lowQualScore : 111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 333333333333333333333333333333333333333333333333333 1 1 11 1 1 33333 222222 666666666666666666666666 1 11 666666666666666666666666666666666 1 1 1 111 2222 1 222 1 1 2 11 1 1 333 1 1 11 1 222 1 666666666 1 111 22222222222222222222222222222222222222222222222222222222222222 3333333333333 1 1
lowQualScore : 99 6 000 6 6 7777 2 444444444444444444444444444444444444444444444444444 0 0 33 3 6 5 33333 222222 222222222222222222222222 3 0 55 2 4 333333333333333333333333333333333 3 3 3 444 0 0000 3 6 888 3 1 0 7 3 88 7 3 6 7 3 1 999 3 3 88 3 000 7 6 4 111111111 3 3 555 6 22222222222222222222222222222222222222222222222222222222222222 99 5555555555555 6 5 5
lowQualScore : .. . ... . . .... . ................................................... . . .. . . . ..... ...... ........................ . . .. . . ................................. . . . ... . .... . . ... . . . . . .. . . . . . . ... . . .. . ... . . . ......... . . ... . .............................................................. .. ............. . . .
lowQualScore : 22 7 222 7 7 0000 5 000000000000000000000000000000000000000000000000000 0 0 33 3 7 0 33333 000000 000000000000000000000000 0 7 33 0 3 333333333333333333333333333333333 3 3 3 333 7 3333 3 7 333 3 0 7 3 7 33 3 3 7 3 3 0 777 3 3 33 3 333 3 7 0 000000000 7 3 333 7 55555555555555555555555555555555555555555555555555555555555555 22 0000000000000 7 0 0
consensus : AGGTCCGGCA--CAA-TCTCTTTATCT-A-GCTATATAGCTTTATCC--NNNNNNNNTAGCTATATATAGCTTTATCAAACTTGATTTAGCTATTTCAAACCTTTCA-TCAAATTAA-TTTCTACAAGCAGAAA-AGTCGAATTTCACTGA-----GCGAA-CA-C-GTTT--------CAT-AC-TTGTGC-T-CCNTAGAACA-NTGTGNAAACAAGAAAAACTTT-TT-AA--AC---TAGGTC-------CCTTAGGAAG-AAATTGGA-TTTTAA-ATTTGCAGACGCCTAAGATC-ACCGAGTTGTC-AACCAACAGTTATCTAAAATACAGGATACA-A-AAAAGTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTTTCAAAA-GGACGTAATTTTTTCATGA-CTCTA--ATAAGAAC-GGTGTTCTG-GTTAGTTCAAAGCATAAA-ACATGTTCCA-AAA-TTA--TT-GTCAGACTTTTTAGCAATGNCATTG--T------ANTT-ATGAAACCCGATCTAATTCACTCGTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATG-ATAAAGCTAT--ATAGCTA-AAT--------AAAGAGA-TTGTGCCGGACC
Reference ( gi|1 ) : AGGTCCAGTA--CAA-TCTCTTTATCT-A-GCTATATAGCTTTATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACCTTTCA-TCAAATTAA-TTTCTACACCCAGAAA-AGTCGAATTTCAATGA-----GTGAA-TA-C-ATTT--------CAT-AC-TTATGC-T-CCTTAGAACA-CTATGGAAGCAAGAAAAACTTT-TT-AA--ACTGGTAGGTC-------CTTTAAAAAG-AAATTGGA-TTTTAA-ATTTGCAGATATCTAGGATC-ATGGAGTTGTC-AACCAACAGTTATCTAAAATACAGGCTACA-ATAAAAGTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAAATTTTCAAAA-GGACATAGTTTTTTTATGAACTCTA--ATAAGAAC-AGTGTTCTG-GTTAGTTCAAAGTATAAACATATGTTCCA-AAA-TTA--TT-GTTTAACTTTTCAGCAATGTCATTG--T------ACTT-ATGAAACTCTATGTAATTCACTC-T--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATATATAAAGCTAT--ATAGCTT-GAT--------AAAGAGA-TTGTACGGGCCC
