lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222 111111111111 111111111111111111111111 2222222222 11 111111 1111 11111 111111 333333333333333333333333333333333333333333333333333333333333333333333333333333333 1111 11 22222 44444444444444444 1111111111 11111111 11111111 11 6666666666666666666666666666666666666666666666666666 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1111111 1111111 22222 11 1111 222222 11 11 22222 2222222222222222222222222 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11 111111 88888888888888 11 66666666666666 1111111111111 11 111 11111 11111 222222 22222 222222222 111111111111111111111111 111111111111 2222
lowQualScore : 3 3 1 1 5555 000000000000 1 55555555 555 444 1 44 1 22 1 666666666666666666666666 222 1111111111 88888888 4 33 5555 2 2 2 66 777 2 888888 0 2 5 2 2 6666 2 88888 00000 33 33 66 2 333333 33 55 44 3 0 5555 3 55 1 6 333333333333333333333333333333333333333333333333333333333333333333333333333333333 2 555 2 6666 2 2 11 5 333 33 33 22222 33 2 444 22222222222222222 2 7777777777 2 6666 00000000 33 44 77777777 3 3 44 6666666666666666666666666666666666666666666666666666 3 3 7 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3 3 3 3 7777 3333333 4 8888888 9 11111 44 3333 1 99 1 0 8 0 88 5 8 333333 3 55 6 5 5 11 0 5 33333 3 3 3 6666666666666666666666666 55 4 4 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 2 2 66 777 2 2 66 2 555555 33 66 2 33333333333333 99 444 888 2 4 4 66 55 4 55 2 2 77 33 2 2 33 88888888888888 33 33 7 55 777 2 5 3 3 44 3 8888888888888 3 2 3 33 5 2 00 33 6666666 222 00000 7 99999 2 5 2 0 111111 2 2 22222 2 2 5555 33 4 88888888 333333333 222 666666666666666666666666 1 22 1 44 1 444 555 55555555 1 000000000000 6666 1 1 3 3
lowQualScore : . . . . .... ............ . ........ ... ... . .. . .. . ........................ ... .......... ........ . .. .... . . . .. ... . ...... . . . . . .... . ..... ..... .. .. .. . ...... .. .. .. . . .... . .. . . ................................................................................. . ... . .... . . .. . ... .. .. ..... .. . ... ................. . .......... . .... ........ .. .. ........ . . .. .................................................... . . . ............................................................................................... . . . . .... ....... . ....... . ..... .. .... . .. . . . . .. . . ...... . .. . . . .. . . ..... . . . ......................... .. . . ......................................................................................... . . .. ... . . .. . ...... .. .. . .............. .. ... ... . . . .. .. . .. . . .. .. . . .. .............. .. .. . .. ... . . . . .. . ............. . . . .. . . .. .. ....... ... ..... . ..... . . . . ...... . . ..... . . .... .. . ........ ......... ... ........................ . .. . .. . ... ... ........ . ............ .... . . . .
lowQualScore : 5 3 7 7 8888 555555555555 5 44444444 666 111 5 88 4 00 4 111111111111111111111111 777 0000000000 11111111 7 22 7777 7 7 7 33 111 7 333333 7 7 3 7 7 8888 7 77777 66666 33 77 22 7 000000 99 22 22 1 4 6666 6 00 2 0 888888888888888888888888888888888888888888888888888888888888888888888888888888888 9 000 5 8888 5 5 44 0 111 22 22 55555 44 5 444 11111111111111111 5 6666666666 9 1111 44444444 00 88 88888888 1 1 11 2222222222222222222222222222222222222222222222222222 3 3 3 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 6 6 6 6 7777 3333333 8 0000000 3 00000 66 8888 8 22 4 8 0 8 88 6 0 000000 0 88 7 7 0 99 1 0 77777 6 6 6 2222222222222222222222222 55 0 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 9 9 44 222 7 7 77 7 777777 77 55 4 55555555555555 11 111 222 4 7 7 11 66 7 44 4 4 55 22 4 4 22 55555555555555 44 44 5 99 222 7 7 1 1 22 1 5555555555555 1 3 9 99 0 5 88 44 9999999 000 77777 1 88888 5 0 5 7 000000 7 7 55555 7 7 7777 22 7 11111111 666666666 777 111111111111111111111111 4 00 4 88 5 111 666 44444444 5 555555555555 9999 7 7 3 5
consensus : ATCT-CAG-TGA-G-AT--N-GT--C---------GA-G--------GC---TAAA---T-ATTT--GGAC-T--G-GT--------------C---------GCCTT-TAC--C---A---TCTC--------AG-A--C----CAA-T-G-TC-AC-A-C-AA-C--C-TTA-T-TC-GGG-AAA-NT-TTG-CCT--C--AACTTC---CG-CCG--C-TT-GT------T--GCGA-TT--A-AAATG-GC-TT-AA--ACTGAACATCTTGCCCGCTCTCAAATCTCACACTTAGACATCCCTGC-GATACTAACTTCAAAA-TTT-TCAC-CT--T--AGA-AC---ATCC--TA-CTAAC---TC-C--T-ATC-A-C-GATAA-AAC-TTGC--A--TTTC--TT-A--C-CT---TT--N-CATA-AG------TG-TTAAATCCC--A------AT-T----TAA--------A-TCA-AGTT---G--G-TTA-TTT-CACACG-----TCC----AT--T--------T--C---------GTGC-T-T-CTC--AAC-ACTGAA-GA-GTTCC----------------AA-AA------T--------TG-A-TA---GTTTG-T------TA---CTA--T---C---AA---CTA----------GTC-TT-GAG-G-T-A--CA-GA--C-CTGTTTATCTCT----ACTTTTAAATGAC-TTT-ACTT-NTCACAAAGCATT-T-CAAAATCAT--GAAAAACAAA-ATTAACAAATAGAAAACT-ACGTAAATTTC-AAACAG------TCTATCTGAAAACANTTTT--AGACCGTTC-TG-TA--CCTCAA-GACTAA-TTC-GTAGTA-CAAA-C-TA--------TCA------AT------TT--GGAA-CTC-TTC-----------AG-G-----------C----AC-AA---------A---------A---T--------GGACG----------------T-GA-AAATAA--CG--A-A-CTTGA-TTTAA-AT------T--GGGA--TTTAAC-ACT--------T---ATG-NAA---A---G-GT-A-AGAAAT--GCAA-GTT-TTATC-G-TG-ATA-GGGA--GTTA-G-T--A-----GGAT--GATGTC--T--AAG-GTG--AAAA--T-TTGA-AGCGGGC-AAGA-TGTTCA--G-TTT-AA-GT-TA--T-TTT-AATCG--CA-A-CAA-G--CG-----G-CGGAAGTT--G--AGGCAA-G-N-TTTCCC-GA-A-TAA-G--G-TT-G-TGTTA--C-A-TTG----G--T-CT--------GAGA---T---G-GTA-AAGGC---------G--------------AC-C--A-GTCC--AAAT-A---TTTA---GC--------C-TC---------G--AC-N--AT-C-TCA-CTG-AGAA
Reference ( gi|1 ) : ATCT-CAG-TGA-G-AT--G-GT--A---------GA-G--------GC---TAAA---T-ATTT--GGAC-T--G-GT--------------C---------GCCTT-TAC--C---A---TCTC--------AG-A--C----CAA-T-G-TA-AC-A-C-AA-C--C-TTA-T-TC-GGG-AAA-AT-TTG-CCT--C--AACTTC---CG-TCG--C-CT-GT------T--GCGA-TT--A-AAATG-GC-TT-AA--ACTGAACATCCTGTCGNNNNNNNNNNNNNNNNNNNNNNNNNACGAACGGGTA-TAACTTCAAAAATTTATCACACT--T--GGA-AT---ATCC-ATA-CTAAC---TC-C--T-ATC-A-C-AATAA-AAC-TTGC--A--TTTC--T--A--C-CT---TT--C-TATA-AG------TG-TTAAATCCC--A------AT-T----TAA--------A-TCA-AGTT---G--G-TTA-TTT-CACACG-----TCC----AT--T--------T--T---------GTGC-T-T-CT---AAC-ACTGAA-GA-GTTCC----------------AA-AA------T--------TG-A-TA---GCTTG-T------TA---CTG--T---C---AA---CTA----------GTC-TT-AAG-G-T-A--CA-GA--C-CTGTTTATCGTT----ACTTTTAAATGAC-TTT-ACTT-GTCACAAAGCATT-T-CAAAATCAT--GAAAAACAAA-ATTAACAAATAGAAAACT-ACGTAAATTTC-AAACAG------TCTATCTGAAAACATTTTT--AAACCGTTC-TG-TA--CCTCAA-GACTAA-TCC-ATAGTA-CAAA-C-TA--------TCA------AT------TT--GGAA-CTC-TTC-----------AG-------------C----AC-AA---------A---------A---T--------GGACG----------------T-GA-AAATAA--CG--A-A-CTTGA-TTTAA-AT------T--GGGA--TTTAAC-ACT-TAT-T-CT---ATG-AAA---A---G-GT-A-AGAAAT--GCAA-GTT-TTATT-G-TG-ATC-GGGA--GTTA-G-T--A-----GGATCCGATGTC--T--AAG-GTG--AAAA--T-TTGA-AGCGGGC-AAGA-TGTTCA--G-TTT-AG-GT-TA--T-TTT-AATTG--CA-A-CAG-G--CG-----G-CGGGAGTT--G--AGGTAA-A-T-TTTCCC-GA-A-TAA-G--G-TT-G-TGTTG--C-A-TTG----G--T-CT--------GAGA---T---G-GTA-AAGGC---------G--------------AC-C--A-GTCC--AAAT-A---TTTA---GC--------C-TC---------T--AC-C--AT-C-TCA-CTG-AGAAT
gi|2 : ATCT-CAG-T-A-G-AT--G-GT--A---------AA-G--------GC---TAAA---T-ATTT--GGAC-T--G-GTC-------------C---------GCCTT-CAC--C---A---TCTC--------AG-A--C----CAA-T---TC-ACAA-C-AA-C--C-TTA-G-TC-GG---AA-AT-TTG-CCT--C--AACTTC---CG-TCG--CGCT-GT------T--GCGA--T--A-AAATA-ACATT-AA--ACTGAACATCTTGCC
gi|4 : aATCT-CAT-GGA-G-AT--G-GT--A---------AA-A--------GC---TAAA---T-ATTTTTGGACCT--G-G---------------C---------GCTTT-TAC--C---A---TCTC--------AA-A--C----CAA-T-G-T---C-A-C-AA-C----TTA-T-TCCGGG-AAA-AT-TTC-CCT--C--AACTTC---CGGTCG--C--T-GT------T--GCGA-TTAAA-AAATA-AC-TTAAA--ACTG-ACATCTTcgcttcaaaatttcaccttagcatcctataacgtcccctatcacaataaaccttcatttctataccttttcataagtgttaaatcccatttaaattcaggttggttatttcacgtgcattttcaatgatttgtgctttctcaaacactgaacgagttccaaattgatatattcgaatcaactagtcttaaggtaacaacctgttattttacttttaagtgaccttactttcaaaagcattaaaaaaatcatgaaaaacaaatattaacaataggaaactaacgtaatttcaaaacagtctatctgaaaacagttttaaaaccgttctgtacctcaacgactaattccatagtacaaactattcaaatttgaactcttcagcacgaaaatggacgtgaaaataacgataccttgatttaaattggatttaacactatgaaaaagtaaaaagcaagttttatgtacagtgagttagtaggagtctaaggtaaaatttgaatcgtgcaatgttcagtttaagttctttaatcgcccaacagcgacgaagttgaggcaaatttcccgaataagttggtacatttctgagatgtgaagcaccagtccaaatatttagcctttaccatctcactgagttt
gi|6 : aATCTACAG-TGA-G-AT--TCGT--C---------GA-G--------GC---TACA---T-ATTT--TGAC-T--G-GC--------------C---------GCCTC-TTCA-A---A---TATC--------AGAA--C----CAA-T-G-TA-AC-A-C-AA-C--CTTTA-TAGC-GGG-AAATTT-TTG-CCTTCC--ATCTTC---GG-CCG--C-TT-GTC-----T--GCGA-TT--A-AA--G-G--TA-AA--ACTGAATATCTTGCCCGCTCTCAAATCTCACACTTAGACATCCCTGC-GATACTAACTCC------CTATC---CTGAT--AAA-ATTGCATTC-TTA-CTAAA---T--------TT-A-C--ATAG-TGT-TAGA--A--TTCC--C--A--C-AT---TT--A--ATA-G--------G-TTCGATTCA--T------AT-T----CAA--------A-CC---------------TA-TTG-CAAATGGCT--TCCGGA-AT--T--------T--C---------ATGC-TCT-CTC--AAC-ACTGAA-GA-GTTCC----------------AA-tgccgcttcaaatttttccaccttagacatcctactaactccctgtcacaataagaatttgcatttctttaccttttcatagtgttaaatccaattttaaatcaagttcgttattttcacgtccattcaatgattttgtgcttttctcaaccactgaagagtttccaaattgatagttttgtactatcaaactagtcttaaggatacaggctgttatctttacttttcaatgacttttactttgtcacaaagcattttcaaaatcatttgaaaaacaaaattaacaaatagaaaactacgtaaatttcaaacagtctatctgaaaacatttttaaaaaccgttcatgttacctcaagactaatacatagtaccaaactatcaa
gi|5 : cactaaatagtagtacaaacttttatgaaatatactaATCTACAG-TGA-G-AT--TCGT--C---------GA-G--------GC---TACA---T-ATTT--TGAC-T--G-GC--------------C---------GCCTC-TTCA-A---A---TATC--------AGAA--C----CAA-T-G-TA-AC-A-C-AA-C--CTTTA-TAGC-GGG-AAATTT-TTG-CCTTCC--ATCTTC---GG-CCG--C-TT-GTC-----T--GCGA-TT--A-AA--G-G--TA-AA--ACTGAATATCTTGCCCGCTCTCAAATCTCACACTTAGACATCCCTGC-GATACTAACTCC------CTATC---CTGAT--AAA-ATTGCATTC-TTA-CTAAA---T--------TT-A-C--ATAG-TGT-TAGA--A--TTCC--C--A--C-AT---TT--A--ATA-G--------G-TTCGATTCA--T------AT-T----CAA--------A-CC---------------TA-TTG-CAAATGGCT--TCCGGA-AT--T--------T--C---------ATGC-TCT-CTC--AAC-ACTGAA-GA-GTTCCTAATAGTATATTTCATAA-AAGT----T--------TGTACTA---GCTTATT------TA---GTG--GAGAA---AA---CTGT---------GTC-TTGAAT-G-T-A--CA--A--CACTTCTAAGCGTCCTCAACCTTCAAATGACAACC-ACTG-CTCACAAAGCAt
gi|14 : taATAT-CAG-CGAAG-TT--C-GT--C---------GA-G--------GCC--TGAA---T-ATT---GGTC-T--T-GG--------------C---------GCTCT-T-C--CGA-A---TCTC--------AG-A--C----CAG-T-C-TC-GC-A-C-AA-A--G-TGA-T-TC-GGG-AAA-TC-TTG-CCT--G--A----------------------T------T--GCGA-TT--A-ACATG-AC-TT-AA--ACTGAATTTTCTGCC
gi|21 : taATCT-CAG-TGA-G-AT--G-GT--A---------AA-G--------GC---TAAA---T-ATTT--GGAC-T--G-GT--------------C---------GCCTT-CAC--C---A---cgcttctaatctttatcttaagcgtctactaactcactatgcaaaccgtcttctacaaatac
gi|21 : taatctcagtgagatggtaaagccgtaaaggctaaatatttggacATCT-CAG-TGA-G-AT--G-GT--A---------AA-GCCGTAAAGGC---TAAA---T-ATTT--GGAC-T--G-GTGAAGGCGACCAGTCCAAATATTTAGCCTT-TAC--C---A---TCTC--------Ata
gi|17 : taATCT-CCG-AGA-G-A-----GT--C---------GC-G--------AC---TAAA---T---TT--G-AC-T--G-GT--------------CAG-------GTCTC-TTC--C---AAAATCTC--------CG-A--C----CAG-TTG-TC-AC-A-C-AA-A--G-TGA-T-TC-GGG-A----TCTTG-CCT--C--GACTTC----G-CCG--C-TTTGT------T--GCGA--T--A-AAATG-ctgagatta
gi|19 : ttagagATCT-CAG-TGA-G-ATT-G-GT--A---------GA-G--------GC----AAA---T-ATTT--GGAC-T--G-GT--------------C---------GCCTT-
gi|25 : tctcagtgagattggtagaggctaaatatttggactggtcgccttctactctagATCT-CAG-TGA-GGAT--G-GT--A---------AAAG--------GC---TAAA---T-ATT---GGAC-T--G-GT--------------C---------GCCTT-CAC--C---A---taa
gi|26 : ATCT-CAG-TGA-G-AT--TCGT--C---------GA-G--------AC---TAAA---T-ATTT--GGAC-T--G-AT--------------T---------GTCTC-TAA--TGA-A---TCTC--------AG-A--gatggatgaagcgacc
gi|24 : ctaATCT-CAG-TAA-C-AT--TTGT--C---------AA-G--------GC---TAAA---T-ATTT--GGAC-T--G-GT--------------T---------GCATT-T
gi|28 : gcaaacgactgtatttggactgtccaATCT-CAG-TGA-G-AT--G-GT--AAAGCCGTAGAA-G--------GCG--TAAAATTT-ATTT--GGAC-T--G-GT--------------C---------
gi|32 : ATCT-CAGCTGA-G-AT--TCAT--T---------GA-G--------GA---TGAA---T-ATTT--GGAC-T--G-A---------------C---------GCCTta
gi|23 : tATCT-CAG-CCA-G-AT--TTGT--C---------GA-G--------GC---TGGA---T-ATTT--GAAC-T--G-AC--------------C----------CCTC-T
gi|27 : ctcagcaATCT-CAT-TGA-G-AT--TCAT--C---------GA-G--------GC---TAAA---T-ATTA--TGAC-T--G-Gtaatgcacgactaacaagatgtaa
gi|10 : agtgtaTCT-CAG-TGA-G-ATTCG-AC--A----------A-G--------GC---TCAT---T-ATTT--GGAC-T--G-GT--------------C---------ACCTC-T-C--TGA-A---TCTC--------AG-A--C----CAG-T-G-TC-AC-A-T-AA-A--G-TGA-T-TT-GGG-AAA-TC-TTG-CCT--C--AACTTC---TG-CCA--C-TT-GT------T--GCGA-TT--A-AAATG-GC-TG-AA--ACTGAATTTCTTGCCatgcatcttca
gi|11 : cttcagtgttgagaaagcacaaactatatgtgaaaataaccaacttgatttaatttgggactgaacactacataaagataagaaatgcaattttatagtgataaggagttagtaagatgtctaaggtgaaaatctgaagcaTTT-CAG-CGA-G-AT--TCGTCGA---------GA-A--------GCGAGTAAA---T-ATTT--GGAC-T--GAGC--------------C---------GTCTC-TAC--G---AA--TCTC---------G-A--C----CAAAT-G-T---C-A-C-AA-CTAC-TTA-T-TC-GGT-GAA-AT-TTG-CCT--C--AACTT----GG-CCG--C-TT-GT------T--GCGATTT--A-AAATG-GC-TT-AA--ACTGAACATTCT
gi|12 : tTCT-CGA-TGA-G-AT--TTGT--C---------AA-G--------AT---TGGA---T-TTGT--GGGT-T--G-AT------------------------GCCTC--AT--CTGAA---TCTT--------AA-A--C----CGA-T-G-TC-AC-CTC-AA-A--G-TGA-T-TT-GGG-AAA--C-TTG-TCT--G--AACTTT---GG-CCA--C-TT-GT------T--AAAA-TT--T-AAATG-GC-TT-AG--TCTGAGTTTCTTGtgccgattcaaatttacaccttagaatcatcctactaacaccatgtcgcaataagaacttgcatttcttacctttgcatagtgttaaatcccaaaatttaaacaagttggtttattttc
gi|19 : TCT-CAG-TGA-G-ATT-G-GT--A---------GA-G--------GC---TAAA---T-ATTT--GGAC-T--G-GT--------------C---------GCCTTCTAC----------TCT---------AG-A--cacacttcaacattttgacttagacaccttgttaaatccctttcattatggaacttgcatggcttaccattacatacatgttatatgacagtaaatcaagttagtgttattttccaac
gi|36 : TCT-CAG-TGA-G-AT--TCGT--C---------GA-G--------GC---TAA----T-ATTTT-GGAC-T--G-Gaggcgaccagtccaaatatttgcctctaccaatctcactgagattaa
gi|2 : CT-CAG-TGA-G-AT--G-GT--A---------AA-G--------GC---TAAA---T-ATTT--GGAC-T--G-GT------------------------G-CTT-CA---C---A---TCTC--------AG-A--------AA-T-G-T--AC---C-AA----C-TTA-T-TC-GGG--AA-AT-TTG-CCT--C--AACTT----CG-TCG----CT-GT------TGGGCGA-TT--A-AAG-A-AC-TT-AA--ACTGAACATc
gi|16 : aatctcagtagatggtaaaggctaaatatttggactggtccgccttcaccatctcagaccaattcacaacaaccttagtcggaaatttgcctcaacttccgtcgcgctgttgcgataaaataacattaaactgaacatcttgcccgcttcaaaatttcaccttagcatcctataacgtcccctatcacaataaaccttcatttctataccttttcataagtgttaaatcccatttaaattcaggttggttatttcacgtgcattttcaatgatttgtgctttctcaaacactgaacgagttccaaattgatatattcgaatcaactagtcttaaggtaacaacctgttattttacttttaagtgaccttactttcaaaagcattaaaaaaatcatgaaaaacaaatattaacaataggaaactaacgtaatttcaaaacagtctatctgaaaacagttttaaaaccgttctgtacctcaacgactaattccatagtacaaactattcaaatttgaactcttcagcacgaaaatggacgtgaaaataacgataccttgatttaaattggatttaacactatgaaaaagtaaaaagcaagttttatgtacagtgagttagtaggagtctaaggtaaaatttgaatcgtgcaT-CAGGTGA-A-AT--C-A---A---------AA-G--------CC---TAAA---T-ATTTT-GGAC-TTTG-AT--------------CC--------GCCTT-CAC--C---A---TCTC--------AG-AACC----CAA-T-GTTC-AC-A-CAAA-C--C-GTA-T-TC-GGA-AA------TG-CCT--TCAAACTTC---CG-TCGACC-CC-GTTTTGAGT--GCGA-TT--A-ttt
gi|9 : agccattccaca-TGA-G-AT--G-G---A---------AA-G--------GC---TAAAA--T-ATTT--GGAC-T--G-GT--------------C---------GCCTT-TAC--C---AA--TCTC--------GG-A--C----CAA-T-G-TC-AC-ATC-AATC--C-TTAAT-TC-GGG-AAA-AA-TTG-CCT--C--AACTTC---CG-TCG--C-CT-GT------T--ACGA--T--A-AAATACAC-TT-AA--ACTGAACATTCTGCC
gi|20 : ---------GA-G--------GC---TGAA---T-AGT----AAC-T--G--T--------------T---------GCCTT--AT--C---AGAATCTC--------GG-A--C----CAA-T-G-CA-TC-A-C-AA-A--G-TAA-T-TT-GGG-AAA-TC-TTG-CCT--G--AATTGT---GG-CCG--T-TT-GT------cgcttcaaatttttcaccttagacatcctaaactaactccctgtccaccagtaaattgcatttcttaccttttcatagtgttaaatccaatttaaatcaagttcgttattttcaacgtcattttgtgctgaagagttccaaattgatagtt
gi|40 : tcttc---------GA-G--------GC---TGGA---T-ATTT--GAAC-T--G-A---------------C---------GCCTC-TTC--C---aata
gi|15 : c--------GC---TAAT---TTATTT--GGAC-T--G-GT--------------C---------ACCTC-TTC--C---AAA-TCTC--------AG-A--CTGGTCAG-T-G-TC-AC-A-C-AA-A--G-TGA-T-TC-GGG-AAA-TC-TTG-CCT--G--AACTTC---TG-CCG--C-TT-GT------T--GCGA-g
gi|3 : cggcgagattcatcgaggctgccTTT--GGAC-T--G-GT--------------C---------GCCTT-CACCAC---A---TCTCCGCAGGAGGG-G--C----TGA-T-G-CACAC---C-AC-C--C-TTC-T-TC-GGGCCCA-CT-TTGCCCT--C----CCTCACTCG-T-G--C-CT-GT------T--G-GA-TT--ACCCATA-CC-TT-AACCCCTGAAAATCTTGCCcatcctactaaccccccatcactatatttcttacctttacatagtgttaaatctcaaattaaatcaagtt
gi|2 : CTTCAAAA--TT-TCAC-CT--T--AG---C---ATCC--TA--TAACGTCCC-C--T-ATC-A-C-AATAA-ACC-TT-C--A--TTTC--T--ATAC-CT---TT--T-CATA-AG------TG-TTAAATCCC---------AT-T----TAA--------ATTCA-GGTT---G--G-TTA-TTT-CACGTGCATTTTCA----ATGAT--------T--T---------GTGCTT-T-CTCA-AAC-ACTGAACGA-GTTCC-----------------A-AA------T--------TG-A-TA------TA-T------TC---GAA--T---C---AA---CTA----------GTC-TT-AAG-G-TAA--CA--A--C-CTG-TTATT-TT----ACTTTTAAGTGAC-CTT-ACTT--TCA-AAAGCATTAA-AAAAATCAT--GAAAAACAAATATTAAC-AATAGGAAACTAACGT-AATTTCAAAACAG------TCTATCTGAAAACAGTTTTA-AAACCGTTC-TG-TA--CCTCAACGACTAATTCC-ATAGTA-CAAA-C-TAT-------TCA------AA------TT--TGAA-CTC-TTC-----------AG-------------C----ACGAA---------A---------A---T--------GGACG----------------T-GA-AAATAA--CG--ATACCTTGA-TTTAA-AT------T---GGA--TTTAAC-A---------CT---ATG-AAA---A---A-GT-A-AAAA----GCAA-GTT-TTA-T-G-T--ACA-GTGA--GTTA-G-T--A-----GGA------GTC--T--AAG-GT---AAAA--T-TTGA-ATCGTGC-A--A-TGTTCA--G-TTT-AA-GT-T---C-TTT-AATCGCCCA-A-CA--G--CG-----A-C-GAAGTT--G--AGGCAA-A---TTTCCC-GA-A-TAA----G-TT-G--G-TA--C-A-TT--------T-CT--------GAGA---T-----GTG-AA-GC------------------------AC-C--A-GTCC--AAAT-A---TTTA---GC--------C-TT---------T--AC-C--AT-C-TCA-CTG-AGcgcttcacattttcaccttagacaactcctagctcaccctacatcaatacaccgttgcaaatttcttaaccttttccaaatagtggttcactcccaccacacattactcacggttgtttattttcacgtccattttcacatgattgtgctttccacactgggaacgttacaaattgatagtttgggtaaaactaaatcaatcactagtcttaaaagtcagaaacctgttatctctactttagtgacttacttgtcacaaagcatttaaaactagaaaaacaacattaacaaataggaaactacgtaaatttcaaatagtctatctgaaaacatttttaacgttctgtacctcagactattctgtcacaaactagtcatttggaacatcagcacaataatcggacgtgagaaataacactgatttaaattgggattttctgttaataagcaaagagtaagaaatgcaagttttattgtgaagggagttagtaggatgtgtacggaagagtgaacactcttgaagcgggcgaagatgttagtttcagg
gi|4 : aatctcagtagatggtaaaggctaaatatttggactggtccgccttcaccatctcagaccaattcacaacaaccttagtcggaaatttgcctcaacttccgtcgcgctgttgcgataaaataacattaaactgaacatcttgcccgCTTCAAA--TTTTTC-CACC--T--TAG-AC---ATCC--TA-CTAAC---TC-CC-T-GTC-A-C-AATAAGAAT-TTGC--A--TTTC--TTTA--C-CT---TT--T-CATA--G------TG-TTAAATCCA--A------TT-T----TAA--------A-TCA-AGTT---C--G-TTA-TTT-T-CACG-----TCC----AT--TCAATGATTT--T---------GTGC-T-T-TTCTCAACCACTGAA-GA-GTTTC----------------CA-AA------T--------TG-A-TA---GTTTT-G------TA---CTA--T---C---AAA--CTA----------GTC-TT-AAG-GAT-A--CA-GG--C--TGTT-ATCTTT----ACTTTTCAATGAC-TTTTACTTTGTCACAAAGCATT-TTCAAAATCATTTGAAAAACAAA-ATTAACAAATAGAAAACT-ACGTAAATTTC-AAACAG------TCTATCTGAAAACATTTTTAAAAACCGTTCATGTTA--CCTCAA-GACTAA-TAC-ATAGTACCAAA-C-TA--------TCA------Attt
gi|3 : aatctcatggagatggtaaaagctaaatatttttggacctggcgcttttaccatctcaaaccaatgtcacaacttattccgggaaaatttccctcaacttccggtcgctgttgcgattaaaaaataacttaaaactgacatctttgccgCTTCACA--TTT-TCAC-CT--T--AGA-CA---ACTC-CTAGCTCAC----C-C--T-A-C-ATC-AATAC-ACCGTTGC--AAATTTC--TTAA--C-CT---TTT-C-CAAATAG------TGGTTCACTCCC--ACCACACAT-T------A--------C-TCACGGTT---G--T-TTA-TTT-T-CACG-----TCC----AT--T--------T--TCACATGATTGTGC-T-T-TC---CAC-ACTGGG-AACGTTAC----------------AA-A-------T--------TG-A-TA---GTTTG-GG-----TAAAACTAAAT---C---AATCACTA----------GTC-TT-AAAAG-T----CA-GAAAC-CTGTT-ATCTCT----ACTTT--AGTGAC-TT--ACTT-GTCACAAAGCATT-T--AAAACTA---GAAAAACAAC-ATTAACAAATAGGAAACT-ACGTAAATTTC-AAATAG------TCTATCTGAAAACATTTTT--AA--CGTTC-TG-TA--CCTC-A-GACTAT-TCT-GT--CA-CAAA-C-TAG-------TC-------AT------TT--GGAA---C-ATC-----------AG-------------C----AC-AAT--------A---------A---TC-------GGACG----------------T-GAGAAATAA--C-----A-C-TGA-TTTAA-AT------T--GGGA--TTT-----TC-TGT-TAAT---AAG-CAA---A---GAGT-A-AGAAAT--GCAA-GTT-TTATT-G-TG-A-A-GGGA--GTTA-G-T--A-----GGAT---GTGTA--CGGAAGAGTG--AACACTC-TTGA-AGCGGGCGAAGA-TGTT-A--G-TTTCAG-G
gi|3 : tttggactggtcgccttcaccacatctccgcaggaggggctgatgcacaccacccttcttcgggcccactttgccctccctcactcgtgcctgttggattacccataccttaacccctgaaaatcttgcccgCTTCAAGAGTGT-TCACTCT--TCCGTACAC---ATCC--TA-CTAAC---TC-C--C-TTC-A-C-AATAA-AAC-TTGC--A--TTTC--TT-A--CTCT---TTGCT-TATT-AA------CA-GAAAATCCC--A------AT-T----TAA--------A-TCA--GT-------G-TTA-TTT-CTCACG-----TCCG---AT--TA-------T--T---------GTGC-T-------------------GATGTTCC----------------AA-A----------------TG-ACTA---GTTTG-T------GA---CAG----------AA----TA----------GTC-T--GAG-G-T-A--CA-GA--
