lowQualScore : 2 666666 666 2 2
lowQualScore : . ...... ... . .
lowQualScore : 5 444444 888 1 1
consensus : TCAGTCCAA-ATAT------C-C-AGC-CG-AGCCGAATCTCAACCGAGATTA
Reference ( gi|3 ) : TCAGTCCAA-ATAT------C-T-AGC-CG-AGCTGAATCTCAACCGAGATTA
gi|5 : TCAGTCCAATATAT------C-C-AGC-CG-AGCTGAATCTTAACCGAGATT
gi|6 : TCAATCCAA-ATAT------C-A-AAC-CG-AGCCGAATCTTGGTCGTGATTA
gi|9 : TCAGTCCAA--TGTAGCCGGC-TGAGC-CG-AGCTGAATCTCA
gi|8 : gcgCAGTCCAA-ATTT------C-C-AGC-CG-AGCTGAATCTCAACCGAGATTA
gi|11 : AGTCCAA-ATAT------C-C-AGC-CG-AGCCGAATCACAACCGAGATTA
gi|1 : AGTCCAA-ATAT------C-C-AGC-TG-AGCCGAATCTCAACCGAGGTTA
gi|14 : acaAGTCCAA-ATAT------C-C-AAC-CG-AGCCGAGTCTCAACCGAGAT
gi|4 : tAGTCCAA-ATAT------C-C-AGC-CG-AGCCGAATCTCGAAAGAGATTA
gi|2 : aAGTCCAA-ATAT------CCT-AGCGCGCAGCTGAATCTCAAACGAGATTc
gi|7 : tAGTTTAA-ATAT------T-C-AGC-AG-AACCGAATCTCAACCGAGATTA
gi|12 : aGTCCAA-ATAT------C-T-AGC-CG-AGCTGAATCTCAACCGAGATTA
gi|10 : GTCCAA-ATAT------C-T-AGC-CG-AGCTGAATCTCAACCGAGATTA
gi|15 : GTCCAA-ATAT------C-C-AGC-CG-AGCCGAATCTCAACCGAGATTAg
gi|13 : GTCCAA-ATAT------C-C-AGC-CG-AGCCGAATCTCAACCGAGATTA
gi|16 : TCCAA-ATAT------C-C-AGC--A-AGCCGAATCTCATCCGAGACTA
gi|17 : AA-ATAT------C-C-AGC-CG-AGCCAAATCCCAACCGAAATTAg
gi|19 : AT------C-C-AGC-CG-AGCCGAATCTCAACCGAGACTA
gi|18 : T------T-T-AGC-CG-AGCTGAATCTCAACCGAGATTAct
gi|20 : -AGC-CG-AGCTGAATCTCAACCGAGATTAaaa
Alignments
lowQualScore : 4 77777 2 2
lowQualScore : . ..... . .
lowQualScore : 7 00000 0 0
consensus : TCAGTCCAA-ATATCC-----AGC-CG-AGCCGAATCTCAACCGAGATTA
Reference ( family-730 ) : TCAGTCCAA-ATATCC-----AGC-CG-AGCCGAATCTCAACCGAGATTA
gi|1 : AGTCCAA-ATATCC-----AGC-TG-AGCCGAATCTCAACCGAGGTTA
gi|10 : acaGTCCAA-ATATCT-----AGC-CG-AGCTGAATCTCAACCGAGATTA
gi|11 : AGTCCAA-ATATCC-----AGC-CG-AGCCGAATCACAACCGAGATTAg
gi|12 : GTCCAA-ATATCT-----AGC-CG-AGCTGAATCTCAACCGAGATTA
gi|13 : GTCCAA-ATATCC-----AGC-CG-AGCCGAATCTCAACCGAGATTA
gi|14 : AGTCCAA-ATATCC-----AAC-CG-AGCCGAGTCTCAACCGAGAT
gi|15 : tGTCCAA-ATATCC-----AGC-CG-AGCCGAATCTCAACCGAGATTA
gi|16 : TCCAA-ATATCC-----AGC--A-AGCCGAATCTCATCCGAGACTA
gi|17 : AA-ATATCC-----AGC-CG-AGCCAAATCCCAACCGAAATTAg
gi|18 : -----AGC-CG-AGCTGAATCTCAACCGAGATTA
gi|19 : tttATCC-----AGC-CG-AGCCGAATCTCAACCGAGACTAaaa
gi|2 : AGTCCAA-ATATCCT----AGCGCGCAGCTGAATCTCAAACGAGATTct
gi|20 : t-----AGC-CG-AGCTGAATCTCAACCGAGATTA
gi|3 : TCAGTCCAA-ATATCT-----AGC-CG-AGCTGAATCTCAACCGAGATTAc
gi|4 : AGTCCAA-ATATCC-----AGC-CG-AGCCGAATCTCGAAAGAGATTA
gi|5 : aTCAGTCCAATATATCC-----AGC-CG-AGCTGAATCTTAACCGAGATTc
gi|6 : TCAATCCAA-ATATCA-----AAC-CG-AGCCGAATCTTGGTCGTGATTA
gi|7 : AGTTTAA-ATATTC-----AGC-AG-AACCGAATCTCAACCGAGATTA
gi|8 : aCAGTCCAA-ATTTCC-----AGC-CG-AGCTGAATCTCAACCGAGATTA
gi|9 : TCAGTCCAATGTAGCCGGCTGAGC-CG-AGCTGAATCTCA
Alignments
lowQualScore : 4 77777 2 2
lowQualScore : . ..... . .
