lowQualScore : 11111111111
lowQualScore : 22 222 11111 11 99999999999999999999999999999999 3333333333333333333333 1 111 00000000000
lowQualScore : 4 666 3 3 7 666 3 00 3 666 0 3 3 888 3 222 44 33 3 3 66666 77777 6 77 3 00000 33 6666 99999 22222222222222222222222222222222 1111111111111111111111 1 5 0 333 4 777 4 4 4 00000000000
lowQualScore : . ... . . . ... . .. . ... . . . ... . ... .. .. . . ..... ..... . .. . ..... .. .... ..... ................................ ...................... . . . ... . ... . . . ...........
lowQualScore : 0 444 6 6 3 444 6 33 3 333 8 3 3 333 3 333 22 88 1 1 00000 77777 0 33 1 88888 44 2222 11111 22222222222222222222222222222222 1111111111111111111111 7 7 8 555 0 000 9 0 0 44444444444
consensus : AAT-TTATTTT---TAAT-CCCA-T-A---CTGAA-CACTCGGATGT-TA-C-ATGTC-AGT-ACACACAAAC-G-TATTT-ATTGT-G--AAT-ACAC-T-TC---G-T-----TCCTGGTGA--TG-C-----AAGGCAAA-TATTT-A-CTG-----AATAAAAAAA-TAAA-GCAAAAA--------A-AAAA---AAAAAAA--------TTT-CGA-CCC---CGACCCTACATTATTTTC-GAGAT-GTAATC---GGA-AAC-AC------CTACCTTTTTTTTTTTTTG
Reference ( gi|1 ) : AAT-TTATTTT---TAAT-CCCA-T-A---CTGAA-CACTCGGATGT-TA-C-ATGTC-AGT-ACACACAAAC-A-TATTT-ATTAA-G--AAT-ACAC-T-TC---G-T-----TCCTGGTAA--TG-C-----AAGGCAAA-CATTT-A-CTG-----AATAAAAAAATTAAATGCAAAAA--------A-AAAA---AAAAAAA--------TTT-CGA-TCC---CAATCCTACATTATTTTC-AAGAT-GTAATC---GAA-AAC-ACTTATAACTACCTTTTTTTTTTTTTGACTTTAG
gi|2 : AAT-TTATTTTATTTAAT-CCCA-T-G---TTGAA-CACTC-AATAA-TATC-ATATC-AGT-ACACACAAAC-G-TATTT-ATTAT-G--AAT-TCAC-T-TC---G-T-----TCCTGGTGA--GG-C-----TAGGCAAATTTTTT-A-CTG-----AATAAAAAA--TAAAAGCAAAAATTTTTTTT---------AAAAAAA--------TTT-CGACCCC---CGACCCTACATTATTTTC-GAGAT-GTAATC---GGA-AAC-AC--------GCCTTTTTTCTTTCTT
gi|3 : AAT-TTATTTT---TAAT-CCCATT-A---CTGAA-CACTC-GATGT-TA---ATATCAAGT-ACAC-C-AAC-G-TATTC-ATTGT-G--AAT--CACAT-TC---G-T-----T-CTGGTGAT-TG-C-----AGG--AAA--ATTT----TG-----TATGATTATAGTGAATAAAAAAT--------A-AAAAGC-AAAAAAACATTTTTTTTT-CGA-TCC---CAACCCTAC-TTTTTTTC-GATATGGTAATC---GGA-AAC-AC--------ACCTTTTTTTTTTTTTtt
gi|10 : aAAT-TTATTTT---TAAT-CCCA-TGA---CTGAA-C-CTCGGATGT-CA-CAATGTC-AGT-ACACACAAACGG-TATTA-ATTGT-G--AAT-ACAC-TGTC---G-T-----TCCTGGTGA--TGCC-----AAGGCAAA-TTTGT-A-ACG-----AAT
gi|5 : AAT-TTACTTT---TAAT-GCAA-T-A---CTGAAACACCTCGATAT-CA-C-AT--C-AGTTACACACAAAC-A-TATTC-ATTAT-GTGAAT-ACAC-T-TC---A-T-----TCC-GGTGA--GG-C-----AAGGCAAA-TATTC-AACTG-----AATAAA------AAAT-------------------------AAAAAG------------------C---CAA-----CATTATTTT--GAGAT-GTAATCAAAGAA-AACAACTTAT-------TTTTTTTTT
gi|9 : AAT-TTGTTTT---TATTACCCA-TTA---CTGAA-CACTTG-ATGT-TA-C-ATGTC-AGT-ACACACTTAC-A-TGTAT-ATCGT-G--CAT-AAGA-T-TC---G-T-----TCCCTGTGA--TA-T-----AAGGCAAA-TATTT-A-CTG-----A
gi|8 : ttAATATTACTTT---T----CACA-T-ATACCTGAA-CACTCG-ATACATA-C-ATATC-AGT-A-ACACAA-C-A-TACTTCATTCATG--AAC-ATAA-C-TT---G-T-----CCCCGGTGA--GG-CG----AAGGCAAA-TATTT-A-CTGATAAAAATAAAAACATTAttggagggggaaaaaat
gi|4 : AT-TTAATTT---TAAT-CCCA-T-A---CTGAA-CACCCG-ATGT-TA-C-ATAT------ACACATAAAC-G-TATTT-ATTAT-G--AAT-ACAC-T-TCGGAG-TCTAGGTCCTGGTGA--TG-C-----AAGGCAGA----------TA-----AATAAAAA---------CAAAAA--------A-AAAAT--AAAAAAA--------TTTCCGA-CCCTCTCGACCCTACATTATTTTC-GATAT-GTAATC---GGA-AAC-AC--------ACTTTTTTTTTTTctttgagatgtaatcggaaacacacctaattttttt
gi|13 : AT-TTATTCT---TAAC-CCAA-T-A---CTGAA-CACTCG-ATGT-TA-C-ATGTC-AGT-ACACACAAAT-T-TATAT-ATTGT-A--TAT-ACGT-T-AC---G-T-----TCATGATGA--TG-C-----AAGGCAAA-TATTT-A-C
gi|14 : AT-TTATTTT----AAT-CCGA-T-A---C---------------T-TA-G-ATGTT-AGT-ACAC---AAC-AGTAATT--TTAT-G--AAT-TCAC-T-TC---ATT-----TTCTGGTGAATTG-C-----AGAGCAAA-gg
gi|7 : ttgtgT-TTACTTT---TAAT-CACA-T-A---CTGAA-CACTTCGATAT-CA-T-A-ATC-AGT-ACACACAAAC-A-TATTC-TTT---G--AATCACAC-T-TC-----T-----TCCCGGTGA--GG-CCATTGAAGGCAAA-TATTTAA-CTG-----AATAAAAAA--TAAAAGCAAaaatttt
