AA-A-------T-C-AT
gi|7 : aaaaagggggggagggggataAAGAACGCGTGCGTGA-GGAGA--TG-GTAAG--AACTTCTT----GATT-AATT------TAGGGAA-T---------TTGAGTGTGAAATATATTT-ATATCA-GAGATTATCAACAGA-TGACATT--TCCG---A-TAGCT--TT---GACTAAGGTT-CAAAT-T-AA--TTTATATTCTAAGCATTGTTAA--ACTCT--ATCAAG-GTCGCA-G-------ATAATATAAA-TA-TATG---AATAAA---T--A-ATT--C-----AATAT---TGA-
gi|8 : gcaaaaaagggggggagggggataA-CATGT--AATTAAT-TT--ATATT--CGGACGAACGAAG-TGA-AGGAGAATA-------TAA-ATTAAAA-TATT-G-CCGATAAAA--CTTAGAAAGATTTTCATAA---AA-----TAATGATAATGAACTAATGAA--------CCTCGA-AAATCACCTTCC--TTAAATA-TTGTTATATGATGTGACATAATC-TTATACA-ACTTAATTTC-TCCCTCGCCCCTCTTTGAATTAGAAGAAAATGAGACCATAATCAccaaa
gi|9 : GT--AATTAA--TT--TTATCGAC-----AACGAAAGTGA-A----GG-AGAACTATTAA-ATTAAAA-TATTTG-CCGATAAAAATCTTAAAAA---TTTTATAA---AAAATGATA-------T---AT---GAAACTAATAACCTCGA-AA-TCACTTTCCTGATAATTA-TTTTTATGTGAT-TGACATAACTCTTA-ACAGACTTAATTTCTTCCCTCGCCC-TCTTTGAATT-GAATGAAATAAGACCAATATCAta
blockSeqs : G T AAT . T CAGT T T GTATATT G T . GG GA TG C A T T A A T C T A AAA TAT C T CG CTA G C CGGATACAT A T G TA T GATTAA T CGGACG AAG C GGAG AGAACTAT GCA C T C G AT AG TTA TAATGATAATGAACTAATGAAC T TG T TA T G C G T A G A A . A ATT TT C CGTATACTGG T TAG AT AT ATTAAATC A A A
blockSeqs : . . A . . . . C T . . . GA A C . . . T A A T C . A A TAT C . CG CT G . A . G . A T GATT T GAC AG . . TA GC . . . T . AG . AATGATATATGAAACTAATAAC . . . TA A G . . . C G A T . C . . . A . TAG AT CT GTAAAC . . .
blockSeqs : . . . . . . . C T . . . G . . . . . A A A . C . . A . . . CG CT G . G . G . . T GATT T CC . . . A AC . . . C . GG . TTCTGAAC . . . TA T G . . . A C A G . C . . . A . TAG A AA TAAAC . . .
blockSeqs : . . . . . . . C A . . . G . . . . . G A A . C . . A . . . CA C G . G . G . . T TATC A C . . . A AC . . . A . AG . TTTTTTAA . . . AA G . . . . G . T . T . . . A . . . AA AAAC . . .
blockSeqs : . . . . . . . T T . . . T . . . . . T A A . C . . A . . . CG T G . G . G . . T GATC A C . . . A AA . . . C . A . TTCTGAAC . . . TG G . . . . G . . T . . . . . . . T AAAC . . .
blockSeqs : . . . . . . . C T . . . G . . . . . T . . . . . . A . . . CG T T . G . G . . T TTT T C . . . A AA . . . A . . . TTCTGAA . . . TT . . . .
blockSeqs : . . . . . . . T T . . . A . . . . . T . . . . . . A . . . C T T . G . A . . T TT T C . . . A C . . . A . . . TTCTGAA . .
blockSeqs : . . . . . . . A . . . . G . . . . . . . . . . . . . . . . T T . . . . . . T T T C . . . . . . . .
blockSeqs : . . A . . . . . . . . . . . . . . . C . .
blockSeqs : . .