gi|2 : AGGTCCGGCA--CAA-TCT--TTATTT-A-GCT-TATAGCTTTATC--ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCTTTCA-TCAATTAAA-TTTCTACAAGCAGAAACAGTCGAATTT-ACTGA-----GTGAA-CA-C-ATTT---------ATAAC-TTGTGCATACCATAG-ACA-ATGTGTAAACAAGAAAAACTTTCTT-TA--AC---TAGGTC-------CTTT-GAAAG-AAATTGGATTTTTAATATTTGCAGACACCTAAGATCAACCGAGTTGTCAAACCAACAGTTATCTAAATTACAGTATACAGAAAAAAGTCAA
gi|4 : cAAGTCCAGCA--CAA-TCTCTTT---T-A-GT-------CTTTATC-----------TAGCTATATATAGCTTTATCAAACTTGATTTAGCTATTTCAAACCTCTCA-TCAAAATAA-TTTCTAAAAGCAGAAA-AGTCGAATTTCACTCATCGTCGCAAACCA-CGGTTTTTAGTCCACAT-ACGTNNNNN-N-NNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NN-AAGCACCCGTGGGTCACTAGGTCCTTA--AAG-AAATTGGA-TGTTAA-ATTTGCAGATGTCTAGGATC-ATTGAGTTGTC-AACCAACAGTTATCTAAAATACAGGATACA---AAAAATCAAagaatgatcaagtgaataatggattgtcaatcatgatacccattgtttggaagtcatcattactttaacatgcttcaacgcaccaaggatagtggacagttgtgggaaaaaaggaattctttttggcatcaacatttttcaaaaggacgtaatttgtcatgactctatgatatgaaccagtttctgcgttagttcaaagcatgaaacatgttcaataaattgatttgccagactttttagcaatggcattgtaagttataaaaccaatcaagttcactcgtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgataagcctaatagctcaaataaagagattgtgccggacc
gi|3 : cGGTCCAGTAAACAA-TCTCTTTAT-T-A-GCTATA-AGCTTTATCC--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCTTTCACTCAAATTAACTTTCTACACCCAGAAA-AGTCGCATTTCACTGA-----GTGAA-TACC-ATTT--------CAT-AT-TTATG----TCTTAGAACAGCTATGGAAACAAGAAAAACTTT-TTGAA--AC---TAGGTC---------TTAAGAAGAAAATTGGA-TTTTAA-ATTTGCAAAC-CCTAAGATC-ACTGAGTTGTC-ACCGAACAGTTATCTAAAATACAGGCTACA-ATAAAAGTCAATagatgatcaagtgaataatggattatcaattttgaatccccattgtgaaatcatcatactttaacatgnaatttagaagggtcaagaaaattagatgtgtgaaataaggcaatanaaaggacatcattttgtcatgcactctaattagaacggtgatctggttagttcaaagcataaacatgttccaaaattattgtcagactttttagcaatgccattgacttgtataatttatgaaacctgatctaattcac
gi|2 : GGTCCGGCA--CAA-TCTCTTTATTTGA-GCTAT-TAGGCTTATCgatggatcaaatgaaaatagatggattgtcaatcatgaatcccttgtgaatcatcttacttttaacacgctgtccaacgcacacgggtagaggatacagttatgagaacaaaaggaattctttgttgctggaattttcaaaaaggacgtagttttttcatgatctaataaggcagtgttcggttagttcaaagtataaaacatgtcccaaaaattatttgttcgacttataaatgtcattgtactttatgaaactctatgtaattcacctaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggataagtatatagcttagaaaagagatttgtactgga
gi|15 : caggtccggcacaatctttatttagcttatagctttatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctttcatcaattaaatttctacaagcagaaacagtcgaatttactgagtgaacacatttataacttgtgcataccatagacaatgtgtaaacaagaaaaactttctttaactaggtcctttgaaagaaattggatttttaatatttgcagacacctaagatcaaccgagttgtcaaaccaacagttatctaaattacagtatacagaaaaaagtcaaagaatgatcaagtgaataatggattgtcaatcatgatacccattgtttggaagtcatcattactttaacatgcttcaacgcaccaaggatagtggacagttgtgggaaaaaaggaattctttttggcatcaacatttttcaaaaggacgtaatttgtcatgactctatgatatgaaccagtttctgcgttagttcaaagcatgaaacatgttcaataaattgatttgccagactttttagcaatggcattgtaagttataaaaccaatcaagttcactcgtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntGGTCCAGTG--CAA-TCTCTTTATCT-A-GCTACATAGCTTTAT