gi|6 : TT---TAAC-CCAA-T-A---CTGAA-------------------TGTC-AGT-ACACACAGAT-T-TATAT-ATCGT-G--AAT-ACGT-T-AC---G-T-----TCATGGTGA--TG-C-----AAGGCAAA-TATTT-A-CTG-----AATAAcattattttttgagatgtaatcggaaacaacctatttttttt
gi|11 : GATGT-TG-C-ATGTC-AGT-ACACACAAAA-G-TTTAT-ATTGT-G--AAT-TCAT-T-TC---G-T-----TCTTGTTGA--CA-C-----AAGGCAAA-TATTT-A-ATG-----AATAAAAAAA------GCAAAAA--------ATAAAATTGAAAAAAA--------caccccccccccccattaaaaacatctttttttcgaccctacattattttcgagatgtaataggaacacagctatttttttc
gi|12 : tc-G--AAT-ACAC-T-TC---A-T-----TCCTGGTGA--TG-C-----AAGG--AG-CA--------A-----AAAAAAAAAATT-------------------------------------------TTT-----TTT---CGACCCTACATTATTTTC-AAGAT-GTAATC---AAA-AAC-AC-----ACT-TATTTTTTTTTTTTTG
gi|15 : tAAAAGTTAAA-AAAAAAA--------A-AAAA---AAAAAAA--------ATT-CGA-CCC---CGA-CCTAC---ATTTTC--ATAT-GTAATC---GAACCAC-ACCTA
gi|6 : aaat---AAAAACA--------TCT-TTT-TTT---CGACCCTACATTATTTTC-GAGAT-GTAATA---G-G-AAC-AC----AGCTATTTTTTTatttgtt
gi|7 : tttaacccaatactgaatgtcagtacacacagatttatatatcgtgaatacgttacgttcatggtgatgcaaggcaaatatttactgaataacaccccccccccccattACATTATTTTTTGAGAT-GTAATC---GGA-AAC-A---------ACCTATTTTTTTTc
gi|8 : tttacttttaatcacatactgaacacttcgatatcataatcagtacacacaaacatattctttgaatcacacttcttcccggtgaggccattgaaggcaaatatttaactgaataaaaaataaaagcaACATTACTTT--GAGAT-GTAATC---GGA-AAC-AC----ACCTAATTTTTTT
gi|16 : aatattacttttcacatatacctgaacactcgatacatacatatcagtaacacaacatacttcattcatgaacataacttgtccccggtgaggcgaaggcaaatatttactgataaaaataaaaCATTATTTTC-GATAT-GTAATC---GGA-AAC-AC----AACT---TTTTT
Alignments
lowQualScore : 1 11 11111 11111 11111111 888888888888888888888888888888 33333333333333333333 444444444
lowQualScore : 3 555 3 0 555 3 66 3 555 3 3 6 3 77 22 2 2 00000 555 5555 2 00000 2 11111111 3 6 111111111111111111111111111111 22222222222222222222 2 44 3 666 3 3 222222222 55 55
lowQualScore : . ... . . ... . .. . ... . . . . .. .. . . ..... ... .... . ..... . ........ . . .............................. .................... . .. . ... . . ......... .. ..
lowQualScore : 6 888 3 0 888 3 88 1 111 1 1 2 1 33 99 9 9 00000 000 7777 9 00000 9 22222222 1 2 000000000000000000000000000000 22222222222222222222 9 22 6 444 6 6 111111111 55 55
consensus : AAT-TTATTTT---TAAT-CCCAT-A---CTGAA-CACTCGGATGT-TA-C-ATGTCA-GT-ACACACAAAC-GTATTT-ATT--GTGAAT-ACAC-T-TCG-----T---TCCTGGTGA--T-G-C-----AAGGCAAA-T--------ATT-TA-CTGAATAAAAAA--TAAA-GCAAAAAA-AAAA--------AAAAAAATTT------C-GA-CCC---CGACCCTACATTATTTTC-GAGATG-TAATC---GGA-A-ACAC--------ACC--T--TTTTTTTTTTTTG
Reference ( family-804 ) : AAT-TTATTTT---TAAT-CCCAT-A---CTGAA-CACTCGGATGT-TA-C-ATGTCA-GT-ACACACAAAC-GTATTT-ATT--GTGAAT-ACAC-T-TCG-----T---TCCTGGTGA--T-G-C-----AAGGCAAA-T--------ATT-TA-CTGAATAAAAAAA-TAAA-GCAAAAAA-AAAA--------AAAAAAATTT------C-GA-CCC---CGACCCTACATTATTTTC-GAGATG-TAATC---GGA-A-ACAC------CTACC--T--TTTTTTTTTTTTG
gi|1 : AAT-TTATTTT---TAAT-CCCAT-A---CTGAA-CACTCGGATGT-TA-C-ATGTCA-GT-ACACACAAAC-ATATTT-ATT--AAGAAT-ACAC-T-TCG-----T---TCCTGGTAA--T-G-C-----AAGGCAAA-C--------ATT-TA-CTGAATAAAAAAATTAAATGCAAAAAA-AAAA--------AAAAAAATTT------C-GA-TCC---CAATCCTACATTATTTTC-AAGATG-TAATC---GAA-A-ACACTTATAACTACC--T--TTTTTTTTTTTTG
gi|10 : AAT-TTATTTT---TAAT-CCCATGA---CTGAA-C-CTCGGATGT-CA-CAATGTCA-GT-ACACACAAACGGTATTA-ATT--GTGAAT-ACAC-TGTCG-----T---TCCTGGTGA--T-GCC-----AAGGCAAA-T--------TTG-TA-ACGAATactttag
gi|11 : GATGT-TG-C-ATGTCA-GT-ACACACAAAA-GTTTAT-ATT--GTGAAT-TCAT-T-TCG-----T---TCTTGTTGA--C-A-C-----AAGGCAAA-T--------ATT-TA-ATGAATAAAA-----AAA-GCAAAAAATAAAATTG-----AAAAAAA
gi|12 : tcTGAAT-ACAC-T-TCA-----T---TCCTGGTGA--T-G-C-----AAGG--------------------------------------A-GCAA------AAA--------AAAAAAATTT------T-T--TTT---CGACCCTACATTATTTTC-AAGATG-TAATC---AAA-A-ACAC--------ACTTAT--TTTTTTTTTTTTG
