lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2 4444444444444 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 333 11 1 11 22222222222222222222222222222222222222222222222222222222 5555555555 1 22 3333333 999999999999999999999999999 33333333333 111111 22222222222222222 1 11 333333 1 1 1 111 33333 11 333333 2222222 333 1 3 3333 111 555555555555555555555555555 2222222 1111111111111111111111111111111111111111111111111111111111111111111111111111111111 111 888888888888888888888888888888888888888888888888888 333333333333 1111 4
lowQualScore : 1 1 7 5 1 2222222222222 8 5 5 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 555 88 3 4 3 88 33333333333333333333333333333333333333333333333333333333 888 55 5555555555 2 5 4 33 1111111 7 666666666666666666666666666 1 88888888888 333333 0 11111111111111111 9 1 1 55 111111 5 5 1 5 5 1 5 111 88888 99 1 222222 5555555 555 0 3 0 6 33 5555 6 777 6 7 555 444444444444444444444444444 6 5555555 6 0 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 66 5 333 4 888888888888888888888888888888888888888888888888888 777 8 999999999999 777 4 4 8888888 2222 77 0
lowQualScore : . . . . . ............. . . . ........................................................................................................................ ... .. . . . .. ........................................................ ... .. .......... . . . .. ....... . ........................... . ........... ...... . ................. . . . .. ...... . . . . . . . ... ..... .. . ...... ....... ... . . . . .. .... . ... . . ... ........................... . ....... . . .................................................................................. . .. . ... . ................................................... ... . ............ ... . . ....... .... .. .
lowQualScore : 7 1 9 7 4 7777777777777 0 0 0 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 000 33 3 0 0 55 55555555555555555555555555555555555555555555555555555555 555 00 5555555555 5 0 0 00 7777777 3 333333333333333333333333333 0 00000000000 888888 6 11111111111111111 1 4 4 77 666666 7 7 4 7 0 1 0 777 77777 33 0 333333 7777777 000 0 2 4 7 22 8888 7 555 7 3 777 000000000000000000000000000 7 8888888 0 8 9999999999999999999999999999999999999999999999999999999999999999999999999999999999 1 99 0 111 4 999999999999999999999999999999999999999999999999999 888 9 444444444444 888 4 4 9999999 1111 99 0
consensus : CCGGTTGACACACGTTCTATCNAAC-GAAAACGGGTACAAC-C-TCAGCA-TATTTA-TGTGTCACCTCGC-CAANTCG--GTC--TGGAGAGAACGGAAG-------T-G-ACAGACTACG-GGAAAATG-T-AGAAATGGAAATATC-AAAATCAGCGCNAGNATAATTTAGGAAACAGAAT-------AATGTTTTGTTA--AAATAATT-TGTGTTTNGTNTTTGAATTA--A--GGCACAANNGTATATAACCTTNNTATTTGCTCAATCAACCATTAGNNCTG-CANNNTGTAGANNATTGTGCAGTGTCANACTTTTTATTCCATNTCTNGACACTTCCC-TCTAA-GAAGTTCTATA-----CAG--TGC-CTAGTTATC----AACTTCCGTTC-TNT-NCGGACCGA-TTNG-GAGGGANGACANA-TA-A-TATGCTGANGTT-GTACCCG--TTTTC---G-T-T-G-ATAGAACGTGTGTTCACCGGCGAC--A--AACA-ATCACCA-T-TAAGGAAA--ATC-GTCGCTGCANNNAATCTAACC-ACG-ATCGGCCAATAAATTGT-TAG-TTTA-G-AGTA-CAGAAAACGGGTGTTGAA-C-N-AG-T---GG-G--TA-------TA-TTTTT------AAGATGGCGACTTTCGTCCCC---CTTGTATTTG-ATTATA-TAC--AGTA--NTT-NAAGGGG-TGTT-ATTT----AA--N----CGATGTGC--T-AATGACCAAAACG--T-GTCG-ACAT-CGTTAT-C-----AG-A-T-GACT-T-CAAA----G-GGGA-T---T----AT----AGAGGAT---TCACA-TT---T-T-----ATTAT---TT-TT-TTT---ANT-TTA----C--ACAATCCGGAAGACAA-GCCCCTATG
Reference ( gi|1 ) : CCGGATGACACACATTCTATCCAAC-GAAAACGGGTACAAC-TCTCAGCATTATTTA-TCTGTCACGTCGCTCAAATTGCTGTCATTG----TAACGGAAG-------T-ATACAAACTACA-GGAAAATG-T-AGAAA--GGAATATTAAAAATCA----CAGCATAA-T--GGCAACAGAATAACCCAAAATG---TGTTA--AAATAATT-TGTGTTTTATTTTTGAATTATTAATGCCACAACAGT-TAGTACCTTTGTATCTGCTC---TAACCAT--GCTCTGTCATCATATAAACCAT----CAGTATCAGACTGTTTATTCCATATTTT-ACACTTCCC-TCTAATGAAGTTCTATA-----CAA-ATGC-CTAGTTATTT-TAAACTTCCGTTC-AAT-ACAG--CGA-TTGG-GAGGGAAGATAGA-TA-A-TATGCTGAAGTT-GTACCCG--TT--C---G-T-T-G-ATATAATGTCTGTTCACCGGCGACCAA--AACA-ATCACCA-T-TATGGAAA--ATT-TTCGCTGCATATAATCTCACCTACG-ATCGGCCAATAAATTTTATAG-TTTA-G-AGTA-CAGAAAACAGGTGTTGAA-C-G-AG-T---GG-G--TA-------TA-TTTCC------AAGATGGCGACTTTCGTTCCC---TTTGTACTTGCATTATA-TACACAGTA--TTT-TAAGGGG-TGTT-ACTT----AA--C----CGATGTGC--T-AATGACCAAAACG--T-GTTG-GAAT-TGTTAT-T-----AG-A-T-GA-T-T-CAAA----GTGGGA-T---T-A--AT----AGAGGAT---TCACA-TT---T-C-----ATTAT---TT-TT-TTT---AAT-TTA----C--ACAATCCGGAAGACAACGCCCCTATGT
gi|4 : CCGG-TGACACACATTCTATC-AAC-GAAAACAGGGACAAA-CTTCAGCA-TATTTATTCTGTCACCTCGC
gi|3 : ttttCCGGTTGACACACTTTCTATCATAC-GAAAACAGGTACA-----TCA-----AATTG-TGTGTTATCTTGC-CAAATCG--GTC--TGGAAAGAACGGACGTGATACAT-GTACAGACTTAG-GGAAAATG-TCAGAAATGGAAATATggacaaacacattcaccatttaggaaagatcatcccctgcagtaatctcatcaacgatcggccaataaattgttagtttaagagtacagaaacgggtgttgaactgagttggggggatattttccagatggcgacttcgtcccttgtattgattatagtactacttgaagggggtgctatttaaaacgaatgtggtgaatgaccaaacgggttggaattgttattagagttattcaaagggggggggatgggtaaataagagatttcacatttttattatgtatttttttttaaatttacaaacaatccggaaga
gi|2 : CCGG-TGACACACATTCTATCCAAC-GAAAACGGGTACAAC-T-TCAGCA-TATTTA-TCTGTCTCCTCGC-CAATTCCCTCTCATTG----GAACGGAAG-------TGAGACAGACTACAGGGAAAATGTT-AGAAATGGAAAGATT-AAAATCAGCGCTAGCATAATT--GGAAACAGAAT-------AATG---TGTTGTTAAATAATTATGTGTTTTATGTTTGAATTA--A--GGCACAAACGTATA--ACCTTTGTATTTG-TCAATCAACCATTAGAAC-G-CAGAATGTAGACCAT----C--TATCACACcgacaaacacatcggcacgtaggaaaatcattgctgcattgaatctaaccacgatcagccaatgaatttcttagtttagagtacaaaaacgagtgttgaacctagtgggggtgtattttttaagatggcgactttcgtccatatattgacttagtagttacaaggggtgttattttaacgataaataacaaaaaggtattgacatcgttatcggaataaattcaaaggggattttctgagagaatcatactttttttattttatattttccacaatcc
gi|2 : CCGGG-AACACACATTCTATCCAAC-GAAAACGGGTACAAA-CTTCAGCA-TATTacaatcagaagagaagtgagactgatgctcacatatgatatatgatcaacgtatgtggtcctcttgaagttatatatcgaacaggatactctagttagcagcatatgctatatggcgaaggatggaagtataatatgctgaagtttgtacccgttttcgttggatagaatgtgtgttcccggcgcaacaaacacataccagttaggaaatttcgctgaattaaattaaccacgatcggccaataaattgttagttttggagtacagaaacgggtgttgaaaaagctagggatat
gi|5 : ccggtgacacacattctatccaacgaaaacgggtacaacttcagcatatttatctgtctcctcgccaattccctctcattggaacggaagtgagacagactacagggaaaatgttagaaatggaaagattaaaatcagcgctagcataattggaaacagaataatgtgttgttaaataattatgtgttttatgtttgaattaaggcacaaacgtataacctttgtatttgtcaatcaaccattagaacgcagaatgtagaccatctatcacacacaatcagaagagaagtgagactgatgctcacatatgatatatgatcaacgtatgtggtcctcttgaagttatatatcgaacaggatactctagttagcagcatatgctatatggcgaaggatggaagtatCCGGTTGACACACGATCTATCAAACAGAAAACAGGTACAGC--ATCAACA--ATTTG-TGTGTCAcgcaacaaacacataccagttaggaaatttcgctgaattaaattaaccacgatcggccaataaattgttagttttggagtacagaaacgggtgttgaaaaagctagggatat
gi|10 : gttttccggattgtggaaaataaaatgtaattcctttagaaaatcccctttgaagtcattctcattacgatgtcaacacgtctggttatttatacagtgtttgaataacacccctgtaactactacatcaataccagggacgaaagtcgccatcttagaaatatacccccactaggttcaacacccatttctgtactatacactaacaattcattggctgatcgtggttagatccactgcgccaatgattttcctaaatggtgtgtgtcgCCAGTTTACACACGTTCTATCAAAC-GAAAACAGGTGCAACATCT--ACA--ATATA-TGCATCATCTCGC-CAAGTCG--GTC--TGGAGAGAACGGAAG------------------ACA-G--AAATG----------GAAATATC-AAAAT------GAGGATAA-TTAGG-AATAGAAT-------AATGTTTTGTTA--AAATAGTT-TG
gi|13 : tgtttgtcaCGGCTGACACACGTTCTAT-CAAC-G-AAACAGGTACAAC-ca
gi|9 : cgatttggtaaggtgacaggatttcttgatTTA--AAATAATT-TGTATTTAGTTT--GAATTA-----GGCACAACAGT-TATAACCTTGTTAT-TGCTC---TAACC-----TCCTG-CATCCTATAAAAAATTGTGCAGTG-CAGACTTTTTATTTCATATTTTGACACTTCCCCTCTAA-GAAAATCTATA-----CAA---GC-CTAGTTATTTGTAAACTTCCGTTC-tgacaaaccatcaacatttaggaaaaattatcgcttaaaagtgaatttaatcacga
gi|3 : TTCCATTTCTG-ACATTTTCC--CTAA----GT-CTGTA-----CA---TG-------TATC-----ACGTCCGTTC-TTT-CCAGACCGA-TTTG-GCAAGATAACACA-CA-A-T---TTGA---T-GTACCTG--TTTTC---G-TAT-G-ATAGAAAGTGTGTCAACCGGCGAC--A--AACACATCGGCA-CGTA-GGAAA--ATC-ATTGCTGCATTGAATCTAACC-ACG-ATCAGCCAATGAATTTCTTAG-TTTA-G-AGTA-CA-AAAACGAGTGTTGAACC-T-AG-TGG-GG-G--TG-------TATTTTTT------AAGATGGCGACTTTCGTCCA------TATA-TTG---------ACTTAGTA--GTTACAAGGGG-TGTT-ATTT----TA--A----CGATA-------AATAACAAAAAGG--T-ATTG-ACAT-CGTTAT-C-----GGAA-TAAA-T-T-CAAA----G-GGGA-T---T-----TTCTGAGAGAA----TCATACTT---T-T-----TTTA-----T-TT-TAT---ATT-TTC----C--ACAATCCcaa