gi|3 : TCCAGTA--CAAATCTCTTT-TCT-AAGCTATATA--CTTATCC
gi|11 : ggtccagtaaacaatctctttattagctataagctttatccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacctttcactcaaattaactttctacacccagaaaagtcgcatttcactgagtgaataccatttcatatttatgtcttagaacagctatggaaacaagaaaaactttttgaaactaggtcttaagaagaaaattggattttaaatttgcaaaccctaagatcactgagttgtcaccgaacagttatctaaaatacaggctacaataaaagtcaatgatggatcaaatgaaaatagatggattgtcaatcatgaatcccttgtgaatcatcttacttttaacacgctgtccaacgcacacgggtagaggatacagttatgagaacaaaaggaattctttgttgctggaattttcaaaaaggacgtagttttttcatgatctaataaggcagtgttcggttagttcaaagtataaaacatgtcccaaaaattatttgttcgacttataaatgtcattgtactttatgaaactctatgtaattcacctaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAACCTTTCA-TCAAATTAA-TTTCTACA
gi|3 : agcttgatttagctatttttAATTTTCAAAAAGGACGTAGTTTTTTCATGA--TCTA--ATAAGG-C-AGTGTTC-G-GTTAGTTCAAAGTATAAA-ACATGTCCCA-AAAATTA--TTTGTTCGACTTAT-A--AATGTCATTG--T------ACTTTATGAAACTCTATGTAATTCAC-C-TAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAT-----AAG-TAT--ATAGCTT-AGA--------AAAGAGATTTGTACTGGagcataaga
gi|2 : ggtccagtaaacaatctctttattagctataagctttatccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacctttcactcaaattaactttctacacccagaaaagtcgcatttcactgagtgaataccatttcatatttatgtcttagaacagctatggaaacaagaaaaactttttgaaactaggtcttaagaagaaaattggattttaaatttgcaaaccctaagatcactgagttgtcaccgaacagttatctaaaatacaggctacaataaaagtcaatgatggatcaaatgaaaatagatggattgtcaatcatgaatcccttgtgaatcatcttacttttaacacgctgtccaacgcacacgggtagaggatacagttatgagaacaaaaggaattctttgttgctggTTTTCAAAA-GGACGTAATTTGTC-ATGA-CTCTATGATATGAACCAGT-TTCTGCGTTAGTTCAAAGCATGAA-ACATGTTCAATAAA-TTGATTT-GCCAGACTTTTTAGCAATGGCATTG--TA-----AGTT-ATAAAAC-CAATCAAGTTCACTCGT--ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG-ATAAGCCTA---ATAGCTCAAAT--------AAAGAGA-TTGTGCCGGACCa
gi|4 : caggtccggcacaatctttatttagcttatagctttatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctttcatcaattaaatttctacaagcagaaacagtcgaatttactgagtgaacacatttataacttgtgcataccatagacaatgtgtaaacaagaaaaactttctttaactaggtcctttgaaagaaattggatttttaatatttgcagacacctaagatcaaccgagttgtcaaaccaacagttatctaaattacagtatacagaaaaaagtcaaagaatgatcaagtgaataatggattgtcaatcatgatacccattgtttggaagtcatcattactttaacatgcttcaacgcaccaaggatagtggacagttgtgggaaaaaaggaattctttttggcatcaacatAAA-GGACATCATTTTGTCATGCACTCTA--ATTAGAAC-GGTGATCTG-GTTAGTTCAAAGCATAAAC--ATGTTCCA-AAA-TTA--TT-GTCAGACTTTTTAGCAATGCCATTGACTTGTATAATTT-ATGAAACCTGATCTAATTCAC