blockSeqCons : ********* T** A** CG GATT** C******* TA ****** A********* TAG
originalCons : AAGAACGCGTGCGT-A-GGAG---TG-G-AAGGAAACTTTCT----TATC-ACAT------TAGG-AA-T---------TTGATTGTGAAATATATTTAATGTCA-G-GATTATCAACAG--TGAAATT--TCCG-C-A-TAGCT--TTAGAAAC-AAGGTTCCAAAC-T-AA--TTTA---TTTAAG-A-TGTTAACGACT-T--ATCAAGAGGCG-A-G-------AT-ATACAAAGTA-CATGT--AATTAAGATT--ATATT--C-----AATGA---TGA-A----AA-A-------TAC-ATTACAA-TATT-G-CCCNTAAAA--CTTAGAAAGATTTTCATAA---AA-----T--------T---CT---GAA--------CCCCGA-AAATCACCTTCC--ATAAATA-TTATCATATNATGTGACTTAATT-TTATACA-ACTTAATTTC-TCCCTCGCCCGTCTTTGAATTAGAAGAAAATAAGACCATAATCAAATTGATTTAACGAAGAATTTACGCCAACATCTATGAACGAGAAATTTGCAAATAAATGCGTTTAGAGTGCAC------TACCTAATTTGAAGCGTTTGTCTCTCATAAATAATGCAACTATTTTTCTAA---T--ACGTTTCTTGTATATGCCT-CC---------GTA-TATGCCTAGTATTAGATATTTTACACACATGTTCANAACTTGCTGTGTA-TAAACCGGGCCT-T-TATACCGTTTAGGTG-CGTAA
finalCons : AAGAACGCGTGCGT-A-GGAG---TG-G-AAGGAAACTTTCT----TATC-ACAT------TAGG-AA-T---------TTGATTGTGAAATATATTTAATGTCA-G-GATTATCAACAG--TGAAATT--TCCG-C-A-TAGCT--TTAGAAAC-AAGGTTCCAAAC-T-AA--TTTA---TTTAAG-A-TGTTAACGACT-T--ATCAAGAGGCG-A-G-------AT-ATACAAAGTA-CATGT--AATTAAGATT--ATATTC-------AATGA---TGA-A----AA-A-------TAC-ATTACAA-TATT-G-CCCNTAAAA--CTTAGAAAGATTTTCATAA---AA-----T--------T---CT---GAA--------CCCCGA-AAATCACCTTCC--ATAAATA-TTATCATATNATGTGACTTAATT-TTATACA-ACTTAATTTC-TCCCTCGCCCGTCTTTGAATTAGAAGAAAATAAGACCATAATCAAATTGATTTAACGAAGAATTTACGCCAACATCTATGAACGAGAAATTTGCAAATAAATGCGTTTAGAGTGCAC------TACCTAATTTGAAGCGTTTGTCTCTCATAAATAATGCAACTATTTTTCTAA---T--ACGTTTCTTGTATATGCCT-CCA---------TA-TATGCCTAGTATTAGATATTTTACACACATGTTCANAACTTGCTGTGTA-TAAACCGGGCCT-T-TATACCGTTTAGGTG-CGTAA
Alignments
lowQualScore : 111 1111111 111111111 111 1 111111111 111111 11111111 111 111111111 22222222222222222222222222222222222 1 222222 111 33333333333 111 11 22222222
lowQualScore : 4 4 222 4 4 8888 4 1 4444444 4 4 666666666 0 0 444 0 99 99 4 4 4 888 7 1 8 3 4 8 888 555 0 4 11 9999 1 4 999999999 4 1 4 0 88 2 555555 1 22222222 0 222 4 9999 777777777 555 0 0 4 4 4 1 66 0 0 44 0 888 77777777777777777777777777777777777 5 0 66 5 22 3 6 6 6 6 2 0 3 4 333333 0 0 6 000 77 5 00000000000 6 666 44 44 77777777 6 6 6
lowQualScore : . . ... . . .... . . ....... . . ......... . . ... . .. .. . . . ... . . . . . . ... ... . . .. .... . . ......... . . . . .. . ...... . ........ . ... . .... ......... ... . . . . . . .. . . .. . ... ................................... . . .. . .. . . . . . . . . . ...... . . . ... .. . ........... . ... .. .. ........ . . .