gi|9 : tttggactggtcgccttcaccacatctccgcaggaggggctgatgcacaccacccttcttcgggcccactttgccctccctcactcgtgcctgttggattacccataccttaacccctgaaaatcttgcccgcttcacattttcaccttagacaactcctagctcaccctacatcaatacaccgttgcaaatttcttaaccttttccaaatagtggttcactcccaccacacattactcacggttgtttattttcacgtccattttcacatgattgtgctttccacactgggaacgttacaaattgatagtttgggtaaaactaaatcaatcactagtcttaaaagtcagaaacctgttatctctactttagtgacttacttgtcacaaagcatttaaaactagaaaaacaacattaacaaataggaaactacgtaaatttcaaatagtctatctgaaaacatttttaacgtCTTCAAA--TTTTTCAC-CT--T--AGA--C---ATCCTAAA-CTAAC---TC-CC-T-GTCCA-CCAGTAA-A---TTGC--A--TTTC--TT-A--C-CT---TT--T-CATA--G------TG-TTAAATCC---A------AT-T----TAA--------A-TCA-AGTT---C--G-TTATTTT-CA-ACG-----T-C----AT--T--------T--T---------GTG----------------CTGAA-GA-GTTCC-----------------A-AA------T--------TG-A-TA---GTTcgggcgaagatgttagtttcagg
gi|10 : tgagatggaaaggctaaaatatttggactggtcgcctttaccaatctcggaccaatgtcacatcaatccttaattcgggaaaaattgcctcaacttccgtcgcctgttacgataaaatacacttaaactgaacattctgcccgCTTCAGA--TTT-TCAC-CT--T--AGA--C---ATCT--TA-CTAAC---TC-C--TTATC-A-C-TATAA-AA--TTGC--A--TTTC--TT-A--T-CT---TT--A-TGTA--G------TG-TTCAGTCCC--A------AA-T----TAA--------A-TCA-AGTT---G--G-TTA-TTT-T-CACA-----TAT----AG--T--------T--T---------GTGCTT-T-CTC--AAC-ACTGAA-G
gi|2 : AAATTT--TAC-CT--T--AGA-CT-----CC--TA-CTAAC---TCAC--T-GT--A-C-A-TAA-AAC-TTGC-----TTTT--T--A--C-TT---TT--T-CATA--G------TG-TTAAATCC---A------AT-T----TAA--------A-TCA-AGGT---ATCG-TTA-TTT-T-CACG-----TCC----AT--T--------T--TC--------GTG----------------CTGAA-GA-GTT-C----------------AA-AT------T--------TGAA-TA---GTTTG--------TA---CTA--TG--G---AA---TTA----------GTCGTT-GAG-G-T-A--CA-GA--A-CGGTTTcaggcaagaaattcagtttcagccattttaatcgcaacaagtggcagaagttgaggcaagatttcccaaatcactttatgtgacactggtctgagattcagagaggtgaccagtccaaataatgagccttgtcgaatctcactgaga
gi|11 : aatctcagtagatggtaaaggctaaatatttggactggtccgccttcaccatctcagaccaattcacaacaaccttagtcggaaatttgcctcaacttccgtcgcgctgttgcgataaaataacattaaactgaacatcttgcccgcttcaaaatttcaccttagcatcctataacgtcccctatcacaataaaccttcatttctataccttttcataagtgttaaatcccatttaaattcaggttggttatttcacgtgcattttcaatgatttgtgctttctcaaacactgaacgagttccaaattgatatattcgaatcaactagtcttaaggtaacaacctgttattttacttttaagtgaccttactttcaaaagcattaaaaaaatcatgaaaaacaaatattaacaataggaaactaacgtaatttcaaaacagtctatctgaaaacagttttaAAATTTA-CAC-CT--T--AGA-ATC--ATCC--TA-CTAAC---AC-CA-T-GTC-G-C-AATAAGAAC-TTGC--A--TTTCT-T--A--C-CT---TT--G-CAT--AG------TG-TTAAATCCCAAA------AT-T----TAA--------A--CA-AGTT---G--GTTTA-TTT-gaatcgtgcaatgttcagtttaagttctttaatcgcccaacagcgacgaagttgaggcaaatttcccgaataagttggtacatttctgagatgtgaagcaccagtccaaatatttagcctttaccatctcactgagttt
gi|22 : ttttcagcgagattcgtcgagaagcgagtaaatatttggactgagccgtctctacgaatctcgaccaaatgtcacaactacttattcggtgaaatttgcctcaacttggccgcttgttgcgatttaaaatggcttaaactgaacattcttgccgattcAAATTTTTCAT-CT--T--AGA--C---ATCT-AT---TAAC---TC-CCTT-ATC-G-CTGATTA-AAC-TTGC--A--TTTCTAT--A--C-CT---TT----TACATAGACT---CG-TTAAATCCtc
gi|7 : cAATTT-TCAT-CT--T--AGA--C---ATCC--TA-CTAAC---TC-CC-T-ATT-A-C-TATAA-AAC-TTGT--A--TTTC--aa
gi|8 : acatacttgaattagtcttgaagtatacagacctgtctatctctacttttaaatgactttactcatcacaaagcatttcaaaatcatgaaaatcaattgacaaatagaaaactacgtaaatttcaaccagtctgactctgtctgaggacagttttagacactagatggtacaaactatcaatttggaactcttcagtgttgagaaagcacaaaatatatttCAC-CT--T--AGA--C---ATCC--TA-CTAAC---TC-CC-T-ATC-G-C-GATAA-AAC-TTGC--A--TTTCT-T--A--C-CT---TT--A-CATA-A-------TG-TTAAATCCC--AC-----AT-T----CAATAGGGTCGA-TCA-TTTTCAAA--C-TTA-TTG-CAAATGGCT--TCCCGGAAT--T--------T--C---------ATGC-TCT-CTC--AAC-ACTGAA-GA-GTTCC----------------AATAG------TCTATTTCATA-A-TA---GTATG-TAC----TA---CTA--T---T---TA---GTAAGAAAACAGTGTC-TG-AAT-G-T-A--CA--A--CACTTTCTAAAGCG----GCCTTCAAATGACAACC-ACTG-CTCACAAAGCACT-T-TAG---CAT--GAGATTTAAA-AACAATATAGAGAAAACT---GTCAAATTC-TAACAA------TCTATagaagtgagcaagaaattcactttaattgcaactgaagtacaggcaagatttcccaaaatcactatatgac
gi|15 : T--T--GCG-AC---ATCC--TA-CTAAC---CC-C--CCATC-A-C-TATA---------------TTTC--TT-A--C-CT---TT--A-CATA--G------TG-TTAAATCTC--A------AA-T----TAA--------A-TCA-AGTT---t
gi|13 : cggcgagattcatcgaggctgccgctaatttatttggactggtcacctcttccaaatctcagactggtcagtgtcacacaaagtgattcgggaaatcttgcctgaacttctgccgcttgC-C--T-ATG-A-T-TATAA-ATC-TAGA--A--TTTC--TT-A--C-CT---TT--A-CATA--G------TG-TTAAATCCC--A------AAAG----TAA--------A-TCA-AGAT---T--G-TTA-TTTTCAAACA-----T------AT--T--------CAAT---------AT-T-T-T-CTC--AAC-ATTGAA-GA-GTTCC----------------AA-AAATCTACT--------CC-A-TATTAGTTTG-T-------A---CTA--T---C---CA---TTG----------GCC-TT-GAG-G-T-A--CA-AA--A-CTGTCTA
gi|30 : -C--T-ATC-A-C-GATAA-AAC-TTGC--A--TTTCT-T--A--C-CTAAATT----TACATAG------TG-TTAAATCCgactaaggtaaatcaaagtccttaaagttctgaaacgag
gi|7 : C-TTGCTCA--CTTC--T--A--A-TT---TT--CATCTT-AGACATCCTA-CTAACTCCC--T------AT-TACTATAA--------A-----ACTT---G-----TA-TTT-CAAATA-----T------AT--T--------T--T---------GTGC-T-TTCTC--AAC-ACTGAA-GA-GTTCC-----------------A-AA------T--------TG-A-TA---GTTTG-TACCATCTA---GTG--T---CTAAAA---CT-----------GTC-CT-CAG-----A--CA-GA--
gi|4 : acatacttgaattagtcttgaagtatacagacctgtctatctctacttttaaatgactttactcatcacaaagcatttcaaaatcatgaaaatcaattgacaaatagaaaactacgtaaatttcaaccagtctgac------T--------TG-A-TA---GTTTG-G------TA---CTA--T---G---TA---TTA----------GTC-TT-GAG-G-TAA--CATGA--A-CGGTTTaaattcactttaattgcaactgaagtacaggcaagatttcccaaaatcactatatgac
gi|7 : aatctcatggagatggtaaaagctaaatatttttggacctggcgcttttaccatctcaaaccaatgtcacaacttattccgggaaaatttccctcaacttccggtcgctgttgcgattaaaaaataacttaaaactgacatctttgccgcttcaaatttttccaccttagacatcctactaactccctgtcacaataagaatttgcatttctttaccttttcatagtgttaaatccaattttaaatcaagttcgttattttcacgtccattcaatgattttgtgcttttctcaaccactgaagagtttccaaattgatagttttgtactatcaaactagtcttaaggatacaggctgttatctttacttttcaatgacttttactttgtcacaaagcattttcaaaatcatttgaaaaacaaaattaacaaatagaaaactacgtaaatttcaaacagtctatctgaaaacatttttaa------TA---CT---T---G---AA---TTA----------GTC-TT-GAA-G-T-ATACA-GA--C-CTGTCTATCTCT----ACTTTTAAATGAC-TTT-ACTC-ATCACAAAGCATT-T-CAAAATCAT--GAAAATC--A-ATTGACAAATAGAAAACT-ACGTAAATTTC-AACCAGTCTGACTCTGTCTGAGGACAGTTTT--AGAC---------------------ACTAG-----ATGGTA-CAAA-C-TA--------TCA------AT------TT--GGAA-CTC-TTCAGTGTTGAGAAAG-------------C----AC-AA---------A---------A---T--------ATATT----------------T-G--AAAT-A--CA--A-G-TTTTA-TAGTA-AT------A--GGGA--GTTAGT-A-G-GATGT-CTAAGATG-AAA---A------T-T-AGAAGTGAGCAA-G
gi|31 : acaT----ACTTT-AAATGAC-TTTCACTT-ATCACAAAGCATT-T-CAAAAACGT--GAAAAaaattcactttaattgcaactgaagtacaggcaagatttcccaaaatcactatatgac
gi|7 : T--AGACAGGTC-TG-TATACTTCAA-GACTAA-TTC-A-AGTA-
gi|13 : acaT--AGACAGTTT-TG-TA--CCTCAA-GGCCAA-TGG-ATAGTA-CAAA-C-TAATATGGAGTAG------AT------TTTTGGAA-CTC-TTC-----------AA-------------TGTTGAG-AA---------A---------ATATT--------GAATATGTT------------T-GA-AAATAA--CA--A-T-CTTGA-TTTACTTT------T--GGGA--TTTAAC-A---------CT---ATG-TAA---A---G-GT-A-AGAAAT--TCTA-GAT-TTATA-A-TC-ATA-GGGA--CTAAGG-T--A------AATCAAA-GTCCTT--AAA-GT---------T-CTGA-AACGAGtctctacttttaaatgactttactcatcacaaagcatttcaaaatcatgaaaatcaattgacaaatagaaaactacgtaaatttcaaccagtctgactctgtctgaggacagttttagacactagatggtacaaactatcaatttggaactcttcagtgttgagaaagcacaaaatatatttgaaatacaagttttatagtaatagggagttagtaggatgtctaagatgaaaattagaagtgagcaagaaattcactttaattgcaactgaagtacaggcaagatttcccaaaatcactatatgac
gi|4 : C-TG-TAT-CCTTAA-GACTAG-TTTGATAGTA-CAAAAC-TA--------TCA------AT------TT--GGAAACTC-TTC-----------AGTGGTTGAGAAAAGC----AC-AA---------A---------A---TCATTGAATGGACG----------------T-GA-AAATAA--CG--A-A-CTTGA-TTTAA-AA------T--TGGA--TTTAAC-A---------CT---ATG-AAA---A---G-GTAA-AGAAAT--GCAA-ATTCTTATT-G-TG-ACA-GGGA--GTTA-G-T--A-----G-----GATGTC--T--AAG-GTGGAAAAA--T-TTGA-AGCGGCA-AAGA-TG-TCA--GTTTT-AA-GT-TATTT-TTT-AATCG--CA-A-CA--G--CG-----ACCGGAAGTT--G--AGGGAA-A-T-TTTCCCGGA-A-TAA----G-TT-G-TG--A--C-A-TTG----G--T-TT--------GAGA---T---G-GTA-AAAGC---------G---------------C-C--AGGTCCAAAAAT-A---TTTA---GC--------T-TT---------T--AC-C--AT-C-TCC-ATG-AGA
gi|2 : aa-TA--CCTTAA-GACTAG-T----TGATT-CGAA-TATA--------TCA------AT------TT--GGAA-CTCGTTC-----------AGTGTTTGAGAAAG-C----AC-AA---------ATCATTGAAAA---T--------GCACG----------------T-GA-AA-TAA--CC--A-A-CCTGAATTTAA-AT---------GGGA--TTTAAC-ACT-TAT----------G-AAA---A---G-GT-ATAGAAAT--G-AA-GGT-TTATT-G-TG-ATA-GGGGACGTTA---T--A-----GGAT-----G-C--T--AAG-GTG--AAAT--T-TTGA-AGCGGGC-AAGA-TGTTCA--G-TTT-AATGT-TA--T-TTT-A-TCG--CA-A-CAGCG--CG-----A-CGGAAGTT--G--AGGCAA-A-T-TT--CC-GA-C-TAA-G--G-TT-G-TTGTG--A-A-TTG----G--T-CT--------GAGA---T---G-GTG-AAGGC---------GG-------------AC-C--A-GTCC--AAAT-A---TTTA---GC--------C-TT---------T--AC-C--AT-C-T-A-CTG-AGAgctgttatctttacttttcaatgacttttactttgtcacaaagcattttcaaaatcatttgaaaaacaaaattaacaaatagaaaactacgtaaatttcaaacagtctatctgaaaacatttttaaaaaccgttcatgttacctcaagactaatacatagtaccaaactatcaa
gi|6 : aaACTAA-ATA-GTAGTA-CAAA-C-TT--------TTATGAAATATACTA--TT--GGAA-CTC-TTC-----------AGTGTTGAGAGAG--C----AT-GA---------A---------A---TTCC-----GGAAGCCATTTGCAATAGGTTT-GA-ATATGAATCG--A-A-CCTA---TTAA-ATG-----T--GGGAATTCTAAC-ACT------------ATG-TAA---ATTTA-GT-A-AGAA-T--GCAA--TT-TTATC-A-GG-ATA-GGGA--GTTA-G-T--ATCGCAGG----GATGTC--T--AAGTGTG--AGA---T-TTGAGAGCGGGC-AAGA-TATTCA--G-TTT-------TA--CCTTT-AATCG--CAGA-CAA-G--CG-----G-CCGAAGAT--GGAAGGCAA-A-AATTTCCC-GCTA-TAAAG--G-TT-G-TGTTA--C-A-TTG----G--TTCT--------GATA---T---TTGAA-GAGGC---------G--------------GC-C--A-GTCA--AAAT-A---TGTA---GC--------C-TC---------G--ACGA--AT-C-TCA-CTGTAGAacaacctgttattttacttttaagtgaccttactttcaaaagcattaaaaaaatcatgaaaaacaaatattaacaataggaaactaacgtaatttcaaaacagtctatctgaaaacagttttaaaaccgttctgtacctcaacgactaattccatagtacaaactattcaaatttgaactcttcagcacgaaaatggacgtgaaaataacgataccttgatttaaattggatttaacactatgaaaaagtaaaaagcaagttttatgtacagtgagttagtaggagtctaaggtaaaatttgaatcgtgcaatgttcagtttaagttctttaatcgcccaacagcgacgaagttgaggcaaatttcccgaataagttggtacatttctgagatgtgaagcaccagtccaaatatttagcctttaccatctcactgagttt
gi|8 : cACTAA-ATA-GTAGTA-CATA-C-TA--------TTATGAA--ATAGACTATT--GGAA-CTC-TTC-----------AGTGTTGAGAGAG--C----AT-GA---------A---------A---TTCCG----GGAAGCCATTTGCAATAAGTTT-GA-AAATGAT-CG--A-C-CCTA---TTGA-ATG-----T--GGGA--TTTAAC-ATT------------ATG-TAA---A---G-GT-A-AGAAAT--GCAA-GTT-TTATC-G-CG-ATA-GGGA--GTTA-G-T--A-----G-----GATGTC--T--AAG-GTG--tt
gi|3 : -CAAA-C-TA--------TCA------AT------TT--GTAA-CGT-TCCCAGTGTGGAA-AG-------------C----AC-AATCATGTGAAA---------A---T--------GGACG----------------T-GA-AAATAAA-CA--A-C-CGTGA-GT--A-ATGTGTGGT--GGGA--GTGAACCACT--AT-T--T---G-G-AAA---A---G-GTTA-AGAAATTTGCAACGGT-GTATT-G----ATG-TAGG--GTGA-GCT--A-----GGA---GTTGTC--T--AAG-GTG--AAAA--T-GTGA-AGCGGGC-AAGA-TTTTCAGGG-GTT-AA-GG-TA--TGGGT-AATC---CA-A-CAG-G--CACGAGTG-AGGGAG--------GGCAA-AGT-GGGCCC-GA-A-GAAGG--G-TG-G-TG-TG--C-A-TCA----G--C-CCCTCCTGCGGAGATG-T---G-GTG-AAGGC---------G--------------AC-C--A-GTCC--AAAaagaaaacagtgtctgaatgtacaacactttctaaagcggccttcaaatgacaaccactgctcacaaagcactttagcatgagatttaaaaacaatatagagaaaactgtcaaattctaacaatctatt
gi|9 : AA-C-TA--------TCA------AT------TT--GGAA-CTC-TTC-----------AG-------------C----AC-AA---------A---------A---T--------G-ACG----------------TTGA-AAATAA--CG--A-A-CTTGA-TTTAA-AT------T--GG-A--TTTAAC-ACT------------ATG-AAA---A---G-GT-A-AGAAAT--GCAA---T-TTACT-GGTGGACA-GGGA--GTTA-G-TTTA-----GGAT-----GTC--T--AAG-GTG--AAAAA-T-TTGA-AGCGGGC-AGAA-TGTTCA--G-TTT-AA-GTGTA--T-TTT-A-TCG--TA-A-CAG-G--CG-----A-CGGAAGTT--G--AGGCAA-T-T-TTTCCC-GA-ATTAA-G--GATT-GATGTGA--C-A-TTG----G--T-CC--------GAGAT--T---G-GTA-AAGGC---------G--------------AC-C--A-GTCC--AAAT-AT--TTTA---GC--------C-TT---------T---C-C--AT-C-TCA-ggtaaaactaaatcaatcactagtcttaaaagtcagaaacctgttatctctactttagtgacttacttgtcacaaagcatttaaaactagaaaaacaacattaacaaataggaaactacgtaaatttcaaatagtctatctgaaaacatttttaacgttctgtacctcagactattctgtcacaaactagtcatttggaacatcagcacaataatcggacgtgagaaataacactgatttaaattgggattttctgttaataagcaaagagtaagaaatgcaagttttattgtgaagggagttagtaggatgtgtacggaagagtgaacactcttgaagcgggcgaagatgttagtttcagg
gi|10 : -----------AG-------------C----AC-AA---------A---------C---T--------ATATG----------------T-GA-AAATAA--CC--A-A-CTTGA-TTTAA-TT------T--GGGA--CTGAAC-ACTACAT-------------AA---A---G-AT-A-AGAAAT--GCAA--TT-TTATA-G-TG-ATA-AGGA--GTTA-G-T--A-----AGAT-----GTC--T--AAG-GTG--AAAA--T-CTGA-AGCAGGC-AAGA-AATTCA--G-TTT-CA-GC-CA--T-TTT-AATCG--CA-A-CAA-G--TG-----G-CAGAAGTT--G--AGGCAA-G-A-TTTCCC-AA-A-TCA-C--T-TT-A-TGTGA--C-A-CTG----G--T-CT--------GAGA---TTC-A-G-A-GAGGT---------G--------------AC-C--A-GTCC--AAAT-A---ATGA---GC--------C-T----------T--GT-CGAAT-C-TCA-CTG-AGA
gi|5 : cttcagtgttgagaa---------A---------A---T--------AGGTT----------------T-GA-ATATGAATCG--A-A-CCTA---TTAA-ATG-----T--GGGAATTCTAAC-ACT------------ATG-TAA---ATTTA-GT-A-AGAA-T--GCAA--TT-TTATC-A-GG-ATA-GGGA--GTTA-G-T--ATCGCAGG----GATGTC--T--AAGTGTG--AGA---T-TTGAGAGCGGGC-AAGA-TATTCA--G-TTT-------TA--CCTTT-AATCG--CAGA-CAA-G--CG-----G-CCGAAGAT--GGAAGGCAA-A-AATTTCCC-GCTA-TAAAG--G-TT-G-TGTTA--C-A-TTG----G--TTCT--------GATA---T---TTGAA-GAGGC---------G--------------GC-C--A-GTCA--AAAT-A---TGTA---GC--------C-TC---------G--ACGA--AT-C-TCA-CTGTAGA
gi|11 : taa-GA-AAATAAA-CC--A-A-CTTG--TTTAA-AT------TTTGGGA--TTTAAC-ACT------------ATG-CAA---A---G-GT-A-AGAAAT--GCAA-GTTCTTATT-G-CG-ACA-TGGT--GTTA-G-T--A-----GGAT--GAT-TC--T--AAG-GTG--TAAA--T-TTGA-ATCGG-C-AAGAATGTTCA--G-TTT-AA-GC-CA--T-TTTAAATCG--CA-A-CAA-G--CG-----G-C-CAAGTT--G--AGGCAA-A-T-TTCACC-GA-A-TAA-GTAG-TT-G-TG--A--C-ATTTG----G--T-C---------GAGAT--T---C-GTA-GAGAC---------G--------------GCTC--A-GTCC--AAAT-A---TTTACTCGC--------T-TC---------TCGACGA--AT-C-TCG-CTG-AAAAgcaaatggcttccggaatttcatgctctctcaacactgaagagttcctaatagtatatttcataaaagtttgtactagcttatttagtggagaaaactgtgtcttgaatgtacaacacttctaagcgtcctcaaccttcaaatgacaaccactgctcacaaagca
gi|12 : -GA-AAATAA--CACTA-A-CTTGA-TTTA---C------T--GTCA--TATAAC-A-------T-GT---ATG-TAA---T---G-GT-A-AGCCAT--GCAA-GTT-CCATA-A-TG-AAA-GGGA--TTTA-A-C--A-----AGGT-----GTC--T--AA--GTC--AAAA--TGTTGA-AGTGTGC-AAGA-AACTCA--G-ACT-AA-GC-CA--T-TTA-AATTT--TA-A-CAA-G--TG-----G-CCAAAGTT--C--AGACAA-G---TTTCCC-AA-A-TCA-C--T-TT-G-AGGTGA-C-A-TCG----G--T-TT--------AAGA---TTCAG-AT--GAGGC------------------------AT-C--A-ACCC--ACAA-A---TCCA---AT--------C-TT---------G--ACAA--AT-C-TCA-TCG-AGA
gi|15 : --A-A-CTTGA-TTTAA-TT------T--GAGA--TTTAAC-A---------CT---ATG-TAA---A---G-GT-A-AGAAA-------------TATA-G-TG-ATG-GGGG--GTTA-G-T--A-----GGATcaac
gi|22 : cggcgagattcatcgaggctgccgctaatttatttggactggtcacctcttccaaatctcagactggtcagtgtcacacaaagtgattcgggaaatcttgcctgaacttctgccgcttgttgcgacGGA--TTTAAC-G----AG-T-CT---ATGTAAA---A---G-GT-ATAGAAAT--GCAA-GTT-TAATCAG-CG-ATAAGGGA--GTTA-A-T--A-----G------ATGTC--T--AAG-ATGA-AAAA--T-TTG
gi|30 : GGA--TTTAAC-ACT------------ATGTAAATTTA---G-GT-A-AGAAAT--GCAA-GTT-TTATC-G-TG-ATaa
gi|7 : ctGAAAT--ACAA-GTT-TTATA-G-TA-ATA-GGGA--GTTA-G-T--A-----G-----GATGTC--T--AAG-ATG--AAAA--T-TAGA-AGTGAGC-AAGA-AATTC----------------A--C-TTT-AATTG--CA-A-----------------CTGAAGTA--C--AGGCAA-G-A-TTTCCC-AA-A-
gi|14 : acatacttgaattagtcttgaagtatacagacctgtctatctctacttttaaatgactttactcatcacaaagcatttcaaaatcatgaaaatcaattgacaaatagaaaactacgtaaatttcaaccagtctgactctgtctgaggacagttttagacactagatggtacaaactatcaatttggaactcttcagtgttgagaaagcacaaaatatatttGA--GTTA-G-T--A-----G------ACGCT--T--AAG-ATA--AAGA--T-TAGA-AGCGGGC-AGAA-AATTCA--G-TTT-AA-GT-CA--T-GTT-AATCG--CA-ATCAG-G--C-------------------------AA-G-A-TTTCCC-GA-A-TCA-C--T-TT-G-TGCGA--G-A-CTG----G--T-CT--------GAGA---TTC-G-G-A-AGAGC---------G--------------CC-A--A-GACC---AAT-A---TTCAG--GC--------C-TC---------G--AC-G--AA-CTTCG-CTG-atcactatatgac
gi|17 : taataTT-AG-AG-CA--T-TTT-A-TCG--CA-A-CAAAG--CG-----G-CGA-AGTC--G--AGGCAAGA-T----CCC-GA-A-TCA-C--T-TT-G-TGTGA--CAA-CTG----G--T-CG--------GAGATTTT---G-GAA-GAGACCT-------G--------------AC-C--A-GT-C--AA---A---TTTA---GT--------C-GC---------G--AC-----T-C-TCT-CGG-AGAactatgcaaaccgtcttctacaaatac
gi|15 : TCG--CA-A-CAA-G--CG-----G-CAGAAGTT--C--AGGCAA-G-A-TTTCCC-GA-A-TCA-C--T-TT-G-TGTGA--C-A-CTGACCAG--T-CT--------GAGATT-T---G-GAA-GAGGT---------G--------------AC-C--A-GTCC--AAATAA---ATTA---GC--------t
gi|16 : cggcgagattcatcgaggctgccA-A-CGG-GGTCG-----A-CGGAAGTTTGA--AGGCA-------TTTCC-GA-A-TAC-G--G-TTTG-TGT-GAAC-A-TTG----GGTT-CT--------GAGA---T---G-GTG-AAGGCG--------G--------------AT-CAAA-GTCCA-AAAT-A---TTTA---GG--------C-TT---------T---T-G--AT-T-TCACCTG-catcctactaaccccccatcactatatttcttacctttacatagtgttaaatctcaaattaaatcaagtt
gi|20 : agccattccaca-A-CAA-A--CG-----G-CCACAATT--C--AGGCAA-G-A-TTTCCC-AA-A-TTA-C--T-TT-G-TGATG--C-A-TTG----G--T-CC--------GAGATTCT---G-AT--AAGGC---------A--------------A--C--A-GTT----ACT-A---TTCA---GC--------C-TC---------ttgagtgcgatta
gi|19 : tcttc--T-CT---------AGA---------GTAGAAGGC---------G--------------AC-C--A-GTCC--AAAT-A---TTTA---GC--------C-TC---------T--AC-CA-AT-C-TCA-CTG-AGAaata
gi|26 : --T-CT--------GAGA---TTC-A-TTA-GAGAC---------A--------------AT-C--A-GTCC--AAAT-A---TTTA---GT--------C-TC---------G--ACGA--AT-C-TCA-CTG-AGAaggcgaccagtccaaatatttgcctctaccaatctcactgagattaa
gi|21 : ctaaT--------GAGA---T---G-GTA-AAGGCTAAATATTTGGACTGGTCGCCTTCAC-C--A-GTCC--AAAT-A---TTTA---GCCTTTACGGC-TT---------T--AC-C--AT-C-TCA-CTG-AGA
gi|21 : taa---T---G-GTG-AAGGC---------G--------------AC-C--A-GTCC--AAAT-A---TTTA---GC--------C-TT---------T--AC-C--AT-C-TCA-CTG-AGActgagatta
gi|25 : taatctcagtgagatggtaaagccgtaaaggctaaatatttggac---T---G-GTG-AAGGC---------G--------------AC-C--A-GTCC---AAT-A---TTTA---GC--------CTTT---------T--AC-C--ATCC-TCA-CTG-AGAtta
gi|40 : a---G-GAA-GAGGC---------G---------------T-C--A-GTTC--AAAT-A---TCCA---GC--------C-TC---------gatggatgaagcgacc
gi|24 : cA-AATGC---------A--------------AC-C--A-GTCC--AAAT-A---TTTA---GC--------C-TT---------G--ACAA--AT-G-TTA-CTG-AGAg
gi|23 : gcaaacgactgtatttggactgtccaA-GAGG----------G--------------GT-C--A-GTTC--AAAT-A---TCCA---GC--------C-TC---------G--ACAA--AT-C-TGG-CTG-AGAt
gi|19 : ctcagca-AAGGC---------G--------------AC-C--A-GTCC--AAAT-A---TTT----GC--------C-TC---------T--AC-CA-AT-C-TCA-CTG-AGAttaatgcacgactaacaagatgtaa
gi|32 : tctcagtgagattggtagaggctaaatatttggactggtcgccttctactctagAGGC---------G---------------T-C--A-GTCC--AAAT-A---TTCA---TC--------C-TC---------A--ATGA--AT-C-TCAGCTG-AGAttaa
gi|28 : ta---------G--------------AC-C--A-GTCC--AAAT-AAATTTTAC--GC--------C-TTCTACGGCTTT--AC-C--AT-C-TCA-CTG-AGA
gi|36 : C-C--A-GTCCA-AAAT-A----TTA---GC--------C-TC---------G--ACGA--AT-C-TCA-CTG-AGAtta
gi|27 : C-C--A-GTCA--TAAT-A---TTTA---GC--------C-TC---------G--ATGA--AT-C-TCA-ATG-AGAc
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): CAATATTCTATCGTAAAGTTGCACACATTTAAATTATGTATGTACATGGATAGTGTCTGCAAAAATGACAACCACAGCTCACAAAGCACTTCAGCATGAAATTTAAAAACAATA
Unaligned ( gi|29 ): GAAGGCACAAGTCTAAATATCCAGCCGAGCCAAAAAGAATCTCAACTGAGATTA
Unaligned ( gi|33 ): ATCTCGGTTGAGATTCTCTTTGGCTTGGCTGGATATTTGGACTTG
Unaligned ( gi|34 ): TCTAGGTTGAGATTCAGCTCGGCTGGATATTTGGACTGCCGC
Unaligned ( gi|35 ): CAGACCAAATATCCAGCCGAGCTGAATCTCAACCGAGATT
Unaligned ( gi|37 ): GTCCAAACATCCAGCTGAGCCGAATCTCCACCGAGATT
Unaligned ( gi|38 ): CCAAATATCCAGCCGAGCCGAATCTCAACCGAGATTA
Unaligned ( gi|39 ): AATCTCAGGTGAGATTCGGCTTGGCTGGATATTTGG
Alignments
lowQualScore : 22 11111 1111111111111111111111111 111 11111111 1111111 1 1 1 11111 1111 222222 333333333333 111 1111111 888888888888888888888888888 1 22222222 1 111 11111 11111 22222222 22222222222222222222222 66666666666666666666666666 1 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 111 1 11111 11 1 11 111111 11 22222222 1 666666666666 222222222 111 2222222 11 222222222 1 11111 11111 22222222222 111 11
lowQualScore : 4 2 2 2 11 2 00000 7777 2 2 55555 333 22 1 44 1 22 7777777777777777777777777 2 0 66666 555 33333333 4444444 5 5 666 2 0 0 5 5 333 0 5 55555 0 3333 77 66 5 444444 5 111111111111 4 7 111 2 2 6 8888888 4 000000000000000000000000000 1 5 00000000 2 4 2 4 66 1 333 9999 11111 44444 88888888 2 66666666666666666666666 5 55 88888888888888888888888888 1 5 5 5 66 5 5 5 5 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 5 5 5 9999 777 0 3 22222 0 7 55 0 00 9999 0 77 6 6 3 6 999999 1 99 33 8 6 3 6 22222222 0 1 6 1 6 555555555555 888888888 5 888 4 66 4 222 4 4 4 55 4 8888888 1 4 4 8 1 3 3 55 3 1 3 44 44 555555555 55 3 7 55 3 4 4 3 4 4 66 66 777 1 77 4 1 88888 55555 4 88888888888 77 4 4 222 66 1 66 5
lowQualScore : . . . . .. . ..... .... . . ..... ... .. . .. . .. ......................... . . ..... ... ........ ....... . . ... . . . . . ... . . ..... . .... .. .. . ...... . ............ . . ... . . . ....... . ........................... . . ........ . . . . .. . ... .... ..... ..... ........ . ....................... . .. .......................... . . . . .. . . . . ................................................................................................ . . . .... ... . . ..... . . .. . .. .... . .. . . . . ...... . .. .. . . . . ........ . . . . . ............ ......... . ... . .. . ... . . . .. . ....... . . . . . . . .. . . . .. .. ......... .. . . .. . . . . . . .. .. ... . .. . . ..... ..... . ........... .. . . ... .. . .. .