gi|2 : atatCC-TCT--TGAAGTTATATATCGAACAGGATACTCTAGTTAGC----AGCATATGCT---AT-ATGG--CGA---AG-GATGGAAG-TA---TA-A-TATGCTGAAGTTTGTACCCG--TTTTC---G-T-T-GGATAGAATGTGTGTTC-CCGGCG--CAACAAACACAT-ACCAGT-TA-GGAAA----T-TTCGCTGAAT-TAAATTAACC-ACG-ATCGGCCAATAAATTGT-TAGTTTTG-G-AGTA-CAG-AAACGGGTGTTGAA-A-A-AGCT---AG-G--GA-------TA-T
gi|2 : ccggtgacacacattctatccaacgaaaacgggtacaacttcagcatatttatctgtctcctcgccaattccctctcattggaacggaagtgagacagactacagggaaaatgttagaaatggaaagattaaaatcagcgctagcataattggaaacagaataatgtgttgttaaataattatgtgttttatgtttgaattaaggcacaaacgtataacctttgtatttgtcaatcaaccattagaacgcagaatgtagaccatctatcacacacaatcagaagagaagtgagactgatgctcacatatgatatatgatcaacgtatgtggtACTTCCGTTCCAATGAGAG--GGAATTGGCGAGG--AGACAGA-TA-AATATGCTGAAGTT-GTACCCGTTTT--C---G-T-TGG-ATAGAATGTGTG-TCACCGG
gi|10 : CTTCCGTTC-TCT-CCAGACCGA-CTTG-GCGAGATGATGCA-TATA-T-TGTAGATGTT-GCACCTGTTTT--C---GTT-T-G-ATAGAACGTGTGTAAACTGGTGAC--A--AACA-gagacagactacagggaaaatgttagaaatggaaagattaaaatcagcgctagcataattggaaacagaataatgtgttgttaaataattatgtgttttatgtttgaattaaggcacaaacgtataacctttgtatttgtcaatcaaccattagaacgcagaatgtagaccatctatcacacacaatcagaagagaagtgagactgatgctcacatatgatatatgatcaacgtatgtggtcctcttgaagttatatatcgaacaggatactctagttagcagcatatgctatatggcgaaggatggaagtataatatgctgaagtttgtacccgttttcgttggatagaatgtgtgttcccggcgcaacaaacacataccagttaggaaatttcgctgaattaaattaaccacgatcggccaataaattgttagttttggagtacagaaacgggtgttgaaaaagctagggatat
gi|4 : -TTGC-GAGGT--GACAGAATA-AATATGCTGAAGTTTGTCCCTG--TTTTC---G-T-T-G-ATAGAATGTGTGT-CACCGGGGACAAA--CACA-TTCACCA-T-TTAGGAAAG-ATCATCCCCTGCA-GTAATCTCATCAACG-ATCGGCCAATAAATTGT-TAG-TTTAAG-AGTA-CAGAAA-CGGGTGTTGAA-CTG-AG-TTGGGG-G--GA-------TA-TTTTC------CAGATGGCGACTT-CGTCCC-----TTGTA-TTG-ATTATAGTAC----TA--CTT-GAAGGGGGTGCT-ATTT----AAAAC----GAATGTGG--TGAATGACCAAA-CG--G-GTTG-GAAT-TGTTAT-T-----AG-AGT-TA-T-T-CAAAGGGGGGGGGA-TGGGTAA--ATA---AGAGATT---TCACATTT---T-T-----ATTATGTATT-TT-TTTTTAAAT-TTA----CAAACAATCCGGAAGAacagaaatggaaatatcaaaatgaggataattaggaatagaataatgttttgttaaaatagtttgca
gi|5 : ttA-A-T-TGTTGATGCT-GTACCTG--TT--TTCTG-T-TTG-ATAGATCGTGTGTCAACCGGCGAC------ACA---CACCA-T-TTAGGAAA--ATC-ATTGGCGCAGTGGATCTAACC-ACG-ATCAGCCAATGAATTGT-TAG-TGTA-T-AGTA-CAGAAA-TGGGTGTTGAA-C-CTAG-T---GG-GGGTA-------TA-TTTCT------AAGATGGCGACTTTCGT--CC---CTGGTA-TTG----ATG-T----AGTA--GTT-ACAGGGG-TGTT-ATTC----AA--A----CACTGTAT--A-AATAACC-AGACG--T-GTTG-ACAT-CGTAAT-G-----AGAA-T-GACT-T-CAAA----G-GGGATT---T-T--CT----AAAGGAA---TTACA-TT------------TTAT---TT-TC------------------C--ACAATCCGGAAAAC
gi|13 : TGATGTT-GTACCTG--TTT-C---G-T-T-G-ATAGAACGTGTG-TCAGCCGTGAC--A--AACC-ATCAACATT-TAGGAAAA--ATT-ATCGCTtgtgtgtca
gi|6 : cgatttggtaaggtgacaggatttctCATCA-T-TA-GGAAATCATC-GTTGCTGCGGA--ATCTAA---ACGCAT-AATCAATAAATTT-A-AG-ATTA-GGAGTAGCAGAA-----GTGT-GAA------G-T---GA-G---A-------T--TTTCT------AAT-TGGTGACTTTCTTT--C---TTTTTATTTGAATTtaaaagtgaatttaatcacga
gi|7 : tttcagattttagaaaataaagcatcatttttaaaaccccattatgattcgttttcatgatgcatagtaattatacatcattggaataacagtctcACG-ATAACCCAATAACTTGTA-AG-TTTA-G-TGTT-CAG-AAACGGGAGTTAAACC-A-AG-T---GGAG--TATTTTTTTTA-TTTTTTTTTTGAAGTTTGTGACTTTTGT--CC---CTTGTACTTA---TATA-TA-------------------G-TTCT-ACTTGCAGAA--------GATGTAT--A-AATGACTAAAACA--T-GTCG-TCAT-CGTTAT-TA----AA-A-T-AACC-T-CTAA----GGACAG-T---T-T--AT----AGAGGCTGAATCATA-TT---T-
gi|8 : cTCCCAAATTAGTATTTGGATTATA-CGTGCACTAAGCTT-TAATGGGCTGTTTACTT----AA--CGAAGTGATG-GCCGT-AATGACCAAAACAACTGGTCGCGAAT-TGTTATATCTATAAG-AGT-GACT-T-CAAA----GGGGG-----------------GGGGGAT---TGGGA-TTAGCT-C-----A--AT---TT-TT-T
gi|11 : GTGCAGT-AATTACCAAAGCA--T-TTCG-ACAT-CGTTAT-CC----AT-A-C-AA-C-CACGAA----G-GTGA-T---T-----TCCA-AGAGGAT---CCACA-TT---T-TTACT-ATTAT---TT-TT-TTT---AATCTTAATTCC--ACAATCCGAAAGACgaatctaagttttttccaataatctgg
gi|16 : cttgtgttgataggattctacttgcatggtgtgtcatatatgTGACCAAAACG--T-GTCA-ACAT-CGTTAT-G-----AGAA-T-GACT-T-CAAA----G-GAAA-T---T-CTTAT----AGATGAT---TCATG-TT---T--------TCAT---TT-TA-TTT---
gi|15 : gtagagCG--T-GTTG-ACATCTTTTA--------AA-A-T----T-T-TCAA----GTGAT--T---T-A--AT----ACAAGAT---TTGTA-TT---TTC-----AACAT---TTATT-TTT---ATT-TTA----C--ACAGTCCGGCAGACAA-GCTCC
gi|12 : -GAAT-T-TTAT-C-----AG-AAT-GA-CCT-CAAA----G-GAGT-T---T----------------T---TAACA-TT---T-TTATCAATTTT---TT-TTATTT---ATT-TTG----C--ACAATCCGGAATGCAA-GCCCTTATGagtgag
gi|17 : ttccttgtaccgacaagtgttgatgatatacttactagaattctTTTT---TC-TT-TTT---AAT-TTA----C--ACAATCCGGACGACAA-GCCCCTATGctc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): ATCTGTTTTTGTTTGAACAGGTGACAAGTACATCATCATTCAGGAAAACCATCGCTGCAGCGAAATCTAACGATAATCAAAATTAATATGGACTTATGTTTCATTGCAGAAACG
Alignments
lowQualScore : 11 22 1 11 33333333 33333333333333333333333333 444444444 3333 1 4444444 1 1 1 3333 1 33 3333 22222222222 2222 1 22 1 11 55555555555555 3333 33 11 1 2 11 11 1111 1111 333333333333 222222222 111111 22222 555555555555555555555555 11111 2222222 11111 222222222222 11111 5555555555555555555 2222222222 1
lowQualScore : 7 0 1 77 00 6 3 1 88 00000000 88888888888888888888888888 7 0 666666666 1 7777 5 3333333 5 3 0 11 4 0000 3 22 99 22 7 6 8888 99999999999 333 0 0 22 3333 5 1 3 1 0 00 3 3 33 4444 00000000000000 8888 7 3 3 1 1 0 00 0 1 22 1 1 00 999 7 3 0 3 6 6 6 6 2 9999 77 77 2 5 0 00 5 11 66 5 66 4444 4 4 5 5 1111 5 5 5 5555 5 9 1 333333333333 5 4 222222222 999999 3 55555 999999999999999999999999 777 88888 666 5 5 88888 5 8888888 1 11111 1 777777777777 2 4 00000 4 2222222222222222222 777 8 4444444444 0 7777 4 4 77777 4 8888 66 0
lowQualScore : . . . .. .. . . . .. ........ .......................... . . ......... . .... . ....... . . . .. . .... . .. .. .. . . .... ........... ... . . .. .... . . . . . .. . . .. .... .............. .... . . . . . . .. . . .. . . .. ... . . . . . . . . . .... .. .. . . . .. . .. .. . .. .... . . . . .... . . . .... . . . ............ . . ......... ...... . ..... ........................ ... ..... ... . . ..... . ....... . ..... . ............ . . ..... . ................... ... . .......... . .... . . ..... . .... .. .
lowQualScore : 3 7 0 00 77 7 3 0 33 00000000 77777777777777777777777777 3 7 000000000 0 0000 3 3333333 3 2 0 77 0 7777 3 00 00 00 3 7 3333 77777777777 000 7 7 00 5555 5 0 0 0 7 77 3 2 22 0000 00000000000000 8888 0 5 2 0 0 7 33 8 0 44 0 0 88 888 5 3 7 2 7 7 7 7 2 6666 99 99 9 0 2 66 0 99 55 0 99 6666 4 4 0 0 2222 0 0 0 2222 0 4 4 444444444444 7 9 333333333 222222 5 44444 111111111111111111111111 999 11111 222 0 0 22222 0 2222222 9 11111 1 555555555555 3 1 00000 0 7777777777777777777 000 0 8888888888 4 9999 0 0 77777 0 5555 11 0
consensus : CCGGTTGACACACGTTCTATCCAACGAAAACGGGTACAAC-NTCAGCAT-ATTTATCCGTCACCTCGC-CAANTCG--GTC--TGNA-GGAACGGAAGT--G-ACAGACTAC-GGGAAAATG-TAGAAATGGAAATATTAAAA-TCA----NAGCATAATT--GG-AACAGAATAA-------TGT-TTGTTAAAATAATT-TGTGTTTTAT-TTTGAATTA---AGGC-ACAACAGT-TATAACCTTTGTATTTGCTC---TAACCAT--GNNCTG-CATCATATAAACCATTGTGCAGTGTCAGACTNTTTATTCCATATTTTGACACTT-CCCTCTAA-GAAGTTCTATA-----CAAG-TGC-CTAGTTATCT---AACNTCCGTTCTATACGG--CGATTNGGAGGGATGACANA-TAA-TATGCTGAAGTT-GTACCCGTTTTC-GT-T-G-ATAGAACGTGTGTTC--ACCGGCG--AC--AAACACAT-CACCATTTAGG-AAA--ATCATCGC-T--GCA-NTGAATCTAACC-A-CGATCGGCCAATAAA-T-TG---T-TA-G-TTT-AG-AGTA-CAGAAAACGGGTGTTGAA-C-NA-G-T-G-GG-GTAT-------A-TTTCT------AAGATGGCGACTTTCGTCCCCCTTGTAT-TTG-ATTATA--T--ACAG---TAN--TT-GAA-GGG-G-TGTT-ATTT-AAA----CG-ATGTGN--T-AATGACCAAAAC-----GTGTCGACATCGTTAT--C----AG-A-TGACTTCAAA-----G-GGGA---T-------T--AT---AGAGGAT---TCACA-TTT----T-----ATTAT---TT-TT-TTT---ANT-TTA----C--ACAATCCGGAAGACAA-GCCCCTATG
Reference ( family-735 ) : CCGGTTGACACACGTTCTATCNAACGAAAACGGGTACAAC-CTCAGCAT-ATTTATGTGTCACCTCGC-CAANTCG--GTC--TGGAGAGAACGGAAGT--G-ACAGACTAC-GGGAAAATG-TAGAAATGGAAATATCAAAA-TCAGCGCNAGNATAATTTAGGAAACAGAATAA-------TGTTTTGTTAAAATAATT-TGTGTTTNGTNTTTGAATTA---AGGC-ACAANNGTATATAACCTTNNTATTTGCTCAATCAACCATTAGNNCTG-CANNNTGTAGANNATTGTGCAGTGTCANACTTTTTATTCCATNTCTNGACACTT-CCCTCTAA-GAAGTTCTATA-----CAG--TGC-CTAGTTATC----AACTTCCGTTCTNTNCGGACCGATTNGGAGGGANGACANA-TAA-TATGCTGANGTT-GTACCCGTTTTC-GT-T-G-ATAGAACGTGTGTTC--ACCGGCG--AC--AAACA-AT-CACCATTAAGG-AAA--ATCGTCGC-T--GCA-NNNAATCTAACC-A-CGATCGGCCAATAAA-T-TG---T-TA-G-TTT-AG-AGTA-CAGAAAACGGGTGTTGAA-C-NA-G-T---GG-GTAT-------A-TTTTT------AAGATGGCGACTTTCGTCCCCCTTGTAT-TTG-ATTATA--T--ACAG---TAN--TT-NAA-GGG-G-TGTT-ATTT-AAN----CG-ATGTGC--T-AATGACCAAAAC-----GTGTCGACATCGTTAT--C----AG-A-TGACTTCAAA-----G-GGGA---T-------T--AT---AGAGGAT---TCACA-TTT----T-----ATTAT---TT-TT-TTT---ANT-TTA----C--ACAATCCGGAAGACAA-GCCCCTATG