gi|13 : AT-TTATTCT---TAAC-CCAAT-A---CTGAA-CACTCG-ATGT-TA-C-ATGTCA-GT-ACACACAAAT-TTATAT-ATT--GTATAT-ACGT-T-ACG-----T---TCATGATGA--T-G-C-----AAGGCAAA-T--------ATT-TA-C
gi|14 : AT-TTATTTT----AAT-CCGAT-A---C---------------T-TA-G-ATGTTA-GT-ACAC---AACAGTAATT--TT--ATGAAT-TCAC-T-TCAT----T---TTCTGGTGAATT-G-C-----AGAGCAAA-gg
gi|15 : ttgtgAATAAAAGT--TAAA-AAAAAAAA-AAAA--------AAAAAAAATT------C-GA-CCC---CGA-CCTAC---ATTTTC--ATATG-TAATC---GAACC-ACAC------CTAaaatttt
gi|16 : aCATTATTTTC-GATATG-TAATC---GGA-A-ACAC--------AAC--T--TTTTTatttgtt
gi|2 : AAT-TTATTTTATTTAAT-CCCAT-G---TTGAA-CACTC-AATAA-TATC-ATATCA-GT-ACACACAAAC-GTATTT-ATT--ATGAAT-TCAC-T-TCG-----T---TCCTGGTGA--G-G-C-----TAGGCAAATT--------TTT-TA-CTGAATAAAAAAT-AAAA-GC-----A-AAAATTTTTTTTAAAAAAATTT------C-GACCCC---CGACCCTACATTATTTTC-GAGATG-TAATC---GGA-A-ACAC--------GCC--T--TTTTTCTTTCTT
gi|3 : AAT-TTATTTT---TAAT-CCCATTA---CTGAA-CACTCG-ATGT-TA---ATATCAAGT-ACAC-CAA-C-GTATTC-ATT--GTGAAT--CACAT-TCG-----T---TC-TGGTGA--TTG-C-----A-GGAAAA-TTTTGTATGATTATA-GTGAATAAAAAA--TAAA-------AA-GCAA--------AAAAACATTTTTTTTTC-GA-TCC---CAACCCTACTTT-TTTTC-GATATGGTAATC---GGA-A-ACAC--------ACC--T--TTTTTTTTTTTTtt
gi|4 : aAT-TTAATTT---TAAT-CCCAT-A---CTGAA-CACCCG-ATGT-TA-C-ATAT------ACACATAAAC-GTATTT-ATT--ATGAAT-ACAC-T-TCGGAGTCTAGGTCCTGGTGA--T-G-C-----AAGGCAGA-T--------A---------AATAAAAA---------CAAAAAA-AAAAT-------AAAAAAATTT------CCGA-CCCTCTCGACCCTACATTATTTTC-GATATG-TAATC---GGA-A-ACAC--------ACT--T--TTTTTTTTT
gi|5 : AAT-TTACTTT---TAAT-GCAAT-A---CTGAAACACCTCGATAT-CA-C-AT--CA-GTTACACACAAAC-ATATTC-ATTATGTGAAT-ACAC-T-TCA-----T---TCC-GGTGA--G-G-C-----AAGGCAAA-T--------ATT-CAACTGAATAAAA-AA-T--------------------------AAAAAG------------------------CCAACATTATTTT--GAGATG-TAATCAAAGAA-A-ACA---------ACT--T--ATTTTTTTTTT
gi|6 : TT---TAAC-CCAAT-A---CTGAA-------------------TGTCA-GT-ACACACAGAT-TTATAT-ATC--GTGAAT-ACGT-T-ACG-----T---TCATGGTGA--T-G-C-----AAGGCAAA-T--------ATT-TA-CTGAATAA
gi|6 : ---CGACCCTACATTATTTTC-GAGATG-TAATA---GGA-ACACAG------CTATT--T--TTTTcaccccccccccccattaaaaacatctttttttcgaccctacattattttcgagatgtaataggaacacagctatttttttc
gi|7 : tttaacccaatactgaatgtcagtacacacagatttatatatcgtgaatacgttacgttcatggtgatgcaaggcaaatatttactgaataacaccccccccccccattaaaaacatctttttttT-TTACTTT---TAAT-CACAT-A---CTGAA-CACTTCGATAT-CA-T-A-ATCA-GT-ACACACAAAC-ATATTC--TT---TGAATCACAC-T-TC------T---TCCCGGTGA--G-G-CCATTGAAGGCAAA-T--------ATT-TAACTGAATA------------------AA-AAAT--------AAAAGCA---------------------------ACATTATTTTTTGAGATG-TAATC---GGA-A-ACA---------ACC--T--ATTTTTTTTc
gi|8 : AATATTACTTT---T----CACAT-ATACCTGAA-CACTCG-ATACATA-C-ATATCA-GT-A-ACACAA-C-ATACTTCATTC-ATGAAC-ATAA-C-TTG-----T---CCCCGGTGA--G-G-CG----AAGGCAAA-T--------ATT-TA-CTG-ATAAAAATA--AAA-ACA
gi|8 : ACATTACTTT--GAGATG-TAATC---GGA-A-ACAC--------ACC--TAATTTTTTTttactttgagatgtaatcggaaacacacctaattttttt
gi|9 : aatattacttttcacatatacctgaacactcgatacatacatatcagtaacacaacatacttcattcatgaacataacttgtccccggtgaggcgaaggcaaatatttactgataaaaataaaaAAT-TTGTTTT---TATTACCCATTA---CTGAA-CACTTG-ATGT-TA-C-ATGTCA-GT-ACACACTTAC-ATGTAT-ATC--GTGCAT-AAGA-T-TCG-----T---TCCCTGTGA--T-A-T-----AAGGCAAA-T--------ATT-TA-CTGA
Alignments
lowQualScore : 1 11 11111 11111111 5555555555555555555555555555555 33333333333333333333 11111111
lowQualScore : 3 555 3 0 555 3 66 3 555 3 3 6 3 77 22 2 2 555 2 77777 5555 2 00000 2 11111111 3 6 7777777777777777777777777777777 4 11111111111111111111 2 44 3 55 33333333 55 55
lowQualScore : . ... . . ... . .. . ... . . . . .. .. . . ... . ..... .... . ..... . ........ . . ............................... . .................... . .. . .. ........ .. ..