lowQualScore : 4 4 222 4 4 5555 0 4 9999999 0 0 000000000 8 9 666 8 55 55 0 0 0 111 3 8 9 9 4 9 000 666 0 4 22 3333 1 4 000000000 4 9 0 7 66 1 777777 1 00000000 7 555 0 4444 000000000 222 9 2 4 4 4 0 99 4 1 55 2 888 44444444444444444444444444444444444 0 4 99 7 00 3 7 7 7 7 2 8 5 2 000000 8 8 0 000 99 7 88888888888 7 888 55 22 33333333 7 7 7
consensus : AAGAACGCGTGCGT-A-GGAG---TG-G-AAGGAAACTTTCT----TATC-ACAT------TAGG-AA-T---------TTGATTGTGAAATATATTTAATGTCA-G-GATTATCAACAG--TGAAATT--TCCG-C-A-TAGCT--TTAGAAAC-AAGGTTCCAAAC-T-AA--TTTA---TTTAAG-A-TGTTAACGACT-T--ATCAAGAGGCG-A-G-------AT-ATACAAAGTA-CATGT--AATTAAGATT--ATATT--C-----AATGA---TGA-A----AA-A-------TAC-ATTACAA-TATT-G-CCCNTAAAA--CTTAGAAAGATTTTCATAA---AA-----T--------T---CT---GAA--------CCCCGA-AAATCACCTTCC--ATAAATA-TTATCATATNATGTGACTTAATT-TTATACA-ACTTAATTTC-TCCCTCGCCCGTCTTTGAATTAGAAGAAAATAAGACCATAATCAAATTGATTTAACGAAGAATTTACGCCAACATCTATGAACGAGAAATTTGCAAATAAATGCGTTTAGAGTGCAC------TACCTAATTTGAAGCGTTTGTCTCTCATAAATAATGCAACTATTTTTCTAA---T--ACGTTTCTTGTATATGCCT-CC---------A-TA-TATGCCTAGTATTAGATATTTTACACACATGTTCANAACTTGCTGTGTA-TAAACCGGGCCT-T-TATACCGTTTAGGTG-CGTAA
Reference ( family-829 ) : AAGAACGCGTGCGT-A-GGAG---TG-G-AAGGAAACTTTCT----TATC-ACAT------TAGG-AA-T---------TTGATTGTGAAATATATTTAATGTCA-G-GATTATCAACAG--TGAAATT--TCCG-C-A-TAGCT--TTAGAAAC-AAGGTTCCAAAC-T-AA--TTTA---TTTAAG-A-TGTTAACGACT-T--ATCAAGAGGCG-A-G-------AT-ATACAAAGTA-CATGT--AATTAAGATT--ATATT--C-----AATGA---TGA-A----AA-A-------TAC-ATTACAA-TATT-G-CCCNTAAAA--CTTAGAAAGATTTTCATAA---AA-----T--------T---CT---GAA--------CCCCGA-AAATCACCTTCC--ATAAATA-TTATCATATNATGTGACTTAATT-TTATACA-ACTTAATTTC-TCCCTCGCCCGTCTTTGAATTAGAAGAAAATAAGACCATAATCAAATTGATTTAACGAAGAATTTACGCCAACATCTATGAACGAGAAATTTGCAAATAAATGCGTTTAGAGTGCAC------TACCTAATTTGAAGCGTTTGTCTCTCATAAATAATGCAACTATTTTTCTAA---T--ACGTTTCTTGTATATGCCT-CC---------A-TA-TATGCCTAGTATTAGATATTTTACACACATGTTCANAACTTGCTGTGTA-TAAACCGGGCCT-T-TATACCGTTTAGGTG-CGTAA