gi|1 : CCGGATGACACACATTCTATCCAACGAAAACGGGTACAACTCTCAGCATTATTTATCTGTCACGTCGCTCAAATTGCTGTCATTGTA----ACGGAAGT--ATACAAACTAC-AGGAAAATG-TAGAAA--GGAATATTAAAAATCA----CAGCATAAT---GGCAACAGAATAACCCAAAATGT---GTTAAAATAATT-TGTGTTTTATTTTTGAATTATTAATGCCACAACAGT-TAGTACCTTTGTATCTGCTC---TAACCAT--GCTCTGTCATCATATAAACCAT----CAGTATCAGACTGTTTATTCCATATTTT-ACACTT-CCCTCTAATGAAGTTCTATA-----CAAA-TGC-CTAGTTATTTTA-AACTTCCGTTCAATACAG--CGATTGGGAGGGAAGATAGA-TAA-TATGCTGAAGTT-GTACCCGTT--C-GT-T-G-ATATAATGTCTGTTC--ACCGGCG--ACCAAAACA-AT-CACCATTATGG-AAA--ATTTTCGC-T--GCA-TATAATCTCACCTA-CGATCGGCCAATAAA-T-TT---TATA-G-TTT-AG-AGTA-CAGAAAACAGGTGTTGAA-C-GA-G-T---GG-GTAT-------A-TTTCC------AAGATGGCGACTTTCGTTCCCTTTGTAC-TTGCATTATA--TACACAG---TAT--TT-TAA-GGG-G-TGTT-ACTT-AAC----CG-ATGTGC--T-AATGACCAAAAC-----GTGTTGGAATTGTTAT--T----AG-A-TGA-TTCAAA-----GTGGGA---T-------TA-AT---AGAGGAT---TCACA-TTT----C-----ATTAT---TT-TT-TTT---AAT-TTA----C--ACAATCCGGAAGACAACGCCCCTATG
gi|10 : CCAGTTTACACACGTTCTATCAAACGAAAACAGGTGCAAC-ATCTACA--ATATATGCATCATCTCGC-CAAGTCG--GTC--TGGAGAGAACGGAA----G-AC-------------------AGAAATGGAAATATCAAAA-T------GAGGATAA-TTAGG-AATAGAATAA-------TGTTTTGTTAAAATAGTT-TGt
gi|11 : tgtttgtcaCTTGTGT-T-G-ATAGGA--T--TC-----TAC--TT-GCA-TGGTG-TGTC-ATAT-A------TG-GTGCAG--T-AATTACCAAAGC-----ATTTCGACATCGTTATC-C----AT-A-CAACCACGAA-----G-GTGA---T-------T---TCCAAGAGGAT---CCACA-TTTTTACT-----ATTAT---TT-TT-TTT---AATCTTAATTCC--ACAATCCGAAAGACca
gi|12 : TTAT--C----AG-AATGACCTCAAA-----G-GAGT---T-------T-------------T---TAACA-TTT----TTATCAATTTT---TT-TTATTT---ATT-TTG----C--ACAATCCGGAATGCAA-GCCCTTATG
gi|13 : ttccttgtaccgacaagtgttgatgatatacttactagaattctgaattCGATTTGGTAAGGTGACAGG---A-TTTCTTGATGTT-GTACCTGTTT-C-GT-T-G-ATAGAACGTGTG-TC--AGCCGTG--AC--AAACC-AT-CAACATTTAGGAAAA--ATTATCGC-TTAAAA-GTGAATTTAATC-A-CGActc
gi|14 : TGTTTGAACAGGTG--AC--AAGTACAT-CATCATTCAGG-AAA--ACCATCGC-T--GCAGCGAAATCTAACG-A-TAATCAA--AATTAA-TATGGACT-TATG-TTT--C-ATTG-CAGAAA
gi|15 : atctgttttC-----GTGTTGACATCTTT-T--A----AA-A-T--TTTCAA--------GTGA---T-------TTAAT---ACAAGAT---TTGTA-TTT----TC----AACAT---TTATT-TTT---ATT-TTA----C--ACAGTCCGGCAGACAA-GCTCCcg
gi|16 : TGACCAAAAC-----GTGTCAACATCGTTAT--G----AGAA-TGACTTCAAA-----G-GAAATTCT-------T--AT---AGATGAT---TCATG-TTT-----------TCAT---TT-TA-TTT----CT-CTA----C--agtgag
gi|17 : TTTT---TC-TT-TTT---AAT-TTA----C--ACAATCCGGACGACAA-GCCCCTATG
gi|2 : CCGGT-GACACACATTCTATCCAACGAAAACGGGTACAAC-TTCAGCAT-ATTTATCTGTCTCCTCGC-CAATTCC--CTC--TCATTGGAACGGAAGTGAG-ACAGACTACAGGGAAAATGTTAGAAATGGAAAGATTAAAA-TCAGCGCTAGCATAATT--GGAAACAGAATAA-------TGTGTTGTT-AAATAATTATGTGTTTTATGTTTGAATTA---AGGC-ACAAACG--TATAACCTTTGTATTTG-TCAATCAACCATTAGAAC-G-CAGAATGTAGACCATa
gi|2 : CCTCTT--GAAGTTATATATCGAACAGGATACTCTAGTTAGC----AGCATATG--CTATATGG--CGA--AGGATGGAAG---TA-TAA-TATGCTGAAGTTTGTACCCGTTTTC-GT-T-GGATAGAATGTGTGTTC---CCGGCGCAAC--AAACACAT--ACCAGTTAGG-AAA--TT--TCGC-T--GAA-TTAAAT-TAACC-A-CGATCGGCCAATAAA-T-TG---T-TA-GTTTT-GG-AGTA-CAG-AAACGGGTGTTGAA-A-AA-GCT---AG-GGAT-------A-Tctatcacacacaatcagaagagaagtgagactgatgctcacatatgatatatgatcaacgtatgtggtcctcttgaagttatatatcgaacaggatactctagttagcagcatatgctatatggcgaaggatggaagtataatatgctgaagtttgtacccgttttcgttggatagaatgtgtgttcccggcgcaacaaacacataccagttaggaaatttcgctgaattaaattaaccacgatcggccaataaattgttagttttggagtacagaaacgggtgttgaaaaagctagggatat
gi|3 : ccggtgacacacattctatccaacgaaaacgggtacaacttcagcatatttatctgtctcctcgccaattccctctcattggaacggaagtgagacagactacagggaaaatgttagaaatggaaagattaaaatcagcgctagcataattggaaacagaataatgtgttgttaaataattatgtgttttatgtttgaattaaggcacaaacgtataacctttgtatttgtcaatcaaccattagaacgcagaatgtagaccatctatcacacacaatcagaagagaagtgagactgatgctcacatatgatatatgatcaacgtatgtggtTTCCATTTCT-GACATTT-TCC-CTAA-G----TCTGTA-----CA---TG-------TATC----A-CGTCCGTTCTTTCCAGACCGATTTGGCAAGATAACACA-CAA-T---TTGA---T-GTACCTGTTTTC-GTAT-G-ATAGAAAGTGTGTCA--ACCGGCG--AC--AAACACAT-CGGCACGTAGG-AAA--ATCATTGC-T--GCA-TTGAATCTAACC-A-CGATCAGCCAATGAATT-TC---T-TA-G-TTT-AG-AGTA-CA-AAAACGAGTGTTGAACC-TA-G-TGG-GG-GTGT-------ATTTTTT------AAGATGGCGACTTTCGTCC-----ATATATTG-ACT---------TAG---TAG--TTACAA-GGG-G-TGTT-ATTT-TAA----CG-ATA-------AATAACAAAAAG-----GTATTGACATCGTTAT--C----GGAA-TAAATTCAAA-----G-GGGA---T-------T--TTCTGAGAGAA----TCATACTTT----T-----TTTA-----T-TT-TAT---ATT-TTC----C--ACAATCC
gi|4 : atatTTGCGAGG--TGACAGAATAAATATGCTGAAGTTTGTCCCTGTTTTC-GT-T-G-ATAGAATGTGTGT-C--ACCGGGG--AC--AAACACATTCACCATTTAGG-AAAG-ATCATCCCCT--GCA-GT-AATCTCATC-AACGATCGGCCAATAAA-T-TG---T-TA-G-TTTAAG-AGTA-CAG-AAACGGGTGTTGAA-CTGA-G-TTGGGG-GGAT-------A-TTTTC------CAGATGGCGAC-TTCGT--CCCTTGTA--TTG-ATTATAG-T--AC-----TAC--TT-GAAGGGG-G-TGCT-ATTTAAAA----CGAATGTGG--TGAATGACC-AAAC-----GGGTTGGAATTGTTAT--T----AG-AGTTA-TTCAAAGGGGGG-GGGA---TGGGTAAAT--A----AGAGATT---TCACATTTT----T-----ATTATGTATT-TT-TTTTTAAAT-TTA----CAAACAATCCGGAAGA
gi|5 : ttGACACA-CAA-ATTGTTGATGCT-GTACCTGTTTTCTGT-TTG-ATAGATCGTGTGTCA--ACCGGCG--AC--A--CA----CACCATTTAGG-AAA--ATCATTGG-C--GCA-GTGGATCTAACC-A-CGATCAGCCAATGAA-T-TG---T-TA-G-TGT-AT-AGTA-CAG-AAATGGGTGTTGAACC-TA-G-TGG-GG-GTAT-------A-TTTCT------AAGATGGCGACTTTCGT--CCCTGGTA--TTG------A--T--GTAG---TAG--TT-ACA-GGG-G-TGTT-ATTC-AAA----CA-CTGTAT--A-AATAACC-AGAC-----GTGTTGACATCGTAAT--G----AGAA-TGACTTCAAA-----G-GGGATT-T-------T--CT---AAAGGAA---TTACA-TTT----T-----AT--------------------T-TTC----C--ACAATCCGGAAAAC
gi|6 : -CATCATTA-GG-AAATCATCGTTGC-T--GC---GGAATCTAAAC-G-C-AT-AATCAATAAA-T-T----T-AA-G-ATT-AGGAGTAGCAGAA-----GTGT-GAA------G-T---GA-G-AT---------TTTCT------AAT-TGGTGACTTTCTT--TCTTTTTAT-TTG--------------------AA--TT-GA---GA-C-TGTT-ATTC-CAA----TG-ATGTA---T-AATTACTAa
gi|7 : tttcagattttagaaaataaagcatcatttttaaaaccccattatgattcgttttcatgatgcaC-A-CGATAACCCAATAAC-T-TG---T-AA-G-TTT-AG-TGTT-CAGAAA-CGGGAGTTAAA-C-CAAG-T---GGAGTATTTTTTTTA-TTTTTTTTTTGAAGTTTGTGACTTTTGTCCC--TTGTAC------TTATA--T--ATAGTTCTAC--TT-GCA-G---------------AA------G-ATGTAT--A-AATGACTAAAAC-----ATGTCGTCATCGTTAT--TA---AA-A-TAACCTCTAA-----G-GACAGT-T-------T--AT---AGAGGCTGAATCATA-TTT----
gi|8 : GTAT-TTGGATTATACGT--GCAC---TAAGCTT-TAA-TGG-GCTGTTTACTT-AACGAAGTG-ATG-GCCGT-AATGACCAAAACAACTGGTCGCGA-ATTGTTATATCTATAAG-AGTGACTTCAAA-----G-GGGG-------------------GGGGGAT---TGGGA-TTA----G-----CTCAA---TT-TT-TTG---AAT-CTA----
gi|9 : tcccaaattaTTAAAATAATT-TGTATTTAGT--TTGAATTA----GGC-ACAACAGT-TATAACCTTGTTATT-GCTC---TAACC-----TCCTG-CATCCTATAAAAAATTGTGCAGTG-CAGACTTTTTATTTCATATTTTGACACTTCCCCTCTAA-GAAAATCTATA-----CAA---GC-CTAGTTATTTGTAAACTTCCGTTCagttttttccaataatctgg
Alignments
lowQualScore : 11 22 1 11 4444444444 33333333333333333333333333 333333333 1111 444444444 1 1 1 3333 1 222 22222222222 2222 1 1 11 33333333333333 4444 11 11 1 1111 22222222222 111111111 111111 22222 11 5555555555555555555555555 1111 222222222 11111 222222222222 11111 5555555555555555555 2222222222 1
lowQualScore : 7 0 44 00 0 3 1 88 6666666666 88888888888888888888888888 7 999999999 5555 666666666 3 0 7 3 3 0000 3 7 7 6 333 55555555555 3333 5 1 7 6 3 3 33 4444 99999999999999 6666 1 3 1 0 33 0 1 22 1 00 999 7 3 0 3 6 6 6 6 2 9999 77 77 1 5 0 2 5 55 0 5 66 5 6666 0 4 4 4 5 5 1111 5 5 5 999 5 9 1 00000000000 11 888888888 999999 3 55555 22 7777777777777777777777777 0000 5 5 55555 5 888888888 1 11111 1 777777777777 2 4 00000 4 2222222222222222222 777 8 4444444444 0 7777 4 4 77777 4 8888 66 0
lowQualScore : . . .. .. . . . .. .......... .......................... . ......... .... ......... . . . . . .... . . . . ... ........... .... . . . . . . .. .... .............. .... . . . . .. . . .. . .. ... . . . . . . . . . .... .. .. . . . . . .. . . .. . .... . . . . . . .... . . . ... . . . ........... .. ......... ...... . ..... .. ......................... .... . . ..... . ......... . ..... . ............ . . ..... . ................... ... . .......... . .... . . ..... . .... .. .