lowQualScore : 4 2 2 2 88 2 55555 8888 0 0 00000 555 88 9 55 9 66 5555555555555555555555555 4 3 11111 888 22222222 1111111 0 0 222 5 0 0 0 0 000 0 0 88888 5 2222 22 99 0 444444 7 555555555555 6 2 222 8 8 0 6666666 2 111111111111111111111111111 4 7 11111111 0 4 6 4 11 9 111 4444 77777 66666 00000000 8 55555555555555555555555 0 88 44444444444444444444444444 1 0 0 0 99 0 0 0 0 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 0 0 0000 666 0 2 55555 7 0 55 0 99 1111 3 99 7 7 2 7 222222 0 00 66 0 7 2 7 22222222 7 7 7 4 7 999999999999 666666666 7 111 4 33 4 999 0 0 0 55 0 4444444 0 0 0 0 4 6 6 44 6 0 3 66 66 000000000 00 6 3 00 6 0 0 7 0 4 33 11 555 6 22 0 9 33333 99999 4 44444444444 33 4 4 222 11 1 00 0
consensus : ATCT-CAG-TGAG-A-TTCG-T-----CG----A-GGC-TA-----AA---T--A-TTT--GGAC-T--GG-------------TC----------GCCTT-TAC--C--A---TCTC--------AGA--C----CAAT-G-TCACA-C-AACCTT-AT-TC-GGG-AAATTTT-G-CCT--C--AACTTC---CG-CCG--CTT-GT------TGCGATTA-AAATGGCTNAA--ACTGAATATCTTGCCCGCTCTCAAA-TCTCACACTTAGACATCCCTGCGA-TACTAACTTCAAA--TTT-TC-AC-CT--TAGAA---CA-TCC-TACTAA---CTCC-TATCACGATAA-ANC-TTGC--ATTTCT-T-ACC----TTTNC---ATAAGT-GTTAAATCCC-A------ATTCAA--------A-TCA-AGTT---GGTTA-TTTCANACGGCT--TCC-G--AT--T---------TCGTG-C-TCT--CTC-AAC-ACTGAA-GA-GTTCC-AA------A----AT--------TGA--------T---A-GTTT-GT--T---ACT--ATC---------------A---A-CTA----------GTCTT-AAG-G-T-A--CAG--AC-CTGTCTA-----TCTCTACTTTTAAATGAC-TTT-ACTTN-TCACAAAGCATT-T-CAAAATCAT--GAAAAACAAA-ATTAACAAATAGAAAACT-ACGTAAATTTC-AAACAG------TCTATCTGAAAACATTTTTA-AAACCGTTC-TG-TACCTCAA-GACTA----ATC-CGTAGTA-CAAACTA-TCAATTTGGAACTC-TTCAG-----------GCAC---------AA-AAT-GNACGT-GA-AAATAA-CG--A-A-CTTG-ATTTAAATT--GGGATTTAAC-ACT-----TATGNAAA-G-GTA-AGAAATGCAAGTT-TTA-TN-GT-GATA-GGGA--GTTAG--TAGGAT--GATGTCT--AAG-GTG-AAAA--T-TTGAAGCGGGC-AAG-ATGTTCAGTTTAA-GT-CATTTT-AATCG--CAACAA-GCGGCGGAAGTTGAGGCAAGNTTTCCCGAA-TAAN--G-TTG-TGTGACA-TTGGTCTGAGA---T---GGTAAAGGC-GAC-CAGTCCAAATA-TTTA---GC--CTCGAC-NATC-TCACTGAGAA
Reference ( family-605 ) : ATCT-CAG-TGAG-A-TN-G-T-----CG----A-GGC-TA-----AA---T--A-TTT--GGAC-T--GG-------------TC----------GCCTT-TAC--C--A---TCTC--------AGA--C----CAAT-G-TCACA-C-AACCTT-AT-TC-GGG-AAANTTT-G-CCT--C--AACTTC---CG-CCG--CTT-GT------TGCGATTA-AAATGGCTTAA--ACTGAACATCTTGCCCGCTCTCAAA-TCTCACACTTAGACATCCCTGCGA-TACTAACTTCAAAA-TTT-TC-AC-CT--TAGAA---CA-TCC-TACTAA---CTCC-TATCACGATAA-AAC-TTGC--ATTTCT-T-ACC----TTTNC---ATAAGT-GTTAAATCCC-A------ATTTAA--------A-TCA-AGTT---GGTTA-TTTCACACG-----TCC----AT--T---------TCGTG-C-T-T--CTC-AAC-ACTGAA-GA-GTTCC-AA------A----AT--------TGA--------T---A-GTTT-GT--T---ACT--ATC---------------A---A-CTA----------GTCTT-GAG-G-T-A--CAG--AC-CTGTTTA-----TCTCTACTTTTAAATGAC-TTT-ACTTN-TCACAAAGCATT-T-CAAAATCAT--GAAAAACAAA-ATTAACAAATAGAAAACT-ACGTAAATTTC-AAACAG------TCTATCTGAAAACANTTTT--AGACCGTTC-TG-TACCTCAA-GACTA----ATT-CGTAGTA-CAAACTA-TCAATTTGGAACTC-TTCAG-----------GCAC---------AA-AAT-GGACGT-GA-AAATAA-CG--A-A-CTTG-ATTTAAATT--GGGATTTAAC-ACT-----TATGNAAA-G-GTA-AGAAATGCAAGTT-TTA-TC-GT-GATA-GGGA--GTTAG--TAGGAT--GATGTCT--AAG-GTG-AAAA--T-TTGAAGCGGGC-AAG-ATGTTCAGTTTAA-GT-TATTTT-AATCG--CAACAA-GCGGCGGAAGTTGAGGCAAGNTTTCCCGAA-TAAG--G-TTG-TGTTACA-TTGGTCTGAGA---T---GGTAAAGGC-GAC-CAGTCCAAATA-TTTA---GC--CTCGAC-NATC-TCACTGAGAA
gi|1 : ATCT-CAG-TGAG-A-TG-G-T-----AG----A-GGC-TA-----AA---T--A-TTT--GGAC-T--GG-------------TC----------GCCTT-TAC--C--A---TCTC--------AGA--C----CAAT-G-TAACA-C-AACCTT-AT-TC-GGG-AAAATTT-G-CCT--C--AACTTC---CG-TCG--CCT-GT------TGCGATTA-AAATGGCTTAA--ACTGAACATCCTGTCGNNNNNNNNN-NNNNNNNNNNNNNNNNACGAACGGGTA-TAACTTCAAAAATTTATC-ACACT--TGGAA---TA-TCCATACTAA---CTCC-TATCACAATAA-AAC-TTGC--ATTTCT---ACC----TTTCT---ATAAGT-GTTAAATCCC-A------ATTTAA--------A-TCA-AGTT---GGTTA-TTTCACACG-----TCC----AT--T---------TTGTG-C-T-T--CT--AAC-ACTGAA-GA-GTTCC-AA------A----AT--------TGA--------T---A-GCTT-GT--T---ACT--GTC---------------A---A-CTA----------GTCTT-AAG-G-T-A--CAG--AC-CTGTTTA-----TCGTTACTTTTAAATGAC-TTT-ACTTG-TCACAAAGCATT-T-CAAAATCAT--GAAAAACAAA-ATTAACAAATAGAAAACT-ACGTAAATTTC-AAACAG------TCTATCTGAAAACATTTTT--AAACCGTTC-TG-TACCTCAA-GACTA----ATC-CATAGTA-CAAACTA-TCAATTTGGAACTC-TTCA------------GCAC---------AA-AAT-GGACGT-GA-AAATAA-CG--A-A-CTTG-ATTTAAATT--GGGATTTAAC-ACTTATTCTATGAAAA-G-GTA-AGAAATGCAAGTT-TTA-TT-GT-GATC-GGGA--GTTAG--TAGGATCCGATGTCT--AAG-GTG-AAAA--T-TTGAAGCGGGC-AAG-ATGTTCAGTTTAG-GT-TATTTT-AATTG--CAACAG-GCGGCGGGAGTTGAGGTAAATTTTCCCGAA-TAAG--G-TTG-TGTTGCA-TTGGTCTGAGA---T---GGTAAAGGC-GAC-CAGTCCAAATA-TTTA---GC--CTCTAC-CATC-TCACTGAGAA
gi|10 : AA-----------GCAC---------AA-ACT-ATATGT-GA-AAATAA-CC--A-A-CTTG-ATTTAATTT--GGGACTGAAC-ACT------ACATAAA-G-ATA-AGAAATGCAA-TT-TTA-TA-GT-GATA-AGGA--GTTAG--TAAGAT--G---TCT--AAG-GTG-AAAA--T-CTGAAGCAGGC-AAG-AAATTCAGTTTCA-GC-CATTTT-AATCG--CAACAA-GTGGCAGAAGTTGAGGCAAGATTTCCCAAA-TCAC--T-TTA-TGTGACA-CTGGTCTGAGA---TTC-AG-AGAGGT-GAC-CAGTCCAAATA-ATGA---GC--CTTGTCGAATC-TCACTGAGAt
gi|11 : cttcagtgttgaga-GA-AAATAAACC--A-A-CTTG--TTTAAATTTTGGGATTTAAC-ACT------ATGCAAA-G-GTA-AGAAATGCAAGTTCTTA-TT-GC-GACA-TGGT--GTTAG--TAGGAT--GAT-TCT--AAG-GTG-TAAA--T-TTGAATC-GGC-AAGAATGTTCAGTTTAA-GC-CATTTTAAATCG--CAACAA-GCGGC-CAAGTTGAGGCAAATTTCACCGAA-TAAGTAG-TTG-TG--ACATTTGGTC-GAGAT--T---CGTAGAGAC-GGCTCAGTCCAAATA-TTTACTCGCTTCTCGACGAATC-TCGCTGAAAA
gi|12 : -GA-AAATAA-CACTA-A-CTTG-ATTTA--CT--GTCATATAAC-ATG-----TATGTAAT-G-GTA-AGCCATGCAAGTT-CCA-TA-AT-GAAA-GGGA--TTTAA--CAAGGT--G---TCT--AA--GTC-AAAA--TGTTGAAGTGTGC-AAG-AAACTCAGACTAA-GC-CATTTA-AATTT--TAACAA-GTGGCCAAAGTTCAGACAAG-TTTCCCAAA-TCAC--T-TTGAGGTGACA-TCGGTTTAAGA---TTCAGAT-GAGGC--AT-CAACCCACAAA-TCCA---AT--CTTGACAAATC-TCATCGAGA
gi|13 : CC-TATGATTATAA-ATC-TAGA--ATTTCT-T-ACC----TTTAC---AT-AGT-GTTAAATCCCAA------AAGTAA--------A-TCA-AGAT---TGTTATTTTCAAACA-----T------AT--T---------CAATATT-T-T--CTC-AAC-ATTGAA-GA-GTTCCAAA------A----AT--------CTACTCCATATT---A-GTTT-G---T---ACT--ATC---------------C---A-TTG----------GCCTT-GAG-G-T-A--CAA--AA-CTGTCTA-----caac
gi|14 : ATA-GTGA--GTTAG--TAG------ACGCTT--AAG-ATA-AAGA--T-TAGAAGCGGGC-AGA-AAATTCAGTTTAA-GT-CATGTT-AATCG--CAA---------------TCAGGCAAGATTTCCCGAA-TCAC--T-TTG-TGCGAGA-CTGGTCTGAGA---TTC-GG-AAGAGC-GCC-AAGACC-AATA-TTCAG--GC--CTCGAC-GAACTTCGCTGAgactaaggtaaatcaaagtccttaaagttctgaaacgag
gi|15 : taata-CGG-CGAG-A-TTCA-T-----CG----A-GGC-TGCCGCTAA---TTTA-TTT--GGAC-T--GG-------------TC----------ACCTC-TTC--C--AAA-TCTC--------AGA--CTGGTCAGT-G-TCACA-C-AAAGTG-AT-TC-GGG-AAATCTT-G-CCT--G--AACTTC---TG-CCG--CTT-GT------TGCGAgcaaaccgtcttctacaaatac
gi|15 : --A-A-CTTG-ATTTAATTT--GAGATTTAAC-AC------TATGTAAA-G-GTA-AGAAA----------TA-TA-GT-GATG-GGGG--GTTAG--TAGGAT--Gcatcctactaaccccccatcactatatttcttacctttacatagtgttaaatctcaaattaaatcaagtt
gi|16 : cggcgagattcatcgaggctgccgctaatttatttggactggtcacctcttccaaatctcagactggtcagtgtcacacaaagtgattcgggaaatcttgcctgaacttctgccgcttgttgcga----A-GCC-TA-----AA---T--A-TTTT-GGAC-TTTGA-------------TCC---------GCCTT-CAC--C--A---TCTC--------AGAACC----CAAT-GTTCACA-CAAACCGT-AT-TC-GGA-AA----T-G-CCT--TCAAACTTC---CG-TCGACCCC-GTTTTGAGTGCGATTA-
gi|17 : agccattccacatcaggtgaaatcaaaATCT-CCG-AGAG-A----G-T-----CG----C-GAC-TA-----AA---T-----TT--G-AC-T--GG-------------TCAG--------GTCTC-TTC--C--AAAATCTC--------CGA--C----CAGTTG-TCACA-C-AAAGTG-AT-TC-GGG-A--TCTT-G-CCT--C--GACTTC----G-CCG--CTTTGT------TGCGA-TA-AAATG
gi|19 : ttagagTCT-CAG-TGAG-A-TT-GGT-----AG----A-GGC-TA-----AA---T--A-TTT--GGAC-T--GG-------------TC----------GCCTTCTAC---------TCT---------AGA--
gi|19 : ATCT-CAG-TGAG-ATTG-G-T-----AG----A-GGC--A-----AA---T--A-TTT--GGAC-T--GG-------------TC----------GCCTT-aggcgaccagtccaaatatttgcctctaccaatctcactgagattaa
gi|2 : tctcagtgagattggtagaggctaaatatttggactggtcgccttctactctag-TACCTTAA-GACTAGTTGATT-CG-AATA------TA-TCAATTTGGAACTCGTTCAGTGTTTGAGAAAGCACAAATCATTGAA-AAT-GCACGT-G--AAATAA-CC--A-A-CCTGAATTTAAA-T--GGGATTTAAC-ACT-----TATGAAAA-G-GTATAGAAATG-AAGGT-TTA-TT-GT-GATA-GGGGACGTTA---TAGGAT--G----CT--AAG-GTG-AAAT--T-TTGAAGCGGGC-AAG-ATGTTCAGTTTAATGT-TATTTT--ATCG--CAACAGCGCGACGGAAGTTGAGGCAAATTT--CCGAC-TAAG--G-TTGTTGTGA-A-TTGGTCTGAGA---T---GGTGAAGGCGGAC-CAGTCCAAATA-TTTA---GC--CTTTAC-CATC-T-ACTGAGAtaa
gi|2 : aaCTTCAAAA-TTT--C-AC-CT--TAG-----CA-TCC-TA-TAACGTCCCC-TATCACAATAA-ACC-TT-C--ATTTCTAT-ACC----TTTTC---ATAAGT-GTTAAATCCC--------ATTTAA--------ATTCA-GGTT---GGTTA-TTTCACGTGCATTTTCA----ATGAT---------TTGTG-CTT-T--CTCAAAC-ACTGAACGA-GTTCC--A------A----AT--------TGA--------T---ATATTC-G-------A----ATC---------------A---A-CTA----------GTCTT-AAG-G-TAA--CA---AC-CTG-TTA-----T-TTTACTTTTAAGTGAC-CTT-ACTT--TCA-AAAGCATTAA-AAAAATCAT--GAAAAACAAATATTAAC-AATAGGAAACTAACGT-AATTTCAAAACAG------TCTATCTGAAAACAGTTTTA-AAACCGTTC-TG-TACCTCAACGACTA----ATTCCATAGTA-CAAACTATTCAAATTTGAACTC-TTCA------------GCACG--------AA-AAT-GGACGT-GA-AAATAA-CG--ATACCTTG-ATTTAAATT---GGATTTAAC-AC------TATGAAAA-A-GTA-AAAA--GCAAGTT-TTA-T--GT--ACA-GTGA--GTTAG--TAGGA------GTCT--AAG-GT--AAAA--T-TTGAATCGTGC-A---ATGTTCAGTTTAA-GT-T-CTTT-AATCGCCCAAC-A-GCGAC-GAAGTTGAGGCAA-ATTTCCCGAA-TAA---G-TTG--G-TACA-TT--TCTGAGA---T----GTGAA-GC--AC-CAGTCCAAATA-TTTA---GC--CTTTAC-CATC-TCACTGAGacaacctgttattttacttttaagtgaccttactttcaaaagcattaaaaaaatcatgaaaaacaaatattaacaataggaaactaacgtaatttcaaaacagtctatctgaaaacagttttaaaaccgttctgtacctcaacgactaattccatagtacaaactattcaaatttgaactcttcagcacgaaaatggacgtgaaaataacgataccttgatttaaattggatttaacactatgaaaaagtaaaaagcaagttttatgtacagtgagttagtaggagtctaaggtaaaatttgaatcgtgcaatgttcagtttaagttctttaatcgcccaacagcgacgaagttgaggcaaatttcccgaataagttggtacatttctgagatgtgaagcaccagtccaaatatttagcctttaccatctcactgagttt
gi|20 : aatctcagtagatggtaaaggctaaatatttggactggtccgccttcaccatctcagaccaattcacaacaaccttagtcggaaatttgcctcaacttccgtcgcgctgttgcgataaaataacattaaactgaacatcttgcccgACAA-ACGGCCACAATTCAGGCAAGATTTCCCAAA-TTAC--T-TTG-TGATGCA-TTGGTCCGAGATTCT---GAT-AAGGC-AA--CAGTT--ACTA-TTCA---GC--CTCGAttt
gi|21 : tctATCT-CAG-TGAG-A-TG-G-TAAAGCCGTAA-A-GGC-TA-----AA---T--A-TTT--GGAC-T--GGTGAAGGCGACCAGTCCAAATATTTAGCCTT-TAC--C--A---TCTC--------Aaata
gi|21 : taATCT-CAG-TGAG-A-TG-G-T-----AA----A-GGC-TA-----AA---T--A-TTT--GGAC-T--GG-------------TC----------GCCTT-CAC--C--A---ctgagatta
gi|22 : taatctcagtgagatggtaaagccgtaaaggctaaatatttggacGGATTTAACGAGTC----TATGTAAAAG-GTATAGAAATGCAAGTT-TAA-TCAGC-GATAAGGGA--GTTAA--TAG------ATGTCT--AAG-ATGAAAAA--T-TTGta
gi|23 : ATCT-CAG-CCAG-A-TTTG-T-----CG----A-GGC-TG-----GA---T--A-TTT--GAAC-T--GA-------------CC-----------CCTC-Taa
gi|24 : ctcagcaATCT-CAG-TAAC-A-TTTG-T-----CA----A-GGC-TA-----AA---T--A-TTT--GGAC-T--GG-------------TT----------GCATT-Ttaatgcacgactaacaagatgtaa
gi|25 : gcaaacgactgtatttggactgtccaATCT-CAG-TGAGGA-TG-G-T-----AA----AAGGC-TA-----AA---T--A-TT---GGAC-T--GG-------------TC----------GCCTT-CAC--C--A---
gi|26 : ATCT-CAG-TGAG-A-TTCG-T-----CG----A-GAC-TA-----AA---T--A-TTT--GGAC-T--GA-------------TT----------GTCTC-TAA--TGAA---TCTC--------AGA--gatggatgaagcgacc
gi|27 : ctaATCT-CAT-TGAG-A-TTCA-T-----CG----A-GGC-TA-----AA---T--A-TTA--TGAC-T--GG-------------
gi|28 : agtgtaATCT-CAG-TGAG-A-TG-G-TAAAGCCGTAGAA-GGCGTA-----AAATTT--A-TTT--GGAC-T--GG-------------TC----------atgcatcttca
gi|3 : -TTT--GGAC-T--GG-------------TC----------GCCTT-CACCAC--A---TCTCCGCAGGAGGGG--C----TGAT-G--CACACC-ACCCTT-CT-TC-GGGCCCACTTT-GCCCT--C----CCTCACTCG--TG--CCT-GT------TG-GATTACCCATACCTTAACCCCTGAAAATCTTGCCCGCT-TCACATTTTCAC-CTTAGACAACTC--------CTAGCT-----------------------------CA-CCC-TAC------------ATCA--ATAC-ACCGTTGCAAATTTCT-TAACC----TTTTCCAAAT-AGTGGTTCACTCCC-ACCACACATT--A--------C-TCACGGTT---GTTTA-TTTT-CACG-----TCC----AT--TTTCACATGATTGTG-C-T-T---TC-CAC-ACTGGG-AACGTTAC--A------A----AT--------TGA--------T---A-GTTTGGG--TAAAACTAAATC---------------AATCA-CTA----------GTCTTAAAA-G-T----CAGAAAC-CTG-TTA-----TCTCTACTTT--AGTGAC--TT-ACTTG-TCACAAAGCATT-T--AAAACTA---GAAAAACAAC-ATTAACAAATAGGAAACT-ACGTAAATTTC-AAATAG------TCTATCTGAAAACATTTTT--AA--CGTTC-TG-TACCTC-A-GACTA----TTC-TGT--CA-CAAACTAGTC-ATTTGGAA--C-ATCA------------GCAC---------AATAATCGGACGT-GAGAAATAA-C-----A-C-TG-ATTTAAATT--GGGATTTTCT-GTTAA---TAAGCAAA-GAGTA-AGAAATGCAAGTT-TTA-TT-GT-GA-A-GGGA--GTTAG--TAGGAT--G-TGTACGGAAGAGTG-AACACTC-TTGAAGCGGGCGAAG-ATGTT-AGTTTCA-Gta
gi|30 : C-TATCACGATAA-AAC-TTGC--ATTTCT-T-ACCTAAATTTAC---AT-AGT-GTTAAATCCg
gi|31 : TACTTT-AAATGAC-TTTCACTTA-TCACAAAGCATT-T-CAAAAACGT--GAAAA
gi|32 : ATCT-CAGCTGAG-A-TTCA-T-----TG----A-GGA-TG-----AA---T--A-TTT--GGAC-T--GA--------------C----------GCCT
gi|36 : tTCT-CAG-TGAG-A-TTCG-T-----CG----A-GGC-T------AA---T--ATTTT--GGAC-T--GG-------------
gi|4 : ATCT-CAT-GGAG-A-TG-G-T-----AA----A-AGC-TA-----AA---T--A-TTTTTGGACCT--GG--------------C----------GCTTT-TAC--C--A---TCTC--------AAA--C----CAAT-G-TCACA----AC-TT-AT-TCCGGG-AAAATTT-C-CCT--C--AACTTC---CGGTCG--CT--GT------TGCGATTA-AAA--------------AATAACTT----------AAA-------ACT--GACATCTTTGC-----C--GCTTCAAAT-TTT-TCCAC-CT--TAGA----CA-TCC-TACTAA---CTCCCTGTCACAATAAGAAT-TTGC--ATTTCT-TTACC----TTTTC---ATA-GT-GTTAAATCCA-A------TTTTAA--------A-TCA-AGTT---CGTTA-TTTT-CACG-----TCC----AT--TCAATGATT-TTGTG-C-T-TTTCTC-AACCACTGAA-GA-GTTTC-CA------A----AT--------TGA--------T---A-GTTT-TG--T---ACT--ATC---------------A---AACTA----------GTCTT-AAG-GAT-A--CAG--GC--TGTT-A-----TCTTTACTTTTCAATGAC-TTTTACTTTGTCACAAAGCATT-TTCAAAATCATTTGAAAAACAAA-ATTAACAAATAGAAAACT-ACGTAAATTTC-AAACAG------TCTATCTGAAAACATTTTTAAAAACCGTTCATGTTACCTCAA-GACTA----ATA-CATAGTACCAAACTA-TCAAc
gi|40 : a-----CG----A-GGC-TG-----GA---T--A-TTT--GAAC-T--GA--------------C----------GCCTC-TTC--C--
gi|5 : cATCTACAG-TGAG-A-TTCG-T-----CG----A-GGC-TA-----CA---T--A-TTT--TGAC-T--GG-------------CC----------GCCTC-TTC--A--AA--TATC--------AGAA-C----CAAT-G-TAACA-C-AACCTTTATAGC-GGG-AAATTTTTG-CCTTCC--ATCTTC---GG-CCG--CTT-GTC-----TGCGATTA-AA--GG-TAAA--ACTGAATATCTTGCCCGCTCTCAAA-TCTCACACTTAGACATCCCTGCGA-TACTAACTCC-----CTA-T---C-CTGATAAAATTGCATTCT-TACTAA---AT-----TTAC-ATAG-TGT-TAGA--A-TTCC-C-ACA----TTTA----ATAG---GTTCGATTCA-T------ATTCAA--------A-CC------------TA-TTGCAAATGGCT--TCCGGA-AT--T---------TCATG-C-TCT--CTC-AAC-ACTGAA-GA-GTTCC-TA------ATAGTATATTTCA--TAA--------A---A-GTTT-G---T---ACT--AGCTTATTTAGTGGAGAAA---A-CTGT---------GTCTT-GAATG-T-A--CA---ACACT-TCTAAGCGTCCTCAACCTTCAAATGACAACC-ACTGC-TCACAAAGCA
gi|6 : taATCTACAG-TGAG-A-TTCG-T-----CG----A-GGC-TA-----CA---T--A-TTT--TGAC-T--GG-------------CC----------GCCTC-TTC--A--AA--TATC--------AGAA-C----CAAT-G-TAACA-C-AACCTTTATAGC-GGG-AAATTTTTG-CCTTCC--ATCTTC---GG-CCG--CTT-GTC-----TGCGATTA-AA--GG-TAAA--ACTGAATATCTTGCCCGCTCTCAAA-TCTCACACTTAGACATCCCTGCGA-TACTAACTCC-----CTA-T---C-CTGATAAAATTGCATTCT-TACTAA---AT-----TTAC-ATAG-TGT-TAGA--A-TTCC-C-ACA----TTTA----ATAG---GTTCGATTCA-T------ATTCAA--------A-CC------------TA-TTGCAAATGGCT--TCCGGA-AT--T---------TCATG-C-TCT--CTC-AAC-ACTGAA-GA-GTTCC-AATAGTATA----TT--------TCA--------TAAAA-GTTT-GTACT---ACT--AT
gi|7 : cactaa--T---ACT---TG---------------A---A-TTA----------GTCTT-GAA-G-T-ATACAG--AC-CTGTCTA-----TCTCTACTTTTAAATGAC-TTT-ACTCA-TCACAAAGCATT-T-CAAAATCAT--GAAAATC--A-ATTGACAAATAGAAAACT-ACGTAAATTTC-AACCAGTCTGACTCTGTCTGAGGACAGTTTT--AGAC-------------------ACTA----G----ATGGTA-CAAACTA-TCAATTTGGAACTC-TTCAGTGTTGAGAAA-GCAC---------AA-AAT-ATATTT-G--AAAT-A-CA--A-G-TTTT-ATAGTAATA--GGGAGTTAt
gi|7 : acaGAAATACAAGTT-TTA-TA-GT-AATA-GGGA--GTTAG--TAGGAT--G---TCT--AAG-ATG-AAAA--T-TAGAAGTGAGC-AAG-A----------AA-TT-CACTTT-AATTG--CAAC--------TGAAGTACAGGCAAGATTTCCCAAA-gtaggatgtctaagatgaaaattagaagtgagcaagaaattcactttaattgcaactgaagtacaggcaagatttcccaaaatcactatatgac
gi|8 : acatacttgaattagtcttgaagtatacagacctgtctatctctacttttaaatgactttactcatcacaaagcatttcaaaatcatgaaaatcaattgacaaatagaaaactacgtaaatttcaaccagtctgactctgtctgaggacagttttagacactagatggtacaaactatcaatttggaactcttcagtgttgagaaagcacaaaatatatttC-AC-CT--TAGA----CA-TCC-TACTAA---CTCCCTATCGCGATAA-AAC-TTGC--ATTTCT-T-ACC----TTTAC---ATAA-T-GTTAAATCCC-AC-----ATTCAATAGGGTCGA-TCA-TTTTCAAACTTA-TTGCAAATGGCT--TCCCGGAAT--T---------TCATG-C-TCT--CTC-AAC-ACTGAA-GA-GTTCC-AAT-----A----GTCTATTTCATAA--------T---A-GTAT-GTACT---ACT--ATT---------------T---A-GTAAGAAAACAGTGTCTG-AAT-G-T-A--CA---ACACTTTCTA-----AAGCGGCCTTCAAATGACAACC-ACTGC-TCACAAAGCACT-T-TAG---CAT--GAGATTTAAA-AACAATATAGAGAAAACT---GTCAAATTC-TAACAA------TCTATatcactatatgac
gi|9 : AACTA-TCAATTTGGAACTC-TTCAG------------CAC---------AA-AAT-G-ACGTTGA-AAATAA-CG--A-A-CTTG-ATTTAAATT--GG-ATTTAAC-ACT------ATGAAAA-G-GTA-AGAAATGCAA--T-TTACTG-GTGGACA-GGGA--GTTAGTTTAG-----GATGTCT--AAG-GTGAAAAA--T-TTGAAGCGGGC-AGA-ATGTTCAGTTTAA-GTGTATTTT--ATCG--TAACAG-GCGACGGAAGTTGAGGCAATTTTTCCCGAATTAAG--GATTGATGTGACA-TTGGTCCGAGAT--T---GGTAAAGGC-GAC-CAGTCCAAATATTTTA---GC--CTTT-C-CATC-TCAt
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): CAATATTCTATCGTAAAGTTGCACACATTTAAATTATGTATGTACATGGATAGTGTCTGCAAAAATGACAACCACAGCTCACAAAGCACTTCAGCATGAAATTTAAAAACAATA
Unaligned ( gi|29 ): GAAGGCACAAGTCTAAATATCCAGCCGAGCCAAAAAGAATCTCAACTGAGATTA
Unaligned ( gi|33 ): ATCTCGGTTGAGATTCTCTTTGGCTTGGCTGGATATTTGGACTTG
Unaligned ( gi|34 ): TCTAGGTTGAGATTCAGCTCGGCTGGATATTTGGACTGCCGC
Unaligned ( gi|35 ): CAGACCAAATATCCAGCCGAGCTGAATCTCAACCGAGATT
Unaligned ( gi|37 ): GTCCAAACATCCAGCTGAGCCGAATCTCCACCGAGATT
Unaligned ( gi|38 ): CCAAATATCCAGCCGAGCCGAATCTCAACCGAGATTA
Unaligned ( gi|39 ): AATCTCAGGTGAGATTCGGCTTGGCTGGATATTTGG
Alignments
lowQualScore : 22222222 11111111 1111111 1 1 1 11111 111 222222 333333333333 111 1111111 9999999999999999999999999 3333333333333 2222 1 11 888888888888888888888888888888888888888888888888888888888888888888888888888888888888 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 111 1 1 11111 11 1 11 111111 11 111111 1 666666666666 222222222 111 2222222 222222222 1 111 1 2222222 3333333333333333333333333 1111111111 11
lowQualScore : 4 6 4 2 6666666 55555 1 1 444444 333 22 1 44 1 22 3 2 2 1 11111111 66666666 7777777 5 0 888 0 1 1 5 5 4 1 5 99999 1 000 99 77 0 777777 6 777777777777 7 111 2 2 6 8888888 2222222222222222222222222 5 7777777777777 33 4 888 66 1 999 5555 1 777 8 4 22 111111111111111111111111111111111111111111111111111111111111111111111111111111111111 66 2 4 5 77 5 5 5 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 0 5 9999 777 0 0 22222 0 7 55 0 00 9999 0 77 6 6 3 6 999999 0 88 3 8 6 3 6 888888 4 6 5 1 6 555555555555 888888888 5 666 4 66 4 222 4 4 4 55 4 8888888 1 4 4 8 1 3 3 88 3 1 3 44 44 555555555 55 3 7 55 3 4 4 3 4 4 44 55 8888 4 55 3 3 555 6 4 4 4 0 1111111 33 0000000000000000000000000 3 0 3 888 44 3 3333333333 44 3 3
lowQualScore : . . . . ....... ..... . . ...... ... .. . .. . .. . . . . ........ ........ ....... . . ... . . . . . . . . ..... . ... .. .. . ...... . ............ . ... . . . ....... ......................... . ............. .. . ... .. . ... .... . ... . . .. .................................................................................... .. . . . .. . . . ................................................................................................ . . . .... ... . . ..... . . .. . .. .... . .. . . . . ...... . .. . . . . . ...... . . . . . ............ ......... . ... . .. . ... . . . .. . ....... . . . . . . . .. . . . .. .. ......... .. . . .. . . . . . . .. .. .... . .. . . ... . . . . . ....... .. ......................... . . . ... .. . .......... .. . .
lowQualScore : 2 0 0 0 5555555 00000 8 8 666666 222 55 7 11 9 88 0 5 9 4 33333333 11111111 1111111 7 7 666 7 4 4 7 7 0 4 7 44444 9 000 77 99 1 999999 7 000000000000 2 222 8 8 0 6666666 9999999999999999999999999 7 5555555555555 88 4 333 11 9 888 0000 0 888 2 4 22 111111111111111111111111111111111111111111111111111111111111111111111111111111111111 99 2 2 0 55 0 0 0 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 2 0 0000 666 0 8 55555 7 0 55 0 99 1111 3 99 7 7 2 7 222222 6 66 8 0 7 2 7 777777 2 7 7 4 7 999999999999 666666666 7 999 4 33 4 999 0 0 0 55 0 4444444 0 0 0 0 4 6 6 22 6 0 3 66 66 000000000 00 6 3 00 6 0 0 7 0 0 88 55 8888 2 77 6 2 333 0 0 0 0 4 8888888 77 6666666666666666666666666 1 4 1 555 22 1 2222222222 22 3 3
consensus : ATCT-CAG-T-G-AGAT-------TC-----GTCGA-GGC-TG-----AA---T--A-TTT--GGAC-T--GGTC-GCCTC-TAC--C--A--TCTC--------AGA--C----CAATG-TCACA-C-AACCTT-AT-TC-GGG-AAANTTT-G-CCT--C--AACTTC---CG-CCG--CCTGT------TGCGATTA-AAATGGCTNAA--ACTGAATATCTTGCCCGCTCTCAAA-TCTCACACTTAGACATCCCTGCGA-TACTAACTTCAAA---TT-T--CAC-CTTAGA-CATCC-TACTAAC---TCC-TATCACGATAA-AAC-TTGC--ATTTCT-T-ACC----TTTNC---ATAAGT-GTTAAA--TCCCAC-----A---TTTAA--------A-TCA-GGTTC--GGT-------------TA-TTTCANACG-GC----TTC---C---G--AT--TTCGTGCTCT-CTC-AAC-ACTGAA-GA-GTTCC-AA------A----AT--------TGA--------T---A-GTTT-GT--T---ACT--ATC---------------A---A-CTA----------GTCTT-AAGG-T-A--CAG--AC-CTGTCTA-----TCTCTACTTTTAAATGAC-TTT-ACTTN-TCACAAAGCATT-T-CAAAATCAT--GAAAAACAAA-ATTAACAAATAGAAAACT-ACGTAAATTTC-AAACAG------TCTATCTGAAAACATTTTT-AAAACCGTTC-TG-TACCTCAA-GACTAA-TCCATAGTA-CAAAC-TA-TCAATTTGGAACTC-TTCAG-----------GCAC---------AA-AAT-GNACGT-GA-AAATAA-CG--A-A-CTTG-ATTTAAATT--GGGATTTAAC-ACT-----TATGNAAA-G-GTA-AGAAATGCAAGTT-TTA-TN-GT-GATA-GGGA--GTTAG--TAGGAT--GATGTCT--AAG-GTG-AAAA--T-TTGAAGCGGGC-AAG-ATGTTCAGTTTAA-GT-CATTTT-AATCG--CAAC-AA-GCGGC-GAAGTTGAGGCAAGATTTCCCGAA-TNACN-TTG-TG-TGAC-A-TTGGTCTGAGA---T---GGTAAAGGC----------GA-------------C-CAGTCCAAATA-TTTA---GC--C-T---CG-----AC-CAT-C-TCACTGAGAA
Reference ( family-605 ) : ATCT-CAG-T-G-AGAT-------TC-----GTCGA-GGC-TA-----AA---T--A-TTT--GGAC-T--GGTC-GCCTT-TAC--C--A--TCTC--------AGA--C----CAATG-TCACA-C-AACCTT-AT-TC-GGG-AAATTTT-G-CCT--C--AACTTC---CG-CCG--CTTGT------TGCGATTA-AAATGGCTNAA--ACTGAATATCTTGCCCGCTCTCAAA-TCTCACACTTAGACATCCCTGCGA-TACTAACTTCAAA--TTT-T--CAC-CTTAGAACATCC-TACTAAC---TCC-TATCACGATAA-ANC-TTGC--ATTTCT-T-ACC----TTTNC---ATAAGT-GTTAAA--TCCCA------A---TTCAA--------A-TCA-AGTT---GGT-------------TA-TTTCANACG-GC----TTC---C---G--AT--TTCGTGCTCT-CTC-AAC-ACTGAA-GA-GTTCC-AA------A----AT--------TGA--------T---A-GTTT-GT--T---ACT--ATC---------------A---A-CTA----------GTCTT-AAGG-T-A--CAG--AC-CTGTCTA-----TCTCTACTTTTAAATGAC-TTT-ACTTN-TCACAAAGCATT-T-CAAAATCAT--GAAAAACAAA-ATTAACAAATAGAAAACT-ACGTAAATTTC-AAACAG------TCTATCTGAAAACATTTTT-AAAACCGTTC-TG-TACCTCAA-GACTAA-TCCGTAGTA-CAAAC-TA-TCAATTTGGAACTC-TTCAG-----------GCAC---------AA-AAT-GNACGT-GA-AAATAA-CG--A-A-CTTG-ATTTAAATT--GGGATTTAAC-ACT-----TATGNAAA-G-GTA-AGAAATGCAAGTT-TTA-TN-GT-GATA-GGGA--GTTAG--TAGGAT--GATGTCT--AAG-GTG-AAAA--T-TTGAAGCGGGC-AAG-ATGTTCAGTTTAA-GT-CATTTT-AATCG--CAAC-AA-GCGGCGGAAGTTGAGGCAAGNTTTCCCGAA-TAANG-TTG-TG-TGAC-A-TTGGTCTGAGA---T---GGTAAAGGC----------GA-------------C-CAGTCCAAATA-TTTA---GC--C-T---CG-----AC-NAT-C-TCACTGAGAA
gi|1 : ATCT-CAG-T-G-AGAT-------G------GTAGA-GGC-TA-----AA---T--A-TTT--GGAC-T--GGTC-GCCTT-TAC--C--A--TCTC--------AGA--C----CAATG-TAACA-C-AACCTT-AT-TC-GGG-AAAATTT-G-CCT--C--AACTTC---CG-TCG--CCTGT------TGCGATTA-AAATGGCTTAA--ACTGAACATCCTGTCGNNNNNNNNN-NNNNNNNNNNNNNNNNACGAACGGGTA-TAACTTCAAAAATTTAT--CACACTTGGAATATCCATACTAAC---TCC-TATCACAATAA-AAC-TTGC--ATTTCT---ACC----TTTCT---ATAAGT-GTTAAA--TCCCA------A---TTTAA--------A-TCA-AGTT---GGT-------------TA-TTTCACACG--------TC---C------AT--TTTGTGCT-T-CT--AAC-ACTGAA-GA-GTTCC-AA------A----AT--------TGA--------T---A-GCTT-GT--T---ACT--GTC---------------A---A-CTA----------GTCTT-AAGG-T-A--CAG--AC-CTGTTTA-----TCGTTACTTTTAAATGAC-TTT-ACTTG-TCACAAAGCATT-T-CAAAATCAT--GAAAAACAAA-ATTAACAAATAGAAAACT-ACGTAAATTTC-AAACAG------TCTATCTGAAAACATTTTT--AAACCGTTC-TG-TACCTCAA-GACTAA-TCCATAGTA-CAAAC-TA-TCAATTTGGAACTC-TTCA------------GCAC---------AA-AAT-GGACGT-GA-AAATAA-CG--A-A-CTTG-ATTTAAATT--GGGATTTAAC-ACTTATTCTATGAAAA-G-GTA-AGAAATGCAAGTT-TTA-TT-GT-GATC-GGGA--GTTAG--TAGGATCCGATGTCT--AAG-GTG-AAAA--T-TTGAAGCGGGC-AAG-ATGTTCAGTTTAG-GT-TATTTT-AATTG--CAAC-AG-GCGGCGGGAGTTGAGGTAAATTTTCCCGAA-TAAGG-TTG-TG-TTGC-A-TTGGTCTGAGA---T---GGTAAAGGC----------GA-------------C-CAGTCCAAATA-TTTA---GC--C-T---CT-----AC-CAT-C-TCACTGAGAA
gi|10 : AA-----------GCAC---------AA-ACT-ATATGT-GA-AAATAA-CC--A-A-CTTG-ATTTAATTT--GGGACTGAAC-ACT------ACATAAA-G-ATA-AGAAATGCAA-TT-TTA-TA-GT-GATA-AGGA--GTTAG--TAAGAT--G---TCT--AAG-GTG-AAAA--T-CTGAAGCAGGC-AAG-AAATTCAGTTTCA-GC-CATTTT-AATCG--CAAC-AA-GTGGCAGAAGTTGAGGCAAGATTTCCCAAA-TCACT-TTA-TG-TGAC-A-CTGGTCTGAGA---TTC-AG-AGAGGT----------GA-------------C-CAGTCCAAATA-ATGA---GC--C-T---TG-----TCGAAT-C-TCACTGAGAt
gi|11 : cttcagtgttgaga-GA-AAATAAACC--A-A-CTTG--TTTAAATTTTGGGATTTAAC-ACT------ATGCAAA-G-GTA-AGAAATGCAAGTTCTTA-TT-GC-GACA-TGGT--GTTAG--TAGGAT--GAT-TCT--AAG-GTG-TAAA--T-TTGAATC-GGC-AAGAATGTTCAGTTTAA-GC-CATTTTAAATCG--CAAC-AA-GCGGC-CAAGTTGAGGCAAATTTCACCGAA-TAA-G-TAGTTG-TGAC-ATTTGGTC-GAGAT--T---CGTAGAGAC----------GG-------------CTCAGTCCAAATA-TTTACTCGCTTC-T---CG-----ACGAAT-C-TCGCTGAAAA
gi|12 : -GA-AAATAA-CACTA-A-CTTG-ATTTA--CT--GTCATATAAC-ATG-----TATGTAAT-G-GTA-AGCCATGCAAGTT-CCA-TA-AT-GAAA-GGGA--TTTAA--CAAGGT--G---TCT--AA--GTC-AAAA--TGTTGAAGTGTGC-AAG-AAACTCAGACTAA-GC-CATTTA-AATTT--TAAC-AA-GTGGCCAAAGTTCAGACAAG-TTTCCCAAA-TCACT-TTGAGG-TGAC-A-TCGGTTTAAGA---TTCAGAT-GAGGC-----------A-------------T-CAACCCACAAA-TCCA---AT--C-T---TG-----ACAAAT-C-TCATCGAGA