gi|3 : caagtccagcacaatctcttttagtctttatctagctatatatagctttatcaaacttgatttagctatttcaaacctctcatcaaaataatttctaaaagcagaaaagtcgaatttcactcatcgtcgcaaaccacggtttttagtccacatacgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagcacccgtgggtcactaggtccttaaagaaattggatgttaaatttgcagatgtctaggatcattgagttgtcaaccaacagttatctaaaatacaggatacaaaaaatcaaagatgatcaagtgaataatggattatcaattttgaatccccattgtgaaatcatcatactttaacatgnaatttagaagggtcaagaaaattagatgtgtgaaataaggcaatanATAAAGCT-T--ATAGCT--AAT--------AAAGAGA-TTGT
gi|2 : ggtccagtaaATAAAGCTAT--A-AGCTA-AAT--------AA--AGA-TTGTGCCGGACCccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacctttcactcaaattaactttctacacccagaaaagtcgcatttcactgagtgaataccatttcatatttatgtcttagaacagctatggaaacaagaaaaactttttgaaactaggtcttaagaagaaaattggattttaaatttgcaaaccctaagatcactgagttgtcaccgaacagttatctaaaatacaggctacaataaaagtcaatgatggatcaaatgaaaatagatggattgtcaatcatgaatcccttgtgaatcatcttacttttaacacgctgtccaacgcacacgggtagaggatacagttatgagaacaaaaggaattctttgttgctggaattttcaaaaaggacgtagttttttcatgatctaataaggcagtgttcggttagttcaaagtataaaacatgtcccaaaaattatttgttcgacttataaatgtcattgtactttatgaaactctatgtaattcacctaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggataagtatatagcttagaaaagagatttgtactgga
gi|4 : caATAAAGCTATATATAGCTA-GATAAAGACTAAAAGAGA-TTGTGCTGGcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctttcatcaattaaatttctacaagcagaaacagtcgaatttactgagtgaacacatttataacttgtgcataccatagacaatgtgtaaacaagaaaaactttctttaactaggtcctttgaaagaaattggatttttaatatttgcagacacctaagatcaaccgagttgtcaaaccaacagttatctaaattacagtatacagaaaaaagtcaaagaatgatcaagtgaataatggattgtcaatcatgatacccattgtttggaagtcatcattactttaacatgcttcaacgcaccaaggatagtggacagttgtgggaaaaaaggaattctttttggcatcaacatttttcaaaaggacgtaatttgtcatgactctatgatatgaaccagtttctgcgttagttcaaagcatgaaacatgttcaataaattgatttgccagactttttagcaatggcattgtaagttataaaaccaatcaagttcactcgtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgataagcctaatagctcaaataaagagattgtgccggacc
gi|15 : caagtATAAAGCTAT--GTAGCTA-GAT--------AAAGAGA-TTGCACTGGACCcaaacttgatttagctatttcaaacctctcatcaaaataatttctaaaagcagaaaagtcgaatttcactcatcgtcgcaaaccacggtttttagtccacatacgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagcacccgtgggtcactaggtccttaaagaaattggatgttaaatttgcagatgtctaggatcattgagttgtcaaccaacagttatctaaaatacaggatacaaaaaatcaaagatgatcaagtgaataatggattatcaattttgaatccccattgtgaaatcatcatactttaacatgnaatttagaagggtcaagaaaattagatgtgtgaaataaggcaatanaaaggacatcattttgtcatgcactctaattagaacggtgatctggttagttcaaagcataaacatgttccaaaattattgtcagactttttagcaatgccattgacttgtataatttatgaaacctgatctaattcac
13 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): CTTTTAGTATAGATCTATTAATGTAAGTCTTTAAGTTAATCAATCATTAGTTTGAAAGCTAGTTTGAAAGCTTAATTAAATCTGTATTCAAAAGTTAACAAGTCGTCAAATGTCTAGACAGTTGAAGGCATCG
Unaligned ( gi|6 ): TCGCAAACCACGGTTTGAGTCCACATACGTTGTCTCAAACGTGATGATGGAGAGAATCGATAAGAAGCACCCGTGGGTCACCGACAGA
Unaligned ( gi|7 ): CCACGGTTTGAGTCCACATACGTTCTCTCAAACGTTTGATGATGGAGAAATCGATAAGAAGCACCCGTGGGTCACCGACA