lowQualScore : 3 7 33 77 7 3 0 33 3333333333 77777777777777777777777777 3 333333333 0000 333333333 2 0 3 3 3 7777 3 3 3 7 333 77777777777 5555 5 0 3 7 3 2 22 0000 22222222222222 8888 0 2 2 7 88 8 0 44 0 88 888 8 3 7 2 7 7 7 7 2 6666 99 99 4 0 2 2 0 44 2 0 99 0 5555 2 4 4 4 0 0 2222 0 0 0 000 0 4 4 00000000000 66 777777777 222222 5 44444 00 5555555555555555555555555 4444 0 0 88888 0 000000000 9 11111 1 555555555555 3 1 00000 0 7777777777777777777 000 0 8888888888 4 9999 0 0 77777 0 5555 11 0
consensus : CCGGTTGACACACGTTCTATCCAACGAAAACGGGTACAACT-TCAGCAT-ATTTATCCGTCACCTCGC-CAANTCG--GTC--TGNA--G-GAACGGAAGT--G-ACAGACTAC-GGGAAAATG-TAGAAATGGAAATATTAAAA-TCA----NAGCATAATT-GG-AACAGAATAAC-----G-T-TTGTTAAAATAATT-TGTGTTTTAT-TTT-GAATTA---AGGC-ACAACAGTTATAACCTTTGTATTTGCTC---TAACCAT--GNNCTG-CATCATATAAACCATTGTGCAGTGTCAGACTNTTTATTCCATATTTTGACACTT-CCCTCTAA-GAAGTTCTATA-----CAAG-TGC-CTAGTTATCT---AACNTCCGTTCTATACGG--CGATTNGGAGGGATGACANA-TAA-TATGCTGAAGTT-GTACCCGTTTTC-GT-T-G-ATAGAACGTGTGTTC--ACCGGCG--AC--AAACACAT-CACCATTTAGG-AAA-ATCATCGC-T--GC-ANTG-AATCTAACC-A-CG-ATCGGCCAATAAA-T-TG---T-TA-G-TTT-A-GAGTA-CAGAAAACGGGTGTTGAA-C-NA-G-T--GGGGTAT-------A-TTTCT------AAGATGGCGACTTTCGTCCCCCTTGTAT-TTG-ATTATA--TACA--GT---AN---TTG-AA-GGG-GTGTT-ATTT-AAACG-ATGTGNT------AATGACCAAAAC-----GTGTCGACATCGTTAT--C----AG-A-TGACTTCAAA-----G-GGGA---T-------T--AT---AGAGGAT---TCACA-TTT----T-----ATTAT---TT-TT-TTT---ANT-TTA----C--ACAATCCGGAAGACAA-GCCCCTATG
Reference ( family-735 ) : CCGGTTGACACACGTTCTATCCAACGAAAACGGGTACAACN-TCAGCAT-ATTTATCCGTCACCTCGC-CAANTCG--GTC--TGNA--G-GAACGGAAGT--G-ACAGACTAC-GGGAAAATG-TAGAAATGGAAATATTAAAA-TCA----NAGCATAATT-GG-AACAGAATAAT-----G-T-TTGTTAAAATAATT-TGTGTTTTAT-TTT-GAATTA---AGGC-ACAACAGTTATAACCTTTGTATTTGCTC---TAACCAT--GNNCTG-CATCATATAAACCATTGTGCAGTGTCAGACTNTTTATTCCATATTTTGACACTT-CCCTCTAA-GAAGTTCTATA-----CAAG-TGC-CTAGTTATCT---AACNTCCGTTCTATACGG--CGATTNGGAGGGATGACANA-TAA-TATGCTGAAGTT-GTACCCGTTTTC-GT-T-G-ATAGAACGTGTGTTC--ACCGGCG--AC--AAACACAT-CACCATTTAGG-AAA-ATCATCGC-T--GC-ANTG-AATCTAACC-A-CG-ATCGGCCAATAAA-T-TG---T-TA-G-TTT-A-GAGTA-CAGAAAACGGGTGTTGAA-C-NA-G-T--GGGGTAT-------A-TTTCT------AAGATGGCGACTTTCGTCCCCCTTGTAT-TTG-ATTATA--TACA--GT---AN---TTG-AA-GGG-GTGTT-ATTT-AAACG-ATGTGNT------AATGACCAAAAC-----GTGTCGACATCGTTAT--C----AG-A-TGACTTCAAA-----G-GGGA---T-------T--AT---AGAGGAT---TCACA-TTT----T-----ATTAT---TT-TT-TTT---ANT-TTA----C--ACAATCCGGAAGACAA-GCCCCTATG
gi|1 : CCGGATGACACACATTCTATCCAACGAAAACGGGTACAACTCTCAGCATTATTTATCTGTCACGTCGCTCAAATTGCTGTCATTGTA------ACGGAAGT--ATACAAACTAC-AGGAAAATG-TAGAAA--GGAATATTAAAAATCA----CAGCATAATG-GC-AACAGAATAACCCAAAA-T-GTGTTAAAATAATT-TGTGTTTTAT-TTTTGAATTATTAATGCCACAACAGTTAGTACCTTTGTATCTGCTC---TAACCAT--GCTCTGTCATCATATAAACCAT----CAGTATCAGACTGTTTATTCCATATTTT-ACACTT-CCCTCTAATGAAGTTCTATA-----CAAA-TGC-CTAGTTATTTTA-AACTTCCGTTCAATACAG--CGATTGGGAGGGAAGATAGA-TAA-TATGCTGAAGTT-GTACCCGTT--C-GT-T-G-ATATAATGTCTGTTC--ACCGGCG--ACCAAAACA-AT-CACCATTATGG-AAA-ATTTTCGC-T--GC-ATAT-AATCTCACCTA-CG-ATCGGCCAATAAA-T-TT---TATA-G-TTT-A-GAGTA-CAGAAAACAGGTGTTGAA-C-GA-G-T--GGG-TAT-------A-TTTCC------AAGATGGCGACTTTCGTTCCCTTTGTAC-TTGCATTATA--TACACAGT---AT---TTT-AA-GGG-GTGTT-ACTT-AACCG-ATGTGCT------AATGACCAAAAC-----GTGTTGGAATTGTTAT--T----AG-A-TGA-TTCAAA-----GTGGGA---T-------TA-AT---AGAGGAT---TCACA-TTT----C-----ATTAT---TT-TT-TTT---AAT-TTA----C--ACAATCCGGAAGACAACGCCCCTATG
gi|10 : CCAGTTTACACACGTTCTATCAAACGAAAACAGGTGCAACA-TCTACA--ATATATGCATCATCTCGC-CAAGTCG--GTC--TGGA--GAGAACGGAA----G-AC-------------------AGAAATGGAAATATCAAAA-T------GAGGATAATTAGG-AATAGAATAAT-----GTT-TTGTTAAAATAGTT-TGt
gi|11 : tgtttgtcaCTTGTGT-T-G-ATAGGA--TTC----T---AC---TTG-CA-TGGTGTGTC-ATAT-A--TG-GTGCAGT------AATTACCAAAGC-----ATTTCGACATCGTTATC-C----AT-A-CAACCACGAA-----G-GTGA---T-------T---TCCAAGAGGAT---CCACA-TTTTTACT-----ATTAT---TT-TT-TTT---AATCTTAATTCC--ACAATCCGAAAGACca
gi|12 : TTAT--C----AG-AATGACCTCAAA-----G-GAGT---T-------T-------------T---TAACA-TTT----TTATCAATTTT---TT-TTATTT---ATT-TTG----C--ACAATCCGGAATGCAA-GCCCTTATG
gi|13 : ttccttgtaccgacaagtgttgatgatatacttactagaattctgaatt--CGATTTGGTAAGGTGACAGG---A-TTTCTTGATGTT-GTACCTGTTT-C-GT-T-G-ATAGAACGTGTG-TC--AGCCGTG--AC--AAAC-CAT-CAACATTTAGGAAAA-ATTATCGC-TTAAA-AGTG-AATTTAATC-A-CG-Actc
gi|14 : TGTTTGAACAGGTG--AC--AAGTACAT-CATCATTCAGG-AAA-ACCATCGC-T--GC-AGCGAAATCTAACG-A-TA-ATCAA--AATTAA-TATGGACT-TATG-TTT---CATTG-CAGAAA
gi|15 : atctgttttC-----GTGTTGACATCTTT-T--A----AA-A-T--TTTCAA--------GTGA---T-------TTAAT---ACAAGAT---TTGTA-TTT----TC----AACAT---TTATT-TTT---ATT-TTA----C--ACAGTCCGGCAGACAA-GCTCCcg
gi|16 : TGACCAAAAC-----GTGTCAACATCGTTAT--G----AGAA-TGACTTCAAA-----G-GAAATTCT-------T--AT---AGATGAT---TCATG-TTT-----------TCAT---TT-TA-TTT----CT-CTA----C--agtgag
gi|17 : TTTT---TC-TT-TTT---AAT-TTA----C--ACAATCCGGACGACAA-GCCCCTATG
gi|2 : CCGGT-GACACACATTCTATCCAACGAAAACGGGTACAACT-TCAGCAT-ATTTATCTGTCTCCTCGC-CAATTCC--CTC--T-CATTG-GAACGGAAGTGAG-ACAGACTACAGGGAAAATGTTAGAAATGGAAAGATTAAAA-TCAGCGCTAGCATAATT-GGAAACAGAATAAT-----G-TGTTGTT-AAATAATTATGTGTTTTATGTTT-GAATTA---AGGC-ACAAACG-TATAACCTTTGTATTTG-TCAATCAACCATTAGAAC-G-CAGAATGTAGACCATa
gi|2 : CCTCTT--GAAGTTATATATCGAACAGGATACTCTAGTTAGC----AGCATATG--CTATATGG--CGA--AGGATGGAAG---TA-TAA-TATGCTGAAGTTTGTACCCGTTTTC-GT-T-GGATAGAATGTGTGTTC---CCGGCGCAAC--AAACACAT--ACCAGTTAGG-AAA-TT--TCGC-T--GA-ATTA-AAT-TAACC-A-CG-ATCGGCCAATAAA-T-TG---T-TA-GTTTT-G-GAGTA-CAG-AAACGGGTGTTGAA-A-AA-GCT--AGGG-AT-------A-Tctatcacacacaatcagaagagaagtgagactgatgctcacatatgatatatgatcaacgtatgtggtcctcttgaagttatatatcgaacaggatactctagttagcagcatatgctatatggcgaaggatggaagtataatatgctgaagtttgtacccgttttcgttggatagaatgtgtgttcccggcgcaacaaacacataccagttaggaaatttcgctgaattaaattaaccacgatcggccaataaattgttagttttggagtacagaaacgggtgttgaaaaagctagggatat
gi|3 : ccggtgacacacattctatccaacgaaaacgggtacaacttcagcatatttatctgtctcctcgccaattccctctcattggaacggaagtgagacagactacagggaaaatgttagaaatggaaagattaaaatcagcgctagcataattggaaacagaataatgtgttgttaaataattatgtgttttatgtttgaattaaggcacaaacgtataacctttgtatttgtcaatcaaccattagaacgcagaatgtagaccatctatcacacacaatcagaagagaagtgagactgatgctcacatatgatatatgatcaacgtatgtggtTTCCAT-TTCTGACATTT-TCC-CTAA-G----TCTGTA-----CA---TG-------TATC-----ACGTCCGTTCTTTCCAGACCGATTTGGCAAGATAACACA-CAA-T---TTGA---T-GTACCTGTTTTC-GTAT-G-ATAGAAAGTGTGTCA--ACCGGCG--AC--AAACACAT-CGGCACGTAGG-AAA-ATCATTGC-T--GC-ATTG-AATCTAACC-A-CG-ATCAGCCAATGAATT-TC---T-TA-G-TTT-A-GAGTA-CA-AAAACGAGTGTTGAACC-TA-G-TG-GGGGTGT-------ATTTTTT------AAGATGGCGACTTTCGTCC-----ATATATTG-ACT-------TA--GT---AG---TTACAA-GGG-GTGTT-ATTT-TAACG-ATA----------AATAACAAAAAG-----GTATTGACATCGTTAT--C----GGAA-TAAATTCAAA-----G-GGGA---T-------T--TTCTGAGAGAA----TCATACTTT----T-----TTTA-----T-TT-TAT---ATT-TTC----C--ACAATCC
gi|4 : atatTTGCGAGG--TGACAGAATAAATATGCTGAAGTTTGTCCCTGTTTTC-GT-T-G-ATAGAATGTGTGT-C--ACCGGGG--AC--AAACACATTCACCATTTAGG-AAAGATCATCCCCT--GC-AGT--AATCTCATC-AACG-ATCGGCCAATAAA-T-TG---T-TA-G-TTTAA-GAGTA-CAG-AAACGGGTGTTGAA-CTGA-G-TTGGGGGGAT-------A-TTTTC------CAGATGGCGAC-TTCGT--CCCTTGTA--TTG-ATTATAG-TAC----T---AC---TTG-AAGGGG-GTGCT-ATTTAAAACGAATGTGGTG-----AATGACC-AAAC-----GGGTTGGAATTGTTAT--T----AG-AGTTA-TTCAAAGGGGGG-GGGA---TGGGTAAAT--A----AGAGATT---TCACATTTT----T-----ATTATGTATT-TT-TTTTTAAAT-TTA----CAAACAATCCGGAAGA
gi|5 : ttTGACACA-CAA-ATTGTTGATGCT-GTACCTGTTTTCTGT-TTG-ATAGATCGTGTGTCA--ACCGGCG--AC--A----CA--CACCATTTAGG-AAA-ATCATTGG-C--GC-AGTG-GATCTAACC-A-CG-ATCAGCCAATGAA-T-TG---T-TA-G-TGT-A-TAGTA-CAG-AAATGGGTGTTGAACC-TA-G-TG-GGGGTAT-------A-TTTCT------AAGATGGCGACTTTCGT--CCCTGGTA--TTG------A--TGTA--GT---AG---TTA-CA-GGG-GTGTT-ATTC-AAACA-CTGTATA------AATAACC-AGAC-----GTGTTGACATCGTAAT--G----AGAA-TGACTTCAAA-----G-GGGATT-T-------T--CT---AAAGGAA---TTACA-TTT----T-----AT--------------------T-TTC----C--ACAATCCGGAAAAC
gi|6 : -CATCATT-AGG-AAA--TCATCGT-T--GCTGCGG-AATCTAA---A-CGCAT-AATCAATAAA-T-T----T-AA-G-ATT-AGGAGTAGCAGAA-----GTG-TGA-----A-G-T--GAGAT-----------TTTCT------AAT-TGGTGACTTTCTT--TCTTTTTAT-TTG--------------------AA---TTG-A---GA-CTGTT-ATTC-CAATG-ATGT-AT------AATTACTA
gi|7 : tttcagattttagaaaataaagcatcatttttaaaaccccattatgattcgttttcatgatgcaC-A-CG-ATAACCCAATAAC-T-TG---T-AA-G-TTT-A-GTGTT-CAGAAA-CGGGAGTTAAA-C-CAAG-T--GGAGTATTTTTTTTA-TTTTTTTTTTGAAGTTTGTGACTTTTGTCCC--TTGTAC-TT-----ATA--TATA--GTTCTAC---TTG-CA-G---------------AA-G-ATGTATA------AATGACTAAAAC-----ATGTCGTCATCGTTAT--TA---AA-A-TAACCTCTAA-----G-GACAGT-T-------T--AT---AGAGGCTGAATCATA-TTT----
gi|8 : GTAT-TTGGATTATACGTGCA--CT---AAGCTTTA-AT-GGG-CTGTTTACTT-AA-CG-AAGTGATGGCCGTAATGACCAAAACAACTGGTCGCGA-ATTGTTATATCTATAAG-AGTGACTTCAAA-----G-GGGG-------------------GGGGGAT---TGGGA-TTA----G-----CTCAA---TT-TT-TTG---AAT-CTA----
gi|9 : tcccaaattaTTAAAATAATT-TGTATTT-AG-TTT-GAATTA----GGC-ACAACAGTTATAACCTTGTTATT-GCTC---TAACC-----TCCTG-CATCCTATAAAAAATTGTGCAGTG-CAGACTTTTTATTTCATATTTTGACACTTCCCCTCTAA-GAAAATCTATA-----CAA---GC-CTAGTTATTTGTAAACTTCCGTTCCAagttttttccaataatctgg
Alignments
lowQualScore : 1 22 1 11 4444444444 33333333333333333333333333 333333333 1111 4444444444 1 1 1 3333 1 222 22222222222 2222 1 1 11 33333333333333 4444 11 11 1 1111 22222222222 111111111 111111 22222 555555555555555555555555 1111 222222222 11111 222222222222 11111 5555555555555555555 2222222222 1
lowQualScore : 7 0 3 00 0 3 1 88 6666666666 88888888888888888888888888 7 999999999 5555 7777777777 3 0 7 3 3 0000 3 7 7 6 333 55555555555 3333 5 1 7 6 3 3 33 4444 99999999999999 6666 1 3 1 0 33 0 1 22 1 00 999 7 3 0 3 6 6 6 6 2 9999 77 77 1 5 0 2 5 55 0 5 66 5 6666 0 4 4 4 5 5 1111 5 5 5 999 5 9 1 00000000000 11 888888888 999999 3 55555 999999999999999999999999 9999 0000 5 5 5 9 5 888888888 1 11111 1 777777777777 2 4 00000 4 2222222222222222222 777 8 4444444444 0 7777 4 4 77777 4 8888 66 0
lowQualScore : . . . .. . . . .. .......... .......................... . ......... .... .......... . . . . . .... . . . . ... ........... .... . . . . . . .. .... .............. .... . . . . .. . . .. . .. ... . . . . . . . . . .... .. .. . . . . . .. . . .. . .... . . . . . . .... . . . ... . . . ........... .. ......... ...... . ..... ........................ .... .... . . . . . ......... . ..... . ............ . . ..... . ................... ... . .......... . .... . . ..... . .... .. .