gi|13 : CC-TATGATTATAA-ATC-TAGA--ATTTCT-T-ACC----TTTAC---AT-AGT-GTTAAA--TCCCA------AAAGT--AA--------A-TCA-AGAT---TGT-------------TATTTTCAAACA-------T------------AT--TCAATATTTT-CTC-AAC-ATTGAA-GA-GTTCCAAA------A----AT--------CTACTCCATATT---A-GTTT-G---T---ACT--ATC---------------C---A-TTG----------GCCTT-GAGG-T-A--CAA--AA-CTGTCTA-----caac
gi|14 : ATA-GTGA--GTTAG--TAG------ACGCTT--AAG-ATA-AAGA--T-TAGAAGCGGGC-AGA-AAATTCAGTTTAA-GT-CATGTT-AATCG--CAA----------------TCAGGCAAGATTTCCCGAA-TCACT-TTG-TG-CGAG-A-CTGGTCTGAGA---TTC-GG-AAGAGC----------GC-------------C-AAGACC-AATA-TTCAG--GC--C-T---CG-----AC-GAA-CTTCGCTGAgactaaggtaaatcaaagtccttaaagttctgaaacgag
gi|15 : taata-CGG-C-G-AGAT-------TC-----ATCGA-GGC-TGCCGCTAA---TTTA-TTT--GGAC-T--GGTC-ACCTC-TTC--C--AAATCTC--------AGA--CTGGTCAGTG-TCACA-C-AAAGTG-AT-TC-GGG-AAATCTT-G-CCT--G--AACTTC---TG-CCG--CTTGT------TGCGAgcaaaccgtcttctacaaatac
gi|15 : --A-A-CTTG-ATTTAATTT--GAGATTTAAC-AC------TATGTAAA-G-GTA-AGAAA----------TA-TA-GT-GATG-GGGG--GTTAG--TAGGAT--Gcatcctactaaccccccatcactatatttcttacctttacatagtgttaaatctcaaattaaatcaagtt
gi|16 : cggcgagattcatcgaggctgccgctaatttatttggactggtcacctcttccaaatctcagactggtcagtgtcacacaaagtgattcgggaaatcttgcctgaacttctgccgcttgttgcgaA-GCC-TA-----AA---T--A-TTTT-GGAC-TTTGATCCGCCTT-CAC--C--A--TCTC--------AGAACC----CAATGTTCACA-CAAACCGT-AT-TC-GGA-AA----T-G-CCT--TCAAACTTC---CG-TCGACCCCGTTTTGAGTGCGATTA-
gi|17 : agccattccacatcaggtgaaatcaaa-CATTTT-A-TCG--CAACAAA-GCGGC-GAAGTCGAGGCAAGA--TCCCGAA-TCACT-TTG-TG-TGACAA-CTGGTCGGAGATTTT---GGAAGAGACCT--------GA-------------C-CAGT-CAA--A-TTTA---GT--C-G---CG-----AC---T-C-TCTCGGAGA
gi|19 : ttagagTCT-CAG-T-G-AGAT-------TG-----GTAGA-GGC-TA-----AA---T--A-TTT--GGAC-T--GGTC-GCCTTCTAC--------TCT---------AGA--t
gi|19 : ATCT-CAG-T-G-AGAT-------TG-----GTAGA-GGC--A-----AA---T--A-TTT--GGAC-T--GGTC-GCCTT-aggcgaccagtccaaatatttgcctctaccaatctcactgagattaa
gi|2 : tctcagtgagattggtagaggctaaatatttggactggtcgccttctactctag-TACCTTAA-GACTAG-T---TGATT-CGAATATA-TCAATTTGGAACTCGTTCAGTGTTTGAGAAAGCACAAATCATTGAA-AAT-GCACGT-G--AAATAA-CC--A-A-CCTGAATTTAAA-T--GGGATTTAAC-ACT-----TATGAAAA-G-GTATAGAAATG-AAGGT-TTA-TT-GT-GATA-GGGGACGTTA---TAGGAT--G----CT--AAG-GTG-AAAT--T-TTGAAGCGGGC-AAG-ATGTTCAGTTTAATGT-TATTTT--ATCG--CAAC-AGCGCGACGGAAGTTGAGGCAAATTT--CCGAC-TAAGG-TTGTTG-TGA--A-TTGGTCTGAGA---T---GGTGAAGGCG---------GA-------------C-CAGTCCAAATA-TTTA---GC--C-T---TT-----AC-CAT-C-T-ACTGAGAtaa
gi|2 : aaCTTCAAA--ATT-T--CAC-CTTAG--CATCC-TA-TAACGTCCCC-TATCACAATAA-ACC-TT-C--ATTTCTAT-ACC----TTTTC---ATAAGT-GTTAAA--TCCC-------A---TTTAA--------ATTCA-GGTT---GGT-------------TA-TTTCACGTGCAT----TTT---C---A--ATGATTTGTGCTTT-CTCAAAC-ACTGAACGA-GTTCC--A------A----AT--------TGA--------T---ATATTC-G-------A----ATC---------------A---A-CTA----------GTCTT-AAGG-TAA--CA---AC-CTGT-TA-----T-TTTACTTTTAAGTGAC-CTT-ACTT--TCA-AAAGCATTAA-AAAAATCAT--GAAAAACAAATATTAAC-AATAGGAAACTAACGT-AATTTCAAAACAG------TCTATCTGAAAACAGTTTT-AAAACCGTTC-TG-TACCTCAACGACTAATTCCATAGTA-CAAAC-TATTCAAATTTGAACTC-TTCA------------GCACG--------AA-AAT-GGACGT-GA-AAATAA-CG--ATACCTTG-ATTTAAATT---GGATTTAAC-AC------TATGAAAA-A-GTA-AAAA--GCAAGTT-TTA-T--GT--ACA-GTGA--GTTAG--TAGGA------GTCT--AAG-GT--AAAA--T-TTGAATCGTGC-A---ATGTTCAGTTTAA-GT-T-CTTT-AATCGCCCAAC--A-GCGAC-GAAGTTGAGGCAA-ATTTCCCGAA-TAA-G-TTG--G-T-AC-A-TT--TCTGAGA---T----GTGAA-GC-----------A-------------C-CAGTCCAAATA-TTTA---GC--C-T---TT-----AC-CAT-C-TCACTGAGacaacctgttattttacttttaagtgaccttactttcaaaagcattaaaaaaatcatgaaaaacaaatattaacaataggaaactaacgtaatttcaaaacagtctatctgaaaacagttttaaaaccgttctgtacctcaacgactaattccatagtacaaactattcaaatttgaactcttcagcacgaaaatggacgtgaaaataacgataccttgatttaaattggatttaacactatgaaaaagtaaaaagcaagttttatgtacagtgagttagtaggagtctaaggtaaaatttgaatcgtgcaatgttcagtttaagttctttaatcgcccaacagcgacgaagttgaggcaaatttcccgaataagttggtacatttctgagatgtgaagcaccagtccaaatatttagcctttaccatctcactgagttt
gi|20 : aatctcagtagatggtaaaggctaaatatttggactggtccgccttcaccatctcagaccaattcacaacaaccttagtcggaaatttgcctcaacttccgtcgcgctgttgcgataaaataacattaaactgaacatcttgcccgAC-AA-ACGGCCACAATTCAGGCAAGATTTCCCAAA-TTACT-TTG-TGATG-C-A-TTGGTCCGAGATTCT---GAT-AAGGC----------AA---------------CAGTT--ACTA-TTCA---GC--C-T---CG-----Attt
gi|21 : tctTGAGA---T---GGTAAAGGCTAAATATTTGGACTGGTCGCCTTCAC-CAGTCCAAATA-TTTA---GC--C-TTTACGGCTTTAC-CAT-C-TCACTGAGAaata
gi|21 : taa---T---GGTGAAGGC----------GA-------------C-CAGTCCAAATA-TTTA---GC--C-T---TT-----AC-CAT-C-TCACTGAGActgagatta
gi|22 : taatctcagtgagatggtaaagccgtaaaggctaaatatttggacGGATTTAACGAGTC----TATGTAAAAG-GTATAGAAATGCAAGTT-TAA-TCAGC-GATAAGGGA--GTTAA--TAG------ATGTCT--AAG-ATGAAAAA--T-TTGtta
gi|23 : ATCT-CAG-C-C-AGAT-------TT-----GTCGA-GGC-TG-----GA---T--A-TTT--GAAC-T--GACC--CCTC-Taa
gi|24 : ctcagcaATCT-CAG-T-A-ACAT-------TT-----GTCAA-GGC-TA-----AA---T--A-TTT--GGAC-T--GGTT-GCATT-Ttaatgcacgactaacaagatgtaa
gi|25 : gcaaacgactgtatttggactgtcca---T---GGTGAAGGC----------GA-------------C-CAGTCC-AATA-TTTA---GC--CTT---TT-----AC-CATCC-TCACTGAGA
gi|26 : aATCT-CAG-T-G-AGAT-------TC-----GTCGA-GAC-TA-----AA---T--A-TTT--GGAC-T--GATT-GTCTC-TAA--TGAA--TCTC--------AGA--gatggatgaagcgacc
gi|27 : ctaATCT-CAT-T-G-AGAT-------TC-----ATCGA-GGC-TA-----AA---T--A-TTA--TGAC-T--GG
gi|28 : agtgtaATCT-CAG-T-G-AGATGGTAAAGCC-----GTAGAAGGCGTA-----AAATTT--A-TTT--GGAC-T--GGTC-atgcatcttca
gi|29 : ATCT-CAGTT-G-AGAT-------TCTTTTTGGCTC-GGC-TG-----GA---T--A-TTT--AGAC-T--TGT--GCCTT-ta
gi|3 : g-TTT--GGAC-T--GGTC-GCCTT-CACCAC--A--TCTCCGCAGGAGGGG--C----TGATG--CACACC-ACCCTT-CT-TC-GGGCCCACTTT-GCCCT--C----CCTCACTCG--TG--CCTGT------TG-GATTACCCATACCTTAACCCCTGAAAATCTTGCCCGCT-TCACATTTTCAC-CTTAGACAACTC--------CTAGCT-------------------------CACCC-TAC------------ATCA--ATAC-ACCGTTGCAAATTTCT-TAACC----TTTTCCAAAT-AGTGGTTCAC--TCCCACCACACA---TT--A--------C-TCACGGTT---GTT-------------TA-TTTT-CACG-TCCATTTTCACAT---G--AT--T--GTGCTTT-CC---AC-ACTGGG-AACGTTAC--A------A----AT--------TGA--------T---A-GTTTGGG--TAAAACTAAATC---------------AATCA-CTA----------GTCTTAAAAG-T----CAGAAAC-CTGT-TA-----TCTCTACTTT--AGTGAC--TT-ACTTG-TCACAAAGCATT-T--AAAACTA---GAAAAACAAC-ATTAACAAATAGGAAACT-ACGTAAATTTC-AAATAG------TCTATCTGAAAACATTTTT-AA---CGTTC-TG-TACCTC-A-GACTAT-TCTGT--CA-CAAAC-TAGTC-ATTTGGAA--C-ATCA------------GCAC---------AATAATCGGACGT-GAGAAATAA-C-----A-C-TG-ATTTAAATT--GGGATTTTCT-GTTAA---TAAGCAAA-GAGTA-AGAAATGCAAGTT-TTA-TT-GT-GA-A-GGGA--GTTAG--TAGGAT--G-TGTACGGAAGAGTG-AACACTC-TTGAAGCGGGCGAAG-ATGTT-AGTTTCA-Gta
gi|30 : C-TATCACGATAA-AAC-TTGC--ATTTCT-T-ACCTAAATTTAC---AT-AGT-GTTAAA--TCCg
gi|31 : TACTTT-AAATGAC-TTTCACTTA-TCACAAAGCATT-T-CAAAAACGT--GAAAA
gi|32 : ATCT-CAGCT-G-AGAT-------TC-----ATTGA-GGA-TG-----AA---T--A-TTT--GGAC-T--GA-C-GCCT
gi|34 : t-T-G-AGAT-------TC-----AGCTC-GGC-TG-----GA---T--A-TTT--GGAC-T--G
gi|35 : tctaggtATCT-CGG-TTG-AGAT-------TC-----AGCTC-GGC-TG-----GA---T--A-TTT--GGTC-T--Gccgc
gi|36 : TCT-CAG-T-G-AGAT-------TC-----GTCGA-GGC-T------AA---T--ATTTT--GGAC-T--GGt
gi|37 : ATCT-CGG-T-GGAGAT-------TC-----GGCTC-AGC-TG-----GA---T--G-TTT--GGAC-c
gi|38 : ATCT-CGG-TTG-AGAT-------TC-----GGCTC-GGC-TG-----GA---T--A-TTT--GGt
gi|39 : ATCT-CAGGT-G-AGAT-------TC-----GGCTT-GGC-TG-----GA---T--A-TTT--GGta
gi|4 : aATCT-CAT-G-G-AGAT-------G------GTAAA-AGC-TA-----AA---T--A-TTTTTGGACCT--GG-C-GCTTT-TAC--C--A--TCTC--------AAA--C----CAATG-TCACA----AC-TT-AT-TCCGGG-AAAATTT-C-CCT--C--AACTTC---CGGTCG--CT-GT------TGCGATTA-AAA--------------AATAACTT----------AAA-------ACT--GACATCTTTGC-----C--GCTTCAAA--TTT-TTCCAC-CTTAGA-CATCC-TACTAAC---TCCCTGTCACAATAAGAAT-TTGC--ATTTCT-TTACC----TTTTC---ATA-GT-GTTAAA--TCCAA------T---TTTAA--------A-TCA-AGTT---CGT-------------TA-TTTT-CACG-TCCA--TTCAA-T---G--AT--TTTGTGCTTTTCTC-AACCACTGAA-GA-GTTTC-CA------A----AT--------TGA--------T---A-GTTT-TG--T---ACT--ATC---------------A---AACTA----------GTCTT-AAGGAT-A--CAG--GC--TGT-TA-----TCTTTACTTTTCAATGAC-TTTTACTTTGTCACAAAGCATT-TTCAAAATCATTTGAAAAACAAA-ATTAACAAATAGAAAACT-ACGTAAATTTC-AAACAG------TCTATCTGAAAACATTTTTAAAAACCGTTCATGTTACCTCAA-GACTAA-TACATAGTACCAAAC-TA-TCAA
gi|40 : aCGA-GGC-TG-----GA---T--A-TTT--GAAC-T--GA-C-GCCTC-TTC--C--
gi|5 : cATCTACAG-T-G-AGAT-------TC-----GTCGA-GGC-TA-----CA---T--A-TTT--TGAC-T--GGCC-GCCTC-TTC--A--AA-TATC--------AGAA-C----CAATG-TAACA-C-AACCTTTATAGC-GGG-AAATTTTTG-CCTTCC--ATCTTC---GG-CCG--CTTGTC-----TGCGATTA-AA--GG-TAAA--ACTGAATATCTTGCCCGCTCTCAAA-TCTCACACTTAGACATCCCTGCGA-TACTAACTC---------------C-CT------ATCC-T-------------------GATAA-AA--TTGC--A-TTCT-T-ACTAAA-TTTAC---AT-AGT-GTTAGAATTCCCAC-----A---TTTAA-----------TA-GGTTC--GATTCATATTCAAACCTA-TTGCAAATG-GC----TTC---C---GGAAT--TTCATGCTCT-CTC-AAC-ACTGAA-GA-GTTCC-TA------ATAGTATATTTCA--TAA--------A---A-GTTT-G---T---ACT--AGCTTATTTAGTGGAGAAA---A-CTGT---------GTCTTGAATG-T-A--CA---ACACT-TCTAAGCGTCCTCAACCTTCAAATGACAACC-ACTGC-TCACAAAGCA
gi|6 : taATCTACAG-T-G-AGAT-------TC-----GTCGA-GGC-TA-----CA---T--A-TTT--TGAC-T--GGCC-GCCTC-TTC--A--AA-TATC--------AGAA-C----CAATG-TAACA-C-AACCTTTATAGC-GGG-AAATTTTTG-CCTTCC--ATCTTC---GG-CCG--CTTGTC-----TGCGATTA-AA--GG-TAAA--ACTGAATATCTTGCCCGCTCTCAAA-TCTCACACTTAGACATCCCTGCGA-TACTAACTC---------------C-CT------ATCC-T-------------------GATAA-AA--TTGC--A-TTCT-T-ACTAAA-TTTAC---AT-AGT-GTTAGAATTCCCAC-----A---TTTAA-----------TA-GGTTC--GATTCATATTCAAACCTA-TTGCAAATG-GC----TTC---C---GGAAT--TTCATGCTCT-CTC-AAC-ACTGAA-GA-GTTCC-AATAGTATA----TT--------TCA--------TAAAA-GTTT-GTACT---ACT--AT
gi|7 : cactaa--T---ACT---TG---------------A---A-TTA----------GTCTT-GAAG-T-ATACAG--AC-CTGTCTA-----TCTCTACTTTTAAATGAC-TTT-ACTCA-TCACAAAGCATT-T-CAAAATCAT--GAAAATC--A-ATTGACAAATAGAAAACT-ACGTAAATTTC-AACCAGTCTGACTCTGTCTGAGGACAGTTTT--AGAC-------------------ACTAG----ATGGTA-CAAAC-TA-TCAATTTGGAACTC-TTCAGTGTTGAGAAA-GCAC---------AA-AAT-ATATTT-G--AAAT-A-CA--A-G-TTTT-ATAGTAATA--GGGAGTTAt
gi|7 : acaGAAATACAAGTT-TTA-TA-GT-AATA-GGGA--GTTAG--TAGGAT--G---TCT--AAG-ATG-AAAA--T-TAGAAGTGAGC-AAG-A----------AA-TT-CACTTT-AATTG--CAAC---------TGAAGTACAGGCAAGATTTCCCAAA-gtaggatgtctaagatgaaaattagaagtgagcaagaaattcactttaattgcaactgaagtacaggcaagatttcccaaaatcactatatgac
gi|8 : acatacttgaattagtcttgaagtatacagacctgtctatctctacttttaaatgactttactcatcacaaagcatttcaaaatcatgaaaatcaattgacaaatagaaaactacgtaaatttcaaccagtctgactctgtctgaggacagttttagacactagatggtacaaactatcaatttggaactcttcagtgttgagaaagcacaaaatatattt--CAC-CTTAGA-CATCC-TACTAAC---TCCCTATCGCGATAA-AAC-TTGC--ATTTCT-T-ACC----TTTAC---ATAA-T-GTTAAA--TCCCAC-----A---TTCAATAGGGTCGA-TCA-TTTTCAAACT-------------TA-TTGCAAATG-GC----TTC---CCGGA--AT--TTCATGCTCT-CTC-AAC-ACTGAA-GA-GTTCC-AAT-----A----GTCTATTTCATAA--------T---A-GTAT-GTACT---ACT--ATT---------------T---A-GTAAGAAAACAGTGTCTG-AATG-T-A--CA---ACACTTTCTA-----AAGCGGCCTTCAAATGACAACC-ACTGC-TCACAAAGCACT-T-TAG---CAT--GAGATTTAAA-AACAATATAGAGAAAACT---GTCAAATTC-TAACAA------TCTATatcactatatgac
gi|9 : AAC-TA-TCAATTTGGAACTC-TTCAG------------CAC---------AA-AAT-G-ACGTTGA-AAATAA-CG--A-A-CTTG-ATTTAAATT--GG-ATTTAAC-ACT------ATGAAAA-G-GTA-AGAAATGCAA--T-TTACTG-GTGGACA-GGGA--GTTAGTTTAG-----GATGTCT--AAG-GTGAAAAA--T-TTGAAGCGGGC-AGA-ATGTTCAGTTTAA-GTGTATTTT--ATCG--TAAC-AG-GCGACGGAAGTTGAGGCAATTTTTCCCGAATTAAGGATTGATG-TGAC-A-TTGGTCCGAGAT--T---GGTAAAGGC----------GA-------------C-CAGTCCAAATATTTTA---GC--C-T---TT------C-CAT-C-TCAt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): CAATATTCTATCGTAAAGTTGCACACATTTAAATTATGTATGTACATGGATAGTGTCTGCAAAAATGACAACCACAGCTCACAAAGCACTTCAGCATGAAATTTAAAAACAATA
Unaligned ( gi|33 ): ATCTCGGTTGAGATTCTCTTTGGCTTGGCTGGATATTTGGACTTG
Alignments
lowQualScore : 111111 11 11111111 1111111 1 1 1 11111 222222 333333 999999999999999999999999999999999999999999999999999999999999999999 111 2222 11 11 111111 3333333333 7777777777777777777 44444444444444444444 11 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 1111 111 1 1 11111 11 1 11 111111 11 111 1 1111111 44444444444 111 1111 111 3333333 222222222 1 1111 1 2222222 2222222222222222222222222 111 222222222222222 111
lowQualScore : 4 6 6 2 000000 0 44444 22 1 44 1 22 77 2 2 0 77777 55 66666666 5555555 5 5 666 0 0 5 5 2 0 5 55555 0 888 99 66 77 444444 5 222222 3 99 0 7 0 888 9 0 0 666666666666666666666666666666666666666666666666666666666666666666 4 77 66 1 222 9999 2 777 77 8 22 111111 0 4444444444 5 3333333333333333333 1 66 55555555555555555555 77 0 4 5 00 5 5 5 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 1 5 1111 999 1 0 3 44444 0 7 55 0 00 9999 0 77 6 6 3 6 999999 0 88 4 2 6 6 3 6 9999 1 6 000 1 0 8888888 66666666666 77 5 5 000 666 2222 4 4 4 111 4 4 55 55 4444444 1 4 2 4 4 4 4 1 55 000000000 66 4 44 66 4 4 4 5 4 4 66 666 4 2 4 55 4 4 1 5555 2 4 4 4 0 5555555 555 4444444444444444444444444 2 777 000 33 222222222222222 000 3 3
lowQualScore : . . . . ...... . ..... .. . .. . .. .. . . . ..... .. ........ ....... . . ... . . . . . . . ..... . ... .. .. .. ...... . ...... . .. . . . ... . . . .................................................................. . .. .. . ... .... . ... .. . .. ...... . .......... . ................... . .. .................... .. . . . .. . . . ....................................................................................... . . . .... ... . . . ..... . . .. . .. .... . .. . . . . ...... . .. . . . . . . .... . . ... . . ....... ........... .. . . ... ... .... . . . ... . . .. .. ....... . . . . . . . . .. ......... .. . .. .. . . . . . . .. ... . . . .. . . . .... . . . . . ....... ... ......................... . ... ... .. ............... ... . .
lowQualScore : 2 0 0 0 333333 6 55555 55 7 11 9 88 11 5 7 5 66666 00 11111111 6666666 0 0 222 0 0 0 0 8 0 0 88888 5 888 22 99 22 444444 7 555555 3 22 3 0 2 888 0 8 8 777777777777777777777777777777777777777777777777777777777777777777 4 33 11 9 444 4444 6 888 22 9 22 888888 1 9999999999 7 0000000000000000000 3 00 77777777777777777777 99 4 0 7 00 7 7 7 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 4 7 7 6666 333 4 7 7 33333 7 0 55 0 99 1111 3 99 7 7 2 7 222222 6 66 2 5 7 7 2 7 3333 7 7 000 4 1 6666666 77777777777 99 7 7 000 999 1111 4 4 4 999 0 0 22 55 6666666 0 4 5 0 0 9 0 9 55 111111111 11 4 66 11 4 4 4 1 4 4 11 000 0 0 0 22 0 0 0 4444 0 0 0 4 4 5555555 666 2222222222222222222222222 9 999 777 99 444444444444444 888 1 1
consensus : ATCT-CAG-T-G-AGATTC-----GTCGAGGCTG-----GAT--A-TTT--GGAC-T--GGT-C-GCC-TCTAC--C--A--TCTC--------AGA--C----CAATG-TCAC-A-C-AACCTT-AT-TC-GGG-AAANTTT-G-CCT--C--AACTTC---CG-CCG--C-CTGT------TGCGATTA-AAATGGC-TTAA--ACTGAATATCTTGCCCGCTCTCAAA-TCTCACACTTAGACATCCCTGCGA-TACTAACTTCAAA---TT-T---CAC-CTTAGA-CATCC-TACTAACTCC--TATCGC-GATAA-AAC-TTGC--ATTTCT-T-ACC----TTTAC---ATA-AGT-GTTAAA--TCC-----CACATTTAA--------A-TCA-GGTTCGA--T-------------TATTTCACACG-GC----TTC---C---G--AT--TTCGTGCTCT-CTC-AAC-ACTGAA-GA-GTTCCAA------A----AT--------TGAT---A-GTTT-GT--T---ACT--ATC---------------A---A-CTA----------GTCTT-AAGG-T-A--CAG--AC-CTGTCTA-----TCTCTACTTTTAAATGAC-TTT-ACTTN-TCACAAAGCATT-T-CAAAATCAT--GAAAAACAAA-ATTAACAAATAGAAAACT-ACGTAAATTTC-AAACAG------TCTATCTGAAAACATTTTT-AAAACCGTTC-TG-TACCTCAA-GACTAA-TCCATAGTA-CAAAC---TA-TCAA-------TTTGGAACTCTTCAG----------GC--AC-AA-AA---T-GGACG----T-GA-AAATAA-CG--A-A-CTTGATTTAA-ATT--GGGATTTAACACT-----TATGNAAAG-GTAAGAAATGCAAGTT-TTA-TAGT-GATAGGGAGTTAG--TAGGAT--GATGTCT--AAG-GTG-AAAA--T-TTGAAGCGGGC-AAG-ATGTTCAGTTTAAGT-CATTTT-AATCG--CAACAA-GCGG-C-GA-AGTTGAGGCAAGATTTC-CC-GAATCA--CTTTG-TG-TGAC-A-TTGGTCTGAGA---T---GGTA-AAGGC----------GA-------------C-CAGTCCAAATA---TTTA---GC--C---T----CG-----AC-C-AT-C-TCACTGAGAA
Reference ( family-605 ) : ATCT-CAG-T-G-AGATTC-----GTCGAGGCTG-----AAT--A-TTT--GGAC-T--GGT-C-GCC-TCTAC--C--A--TCTC--------AGA--C----CAATG-TCAC-A-C-AACCTT-AT-TC-GGG-AAANTTT-G-CCT--C--AACTTC---CG-CCG--C-CTGT------TGCGATTA-AAATGGC-TNAA--ACTGAATATCTTGCCCGCTCTCAAA-TCTCACACTTAGACATCCCTGCGA-TACTAACTTCAAA---TT-T---CAC-CTTAGA-CATCC-TACTAACTCC--TATCAC-GATAA-AAC-TTGC--ATTTCT-T-ACC----TTTNC---ATA-AGT-GTTAAA--TCC-----CACATTTAA--------A-TCA-GGTTCGG--T-------------TATTTCANACG-GC----TTC---C---G--AT--TTCGTGCTCT-CTC-AAC-ACTGAA-GA-GTTCCAA------A----AT--------TGAT---A-GTTT-GT--T---ACT--ATC---------------A---A-CTA----------GTCTT-AAGG-T-A--CAG--AC-CTGTCTA-----TCTCTACTTTTAAATGAC-TTT-ACTTN-TCACAAAGCATT-T-CAAAATCAT--GAAAAACAAA-ATTAACAAATAGAAAACT-ACGTAAATTTC-AAACAG------TCTATCTGAAAACATTTTT-AAAACCGTTC-TG-TACCTCAA-GACTAA-TCCATAGTA-CAAAC---TA-TCAA-------TTTGGAACTCTTCAG----------GC--AC-AA-AA---T-GNACG----T-GA-AAATAA-CG--A-A-CTTGATTTAA-ATT--GGGATTTAACACT-----TATGNAAAG-GTAAGAAATGCAAGTT-TTA-TNGT-GATAGGGAGTTAG--TAGGAT--GATGTCT--AAG-GTG-AAAA--T-TTGAAGCGGGC-AAG-ATGTTCAGTTTAAGT-CATTTT-AATCG--CAACAA-GCGG-C-GA-AGTTGAGGCAAGATTTC-CC-GAATNA--CNTTG-TG-TGAC-A-TTGGTCTGAGA---T---GGTA-AAGGC----------GA-------------C-CAGTCCAAATA---TTTA---GC--C---T----CG-----AC-C-AT-C-TCACTGAGAA
gi|1 : ATCT-CAG-T-G-AGATG------GTAGAGGCTA-----AAT--A-TTT--GGAC-T--GGT-C-GCC-TTTAC--C--A--TCTC--------AGA--C----CAATG-TAAC-A-C-AACCTT-AT-TC-GGG-AAAATTT-G-CCT--C--AACTTC---CG-TCG--C-CTGT------TGCGATTA-AAATGGC-TTAA--ACTGAACATCCTGTCGNNNNNNNNN-NNNNNNNNNNNNNNNNACGAACGGGTA-TAACTTCAAAAATTTAT---CACACTTGGAATATCCATACTAACTCC--TATCAC-AATAA-AAC-TTGC--ATTTCT---ACC----TTTCT---ATA-AGT-GTTAAA--TCC-----CA-ATTTAA--------A-TCA-AGTT-GG--T-------------TATTTCACACG--------TC---C------AT--TTTGTGCT-T-CT--AAC-ACTGAA-GA-GTTCCAA------A----AT--------TGAT---A-GCTT-GT--T---ACT--GTC---------------A---A-CTA----------GTCTT-AAGG-T-A--CAG--AC-CTGTTTA-----TCGTTACTTTTAAATGAC-TTT-ACTTG-TCACAAAGCATT-T-CAAAATCAT--GAAAAACAAA-ATTAACAAATAGAAAACT-ACGTAAATTTC-AAACAG------TCTATCTGAAAACATTTTT--AAACCGTTC-TG-TACCTCAA-GACTAA-TCCATAGTA-CAAAC---TA-TCAA-------TTTGGAACTCTTCA-----------GC--AC-AA-AA---T-GGACG----T-GA-AAATAA-CG--A-A-CTTGATTTAA-ATT--GGGATTTAACACTTATTCTATGAAAAG-GTAAGAAATGCAAGTT-TTA-TTGT-GATCGGGAGTTAG--TAGGATCCGATGTCT--AAG-GTG-AAAA--T-TTGAAGCGGGC-AAG-ATGTTCAGTTTAGGT-TATTTT-AATTG--CAACAG-GCGG-CGGG-AGTTGAGGTAAATTTTC-CC-GAATAA--GGTTG-TG-TTGC-A-TTGGTCTGAGA---T---GGTA-AAGGC----------GA-------------C-CAGTCCAAATA---TTTA---GC--C---T----CT-----AC-C-AT-C-TCACTGAGAA
gi|10 : AA----------GC--AC-AA-AC---T-ATATG----T-GA-AAATAA-CC--A-A-CTTGATTTAA-TTT--GGGACTGAACACT------ACATAAAG-ATAAGAAATGCAA-TT-TTA-TAGT-GATAAGGAGTTAG--TAAGAT--G---TCT--AAG-GTG-AAAA--T-CTGAAGCAGGC-AAG-AAATTCAGTTTCAGC-CATTTT-AATCG--CAACAA-GTGG-CAGA-AGTTGAGGCAAGATTTC-CC-AAATCA--CTTTA-TG-TGAC-A-CTGGTCTGAGA---TTC-AG-A-GAGGT----------GA-------------C-CAGTCCAAATA---ATGA---GC--CTTGT----CG-----A----AT-C-TCACTGAGAt
gi|11 : cttcagtgttgaga-GA-AAATAAACC--A-A-CTTG-TTTAA-ATTTTGGGATTTAACACT------ATGCAAAG-GTAAGAAATGCAAGTTCTTA-TTGC-GACATGGTGTTAG--TAGGAT--GAT-TCT--AAG-GTG-TAAA--T-TTGAATC-GGC-AAGAATGTTCAGTTTAAGC-CATTTTAAATCG--CAACAA-GCGG-C-CA-AGTTGAGGCAA-ATTTCACC-GAATAA---GTAGTTG-TGAC-ATTTGGTC-GAGAT--T---CGTA-GAGAC----------GG-------------CTCAGTCCAAATA---TTTACTCGCTTC---T----CG-----ACGA-AT-C-TCGCTGAAAA
gi|12 : -GA-AAATAA-CACTA-A-CTTGATTTA---CT--GTCATATAACATG-----TATGTAATG-GTAAGCCATGCAAGTT-CCA-TAAT-GAAAGGGATTTAA--CAAGGT--G---TCT--AA--GTC-AAAA--TGTTGAAGTGTGC-AAG-AAACTCAGACTAAGC-CATTTA-AATTT--TAACAA-GTGGCC-AA-AGTTCAGACAAG-TTTC-CC-AAATCA--CTTTGAGG-TGAC-A-TCGGTTTAAGA---TTCAGAT--GAGGC-----------A-------------T-CAACCCACAAA---TCCA---AT--C---T----TG-----ACAA-AT-C-TCATCGAGA
gi|13 : AGACAGTTT-TG-TACCTCAA-GGCCAA-TGGATAGTA-CAAACTAATA-TGGAGTAGATTTTTGGAACTCTTCAAT---------GTTGAG-AA-AATATT-GAATATGTTT-GA-AAATAA-CA--A-T-CTTGATTTACTTTT--GGGATTTAACAC------TATGTAAAG-GTAAGAAATTCTAGAT-TTA-TAAT-CATAGGGAcaac
gi|14 : tATAGTGAGTTAG--TAG------ACGCTT--AAG-ATA-AAGA--T-TAGAAGCGGGC-AGA-AAATTCAGTTTAAGT-CATGTT-AATCG--CAA-----------------TCAGGCAAGATTTC-CC-GAATCA--CTTTG-TG-CGAG-A-CTGGTCTGAGA---TTC-GG-A-AGAGC----------GC-------------C-AAGACC-AATA---TTCAG--GC--C---T----CG-----AC-G-AA-CTTCGCTGActaaggtaaatcaaagtccttaaagttctgaaacgag
gi|15 : taata-CGG-C-G-AGATTC-----ATCGAGGCTGCCGCTAATTTA-TTT--GGAC-T--GGT-C-ACC-TCTTC--C--AAATCTC--------AGA--CTGGTCAGTG-TCAC-A-C-AAAGTG-AT-TC-GGG-AAATCTT-G-CCT--G--AACTTC---TG-CCG--C-TTGT------TGCGAgcaaaccgtcttctacaaatac
gi|15 : --A-A-CTTGATTTAA-TTT--GAGATTTAACAC------TATGTAAAG-GTAAGAAA----------TA-TAGT-GATGGGGGGTTAG--TAGGAT--Gcatcctactaaccccccatcactatatttcttacctttacatagtgttaaatctcaaattaaatcaagtt
gi|16 : cggcgagattcatcgaggctgccgctaatttatttggactggtcacctcttccaaatctcagactggtcagtgtcacacaaagtgattcgggaaatcttgcctgaacttctgccgcttgttgcgaAGCCTA-----AAT--A-TTTT-GGAC-TTTGAT-CCGCC-TTCAC--C--A--TCTC--------AGAACC----CAATGTTCAC-A-CAAACCGT-AT-TC-GGA-AA----T-G-CCT--TCAAACTTC---CG-TCGACC-CCGTTTTGAGTGCGATTA-
gi|17 : agccattccacatcaggtgaaatcaaa-CATTTT-A-TCG--CAACAAAGCGG-C-GA-AGTCGAGGCAAGAT--C-CC-GAATCA--CTTTG-TG-TGACAA-CTGGTCGGAGATTTT---GGAA-GAGACCT--------GA-------------C-CAGT-CAA--A---TTTA---GT--C---G----CG-----AC----T-C-TCTCGGAGA
gi|19 : ttagagTCT-AGA--------GTAGAAGGC----------GA-------------C-CAGTCCAAATA---TTTA---GC--C---T----CT-----AC-CAAT-C-TCACTGAGAt
gi|19 : ATCT-CAG-T-G-AGATTG-----GTAGAGGC-A-----AAT--A-TTT--GGAC-T--GGT-C-GCCTTCTAaggcgaccagtccaaatatttgcctctaccaatctcactgagattaa
gi|2 : tctcagtgagattggtagaggctaaatatttggactggtcgccttctactcATCT-CAG-T---AGATG------GTAAAGGCTA-----AAT--A-TTT--GGAC-T--GGTCC-GCC-TTCAC--C--A--TCTC--------AGA--C----CAAT--TCACAA-C-AACCTT-AG-TC-GG---AAATTT-G-CCT--C--AACTTC---CG-TCG--CGCTGT------TGCGA-TA-AAATAACATTAA--ACTGAACATCTTGCCCGCTTCAAAA-TTTCAC-CTTAG-CATCC-------TA-TAACGTCCCC---TA-T---CAC-AATAAA-CCTTC------ATTTC--TAT-----------AC-CT-----TTTC-------------------ATA-AGT-GTTAAA--TCC-------CATTTAA--------ATTCA-GGTT-GG--T-------------TATTTCACGTGCAT----TTT---C---A--ATGATTTGTGCTTT-CTCAAAC-ACTGAACGA-GTTCC-A------A----AT--------TGAT---ATATTC-G-------A----ATC---------------A---A-CTA----------GTCTT-AAGG-TAA--CA---AC-CTGT-TA-----T-TTTACTTTTAAGTGAC-CTT-ACTT--TCA-AAAGCATTAA-AAAAATCAT--GAAAAACAAATATTAAC-AATAGGAAACTAACGT-AATTTCAAAACAG------TCTATCTGAAAACAGTTTT-AAAACCGTTC-TG-TACCTCAACGACTAATTCCATAGTA-CAAAC---TATTCAA-------ATTTGAACTCTTCA-----------GC--ACGAA-AA---T-GGACG----T-GA-AAATAA-CG--ATACCTTGATTTAA-ATT---GGATTTAACAC------TATGAAAAA-GTAAAAA--GCAAGTT-TTA-T-GT--ACAGTGAGTTAG--TAGGA------GTCT--AAG-GT--AAAA--T-TTGAATCGTGC-A---ATGTTCAGTTTAAGT-T-CTTT-AATCGCCCAAC-A-GCGA-C-GA-AGTTGAGGCAA-ATTTC-CC-GAATAA---GTTG--G-T-AC-A-TT--TCTGAGA---T----GTG-AA-GC-----------A-------------C-CAGTCCAAATA---TTTA---GC--C---T----TT-----AC-C-AT-C-TCACTGAGtaa
gi|20 : aACAA-ACGG-C-CACAATTCAGGCAAGATTTC-CC-AAATTA--CTTTG-TGATG-C-A-TTGGTCCGAGATTCT---GAT--AAGGC----------AA---------------CAGTT--ACTA---TTCA---GC--C---T----CG-----Attt
gi|21 : tctTGAGA---T---GGTA-AAGGCTAAATATTTGGACTGGTCGCCTTCAC-CAGTCCAAATA---TTTA---GC--C---TTTA-CGGCTTTAC-C-AT-C-TCACTGAGAaata
gi|21 : taa---T---GGTG-AAGGC----------GA-------------C-CAGTCCAAATA---TTTA---GC--C---T----TT-----AC-C-AT-C-TCACTGAGActgagatta
gi|22 : taatctcagtgagatggtaaagccgtaaaggctaaatatttggacCAAA---TT-TTT-CAT-CTTAGA-CATC--TATTAACTCCCTTATCGCTGATTA-AAC-TTGC--ATTTCTAT-ACCT---TTTAC---ATAGACTCGTTAAA--TCC-----tta
gi|23 : ATCT-CAG-C-C-AGATTT-----GTCGAGGCTG-----GAT--A-TTT--GAAC-T--GAC-C--CC-TCTaa
gi|24 : ctcagcaATCT-CAG-T-A-ACATTT-----GTCAAGGCTA-----AAT--A-TTT--GGAC-T--GGT-T-GCtaatgcacgactaacaagatgtaa
gi|25 : gcaaacgactgtatttggactgtccaaaat---T---GGTG-AAGGC----------GA-------------C-CAGTCC-AATA---TTTA---GC--CT--T----TT-----AC-C-ATCC-TCACTGAGA
gi|26 : aATCT-CAG-T-G-AGATTC-----GTCGAGACTA-----AAT--A-TTT--GGAC-T--GAT-T-GTC-TCTAA--TGAA--TCTC--------AGA--gatggatgaagcgacc
gi|27 : ctaATCT-CAT-T-G-AGATTC-----ATCGAGGCTA-----AAT--A-TTA--TGAC-T--GGA-T-GCA-TCT
gi|28 : agtgta----------GA-------------C-CAGTCCAAATAAATTTTAC--GC--C---TTCTACGGCTTTAC-C-AT-C-TCACTGAGAtca
gi|29 : ATCT-CAGTT-G-AGATTCTTTTTGGCTCGGCTG-----GAT--A-TTT--AGAC-T--TGT---GCC-Ttta
gi|3 : ga-TTT--GGAC-T--GGT-C-GCC-TTCACCAC--A--TCTCCGCAGGAGGGG--C----TGATG--CAC-ACC-ACCCTT-CT-TC-GGGCCCACTTT-GCCCT--C----CCTCACTCG--TG--C-CTGT------TG-GATTACCCATACC-TTAACCCCTGAAAATCTTGCCCGCT-TCACATTTTCAC-CTTAGACAACTC--------CTAGCT--------------------------CACCC-TAC----------ATCA---ATAC-ACCGTTGCAAATTTCT-TAACC----TTTTCCAAAT--AGTGGTTCAC--TCCCACCACACATT--A--------C-TCACGGTT-GT--T-------------TATTTT-CACG-TCCATTTTCACAT---G--AT--T--GTGCTTT-CC---AC-ACTGGG-AACGTTAC-A------A----AT--------TGAT---A-GTTTGGG--TAAAACTAAATC---------------AATCA-CTA----------GTCTTAAAAG-T----CAGAAAC-CTGT-TA-----TCTCTACTTT--AGTGAC--TT-ACTTG-TCACAAAGCATT-T--AAAACTA---GAAAAACAAC-ATTAACAAATAGGAAACT-ACGTAAATTTC-AAATAG------TCTATCTGAAAACATTTTT-AA---CGTTC-TG-TACCTC-A-GACTAT-TCTGT--CA-CAAAC---TAGTC-A-------TTTGGAA--CATCA-----------GC--AC-AATAA---TCGGACG----T-GAGAAATAA-C-----A-C-TGATTTAA-ATT--GGGATTTTCTGTTAA---TAAGCAAAGAGTAAGAAATGCAAGTT-TTA-TTGT-GA-AGGGAGTTAG--TAGGAT--G-TGTACGGAAGAGTG-AACACTC-TTGAAGCGGGCGAAG-ATGTT-AGTTTCAGta
gi|30 : C--TATCAC-GATAA-AAC-TTGC--ATTTCT-T-ACCTAAATTTAC---AT--AGT-GTTAAA--TCC-----g