lowQualScore : 7 00000 0 0
consensus : TCAGTCCAA-ATATCC-----AGC-CG-AGCCGAATCTCAACCGAGATTA
Reference ( family-730 ) : TCAGTCCAA-ATATCC-----AGC-CG-AGCCGAATCTCAACCGAGATTA
gi|1 : AGTCCAA-ATATCC-----AGC-TG-AGCCGAATCTCAACCGAGGTTA
gi|10 : acaGTCCAA-ATATCT-----AGC-CG-AGCTGAATCTCAACCGAGATTA
gi|11 : AGTCCAA-ATATCC-----AGC-CG-AGCCGAATCACAACCGAGATTAg
gi|12 : GTCCAA-ATATCT-----AGC-CG-AGCTGAATCTCAACCGAGATTA
gi|13 : GTCCAA-ATATCC-----AGC-CG-AGCCGAATCTCAACCGAGATTA
gi|14 : AGTCCAA-ATATCC-----AAC-CG-AGCCGAGTCTCAACCGAGAT
gi|15 : tGTCCAA-ATATCC-----AGC-CG-AGCCGAATCTCAACCGAGATTA
gi|16 : TCCAA-ATATCC-----AGC--A-AGCCGAATCTCATCCGAGACTA
gi|17 : AA-ATATCC-----AGC-CG-AGCCAAATCCCAACCGAAATTAg
gi|18 : -----AGC-CG-AGCTGAATCTCAACCGAGATTA
gi|19 : tttATCC-----AGC-CG-AGCCGAATCTCAACCGAGACTAaaa
gi|2 : AGTCCAA-ATATCCT----AGCGCGCAGCTGAATCTCAAACGAGATTct
gi|20 : t-----AGC-CG-AGCTGAATCTCAACCGAGATTA
gi|3 : TCAGTCCAA-ATATCT-----AGC-CG-AGCTGAATCTCAACCGAGATTAc
gi|4 : AGTCCAA-ATATCC-----AGC-CG-AGCCGAATCTCGAAAGAGATTA
gi|5 : aTCAGTCCAATATATCC-----AGC-CG-AGCTGAATCTTAACCGAGATTc
gi|6 : TCAATCCAA-ATATCA-----AAC-CG-AGCCGAATCTTGGTCGTGATTA
gi|7 : AGTTTAA-ATATTC-----AGC-AG-AACCGAATCTCAACCGAGATTA
gi|8 : aCAGTCCAA-ATTTCC-----AGC-CG-AGCTGAATCTCAACCGAGATTA
gi|9 : TCAGTCCAATGTAGCCGGCTGAGC-CG-AGCTGAATCTCA
blockSeqs : T GGCTG G C
blockSeqs : T T . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqCons :
originalCons : TCAGTCCAA-ATATCC-----AGC-CG-AGCCGAATCTCAACCGAGATTA
finalCons : TCAGTCCAA-ATATCC-----AGC-CG-AGCCGAATCTCAACCGAGATTA
Alignments
lowQualScore : 4 77777 2 2
lowQualScore : . ..... . .
lowQualScore : 7 00000 0 0
consensus : TCAGTCCAA-ATATCC-----AGC-CG-AGCCGAATCTCAACCGAGATTA
Reference ( family-730 ) : TCAGTCCAA-ATATCC-----AGC-CG-AGCCGAATCTCAACCGAGATTA
gi|1 : AGTCCAA-ATATCC-----AGC-TG-AGCCGAATCTCAACCGAGGTTA
gi|10 : acaGTCCAA-ATATCT-----AGC-CG-AGCTGAATCTCAACCGAGATTA
gi|11 : AGTCCAA-ATATCC-----AGC-CG-AGCCGAATCACAACCGAGATTAg
gi|12 : GTCCAA-ATATCT-----AGC-CG-AGCTGAATCTCAACCGAGATTA
gi|13 : GTCCAA-ATATCC-----AGC-CG-AGCCGAATCTCAACCGAGATTA
gi|14 : AGTCCAA-ATATCC-----AAC-CG-AGCCGAGTCTCAACCGAGAT
gi|15 : tGTCCAA-ATATCC-----AGC-CG-AGCCGAATCTCAACCGAGATTA
gi|16 : TCCAA-ATATCC-----AGC--A-AGCCGAATCTCATCCGAGACTA
gi|17 : AA-ATATCC-----AGC-CG-AGCCAAATCCCAACCGAAATTAg
gi|18 : -----AGC-CG-AGCTGAATCTCAACCGAGATTA
gi|19 : tttATCC-----AGC-CG-AGCCGAATCTCAACCGAGACTAaaa
gi|2 : AGTCCAA-ATATCCT----AGCGCGCAGCTGAATCTCAAACGAGATTct
gi|20 : t-----AGC-CG-AGCTGAATCTCAACCGAGATTA
gi|3 : TCAGTCCAA-ATATCT-----AGC-CG-AGCTGAATCTCAACCGAGATTAc
gi|4 : AGTCCAA-ATATCC-----AGC-CG-AGCCGAATCTCGAAAGAGATTA
gi|5 : aTCAGTCCAATATATCC-----AGC-CG-AGCTGAATCTTAACCGAGATTc
gi|6 : TCAATCCAA-ATATCA-----AAC-CG-AGCCGAATCTTGGTCGTGATTA
gi|7 : AGTTTAA-ATATTC-----AGC-AG-AACCGAATCTCAACCGAGATTA
gi|8 : aCAGTCCAA-ATTTCC-----AGC-CG-AGCTGAATCTCAACCGAGATTA
gi|9 : TCAGTCCAATGTAGCCGGCTGAGC-CG-AGCTGAATCTCA