lowQualScore : 3 7 3 77 7 3 0 33 3333333333 77777777777777777777777777 3 333333333 0000 0000000000 2 0 3 3 3 7777 3 3 3 7 333 77777777777 5555 5 0 3 7 3 2 22 0000 22222222222222 8888 0 2 2 7 88 8 0 44 0 88 888 8 3 7 2 7 7 7 7 2 6666 99 99 4 0 2 2 0 44 2 0 99 0 5555 2 4 4 4 0 0 2222 0 0 0 000 0 4 4 00000000000 66 777777777 222222 5 44444 111111111111111111111111 8888 4444 0 0 0 2 0 000000000 9 11111 1 555555555555 3 1 00000 0 7777777777777777777 000 0 8888888888 4 9999 0 0 77777 0 5555 11 0
consensus : CCGGTTGACACACGTTCTATCCAACGAAAACGGGTACAACT-TCAGCAT-ATTTATCCGTCACCTCGC-CAANTCG--GTC--TGNA--G-GAACGGAAGT--G-ACAGACTAC-GGGAAAATG-TAGAAATGGAAATATTAAAA-TCA----NAGCATAATT-GG-AACAGAATAAC-----G-T-TTGTTAAAATAATT-TGTGTTTTAT-TTT-GAATTA---AGGC-ACAACAGTTATAACCTTTGTATTTGCTC---TAACCAT--GNNCTG-CATCATATAAACCATTGTGCAGTGTCAGACTNTTTATTCCATATTTTGACACTT-CCCTCTAA-GAAGTTCTATA-----CAAG-TGC-CTAGTTATCT---AACNTCCGTTCTATACGG--CGATTNGGAGGGATGACANA-TAA-TATGCTGAAGTT-GTACCCGTTTTC-GT-T-G-ATAGAACGTGTGTTC--ACCGGCG--AC--AAACACAT-CACCATTTAGG-AAA-ATCATCGC-T--GC-ANTG-AATCTAACC-A-CG-ATCGGCCAATAAA-T-TG---T-TA-G-TTT-A-GAGTA-CAGAAAACGGGTGTTGAA-C-NA-G-T--GGGGTAT-------A-TTTCT------AAGATGGCGACTTTCGTCCCCCTTGTAT-TTG-ATTATA--TACA--G---TAN---TTG-AA-GGG-GTGTT-ATTT-AAACG-ATGTGNT------AATGACCAAAAC-----GTGTCGACATCGTTAT--C----AG-A-TGACTTCAAA-----G-GGGA---T-------T--AT---AGAGGAT---TCACA-TTT----T-----ATTAT---TT-TT-TTT---ANT-TTA----C--ACAATCCGGAAGACAA-GCCCCTATG
Reference ( family-735 ) : CCGGTTGACACACGTTCTATCCAACGAAAACGGGTACAACT-TCAGCAT-ATTTATCCGTCACCTCGC-CAANTCG--GTC--TGNA--G-GAACGGAAGT--G-ACAGACTAC-GGGAAAATG-TAGAAATGGAAATATTAAAA-TCA----NAGCATAATT-GG-AACAGAATAAC-----G-T-TTGTTAAAATAATT-TGTGTTTTAT-TTT-GAATTA---AGGC-ACAACAGTTATAACCTTTGTATTTGCTC---TAACCAT--GNNCTG-CATCATATAAACCATTGTGCAGTGTCAGACTNTTTATTCCATATTTTGACACTT-CCCTCTAA-GAAGTTCTATA-----CAAG-TGC-CTAGTTATCT---AACNTCCGTTCTATACGG--CGATTNGGAGGGATGACANA-TAA-TATGCTGAAGTT-GTACCCGTTTTC-GT-T-G-ATAGAACGTGTGTTC--ACCGGCG--AC--AAACACAT-CACCATTTAGG-AAA-ATCATCGC-T--GC-ANTG-AATCTAACC-A-CG-ATCGGCCAATAAA-T-TG---T-TA-G-TTT-A-GAGTA-CAGAAAACGGGTGTTGAA-C-NA-G-T--GGGGTAT-------A-TTTCT------AAGATGGCGACTTTCGTCCCCCTTGTAT-TTG-ATTATA--TACA--G---TAN---TTG-AA-GGG-GTGTT-ATTT-AAACG-ATGTGNT------AATGACCAAAAC-----GTGTCGACATCGTTAT--C----AG-A-TGACTTCAAA-----G-GGGA---T-------T--AT---AGAGGAT---TCACA-TTT----T-----ATTAT---TT-TT-TTT---ANT-TTA----C--ACAATCCGGAAGACAA-GCCCCTATG
gi|1 : CCGGATGACACACATTCTATCCAACGAAAACGGGTACAACTCTCAGCATTATTTATCTGTCACGTCGCTCAAATTGCTGTCATTGTA------ACGGAAGT--ATACAAACTAC-AGGAAAATG-TAGAAA--GGAATATTAAAAATCA----CAGCATAATG-GC-AACAGAATAACCCAAAA-T-GTGTTAAAATAATT-TGTGTTTTAT-TTTTGAATTATTAATGCCACAACAGTTAGTACCTTTGTATCTGCTC---TAACCAT--GCTCTGTCATCATATAAACCAT----CAGTATCAGACTGTTTATTCCATATTTT-ACACTT-CCCTCTAATGAAGTTCTATA-----CAAA-TGC-CTAGTTATTTTA-AACTTCCGTTCAATACAG--CGATTGGGAGGGAAGATAGA-TAA-TATGCTGAAGTT-GTACCCGTT--C-GT-T-G-ATATAATGTCTGTTC--ACCGGCG--ACCAAAACA-AT-CACCATTATGG-AAA-ATTTTCGC-T--GC-ATAT-AATCTCACCTA-CG-ATCGGCCAATAAA-T-TT---TATA-G-TTT-A-GAGTA-CAGAAAACAGGTGTTGAA-C-GA-G-T--GGG-TAT-------A-TTTCC------AAGATGGCGACTTTCGTTCCCTTTGTAC-TTGCATTATA--TACACAG---TAT---TTT-AA-GGG-GTGTT-ACTT-AACCG-ATGTGCT------AATGACCAAAAC-----GTGTTGGAATTGTTAT--T----AG-A-TGA-TTCAAA-----GTGGGA---T-------TA-AT---AGAGGAT---TCACA-TTT----C-----ATTAT---TT-TT-TTT---AAT-TTA----C--ACAATCCGGAAGACAACGCCCCTATG
gi|10 : CCAGTTTACACACGTTCTATCAAACGAAAACAGGTGCAACA-TCTACA--ATATATGCATCATCTCGC-CAAGTCG--GTC--TGGA--GAGAACGGAA----G-AC-------------------AGAAATGGAAATATCAAAA-T------GAGGATAATTAGG-AATAGAATAAT-----GTT-TTGTTAAAATAGTT-TGt
gi|11 : tgtttgtcaCTTGTGT-T-G-ATAGGA--TTC-------TAC---TTG-CA-TGGTGTGTC-ATAT-A--TG-GTGCAGT------AATTACCAAAGC-----ATTTCGACATCGTTATC-C----AT-A-CAACCACGAA-----G-GTGA---T-------T---TCCAAGAGGAT---CCACA-TTTTTACT-----ATTAT---TT-TT-TTT---AATCTTAATTCC--ACAATCCGAAAGACca
gi|12 : TTAT--C----AG-AATGACCTCAAA-----G-GAGT---T-------T-------------T---TAACA-TTT----TTATCAATTTT---TT-TTATTT---ATT-TTG----C--ACAATCCGGAATGCAA-GCCCTTATG
gi|13 : ttccttgtaccgacaagtgttgatgatatacttactagaattctgaatt--CGATTTGGTAAGGTGACAGG---A-TTTCTTGATGTT-GTACCTGTTT-C-GT-T-G-ATAGAACGTGTG-TC--AGCCGTG--AC--AAAC-CAT-CAACATTTAGGAAAA-ATTATCGC-TTAAA-AGTG-AATTTAATC-A-CG-Actc
gi|14 : TGTTTGAACAGGTG--AC--AAGTACAT-CATCATTCAGG-AAA-ACCATCGC-T--GC-AGCGAAATCTAACG-A-TA-ATCAA--AATTAA-TATGGACT-TATG-TTT---CATTG-CAGAAA
gi|15 : atctgttttC-----GTGTTGACATCTTT-T--A----AA-A-T--TTTCAA--------GTGA---T-------TTAAT---ACAAGAT---TTGTA-TTT----TC----AACAT---TTATT-TTT---ATT-TTA----C--ACAGTCCGGCAGACAA-GCTCCcg
gi|16 : TGACCAAAAC-----GTGTCAACATCGTTAT--G----AGAA-TGACTTCAAA-----G-GAAATTCT-------T--AT---AGATGAT---TCATG-TTT-----------TCAT---TT-TA-TTT----CT-CTA----C--agtgag
gi|17 : TTTT---TC-TT-TTT---AAT-TTA----C--ACAATCCGGACGACAA-GCCCCTATG
gi|2 : CCGGT-GACACACATTCTATCCAACGAAAACGGGTACAACT-TCAGCAT-ATTTATCTGTCTCCTCGC-CAATTCC--CTC--T-CATTG-GAACGGAAGTGAG-ACAGACTACAGGGAAAATGTTAGAAATGGAAAGATTAAAA-TCAGCGCTAGCATAATT-GGAAACAGAATAAT-----G-TGTTGTT-AAATAATTATGTGTTTTATGTTT-GAATTA---AGGC-ACAAACG-TATAACCTTTGTATTTG-TCAATCAACCATTAGAAC-G-CAGAATGTAGACCATa
gi|2 : CCTCTT--GAAGTTATATATCGAACAGGATACTCTAGTTAGC----AGCATATG--CTATATGG--CGA--AGGATGGAAG---TA-TAA-TATGCTGAAGTTTGTACCCGTTTTC-GT-T-GGATAGAATGTGTGTTC---CCGGCGCAAC--AAACACAT--ACCAGTTAGG-AAA-TT--TCGC-T--GA-ATTA-AAT-TAACC-A-CG-ATCGGCCAATAAA-T-TG---T-TA-GTTTT-G-GAGTA-CAG-AAACGGGTGTTGAA-A-AA-GCT--AGGG-AT-------A-Tctatcacacacaatcagaagagaagtgagactgatgctcacatatgatatatgatcaacgtatgtggtcctcttgaagttatatatcgaacaggatactctagttagcagcatatgctatatggcgaaggatggaagtataatatgctgaagtttgtacccgttttcgttggatagaatgtgtgttcccggcgcaacaaacacataccagttaggaaatttcgctgaattaaattaaccacgatcggccaataaattgttagttttggagtacagaaacgggtgttgaaaaagctagggatat
gi|3 : ccggtgacacacattctatccaacgaaaacgggtacaacttcagcatatttatctgtctcctcgccaattccctctcattggaacggaagtgagacagactacagggaaaatgttagaaatggaaagattaaaatcagcgctagcataattggaaacagaataatgtgttgttaaataattatgtgttttatgtttgaattaaggcacaaacgtataacctttgtatttgtcaatcaaccattagaacgcagaatgtagaccatctatcacacacaatcagaagagaagtgagactgatgctcacatatgatatatgatcaacgtatgtggtTTCCAT-TTCTGACATTT-TCC-CTAA-G----TCTGTA-----CA---TG-------TATC-----ACGTCCGTTCTTTCCAGACCGATTTGGCAAGATAACACA-CAA-T---TTGA---T-GTACCTGTTTTC-GTAT-G-ATAGAAAGTGTGTCA--ACCGGCG--AC--AAACACAT-CGGCACGTAGG-AAA-ATCATTGC-T--GC-ATTG-AATCTAACC-A-CG-ATCAGCCAATGAATT-TC---T-TA-G-TTT-A-GAGTA-CA-AAAACGAGTGTTGAACC-TA-G-TG-GGGGTGT-------ATTTTTT------AAGATGGCGACTTTCGTCC-----ATATATTG-ACT-------TA--G---TAG---TTACAA-GGG-GTGTT-ATTT-TAACG-ATA----------AATAACAAAAAG-----GTATTGACATCGTTAT--C----GGAA-TAAATTCAAA-----G-GGGA---T-------T--TTCTGAGAGAA----TCATACTTT----T-----TTTA-----T-TT-TAT---ATT-TTC----C--ACAATCC
gi|4 : atatTTGCGAGG--TGACAGAATAAATATGCTGAAGTTTGTCCCTGTTTTC-GT-T-G-ATAGAATGTGTGT-C--ACCGGGG--AC--AAACACATTCACCATTTAGG-AAAGATCATCCCCT--GC-AGT--AATCTCATC-AACG-ATCGGCCAATAAA-T-TG---T-TA-G-TTTAA-GAGTA-CAG-AAACGGGTGTTGAA-CTGA-G-TTGGGGGGAT-------A-TTTTC------CAGATGGCGAC-TTCGT--CCCTTGTA--TTG-ATTATAG-TAC-------TAC---TTG-AAGGGG-GTGCT-ATTTAAAACGAATGTGGTG-----AATGACC-AAAC-----GGGTTGGAATTGTTAT--T----AG-AGTTA-TTCAAAGGGGGG-GGGA---TGGGTAAAT--A----AGAGATT---TCACATTTT----T-----ATTATGTATT-TT-TTTTTAAAT-TTA----CAAACAATCCGGAAGA
gi|5 : ttTGACACA-CAA-ATTGTTGATGCT-GTACCTGTTTTCTGT-TTG-ATAGATCGTGTGTCA--ACCGGCG--AC--A----CA--CACCATTTAGG-AAA-ATCATTGG-C--GC-AGTG-GATCTAACC-A-CG-ATCAGCCAATGAA-T-TG---T-TA-G-TGT-A-TAGTA-CAG-AAATGGGTGTTGAACC-TA-G-TG-GGGGTAT-------A-TTTCT------AAGATGGCGACTTTCGT--CCCTGGTA--TTG------A--TGTA--G---TAG---TTA-CA-GGG-GTGTT-ATTC-AAACA-CTGTATA------AATAACC-AGAC-----GTGTTGACATCGTAAT--G----AGAA-TGACTTCAAA-----G-GGGATT-T-------T--CT---AAAGGAA---TTACA-TTT----T-----AT--------------------T-TTC----C--ACAATCCGGAAAAC
gi|6 : -CATCATT-AGG-AAA--TCATCGT-T--GCTGCGG-AATCTAA---A-CGCAT-AATCAATAAA-T-T----T-AA-G-ATT-AGGAGTAGCAGAA-----GTG-TGA-----A-G-T--GAGAT-----------TTTCT------AAT-TGGTGACTTTCTT--TCTTTTTAT-TTG--------------------AA---TTG-A---GA-CTGTT-ATTC-CAATG-ATGT-AT------AATTACTA
gi|7 : tttcagattttagaaaataaagcatcatttttaaaaccccattatgattcgttttcatgatgcaC-A-CG-ATAACCCAATAAC-T-TG---T-AA-G-TTT-A-GTGTT-CAGAAA-CGGGAGTTAAA-C-CAAG-T--GGAGTATTTTTTTTA-TTTTTTTTTTGAAGTTTGTGACTTTTGTCCC--TTGTAC------TTATA--TATA--GTTCTAC---TTG-CA-G--------------AA--G-ATGTATA------AATGACTAAAAC-----ATGTCGTCATCGTTAT--TA---AA-A-TAACCTCTAA-----G-GACAGT-T-------T--AT---AGAGGCTGAATCATA-TTT----
gi|8 : GTAT-TTGGATTATACGTGCA--C---TAAGCTTTA-AT-GGG-CTGTTTACTT-AA-CG-AAGTGATGGCCGTAATGACCAAAACAACTGGTCGCGA-ATTGTTATATCTATAAG-AGTGACTTCAAA-----G-GGGG-------------------GGGGGAT---TGGGA-TTA----G-----CTCAA---TT-TT-TTG---AAT-CTA----
gi|9 : tcccaaattaTTAAAATAATT-TGTATTT-AG-TTT-GAATTA----GGC-ACAACAGTTATAACCTTGTTATT-GCTC---TAACC-----TCCTG-CATCCTATAAAAAATTGTGCAGTG-CAGACTTTTTATTTCATATTTTGACACTTCCCCTCTAA-GAAAATCTATA-----CAA---GC-CTAGTTATTTGTAAACTTCCGTTCCAagttttttccaataatctgg
Alignments
lowQualScore : 1 22 1 11 4444444444 33333333333333333333333333 333333333 1111 4444444444 1 1 1 3333 1 222 22222222222 2222 1 1 11 33333333333333 4444 11 11 1 1111 22222222222 111111111 111111 22222 555555555555555555555555 1111 222222222 11111 222222222222 11111 5555555555555555555 2222222222 1
lowQualScore : 7 0 3 00 0 3 1 88 6666666666 88888888888888888888888888 7 999999999 5555 7777777777 3 0 7 3 3 0000 3 7 7 6 333 55555555555 3333 5 1 7 6 3 3 33 4444 99999999999999 6666 1 3 1 0 33 0 1 22 1 00 999 7 3 0 3 6 6 6 6 2 9999 77 77 1 5 0 2 5 55 0 5 66 5 6666 0 4 4 4 5 5 1111 5 5 5 999 5 9 1 00000000000 11 888888888 999999 3 55555 999999999999999999999999 9999 0000 5 5 5 9 5 888888888 1 11111 1 777777777777 2 4 00000 4 2222222222222222222 777 8 4444444444 0 7777 4 4 77777 4 8888 66 0
lowQualScore : . . . .. . . . .. .......... .......................... . ......... .... .......... . . . . . .... . . . . ... ........... .... . . . . . . .. .... .............. .... . . . . .. . . .. . .. ... . . . . . . . . . .... .. .. . . . . . .. . . .. . .... . . . . . . .... . . . ... . . . ........... .. ......... ...... . ..... ........................ .... .... . . . . . ......... . ..... . ............ . . ..... . ................... ... . .......... . .... . . ..... . .... .. .