Unaligned ( gi|8 ): GCAAACCAGGGTTTTGAGTCCACATACGTTTCGATGATGAAGAGAATCGATAAGAAGCACCCGTGGGTCACCGACAAT
Unaligned ( gi|9 ): ATACGTTGCTGGATGATGGAGAGAATCGATAAGAAGCACCCGTGGGTCACCGACGATA
Unaligned ( gi|10 ): TTGAGTCCACATACGTGATGGAGAGAATCGTTAAAAAGCACCCGCCGGTCACCGACGA
Unaligned ( gi|12 ): GATGATGGGGAATATCGATAAGAAGCACCCGTGGGCCACCGACGAT
Unaligned ( gi|13 ): GATGCGGGAGGATCGATATGACGCACCCGTGGGTCACCGCACGA
Unaligned ( gi|14 ): GAAGCAAATAAAATGTGAATGATCAAAACGCATCGGTCGC
Unaligned ( gi|16 ): AATCGATAAGAAGCACCCGCCGGTCACCGAAGAT
Unaligned ( gi|17 ): GATAAGAAGCACCCGTGGGTCACCAACGATGCA
Unaligned ( gi|18 ): AGAGCAAATTAAAATTGAATGTCAAAACGCATG
Unaligned ( gi|19 ): GTCGTCGCAAACCACGGTTTTGAGTCCACATA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 55555555555 22222 1 22 333333333 1 1 222 11 1 1 5555555555555 111 1 111 1 1 1 1 1 1 11 2 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 2 11 11 1 11 111 22 4444444444444 11 8888888888888888888888888888888888888888888888888888888888888 22 1
lowQualScore : 2 11 0 8 66666 88888888888 8 8 8 0 8 2 55555 2 0 22 888888888 0 0 0 555 1 5 11 0 1 0 0 5555555555555 777 5 888 0 0 0 0 0 4 0 3 33 0 2 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 3 0 2 33 3 22 2 3 0 33 111 33 3 3 2 1 5555555555555 33 2 8888888888888888888888888888888888888888888888888888888888888 6 7 11 3 0 3
lowQualScore : . .. . . ..... ........... . . . . . . ..... . . .. ......... . . . ... . . .. . . . . ............. ... . ... . . . . . . . . .. . . .......................................................................................................................................... . . . . .. . .. . . . .. ... .. . . . . ............. .. . ............................................................. . . .. . . .
lowQualScore : 8 00 8 2 66666 55555555555 0 0 0 6 0 5 00000 0 0 00 888888888 0 0 8 888 0 8 00 8 0 0 0 0000000000000 555 0 000 0 0 0 5 0 2 0 0 88 0 5 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 2 0 5 88 2 00 5 2 0 22 000 88 5 2 5 0 5555555555555 00 5 0000000000000000000000000000000000000000000000000000000000000 7 3 77 3 7 7
consensus : AGGTCCAGTA--CAATCTCTTTATCTAGCTATATAGCTTTATCC--NNNNNNNNTAGCTATATATAGCTTTATCAAGCTTGATTTAGCTATTTC-AAACCTTTCA-TCAAATTAA-TTTCTACAAGCAGAAA-AGTCGAATTTCACTGA-----GCGAA-CAC-ATTT--------CAT-AC-TTATGC-T-CCTTAGAACAN-TATGGAAACAAGAAAAACTTT-TT-AA-------------AC---TAGGTCCCTTAAAAAG-AAATTGGA-TTTTAA-ATTTGCAGACGCCTAGGATC-ACCGAGTTGTC-AACCAACAGTTATCTAAAATACAGGNTAC--AATAAAAGTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAAATTTTCAAAA-GGACGTAGTTTTTTCATG-ACTCTA--ATAAGAAC-AGTGTTCTG-GTTAGTTCAAAGCATAAA-ACATGTTCC-A-AAATTA--TTGTCNGACTTTTTAGCAATGTCATTG--T------A-T-TTATGAAACCCNATNTAATTCACTC-TAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATG-ATAAAGCTATATAGCT-TAATAAAGAGA-TTGTACCGGACC