gi|31 : TACTTT-AAATGAC-TTTCACTTA-TCACAAAGCATT-T-CAAAAACGT--GAAAA
gi|32 : ATCT-CAGCT-G-AGATTC-----ATTGAGGATG-----AAT--A-TTT--GGAC-T--GA--C-GCC-T
gi|33 : tATCT-CGG-TTG-AGATTCTCTTTGGCTTGGCTG-----GAT--A-TTT--GGAC-T--
gi|34 : -T-G-AGATTC-----AGCTCGGCTG-----GAT--A-TTT--GGAC-T--Gtg
gi|35 : tctaggtATCT-CGG-TTG-AGATTC-----AGCTCGGCTG-----GAT--A-TTT--GGTC-T--Gccgc
gi|36 : TCT-CAG-T-G-AGATTC-----GTCGAGGCT------AAT--ATTTT--GGAC-T--GGt
gi|37 : ATCT-CGG-T-GGAGATTC-----GGCTCAGCTG-----GAT--G-TTT--GGAC-c
gi|38 : ATCT-CGG-TTG-AGATTC-----GGCTCGGCTG-----GAT--A-TTT--GGt
gi|39 : ATCT-CAGGT-G-AGATTC-----GGCTTGGCTG-----GAT--A-TTT--GGta
gi|4 : aATCT-CAT-G-G-AGATG------GTAAAAGCTA-----AAT--A-TTTTTGGACCT--GG--C-GCT-TTTAC--C--A--TCTC--------AAA--C----CAATG-TCAC-A----AC-TT-AT-TCCGGG-AAAATTT-C-CCT--C--AACTTC---CGGTCG--C--TGT------TGCGATTA-AAA---------------AATAACTT----------AAA-------ACT--GACATCTTTGC-----C--GCTTCAAA---TT-TTTCCAC-CTTAGA-CATCC-TACTAACTCCC-TGTCAC-AATAAGAAT-TTGC--ATTTCT-TTACC----TTTTC---ATA--GT-GTTAAA--TCC-----AAT-TTTAA--------A-TCA-AGTTCG---T-------------TATTTT-CACG-TCCA--TTCAA-T---G--AT--TTTGTGCTTTTCTC-AACCACTGAA-GA-GTTTCCA------A----AT--------TGAT---A-GTTT-TG--T---ACT--ATC---------------A---AACTA----------GTCTT-AAGGAT-A--CAG--GC--TGT-TA-----TCTTTACTTTTCAATGAC-TTTTACTTTGTCACAAAGCATT-TTCAAAATCATTTGAAAAACAAA-ATTAACAAATAGAAAACT-ACGTAAATTTC-AAACAG------TCTATCTGAAAACATTTTTAAAAACCGTTCATGTTACCTCAA-GACTAA-TACATAGTACCAAAC---TA-TCAA-------
gi|40 : aCGAGGCTG-----GAT--A-TTT--GAAC-T--GA--C-GCC-TCTTC--C--
gi|5 : cATCTACAG-T-G-AGATTC-----GTCGAGGCTA-----CAT--A-TTT--TGAC-T--GGC-C-GCC-TCTTC--A--AA-TATC--------AGAA-C----CAATG-TAAC-A-C-AACCTTTATAGC-GGG-AAATTTTTG-CCTTCC--ATCTTC---GG-CCG--C-TTGTC-----TGCGATTA-AA--GG--TAAA--ACTGAATATCTTGCCCGCTCTCAAA-TCTCACACTTAGACATCCCTGCGA-TACTAACTC----------------C-CT------ATCC-T------------------GATAA-AA--TTGC--A-TTCT-T-ACTAAA-TTTAC---AT--AGT-GTTAGAATTCC-----CACATTTAA-----------TA-GGTTCGA--TTCATATTCAAACCTATTGCAAATG-GC----TTC---C---GGAAT--TTCATGCTCT-CTC-AAC-ACTGAA-GA-GTTCCTA------ATAGTATATTTCA--TAAA---A-GTTT-G---T---ACT--AGCTTATTTAGTGGAGAAA---A-CTGT---------GTCTTGAATG-T-A--CA---ACACT-TCTAAGCGTCCTCAACCTTCAAATGACAACC-ACTGC-TCACAAAGCA
gi|6 : taATCTACAG-T-G-AGATTC-----GTCGAGGCTA-----CAT--A-TTT--TGAC-T--GGC-C-GCC-TCTTC--A--AA-TATC--------AGAA-C----CAATG-TAAC-A-C-AACCTTTATAGC-GGG-AAATTTTTG-CCTTCC--ATCTTC---GG-CCG--C-TTGTC-----TGCGATTA-AA--GG--TAAA--ACTGAATATCTTGCCCGCTCTCAAA-TCTCACACTTAGACATCCCTGCGA-TACTAACTC----------------C-CT------ATCC-T------------------GATAA-AA--TTGC--A-TTCT-T-ACTAAA-TTTAC---AT--AGT-GTTAGAATTCC-----CACATTTAA-----------TA-GGTTCGA--TTCATATTCAAACCTATTGCAAATG-GC----TTC---C---GGAAT--TTCATGCTCT-CTC-AAC-ACTGAA-GA-GTTCCAATAGTATA----TT--------TCATAAAA-GTTT-GTACT---ACT--AT
gi|7 : cactaa--T---ACT---TG---------------A---A-TTA----------GTCTT-GAAG-T-ATACAG--AC-CTGTCTA-----TCTCTACTTTTAAATGAC-TTT-ACTCA-TCACAAAGCATT-T-CAAAATCAT--GAAAATC--A-ATTGACAAATAGAAAACT-ACGTAAATTTC-AACCAGTCTGACTCTGTCTGAGGACAGTTTT--AGAC-------------------ACTAG----ATGGTA-CAAAC---TA-TCAA-------TTTGGAACTCTTCAGTGTTGAGAAAGC--AC-AA-AA---T-ATATT----T-G--AAAT-A-CA--A-G-TTTTATAGTA-ATA--GGGAGTTAt
gi|7 : acaGAAATACAAGTT-TTA-TAGT-AATAGGGAGTTAG--TAG-----GATGTCT--AAG-ATG-AAAA--T-TAGAAGTGAGC-AAG-A----------AATT-CACTTT-AATTG--CAAC--------T-GA-AGTACAGGCAAGATTTC-CCAAAATCA--C--TA-TA-TGAC-gtaggatgtctaagatgaaaattagaagtgagcaagaaattcactttaattgcaactgaagtacaggcaagatttcccaaaatcactatatgac
gi|8 : acatacttgaattagtcttgaagtatacagacctgtctatctctacttttaaatgactttactcatcacaaagcatttcaaaatcatgaaaatcaattgacaaatagaaaactacgtaaatttcaaccagtctgactctgtctgaggacagttttagacactagatggtacaaactatcaatttggaactcttcagtgttgagaaagcacaaaatatattt---CAC-CTTAGA-CATCC-TACTAACTCCC-TATCGC-GATAA-AAC-TTGC--ATTTCT-T-ACC----TTTAC---ATA-A-T-GTTAAA--TCC-----CACATTCAATAGGGTCGA-TCA-TTTTCAAACT-------------TATTGCAAATG-GC----TTC---CCGGA--AT--TTCATGCTCT-CTC-AAC-ACTGAA-GA-GTTCCAAT-----A----GTCTATTTCATAAT---A-GTAT-GTACT---ACT--ATT---------------T---A-GTAAGAAAACAGTGTCTG-AATG-T-A--CA---ACACTTTCTA-----AAGCGGCCTTCAAATGACAACC-ACTGC-TCACAAAGCACT-T-TAG---CAT--GAGATTTAAA-AACAATATAGAGAAAACT---GTCAAATTC-TAACAA------TCTAT
gi|9 : AAC---TA-TCAA-------TTTGGAACTCTTCAG-----------C--AC-AA-AA---T-G-ACG----TTGA-AAATAA-CG--A-A-CTTGATTTAA-ATT--GG-ATTTAACACT------ATGAAAAG-GTAAGAAATGCAA--T-TTACTGGTGGACAGGGAGTTAGTTTAG-----GATGTCT--AAG-GTGAAAAA--T-TTGAAGCGGGC-AGA-ATGTTCAGTTTAAGTGTATTTT--ATCG--TAACAG-GCGA-CGGA-AGTTGAGGCAATTTTTC-CC-GAATTAAGGATTGATG-TGAC-A-TTGGTCCGAGAT--T---GGTA-AAGGC----------GA-------------C-CAGTCCAAATAT--TTTA---GC--C---T----TT------C-C-AT-C-TCAt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): CAATATTCTATCGTAAAGTTGCACACATTTAAATTATGTATGTACATGGATAGTGTCTGCAAAAATGACAACCACAGCTCACAAAGCACTTCAGCATGAAATTTAAAAACAATA
Alignments
lowQualScore : 111111 1111111 11111111 11 1111 1 11111 111 11 222222 333333 888888888888888888888888888888888888888888888888888888888888888888 111 2222 11 11 111111 3333333333 7777777777777777777 44444444444444444444 11 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 1111 111 1 1 11111 11 1 11 111111 11 111 1 1111111 44444444444 111 1111 111 3333333 222222222 1 2222222 1111111111111111111111111 2222222222222222
lowQualScore : 4 4 8 2 111111 0 1 1 44 2 33 999 0000000 88888888 66 5 0 5 888 1111 5 5 3 1 5 55555 1 000 22 77 77 777777 5 222222 3 99 0 7 0 888 9 0 0 777777777777777777777777777777777777777777777777777777777777777777 4 5 66 1 222 9999 777 77 8 22 111111 0 4444444444 5 1111111111111111111 1 55 55555555555555555555 77 0 4 5 00 5 5 5 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 1 5 1111 999 1 0 3 44444 0 7 55 0 00 9999 0 77 6 6 3 6 999999 0 88 4 2 6 6 3 6 9999 1 6 000 1 0 8888888 66666666666 77 5 5 000 666 2222 4 4 4 111 4 4 55 55 4444444 1 4 2 4 4 5 4 1 55 000000000 66 4 44 66 4 4 4 5 4 4 55 333 8 3 1 33 3 3 666 3 3 4 4 8888 7777777 555 8888888888888888888888888 2 33 666 66666 999 33 666 1111111111111111 2 2
lowQualScore : . . . . ...... . . . .. . .. ... ....... ........ .. . . . ... .... . . . . . ..... . ... .. .. .. ...... . ...... . .. . . . ... . . . .................................................................. . . .. . ... .... ... .. . .. ...... . .......... . ................... . .. .................... .. . . . .. . . . ....................................................................................... . . . .... ... . . . ..... . . .. . .. .... . .. . . . . ...... . .. . . . . . . .... . . ... . . ....... ........... .. . . ... ... .... . . . ... . . .. .. ....... . . . . . . . . .. ......... .. . .. .. . . . . . . .. ... . . . .. . . ... . . . . .... ....... ... ......................... . .. ... ..... ... .. ... ................ . .
lowQualScore : 7 4 9 2 222222 3 7 9 55 1 11 333 6666666 11111111 99 7 7 7 666 7777 7 7 0 4 7 99999 9 000 00 99 44 999999 7 555555 7 22 3 0 2 888 0 8 8 444444444444444444444444444444444444444444444444444444444444444444 4 7 11 9 444 4444 888 22 9 22 888888 1 9999999999 7 4444444444444444444 3 77 77777777777777777777 99 4 0 7 00 7 7 7 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 4 7 7 6666 333 4 7 7 33333 7 0 55 0 99 1111 3 99 7 7 2 7 222222 6 66 2 5 7 7 2 7 3333 7 7 000 4 1 6666666 77777777777 99 7 7 000 999 1111 4 4 4 999 0 0 22 55 6666666 0 4 5 0 0 2 0 9 55 111111111 11 4 66 11 4 4 4 1 4 4 55 888 2 6 4 00 6 6 444 6 6 0 0 5555 0000000 666 8888888888888888888888888 5 44 999 22222 444 44 999 6666666666666666 7 7
consensus : ATCT-CAG-T-G-AGATTC-----GTCGAGGCTGGATA-TTT--GGAC-T--GGTC-GCCTCTAC--C--A-TCTC--------AGAA-CCAATG-TCAC-A-C-AACCTT-AT-TC-GGG-AAANTTT-G-CCT--C--AACTTC---CG-TCG--C-CTGT------TGCGATTA-AAATGGC-TTAA--ACTGAATATCTTGCCCGCTCTCAAA-TCTCACACTTAGACATCCCTGCGA-TACTAACTTCAAA---TT-T---CAC-CTTAGA-CATCC-TACTAACTCC--TATCGC-GATAA-AACTTGC--ATTTCT-T-ACC----TTT---ACATA-AGT-GTTAAA--TCC-----CACATTTAA--------A-TCA-GGTTCGA--T-------------TATTTCACACG-GC----TTC---C---G--AT--TTCGTGCTCT-CTC-AAC-ACTGAA-GA-GTTCCAA------A----AT--------TGAT---A-GTTT-GT--T---ACT--ATC---------------A---A-CTA----------GTCTT-AAGG-T-A--CAG--AC-CTGTCTA-----TCTCTACTTTTAAATGAC-TTT-ACTTN-TCACAAAGCATT-T-CAAAATCAT--GAAAAACAAA-ATTAACAAATAGAAAACT-ACGTAAATTTC-AAACAG------TCTATCTGAAAACATTTTT-AAAACCGTTC-TG-TACCTCAA-GACTAA-TCCATAGTA-CAAAC---TA-TCAA-------TTTGGAACTCTTCAG----------GC--AC-AA-AA---T-GGACG----T-GA-AAATAA-CG--A-A-CTTGATTTAA-ATT--GGGATTTAACACT-----TATGNAAAG-GTAAGAAATGCAAGTT-TTA-TAGT-GATAGGGAGTTAG--TAGGAT--GATGTCT--AAG-GTG-AAAA--T-TTGAAGCGGGC-AAG-ATGTTCAGTTTAAGT-CATTTT-AATCG--CAACAA-GCGGC-GA-AGTTGAGGCAAGATTTC-CC-GAATCA---CTTTG-TG-TGAC-A-TTG----GTCTGAGA---T---GGTA-AAGGC----------GA-------------C-CAGTCCAAAT--A---TT-----TA---GC--C---T----CG-----AC-C-AT-C-TCACTGAGAA
Reference ( family-605 ) : ATCT-CAG-T-G-AGATTC-----GTCGAGGCTGGATA-TTT--GGAC-T--GGTC-GCCTCTAC--C--A-TCTC--------AGA--CCAATG-TCAC-A-C-AACCTT-AT-TC-GGG-AAANTTT-G-CCT--C--AACTTC---CG-CCG--C-CTGT------TGCGATTA-AAATGGC-TTAA--ACTGAATATCTTGCCCGCTCTCAAA-TCTCACACTTAGACATCCCTGCGA-TACTAACTTCAAA---TT-T---CAC-CTTAGA-CATCC-TACTAACTCC--TATCGC-GATAA-AACTTGC--ATTTCT-T-ACC----TTT---ACATA-AGT-GTTAAA--TCC-----CACATTTAA--------A-TCA-GGTTCGA--T-------------TATTTCACACG-GC----TTC---C---G--AT--TTCGTGCTCT-CTC-AAC-ACTGAA-GA-GTTCCAA------A----AT--------TGAT---A-GTTT-GT--T---ACT--ATC---------------A---A-CTA----------GTCTT-AAGG-T-A--CAG--AC-CTGTCTA-----TCTCTACTTTTAAATGAC-TTT-ACTTN-TCACAAAGCATT-T-CAAAATCAT--GAAAAACAAA-ATTAACAAATAGAAAACT-ACGTAAATTTC-AAACAG------TCTATCTGAAAACATTTTT-AAAACCGTTC-TG-TACCTCAA-GACTAA-TCCATAGTA-CAAAC---TA-TCAA-------TTTGGAACTCTTCAG----------GC--AC-AA-AA---T-GGACG----T-GA-AAATAA-CG--A-A-CTTGATTTAA-ATT--GGGATTTAACACT-----TATGNAAAG-GTAAGAAATGCAAGTT-TTA-TAGT-GATAGGGAGTTAG--TAGGAT--GATGTCT--AAG-GTG-AAAA--T-TTGAAGCGGGC-AAG-ATGTTCAGTTTAAGT-CATTTT-AATCG--CAACAA-GCGGC-GA-AGTTGAGGCAAGATTTC-CC-GAATCA---CTTTG-TG-TGAC-A-TTG----GTCTGAGA---T---GGTA-AAGGC----------GA-------------C-CAGTCCAAAT--A---TT-----TA---GC--C---T----CG-----AC-C-AT-C-TCACTGAGAA
gi|1 : ATCT-CAG-T-G-AGATG------GTAGAGGCTAAATA-TTT--GGAC-T--GGTC-GCCTTTAC--C--A-TCTC--------AGA--CCAATG-TAAC-A-C-AACCTT-AT-TC-GGG-AAAATTT-G-CCT--C--AACTTC---CG-TCG--C-CTGT------TGCGATTA-AAATGGC-TTAA--ACTGAACATCCTGTCGNNNNNNNNN-NNNNNNNNNNNNNNNNACGAACGGGTA-TAACTTCAAAAATTTAT---CACACTTGGAATATCCATACTAACTCC--TATCAC-AATAA-AACTTGC--ATTTCT---ACC----TTT---CTATA-AGT-GTTAAA--TCC-----CA-ATTTAA--------A-TCA-AGTT-GG--T-------------TATTTCACACG--------TC---C------AT--TTTGTGCT-T-CT--AAC-ACTGAA-GA-GTTCCAA------A----AT--------TGAT---A-GCTT-GT--T---ACT--GTC---------------A---A-CTA----------GTCTT-AAGG-T-A--CAG--AC-CTGTTTA-----TCGTTACTTTTAAATGAC-TTT-ACTTG-TCACAAAGCATT-T-CAAAATCAT--GAAAAACAAA-ATTAACAAATAGAAAACT-ACGTAAATTTC-AAACAG------TCTATCTGAAAACATTTTT--AAACCGTTC-TG-TACCTCAA-GACTAA-TCCATAGTA-CAAAC---TA-TCAA-------TTTGGAACTCTTCA-----------GC--AC-AA-AA---T-GGACG----T-GA-AAATAA-CG--A-A-CTTGATTTAA-ATT--GGGATTTAACACTTATTCTATGAAAAG-GTAAGAAATGCAAGTT-TTA-TTGT-GATCGGGAGTTAG--TAGGATCCGATGTCT--AAG-GTG-AAAA--T-TTGAAGCGGGC-AAG-ATGTTCAGTTTAGGT-TATTTT-AATTG--CAACAG-GCGGCGGG-AGTTGAGGTAAATTTTC-CC-GAATAA---GGTTG-TG-TTGC-A-TTG----GTCTGAGA---T---GGTA-AAGGC----------GA-------------C-CAGTCCAAAT--A---TT-----TA---GC--C---T----CT-----AC-C-AT-C-TCACTGAGAA
gi|10 : AA----------GC--AC-AA-AC---T-ATATG----T-GA-AAATAA-CC--A-A-CTTGATTTAA-TTT--GGGACTGAACACT------ACATAAAG-ATAAGAAATGCAA-TT-TTA-TAGT-GATAAGGAGTTAG--TAAGAT--G---TCT--AAG-GTG-AAAA--T-CTGAAGCAGGC-AAG-AAATTCAGTTTCAGC-CATTTT-AATCG--CAACAA-GTGGCAGA-AGTTGAGGCAAGATTTC-CC-AAATCA---CTTTA-TG-TGAC-A-CTG----GTCTGAGA---TTC-AG-A-GAGGT----------GA-------------C-CAGTCCAAAT--A---AT-----GA---GC--CTTGT----CG-----A----AT-C-TCACTGAGAt
gi|11 : cttcagtgttgaga-GA-AAATAAACC--A-A-CTTG-TTTAA-ATTTTGGGATTTAACACT------ATGCAAAG-GTAAGAAATGCAAGTTCTTA-TTGC-GACATGGTGTTAG--TAGGAT--GAT-TCT--AAG-GTG-TAAA--T-TTGAATC-GGC-AAGAATGTTCAGTTTAAGC-CATTTTAAATCG--CAACAA-GCGGC-CA-AGTTGAGGCAA-ATTTCACC-GAATAA---GTAGT-TG-TGAC-ATTTG----GTC-GAGAT--T---CGTA-GAGAC----------GG-------------CTCAGTCCAAAT--A---TT-----TACTCGCTTC---T----CG-----ACGA-AT-C-TCGCTGAAAA
gi|12 : -GA-AAATAA-CACTA-A-CTTGATTTA---CT--GTCATATAACATG-----TATGTAATG-GTAAGCCATGCAAGTT-CCA-TAAT-GAAAGGGATTTAA--CAAGGT--G---TCT--AAG--TC-AAAA--TGTTGAAGTGTGC-AAG-AAACTCAGACTAAGC-CATTTA-AATTT--TAACAA-GTGGCCAA-AGTTCAGACAAG-TTTC-CC-AAATCA---CTTTGAGG-TGAC-A-TCG----GTTTAAGA---TTCAGAT--GAGGC-----------A-------------T-CAACCCACAA--A---TC-----CA---AT--C---T----TG-----ACAA-AT-C-TCATCGAGA
gi|13 : AGACAGTTT-TG-TACCTCAA-GGCCAA-TGGATAGTA-CAAACTAATA-TGGAGTAGATTTTTGGAACTCTTCAAT---------GTTGAG-AA-AATATT-GAATATGTTT-GA-AAATAA-CA--A-T-CTTGATTTACTTTT--GGGATTTAACAC------TATGTAAAG-GTAAGAAATTCTAGAT-TTA-TAAT-CATAGGGAcaac
gi|14 : tATAGTGAGTTAG--TAG------ACGCTT--AAG-ATA-AAGA--T-TAGAAGCGGGC-AGA-AAATTCAGTTTAAGT-CATGTT-AATCG--CAA----------------TCAGGCAAGATTTC-CC-GAATCA---CTTTG-TG-CGAG-A-CTG----GTCTGAGA---TTC-GG-A-AGAGC----------GC-------------C-AAGACC-AAT--A---TT-----CAG--GC--C---T----CG-----AC-G-AA-CTTCGCTGActaaggtaaatcaaagtccttaaagttctgaaacgag
gi|15 : taataTCG--CAACAA-GCGGCAGA-AGTTCAGGCAAGATTTC-CC-GAATCA---CTTTG-TG-TGAC-A-CTGACCAGTCTGAGATT-T---GGAA-GAGGT----------GA-------------C-CAGTCCAAATAAA---TTAGCGGCA---GC--C---T----CG-----ATGA-AT-C-TCGCCGgcaaaccgtcttctacaaatac
gi|15 : --A-A-CTTGATTTAA-TTT--GAGATTTAACAC------TATGTAAAG-GTAAGAAA----------TA-TAGT-GATGGGGGGTTAG--TAGGAT--Gcatcctactaaccccccatcactatatttcttacctttacatagtgttaaatctcaaattaaatcaagtt
gi|16 : cggcgagattcatcgaggctgccgctaatttatttggactggtcacctcttccaaatctcagactggtcagtgtcacacaaagtgattcgggaaatcttgcctgaacttctgccgcttgttgcgaAGCCTAAATA-TTTT-GGAC-TTTGATCCGCCTTCAC--C--A-TCTC--------AGAACCCAATGTTCAC-A-CAAACCGT-AT-TC-GGA-AA----T-G-CCT--TCAAACTTC---CG-TCGACC-CCGTTTTGAGTGCGATTA-
gi|17 : agccattccacatcaggtgaaatcaaa-CATTTT-A-TCG--CAACAAAGCGGC-GA-AGTCGAGGCAAGAT--C-CC-GAATCA---CTTTG-TG-TGACAA-CTG----GTCGGAGATTTT---GGAA-GAGACCT--------GA-------------C-CAGT-CAA----A---TT-----TA---GT--C---G----CG-----AC----T-C-TCTCGGAGA
gi|19 : ttagagTCT-AGA--------GTAGAAGGC----------GA-------------C-CAGTCCAAAT--A---TT-----TA---GC--C---T----CT-----AC-CAAT-C-TCACTGAGAt
gi|19 : -AAGGC----------GA-------------C-CAGTCCAAAT--A---TT-----T----GC--C---T----CT-----AC-CAAT-C-TCACTGAGAaggcgaccagtccaaatatttgcctctaccaatctcactgagattaa
gi|2 : tctcagtgagattggtagaggctaaatatttggactggtcgccttctactctagATCT-CAG-T---AGATG------GTAAAGGCTAAATA-TTT--GGAC-T--GGTCCGCCTTCAC--C--A-TCTC--------AGA--CCAAT--TCACAA-C-AACCTT-AG-TC-GG---AAATTT-G-CCT--C--AACTTC---CG-TCG--CGCTGT------TGCGA-TA-AAATAACATTAA--ACTGAACATCTTGCCCGCTTCAAAA-TTTCAC-CTTAG-CATCC-------TA-TAACGTCCCC---TA-T---CAC-AATAAA-CCTTC------ATTTC--TAT-----------ACCT-----TTTC-------------------ATA-AGT-GTTAAA--TCC-------CATTTAA--------ATTCA-GGTT-GG--T-------------TATTTCACGTGCAT----TTT---C---A--ATGATTTGTGCTTT-CTCAAAC-ACTGAACGA-GTTCC-A------A----AT--------TGAT---ATATTC-G-------A----ATC---------------A---A-CTA----------GTCTT-AAGG-TAA--CA---AC-CTGT-TA-----T-TTTACTTTTAAGTGAC-CTT-ACTT--TCA-AAAGCATTAA-AAAAATCAT--GAAAAACAAATATTAAC-AATAGGAAACTAACGT-AATTTCAAAACAG------TCTATCTGAAAACAGTTTT-AAAACCGTTC-TG-TACCTCAACGACTAATTCCATAGTA-CAAAC---TATTCAA-------ATTTGAACTCTTCA-----------GC--ACGAA-AA---T-GGACG----T-GA-AAATAA-CG--ATACCTTGATTTAA-ATT---GGATTTAACAC------TATGAAAAA-GTAAAAA--GCAAGTT-TTA-T-GT--ACAGTGAGTTAG--TAGGA------GTCT--AAG-GT--AAAA--T-TTGAATCGTGC-A---ATGTTCAGTTTAAGT-T-CTTT-AATCGCCCAAC-A-GCGAC-GA-AGTTGAGGCAA-ATTTC-CC-GAATAA---GTTGG-T----AC-A-TT------TCTGAGA---T----GTG-AA-GC-----------A-------------C-CAGTCCAAAT--A---TT-----TA---GC--C---T----TT-----AC-C-AT-C-TCACTGAGttaa
gi|20 : aACAA-ACGGC-CACAATTCAGGCAAGATTTC-CC-AAATTA---CTTTG-TGATG-C-A-TTG----GTCCGAGATTCT---GAT--AAGGC----------AA---------------CAGTT--ACT--A---TT-----CA---GC--C---T----CG-----Attt
gi|21 : tctTGAGA---T---GGTA-AAGGCTAAATATTTGGACTGGTCGCCTTCAC-CAGTCCAAAT--A---TT-----TA---GC--C---TTTA-CGGCTTTAC-C-AT-C-TCACTGAGAaata
gi|21 : taa---T---GGTG-AAGGC----------GA-------------C-CAGTCCAAAT--A---TT-----TA---GC--C---T----TT-----AC-C-AT-C-TCACTGAGActgagatta
gi|22 : taatctcagtgagatggtaaagccgtaaaggctaaatatttggacCAAA---TT-TTT-CAT-CTTAGA-CATC--TATTAACTCCCTTATCGCTGATTA-AACTTGC--ATTTCTAT-ACCT---TTT---ACATAGACTCGTTAAA--TCC-----tta
gi|23 : ATCT-CAG-C-C-AGATTT-----GTCGAGGCTGGATA-TTT--GAAC-T--GACC--CCTCTaa
gi|24 : ctcagcaATCT-CAG-T-A-ACATTT-----GTCAAGGCTAAATA-TTT--GGAC-T--GGTT-GCtaatgcacgactaacaagatgtaa
gi|25 : gcaaacgactgtatttggactgtccaaaat---T---GGTG-AAGGC----------GA-------------C-CAGTCC-AAT--A---TT-----TA---GC--CT--T----TT-----AC-C-ATCC-TCACTGAGA
gi|26 : aATCT-CAG-T-G-AGATTC-----GTCGAGACTAAATA-TTT--GGAC-T--GATT-GTCTCTAA--TGAA-TCTC--------AGA--gatggatgaagcgacc
gi|27 : ctaATCT-CAT-T-G-AGATTC-----ATCGAGGCTAAATA-TTA--TGAC-T--GGAT-GCATCT
gi|28 : agtgta----------GA-------------C-CAGTCCAAAT--AAATTT-----TAC--GC--C---TTCTACGGCTTTAC-C-AT-C-TCACTGAGAtca
gi|29 : ATCT-CAG-TTG-AGATTCTTTTTGGCTCGGCTGGATA-TTT--AGAC-T--TGT--GCCTtta
gi|3 : ga-TTT--GGAC-T--GGTC-GCCTTCACCAC--A-TCTCCGCAGGAGGGG--CTGATG--CAC-ACC-ACCCTT-CT-TC-GGGCCCACTTT-GCCCT--C----CCTCACTCG--TG--C-CTGT------TG-GATTACCCATACC-TTAACCCCTGAAAATCTTGCCCGCT-TCACATTTTCAC-CTTAGACAACTC--------CTAGC------------T---CAC-CCT--A-CATC---AATA-------CACCG-----------TTGCAAATTTCT-TAACC----TTTTCCAAAT--AGTGGTTCAC--TCCCACCACACATT--A--------C-TCACGGTT-GT--T-------------TATTTT-CACG-TCCATTTTCACAT---G--AT--T--GTGCTTT-CC---AC-ACTGGG-AACGTTAC-A------A----AT--------TGAT---A-GTTTGGG--TAAAACTAAATC---------------AATCA-CTA----------GTCTTAAAAG-T----CAGAAAC-CTGT-TA-----TCTCTACTTT--AGTGAC--TT-ACTTG-TCACAAAGCATT-T--AAAACTA---GAAAAACAAC-ATTAACAAATAGGAAACT-ACGTAAATTTC-AAATAG------TCTATCTGAAAACATTTTT-AA---CGTTC-TG-TACCTC-A-GACTAT-TCTGT--CA-CAAAC---TAGTC-A-------TTTGGAA--CATCA-----------GC--AC-AATAA---TCGGACG----T-GAGAAATAA-C-----A-C-TGATTTAA-ATT--GGGATTTTCTGTTAA---TAAGCAAAGAGTAAGAAATGCAAGTT-TTA-TTGT-GA-AGGGAGTTAG--TAGGAT--G-TGTACGGAAGAGTG-AACACTC-TTGAAGCGGGCGAAG-ATGTT-AGTTTCAGta
gi|30 : C--TATCAC-GATAA-AACTTGC--ATTTCT-T-ACCTAAATTT---ACAT--AGT-GTTAAA--TCC-----g
gi|31 : TACTTT-AAATGAC-TTTCACTTA-TCACAAAGCATT-T-CAAAAACGT--GAAAA
gi|32 : ATCT-CAGCT-G-AGATTC-----ATTGAGGATGAATA-TTT--GGAC-T--GA-C-GCCT
gi|33 : tATCT-CGG-TTG-AGATTCTCTTTGGCTTGGCTGGATA-TTT--GGAC-T--
gi|34 : -T-G-AGATTC-----AGCTCGGCTGGATA-TTT--GGAC-T--Gtg
gi|35 : tctaggtATCT-CGG-TTG-AGATTC-----AGCTCGGCTGGATA-TTT--GGTC-T--Gccgc
gi|36 : TCT-CAG-T-G-AGATTC-----GTCGAGGCT-AATATTTT--GGAC-T--GGt
gi|37 : ATCT-CGG-T-GGAGATTC-----GGCTCAGCTGGATG-TTT--GGAC-c
gi|38 : ATCT-CGG-TTG-AGATTC-----GGCTCGGCTGGATA-TTT--GGt
gi|39 : ATCT-CAGGT-G-AGATTC-----GGCTTGGCTGGATA-TTT--GGta
gi|4 : aATCT-CAT-G-G-AGATG------GTAAAAGCTAAATA-TTTTTGGACCT--GG-C-GCTTTTAC--C--A-TCTC--------AAA--CCAATG-TCAC-A----AC-TT-AT-TCCGGG-AAAATTT-C-CCT--C--AACTTC---CGGTCG--C--TGT------TGCGATTA-AAA---------------AATAACTT----------AAA-------ACT--GACATCTTTGC-----C--GCTTCAAA---TT-TTTCCAC-CTTAGA-CATCC-TACTAACTCCC-TGTCAC-AATAAGAATTTGC--ATTTCT-TTACC----TTT---TCATA--GT-GTTAAA--TCC-----AAT-TTTAA--------A-TCA-AGTTCG---T-------------TATTTT-CACG-TCCA--TTCAA-T---G--AT--TTTGTGCTTTTCTC-AACCACTGAA-GA-GTTTCCA------A----AT--------TGAT---A-GTTT-TG--T---ACT--ATC---------------A---AACTA----------GTCTT-AAGGAT-A--CAG--GC--TGT-TA-----TCTTTACTTTTCAATGAC-TTTTACTTTGTCACAAAGCATT-TTCAAAATCATTTGAAAAACAAA-ATTAACAAATAGAAAACT-ACGTAAATTTC-AAACAG------TCTATCTGAAAACATTTTTAAAAACCGTTCATGTTACCTCAA-GACTAA-TACATAGTACCAAAC---TA-TCAA-------
gi|40 : aCGAGGCTGGATA-TTT--GAAC-T--GA-C-GCCTCTTC--C--
gi|5 : cATCTACAG-T-G-AGATTC-----GTCGAGGCTACATA-TTT--TGAC-T--GGCC-GCCTCTTC--A--AATATC--------AGAA-CCAATG-TAAC-A-C-AACCTTTATAGC-GGG-AAATTTTTG-CCTTCC--ATCTTC---GG-CCG--C-TTGTC-----TGCGATTA-AA--GG--TAAA--ACTGAATATCTTGCCCGCTCTCAAA-TCTCACACTTAGACATCCCTGCGA-TACTAACTC----------------C-CT------ATCC-T------------------GATAA-AA-TTGC--A-TTCT-T-ACTAAA-TTT---ACAT--AGT-GTTAGAATTCC-----CACATTTAA-----------TA-GGTTCGA--TTCATATTCAAACCTATTGCAAATG-GC----TTC---C---GGAAT--TTCATGCTCT-CTC-AAC-ACTGAA-GA-GTTCCTA------ATAGTATATTTCA--TAAA---A-GTTT-G---T---ACT--AGCTTATTTAGTGGAGAAA---A-CTGT---------GTCTTGAATG-T-A--CA---ACACT-TCTAAGCGTCCTCAACCTTCAAATGACAACC-ACTGC-TCACAAAGCA
gi|6 : taATCTACAG-T-G-AGATTC-----GTCGAGGCTACATA-TTT--TGAC-T--GGCC-GCCTCTTC--A--AATATC--------AGAA-CCAATG-TAAC-A-C-AACCTTTATAGC-GGG-AAATTTTTG-CCTTCC--ATCTTC---GG-CCG--C-TTGTC-----TGCGATTA-AA--GG--TAAA--ACTGAATATCTTGCCCGCTCTCAAA-TCTCACACTTAGACATCCCTGCGA-TACTAACTC----------------C-CT------ATCC-T------------------GATAA-AA-TTGC--A-TTCT-T-ACTAAA-TTT---ACAT--AGT-GTTAGAATTCC-----CACATTTAA-----------TA-GGTTCGA--TTCATATTCAAACCTATTGCAAATG-GC----TTC---C---GGAAT--TTCATGCTCT-CTC-AAC-ACTGAA-GA-GTTCCAATAGTATA----TT--------TCATAAAA-GTTT-GTACT---ACT--AT
gi|7 : cactaa--T---ACT---TG---------------A---A-TTA----------GTCTT-GAAG-T-ATACAG--AC-CTGTCTA-----TCTCTACTTTTAAATGAC-TTT-ACTCA-TCACAAAGCATT-T-CAAAATCAT--GAAAATC--A-ATTGACAAATAGAAAACT-ACGTAAATTTC-AACCAGTCTGACTCTGTCTGAGGACAGTTTT--AGAC-------------------ACTAG----ATGGTA-CAAAC---TA-TCAA-------TTTGGAACTCTTCAGTGTTGAGAAAGC--AC-AA-AA---T-ATATT----T-G--AAAT-A-CA--A-G-TTTTATAGTA-ATA--GGGAGTTAt
gi|7 : acaGAAATACAAGTT-TTA-TAGT-AATAGGGAGTTAG--TAG-----GATGTCT--AAG-ATG-AAAA--T-TAGAAGTGAGC-AAG-A----------AATT-CACTTT-AATTG--CAAC-------T-GA-AGTACAGGCAAGATTTC-CCAAAATCA---CTATA-TG-gtaggatgtctaagatgaaaattagaagtgagcaagaaattcactttaattgcaactgaagtacaggcaagatttcccaaaatcactatatgac
gi|8 : acatacttgaattagtcttgaagtatacagacctgtctatctctacttttaaatgactttactcatcacaaagcatttcaaaatcatgaaaatcaattgacaaatagaaaactacgtaaatttcaaccagtctgactctgtctgaggacagttttagacactagatggtacaaactatcaatttggaactcttcagtgttgagaaagcacaaaatatattt---CAC-CTTAGA-CATCC-TACTAACTCCC-TATCGC-GATAA-AACTTGC--ATTTCT-T-ACC----TTT---ACATA-A-T-GTTAAA--TCC-----CACATTCAATAGGGTCGA-TCA-TTTTCAAACT-------------TATTGCAAATG-GC----TTC---CCGGA--AT--TTCATGCTCT-CTC-AAC-ACTGAA-GA-GTTCCAAT-----A----GTCTATTTCATAAT---A-GTAT-GTACT---ACT--ATT---------------T---A-GTAAGAAAACAGTGTCTG-AATG-T-A--CA---ACACTTTCTA-----AAGCGGCCTTCAAATGACAACC-ACTGC-TCACAAAGCACT-T-TAG---CAT--GAGATTTAAA-AACAATATAGAGAAAACT---GTCAAATTC-TAACAA------TCTATac
gi|9 : AAC---TA-TCAA-------TTTGGAACTCTTCAG-----------C--AC-AA-AA---T-G-ACG----TTGA-AAATAA-CG--A-A-CTTGATTTAA-ATT--GG-ATTTAACACT------ATGAAAAG-GTAAGAAATGCAA--T-TTACTGGTGGACAGGGAGTTAGTTTAG-----GATGTCT--AAG-GTGAAAAA--T-TTGAAGCGGGC-AGA-ATGTTCAGTTTAAGTGTATTTT--ATCG--TAACAG-GCGACGGA-AGTTGAGGCAATTTTTC-CC-GAATTAAGGATTGA-TG-TGAC-A-TTG----GTCCGAGAT--T---GGTA-AAGGC----------GA-------------C-CAGTCCAAAT--AT--TT-----TA---GC--C---T----TT------C-C-AT-C-TCAt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): CAATATTCTATCGTAAAGTTGCACACATTTAAATTATGTATGTACATGGATAGTGTCTGCAAAAATGACAACCACAGCTCACAAAGCACTTCAGCATGAAATTTAAAAACAATA
Alignments
lowQualScore : 111111 1111111 22222 111 1111 1 11111 111 222222 333333 888888888888888888888888888888888888888888888888888888888888888888 111 2222 11 11 111111 3333333333 7777777777777777777 44444444444444444444 11 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 1111 111 1 1 11111 11 1 11 111111 11 111 1 1111111 44444444444 111 1111 111 3333333 222222222 1 2222222 1111111111111111111111111 2222222222222222
lowQualScore : 4 4 8 2 111111 0 1 1 44 2 33 999 0000000 888 22222 5 0 444 1111 5 5 3 1 5 55555 1 000 5 77 77 777777 5 222222 3 99 0 7 0 888 9 0 0 777777777777777777777777777777777777777777777777777777777777777777 4 5 66 1 222 9999 777 77 8 22 111111 0 4444444444 5 1111111111111111111 1 55 55555555555555555555 77 0 4 5 00 5 5 5 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 1 5 1111 999 1 0 3 44444 0 7 55 0 00 9999 0 77 6 6 3 6 999999 0 88 4 2 6 6 3 6 9999 1 6 000 1 0 8888888 66666666666 77 5 5 000 666 2222 4 4 4 111 4 4 55 55 4444444 1 4 2 4 4 5 4 1 55 000000000 66 4 44 66 4 4 4 5 4 4 55 333 8 3 1 33 3 3 666 3 3 4 4 8888 7777777 555 8888888888888888888888888 2 33 666 66666 999 33 666 1111111111111111 2 2
lowQualScore : . . . . ...... . . . .. . .. ... ....... ... ..... . . ... .... . . . . . ..... . ... . .. .. ...... . ...... . .. . . . ... . . . .................................................................. . . .. . ... .... ... .. . .. ...... . .......... . ................... . .. .................... .. . . . .. . . . ....................................................................................... . . . .... ... . . . ..... . . .. . .. .... . .. . . . . ...... . .. . . . . . . .... . . ... . . ....... ........... .. . . ... ... .... . . . ... . . .. .. ....... . . . . . . . . .. ......... .. . .. .. . . . . . . .. ... . . . .. . . ... . . . . .... ....... ... ......................... . .. ... ..... ... .. ... ................ . .