gi|1 : AAGTTTCT----TATC-ATAT------TAGG-AA-TATTAGGAATTTGATTGTGAAATATATTTAATGTCA-G-GATTATAAACAG--TGAATTT--TTCG-C-A-TATCTAGTTAGAAAT-AAGGTTCCAAAT-T-A------A---TTTA-----T-TTAA-GA---T--GTCAA----CG-A-C-------TT-AT-CAAGAGG-CG----------AGAT---ATAC---------------------A----AA-G-------TAC-AT-GTAA-TATT-G-CCCCTAAAA--CTTAGAAAGATTTTCACAA---AA-----T--------T---TT---GAA--------TCTCGA-AAATCACCTTCC--ATAAATA-T-----------GTGACTTAACT-GTATACA-ACTTAATTTT-TCCCTTACCCGTTTTTTAATTAGAAGAAAACAAGACTATAATCAAATTGATTTGACAAAGAATTTACGCCAACATCTATGAACGAGAAATTTGCAAATAAATGTGTCTAGAGTCCACTACATGTACCTAATTTGAAGCGTTTA-ATCTCATAAATGACAAAATTATTTTTCTAA---T--ACGTTTGTTGTATATGCCT-CC---------AGTA-TATGCC---TATTAAATATTTTAC-C-CATATTCAAAACTTGCTGTGT----AATCGGGCCT-T-TATACCGTTTAGGTG-CGTAA
gi|10 : aaggctaaaatgacaaaaaaagaaaagaaaaaaaaaacccgcttgcgtTCTCTGAACGAGAAATTTGCAAATAAATGCGTTTTGAGTGCAC------TACCTAATTTGAAGCGTTTGTCTCTCATAAATAATGCAACTATTTTTCAAA---T--ACGTTTTTTGTATATGCCTCCC---------A-TA-TATGCCTAGTATTAGATATTTTACACACATGTTCATAACTTGCTGTGTA--AA--CGGGCCT-T-TATACCGTTTAGGTG-CGTAAa
gi|11 : AAGAACACGTGCAA-A-AGAG---TGAG-AAGGAAACTTTCTCAGTTATC-ATAT------TAAG-AA-T---------TTGATTGTGACATACA--AAATGTCA-G-GATT--------------ATT--TTCG-C-A-TAGCT--TC-----C-A-------AAAC-T-A------A---TTTAAG-A-TGATAACGACT-C--ATCAAGAGGCA-ACGGATACATAT-ATACAAATTA-CATGT--ATTTag
gi|12 : atagaaaGTGTGT-A-AGAG---TG-G-AACGAAACTT-CT----TATC-ACAT-------AGG-AA-T---------TTGATTGTTGAGTATATTTACTCTCAGG-GATTATCAACAG--TGAAGTCTGTCCGCC-ATTAGCT--TTAGAAAC-AAATTTCCAAACTT-AA--TTTA---Tc
gi|13 : aaatgacaaaaagggataaaggagaaaaaaaattccgCGTGTGT-ATAGAG---TG-G-AACGAA-CTTTCT----TATCTACA-------TAGG-AATT---------TTGATTGTGAAGT-TTTTTAATGTCA-G-GATT---AATAG--GTAGATG--TCCG-CAA-TAGC---TTAG-AAC-AAAGTTCCAAAC-TAAA--TTTA---T
gi|14 : aaaggctacaatacaaaaagggtaaggcaaaaaatccG-A-TGTTAGCGACT-T---TCAAGAAGCA-A---------AC-ATACAAAGTA-CAGCTTAAATTAAGATT--ATATT--C-----AATGA---TGA-A----AA-A-------TGCAATCACAACTATT-G-CCCGTAAAA--CTTAG-AAGATTTTCATAA---AA-----T--------T---CT---GAA---------CCCGA-AAATCACC-TCC--ATGA
gi|15 : -TGTTAGCGACT-CTAATCAAGAGGCA-A-A-------AC-ATACAAAGTA-CAGCTA-AATTAAGATTAAATATTC-C-----AATGA---CCC-A----AG-------------ATCACA---ATT-GCCCCTTAAAA--CTT------GTTCT----A---AA-----T--------T---CT---GAA----------CCGA-ATAT-ACCTTCC--AT-GATGTTTATCATA