lowQualScore : 3 7 3 77 7 3 0 33 3333333333 77777777777777777777777777 3 333333333 0000 0000000000 2 0 3 3 3 7777 3 3 3 7 333 77777777777 5555 5 0 3 7 3 2 22 0000 22222222222222 8888 0 2 2 7 88 8 0 44 0 88 888 8 3 7 2 7 7 7 7 2 6666 99 99 4 0 2 2 0 44 2 0 99 0 5555 2 4 4 4 0 0 2222 0 0 0 000 0 4 4 00000000000 66 777777777 222222 5 44444 111111111111111111111111 8888 4444 0 0 0 2 0 000000000 9 11111 1 555555555555 3 1 00000 0 7777777777777777777 000 0 8888888888 4 9999 0 0 77777 0 5555 11 0
consensus : CCGGTTGACACACGTTCTATCCAACGAAAACGGGTACAACT-TCAGCAT-ATTTATCCGTCACCTCGC-CAANTCG--GTC--TGNA--G-GAACGGAAGT--G-ACAGACTAC-GGGAAAATG-TAGAAATGGAAATATTAAAA-TCA----NAGCATAATT-GG-AACAGAATAAC-----G-T-TTGTTAAAATAATT-TGTGTTTTAT-TTT-GAATTA---AGGC-ACAACAGTTATAACCTTTGTATTTGCTC---TAACCAT--GNNCTG-CATCATATAAACCATTGTGCAGTGTCAGACTNTTTATTCCATATTTTGACACTT-CCCTCTAA-GAAGTTCTATA-----CAAG-TGC-CTAGTTATCT---AACNTCCGTTCTATACGG--CGATTNGGAGGGATGACANA-TAA-TATGCTGAAGTT-GTACCCGTTTTC-GT-T-G-ATAGAACGTGTGTTC--ACCGGCG--AC--AAACACAT-CACCATTTAGG-AAA-ATCATCGC-T--GC-ANTG-AATCTAACC-A-CG-ATCGGCCAATAAA-T-TG---T-TA-G-TTT-A-GAGTA-CAGAAAACGGGTGTTGAA-C-NA-G-T--GGGGTAT-------A-TTTCT------AAGATGGCGACTTTCGTCCCCCTTGTAT-TTG-ATTATA--TACA--G---TAN---TTG-AA-GGG-GTGTT-ATTT-AAACG-ATGTGNT------AATGACCAAAAC-----GTGTCGACATCGTTAT--C----AG-A-TGACTTCAAA-----G-GGGA---T-------T--AT---AGAGGAT---TCACA-TTT----T-----ATTAT---TT-TT-TTT---ANT-TTA----C--ACAATCCGGAAGACAA-GCCCCTATG
Reference ( family-735 ) : CCGGTTGACACACGTTCTATCCAACGAAAACGGGTACAACT-TCAGCAT-ATTTATCCGTCACCTCGC-CAANTCG--GTC--TGNA--G-GAACGGAAGT--G-ACAGACTAC-GGGAAAATG-TAGAAATGGAAATATTAAAA-TCA----NAGCATAATT-GG-AACAGAATAAC-----G-T-TTGTTAAAATAATT-TGTGTTTTAT-TTT-GAATTA---AGGC-ACAACAGTTATAACCTTTGTATTTGCTC---TAACCAT--GNNCTG-CATCATATAAACCATTGTGCAGTGTCAGACTNTTTATTCCATATTTTGACACTT-CCCTCTAA-GAAGTTCTATA-----CAAG-TGC-CTAGTTATCT---AACNTCCGTTCTATACGG--CGATTNGGAGGGATGACANA-TAA-TATGCTGAAGTT-GTACCCGTTTTC-GT-T-G-ATAGAACGTGTGTTC--ACCGGCG--AC--AAACACAT-CACCATTTAGG-AAA-ATCATCGC-T--GC-ANTG-AATCTAACC-A-CG-ATCGGCCAATAAA-T-TG---T-TA-G-TTT-A-GAGTA-CAGAAAACGGGTGTTGAA-C-NA-G-T--GGGGTAT-------A-TTTCT------AAGATGGCGACTTTCGTCCCCCTTGTAT-TTG-ATTATA--TACA--G---TAN---TTG-AA-GGG-GTGTT-ATTT-AAACG-ATGTGNT------AATGACCAAAAC-----GTGTCGACATCGTTAT--C----AG-A-TGACTTCAAA-----G-GGGA---T-------T--AT---AGAGGAT---TCACA-TTT----T-----ATTAT---TT-TT-TTT---ANT-TTA----C--ACAATCCGGAAGACAA-GCCCCTATG
gi|1 : CCGGATGACACACATTCTATCCAACGAAAACGGGTACAACTCTCAGCATTATTTATCTGTCACGTCGCTCAAATTGCTGTCATTGTA------ACGGAAGT--ATACAAACTAC-AGGAAAATG-TAGAAA--GGAATATTAAAAATCA----CAGCATAATG-GC-AACAGAATAACCCAAAA-T-GTGTTAAAATAATT-TGTGTTTTAT-TTTTGAATTATTAATGCCACAACAGTTAGTACCTTTGTATCTGCTC---TAACCAT--GCTCTGTCATCATATAAACCAT----CAGTATCAGACTGTTTATTCCATATTTT-ACACTT-CCCTCTAATGAAGTTCTATA-----CAAA-TGC-CTAGTTATTTTA-AACTTCCGTTCAATACAG--CGATTGGGAGGGAAGATAGA-TAA-TATGCTGAAGTT-GTACCCGTT--C-GT-T-G-ATATAATGTCTGTTC--ACCGGCG--ACCAAAACA-AT-CACCATTATGG-AAA-ATTTTCGC-T--GC-ATAT-AATCTCACCTA-CG-ATCGGCCAATAAA-T-TT---TATA-G-TTT-A-GAGTA-CAGAAAACAGGTGTTGAA-C-GA-G-T--GGG-TAT-------A-TTTCC------AAGATGGCGACTTTCGTTCCCTTTGTAC-TTGCATTATA--TACACAG---TAT---TTT-AA-GGG-GTGTT-ACTT-AACCG-ATGTGCT------AATGACCAAAAC-----GTGTTGGAATTGTTAT--T----AG-A-TGA-TTCAAA-----GTGGGA---T-------TA-AT---AGAGGAT---TCACA-TTT----C-----ATTAT---TT-TT-TTT---AAT-TTA----C--ACAATCCGGAAGACAACGCCCCTATG
gi|10 : CCAGTTTACACACGTTCTATCAAACGAAAACAGGTGCAACA-TCTACA--ATATATGCATCATCTCGC-CAAGTCG--GTC--TGGA--GAGAACGGAA----G-AC-------------------AGAAATGGAAATATCAAAA-T------GAGGATAATTAGG-AATAGAATAAT-----GTT-TTGTTAAAATAGTT-TGt
gi|11 : tgtttgtcaCTTGTGT-T-G-ATAGGA--TTC-------TAC---TTG-CA-TGGTGTGTC-ATAT-A--TG-GTGCAGT------AATTACCAAAGC-----ATTTCGACATCGTTATC-C----AT-A-CAACCACGAA-----G-GTGA---T-------T---TCCAAGAGGAT---CCACA-TTTTTACT-----ATTAT---TT-TT-TTT---AATCTTAATTCC--ACAATCCGAAAGACca
gi|12 : TTAT--C----AG-AATGACCTCAAA-----G-GAGT---T-------T-------------T---TAACA-TTT----TTATCAATTTT---TT-TTATTT---ATT-TTG----C--ACAATCCGGAATGCAA-GCCCTTATG
gi|13 : ttccttgtaccgacaagtgttgatgatatacttactagaattctgaatt--CGATTTGGTAAGGTGACAGG---A-TTTCTTGATGTT-GTACCTGTTT-C-GT-T-G-ATAGAACGTGTG-TC--AGCCGTG--AC--AAAC-CAT-CAACATTTAGGAAAA-ATTATCGC-TTAAA-AGTG-AATTTAATC-A-CG-Actc
gi|14 : TGTTTGAACAGGTG--AC--AAGTACAT-CATCATTCAGG-AAA-ACCATCGC-T--GC-AGCGAAATCTAACG-A-TA-ATCAA--AATTAA-TATGGACT-TATG-TTT---CATTG-CAGAAA
gi|15 : atctgttttC-----GTGTTGACATCTTT-T--A----AA-A-T--TTTCAA--------GTGA---T-------TTAAT---ACAAGAT---TTGTA-TTT----TC----AACAT---TTATT-TTT---ATT-TTA----C--ACAGTCCGGCAGACAA-GCTCCcg
gi|16 : TGACCAAAAC-----GTGTCAACATCGTTAT--G----AGAA-TGACTTCAAA-----G-GAAATTCT-------T--AT---AGATGAT---TCATG-TTT-----------TCAT---TT-TA-TTT----CT-CTA----C--agtgag
gi|17 : TTTT---TC-TT-TTT---AAT-TTA----C--ACAATCCGGACGACAA-GCCCCTATG
gi|2 : CCGGT-GACACACATTCTATCCAACGAAAACGGGTACAACT-TCAGCAT-ATTTATCTGTCTCCTCGC-CAATTCC--CTC--T-CATTG-GAACGGAAGTGAG-ACAGACTACAGGGAAAATGTTAGAAATGGAAAGATTAAAA-TCAGCGCTAGCATAATT-GGAAACAGAATAAT-----G-TGTTGTT-AAATAATTATGTGTTTTATGTTT-GAATTA---AGGC-ACAAACG-TATAACCTTTGTATTTG-TCAATCAACCATTAGAAC-G-CAGAATGTAGACCATa
gi|2 : CCTCTT--GAAGTTATATATCGAACAGGATACTCTAGTTAGC----AGCATATG--CTATATGG--CGA--AGGATGGAAG---TA-TAA-TATGCTGAAGTTTGTACCCGTTTTC-GT-T-GGATAGAATGTGTGTTC---CCGGCGCAAC--AAACACAT--ACCAGTTAGG-AAA-TT--TCGC-T--GA-ATTA-AAT-TAACC-A-CG-ATCGGCCAATAAA-T-TG---T-TA-GTTTT-G-GAGTA-CAG-AAACGGGTGTTGAA-A-AA-GCT--AGGG-AT-------A-Tctatcacacacaatcagaagagaagtgagactgatgctcacatatgatatatgatcaacgtatgtggtcctcttgaagttatatatcgaacaggatactctagttagcagcatatgctatatggcgaaggatggaagtataatatgctgaagtttgtacccgttttcgttggatagaatgtgtgttcccggcgcaacaaacacataccagttaggaaatttcgctgaattaaattaaccacgatcggccaataaattgttagttttggagtacagaaacgggtgttgaaaaagctagggatat
gi|3 : ccggtgacacacattctatccaacgaaaacgggtacaacttcagcatatttatctgtctcctcgccaattccctctcattggaacggaagtgagacagactacagggaaaatgttagaaatggaaagattaaaatcagcgctagcataattggaaacagaataatgtgttgttaaataattatgtgttttatgtttgaattaaggcacaaacgtataacctttgtatttgtcaatcaaccattagaacgcagaatgtagaccatctatcacacacaatcagaagagaagtgagactgatgctcacatatgatatatgatcaacgtatgtggtTTCCAT-TTCTGACATTT-TCC-CTAA-G----TCTGTA-----CA---TG-------TATC-----ACGTCCGTTCTTTCCAGACCGATTTGGCAAGATAACACA-CAA-T---TTGA---T-GTACCTGTTTTC-GTAT-G-ATAGAAAGTGTGTCA--ACCGGCG--AC--AAACACAT-CGGCACGTAGG-AAA-ATCATTGC-T--GC-ATTG-AATCTAACC-A-CG-ATCAGCCAATGAATT-TC---T-TA-G-TTT-A-GAGTA-CA-AAAACGAGTGTTGAACC-TA-G-TG-GGGGTGT-------ATTTTTT------AAGATGGCGACTTTCGTCC-----ATATATTG-ACT-------TA--G---TAG---TTACAA-GGG-GTGTT-ATTT-TAACG-ATA----------AATAACAAAAAG-----GTATTGACATCGTTAT--C----GGAA-TAAATTCAAA-----G-GGGA---T-------T--TTCTGAGAGAA----TCATACTTT----T-----TTTA-----T-TT-TAT---ATT-TTC----C--ACAATCC