lowQualScore : 7 4 9 2 222222 3 7 9 55 1 11 333 6666666 888 99999 7 7 333 7777 7 7 0 4 7 99999 9 000 7 99 44 999999 7 555555 7 22 3 0 2 888 0 8 8 444444444444444444444444444444444444444444444444444444444444444444 4 7 11 9 444 4444 888 22 9 22 888888 1 9999999999 7 4444444444444444444 3 77 77777777777777777777 99 4 0 7 00 7 7 7 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 4 7 7 6666 333 4 7 7 33333 7 0 55 0 99 1111 3 99 7 7 2 7 222222 6 66 2 5 7 7 2 7 3333 7 7 000 4 1 6666666 77777777777 99 7 7 000 999 1111 4 4 4 999 0 0 22 55 6666666 0 4 5 0 0 2 0 9 55 111111111 11 4 66 11 4 4 4 1 4 4 55 888 2 6 4 00 6 6 444 6 6 0 0 5555 0000000 666 8888888888888888888888888 5 44 999 22222 444 44 999 6666666666666666 7 7
consensus : ATCT-CAG-T-G-AGATTC-----GTCGAGGCTGGATA-TTT--GGAC-T--GGTC-GCCTCTAC--C--A-TCT---CAGAA----CCAATG-TCACA-C-AACCTT-AT-TC-GGG-AAANTTT-G-CCT--C--AACTTC---CG-TCG--C-CTGT------TGCGATTA-AAATGGC-TTAA--ACTGAATATCTTGCCCGCTCTCAAA-TCTCACACTTAGACATCCCTGCGA-TACTAACTTCAAA---TT-T---CAC-CTTAGA-CATCC-TACTAACTCC--TATCGC-GATAA-AACTTGC--ATTTCT-T-ACC----TTT---ACATA-AGT-GTTAAA--TCC-----CACATTTAA--------A-TCA-GGTTCGA--T-------------TATTTCACACG-GC----TTC---C---G--AT--TTCGTGCTCT-CTC-AAC-ACTGAA-GA-GTTCCAA------A----AT--------TGAT---A-GTTT-GT--T---ACT--ATC---------------A---A-CTA----------GTCTT-AAGG-T-A--CAG--AC-CTGTCTA-----TCTCTACTTTTAAATGAC-TTT-ACTTN-TCACAAAGCATT-T-CAAAATCAT--GAAAAACAAA-ATTAACAAATAGAAAACT-ACGTAAATTTC-AAACAG------TCTATCTGAAAACATTTTT-AAAACCGTTC-TG-TACCTCAA-GACTAA-TCCATAGTA-CAAAC---TA-TCAA-------TTTGGAACTCTTCAG----------GC--AC-AA-AA---T-GGACG----T-GA-AAATAA-CG--A-A-CTTGATTTAA-ATT--GGGATTTAACACT-----TATGNAAAG-GTAAGAAATGCAAGTT-TTA-TAGT-GATAGGGAGTTAG--TAGGAT--GATGTCT--AAG-GTG-AAAA--T-TTGAAGCGGGC-AAG-ATGTTCAGTTTAAGT-CATTTT-AATCG--CAACAA-GCGGC-GA-AGTTGAGGCAAGATTTC-CC-GAATCA---CTTTG-TG-TGAC-A-TTG----GTCTGAGA---T---GGTA-AAGGC----------GA-------------C-CAGTCCAAAT--A---TT-----TA---GC--C---T----CG-----AC-C-AT-C-TCACTGAGAA
Reference ( family-605 ) : ATCT-CAG-T-G-AGATTC-----GTCGAGGCTGGATA-TTT--GGAC-T--GGTC-GCCTCTAC--C--A-TCT---CAGAA----CCAATG-TCACA-C-AACCTT-AT-TC-GGG-AAANTTT-G-CCT--C--AACTTC---CG-TCG--C-CTGT------TGCGATTA-AAATGGC-TTAA--ACTGAATATCTTGCCCGCTCTCAAA-TCTCACACTTAGACATCCCTGCGA-TACTAACTTCAAA---TT-T---CAC-CTTAGA-CATCC-TACTAACTCC--TATCGC-GATAA-AACTTGC--ATTTCT-T-ACC----TTT---ACATA-AGT-GTTAAA--TCC-----CACATTTAA--------A-TCA-GGTTCGA--T-------------TATTTCACACG-GC----TTC---C---G--AT--TTCGTGCTCT-CTC-AAC-ACTGAA-GA-GTTCCAA------A----AT--------TGAT---A-GTTT-GT--T---ACT--ATC---------------A---A-CTA----------GTCTT-AAGG-T-A--CAG--AC-CTGTCTA-----TCTCTACTTTTAAATGAC-TTT-ACTTN-TCACAAAGCATT-T-CAAAATCAT--GAAAAACAAA-ATTAACAAATAGAAAACT-ACGTAAATTTC-AAACAG------TCTATCTGAAAACATTTTT-AAAACCGTTC-TG-TACCTCAA-GACTAA-TCCATAGTA-CAAAC---TA-TCAA-------TTTGGAACTCTTCAG----------GC--AC-AA-AA---T-GGACG----T-GA-AAATAA-CG--A-A-CTTGATTTAA-ATT--GGGATTTAACACT-----TATGNAAAG-GTAAGAAATGCAAGTT-TTA-TAGT-GATAGGGAGTTAG--TAGGAT--GATGTCT--AAG-GTG-AAAA--T-TTGAAGCGGGC-AAG-ATGTTCAGTTTAAGT-CATTTT-AATCG--CAACAA-GCGGC-GA-AGTTGAGGCAAGATTTC-CC-GAATCA---CTTTG-TG-TGAC-A-TTG----GTCTGAGA---T---GGTA-AAGGC----------GA-------------C-CAGTCCAAAT--A---TT-----TA---GC--C---T----CG-----AC-C-AT-C-TCACTGAGAA
gi|1 : ATCT-CAG-T-G-AGATG------GTAGAGGCTAAATA-TTT--GGAC-T--GGTC-GCCTTTAC--C--A-TCT---CAGA-----CCAATG-TAACA-C-AACCTT-AT-TC-GGG-AAAATTT-G-CCT--C--AACTTC---CG-TCG--C-CTGT------TGCGATTA-AAATGGC-TTAA--ACTGAACATCCTGTCGNNNNNNNNN-NNNNNNNNNNNNNNNNACGAACGGGTA-TAACTTCAAAAATTTAT---CACACTTGGAATATCCATACTAACTCC--TATCAC-AATAA-AACTTGC--ATTTCT---ACC----TTT---CTATA-AGT-GTTAAA--TCC-----CA-ATTTAA--------A-TCA-AGTT-GG--T-------------TATTTCACACG--------TC---C------AT--TTTGTGCT-T-CT--AAC-ACTGAA-GA-GTTCCAA------A----AT--------TGAT---A-GCTT-GT--T---ACT--GTC---------------A---A-CTA----------GTCTT-AAGG-T-A--CAG--AC-CTGTTTA-----TCGTTACTTTTAAATGAC-TTT-ACTTG-TCACAAAGCATT-T-CAAAATCAT--GAAAAACAAA-ATTAACAAATAGAAAACT-ACGTAAATTTC-AAACAG------TCTATCTGAAAACATTTTT--AAACCGTTC-TG-TACCTCAA-GACTAA-TCCATAGTA-CAAAC---TA-TCAA-------TTTGGAACTCTTCA-----------GC--AC-AA-AA---T-GGACG----T-GA-AAATAA-CG--A-A-CTTGATTTAA-ATT--GGGATTTAACACTTATTCTATGAAAAG-GTAAGAAATGCAAGTT-TTA-TTGT-GATCGGGAGTTAG--TAGGATCCGATGTCT--AAG-GTG-AAAA--T-TTGAAGCGGGC-AAG-ATGTTCAGTTTAGGT-TATTTT-AATTG--CAACAG-GCGGCGGG-AGTTGAGGTAAATTTTC-CC-GAATAA---GGTTG-TG-TTGC-A-TTG----GTCTGAGA---T---GGTA-AAGGC----------GA-------------C-CAGTCCAAAT--A---TT-----TA---GC--C---T----CT-----AC-C-AT-C-TCACTGAGAA
gi|10 : AA----------GC--AC-AA-AC---T-ATATG----T-GA-AAATAA-CC--A-A-CTTGATTTAA-TTT--GGGACTGAACACT------ACATAAAG-ATAAGAAATGCAA-TT-TTA-TAGT-GATAAGGAGTTAG--TAAGAT--G---TCT--AAG-GTG-AAAA--T-CTGAAGCAGGC-AAG-AAATTCAGTTTCAGC-CATTTT-AATCG--CAACAA-GTGGCAGA-AGTTGAGGCAAGATTTC-CC-AAATCA---CTTTA-TG-TGAC-A-CTG----GTCTGAGA---TTC-AG-A-GAGGT----------GA-------------C-CAGTCCAAAT--A---AT-----GA---GC--CTTGT----CG-----A----AT-C-TCACTGAGAt
gi|11 : cttcagtgttgaga-GA-AAATAAACC--A-A-CTTG-TTTAA-ATTTTGGGATTTAACACT------ATGCAAAG-GTAAGAAATGCAAGTTCTTA-TTGC-GACATGGTGTTAG--TAGGAT--GAT-TCT--AAG-GTG-TAAA--T-TTGAATC-GGC-AAGAATGTTCAGTTTAAGC-CATTTTAAATCG--CAACAA-GCGGC-CA-AGTTGAGGCAA-ATTTCACC-GAATAA---GTAGT-TG-TGAC-ATTTG----GTC-GAGAT--T---CGTA-GAGAC----------GG-------------CTCAGTCCAAAT--A---TT-----TACTCGCTTC---T----CG-----ACGA-AT-C-TCGCTGAAAA
gi|12 : -GA-AAATAA-CACTA-A-CTTGATTTA---CT--GTCATATAACATG-----TATGTAATG-GTAAGCCATGCAAGTT-CCA-TAAT-GAAAGGGATTTAA--CAAGGT--G---TCT--AAG--TC-AAAA--TGTTGAAGTGTGC-AAG-AAACTCAGACTAAGC-CATTTA-AATTT--TAACAA-GTGGCCAA-AGTTCAGACAAG-TTTC-CC-AAATCA---CTTTGAGG-TGAC-A-TCG----GTTTAAGA---TTCAGAT--GAGGC-----------A-------------T-CAACCCACAA--A---TC-----CA---AT--C---T----TG-----ACAA-AT-C-TCATCGAGA
gi|13 : AGACAGTTT-TG-TACCTCAA-GGCCAA-TGGATAGTA-CAAACTAATA-TGGAGTAGATTTTTGGAACTCTTCAAT---------GTTGAG-AA-AATATT-GAATATGTTT-GA-AAATAA-CA--A-T-CTTGATTTACTTTT--GGGATTTAACAC------TATGTAAAG-GTAAGAAATTCTAGAT-TTA-TAAT-CATAGGGAcaac
gi|14 : tATAGTGAGTTAG--TAG------ACGCTT--AAG-ATA-AAGA--T-TAGAAGCGGGC-AGA-AAATTCAGTTTAAGT-CATGTT-AATCG--CAA----------------TCAGGCAAGATTTC-CC-GAATCA---CTTTG-TG-CGAG-A-CTG----GTCTGAGA---TTC-GG-A-AGAGC----------GC-------------C-AAGACC-AAT--A---TT-----CAG--GC--C---T----CG-----AC-G-AA-CTTCGCTGActaaggtaaatcaaagtccttaaagttctgaaacgag
gi|15 : taataTCG--CAACAA-GCGGCAGA-AGTTCAGGCAAGATTTC-CC-GAATCA---CTTTG-TG-TGAC-A-CTGACCAGTCTGAGATT-T---GGAA-GAGGT----------GA-------------C-CAGTCCAAATAAA---TTAGCGGCA---GC--C---T----CG-----ATGA-AT-C-TCGCCGgcaaaccgtcttctacaaatac
gi|15 : --A-A-CTTGATTTAA-TTT--GAGATTTAACAC------TATGTAAAG-GTAAGAAA----------TA-TAGT-GATGGGGGGTTAG--TAGGAT--Gcatcctactaaccccccatcactatatttcttacctttacatagtgttaaatctcaaattaaatcaagtt
gi|16 : cggcgagattcatcgaggctgccgctaatttatttggactggtcacctcttccaaatctcagactggtcagtgtcacacaaagtgattcgggaaatcttgcctgaacttctgccgcttgttgcgaAGCCTAAATA-TTTT-GGAC-TTTGATCCGCCTTCAC--C--A-TCT---CAGAAC---CCAATGTTCACA-CAAACCGT-AT-TC-GGA-AA----T-G-CCT--TCAAACTTC---CG-TCGACC-CCGTTTTGAGTGCGATTA-
gi|17 : agccattccacatcaggtgaaatcaaa-CATTTT-A-TCG--CAACAAAGCGGC-GA-AGTCGAGGCAAGAT--C-CC-GAATCA---CTTTG-TG-TGACAA-CTG----GTCGGAGATTTT---GGAA-GAGACCT--------GA-------------C-CAGT-CAA----A---TT-----TA---GT--C---G----CG-----AC----T-C-TCTCGGAGA
gi|19 : ttagagTCT-AGA--------GTAGAAGGC----------GA-------------C-CAGTCCAAAT--A---TT-----TA---GC--C---T----CT-----AC-CAAT-C-TCACTGAGAt
gi|19 : -AAGGC----------GA-------------C-CAGTCCAAAT--A---TT-----T----GC--C---T----CT-----AC-CAAT-C-TCACTGAGAaggcgaccagtccaaatatttgcctctaccaatctcactgagattaa
gi|2 : tctcagtgagattggtagaggctaaatatttggactggtcgccttctactctagATCT-CAG-T---AGATG------GTAAAGGCTAAATA-TTT--GGAC-T--GGTCCGCCTTCAC--C--A-TCT---CAGA-----CCAAT--TCACAAC-AACCTT-AG-TC-GG---AAATTT-G-CCT--C--AACTTC---CG-TCG--CGCTGT------TGCGAT-A-AAATAACATTAA--ACTGAACATCTTGCCCGCTTCAAAA-TTTCAC-CTTAG-CATCC-------TA-TAACGTCCCC---TA-T---CAC-AATAAA-CCTTC------ATTTC--TAT-----------ACCT-----TTTC-------------------ATA-AGT-GTTAAA--TCC-------CATTTAA--------ATTCA-GGTT-GG--T-------------TATTTCACGTGCAT----TTT---C---A--ATGATTTGTGCTTT-CTCAAAC-ACTGAACGA-GTTCC-A------A----AT--------TGAT---ATATTC-G-------A----ATC---------------A---A-CTA----------GTCTT-AAGG-TAA--CA---AC-CTGT-TA-----T-TTTACTTTTAAGTGAC-CTT-ACTT--TCA-AAAGCATTAA-AAAAATCAT--GAAAAACAAATATTAAC-AATAGGAAACTAACGT-AATTTCAAAACAG------TCTATCTGAAAACAGTTTT-AAAACCGTTC-TG-TACCTCAACGACTAATTCCATAGTA-CAAAC---TATTCAA-------ATTTGAACTCTTCA-----------GC--ACGAA-AA---T-GGACG----T-GA-AAATAA-CG--ATACCTTGATTTAA-ATT---GGATTTAACAC------TATGAAAAA-GTAAAAA--GCAAGTT-TTA-T-GT--ACAGTGAGTTAG--TAGGA------GTCT--AAG-GT--AAAA--T-TTGAATCGTGC-A---ATGTTCAGTTTAAGT-T-CTTT-AATCGCCCAAC-A-GCGAC-GA-AGTTGAGGCAA-ATTTC-CC-GAATAA---GTTGG-T----AC-A-TT------TCTGAGA---T----GTG-AA-GC-----------A-------------C-CAGTCCAAAT--A---TT-----TA---GC--C---T----TT-----AC-C-AT-C-TCACTGAGttaa
gi|20 : aACAA-ACGGC-CACAATTCAGGCAAGATTTC-CC-AAATTA---CTTTG-TGATG-C-A-TTG----GTCCGAGATTCT---GAT--AAGGC----------AA---------------CAGTT--ACT--A---TT-----CA---GC--C---T----CG-----Attt
gi|21 : tctTGAGA---T---GGTA-AAGGCTAAATATTTGGACTGGTCGCCTTCAC-CAGTCCAAAT--A---TT-----TA---GC--C---TTTA-CGGCTTTAC-C-AT-C-TCACTGAGAaata
gi|21 : taa---T---GGTG-AAGGC----------GA-------------C-CAGTCCAAAT--A---TT-----TA---GC--C---T----TT-----AC-C-AT-C-TCACTGAGActgagatta
gi|22 : taatctcagtgagatggtaaagccgtaaaggctaaatatttggacCAAA---TT-TTT-CAT-CTTAGA-CATC--TATTAACTCCCTTATCGCTGATTA-AACTTGC--ATTTCTAT-ACCT---TTT---ACATAGACTCGTTAAA--TCC-----tta
gi|23 : ATCT-CAG-C-C-AGATTT-----GTCGAGGCTGGATA-TTT--GAAC-T--GACC--CCTCTaa
gi|24 : ctcagcaATCT-CAG-T-A-ACATTT-----GTCAAGGCTAAATA-TTT--GGAC-T--GGTT-GCtaatgcacgactaacaagatgtaa
gi|25 : gcaaacgactgtatttggactgtccaaaat---T---GGTG-AAGGC----------GA-------------C-CAGTCC-AAT--A---TT-----TA---GC--CT--T----TT-----AC-C-ATCC-TCACTGAGA
gi|26 : aATCT-CAG-T-G-AGATTC-----GTCGAGACTAAATA-TTT--GGAC-T--GATT-GTCTCTAA--TGAA-TCT---CAGAgatggatgaagcgacc
gi|27 : ctaATCT-CAT-T-G-AGATTC-----ATCGAGGCTAAATA-TTA--TGAC-T--GGAT-GCATCT
gi|28 : agtgta----------GA-------------C-CAGTCCAAAT--AAATTT-----TAC--GC--C---TTCTACGGCTTTAC-C-AT-C-TCACTGAGAtca
gi|29 : ATCT-CAG-TTG-AGATTCTTTTTGGCTCGGCTGGATA-TTT--AGAC-T--TGT--GCCTtta
gi|3 : ga-TTT--GGAC-T--GGTC-GCCTTCACCAC--A-TCTCCGCAGGAGGGGCTGATG--CACACC-ACCCTT-CT-TC-GGGCCCACTTT-GCCCT--C----CCTCACTCG-T-G--C-CTGT------TG-GATTACCCATACC-TTAACCCCTGAAAATCTTGCCCGCT-TCACATTTTCAC-CTTAGACAACTC--------CTAGC------------T---CAC-CCT--A-CATC---AATA-------CACCG-----------TTGCAAATTTCT-TAACC----TTTTCCAAAT--AGTGGTTCAC--TCCCACCACACATT--A--------C-TCACGGTT-GT--T-------------TATTTT-CACG-TCCATTTTCACAT---G--AT--T--GTGCTTT-CC---AC-ACTGGG-AACGTTAC-A------A----AT--------TGAT---A-GTTTGGG--TAAAACTAAATC---------------AATCA-CTA----------GTCTTAAAAG-T----CAGAAAC-CTGT-TA-----TCTCTACTTT--AGTGAC--TT-ACTTG-TCACAAAGCATT-T--AAAACTA---GAAAAACAAC-ATTAACAAATAGGAAACT-ACGTAAATTTC-AAATAG------TCTATCTGAAAACATTTTT-AA---CGTTC-TG-TACCTC-A-GACTAT-TCTGT--CA-CAAAC---TAGTC-A-------TTTGGAA--CATCA-----------GC--AC-AATAA---TCGGACG----T-GAGAAATAA-C-----A-C-TGATTTAA-ATT--GGGATTTTCTGTTAA---TAAGCAAAGAGTAAGAAATGCAAGTT-TTA-TTGT-GA-AGGGAGTTAG--TAGGAT--G-TGTACGGAAGAGTG-AACACTC-TTGAAGCGGGCGAAG-ATGTT-AGTTTCAGta
gi|30 : C--TATCAC-GATAA-AACTTGC--ATTTCT-T-ACCTAAATTT---ACAT--AGT-GTTAAA--TCC-----g
gi|31 : TACTTT-AAATGAC-TTTCACTTA-TCACAAAGCATT-T-CAAAAACGT--GAAAA
gi|32 : ATCT-CAGCT-G-AGATTC-----ATTGAGGATGAATA-TTT--GGAC-T--GA-C-GCCT
gi|33 : tATCT-CGG-TTG-AGATTCTCTTTGGCTTGGCTGGATA-TTT--GGAC-T--
gi|34 : -T-G-AGATTC-----AGCTCGGCTGGATA-TTT--GGAC-T--Gtg
gi|35 : tctaggtATCT-CGG-TTG-AGATTC-----AGCTCGGCTGGATA-TTT--GGTC-T--Gccgc
gi|36 : TCT-CAG-T-G-AGATTC-----GTCGAGGCT-AATATTTT--GGAC-T--GGt
gi|37 : ATCT-CGG-T-GGAGATTC-----GGCTCAGCTGGATG-TTT--GGAC-c
gi|38 : ATCT-CGG-TTG-AGATTC-----GGCTCGGCTGGATA-TTT--GGt
gi|39 : ATCT-CAGGT-G-AGATTC-----GGCTTGGCTGGATA-TTT--GGta
gi|4 : aATCT-CAT-G-G-AGATG------GTAAAAGCTAAATA-TTTTTGGACCT--GG-C-GCTTTTAC--C--A-TCT---CA-AA----CCAATG-TCACA----AC-TT-AT-TCCGGG-AAAATTT-C-CCT--C--AACTTC---CGGTCG--C--TGT------TGCGATTA-AAA---------------AATAACTT----------AAA-------ACT--GACATCTTTGC-----C--GCTTCAAA---TT-TTTCCAC-CTTAGA-CATCC-TACTAACTCCC-TGTCAC-AATAAGAATTTGC--ATTTCT-TTACC----TTT---TCATA--GT-GTTAAA--TCC-----AAT-TTTAA--------A-TCA-AGTTCG---T-------------TATTTT-CACG-TCCA--TTCAA-T---G--AT--TTTGTGCTTTTCTC-AACCACTGAA-GA-GTTTCCA------A----AT--------TGAT---A-GTTT-TG--T---ACT--ATC---------------A---AACTA----------GTCTT-AAGGAT-A--CAG--GC--TGT-TA-----TCTTTACTTTTCAATGAC-TTTTACTTTGTCACAAAGCATT-TTCAAAATCATTTGAAAAACAAA-ATTAACAAATAGAAAACT-ACGTAAATTTC-AAACAG------TCTATCTGAAAACATTTTTAAAAACCGTTCATGTTACCTCAA-GACTAA-TACATAGTACCAAAC---TA-TCAA-------
gi|40 : aCGAGGCTGGATA-TTT--GAAC-T--GA-C-GCCTCTTC--C--
gi|5 : cATCTACAG-T-G-AGATTC-----GTCGAGGCTACATA-TTT--TGAC-T--GGCC-GCCTCTTC--A--AATAT---CAGAA----CCAATG-TAACA-C-AACCTTTATAGC-GGG-AAATTTTTG-CCTTCC--ATCTTC---GG-CCG--C-TTGTC-----TGCGATTA-AA--GG--TAAA--ACTGAATATCTTGCCCGCTCTCAAA-TCTCACACTTAGACATCCCTGCGA-TACTAACTC----------------C-CT------ATCC-T------------------GATAA-AA-TTGC--A-TTCT-T-ACTAAA-TTT---ACAT--AGT-GTTAGAATTCC-----CACATTTAA-----------TA-GGTTCGA--TTCATATTCAAACCTATTGCAAATG-GC----TTC---C---GGAAT--TTCATGCTCT-CTC-AAC-ACTGAA-GA-GTTCCTA------ATAGTATATTTCA--TAAA---A-GTTT-G---T---ACT--AGCTTATTTAGTGGAGAAA---A-CTGT---------GTCTTGAATG-T-A--CA---ACACT-TCTAAGCGTCCTCAACCTTCAAATGACAACC-ACTGC-TCACAAAGCA
gi|6 : taATCTACAG-T-G-AGATTC-----GTCGAGGCTACATA-TTT--TGAC-T--GGCC-GCCTCTTC--A--AATAT---CAGAA----CCAATG-TAACA-C-AACCTTTATAGC-GGG-AAATTTTTG-CCTTCC--ATCTTC---GG-CCG--C-TTGTC-----TGCGATTA-AA--GG--TAAA--ACTGAATATCTTGCCCGCTCTCAAA-TCTCACACTTAGACATCCCTGCGA-TACTAACTC----------------C-CT------ATCC-T------------------GATAA-AA-TTGC--A-TTCT-T-ACTAAA-TTT---ACAT--AGT-GTTAGAATTCC-----CACATTTAA-----------TA-GGTTCGA--TTCATATTCAAACCTATTGCAAATG-GC----TTC---C---GGAAT--TTCATGCTCT-CTC-AAC-ACTGAA-GA-GTTCCAATAGTATA----TT--------TCATAAAA-GTTT-GTACT---ACT--AT
gi|7 : cactaa--T---ACT---TG---------------A---A-TTA----------GTCTT-GAAG-T-ATACAG--AC-CTGTCTA-----TCTCTACTTTTAAATGAC-TTT-ACTCA-TCACAAAGCATT-T-CAAAATCAT--GAAAATC--A-ATTGACAAATAGAAAACT-ACGTAAATTTC-AACCAGTCTGACTCTGTCTGAGGACAGTTTT--AGAC-------------------ACTAG----ATGGTA-CAAAC---TA-TCAA-------TTTGGAACTCTTCAGTGTTGAGAAAGC--AC-AA-AA---T-ATATT----T-G--AAAT-A-CA--A-G-TTTTATAGTA-ATA--GGGAGTTAt
gi|7 : acaGAAATACAAGTT-TTA-TAGT-AATAGGGAGTTAG--TAG-----GATGTCT--AAG-ATG-AAAA--T-TAGAAGTGAGC-AAG-A----------AATT-CACTTT-AATTG--CAAC-------T-GA-AGTACAGGCAAGATTTC-CCAAAATCA---CTATA-TG-gtaggatgtctaagatgaaaattagaagtgagcaagaaattcactttaattgcaactgaagtacaggcaagatttcccaaaatcactatatgac
gi|8 : acatacttgaattagtcttgaagtatacagacctgtctatctctacttttaaatgactttactcatcacaaagcatttcaaaatcatgaaaatcaattgacaaatagaaaactacgtaaatttcaaccagtctgactctgtctgaggacagttttagacactagatggtacaaactatcaatttggaactcttcagtgttgagaaagcacaaaatatattt---CAC-CTTAGA-CATCC-TACTAACTCCC-TATCGC-GATAA-AACTTGC--ATTTCT-T-ACC----TTT---ACATA-A-T-GTTAAA--TCC-----CACATTCAATAGGGTCGA-TCA-TTTTCAAACT-------------TATTGCAAATG-GC----TTC---CCGGA--AT--TTCATGCTCT-CTC-AAC-ACTGAA-GA-GTTCCAAT-----A----GTCTATTTCATAAT---A-GTAT-GTACT---ACT--ATT---------------T---A-GTAAGAAAACAGTGTCTG-AATG-T-A--CA---ACACTTTCTA-----AAGCGGCCTTCAAATGACAACC-ACTGC-TCACAAAGCACT-T-TAG---CAT--GAGATTTAAA-AACAATATAGAGAAAACT---GTCAAATTC-TAACAA------TCTATac
gi|9 : AAC---TA-TCAA-------TTTGGAACTCTTCAG-----------C--AC-AA-AA---T-G-ACG----TTGA-AAATAA-CG--A-A-CTTGATTTAA-ATT--GG-ATTTAACACT------ATGAAAAG-GTAAGAAATGCAA--T-TTACTGGTGGACAGGGAGTTAGTTTAG-----GATGTCT--AAG-GTGAAAAA--T-TTGAAGCGGGC-AGA-ATGTTCAGTTTAAGTGTATTTT--ATCG--TAACAG-GCGACGGA-AGTTGAGGCAATTTTTC-CC-GAATTAAGGATTGA-TG-TGAC-A-TTG----GTCCGAGAT--T---GGTA-AAGGC----------GA-------------C-CAGTCCAAAT--AT--TT-----TA---GC--C---T----TT------C-C-AT-C-TCAt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): CAATATTCTATCGTAAAGTTGCACACATTTAAATTATGTATGTACATGGATAGTGTCTGCAAAAATGACAACCACAGCTCACAAAGCACTTCAGCATGAAATTTAAAAACAATA
Alignments
lowQualScore : 111111 1111111 22222 111 1111 1 11111 111 222222 333333 888888888888888888888888888888888888888888888888888888888888888888 111 2222 11 11 111111 3333333333 7777777777777777777 44444444444444444444 11 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 1111 111 1 1 11111 11 1 11 111111 11 111 1 1111111 44444444444 111 1111 111 3333333 222222222 1 2222222 1111111111111111111111111 2222222222222222
lowQualScore : 4 4 8 2 111111 0 1 1 44 2 33 999 0000000 888 22222 5 0 444 1111 5 5 3 1 5 55555 1 000 5 77 77 777777 5 222222 3 99 0 7 0 888 9 0 0 777777777777777777777777777777777777777777777777777777777777777777 4 5 66 1 222 9999 777 77 8 22 111111 0 4444444444 5 1111111111111111111 1 55 55555555555555555555 77 0 4 5 00 5 5 5 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 1 5 1111 999 1 0 3 44444 0 7 55 0 00 9999 0 77 6 6 3 6 999999 0 88 4 2 6 6 3 6 9999 1 6 000 1 0 8888888 66666666666 77 5 5 000 666 2222 4 4 4 111 4 4 55 55 4444444 1 4 2 4 4 5 4 1 55 000000000 66 4 44 66 4 4 4 5 4 4 55 333 8 3 1 33 3 3 666 3 3 4 4 8888 7777777 555 8888888888888888888888888 2 33 666 66666 999 33 666 1111111111111111 2 2
lowQualScore : . . . . ...... . . . .. . .. ... ....... ... ..... . . ... .... . . . . . ..... . ... . .. .. ...... . ...... . .. . . . ... . . . .................................................................. . . .. . ... .... ... .. . .. ...... . .......... . ................... . .. .................... .. . . . .. . . . ....................................................................................... . . . .... ... . . . ..... . . .. . .. .... . .. . . . . ...... . .. . . . . . . .... . . ... . . ....... ........... .. . . ... ... .... . . . ... . . .. .. ....... . . . . . . . . .. ......... .. . .. .. . . . . . . .. ... . . . .. . . ... . . . . .... ....... ... ......................... . .. ... ..... ... .. ... ................ . .