gi|16 : AAAACCGCGTGCGT-A-AGAG---TG-A-AAGGAAACATTCT----CATT-ACAT------AGGG-AA-T---------TCGATTGTTGAATATATTCAATGTAA-T-GATTATCAACAG--TGAAATT--CCCG-C-A-TAGCc
gi|17 : acaaaacaaaaactacagcaacaaaaccaaattTTTTC-AA---TTTACGTTTCTTGTATATGCCT-CC---------A-TA-TATGCCTAGTATTAG--ATTCTACACACATGTTTCTAACTTGC---GTG-TAAAC--GGCCTAT-TATACCG-TTATGTGACGTAA
gi|18 : taTTTTCCAAATTT--ACGTTTCTTGTATATGCCT-CC---------A-TATTATGCCTAGTATTAGA---TTTACACACATGTTC-TAACTTGCTGTG---TAAAC--GGCCT-TATATACCGTTATGGTG-CGa
gi|2 : AAAAATGTGTGCGT-A-GGAG---AG-G-AAGGAAATTTTCT----TATC-ATAT-------AGG-AA-T---------TTAATTGTGA---------------------TTATCAACAG--TGAAATT--TAAG-C-A-TAGCA--TTAGAAAC-AAGGTTCCAAAC-T-AA--TTTA---TTTAAG-A-TGATAACAACT-T--ATCAAGAGGCG-A-G-------CC-ATACAAAGTA-CATGT--AATTAAGATT--ATATT--C-----AATTA---TGA-A----AA-A-------TGC-ATTACAA-TATT-G-CCCCTAAAA--CTTAGAAAGAATTTCATAA---AA-----T--------T---CT---GAA--------CCCCGA-AATTCACCTCCC--ATAGATA-TTATCATATTATGTGATTTAATT-TTGTACA-ACTAAATTTC-TCCCTAACCCGTTCTTGAAACAGAAGAAAATAAAACCAT-----AATTGATTTAACAAAGCATTTACGCCAACATCTATGAACGAGAAATTTGCAAATAAATGTGTTTAGAGTCCTC------TACCTAATTTGAAGCGTTTATCTCTCATAAATAATGCTATTATTTGTCCAA---T--ACGTGTGTTGTATATGCCT-CCCGTATACTGG-TA-CATGCC---TATTAAATATTTTACACACATGTTCAAAACTTGTTGTGTATTAAATCGGGCCT-T-TATAACGTTTAGGTG-CTTAAgt
gi|3 : AACGCACGCGT-A-AGAG---TG-G-AAATAAACTTTCT----TATT-ACATGTATATTAGG-AA-T---------TTGAATGTGAAATATATTTAATGTCA-G-GATTATCAACAG--TGAATTT--TCTG-C-A-TATCG--TTAGAAAC-AAAGTTCCAAAA-T-AAAATTTA---TTTAAG-A-TGTTAACGACT-T--ATCAAGAGGCA-A-G-------AT-ATACAAAGTA-CGTGT--AATTGATATC--AAATT--C-----AATGA---TGC-A----AA-A-------TAC-ATTACGA-TATT-G-TCCATAAAA--CTTTGAAGGATTTTCATAA---AA-----T--------T---TT---TTA--------ACCCGATAAATCACCTTCC--ATAAATA-TTATCATATAAT-TGACTTAATT-TTATACA-ACTTAGTTTC-TCTCTCCCCC-TCTTTGAATTAGAAGACAATAAGACCATAATCAAATTCATTTAACTAAGAATTTACGCCAACAACTGTGAAGGAGAAATTTGCAAATAAATGCGTTTAAGGTGCAC------TACCTAATTTGAAGCATCTGTCTCTCATAAATAATGCAACT-TTTTTCTAA---T--ACGTTTCTTGTATATGCCT-C