gi|4 : atatTTGCGAGG--TGACAGAATAAATATGCTGAAGTTTGTCCCTGTTTTC-GT-T-G-ATAGAATGTGTGT-C--ACCGGGG--AC--AAACACATTCACCATTTAGG-AAAGATCATCCCCT--GC-AGT--AATCTCATC-AACG-ATCGGCCAATAAA-T-TG---T-TA-G-TTTAA-GAGTA-CAG-AAACGGGTGTTGAA-CTGA-G-TTGGGGGGAT-------A-TTTTC------CAGATGGCGAC-TTCGT--CCCTTGTA--TTG-ATTATAG-TAC-------TAC---TTG-AAGGGG-GTGCT-ATTTAAAACGAATGTGGTG-----AATGACC-AAAC-----GGGTTGGAATTGTTAT--T----AG-AGTTA-TTCAAAGGGGGG-GGGA---TGGGTAAAT--A----AGAGATT---TCACATTTT----T-----ATTATGTATT-TT-TTTTTAAAT-TTA----CAAACAATCCGGAAGA
gi|5 : ttTGACACA-CAA-ATTGTTGATGCT-GTACCTGTTTTCTGT-TTG-ATAGATCGTGTGTCA--ACCGGCG--AC--A----CA--CACCATTTAGG-AAA-ATCATTGG-C--GC-AGTG-GATCTAACC-A-CG-ATCAGCCAATGAA-T-TG---T-TA-G-TGT-A-TAGTA-CAG-AAATGGGTGTTGAACC-TA-G-TG-GGGGTAT-------A-TTTCT------AAGATGGCGACTTTCGT--CCCTGGTA--TTG------A--TGTA--G---TAG---TTA-CA-GGG-GTGTT-ATTC-AAACA-CTGTATA------AATAACC-AGAC-----GTGTTGACATCGTAAT--G----AGAA-TGACTTCAAA-----G-GGGATT-T-------T--CT---AAAGGAA---TTACA-TTT----T-----AT--------------------T-TTC----C--ACAATCCGGAAAAC
gi|6 : -CATCATT-AGG-AAA--TCATCGT-T--GCTGCGG-AATCTAA---A-CGCAT-AATCAATAAA-T-T----T-AA-G-ATT-AGGAGTAGCAGAA-----GTG-TGA-----A-G-T--GAGAT-----------TTTCT------AAT-TGGTGACTTTCTT--TCTTTTTAT-TTG--------------------AA---TTG-A---GA-CTGTT-ATTC-CAATG-ATGT-AT------AATTACTA
gi|7 : tttcagattttagaaaataaagcatcatttttaaaaccccattatgattcgttttcatgatgcaC-A-CG-ATAACCCAATAAC-T-TG---T-AA-G-TTT-A-GTGTT-CAGAAA-CGGGAGTTAAA-C-CAAG-T--GGAGTATTTTTTTTA-TTTTTTTTTTGAAGTTTGTGACTTTTGTCCC--TTGTAC------TTATA--TATA--GTTCTAC---TTG-CA-G--------------AA--G-ATGTATA------AATGACTAAAAC-----ATGTCGTCATCGTTAT--TA---AA-A-TAACCTCTAA-----G-GACAGT-T-------T--AT---AGAGGCTGAATCATA-TTT----
gi|8 : GTAT-TTGGATTATACGTGCA--C---TAAGCTTTA-AT-GGG-CTGTTTACTT-AA-CG-AAGTGATGGCCGTAATGACCAAAACAACTGGTCGCGA-ATTGTTATATCTATAAG-AGTGACTTCAAA-----G-GGGG-------------------GGGGGAT---TGGGA-TTA----G-----CTCAA---TT-TT-TTG---AAT-CTA----
gi|9 : tcccaaattaTTAAAATAATT-TGTATTT-AG-TTT-GAATTA----GGC-ACAACAGTTATAACCTTGTTATT-GCTC---TAACC-----TCCTG-CATCCTATAAAAAATTGTGCAGTG-CAGACTTTTTATTTCATATTTTGACACTTCCCCTCTAA-GAAAATCTATA-----CAA---GC-CTAGTTATTTGTAAACTTCCGTTCCAagttttttccaataatctgg
blockSeqs : T . T . G . TGGAGA GTGAGACAGACTACAGGGAAAATGT T TCAGCGCT AGG TGTT A A T G . A . T T C AAT ATTAGAACG TGTG . T A G C T A AAGT TCGAACAGGATACT TGTA A T T AC T TA G AT ATA T T T T A T G C TTGA CA . A T T A GA C TA T GCGA . A C T A GGAC . T T AA G A A CTGAGTTG TG TTTTTTTA TTTTTG A CCC TTTGGATTATACGTGCAC AGCT CAA T T A A A GATGGCCGT A AACTG C ATCTATAAGAG A C GGGGG . TGGGTAAATA GAA C TTATCA TGTA A A TTAAA C ATTC AA .
blockSeqs : . . . . T . TCATTG GAC T TG GGA TGTG A . . . . . . . . . . TCCTG . G . T A AAAA CAAGC . G T T . A AT T T TT A T T . . . . T TC . . A . C . A . . . GTG . . . . . G . . . AG . A A CCTAGTG GA AT . A CCC CTTATATATAGTTC C AAG . . . A . GGTG A . C CCATA G C . . TTCTTAT . T TTACT T . . AA . . . .
blockSeqs : . . . . . CATG . T . C . T CA C C TA A . T . . . . A TC . . A . T . A . . . TTA . . . . . C . . . G . A A CCTAGTG TA A . A TCT TTGATTATAGTAC G CA . . . A . AGT A . C CAGAA G T . . TTTTCTG . . TC T . . AT . . . .
blockSeqs : G AG G C AT T . T . . . . T CA . . A . T . T . . . TTG . . . . . G . . . A . A A AAAGCT TA A . T CCC TTGATAGGATTC C CA . . . A . ATA A . C GAGAA A C . . TTTCCA . . T T . . AT . . .
blockSeqs : C . T . . . . . . . C CA . . . . T . A . . . GTG . . . . . G . . . A . . . CCAAGT A A . . CC TATTGACTTAG G CA . . . . . ATA A . A CGGAA T A . . TTTAAT . . T T . . AA . . .
blockSeqs : C . . . . T . A . . . CGG . . . . . G . . . A . . . AGT T . TTGATGTAG A AT . . . . . AT A . C TAGAG G C . . TTTTCT . . T T . . AT . . .
blockSeqs : . . . . . . . GT . . . . . . . . . . . . TTTG C A . . . . . . . . C GAGAA A C . . GTTTAT . . G A . . AA . . .
blockSeqs : . . . . . . TAAAA G C . . TT . . . . . . C . . .
blockSeqs : AAAA . . . . . . . . . . . . .
blockSeqCons : ** CCAGTG***** CCC** CAGAA******* TTTNAT*************
originalCons : CCGGTTGACACACGTTCTATCCAACGAAAACGGGTACAACT-TCAGCAT-ATTTATCCGTCACCTCGC-CAANTCG--GTC--TGNA--G-GAACGGAAGT--G-ACAGACTAC-GGGAAAATG-TAGAAATGGAAATATTAAAA-TCA----NAGCATAATT-GG-AACAGAATAAC-----G-T-TTGTTAAAATAATT-TGTGTTTTAT-TTT-GAATTA---AGGC-ACAACAGTTATAACCTTTGTATTTGCTC---TAACCAT--GNNCTG-CATCATATAAACCATTGTGCAGTGTCAGACTNTTTATTCCATATTTTGACACTT-CCCTCTAA-GAAGTTCTATA-----CAAG-TGC-CTAGTTATCT---AACNTCCGTTCTATACGG--CGATTNGGAGGGATGACANA-TAA-TATGCTGAAGTT-GTACCCGTTTTC-GT-T-G-ATAGAACGTGTGTTC--ACCGGCG--AC--AAACACAT-CACCATTTAGG-AAA-ATCATCGC-T--GC-ANTG-AATCTAACC-A-CG-ATCGGCCAATAAA-T-TG---T-TA-G-TTT-A-GAGTA-CAGAAAACGGGTGTTGAA-C-NA-G-T--GGGGTAT-------A-TTTCT------AAGATGGCGACTTTCGTCCCCCTTGTAT-TTG-ATTATA--TACA--G---TAN---TTG-AA-GGG-GTGTT-ATTT-AAACG-ATGTGNT------AATGACCAAAAC-----GTGTCGACATCGTTAT--C----AG-A-TGACTTCAAA-----G-GGGA---T-------T--AT---AGAGGAT---TCACA-TTT----T-----ATTAT---TT-TT-TTT---ANT-TTA----C--ACAATCCGGAAGACAA-GCCCCTATG
finalCons : CCGGTTGACACACGTTCTATCCAACGAAAACGGGTACAACT-TCAGCAT-ATTTATCCGTCACCTCGC-CAANTCG--GTC--TGNA--G-GAACGGAAGT--G-ACAGACTAC-GGGAAAATG-TAGAAATGGAAATATTAAAA-TCA----NAGCATAATT-GG-AACAGAATAAC-----G-T-TTGTTAAAATAATT-TGTGTTTTAT-TTT-GAATTA---AGGC-ACAACAGTTATAACCTTTGTATTTGCTC---TAACCAT--GNNCTG-CATCATATAAACCATTGTGCAGTGTCAGACTNTTTATTCCATATTTTGACACTT-CCCTCTAA-GAAGTTCTATA-----CAAG-TGC-CTAGTTATCT---AACNTCCGTTCTATACGG--CGATTNGGAGGGATGACANA-TAA-TATGCTGAAGTT-GTACCCGTTTTC-GT-T-G-ATAGAACGTGTGTTC--ACCGGCG--AC--AAACACAT-CACCATTTAGG-AAA-ATCATCGC-T--GC-ANTG-AATCTAACC-A-CG-ATCGGCCAATAAA-T-TG---T-TA-G-TTT-A-GAGTA-CAGAAAACGGGTGTTGAACCAGTG-----GGGGTAT-------A-TTTCT------AAGATGGCGACTTTCGTCCC--TTGTAT-TTG-ATTATA--TACA--G---TAN---TTG-AA-GGG-GTGTT-ATTT-AAACG-ATGTGNT------AATGACCAAAAC-----GTGTCGACATCGTTATCAGAA-------TGACTTCAAA-----G-GGGATTTNAT-------------AGAGGAT---TCACA-TTT----T-----ATTAT---TT-TT-TTT---ANT-TTA----C--ACAATCCGGAAGACAA-GCCCCTATG
Alignments
lowQualScore : 1 22 1 11 4444444444 33333333333333333333333333 333333333 1111 4444444444 1 1 1 3333 1 222 22222222222 2222 1 1 11 33333333333333 4444 11 11 1 11 1111 1111 2222222 11 222222222 111111 555555555555555555555555 1111 222222222 11111 1111111 111111 2222222222 1
lowQualScore : 7 0 3 00 0 3 1 88 6666666666 88888888888888888888888888 7 999999999 5555 7777777777 3 0 7 3 3 0000 3 7 7 6 333 55555555555 3333 5 1 7 6 3 3 33 4444 99999999999999 6666 1 3 1 0 33 0 1 22 1 00 999 7 3 0 3 6 6 6 6 2 9999 77 77 1 5 0 2 5 11 0 5 66 1111 4 4 5 5 1111 5 5 5 5555 5 9 1 2222222 00 444444444 999999 3 77 666666666666666666666666 9999 0000 5 5 5 9 5 888888888 1 00000 0 5555555 1 5 3 99999 3 777 000000 7777 8 2222222222 777 4 4 99999 4 9999 66 0
lowQualScore : . . . .. . . . .. .......... .......................... . ......... .... .......... . . . . . .... . . . . ... ........... .... . . . . . . .. .... .............. .... . . . . .. . . .. . .. ... . . . . . . . . . .... .. .. . . . . . .. . . .. .... . . . . .... . . . .... . . . ....... .. ......... ...... . .. ........................ .... .... . . . . . ......... . ..... . ....... . . . ..... . ... ...... .... . .......... ... . . ..... . .... .. .