lowQualScore : 7 4 9 2 222222 3 7 9 55 1 11 333 6666666 888 99999 7 7 333 7777 7 7 0 4 7 99999 9 000 7 99 44 999999 7 555555 7 22 3 0 2 888 0 8 8 444444444444444444444444444444444444444444444444444444444444444444 4 7 11 9 444 4444 888 22 9 22 888888 1 9999999999 7 4444444444444444444 3 77 77777777777777777777 99 4 0 7 00 7 7 7 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 4 7 7 6666 333 4 7 7 33333 7 0 55 0 99 1111 3 99 7 7 2 7 222222 6 66 2 5 7 7 2 7 3333 7 7 000 4 1 6666666 77777777777 99 7 7 000 999 1111 4 4 4 999 0 0 22 55 6666666 0 4 5 0 0 2 0 9 55 111111111 11 4 66 11 4 4 4 1 4 4 55 888 2 6 4 00 6 6 444 6 6 0 0 5555 0000000 666 8888888888888888888888888 5 44 999 22222 444 44 999 6666666666666666 7 7
consensus : ATCT-CAG-T-G-AGATTC-----GTCGAGGCTGGATA-TTT--GGAC-T--GGTC-GCCTCTAC--C--A-TCT---CAGAA----CCAATG-TCACA-C-AACCTT-AT-TC-GGG-AAANTTT-G-CCT--C--AACTTC---CG-TCG--C-CTGT------TGCGATTA-AAATGGC-TTAA--ACTGAATATCTTGCCCGCTCTCAAA-TCTCACACTTAGACATCCCTGCGA-TACTAACTTCAAA---TT-T---CAC-CTTAGA-CATCC-TACTAACTCC--TATCGC-GATAA-AACTTGC--ATTTCT-T-ACC----TTT---ACATA-AGT-GTTAAA--TCC-----CACATTTAA--------A-TCA-GGTTCGA--T-------------TATTTCACACG-GC----TTC---C---G--AT--TTCGTGCTCT-CTC-AAC-ACTGAA-GA-GTTCCAA------A----AT--------TGAT---A-GTTT-GT--T---ACT--ATC---------------A---A-CTA----------GTCTT-AAGG-T-A--CAG--AC-CTGTCTA-----TCTCTACTTTTAAATGAC-TTT-ACTTN-TCACAAAGCATT-T-CAAAATCAT--GAAAAACAAA-ATTAACAAATAGAAAACT-ACGTAAATTTC-AAACAG------TCTATCTGAAAACATTTTT-AAAACCGTTC-TG-TACCTCAA-GACTAA-TCCATAGTA-CAAAC---TA-TCAA-------TTTGGAACTCTTCAG----------GC--AC-AA-AA---T-GGACG----T-GA-AAATAA-CG--A-A-CTTGATTTAA-ATT--GGGATTTAACACT-----TATGNAAAG-GTAAGAAATGCAAGTT-TTA-TAGT-GATAGGGAGTTAG--TAGGAT--GATGTCT--AAG-GTG-AAAA--T-TTGAAGCGGGC-AAG-ATGTTCAGTTTAAGT-CATTTT-AATCG--CAACAA-GCGGC-GA-AGTTGAGGCAAGATTTC-CC-GAATCA---CTTTG-TG-TGAC-A-TTG----GTCTGAGA---T---GGTA-AAGGC----------GA-------------C-CAGTCCAAAT--A---TT-----TA---GC--C---T----CG-----AC-C-AT-C-TCACTGAGAA
Reference ( family-605 ) : ATCT-CAG-T-G-AGATTC-----GTCGAGGCTGGATA-TTT--GGAC-T--GGTC-GCCTCTAC--C--A-TCT---CAGAA----CCAATG-TCACA-C-AACCTT-AT-TC-GGG-AAANTTT-G-CCT--C--AACTTC---CG-TCG--C-CTGT------TGCGATTA-AAATGGC-TTAA--ACTGAATATCTTGCCCGCTCTCAAA-TCTCACACTTAGACATCCCTGCGA-TACTAACTTCAAA---TT-T---CAC-CTTAGA-CATCC-TACTAACTCC--TATCGC-GATAA-AACTTGC--ATTTCT-T-ACC----TTT---ACATA-AGT-GTTAAA--TCC-----CACATTTAA--------A-TCA-GGTTCGA--T-------------TATTTCACACG-GC----TTC---C---G--AT--TTCGTGCTCT-CTC-AAC-ACTGAA-GA-GTTCCAA------A----AT--------TGAT---A-GTTT-GT--T---ACT--ATC---------------A---A-CTA----------GTCTT-AAGG-T-A--CAG--AC-CTGTCTA-----TCTCTACTTTTAAATGAC-TTT-ACTTN-TCACAAAGCATT-T-CAAAATCAT--GAAAAACAAA-ATTAACAAATAGAAAACT-ACGTAAATTTC-AAACAG------TCTATCTGAAAACATTTTT-AAAACCGTTC-TG-TACCTCAA-GACTAA-TCCATAGTA-CAAAC---TA-TCAA-------TTTGGAACTCTTCAG----------GC--AC-AA-AA---T-GGACG----T-GA-AAATAA-CG--A-A-CTTGATTTAA-ATT--GGGATTTAACACT-----TATGNAAAG-GTAAGAAATGCAAGTT-TTA-TAGT-GATAGGGAGTTAG--TAGGAT--GATGTCT--AAG-GTG-AAAA--T-TTGAAGCGGGC-AAG-ATGTTCAGTTTAAGT-CATTTT-AATCG--CAACAA-GCGGC-GA-AGTTGAGGCAAGATTTC-CC-GAATCA---CTTTG-TG-TGAC-A-TTG----GTCTGAGA---T---GGTA-AAGGC----------GA-------------C-CAGTCCAAAT--A---TT-----TA---GC--C---T----CG-----AC-C-AT-C-TCACTGAGAA
gi|1 : ATCT-CAG-T-G-AGATG------GTAGAGGCTAAATA-TTT--GGAC-T--GGTC-GCCTTTAC--C--A-TCT---CAGA-----CCAATG-TAACA-C-AACCTT-AT-TC-GGG-AAAATTT-G-CCT--C--AACTTC---CG-TCG--C-CTGT------TGCGATTA-AAATGGC-TTAA--ACTGAACATCCTGTCGNNNNNNNNN-NNNNNNNNNNNNNNNNACGAACGGGTA-TAACTTCAAAAATTTAT---CACACTTGGAATATCCATACTAACTCC--TATCAC-AATAA-AACTTGC--ATTTCT---ACC----TTT---CTATA-AGT-GTTAAA--TCC-----CA-ATTTAA--------A-TCA-AGTT-GG--T-------------TATTTCACACG--------TC---C------AT--TTTGTGCT-T-CT--AAC-ACTGAA-GA-GTTCCAA------A----AT--------TGAT---A-GCTT-GT--T---ACT--GTC---------------A---A-CTA----------GTCTT-AAGG-T-A--CAG--AC-CTGTTTA-----TCGTTACTTTTAAATGAC-TTT-ACTTG-TCACAAAGCATT-T-CAAAATCAT--GAAAAACAAA-ATTAACAAATAGAAAACT-ACGTAAATTTC-AAACAG------TCTATCTGAAAACATTTTT--AAACCGTTC-TG-TACCTCAA-GACTAA-TCCATAGTA-CAAAC---TA-TCAA-------TTTGGAACTCTTCA-----------GC--AC-AA-AA---T-GGACG----T-GA-AAATAA-CG--A-A-CTTGATTTAA-ATT--GGGATTTAACACTTATTCTATGAAAAG-GTAAGAAATGCAAGTT-TTA-TTGT-GATCGGGAGTTAG--TAGGATCCGATGTCT--AAG-GTG-AAAA--T-TTGAAGCGGGC-AAG-ATGTTCAGTTTAGGT-TATTTT-AATTG--CAACAG-GCGGCGGG-AGTTGAGGTAAATTTTC-CC-GAATAA---GGTTG-TG-TTGC-A-TTG----GTCTGAGA---T---GGTA-AAGGC----------GA-------------C-CAGTCCAAAT--A---TT-----TA---GC--C---T----CT-----AC-C-AT-C-TCACTGAGAA
gi|10 : AA----------GC--AC-AA-AC---T-ATATG----T-GA-AAATAA-CC--A-A-CTTGATTTAA-TTT--GGGACTGAACACT------ACATAAAG-ATAAGAAATGCAA-TT-TTA-TAGT-GATAAGGAGTTAG--TAAGAT--G---TCT--AAG-GTG-AAAA--T-CTGAAGCAGGC-AAG-AAATTCAGTTTCAGC-CATTTT-AATCG--CAACAA-GTGGCAGA-AGTTGAGGCAAGATTTC-CC-AAATCA---CTTTA-TG-TGAC-A-CTG----GTCTGAGA---TTC-AG-A-GAGGT----------GA-------------C-CAGTCCAAAT--A---AT-----GA---GC--CTTGT----CG-----A----AT-C-TCACTGAGAt
gi|11 : cttcagtgttgaga-GA-AAATAAACC--A-A-CTTG-TTTAA-ATTTTGGGATTTAACACT------ATGCAAAG-GTAAGAAATGCAAGTTCTTA-TTGC-GACATGGTGTTAG--TAGGAT--GAT-TCT--AAG-GTG-TAAA--T-TTGAATC-GGC-AAGAATGTTCAGTTTAAGC-CATTTTAAATCG--CAACAA-GCGGC-CA-AGTTGAGGCAA-ATTTCACC-GAATAA---GTAGT-TG-TGAC-ATTTG----GTC-GAGAT--T---CGTA-GAGAC----------GG-------------CTCAGTCCAAAT--A---TT-----TACTCGCTTC---T----CG-----ACGA-AT-C-TCGCTGAAAA
gi|12 : -GA-AAATAA-CACTA-A-CTTGATTTA---CT--GTCATATAACATG-----TATGTAATG-GTAAGCCATGCAAGTT-CCA-TAAT-GAAAGGGATTTAA--CAAGGT--G---TCT--AAG--TC-AAAA--TGTTGAAGTGTGC-AAG-AAACTCAGACTAAGC-CATTTA-AATTT--TAACAA-GTGGCCAA-AGTTCAGACAAG-TTTC-CC-AAATCA---CTTTGAGG-TGAC-A-TCG----GTTTAAGA---TTCAGAT--GAGGC-----------A-------------T-CAACCCACAA--A---TC-----CA---AT--C---T----TG-----ACAA-AT-C-TCATCGAGA
gi|13 : AGACAGTTT-TG-TACCTCAA-GGCCAA-TGGATAGTA-CAAACTAATA-TGGAGTAGATTTTTGGAACTCTTCAAT---------GTTGAG-AA-AATATT-GAATATGTTT-GA-AAATAA-CA--A-T-CTTGATTTACTTTT--GGGATTTAACAC------TATGTAAAG-GTAAGAAATTCTAGAT-TTA-TAAT-CATAGGGAcaac
gi|14 : tATAGTGAGTTAG--TAG------ACGCTT--AAG-ATA-AAGA--T-TAGAAGCGGGC-AGA-AAATTCAGTTTAAGT-CATGTT-AATCG--CAA----------------TCAGGCAAGATTTC-CC-GAATCA---CTTTG-TG-CGAG-A-CTG----GTCTGAGA---TTC-GG-A-AGAGC----------GC-------------C-AAGACC-AAT--A---TT-----CAG--GC--C---T----CG-----AC-G-AA-CTTCGCTGActaaggtaaatcaaagtccttaaagttctgaaacgag
gi|15 : taataTCG--CAACAA-GCGGCAGA-AGTTCAGGCAAGATTTC-CC-GAATCA---CTTTG-TG-TGAC-A-CTGACCAGTCTGAGATT-T---GGAA-GAGGT----------GA-------------C-CAGTCCAAATAAA---TTAGCGGCA---GC--C---T----CG-----ATGA-AT-C-TCGCCGgcaaaccgtcttctacaaatac
gi|15 : --A-A-CTTGATTTAA-TTT--GAGATTTAACAC------TATGTAAAG-GTAAGAAA----------TA-TAGT-GATGGGGGGTTAG--TAGGAT--Gcatcctactaaccccccatcactatatttcttacctttacatagtgttaaatctcaaattaaatcaagtt
gi|16 : cggcgagattcatcgaggctgccgctaatttatttggactggtcacctcttccaaatctcagactggtcagtgtcacacaaagtgattcgggaaatcttgcctgaacttctgccgcttgttgcgaAGCCTAAATA-TTTT-GGAC-TTTGATCCGCCTTCAC--C--A-TCT---CAGAAC---CCAATGTTCACA-CAAACCGT-AT-TC-GGA-AA----T-G-CCT--TCAAACTTC---CG-TCGACC-CCGTTTTGAGTGCGATTA-
gi|17 : agccattccacatcaggtgaaatcaaa-CATTTT-A-TCG--CAACAAAGCGGC-GA-AGTCGAGGCAAGAT--C-CC-GAATCA---CTTTG-TG-TGACAA-CTG----GTCGGAGATTTT---GGAA-GAGACCT--------GA-------------C-CAGT-CAA----A---TT-----TA---GT--C---G----CG-----AC----T-C-TCTCGGAGA
gi|19 : ttagagTCT-AGA--------GTAGAAGGC----------GA-------------C-CAGTCCAAAT--A---TT-----TA---GC--C---T----CT-----AC-CAAT-C-TCACTGAGAt
gi|19 : -AAGGC----------GA-------------C-CAGTCCAAAT--A---TT-----T----GC--C---T----CT-----AC-CAAT-C-TCACTGAGAaggcgaccagtccaaatatttgcctctaccaatctcactgagattaa
gi|2 : tctcagtgagattggtagaggctaaatatttggactggtcgccttctactctagATCT-CAG-T---AGATG------GTAAAGGCTAAATA-TTT--GGAC-T--GGTCCGCCTTCAC--C--A-TCT---CAGA-----CCAAT--TCACAAC-AACCTT-AG-TC-GG---AAATTT-G-CCT--C--AACTTC---CG-TCG--CGCTGT------TGCGAT-A-AAATAACATTAA--ACTGAACATCTTGCCCGCTTCAAAA-TTTCAC-CTTAG-CATCC-------TA-TAACGTCCCC---TA-T---CAC-AATAAA-CCTTC------ATTTC--TAT-----------ACCT-----TTTC-------------------ATA-AGT-GTTAAA--TCC-------CATTTAA--------ATTCA-GGTT-GG--T-------------TATTTCACGTGCAT----TTT---C---A--ATGATTTGTGCTTT-CTCAAAC-ACTGAACGA-GTTCC-A------A----AT--------TGAT---ATATTC-G-------A----ATC---------------A---A-CTA----------GTCTT-AAGG-TAA--CA---AC-CTGT-TA-----T-TTTACTTTTAAGTGAC-CTT-ACTT--TCA-AAAGCATTAA-AAAAATCAT--GAAAAACAAATATTAAC-AATAGGAAACTAACGT-AATTTCAAAACAG------TCTATCTGAAAACAGTTTT-AAAACCGTTC-TG-TACCTCAACGACTAATTCCATAGTA-CAAAC---TATTCAA-------ATTTGAACTCTTCA-----------GC--ACGAA-AA---T-GGACG----T-GA-AAATAA-CG--ATACCTTGATTTAA-ATT---GGATTTAACAC------TATGAAAAA-GTAAAAA--GCAAGTT-TTA-T-GT--ACAGTGAGTTAG--TAGGA------GTCT--AAG-GT--AAAA--T-TTGAATCGTGC-A---ATGTTCAGTTTAAGT-T-CTTT-AATCGCCCAAC-A-GCGAC-GA-AGTTGAGGCAA-ATTTC-CC-GAATAA---GTTGG-T----AC-A-TT------TCTGAGA---T----GTG-AA-GC-----------A-------------C-CAGTCCAAAT--A---TT-----TA---GC--C---T----TT-----AC-C-AT-C-TCACTGAGttaa
gi|20 : aACAA-ACGGC-CACAATTCAGGCAAGATTTC-CC-AAATTA---CTTTG-TGATG-C-A-TTG----GTCCGAGATTCT---GAT--AAGGC----------AA---------------CAGTT--ACT--A---TT-----CA---GC--C---T----CG-----Attt
gi|21 : tctTGAGA---T---GGTA-AAGGCTAAATATTTGGACTGGTCGCCTTCAC-CAGTCCAAAT--A---TT-----TA---GC--C---TTTA-CGGCTTTAC-C-AT-C-TCACTGAGAaata
gi|21 : taa---T---GGTG-AAGGC----------GA-------------C-CAGTCCAAAT--A---TT-----TA---GC--C---T----TT-----AC-C-AT-C-TCACTGAGActgagatta
gi|22 : taatctcagtgagatggtaaagccgtaaaggctaaatatttggacCAAA---TT-TTT-CAT-CTTAGA-CATC--TATTAACTCCCTTATCGCTGATTA-AACTTGC--ATTTCTAT-ACCT---TTT---ACATAGACTCGTTAAA--TCC-----tta
gi|23 : ATCT-CAG-C-C-AGATTT-----GTCGAGGCTGGATA-TTT--GAAC-T--GACC--CCTCTaa
gi|24 : ctcagcaATCT-CAG-T-A-ACATTT-----GTCAAGGCTAAATA-TTT--GGAC-T--GGTT-GCtaatgcacgactaacaagatgtaa
gi|25 : gcaaacgactgtatttggactgtccaaaat---T---GGTG-AAGGC----------GA-------------C-CAGTCC-AAT--A---TT-----TA---GC--CT--T----TT-----AC-C-ATCC-TCACTGAGA
gi|26 : aATCT-CAG-T-G-AGATTC-----GTCGAGACTAAATA-TTT--GGAC-T--GATT-GTCTCTAA--TGAA-TCT---CAGAgatggatgaagcgacc
gi|27 : ctaATCT-CAT-T-G-AGATTC-----ATCGAGGCTAAATA-TTA--TGAC-T--GGAT-GCATCT
gi|28 : agtgta----------GA-------------C-CAGTCCAAAT--AAATTT-----TAC--GC--C---TTCTACGGCTTTAC-C-AT-C-TCACTGAGAtca
gi|29 : ATCT-CAG-TTG-AGATTCTTTTTGGCTCGGCTGGATA-TTT--AGAC-T--TGT--GCCTtta
gi|3 : ga-TTT--GGAC-T--GGTC-GCCTTCACCAC--A-TCTCCGCAGGAGGGGCTGATG--CACACC-ACCCTT-CT-TC-GGGCCCACTTT-GCCCT--C----CCTCACTCG-T-G--C-CTGT------TG-GATTACCCATACC-TTAACCCCTGAAAATCTTGCCCGCT-TCACATTTTCAC-CTTAGACAACTC--------CTAGC------------T---CAC-CCT--A-CATC---AATA-------CACCG-----------TTGCAAATTTCT-TAACC----TTTTCCAAAT--AGTGGTTCAC--TCCCACCACACATT--A--------C-TCACGGTT-GT--T-------------TATTTT-CACG-TCCATTTTCACAT---G--AT--T--GTGCTTT-CC---AC-ACTGGG-AACGTTAC-A------A----AT--------TGAT---A-GTTTGGG--TAAAACTAAATC---------------AATCA-CTA----------GTCTTAAAAG-T----CAGAAAC-CTGT-TA-----TCTCTACTTT--AGTGAC--TT-ACTTG-TCACAAAGCATT-T--AAAACTA---GAAAAACAAC-ATTAACAAATAGGAAACT-ACGTAAATTTC-AAATAG------TCTATCTGAAAACATTTTT-AA---CGTTC-TG-TACCTC-A-GACTAT-TCTGT--CA-CAAAC---TAGTC-A-------TTTGGAA--CATCA-----------GC--AC-AATAA---TCGGACG----T-GAGAAATAA-C-----A-C-TGATTTAA-ATT--GGGATTTTCTGTTAA---TAAGCAAAGAGTAAGAAATGCAAGTT-TTA-TTGT-GA-AGGGAGTTAG--TAGGAT--G-TGTACGGAAGAGTG-AACACTC-TTGAAGCGGGCGAAG-ATGTT-AGTTTCAGta
gi|30 : C--TATCAC-GATAA-AACTTGC--ATTTCT-T-ACCTAAATTT---ACAT--AGT-GTTAAA--TCC-----g
gi|31 : TACTTT-AAATGAC-TTTCACTTA-TCACAAAGCATT-T-CAAAAACGT--GAAAA
gi|32 : ATCT-CAGCT-G-AGATTC-----ATTGAGGATGAATA-TTT--GGAC-T--GA-C-GCCT
gi|33 : tATCT-CGG-TTG-AGATTCTCTTTGGCTTGGCTGGATA-TTT--GGAC-T--
gi|34 : -T-G-AGATTC-----AGCTCGGCTGGATA-TTT--GGAC-T--Gtg
gi|35 : tctaggtATCT-CGG-TTG-AGATTC-----AGCTCGGCTGGATA-TTT--GGTC-T--Gccgc
gi|36 : TCT-CAG-T-G-AGATTC-----GTCGAGGCT-AATATTTT--GGAC-T--GGt
gi|37 : ATCT-CGG-T-GGAGATTC-----GGCTCAGCTGGATG-TTT--GGAC-c
gi|38 : ATCT-CGG-TTG-AGATTC-----GGCTCGGCTGGATA-TTT--GGt
gi|39 : ATCT-CAGGT-G-AGATTC-----GGCTTGGCTGGATA-TTT--GGta
gi|4 : aATCT-CAT-G-G-AGATG------GTAAAAGCTAAATA-TTTTTGGACCT--GG-C-GCTTTTAC--C--A-TCT---CA-AA----CCAATG-TCACA----AC-TT-AT-TCCGGG-AAAATTT-C-CCT--C--AACTTC---CGGTCG--C--TGT------TGCGATTA-AAA---------------AATAACTT----------AAA-------ACT--GACATCTTTGC-----C--GCTTCAAA---TT-TTTCCAC-CTTAGA-CATCC-TACTAACTCCC-TGTCAC-AATAAGAATTTGC--ATTTCT-TTACC----TTT---TCATA--GT-GTTAAA--TCC-----AAT-TTTAA--------A-TCA-AGTTCG---T-------------TATTTT-CACG-TCCA--TTCAA-T---G--AT--TTTGTGCTTTTCTC-AACCACTGAA-GA-GTTTCCA------A----AT--------TGAT---A-GTTT-TG--T---ACT--ATC---------------A---AACTA----------GTCTT-AAGGAT-A--CAG--GC--TGT-TA-----TCTTTACTTTTCAATGAC-TTTTACTTTGTCACAAAGCATT-TTCAAAATCATTTGAAAAACAAA-ATTAACAAATAGAAAACT-ACGTAAATTTC-AAACAG------TCTATCTGAAAACATTTTTAAAAACCGTTCATGTTACCTCAA-GACTAA-TACATAGTACCAAAC---TA-TCAA-------
gi|40 : aCGAGGCTGGATA-TTT--GAAC-T--GA-C-GCCTCTTC--C--
gi|5 : cATCTACAG-T-G-AGATTC-----GTCGAGGCTACATA-TTT--TGAC-T--GGCC-GCCTCTTC--A--AATAT---CAGAA----CCAATG-TAACA-C-AACCTTTATAGC-GGG-AAATTTTTG-CCTTCC--ATCTTC---GG-CCG--C-TTGTC-----TGCGATTA-AA--GG--TAAA--ACTGAATATCTTGCCCGCTCTCAAA-TCTCACACTTAGACATCCCTGCGA-TACTAACTC----------------C-CT------ATCC-T------------------GATAA-AA-TTGC--A-TTCT-T-ACTAAA-TTT---ACAT--AGT-GTTAGAATTCC-----CACATTTAA-----------TA-GGTTCGA--TTCATATTCAAACCTATTGCAAATG-GC----TTC---C---GGAAT--TTCATGCTCT-CTC-AAC-ACTGAA-GA-GTTCCTA------ATAGTATATTTCA--TAAA---A-GTTT-G---T---ACT--AGCTTATTTAGTGGAGAAA---A-CTGT---------GTCTTGAATG-T-A--CA---ACACT-TCTAAGCGTCCTCAACCTTCAAATGACAACC-ACTGC-TCACAAAGCA
gi|6 : taATCTACAG-T-G-AGATTC-----GTCGAGGCTACATA-TTT--TGAC-T--GGCC-GCCTCTTC--A--AATAT---CAGAA----CCAATG-TAACA-C-AACCTTTATAGC-GGG-AAATTTTTG-CCTTCC--ATCTTC---GG-CCG--C-TTGTC-----TGCGATTA-AA--GG--TAAA--ACTGAATATCTTGCCCGCTCTCAAA-TCTCACACTTAGACATCCCTGCGA-TACTAACTC----------------C-CT------ATCC-T------------------GATAA-AA-TTGC--A-TTCT-T-ACTAAA-TTT---ACAT--AGT-GTTAGAATTCC-----CACATTTAA-----------TA-GGTTCGA--TTCATATTCAAACCTATTGCAAATG-GC----TTC---C---GGAAT--TTCATGCTCT-CTC-AAC-ACTGAA-GA-GTTCCAATAGTATA----TT--------TCATAAAA-GTTT-GTACT---ACT--AT
gi|7 : cactaa--T---ACT---TG---------------A---A-TTA----------GTCTT-GAAG-T-ATACAG--AC-CTGTCTA-----TCTCTACTTTTAAATGAC-TTT-ACTCA-TCACAAAGCATT-T-CAAAATCAT--GAAAATC--A-ATTGACAAATAGAAAACT-ACGTAAATTTC-AACCAGTCTGACTCTGTCTGAGGACAGTTTT--AGAC-------------------ACTAG----ATGGTA-CAAAC---TA-TCAA-------TTTGGAACTCTTCAGTGTTGAGAAAGC--AC-AA-AA---T-ATATT----T-G--AAAT-A-CA--A-G-TTTTATAGTA-ATA--GGGAGTTAt
gi|7 : acaGAAATACAAGTT-TTA-TAGT-AATAGGGAGTTAG--TAG-----GATGTCT--AAG-ATG-AAAA--T-TAGAAGTGAGC-AAG-A----------AATT-CACTTT-AATTG--CAAC-------T-GA-AGTACAGGCAAGATTTC-CCAAAATCA---CTATA-TG-gtaggatgtctaagatgaaaattagaagtgagcaagaaattcactttaattgcaactgaagtacaggcaagatttcccaaaatcactatatgac
gi|8 : acatacttgaattagtcttgaagtatacagacctgtctatctctacttttaaatgactttactcatcacaaagcatttcaaaatcatgaaaatcaattgacaaatagaaaactacgtaaatttcaaccagtctgactctgtctgaggacagttttagacactagatggtacaaactatcaatttggaactcttcagtgttgagaaagcacaaaatatattt---CAC-CTTAGA-CATCC-TACTAACTCCC-TATCGC-GATAA-AACTTGC--ATTTCT-T-ACC----TTT---ACATA-A-T-GTTAAA--TCC-----CACATTCAATAGGGTCGA-TCA-TTTTCAAACT-------------TATTGCAAATG-GC----TTC---CCGGA--AT--TTCATGCTCT-CTC-AAC-ACTGAA-GA-GTTCCAAT-----A----GTCTATTTCATAAT---A-GTAT-GTACT---ACT--ATT---------------T---A-GTAAGAAAACAGTGTCTG-AATG-T-A--CA---ACACTTTCTA-----AAGCGGCCTTCAAATGACAACC-ACTGC-TCACAAAGCACT-T-TAG---CAT--GAGATTTAAA-AACAATATAGAGAAAACT---GTCAAATTC-TAACAA------TCTATac
gi|9 : AAC---TA-TCAA-------TTTGGAACTCTTCAG-----------C--AC-AA-AA---T-G-ACG----TTGA-AAATAA-CG--A-A-CTTGATTTAA-ATT--GG-ATTTAACACT------ATGAAAAG-GTAAGAAATGCAA--T-TTACTGGTGGACAGGGAGTTAGTTTAG-----GATGTCT--AAG-GTGAAAAA--T-TTGAAGCGGGC-AGA-ATGTTCAGTTTAAGTGTATTTT--ATCG--TAACAG-GCGACGGA-AGTTGAGGCAATTTTTC-CC-GAATTAAGGATTGA-TG-TGAC-A-TTG----GTCCGAGAT--T---GGTA-AAGGC----------GA-------------C-CAGTCCAAAT--AT--TT-----TA---GC--C---T----TT------C-C-AT-C-TCAt
blockSeqs : A C T G CTTTTT A T TT C TT TCC TGAA CCG AGGGG T CA TATA C C A T C TCA A ACT G AC GC TTTGAG C ATAACA T CC T TTT A TTGCCGCTTCAAATTTTTCCACCTTAGACATCCTACTAACTCCCTGTCAC G C AA T AT TAAA TCC AG C AT CACCAC TAGGGTCGA C CGATTCATATTCAAACC T AC TCCATTTTCACATG GA T T CA C C C TAATAGTATATTTCATAAAAGTTTGTACTAGCTTATTTAGTGGAGAAAACTGT A G A ATA GAA A C AGCGT T AA C TG AAA TT T A A A TCTGAC AA G A A T A C TTCC A C TAA T GTAGATT GTGTTGAGAAA TG G T TAT CGG TGTT T G A ACT T C TT TT TAAT T A G C C A G T TT GATGAT GG A GA CT G G A A G A CC AAA A C G GA A A AGG A A A T ACCA TTCA TAG TAAATATTTGGACTGGTCGCCTTCA T AA AAT AGCGG CTC TT TTG TCTACGGCTTTACC C T
blockSeqs : A G T . CTCTTT G . T . . TCC CACA . AC . AC TATA . . C T . TCC A . . . C C . ATACC T . C TT A TATAACGTCCCCTATCACAATAAACCTTCATTTCTAT . C . T TA AAA . A G AT A AT . CGATTCATATTCAAACC T AA TCCATTCAATG . T . C . . . AATAGTCTATTTCATAATAGTATGTACTACTATTTAGTAAGAAAACAGT G A . AA G A C . T AA T G TTC . . . A . . A A C . . A . TGG A . . G . AT . . . . AT . . . . C . . T . GT C . G . . T . C . GATGTG . . G . . . . T . . . AA C . G GA . . . . . . . . TTTT TA CTGA . . T . G . T TTACGGCTTTACC . .
blockSeqs : . . T . T A . . . . CC AAA . A . CC AT . . A . . TCC A . . . C C . GG A . C TC A CCTAGCTCACCCTACATCAATACACCG . C . T TT AAA . A . . C C . CAAACT T AA GCTTCCCGGA . T . C . . . AAATTGATAGTTTGGGTAAAACTAAATCAATCACTA . G . A G . C . C C . A TC . . . A . . A A C . . A . TCT A . . . . A . . . . GA . . . . C . . A . T T . G . . A . A . GATG . . G . . . . A . . . AA A . C GA . . . . . . . . TTCT AA GA . . . . C . . CGACGA . .
blockSeqs : . . T . T G . . . . TT AAA . A . C AG . . T . . C T . . . T . . GG A . . TC . CTGCGATACTAACTCCCTATCCT . T . T T T . A . . C A . GGT G AA GCTTCCGGA . C . C . . . CAAATTGATAGTTTTGTACTATCAAACTA . T . A . . . . T T . C TC . . . C . . . G C . . . . TAC G . . . . G . . . . GG . . . . A . . T . T T . G . . A . T . GGTG . . C . . . . A . . . AA G . C GA . . . . . . . . TTC AA GG . . . . . . . TGACAA . .
blockSeqs : . . . . C G . . . . TT CA . A . C CT . . T . . C T . . . T . . A . . . . . CTGCGATACTAACTCCCTATCCT . C . T T . . . . . C . . GTT G C GCTTCCGGA . C . C . . . AAATTGATATATTCGAATCAACTA . A . A . . . . C T . A TT . . . . . . . . . . . . . . . . . . . . . . . AT . . . . G . . A . T T . G . . A . T . GATG . . A . . . . T . . . AA . . C GA . . . . . . . . TTC TG GC . . . . . . . CGATGA . .
blockSeqs : . . . . C T . . . . AT CA . . . . AT . . . . . C . . . . . . . . . . T T . . . . . . . . CGT G C CATTTTCA . C . . . . . . T . . . . . . . T . C T . . . . . . . . . G . . . . A . . A . T A . G . . T . T . GATG . . G . . . . T . . . AA . . G GA . . . . . . . . TTT TA GA . . . . . . . CTACCA . .
blockSeqs : . . . . C G . . . . TC CA . . . . . T . . . . . . . . . . . . G . . A . T C . . . . A . C . ACG . . G . . . . T . . . AG . . G TT . . . . . . . . TT TG GA . . . . . . . CTACCA . .
blockSeqs : . . . . C T . . . . CC . . . . . . . . . . . . . . . . A . T A . . . . G . T . GAG . . . . . . . . . . . A . . C A . . . . . . . . TT TG GA . . . . . . . CGACG . .
blockSeqs : . . . . C T . . . . CC . . . . . . . . . C . . . . . C G . . . . . . . . T TA AA . . . . . . . TTACC . .
blockSeqs : . . . . C T . . . . T . . . . G A . . . . . T A GA . . . . . . . TTACC . .
blockSeqs : . . . . C G . . . . C T T GA . . . . . . . TTACC . .