lowQualScore : 6 888 3 0 888 3 88 1 111 1 1 2 1 33 99 9 9 000 9 11111 7777 9 00000 9 22222222 1 2 3333333333333333333333333333333 4 77777777777777777777 9 22 6 00 22222222 00 00
consensus : AAT-TTATTTT---TAAT-CCCAT-A---CTGAA-CACTCGGATGT-TA-C-ATGTCA-GT-ACACACAAAC-GTATTT-ATT--GTGAAT-ACAC-T-TC---G-T-----TCCTGGTGA--T-G-C-----AAGGCAAA-T--------ATT-TA-CTGAATAAAAAA--T-AAA-GCAAAAAA-AAAA--------AAAAAA-A------TTT-CGA-CCC---CGACCCTACATTATTTTC-GAGAT-GTAATC--GGAAACAC--------ACC--T--TTTTTTTTTTTTG
Reference ( family-804 ) : AAT-TTATTTT---TAAT-CCCAT-A---CTGAA-CACTCGGATGT-TA-C-ATGTCA-GT-ACACACAAAC-GTATTT-ATT--GTGAAT-ACAC-T-TC---G-T-----TCCTGGTGA--T-G-C-----AAGGCAAA-T--------ATT-TA-CTGAATAAAAAA--T-AAA-GCAAAAAA-AAAA--------AAAAAA-A------TTT-CGA-CCC---CGACCCTACATTATTTTC-GAGAT-GTAATC--GGAAACAC--------ACC--T--TTTTTTTTTTTTG
gi|1 : AAT-TTATTTT---TAAT-CCCAT-A---CTGAA-CACTCGGATGT-TA-C-ATGTCA-GT-ACACACAAAC-ATATTT-ATT--AAGAAT-ACAC-T-TC---G-T-----TCCTGGTAA--T-G-C-----AAGGCAAA-C--------ATT-TA-CTGAATAAAAAAATT-AAATGCAAAAAA-AAAA--------AAAAAA-A------TTT-CGA-TCC---CAATCCTACATTATTTTC-AAGAT-GTAATC--GAAAACACTTATAACTACC--T--TTTTTTTTTTTTG
gi|10 : AAT-TTATTTT---TAAT-CCCATGA---CTGAA-C-CTCGGATGT-CA-CAATGTCA-GT-ACACACAAACGGTATTA-ATT--GTGAAT-ACAC-TGTC---G-T-----TCCTGGTGA--T-GCC-----AAGGCAAA-T--------TTG-TA-ACGAATactttag
gi|11 : GATGT-TG-C-ATGTCA-GT-ACACACAAAA-GTTTAT-ATT--GTGAAT-TCAT-T-TC---G-T-----TCTTGTTGA--C-A-C-----AAGGCAAA-T--------ATT-TA-ATGAATAAAA------AAA-GCAAAAAATAAAATTG-----AAAAAA-A------
gi|12 : tcTGAAT-ACAC-T-TC---A-T-----TCCTGGTGA--T------------GCAAG----------------------------------GA-GCAAAA----AAA--------AAAAAT-T------TTT-----TTT---CGACCCTACATTATTTTC-AAGAT-GTAATC--AAAAACAC--------ACTTAT--TTTTTTTTTTTTG
gi|13 : AT-TTATTCT---TAAC-CCAAT-A---CTGAA-CACTCG-ATGT-TA-C-ATGTCA-GT-ACACACAAAT-TTATAT-ATT--GTATAT-ACGT-T-AC---G-T-----TCATGATGA--T-G-C-----AAGGCAAA-T--------ATT-TA-C
gi|14 : AT-TTATTTT----AAT-CCGAT-A---C---------------T-TA-G-ATGTTA-GT-ACAC---AACAGTAATT--TT--ATGAAT-TCAC-T-TC---ATT-----TTCTGGTGAATT-G-C-----AGAGCAAA-gg
gi|15 : ttgtgAATAAAAGT--T-AAA-AAAAAAAA-AAAA--------AAAAAA-A------ATT-CGA-CCC---CGA-CCTAC---ATTTTC--ATAT-GTAATC---GAACCAC--------ACC--T--aaatttt
gi|16 : aCATTATTTTC-GATAT-GTAATC--GGAAACAC--------AAC--T--TTTTTaatttgtt
gi|2 : AAT-TTATTTTATTTAAT-CCCAT-G---TTGAA-CACTC-AATAA-TATC-ATATCA-GT-ACACACAAAC-GTATTT-ATT--ATGAAT-TCAC-T-TC---G-T-----TCCTGGTGA--G-G-C-----TAGGCAAATT--------TTT-TA-CTGAATAAAAAA--TAAAA-GC-----A-AAAATTTTTTTTAAAAAA-A------TTT-CGACCCC---CGACCCTACATTATTTTC-GAGAT-GTAATC--GGAAACAC--------GCC--T--TTTTTCTTTCTT
gi|3 : AAT-TTATTTT---TAAT-CCCATTA---CTGAA-CACTCG-ATGT-TA---ATATCAAGT-ACAC-CAA-C-GTATTC-ATT--GTGAAT--CACAT-TC---G-T-----TC-TGGTGA--TTG-C-----A-GGAAAA-TTTTGTATGATTATA-GTGAATAAAAAA--T-AAA--------A-AGCA--------AAAAAACATTTTTTTTT-CGA-TCC---CAACCCTAC-TTTTTTTC-GATATGGTAATC--GGAAACAC--------ACC--T--TTTTTTTTTTTTtt
gi|4 : aAT-TTAATTT---TAAT-CCCAT-A---CTGAA-CACCCG-ATGT-TA-C-ATAT------ACACATAAAC-GTATTT-ATT--ATGAAT-ACAC-T-TCGGAG-TCTAGGTCCTGGTGA--T-G-C-----AAGGCAGA-T--------A---------AATAAAAA----------CAAAAAA-AAAAT-------AAAAAA-A------TTTCCGA-CCCTCTCGACCCTACATTATTTTC-GATAT-GTAATC--GGAAACAC--------ACT--T--TTTTTTTTT
gi|5 : AAT-TTACTTT---TAAT-GCAAT-A---CTGAAACACCTCGATAT-CA-C-AT--CA-GTTACACACAAAC-ATATTC-ATTATGTGAAT-ACAC-T-TC---A-T-----TCC-GGTGA--G-G-C-----AAGGCAAA-T--------ATT-CAACTGAATAAAAAA--T---------------------------AAAAA-G------------------------CCAACATTATTTT--GAGAT-GTAATCAAAGAAA-AC--------AAC--T--TATTTTTTTTTT