Reference ( family-567 ) : AGGTCCGGCA--CAATCTCTTTATCTAGCTATATAGCTTTATCC--NNNNNNNNTAGCTATATATAGCTTTATCAAACTTGATTTAGCTATTTC-AAACCTTTCA-TCAAATTAA-TTTCTACAAGCAGAAA-AGTCGAATTTCACTGA-----GCGAA-CAC-GTTT--------CAT-AC-TTGTGC-T-CCNTAGAACAN-TGTGNAAACAAGAAAAACTTT-TT-AA-------------AC---TAGGTCCCTTAGGAAG-AAATTGGA-TTTTAA-ATTTGCAGACGCCTAAGATC-ACCGAGTTGTC-AACCAACAGTTATCTAAAATACAGGATAC--AA-AAAAGTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTTTCAAAA-GGACGTAATTTTTTCATG-ACTCTA--ATAAGAAC-GGTGTTCTG-GTTAGTTCAAAGCATAAA-ACATGTTCC-A-AAATTA--TTGTCAGACTTTTTAGCAATGNCATTG--T------A-N-TTATGAAACCCGATCTAATTCACTCGTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATG-ATAAAGCTATATAGCT-AAATAAAGAGA-TTGTGCCGGACC
gi|1 : AGGTCCAGTA--CAATCTCTTTATCTAGCTATATAGCTTTATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-AAACCTTTCA-TCAAATTAA-TTTCTACACCCAGAAA-AGTCGAATTTCAATGA-----GTGAA-TAC-ATTT--------CAT-AC-TTATGC-T-CCTTAGAACAC-TATGGAAGCAAGAAAAACTTT-TT-AA-------------ACTGGTAGGTCCTTTAAAAAG-AAATTGGA-TTTTAA-ATTTGCAGATATCTAGGATC-ATGGAGTTGTC-AACCAACAGTTATCTAAAATACAGGCTAC--AATAAAAGTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAAATTTTCAAAA-GGACATAGTTTTTTTATGAACTCTA--ATAAGAAC-AGTGTTCTG-GTTAGTTCAAAGTATAAACATATGTTCC-A-AAATTA--TTGTTTAACTTTTCAGCAATGTCATTG--T------A-C-TTATGAAACTCTATGTAATTCACTC-T--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATATATAAAGCTATATAGCT-TGATAAAGAGA-TTGTACGGGCCC
gi|11 : AGCTTGATTTAGCTATTTTTAAACCTTTCA-TCAAATTAA-TTTCTACAAGCATAAG-A
gi|15 : GGTCCAGTG--CAATCTCTTTATCTAGCTACATAGCTTTAT
gi|2 : AGGTCCGGCA--CAATCT--TTATTTAGCT-TATAGCTTTATCA--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNACCTTTCA-TCAATTAAA-TTTCTACAAGCAGAAACAGTCGAATTT-ACTGA-----GTGAA-CAC-ATTT---------ATAAC-TTGTGCATACCATAG-ACAA-TGTGTAAACAAGAAAAACTTTCTT-TA-------------AC---TAGGTCCTTT-GAAAG-AAATTGGATTTTTAATATTTGCAGACACCTAAGATCAACCGAGTTGTCAAACCAACAGTTATCTAAATTACAGTATACAGAA-AAAAGTCAA
gi|2 : cTTTTCAAAA-GGACGTAATTTGT-CATG-ACTCTATGATATGAACCAGT-TTCTGCGTTAGTTCAAAGCATGAA-ACATGTTCA-ATAAATTGATTTGCCAGACTTTTTAGCAATGGCATTG--T------A-AGTTATAAAACC-AATCAAGTTCACTCGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--TG-ATAAGCCTA-ATAGCTCAAATAAAGAGA-TTGTGCCGGACCagaatgatcaagtgaataatggattgtcaatcatgatacccattgtttggaagtcatcattactttaacatgcttcaacgcaccaaggatagtggacagttgtgggaaaaaaggaattctttttggcatcaacatttttcaaaaggacgtaatttgtcatgactctatgatatgaaccagtttctgcgttagttcaaagcatgaaacatgttcaataaattgatttgccagactttttagcaatggcattgtaagttataaaaccaatcaagttcactcgtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgataagcctaatagctcaaataaagagattgtgccggacc