blockSeqs : . . . . C T . . . . C T A GA . . . . . . . CGAC . .
blockSeqs : . . . . C T . . . . C . T GA . . . . . . . TTCC . .
blockSeqs : . . . . C T . . . . A . . . . . . . CGA . .
blockSeqs : . . . . C A . . . . A . . . . . . .
blockSeqs : . . . . . G . . . .
blockSeqs : . . . . G . . . .
blockSeqs : G . . .
blockSeqs : . .
blockSeqs : . .
blockSeqCons : C***** A**** C** GG**** T** A* NCCATTCCGNA********* C* G** A* T****** GATG***** CGACC***********
originalCons : ATCT-CAG-T-G-AGATTC-----GTCGAGGCTGGATA-TTT--GGAC-T--GGTC-GCCTCTAC--C--A-TCT---CAGAA----CCAATG-TCACA-C-AACCTT-AT-TC-GGG-AAANTTT-G-CCT--C--AACTTC---CG-TCG--C-CTGT------TGCGATTA-AAATGGC-TTAA--ACTGAATATCTTGCCCGCTCTCAAA-TCTCACACTTAGACATCCCTGCGA-TACTAACTTCAAA---TT-T---CAC-CTTAGA-CATCC-TACTAACTCC--TATCGC-GATAA-AACTTGC--ATTTCT-T-ACC----TTT---ACATA-AGT-GTTAAA--TCC-----CACATTTAA--------A-TCA-GGTTCGA--T-------------TATTTCACACG-GC----TTC---C---G--AT--TTCGTGCTCT-CTC-AAC-ACTGAA-GA-GTTCCAA------A----AT--------TGAT---A-GTTT-GT--T---ACT--ATC---------------A---A-CTA----------GTCTT-AAGG-T-A--CAG--AC-CTGTCTA-----TCTCTACTTTTAAATGAC-TTT-ACTTN-TCACAAAGCATT-T-CAAAATCAT--GAAAAACAAA-ATTAACAAATAGAAAACT-ACGTAAATTTC-AAACAG------TCTATCTGAAAACATTTTT-AAAACCGTTC-TG-TACCTCAA-GACTAA-TCCATAGTA-CAAAC---TA-TCAA-------TTTGGAACTCTTCAG----------GC--AC-AA-AA---T-GGACG----T-GA-AAATAA-CG--A-A-CTTGATTTAA-ATT--GGGATTTAACACT-----TATGNAAAG-GTAAGAAATGCAAGTT-TTA-TAGT-GATAGGGAGTTAG--TAGGAT--GATGTCT--AAG-GTG-AAAA--T-TTGAAGCGGGC-AAG-ATGTTCAGTTTAAGT-CATTTT-AATCG--CAACAA-GCGGC-GA-AGTTGAGGCAAGATTTC-CC-GAATCA---CTTTG-TG-TGAC-A-TTG----GTCTGAGA---T---GGTA-AAGGC----------GA-------------C-CAGTCCAAAT--A---TT-----TA---GC--C---T----CG-----AC-C-AT-C-TCACTGAGAA
finalCons : ATCT-CAG-T-G-AGATTC-----GTCGAGGCTGGATA-TTT--GGAC-T--GGTC-GCCTCTAC--C--A-TCT---CAGAA----CCAATG-TCACAC--AACCTT-AT-TC-GGG-AAANTTT-G-CCT--C--AACTTC---CG-TCG--C-CTGT------TGCGATTA-AAGG----TTAA--ACTGAATATCTTGCCCGCTCTCAAA-TCTCACACTTAGACATCCCTGCGA-TACTAACTTCAAA---TT-T---CAC-CTTAGA-CATCC-TACTAACTCC--TATCGC-GATAA-AACTTGC--ATTTCTT--ACC----TTT---ACATA-AGT-GTTAAA--TCC-----CACATTTAA--------A-TCA-GGTTCGA--T-------------TATTTCACACGNCCATTCCGNA---------AT--TTCGTGCTCT-CTC-AAC-ACTGAA-GA-GTTCCAA------A----AT--------TGAT---A-GTTT-GT--T---ACT--ATC---------------A---A-CTA----------GTCTT-AAGG-T-A--CAG--AC-CTGTCTA-----TCTCTACTTTTAAATGAC-TTT-ACTTN-TCACAAAGCATT-T-CAAAATCAT--GAAAAACAAA-ATTAACAAATAGAAAACT-ACGTAAATTTC-AAACAG------TCTATCTGAAAACATTTTTA-AAACCGTTC-TG-TACCTCAA-GACTAA-TCCATAGTA-CAAAC---TA-TCAA-------TTTGGAACTCTTCAG----------GC--AC-AA-AA---T-GGACG----T-GA-AAATAA-CG--A-A-CTTGATTTAA-ATT--GGGATTTAACACT------ATGNAAAG-GTAAGAAATGCAAGTT-TTA-TAGT-GATAGGGAGTTAG--TAGGATG-----TCT--AAG-GTG-AAAA--T-TTGAAGCGGGC-AAG-ATGTTCAGTTTAAGT-CATTTT-AATCG--CAACAA-GCGGC-GA-AGTTGAGGCAAGATTTC-CC-GAATCA---CTTTG-TG-TGAC-A-TTG----GTCTGAGA---T---GGTA-AAGGC----------GA-------------C-CAGTCCAAAT--A---TT-----TA---GC--C---TCGACC-----------AT-C-TCACTGAGAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): CAATATTCTATCGTAAAGTTGCACACATTTAAATTATGTATGTACATGGATAGTGTCTGCAAAAATGACAACCACAGCTCACAAAGCACTTCAGCATGAAATTTAAAAACAATA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111 1111111 22222 111 1111 1 11111 111 222222 111 3333333 22222222222222222222222222222222222222222222222222222222222222222 1 11 222 1111 1 11 111111 3333333333 7777777777777777777 1111 1111111 11 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 1111 111 1 1 11111 11 1 11 111111 11 111 1 1111111 44444444444 111 1111 111 111111 1111 1 2222222 1111111111111111111111111 2222222222222222
lowQualScore : 4 4 8 2 111111 0 1 1 44 2 33 999 0000000 888 22222 5 0 444 1111 5 5 3 1 5 55555 1 000 5 77 77 777777 000 6 3333333 3 99 0 7 0 888 9 0 0 88888888888888888888888888888888888888888888888888888888888888888 5 0 77 5 22 000 1111 2 5 55 555555 0 4444444444 5 1111111111111111111 1 55 1111 9999999 77 0 4 5 00 5 5 5 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 1 5 1111 999 1 0 3 44444 0 7 55 0 00 9999 0 77 6 6 3 6 999999 0 88 4 2 6 6 3 6 9999 1 6 000 1 0 8888888 66666666666 77 5 5 000 666 2222 4 4 4 111 4 4 55 55 999999 555555 3 1 3 0000 3 3 3 3 88 3 0 3 55 99999 55 3 7777 99999 3 3 88 3 0 4 4 3 0 4 4 55 333 8 3 1 33 3 3 666 3 3 4 4 8888 7777777 555 8888888888888888888888888 2 33 666 66666 999 33 666 1111111111111111 2 2
lowQualScore : . . . . ...... . . . .. . .. ... ....... ... ..... . . ... .... . . . . . ..... . ... . .. .. ...... ... . ....... . .. . . . ... . . . ................................................................. . . .. . .. ... .... . . .. ...... . .......... . ................... . .. .... ....... .. . . . .. . . . ....................................................................................... . . . .... ... . . . ..... . . .. . .. .... . .. . . . . ...... . .. . . . . . . .... . . ... . . ....... ........... .. . . ... ... .... . . . ... . . .. .. ...... ...... . . . .... . . . . .. . . . .. ..... .. . .... ..... . . .. . . . . . . . . .. ... . . . .. . . ... . . . . .... ....... ... ......................... . .. ... ..... ... .. ... ................ . .
lowQualScore : 7 4 9 2 222222 3 7 9 55 1 11 333 6666666 888 99999 7 7 333 7777 7 7 0 4 7 99999 9 000 7 99 44 999999 000 7 7777777 7 22 3 0 2 888 0 8 8 22222222222222222222222222222222222222222222222222222222222222222 7 1 99 0 99 000 6666 0 7 77 000000 1 9999999999 7 4444444444444444444 3 77 6666 4444444 99 4 0 7 00 7 7 7 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 4 7 7 6666 333 4 7 7 33333 7 0 55 0 99 1111 3 99 7 7 2 7 222222 6 66 2 5 7 7 2 7 3333 7 7 000 4 1 6666666 77777777777 99 7 7 000 999 1111 4 4 4 999 0 0 22 55 666666 444444 3 0 3 4444 3 3 3 3 22 1 2 1 00 11111 00 6 7777 11111 6 6 66 6 2 0 0 7 9 0 0 55 888 2 6 4 00 6 6 444 6 6 0 0 5555 0000000 666 8888888888888888888888888 5 44 999 22222 444 44 999 6666666666666666 7 7
consensus : ATCT-CAG-T-G-AGATTC-----GTCGAGGCTGGATA-TTT--GGAC-T--GGTC-GCCTCTAC--C--A-TCT---CAGAA----CCAATG-TCACA-C-AACCTT-AT-TC-GGG-AAANTTT-G-CCT--C--AACTTC---CG-TCG--C-CTGT------TGCGATTA---A-A--GG---TTAA--ACTGAATATCTTGCCCGCTCTCAAA-TCTCACACTTAGACATCCCTGCGA-TACTAACTTC------T--T---CAC-CTTAGA-CATCC-TACTAACTCC-TATCGCGATAA-AACTTGC--ATTTCTT-ACC---TTT---ACATAAGT-GTTAAA--TCC-----CACATTTAA--------A-TCA-GGTTCGA--T-------------TATTTCACACGNCCATTC---CGNAAT--TTCGTGCTCT-CTC-AAC-ACTGAA-GA-GTTCCAA------A----AT--------TGAT---A-GTTT-GT--T---ACT--ATC---------------A---A-CTA----------GTCTT-AAGG-T-A--CAG--AC-CTGTCTA-----TCTCTACTTTTAAATGAC-TTT-ACTTN-TCACAAAGCATT-T-CAAAATCAT--GAAAAACAAA-ATTAACAAATAGAAAACT-ACGTAAATTTC-AAACAG------TCTATCTGAAAACATTTTT-AAAACCGTTC-TG-TACCTCAA-GACTAA-TCCATAGTA-CAAAC---TA-TCAA-------TTTGGAACTCTTCAG----------GC--AC-AA-AA---T-GGACG----T-GA-AAATAA-CG--A-A-CTTGATTTAA-ATT--GGGAT------TTAACA------C-TATGTA-AA----G-GTA-AGAAATGCAAGTT-TTA-T-AGTG-ATA-GGGAGTTAGT--AG-----GATG--TC-T----AA-----G-GTG-AAAA--T-TTGAAGCGGGC-AAG-ATGTTCAGTTTAAGT-CATTTT-AATCG--CAACAA-GCGGC-GA-AGTTGAGGCAAGATTTC-CC-GAATCA---CTTTG-TG-TGAC-A-TTG----GTCTGAGA---T---GGTA-AAGGC----------GA-------------C-CAGTCCAAAT--A---TT-----TA---GC--C---T----CG-----AC-C-AT-C-TCACTGAGAA
Reference ( family-605 ) : ATCT-CAG-T-G-AGATTC-----GTCGAGGCTGGATA-TTT--GGAC-T--GGTC-GCCTCTAC--C--A-TCT---CAGAA----CCAATG-TCACA-C-AACCTT-AT-TC-GGG-AAANTTT-G-CCT--C--AACTTC---CG-TCG--C-CTGT------TGCGATTA---A-A--GG---TTAA--ACTGAATATCTTGCCCGCTCTCAAA-TCTCACACTTAGACATCCCTGCGA-TACTAACTTCAAA---TT-T---CAC-CTTAGA-CATCC-TACTAACTCC-TATCGCGATAA-AACTTGC--ATTTCTT-ACC---TTT---ACATAAGT-GTTAAA--TCC-----CACATTTAA--------A-TCA-GGTTCGA--T-------------TATTTCACACGNCCATTC---CGNAAT--TTCGTGCTCT-CTC-AAC-ACTGAA-GA-GTTCCAA------A----AT--------TGAT---A-GTTT-GT--T---ACT--ATC---------------A---A-CTA----------GTCTT-AAGG-T-A--CAG--AC-CTGTCTA-----TCTCTACTTTTAAATGAC-TTT-ACTTN-TCACAAAGCATT-T-CAAAATCAT--GAAAAACAAA-ATTAACAAATAGAAAACT-ACGTAAATTTC-AAACAG------TCTATCTGAAAACATTTTT-AAAACCGTTC-TG-TACCTCAA-GACTAA-TCCATAGTA-CAAAC---TA-TCAA-------TTTGGAACTCTTCAG----------GC--AC-AA-AA---T-GGACG----T-GA-AAATAA-CG--A-A-CTTGATTTAA-ATT--GGGAT------TTAACA------C-TATGNA-AA----G-GTA-AGAAATGCAAGTT-TTA-T-AGTG-ATA-GGGAGTTAGT--AG-----GATG--TC-T----AA-----G-GTG-AAAA--T-TTGAAGCGGGC-AAG-ATGTTCAGTTTAAGT-CATTTT-AATCG--CAACAA-GCGGC-GA-AGTTGAGGCAAGATTTC-CC-GAATCA---CTTTG-TG-TGAC-A-TTG----GTCTGAGA---T---GGTA-AAGGC----------GA-------------C-CAGTCCAAAT--A---TT-----TA---GC--C---T----CG-----AC-C-AT-C-TCACTGAGAA
gi|1 : ATCT-CAG-T-G-AGATG------GTAGAGGCTAAATA-TTT--GGAC-T--GGTC-GCCTTTAC--C--A-TCT---CAGA-----CCAATG-TAACA-C-AACCTT-AT-TC-GGG-AAAATTT-G-CCT--C--AACTTC---CG-TCG--C-CTGT------TGCGATTA---A-AATGGC--TTAA--ACTGAACATCCTGTCGNNNNNNNNN-NNNNNNNNNNNNNNNNACGAACGGGTA-TAACTTCAAAAATTTAT---CACACTTGGAATATCCATACTAACTCC-TATCACAATAA-AACTTGC--ATTTCT--ACC---TTT---CTATAAGT-GTTAAA--TCC-----CA-ATTTAA--------A-TCA-AGTT-GG--T-------------TATTTCACACGTCCATT-------------TTGTGCT-T-CT--AAC-ACTGAA-GA-GTTCCAA------A----AT--------TGAT---A-GCTT-GT--T---ACT--GTC---------------A---A-CTA----------GTCTT-AAGG-T-A--CAG--AC-CTGTTTA-----TCGTTACTTTTAAATGAC-TTT-ACTTG-TCACAAAGCATT-T-CAAAATCAT--GAAAAACAAA-ATTAACAAATAGAAAACT-ACGTAAATTTC-AAACAG------TCTATCTGAAAACATTTTT--AAACCGTTC-TG-TACCTCAA-GACTAA-TCCATAGTA-CAAAC---TA-TCAA-------TTTGGAACTCTTCA-----------GC--AC-AA-AA---T-GGACG----T-GA-AAATAA-CG--A-A-CTTGATTTAA-ATT--GGGAT------TTAACACTTATTC-TATGAA-AA----G-GTA-AGAAATGCAAGTT-TTA-T-TGTG-ATC-GGGAGTTAGT--AGGATCCGATG--TC-T----AA-----G-GTG-AAAA--T-TTGAAGCGGGC-AAG-ATGTTCAGTTTAGGT-TATTTT-AATTG--CAACAG-GCGGCGGG-AGTTGAGGTAAATTTTC-CC-GAATAA---GGTTG-TG-TTGC-A-TTG----GTCTGAGA---T---GGTA-AAGGC----------GA-------------C-CAGTCCAAAT--A---TT-----TA---GC--C---T----CT-----AC-C-AT-C-TCACTGAGAA
gi|10 : AA----------GC--AC-AA-AC---T-ATATG----T-GA-AAATAA-CC--A-A-CTTGATTTAA-TTT--GGGAC------TGAACA------C-TACATA-AA----G-ATA-AGAAATGCAA-TT-TTA-T-AGTG-ATA-AGGAGTTAGT--AA-----GATG--TC-T----AA-----G-GTG-AAAA--T-CTGAAGCAGGC-AAG-AAATTCAGTTTCAGC-CATTTT-AATCG--CAACAA-GTGGCAGA-AGTTGAGGCAAGATTTC-CC-AAATCA---CTTTA-TG-TGAC-A-CTG----GTCTGAGA---TTC-AG-A-GAGGT----------GA-------------C-CAGTCCAAAT--A---AT-----GA---GC--CTTGT----CG-----A----AT-C-TCACTGAGAt
gi|11 : cttcagtgttgaga-GA-AAATAAACC--A-A-CTTG-TTTAA-ATTTTGGGAT------TTAACA------C-TATGCA-AA----G-GTA-AGAAATGCAAGTTCTTA-T-TGCG-ACA-TGGTGTTAGT--AG-----GATGATTC-T----AA-----G-GTG-TAAA--T-TTGAATC-GGC-AAGAATGTTCAGTTTAAGC-CATTTTAAATCG--CAACAA-GCGGC-CA-AGTTGAGGCAA-ATTTCACC-GAATAA---GTAGT-TG-TGAC-ATTTG----GTC-GAGAT--T---CGTA-GAGAC----------GG-------------CTCAGTCCAAAT--A---TT-----TACTCGCTTC---T----CG-----ACGA-AT-C-TCGCTGAAAA
gi|12 : -GA-AAATAA-CACTA-A-CTTGATTTA---CT--GTCAT------ATAACA------TGTATGTA-AT----G-GTA-AGCCATGCAAGTT-CCA-T-AATG-AAA-GGGATTTAAC--AA-----GGTG--TC-T----AA-----G--TC-AAAA--TGTTGAAGTGTGC-AAG-AAACTCAGACTAAGC-CATTTA-AATTT--TAACAA-GTGGCCAA-AGTTCAGACAAG-TTTC-CC-AAATCA---CTTTGAGG-TGAC-A-TCG----GTTTAAGA---TTCAGAT--GAGGC-----------A-------------T-CAACCCACAA--A---TC-----CA---AT--C---T----TG-----ACAA-AT-C-TCATCGAGA
gi|13 : AGACAGTTT-TG-TACCTCAA-GGCCAA-TGGATAGTA-CAAACTAATA-TGGAGTAGATTTTTGGAACTCTTCAAT---------GTTGAG-AA-AATATT-GAATATGTTT-GA-AAATAA-CA--A-T-CTTGATTTACTTTT--GGGAT------TTAACA------C-TATGTA-AA----G-GTA-AGAAATTCTAGAT-TTA-T-AATC-ATA-GGGAcaac
gi|14 : t-ATA-GTGAGTTAGT--AG------ACG--CT-T----AA-----G-ATA-AAGA--T-TAGAAGCGGGC-AGA-AAATTCAGTTTAAGT-CATGTT-AATCG--CAA----------------TCAGGCAAGATTTC-CC-GAATCA---CTTTG-TG-CGAG-A-CTG----GTCTGAGA---TTC-GG-A-AGAGC----------GC-------------C-AAGACC-AAT--A---TT-----CAG--GC--C---T----CG-----AC-G-AA-CTTCGCTGActaaggtaaatcaaagtccttaaagttctgaaacgag
gi|15 : taataTCG--CAACAA-GCGGCAGA-AGTTCAGGCAAGATTTC-CC-GAATCA---CTTTG-TG-TGAC-A-CTGACCAGTCTGAGATT-T---GGAA-GAGGT----------GA-------------C-CAGTCCAAATAAA---TTAGCGGCA---GC--C---T----CG-----ATGA-AT-C-TCGCCGgcaaaccgtcttctacaaatac
gi|15 : --A-A-CTTGATTTAA-TTT--GAGAT------TTAACA------C-TATGTA-AA----G-GTA-AGAAA----------TA-T-AGTG-ATG-GGGGGTTAGT--AG-----GATG--TCGC----AACAAGCG-GCA-GAAG--T-T-----CAGGC-AAG-ATTTCCCG----AAT-CACTTT-catcctactaaccccccatcactatatttcttacctttacatagtgttaaatctcaaattaaatcaagtt
gi|16 : cggcgagattcatcgaggctgccgctaatttatttggactggtcacctcttccaaatctcagactggtcagtgtcacacAGCCTAAATA-TTTT-GGAC-TTTGATCCGCCTTCAC--C--A-TCT---CAGAAC---CCAATGTTCACA-CAAACCGT-AT-TC-GGA-AA----T-G-CCT--TCAAACTTC---CG-TCGACC-CCGTTTTGAGTGCGATTA---
gi|17 : agccattccacatcaggtgaaatcaaa-CATTTT-A-TCG--CAACAAAGCGGC-GA-AGTCGAGGCAAGAT--C-CC-GAATCA---CTTTG-TG-TGACAA-CTG----GTCGGAGATTTT---GGAA-GAGACCT--------GA-------------C-CAGT-CAA----A---TT-----TA---GT--C---G----CG-----AC----T-C-TCTCGGAGA
gi|19 : ttagagTCT-AGA--------GTAGAAGGC----------GA-------------C-CAGTCCAAAT--A---TT-----TA---GC--C---T----CT-----AC-CAAT-C-TCACTGAGAt
gi|19 : -AAGGC----------GA-------------C-CAGTCCAAAT--A---TT-----T----GC--C---T----CT-----AC-CAAT-C-TCACTGAGAaggcgaccagtccaaatatttgcctctaccaatctcactgagattaa
gi|2 : tctcagtgagattggtagaggctaaatatttggactggtcgccttctactctagATCT-CAG-T---AGATG------GTAAAGGCTAAATA-TTT--GGAC-T--GGTCCGCCTTCAC--C--A-TCT---CAGA-----CCAAT--TCACAAC-AACCTT-AG-TC-GG---AAATTT-G-CCT--C--AACTTC---CG-TCG--CGCTGT------TGCGATAA---A-A--TAACATTAA--ACTGAACATCTTGCCCGCTTCAAAA-TTTCAC-CTTAG-CATCC-------TA-TAACGTCCCC---TA-T---CAC-AATAAA-CCTTC------ATTTC-TAT----------ACCT-----TTTC-----------------ATAAGT-GTTAAA--TCC-------CATTTAA--------ATTCA-GGTT-GG--T-------------TATTTCACGTG--CATTT---T-CAATGATTTGTGCTTT-CTCAAAC-ACTGAACGA-GTTCC-A------A----AT--------TGAT---ATATTC-G-------A----ATC---------------A---A-CTA----------GTCTT-AAGG-TAA--CA---AC-CTGT-TA-----T-TTTACTTTTAAGTGAC-CTT-ACTT--TCA-AAAGCATTAA-AAAAATCAT--GAAAAACAAATATTAAC-AATAGGAAACTAACGT-AATTTCAAAACAG------TCTATCTGAAAACAGTTTT-AAAACCGTTC-TG-TACCTCAACGACTAATTCCATAGTA-CAAAC---TATTCAA-------ATTTGAACTCTTCA-----------GC--ACGAA-AA---T-GGACG----T-GA-AAATAA-CG--ATACCTTGATTTAA-ATT---GGAT------TTAACA------C-TATGAA-AA----A-GTA-AAAA--GCAAGTT-TTA-T--GT--ACA-GTGAGTTAGT--AG-----GA-G--TC-T----AA-----G-GT--AAAA--T-TTGAATCGTGC-A---ATGTTCAGTTTAAGT-T-CTTT-AATCGCCCAAC-A-GCGAC-GA-AGTTGAGGCAA-ATTTC-CC-GAATAA---GTTGG-T----AC-A-TT------TCTGAGA---T----GTG-AA-GC-----------A-------------C-CAGTCCAAAT--A---TT-----TA---GC--C---T----TT-----AC-C-AT-C-TCACTGAGttaa
gi|20 : aACAA-ACGGC-CACAATTCAGGCAAGATTTC-CC-AAATTA---CTTTG-TGATG-C-A-TTG----GTCCGAGATTCT---GAT--AAGGC----------AA---------------CAGTT--ACT--A---TT-----CA---GC--C---T----CG-----Attt
gi|21 : tctTGAGA---T---GGTA-AAGGCTAAATATTTGGACTGGTCGCCTTCAC-CAGTCCAAAT--A---TT-----TA---GC--C---TTTA-CGGCTTTAC-C-AT-C-TCACTGAGAaata
gi|21 : taa---T---GGTG-AAGGC----------GA-------------C-CAGTCCAAAT--A---TT-----TA---GC--C---T----TT-----AC-C-AT-C-TCACTGAGActgagatta
gi|22 : taatctcagtgagatggtaaagccgtaaaggctaaatatttggacGGAT------TTAACGAGT---C-TATGTA-AAA---G-GTATAGAAATGCAAGTT-TAA-TCAGCG-ATAAGGGAGTTAAT--AG------ATG--TC-T----AA-----G-ATGAAAAA--T-TTGtta
gi|23 : ATCT-CAG-C-C-AGATTT-----GTCGAGGCTGGATA-TTT--GAAC-T--GACC--CCTCTaa
gi|24 : ctcagcaATCT-CAG-T-A-ACATTT-----GTCAAGGCTAAATA-TTT--GGAC-T--GGTT-GCtaatgcacgactaacaagatgtaa
gi|25 : gcaaacgactgtatttggactgtccaaaat---T---GGTG-AAGGC----------GA-------------C-CAGTCC-AAT--A---TT-----TA---GC--CT--T----TT-----AC-C-ATCC-TCACTGAGA
gi|26 : aATCT-CAG-T-G-AGATTC-----GTCGAGACTAAATA-TTT--GGAC-T--GATT-GTCTCTAA--TGAA-TCT---CAGAgatggatgaagcgacc
gi|27 : ctaATCT-CAT-T-G-AGATTC-----ATCGAGGCTAAATA-TTA--TGAC-T--GGAT-GCATCT
gi|28 : agtgta----------GA-------------C-CAGTCCAAAT--AAATTT-----TAC--GC--C---TTCTACGGCTTTAC-C-AT-C-TCACTGAGAtca
gi|29 : ATCT-CAG-TTG-AGATTCTTTTTGGCTCGGCTGGATA-TTT--AGAC-T--TGT--GCCTtta
gi|3 : ga-TTT--GGAC-T--GGTC-GCCTTCACCAC--A-TCTCCGCAGGAGGGGCTGATG--CACACC-ACCCTT-CT-TC-GGGCCCACTTT-GCCCT--C----CCTCACTCG-T-G--C-CTGT------TG-GATTACCCATA--CC---TTAACCCCTGAAAATCTTGCCCGCT-TCACATTTTCAC-CTTAGACAACTC--------CTAGC------------T---CAC-CCT--A-CATC---AATA------CACCG----------TTGCAAATTTCTTAACC---TTTTCCAAAT-AGTGGTTCAC--TCCCACCACACATT--A--------C-TCACGGTT-GT--T-------------TATTTT-CACGTCCATTTTCACATGAT--T--GTGCTTT-CC---AC-ACTGGG-AACGTTAC-A------A----AT--------TGAT---A-GTTTGGG--TAAAACTAAATC---------------AATCA-CTA----------GTCTTAAAAG-T----CAGAAAC-CTGT-TA-----TCTCTACTTT--AGTGAC--TT-ACTTG-TCACAAAGCATT-T--AAAACTA---GAAAAACAAC-ATTAACAAATAGGAAACT-ACGTAAATTTC-AAATAG------TCTATCTGAAAACATTTTT-AA---CGTTC-TG-TACCTC-A-GACTAT-TCTGT--CA-CAAAC---TAGTC-A-------TTTGGAA--CATCA-----------GC--AC-AATAA---TCGGACG----T-GAGAAATAA-C-----A-C-TGATTTAA-ATT--GGGATTTTCTGTTAA----------TAAGCA-AA----GAGTA-AGAAATGCAAGTT-TTA-T-TGTG-A-A-GGGAGTTAGT--AG-----GATG--TG-TACGGAA-----GAGTG-AACACTC-TTGAAGCGGGCGAAG-ATGTT-AGTTTCAGta
gi|30 : GGAT------TTAACA------C-TATGTA-AATTTAG-GTA-AGAAATGCAAGTT-TTA-T-CGTG-ATA-Gg
gi|31 : TACTTT-AAATGAC-TTTCACTTA-TCACAAAGCATT-T-CAAAAACGT--GAAAA
gi|32 : ATCT-CAGCT-G-AGATTC-----ATTGAGGATGAATA-TTT--GGAC-T--GA-C-GCCT
gi|33 : tATCT-CGG-TTG-AGATTCTCTTTGGCTTGGCTGGATA-TTT--GGAC-T--
gi|34 : -T-G-AGATTC-----AGCTCGGCTGGATA-TTT--GGAC-T--Gtg
gi|35 : tctaggtATCT-CGG-TTG-AGATTC-----AGCTCGGCTGGATA-TTT--GGTC-T--Gccgc
gi|36 : TCT-CAG-T-G-AGATTC-----GTCGAGGCT-AATATTTT--GGAC-T--GGt
gi|37 : ATCT-CGG-T-GGAGATTC-----GGCTCAGCTGGATG-TTT--GGAC-c
gi|38 : ATCT-CGG-TTG-AGATTC-----GGCTCGGCTGGATA-TTT--GGt
gi|39 : ATCT-CAGGT-G-AGATTC-----GGCTTGGCTGGATA-TTT--GGta
gi|4 : aATCT-CAT-G-G-AGATG------GTAAAAGCTAAATA-TTTTTGGACCT--GG-C-GCTTTTAC--C--A-TCT---CA-AA----CCAATG-TCACA----AC-TT-AT-TCCGGG-AAAATTT-C-CCT--C--AACTTC---CGGTCG--C--TGT------TGCGATTA---A-A--A--------------AATAACTT----------AAA-------ACT--GACATCTTTGC-----C--GCTTCAAA---TT-TTTCCAC-CTTAGA-CATCC-TACTAACTCCCTGTCACAATAAGAATTTGC--ATTTCTTTACC---TTT---TCATA-GT-GTTAAA--TCC-----AAT-TTTAA--------A-TCA-AGTTCG---T-------------TATTTT-CACGTCCATTC---AATGAT--TTTGTGCTTTTCTC-AACCACTGAA-GA-GTTTCCA------A----AT--------TGAT---A-GTTT-TG--T---ACT--ATC---------------A---AACTA----------GTCTT-AAGGAT-A--CAG--GC--TGT-TA-----TCTTTACTTTTCAATGAC-TTTTACTTTGTCACAAAGCATT-TTCAAAATCATTTGAAAAACAAA-ATTAACAAATAGAAAACT-ACGTAAATTTC-AAACAG------TCTATCTGAAAACATTTTTAAAAACCGTTCATGTTACCTCAA-GACTAA-TACATAGTACCAAAC---TA-TCAA-------
gi|40 : aCGAGGCTGGATA-TTT--GAAC-T--GA-C-GCCTCTTC--C--
gi|5 : cATCTACAG-T-G-AGATTC-----GTCGAGGCTACATA-TTT--TGAC-T--GGCC-GCCTCTTC--A--AATAT---CAGAA----CCAATG-TAACA-C-AACCTTTATAGC-GGG-AAATTTTTG-CCTTCC--ATCTTC---GG-CCG--C-TTGTC-----TGCGATTA---A-A--GG---TAAA--ACTGAATATCTTGCCCGCTCTCAAA-TCTCACACTTAGACATCCCTGCGA-TACTAACTC----------------C-CT------ATCC-T----------------GATAA-AA-TTGC--A-TTCTT-ACTAAATTT---ACAT-AGT-GTTAGAATTCC-----CACATTTAA-----------TA-GGTTCGA--TTCATATTCAAACCTATTGCAAATGGC--TTC---CGGAAT--TTCATGCTCT-CTC-AAC-ACTGAA-GA-GTTCCTA------ATAGTATATTTCA--TAAA---A-GTTT-G---T---ACT--AGCTTATTTAGTGGAGAAA---A-CTGT---------GTCTTGAATG-T-A--CA---ACACT-TCTAAGCGTCCTCAACCTTCAAATGACAACC-ACTGC-TCACAAAGCA
gi|6 : taATCTACAG-T-G-AGATTC-----GTCGAGGCTACATA-TTT--TGAC-T--GGCC-GCCTCTTC--A--AATAT---CAGAA----CCAATG-TAACA-C-AACCTTTATAGC-GGG-AAATTTTTG-CCTTCC--ATCTTC---GG-CCG--C-TTGTC-----TGCGATTA---A-A--GG---TAAA--ACTGAATATCTTGCCCGCTCTCAAA-TCTCACACTTAGACATCCCTGCGA-TACTAACTC----------------C-CT------ATCC-T----------------GATAA-AA-TTGC--A-TTCTT-ACTAAATTT---ACAT-AGT-GTTAGAATTCC-----CACATTTAA-----------TA-GGTTCGA--TTCATATTCAAACCTATTGCAAATGGC--TTC---CGGAAT--TTCATGCTCT-CTC-AAC-ACTGAA-GA-GTTCCAATAGTATA----TT--------TCATAAAA-GTTT-GTACT---ACT--AT
gi|7 : cactaa--T---ACT---TG---------------A---A-TTA----------GTCTT-GAAG-T-ATACAG--AC-CTGTCTA-----TCTCTACTTTTAAATGAC-TTT-ACTCA-TCACAAAGCATT-T-CAAAATCAT--GAAAATC--A-ATTGACAAATAGAAAACT-ACGTAAATTTC-AACCAGTCTGACTCTGTCTGAGGACAGTTTT--AGAC-------------------ACTAG----ATGGTA-CAAAC---TA-TCAA-------TTTGGAACTCTTCAGTGTTGAGAAAGC--AC-AA-AA---T-ATATT----T-G--AAAT-A-CA--A-G-TTTTATAGTA-ATA--GGGAG------TTAGTA------G-GATGTCTAA----G-ATG-AAAATTAGAAGTt
gi|7 : acaGAAATACAAGTT-TTA-T-AGTA-ATA-GGGAGTTAGT--AG-----GATG--TC-T----AA-----G-ATG-AAAA--T-TAGAAGTGAGC-AAG-A----------AATT-CACTTT-AATTG--CAAC-------T-GA-AGTACAGGCAAGATTTC-CCAAAATCA---CTATA-TG-gagcaagaaattcactttaattgcaactgaagtacaggcaagatttcccaaaatcactatatgac
gi|8 : acatacttgaattagtcttgaagtatacagacctgtctatctctacttttaaatgactttactcatcacaaagcatttcaaaatcatgaaaatcaattgacaaatagaaaactacgtaaatttcaaccagtctgactctgtctgaggacagttttagacactagatggtacaaactatcaatttggaactcttcagtgttgagaaagcacaaaatatattt---CAC-CTTAGA-CATCC-TACTAACTCCCTATCGCGATAA-AACTTGC--ATTTCTT-ACC---TTT---ACATAA-T-GTTAAA--TCC-----CACATTCAATAGGGTCGA-TCA-TTTTCAAACT-------------TATTGCAAATGGCT-TCC---CGGAAT--TTCATGCTCT-CTC-AAC-ACTGAA-GA-GTTCCAAT-----A----GTCTATTTCATAAT---A-GTAT-GTACT---ACT--ATT---------------T---A-GTAAGAAAACAGTGTCTG-AATG-T-A--CA---ACACTTTCTA-----AAGCGGCCTTCAAATGACAACC-ACTGC-TCACAAAGCACT-T-TAG---CAT--GAGATTTAAA-AACAATATAGAGAAAACT---GTCAAATTC-TAACAA------TCTATac
gi|9 : AAC---TA-TCAA-------TTTGGAACTCTTCAG-----------C--AC-AA-AA---T-G-ACG----TTGA-AAATAA-CG--A-A-CTTGATTTAA-ATT--GG-AT------TTAACA------C-TATGAA-AA----G-GTA-AGAAATGCAA--T-TTACT-GGTGGACA-GGGAGTTAGTTTAG-----GATG--TC-T----AA-----G-GTG-AAAAA-T-TTGAAGCGGGC-AGA-ATGTTCAGTTTAAGTGTATTTT--ATCG--TAACAG-GCGACGGA-AGTTGAGGCAATTTTTC-CC-GAATTAAGGATTGA-TG-TGAC-A-TTG----GTCCGAGAT--T---GGTA-AAGGC----------GA-------------C-CAGTCCAAAT--AT--TT-----TA---GC--C---T----TT------C-C-AT-C-TCAt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): CAATATTCTATCGTAAAGTTGCACACATTTAAATTATGTATGTACATGGATAGTGTCTGCAAAAATGACAACCACAGCTCACAAAGCACTTCAGCATGAAATTTAAAAACAATA