gi|6 : TT---TAAC-CCAAT-A---CTGAA-------------------TGTCA-GT-ACACACAGAT-TTATAT-ATC--GTGAAT-ACGT-T-AC---G-T-----TCATGGTGA--T-G-C-----AAGGCAAA-T--------ATT-TA-CTGAATAA
gi|6 : ---CGACCCTACATTATTTTC-GAGAT-GTAATA--GG-AACAC--------AGC--T--ATTTTTTTcaccccccccccccattaaaaacatctttttttcgaccctacattattttcgagatgtaataggaacacagctatttttttc
gi|7 : tttaacccaatactgaatgtcagtacacacagatttatatatcgtgaatacgttacgttcatggtgatgcaaggcaaatatttactgaataacaccccccccccccattaaaaacatctttttttT-TTACTTT---TAAT-CACAT-A---CTGAA-CACTTCGATAT-CA-T-A-ATCA-GT-ACACACAAAC-ATATTC--TT---TGAATCACAC-T-TC-----T-----TCCCGGTGA--G-G-CCATTGAAGGCAAA-T--------ATT-TAACTGAATA-------------------AA-AAAT--------AAAAGC-A---------------------------ACATTATTTTTTGAGAT-GTAATC--GGAAACA---------ACC--T--ATTTTTTTTc
gi|8 : AATATTACTTT---T----CACAT-ATACCTGAA-CACTCG-ATACATA-C-ATATCA-GT-A-ACACAA-C-ATACTTCATTC-ATGAAC-ATAA-C-TT---G-T-----CCCCGGTGA--G-G-CG----AAGGCAAA-T--------ATT-TA-CTG-AT-AAAAA--T-AAA-
gi|8 : ACATTACTTT--GAGAT-GTAATC--GGAAACAC--------ACC--TAATTTTTTTaacattactttgagatgtaatcggaaacacacctaattttttt
gi|9 : aatattacttttcacatatacctgaacactcgatacatacatatcagtaacacaacatacttcattcatgaacataacttgtccccggtgaggcgaaggcaaatatttactgataaaaataaaaAAT-TTGTTTT---TATTACCCATTA---CTGAA-CACTTG-ATGT-TA-C-ATGTCA-GT-ACACACTTAC-ATGTAT-ATC--GTGCAT-AAGA-T-TC---G-T-----TCCCTGTGA--T-A-T-----AAGGCAAA-T--------ATT-TA-CTGA
Alignments
lowQualScore : 1 11 11111 11111111 5555555555555555555555555555555 33333333333333333333 11111111
lowQualScore : 3 555 3 0 555 3 66 3 555 3 3 6 3 77 22 2 2 555 2 77777 5555 2 00000 2 11111111 3 6 7777777777777777777777777777777 4 11111111111111111111 2 44 3 55 33333333 55 55
lowQualScore : . ... . . ... . .. . ... . . . . .. .. . . ... . ..... .... . ..... . ........ . . ............................... . .................... . .. . .. ........ .. ..
lowQualScore : 6 888 3 0 888 3 88 1 111 1 1 2 1 33 99 9 9 000 9 11111 7777 9 00000 9 22222222 1 2 3333333333333333333333333333333 4 77777777777777777777 9 22 6 00 22222222 00 00
consensus : AAT-TTATTTT---TAAT-CCCAT-A---CTGAA-CACTCGGATGT-TA-C-ATGTCA-GT-ACACACAAAC-GTATTT-ATT--GTGAAT-ACAC-T-TC---G-T-----TCCTGGTGA--T-G-C-----AAGGCAAA-T--------ATT-TA-CTGAATAAAAAA--T-AAA-GCAAAAAA-AAAA--------AAAAAA-A------TTT-CGA-CCC---CGACCCTACATTATTTTC-GAGAT-GTAATC--GGAAACAC--------ACC--T--TTTTTTTTTTTTG
Reference ( family-804 ) : AAT-TTATTTT---TAAT-CCCAT-A---CTGAA-CACTCGGATGT-TA-C-ATGTCA-GT-ACACACAAAC-GTATTT-ATT--GTGAAT-ACAC-T-TC---G-T-----TCCTGGTGA--T-G-C-----AAGGCAAA-T--------ATT-TA-CTGAATAAAAAA--T-AAA-GCAAAAAA-AAAA--------AAAAAA-A------TTT-CGA-CCC---CGACCCTACATTATTTTC-GAGAT-GTAATC--GGAAACAC--------ACC--T--TTTTTTTTTTTTG
gi|1 : AAT-TTATTTT---TAAT-CCCAT-A---CTGAA-CACTCGGATGT-TA-C-ATGTCA-GT-ACACACAAAC-ATATTT-ATT--AAGAAT-ACAC-T-TC---G-T-----TCCTGGTAA--T-G-C-----AAGGCAAA-C--------ATT-TA-CTGAATAAAAAAATT-AAATGCAAAAAA-AAAA--------AAAAAA-A------TTT-CGA-TCC---CAATCCTACATTATTTTC-AAGAT-GTAATC--GAAAACACTTATAACTACC--T--TTTTTTTTTTTTG
gi|10 : AAT-TTATTTT---TAAT-CCCATGA---CTGAA-C-CTCGGATGT-CA-CAATGTCA-GT-ACACACAAACGGTATTA-ATT--GTGAAT-ACAC-TGTC---G-T-----TCCTGGTGA--T-GCC-----AAGGCAAA-T--------TTG-TA-ACGAATactttag
gi|11 : GATGT-TG-C-ATGTCA-GT-ACACACAAAA-GTTTAT-ATT--GTGAAT-TCAT-T-TC---G-T-----TCTTGTTGA--C-A-C-----AAGGCAAA-T--------ATT-TA-ATGAATAAAA------AAA-GCAAAAAATAAAATTG-----AAAAAA-A------
gi|12 : tcTGAAT-ACAC-T-TC---A-T-----TCCTGGTGA--T------------GCAAG----------------------------------GA-GCAAAA----AAA--------AAAAAT-T------TTT-----TTT---CGACCCTACATTATTTTC-AAGAT-GTAATC--AAAAACAC--------ACTTAT--TTTTTTTTTTTTG