lowQualScore : 3 7 3 77 7 3 0 33 3333333333 77777777777777777777777777 3 333333333 0000 0000000000 2 0 3 3 3 7777 3 3 3 7 333 77777777777 5555 5 0 3 7 3 2 22 0000 22222222222222 8888 0 2 2 7 88 8 0 44 0 88 888 8 3 7 2 7 7 7 7 2 6666 99 99 4 0 2 2 0 99 2 0 99 4444 4 4 0 0 2222 0 0 0 2222 0 4 4 4444444 99 444444444 222222 5 99 111111111111111111111111 8888 4444 0 0 0 2 0 000000000 9 00000 5 4444444 2 1 6 11111 6 000 888888 9999 0 2222222222 888 4 4 44444 4 4444 11 0
consensus : CCGGTTGACACACGTTCTATCCAACGAAAACGGGTACAACT-TCAGCAT-ATTTATCCGTCACCTCGC-CAANTCG--GTC--TGNA--G-GAACGGAAGT--G-ACAGACTAC-GGGAAAATG-TAGAAATGGAAATATTAAAA-TCA----NAGCATAATT-GG-AACAGAATAAC-----G-T-TTGTTAAAATAATT-TGTGTTTTAT-TTT-GAATTA---AGGC-ACAACAGTTATAACCTTTGTATTTGCTC---TAACCAT--GNNCTG-CATCATATAAACCATTGTGCAGTGTCAGACTNTTTATTCCATATTTTGACACTT-CCCTCTAA-GAAGTTCTATA-----CAAG-TGC-CTAGTTATCT---AACNTCCGTTCTATACGG--CGATTNGGAGGGATGACANA-TAA-TATGCTGAAGTT-GTACCCGTTTTC-GT-T-G-ATAGAACGTGTGTTC--ACCGGCG--AC--AAACACAT-CACCATTTAGG-AAA--ATCATCGC-T--GCAGTG-AATCTAACC-A-CGATCGGCCAATAAA-T-TG---T-TA-G-TTT-AG-AGTA-CAGAAAACGGGTGTTGAACC-A-G-TGGGGGTAT-------A-TTTCT------AAGATGGCGACTTTCGTCCC--TTGTAT-TTG-ATTATA--TACA--G---TAN---TTG-AA-GGG-GTGTT-ATTT-AAACG-ATGTGNT------AATGACCAAAAC-----GTGTCGACATCGTTAT--C----AGAATGACTTCA-AA-----G-GGGAT---T-TTAT-AGAGGAT---TCACA-TTT----T-----ATTAT---TT-TT-TTT---ANT-TTA----C--ACAATCCGGAAGACAA-GCCCCTATG
Reference ( family-735 ) : CCGGTTGACACACGTTCTATCCAACGAAAACGGGTACAACT-TCAGCAT-ATTTATCCGTCACCTCGC-CAANTCG--GTC--TGNA--G-GAACGGAAGT--G-ACAGACTAC-GGGAAAATG-TAGAAATGGAAATATTAAAA-TCA----NAGCATAATT-GG-AACAGAATAAC-----G-T-TTGTTAAAATAATT-TGTGTTTTAT-TTT-GAATTA---AGGC-ACAACAGTTATAACCTTTGTATTTGCTC---TAACCAT--GNNCTG-CATCATATAAACCATTGTGCAGTGTCAGACTNTTTATTCCATATTTTGACACTT-CCCTCTAA-GAAGTTCTATA-----CAAG-TGC-CTAGTTATCT---AACNTCCGTTCTATACGG--CGATTNGGAGGGATGACANA-TAA-TATGCTGAAGTT-GTACCCGTTTTC-GT-T-G-ATAGAACGTGTGTTC--ACCGGCG--AC--AAACACAT-CACCATTTAGG-AAA--ATCATCGC-T--GCANTG-AATCTAACC-A-CGATCGGCCAATAAA-T-TG---T-TA-G-TTT-AG-AGTA-CAGAAAACGGGTGTTGAACC-A-G-TGGGGGTAT-------A-TTTCT------AAGATGGCGACTTTCGTCCC--TTGTAT-TTG-ATTATA--TACA--G---TAN---TTG-AA-GGG-GTGTT-ATTT-AAACG-ATGTGNT------AATGACCAAAAC-----GTGTCGACATCGTTAT--C----AGAATGACTTCA-AA-----G-GGGAT---T-TNAT-AGAGGAT---TCACA-TTT----T-----ATTAT---TT-TT-TTT---ANT-TTA----C--ACAATCCGGAAGACAA-GCCCCTATG
gi|1 : CCGGATGACACACATTCTATCCAACGAAAACGGGTACAACTCTCAGCATTATTTATCTGTCACGTCGCTCAAATTGCTGTCATTGTA------ACGGAAGT--ATACAAACTAC-AGGAAAATG-TAGAAA--GGAATATTAAAAATCA----CAGCATAATG-GC-AACAGAATAACCCAAAA-T-GTGTTAAAATAATT-TGTGTTTTAT-TTTTGAATTATTAATGCCACAACAGTTAGTACCTTTGTATCTGCTC---TAACCAT--GCTCTGTCATCATATAAACCAT----CAGTATCAGACTGTTTATTCCATATTTT-ACACTT-CCCTCTAATGAAGTTCTATA-----CAAA-TGC-CTAGTTATTTTA-AACTTCCGTTCAATACAG--CGATTGGGAGGGAAGATAGA-TAA-TATGCTGAAGTT-GTACCCGTT--C-GT-T-G-ATATAATGTCTGTTC--ACCGGCG--ACCAAAACA-AT-CACCATTATGG-AAA--ATTTTCGC-T--GCATAT-AATCTCACCTA-CGATCGGCCAATAAA-T-TT---TATA-G-TTT-AG-AGTA-CAGAAAACAGGTGTTGAACG-A-G-TGGG--TAT-------A-TTTCC------AAGATGGCGACTTTCGTTCCCTTTGTAC-TTGCATTATA--TACACAG---TAT---TTT-AA-GGG-GTGTT-ACTT-AACCG-ATGTGCT------AATGACCAAAAC-----GTGTTGGAATTGTTAT--T----AGA-TGA-TTCA-AA-----GTGGGAT---T--AAT-AGAGGAT---TCACA-TTT----C-----ATTAT---TT-TT-TTT---AAT-TTA----C--ACAATCCGGAAGACAACGCCCCTATG
gi|10 : CCAGTTTACACACGTTCTATCAAACGAAAACAGGTGCAACA-TCTACA--ATATATGCATCATCTCGC-CAAGTCG--GTC--TGGA--GAGAACGGAA----G-AC-------------------AGAAATGGAAATATCAAAA-T------GAGGATAATTAGG-AATAGAATAAT-----GTT-TTGTTAAAATAGTT-TGt
gi|11 : tgtttgtcaC--TTGTGT-T-G-ATAGGA--TTC-------TAC---TTG-CA-TGGTGTGTC-ATAT-A--TG-GTGCAGT------AATTACCAAAGC-----ATTTCGACATCGTTAT--C----CATACAACCACG-AA-----G-GTGAT---T-TCCA-AGAGGAT---CCACA-TTTTTACT-----ATTAT---TT-TT-TTT---AATCTTAATTCC--ACAATCCGAAAGACca
gi|12 : TTAT--C----AGAATGACCTCA-AA-----G-GAGTT---T-TTA--------------ACA-TTT----TTATCAATTTT---TT-TTATTT---ATT-TTG----C--ACAATCCGGAATGCAA-GCCCTTATG
gi|13 : ttccttgtaccgacaagtgttgatgatatacttactagaattctgaatt--CGATTTGGTAAGGTGACAGG---A-TTTCTTGATGTT-GTACCTGTTT-C-GT-T-G-ATAGAACGTGTG-TC--AGCCGTG--AC--AAAC-CAT-CAACATTTAGGAAAA--ATTATCGC-TTAAAAGTG-AATTTAATC-A-CGActc
gi|14 : TGTTTGAACAGGTG--AC--AAGTACAT-CATCATTCAGG-AAA--ACCATCGC-T--GCAGCGAAATCTAACG-A-TAATCAA--AATTAA-TATGGACT-TATG-TTT--C-ATTG-CAGAAA
gi|15 : atctgttttC-----GTGTTGACATC-TT-T--T----AAAAT--TTTCA-A--------GTGAT---T-TAAT-ACAAGAT---TTGTA-TTT----TC----AACAT---TTATT-TTT---ATT-TTA----C--ACAGTCCGGCAGACAA-GCTCCcg
gi|16 : TGACCAAAAC-----GTGTCAACATCGTTAT--G----AGAATGACTTCA-AA-----G-GAAAT---TCTTAT-AGATGAT---TCATG-TTT-----------TCAT---TT-TA-TTT----CT-CTA----C--agtgag
gi|17 : TTTT---TC-TT-TTT---AAT-TTA----C--ACAATCCGGACGACAA-GCCCCTATG
gi|2 : CCGGT-GACACACATTCTATCCAACGAAAACGGGTACAACT-TCAGCAT-ATTTATCTGTCTCCTCGC-CAATTCC--CTC--T-CATTG-GAACGGAAGTGAG-ACAGACTACAGGGAAAATGTTAGAAATGGAAAGATTAAAA-TCAGCGCTAGCATAATT-GGAAACAGAATAAT-----G-TGTTGTT-AAATAATTATGTGTTTTATGTTT-GAATTA---AGGC-ACAAACG-TATAACCTTTGTATTTG-TCAATCAACCATTAGAAC-G-CAGAATGTAGACCATa
gi|2 : CCTCTT--GAAGTTATATATCGAACAGGATACTCTAGTTAGC----AGCATATG--CTATATGG--CGA--AGGATGGAAG---TA-TAA-TATGCTGAAGTTTGTACCCGTTTTC-GT-T-GGATAGAATGTGTGTTC---CCGGCGCAAC--AAACACAT--ACCAGTTAGG-AAA--TT--TCGC-T--GAATTA-AAT-TAACC-A-CGATCGGCCAATAAA-T-TG---T-TA-GTTTT-GG-AGTA-CAG-AAACGGGTGTTGAAAA-A-GCTAGGGATAT-------ctatcacacacaatcagaagagaagtgagactgatgctcacatatgatatatgatcaacgtatgtggtcctcttgaagttatatatcgaacaggatactctagttagcagcatatgctatatggcgaaggatggaagtataatatgctgaagtttgtacccgttttcgttggatagaatgtgtgttcccggcgcaacaaacacataccagttaggaaatttcgctgaattaaattaaccacgatcggccaataaattgttagttttggagtacagaaacgggtgttgaaaaagctagggatat
gi|3 : ccggtgacacacattctatccaacgaaaacgggtacaacttcagcatatttatctgtctcctcgccaattccctctcattggaacggaagtgagacagactacagggaaaatgttagaaatggaaagattaaaatcagcgctagcataattggaaacagaataatgtgttgttaaataattatgtgttttatgtttgaattaaggcacaaacgtataacctttgtatttgtcaatcaaccattagaacgcagaatgtagaccatctatcacacacaatcagaagagaagtgagactgatgctcacatatgatatatgatcaacgtatgtggtTTCCAT-TTCTGACATTT-TCC-CTAA-G----TCTGTA-----CA---TG-------TATC-----ACGTCCGTTCTTTCCAGACCGATTTGGCAAGATAACACA-CAA-T---TTGA---T-GTACCTGTTTTC-GTAT-G-ATAGAAAGTGTGTCA--ACCGGCG--AC--AAACACAT-CGGCACGTAGG-AAA--ATCATTGC-T--GCATTG-AATCTAACC-A-CGATCAGCCAATGAATT-TC---T-TA-G-TTT-AG-AGTA-CA-AAAACGAGTGTTGAACCTA-G-TGGGGGTGT-------ATTTTTT------AAGATGGCGACTTTCGTCC-----ATATATTG-ACT-------TA--G---TAG---TTACAA-GGG-GTGTT-ATTT-TAACG-ATA----------AATAACAAAAAG-----GTATTGACATCGTTAT--C----GGAATAAATTCA-AA-----G-GGGAT---T-TTCTGAGAGAA----TCATACTTT----T-----TTTA-----T-TT-TAT---ATT-TTC----C--ACAATCC
gi|4 : atatTTGCGAGG--TGACAGAATAAATATGCTGAAGTTTGTCCCTGTTTTC-GT-T-G-ATAGAATGTGTGT-C--ACCGGGG--AC--AAACACATTCACCATTTAGG-AAAG-ATCATCCCCT--GCAGT--AATCTCATC-AACGATCGGCCAATAAA-T-TG---T-TA-G-TTTAAG-AGTA-CAG-AAACGGGTGTTGAACTGA-GTTGGGGGGAT-------A-TTTTC------CAGATGGCGAC-TTCGTCCC--TTGTA--TTG-ATTATAG-TAC-------TAC---TTG-AAGGGG-GTGCT-ATTTAAAACGAATGTGGTG-----AATGACC-AAAC-----GGGTTGGAATTGTTAT--T----AGAGTTA-TTCA-AAGGGGGG-GGGATGGGT-AAATAAGAGATT---TCACATTTT----T-----ATTATGTATT-TT-TTTTTAAAT-TTA----CAAACAATCCGGAAGA
gi|5 : ttTGACACA-CAA-ATTGTTGATGCT-GTACCTGTTTTCTGT-TTG-ATAGATCGTGTGTCA--ACCGGCG--AC--A----CA--CACCATTTAGG-AAA--ATCATTGG-C--GCAGTG-GATCTAACC-A-CGATCAGCCAATGAA-T-TG---T-TA-G-TGT-AT-AGTA-CAG-AAATGGGTGTTGAACCTA-G-TGGGGGTAT-------A-TTTCT------AAGATGGCGACTTTCGTCCC--TGGTA--TTG------A--TGTA--G---TAG---TTA-CA-GGG-GTGTT-ATTC-AAACA-CTGTATA------AATAACC-AGAC-----GTGTTGACATCGTAAT--G----AGAATGACTTCA-AA-----G-GGGAT---T-TTCT-AAAGGAA---TTACA-TTT----T-----AT--------------------T-TTC----C--ACAATCCGGAAAAC
gi|6 : -CATCATT-AGG-AAATCATCGTTGC-T--GCG--G-AATCTAAAC-G-C-AT-AATCAATAAA-T-T----T-AA-G-ATT-AGGAGTAGCAGAA-----GTGT-GAA-----G-TGAG---AT---------TTTCT------AAT-TGGTGACTTTCTTTCT--TTTTAT-TTG-A-------------------A---TTG-A---GA-CTGTT-ATTC-CAATG-ATGT-AT------AATTACTA----------TG----CATC---AT--G----AAAACGAA-TCATAA-----T-GGGGT---T-TTAA-AAATGAT---GC-----TT----T-----ATT
gi|7 : tttcagattttagaaC-A-CGATAACCCAATAAC-T-TG---T-AA-G-TTT-AG-TGTT-CAGAAA-CGGGAGTTAAACC-AAG-TGGAG-TATTTTTTTTA-TTTTTTTTTTGAAGTTTGTGACTTTTGTCCC--TTGTAC------TTATA--TATA--GTTCTAC---TTG-CA-G--------------AA--G-ATGTATA------AATGACTAAAAC-----ATGTCGTCATCGTTAT--T----AAAATAACCTCT-AA-----G-GACAG---T-TTAT-AGAGGCTGAATCATA-TTT----
gi|8 : GTAT-TTGGATTATACGTGCA--C---TAAGCTTTA-AT-GGG-CTGTTTACTT-AA-CG-AAGTGATGGCCGTAATGACCAAAACAACTGGTCGCGA-ATTGTTATATCTATAAGAGTGACTTCA-AA-----G-GGG
gi|9 : tcccaaattaTTAAAATAATT-TGTATTT-AG-TTT-GAATTA----GGC-ACAACAGTTATAACCTTGTTATT-GCTC---TAACC-----TCCTG-CATCCTATAAAAAATTGTGCAGTG-CAGACTTTTTATTTCATATTTTGACACTTCCCCTCTAA-GAAAATCTATA-----CAA---GC-CTAGTTATTTGTAAACTTCCGTTCCAggggggattgggattagctcaattttttgaatctaagttttttccaataatctgg