gi|4 : aaggcaaaaataaaaaaaaatgaataA-TATT-A-CCCCTAAAA--CTTAGAA---TTTTTAAAATTAAA-----T--------T---CT---GAA--------CCCCGA-AAATCATCTTCC--ATAAATA-TAATCACATTATGCGACTTAATT-TTATACA-ACTTAATTTT-TCCCTCACCCGCCTTTGAATAAGAAGAAAATAAGACCAAAATGAAATTGATTTAACGAAGAATTTACGCCCACATCTATGAAAGAGAAATTTGCAAATAAATGTGTTTAGAGTGCAC------TGCCTAATTTGAAGCGTTTGTCTCTCATAAATAATGCAACTATTTTTCTAA---T--ACG-CTCCTGTATATGCT---------------------------TATTAA--ATTTTACACACATGTTCAAAACTTGCTGTGTA--AA--CGGGCCT-T-TATACCGTTTAGGTG-CGTAA
gi|5 : tAAGAACGCGTGCGT-A-GGAG---TG-G-AAGGAAACTTTCT----TATT-ATAT------TAGG-AA-T---------TTGAGTGTGAAATATATTTAATATCG-A-GATTATCAACAG--TGAAATT--TCCG-C-A-TAGCT--TTAGAAAC-AAGGTTCCAAAT-T-AA--TTTA---TTTAAG-A-TGTTAACGACT-T--ATCAAGAGTCG-A-G-------AT-ATACAAAGTA-TATGT--AA-TAAGATC--AAATT--C-----ATTTA---TGA-A----AA-A-------TAC--TTAT---TATT-G-ag
gi|6 : aaaggcaaaaaaggggggggggagggggataAAGAACG-GTGCGT-A-GGAGAATTG-G-TAAGGAACTTCTT----GATT-AATT------TAGG-AA-T---------TTGAGTGTGAACTATATTTTATATCA-G-AGATATCAACAGGATGAAATTC-TCCG-C-A-TAGCT--TT-GAACCTAAGGTT-CAAAT-TAAA--TTTATATTCTAAGCA-TGTTAAC-ACTCT--ATCAAGAGTCG-A-G-------AT-ATATACAATAGTATGT--AA--AA------ATATT--C-----AATAT---TGACA----AA-A-------T-C-AT
gi|7 : aaaaagggggggagggggataAAGAACGCGTGCGTGA-GGAGA--TG-GTAAG--AACTTCTT----GATT-AATT------TAGGGAA-T---------TTGAGTGTGAAATATATTT-ATATCA-GAGATTATCAACAGA-TGACATT--TCCG---A-TAGCT--TT---GACTAAGGTT-CAAAT-T-AA--TTTATATTCTAAGCATTGTTAA--ACTCT--ATCAAG-GTCGCA-G-------ATAATATAAA-TA-TATG---AATAAA---T--A-ATT--C-----AATAT---TGA-
gi|8 : gcaaaaaagggggggagggggataA-CATGT--AATTAAT-TT--ATATT--CGGACGAACGAAG-TGA-AGGAGAATA-------TAA-ATTAAAA-TATT-G-CCGATAAAA--CTTAGAAAGATTTTCATAA---AA-----TAATGATAATGAACTAATGAA--------CCTCGA-AAATCACCTTCC--TTAAATA-TTGTTATATGATGTGACATAATC-TTATACA-ACTTAATTTC-TCCCTCGCCCCTCTTTGAATTAGAAGAAAATGAGACCATAATCAccaaa
gi|9 : GT--AATTAA--TT--TTATCGAC-----AACGAAAGTGA-A----GG-AGAACTATTAA-ATTAAAA-TATTTG-CCGATAAAAATCTTAAAAA---TTTTATAA---AAAATGATA-------T---AT---GAAACTAATAACCTCGA-AA-TCACTTTCCTGATAATTA-TTTTTATGTGAT-TGACATAACTCTTA-ACAGACTTAATTTCTTCCCTCGCCC-TCTTTGAATT-GAATGAAATAAGACCAATATCAta