gi|13 : AT-TTATTCT---TAAC-CCAAT-A---CTGAA-CACTCG-ATGT-TA-C-ATGTCA-GT-ACACACAAAT-TTATAT-ATT--GTATAT-ACGT-T-AC---G-T-----TCATGATGA--T-G-C-----AAGGCAAA-T--------ATT-TA-C
gi|14 : AT-TTATTTT----AAT-CCGAT-A---C---------------T-TA-G-ATGTTA-GT-ACAC---AACAGTAATT--TT--ATGAAT-TCAC-T-TC---ATT-----TTCTGGTGAATT-G-C-----AGAGCAAA-gg
gi|15 : ttgtgAATAAAAGT--T-AAA-AAAAAAAA-AAAA--------AAAAAA-A------ATT-CGA-CCC---CGA-CCTAC---ATTTTC--ATAT-GTAATC---GAACCAC--------ACC--T--aaatttt
gi|16 : aCATTATTTTC-GATAT-GTAATC--GGAAACAC--------AAC--T--TTTTTaatttgtt
gi|2 : AAT-TTATTTTATTTAAT-CCCAT-G---TTGAA-CACTC-AATAA-TATC-ATATCA-GT-ACACACAAAC-GTATTT-ATT--ATGAAT-TCAC-T-TC---G-T-----TCCTGGTGA--G-G-C-----TAGGCAAATT--------TTT-TA-CTGAATAAAAAA--TAAAA-GC-----A-AAAATTTTTTTTAAAAAA-A------TTT-CGACCCC---CGACCCTACATTATTTTC-GAGAT-GTAATC--GGAAACAC--------GCC--T--TTTTTCTTTCTT
gi|3 : AAT-TTATTTT---TAAT-CCCATTA---CTGAA-CACTCG-ATGT-TA---ATATCAAGT-ACAC-CAA-C-GTATTC-ATT--GTGAAT--CACAT-TC---G-T-----TC-TGGTGA--TTG-C-----A-GGAAAA-TTTTGTATGATTATA-GTGAATAAAAAA--T-AAA--------A-AGCA--------AAAAAACATTTTTTTTT-CGA-TCC---CAACCCTAC-TTTTTTTC-GATATGGTAATC--GGAAACAC--------ACC--T--TTTTTTTTTTTTtt
gi|4 : aAT-TTAATTT---TAAT-CCCAT-A---CTGAA-CACCCG-ATGT-TA-C-ATAT------ACACATAAAC-GTATTT-ATT--ATGAAT-ACAC-T-TCGGAG-TCTAGGTCCTGGTGA--T-G-C-----AAGGCAGA-T--------A---------AATAAAAA----------CAAAAAA-AAAAT-------AAAAAA-A------TTTCCGA-CCCTCTCGACCCTACATTATTTTC-GATAT-GTAATC--GGAAACAC--------ACT--T--TTTTTTTTT
gi|5 : AAT-TTACTTT---TAAT-GCAAT-A---CTGAAACACCTCGATAT-CA-C-AT--CA-GTTACACACAAAC-ATATTC-ATTATGTGAAT-ACAC-T-TC---A-T-----TCC-GGTGA--G-G-C-----AAGGCAAA-T--------ATT-CAACTGAATAAAAAA--T---------------------------AAAAA-G------------------------CCAACATTATTTT--GAGAT-GTAATCAAAGAAA-AC--------AAC--T--TATTTTTTTTTT
gi|6 : TT---TAAC-CCAAT-A---CTGAA-------------------TGTCA-GT-ACACACAGAT-TTATAT-ATC--GTGAAT-ACGT-T-AC---G-T-----TCATGGTGA--T-G-C-----AAGGCAAA-T--------ATT-TA-CTGAATAA
gi|6 : ---CGACCCTACATTATTTTC-GAGAT-GTAATA--GG-AACAC--------AGC--T--ATTTTTTTcaccccccccccccattaaaaacatctttttttcgaccctacattattttcgagatgtaataggaacacagctatttttttc
gi|7 : tttaacccaatactgaatgtcagtacacacagatttatatatcgtgaatacgttacgttcatggtgatgcaaggcaaatatttactgaataacaccccccccccccattaaaaacatctttttttT-TTACTTT---TAAT-CACAT-A---CTGAA-CACTTCGATAT-CA-T-A-ATCA-GT-ACACACAAAC-ATATTC--TT---TGAATCACAC-T-TC-----T-----TCCCGGTGA--G-G-CCATTGAAGGCAAA-T--------ATT-TAACTGAATA-------------------AA-AAAT--------AAAAGC-A---------------------------ACATTATTTTTTGAGAT-GTAATC--GGAAACA---------ACC--T--ATTTTTTTTc
gi|8 : AATATTACTTT---T----CACAT-ATACCTGAA-CACTCG-ATACATA-C-ATATCA-GT-A-ACACAA-C-ATACTTCATTC-ATGAAC-ATAA-C-TT---G-T-----CCCCGGTGA--G-G-CG----AAGGCAAA-T--------ATT-TA-CTG-AT-AAAAA--T-AAA-
gi|8 : ACATTACTTT--GAGAT-GTAATC--GGAAACAC--------ACC--TAATTTTTTTaacattactttgagatgtaatcggaaacacacctaattttttt
gi|9 : aatattacttttcacatatacctgaacactcgatacatacatatcagtaacacaacatacttcattcatgaacataacttgtccccggtgaggcgaaggcaaatatttactgataaaaataaaaAAT-TTGTTTT---TATTACCCATTA---CTGAA-CACTTG-ATGT-TA-C-ATGTCA-GT-ACACACTTAC-ATGTAT-ATC--GTGCAT-AAGA-T-TC---G-T-----TCCCTGTGA--T-A-T-----AAGGCAAA-T--------ATT-TA-CTGA
blockSeqs : A ATT A G TAC A GG A CA A T G C AT CA A G GGA T CTAGG ATT C CATTG T TTTGTATG A A AATAAAAGCAAAAATTTTTTTT C TTTTTTTTTCGATCC C TT G AA . TA AA
blockSeqs : . . . T . . CG . TC . . A . C A . . . . . TT . G . . . A AAAGCAAAAAATAAAATTG . TTTCCGACCCTCT C C . . . . .
blockSeqs : . . . T . . CG . C . . . . . T . . . . . T . . . . . . GTTAAAAAAAAAAAAAAA . TTTCGACCCC C C . . . . .
blockSeqs : . . . . . . G . C . . . . . A . . . . . C . . . . . . ACAAAAAAAAAAT . ATTCGACCC C C . . . . .
blockSeqs : . . . . . . A . G . . . . . A . . . . . T . . . . . . GAGCAAAAAAA . TTTTTT C C . . . . .
blockSeqs : . . . . . . G . C . . . . . T . . . . . T . . . . . . AATAAAAAGCA . . . C . . . . .
blockSeqs : . . . . . . G . C . . . . . T . . . . . G . . . . . . AAAAAT . . . C . . . . .
blockSeqs : . . . . . . G . T . . . . . A . . . . . T . . . . . . AAT . . C . . . . .
blockSeqs : . . . . . . G . C . . . . . A . . . . . G . . . . . . . . . . . .
blockSeqs : . . . . . . . . C . . . . . A . . . . . T . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . A . . . . . G . . . . . .
blockSeqs : . . . . . . . A . . . . . G . . . . . .
blockSeqs : . . . . . . T . . .
blockSeqCons : G* AAAAAAAAAAAT******************* TTTCGACCC*********** ********
originalCons : AAT-TTATTTT---TAAT-CCCAT-A---CTGAA-CACTCGGATGT-TA-C-ATGTCA-GT-ACACACAAAC-GTATTT-ATT--GTGAAT-ACAC-T-TC---G-T-----TCCTGGTGA--T-G-C-----AAGGCAAA-T--------ATT-TA-CTGAATAAAAAA--T-AAA-GCAAAAAA-AAAA--------AAAAAA-A------TTT-CGA-CCC---CGACCCTACATTATTTTC-GAGAT-GTAATC--GGAAACAC--------ACC--T--TTTTTTTTTTTTG
finalCons : AAT-TTATTTT---TAAT-CCCAT-A---CTGAA-CACTCG-ATGT-TA-C-ATGTCA-GT-ACACACAAAC-GTATTT-ATT--GTGAAT-ACAC-T-TC---G-T-----TCCTGGTGA--T-G-C-----AAGGCAAA-T--------ATT-TA-CTGAATAAAAAAAAAAAAAAAT-------------------AAAAAA-ATTTCGACCC-----------CGACCCTACATTATTTTC-GAGAT-GTAATC--GGAAACAC--------ACC--T--TTTTTTTTTTTTG
Alignments
lowQualScore : 1 11111 11111 11111111 44444444444444444444444444444444444444444444444444444444444444444444444444444444 11111111
lowQualScore : 3 555 3 0 555 3 3 3 6 3 3 3 3 3 6 3 77 22 2 2 00000 555 5555 2 00000 2 11111111 3 6 22222222222222222222222222222222222222222222222222222222222222222222222222222222 3 0 3 55 33333333 55 55
lowQualScore : . ... . . ... . . . . . . . . . . . .. .. . . ..... ... .... . ..... . ........ . . ................................................................................ . . . .. ........ .. ..
lowQualScore : 6 888 3 0 888 3 1 1 2 1 1 1 1 1 2 1 33 99 9 9 00000 000 7777 9 00000 9 22222222 1 2 44444444444444444444444444444444444444444444444444444444444444444444444444444444 6 5 6 00 22222222 00 00
consensus : AAT-TTATTTT---TAAT-CCCAT-A---CTGAA-CAC-T-CG-ATGT-TA-CA-TGTCA-GT-ACACACAAAC-GTATTT-ATT--GTGAAT-ACAC-T-TCG-----T---TCCTGGTGA--T-G-C-----AAGGCAAA-T--------ATT-T-ACTGAATAAAAA-A---------AAAA--AAA------------AA-------TAAAAAAA--------TTTC-GA-CCC---CGACCCTACATTA-TTTTCGAGATG-TAATC--GGAAACAC--------ACC--T--TTTTTTTTTTTTG
Reference ( family-804 ) : AAT-TTATTTT---TAAT-CCCAT-A---CTGAA-CAC-T-CG-ATGT-TA-CA-TGTCA-GT-ACACACAAAC-GTATTT-ATT--GTGAAT-ACAC-T-TCG-----T---TCCTGGTGA--T-G-C-----AAGGCAAA-T--------ATT-T-ACTGAATAAAAA-A---------AAAA--AAA------------AA-------TAAAAAAA--------TTTC-GA-CCC---CGACCCTACATTA-TTTTCGAGATG-TAATC--GGAAACAC--------ACC--T--TTTTTTTTTTTTG
gi|1 : AAT-TTATTTT---TAAT-CCCAT-A---CTGAA-CAC-T-CGGATGT-TA-CA-TGTCA-GT-ACACACAAAC-ATATTT-ATT--AAGAAT-ACAC-T-TCG-----T---TCCTGGTAA--T-G-C-----AAGGCAAA-C--------ATT-T-ACTGAATAAAAA-AATTAAATGCAAAA--AAA------------AA-------AAAAAAAA--------TTTC-GA-TCC---CAATCCTACATTA-TTTTCAAGATG-TAATC--GAAAACACTTATAACTACC--T--TTTTTTTTTTTTG
gi|10 : AAT-TTATTTT---TAAT-CCCATGA---CTGAA-C-C-T-CGGATGT-CA-CAATGTCA-GT-ACACACAAACGGTATTA-ATT--GTGAAT-ACAC-TGTCG-----T---TCCTGGTGA--T-GCC-----AAGGCAAA-T--------TTG-T-AACGAATactttag
gi|11 : -T-CG-ATGT-TG-CA-TGTCA-GT-ACACACAAAA-GTTTAT-ATT--GTGAAT-TCAT-T-TCG-----T---TCTTGTTGA--C-A-C-----AAGGCAAA-T--------ATT-T-AATGAATAAAAA-A---------AGCA--AAA------------AA-------TAAAA
gi|12 : TGAAT-ACAC-T-TCA-----T---TCCTGGTGA--T-G-C-----AAGG-----------------------------AGC-A---------AAAA--A-------------------------AAAAAA--------TTTT-T--TTT---CGACCCTACATTA-TTTTCAAGATG-TAATC--AAAAACAC--------ACTTAT--TTTTTTTTTTTTGttgaaaaaaa
gi|13 : AT-TTATTCT---TAAC-CCAAT-A---CTGAA-CAC-T-CG-ATGT-TA-CA-TGTCA-GT-ACACACAAAT-TTATAT-ATT--GTATAT-ACGT-T-ACG-----T---TCATGATGA--T-G-C-----AAGGCAAA-T--------ATT-T-AC
gi|14 : AT-TTATTTT----AAT-CCGAT-A---C-----------------T-TA-GA-TGTTA-GT-ACAC---AACAGTAATT--TT--ATGAAT-TCAC-T-TCAT----T---TTCTGGTGAATT-G-C-----AGAGCAAA-gg
gi|15 : ttgtgTAAAAA-A---------AAAA--AAA------------AA--------AAAAAAA--------ATTC-GA-CCC---CGA-CCTAC---A-TTTTC-ATATG-TAATC---GAACCAC--------ACC--T--aaatttt
gi|16 : aaataaaagtCATTA-TTTTCGATATG-TAATC--GGAAACAC--------AAC--T--TTTTTaatttgtt
gi|2 : AAT-TTATTTTATTTAAT-CCCAT-G---TTGAA-CAC-T-CA-ATAA-TATCA-TATCA-GT-ACACACAAAC-GTATTT-ATT--ATGAAT-TCAC-T-TCG-----T---TCCTGGTGA--G-G-C-----TAGGCAAATT--------TTT-T-ACTGAATAAAAA-AT--------AAAAGCAAA------------AATTTTTTTTAAAAAAA--------TTTC-GACCCC---CGACCCTACATTA-TTTTCGAGATG-TAATC--GGAAACAC--------GCC--T--TTTTTCTTTCTT
gi|3 : AAT-TTATTTT---TAAT-CCCATTA---CTGAA-CAC-T-CG-ATGT-TA--A-TATCAAGT-ACAC-CAA-C-GTATTC-ATT--GTGAAT--CACAT-TCG-----T---TC-TGGTGA--TTG-C-----A-GGAAAA-TTTTGTATGATTAT-AGTGAATAAAAA-A---------TAAA--AAG---------------------CAAAAAAACATTTTTTTTTC-GA-TCC---CAACCCTACTTT--TTTTCGATATGGTAATC--GGAAACAC--------ACC--T--TTTTTTTTTTTTtt
gi|4 : aAT-TTAATTT---TAAT-CCCAT-A---CTGAA-CAC-C-CG-ATGT-TA-CA-TAT------ACACATAAAC-GTATTT-ATT--ATGAAT-ACAC-T-TCGGAGTCTAGGTCCTGGTGA--T-G-C-----AAGGCAGA-T--------A---------AATAAAAACA---------AAAA--AAA------------AA-------TAAAAAAA--------TTTCCGA-CCCTCTCGACCCTACATTA-TTTTCGATATG-TAATC--GGAAACAC--------AC------TTTTTTTTTTT
gi|5 : AAT-TTACTTT---TAAT-GCAAT-A---CTGAAACACCT-CG-ATAT-CA-CA-T--CA-GTTACACACAAAC-ATATTC-ATTATGTGAAT-ACAC-T-TCA-----T---TCC-GGTGA--G-G-C-----AAGGCAAA-T--------ATT-CAACTGAAT-------------------A--AAA------------AA-------TAAAAAG---------------------------CCAACATTA-TTTT-GAGATG-TAATCAAAGAAA-AC--------AAC--T--TATTTTTTTTTT
gi|6 : TT---TAAC-CCAAT-A---CTGAA---------------------TGTCA-GT-ACACACAGAT-TTATAT-ATC--GTGAAT-ACGT-T-ACG-----T---TCATGGTGA--T-G-C-----AAGGCAAA-T--------ATT-T-ACTGAATA---------------------ACACCCCCCCCCCCCAT-------TAAAAACA--------TCTT-TT-TTT---CGACCCTACATTA-TTTTCGAGATG-TAATA--GG-AACAC--------AGC--T--ATTTTTTT
gi|7 : T-TTACTTT---TAAT-CACAT-A---CTGAA-CAC-TTCG-ATAT-CA-TA--ATCA-GT-ACACACAAAC-ATATTC--TT---TGAATCACAC-T-TC------T---TCCCGGTGA--G-G-CCATTGAAGGCAAA-T--------ATT-TAACTGAATAAAAA-A---------TAAA--AGC------------AA---------------------------------------------CATTATTTTTTGAGATG-TAATC--GGAAACA---------ACC--T--ATTTTTTTTc
gi|8 : AATATTACTTT---T----CACAT-ATACCTGAA-CAC-T-CG-ATACATA-CA-TATCA-GT-A-ACACAA-C-ATACTTCATTC-ATGAAC-ATAA-C-TTG-----T---CCCCGGTGA--G-G-CG----AAGGCAAA-T--------ATT-T-ACTG-AT----------------------AAA------------AA-------TAAAAACA--------TT------------------------A-CTTT-GAGATG-TAATC--GGAAACAC--------ACC--TAATTTTTTT
gi|9 : AAT-TTGTTTT---TATTACCCATTA---CTGAA-CAC-T-TG-ATGT-TA-CA-TGTCA-GT-ACACACTTAC-ATGTAT-ATC--GTGCAT-AAGA-T-TCG-----T---TCCCTGTGA--T-A-T-----AAGGCAAA-T--------ATT-T-ACTGATTGGAGG-G---------GGAA--AAA------------A