gi|3 : caggtccggcacaatctttatttagcttatagctttatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctttcatcaattaaatttctacaagcagaaacagtcgaatttactgagtgaacacatttataacttgtgcataccatagacaatgtgtaaacaagaaaaactttctttaactaggtcctttgaaagaaattggatttttaatatttgcagacacctaagatcaaccgagttgtcaaaccaacagttatctaaattacagtatacagaaaaaagtcaaagaatgatcaagtgaataatggattgtcaatcatgatacccattgtttggaagtcatcattactttaacatgcttcaacgcaccaaggatagtggacagttgtgggaaaaaaggaattctttttggcatcaacatGGTCCAGTAAACAATCTCTTTAT-TAGCTATA-AGCTTTATCC--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NAACCTTTCACTCAAATTAACTTTCTACACCCAGAAA-AGTCGCATTTCACTGA-----GTGAA-TACCATTT--------CAT-AT-TTATGT----CTTAGAACAGCTATGGAAACAAGAAAAACTTT-TTGAA-------------AC---TAGGT--CTTAAGAAGAAAATTGGA-TTTTAA-ATTTGCAAAC-CCTAAGATC-ACTGAGTTGTC-ACCGAACAGTTATCTAAAATACAGGCTAC--AATAAAAGTCAAT
gi|3 : AATTTTCAAAAAGGACGTAGTTTTTTCATG-A-TCTA--ATAAGG-C-AGTGTTC-G-GTTAGTTCAAAGTATAAA-ACATGTCCCAA-AAATTAT-TTGTTCGAC-TTATA--AATGTCATTG--T------ACT-TTATGAAACTCTATGTAATTCACC--TAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAT-----AAG-TATATAGCT-TAGAAAAGAGATTTGTACTGGAgatggatcaaatgaaaatagatggattgtcaatcatgaatcccttgtgaatcatcttacttttaacacgctgtccaacgcacacgggtagaggatacagttatgagaacaaaaggaattctttgttgctggaattttcaaaaaggacgtagttttttcatgatctaataaggcagtgttcggttagttcaaagtataaaacatgtcccaaaaattatttgttcgacttataaatgtcattgtactttatgaaactctatgtaattcacctaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggataagtatatagcttagaaaagagatttgtactgga
gi|4 : ggtccagtaaacaatctctttattagctataagctttatccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacctttcactcaaattaactttctacacccagaaaagtcgcatttcactgagtgaataccatttcatatttatgtcttagaacagctatggaaacaagaaaaactttttgaaactaggtcttaagaagaaaattggattttaaatttgcaaaccctaagatcactgagttgtcaccgaacagttatctaaaatacaggctacaataaaagtcaatgatggatcaaatgaaaatagatggattgtcaatcatgaatcccttgtgaatcatcttacttttaacacgctgtccaacgcacacgggtagaggatacagttatgagaacaaaaggaattctttgttgctggAAGTCCAGCA--CAATCTCTTT---TAGT-------CTTTATC-----------TAGCTATATATAGCTTTATCAAACTTGATTTAGCTATTTC-AAACCTCTCA-TCAAAATAA-TTTCTAAAAGCAGAAA-AGTCGAATTTCACTCATCGTCGCAAACCACGGTTTTTAGTCCACAT-ACGTNNNNN-N-NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNN-NN-AAGCACCCGTGGGTCAC---TAGGT-CCTTA--AAG-AAATTGGA-TGTTAA-ATTTGCAGATGTCTAGGATC-ATTGAGTTGTC-AACCAACAGTTATCTAAAATACAGGATAC--AA-AAAA-TCAA
gi|4 : cAAA-GGACATCATTTTGTCATGCACTCTA--ATTAGAAC-GGTGATCTG-GTTAGTTCAAAGCATAAA--CATGTTCC-A-AAATTA--TTGTCAGACTTTTTAGCAATGCCATTGACTTGTATAA-T-TTATGAAACCTGATCTAATTCACagatgatcaagtgaataatggattatcaattttgaatccccattgtgaaatcatcatactttaacatgnaatttagaagggtcaagaaaattagatgtgtgaaataaggcaatanaaaggacatcattttgtcatgcactctaattagaacggtgatctggttagttcaaagcataaacatgttccaaaattattgtcagactttttagcaatgccattgacttgtataatttatgaaacctgatctaattcac
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CTTTTAGTATAGATCTATTAATGTAAGTCTTTAAGTTAATCAATCATTAGTTTGAAAGCTAGTTTGAAAGCTTAATTAAATCTGTATTCAAAAGTTAACAAGTCGTCAAATGTCTAGACAGTTGAAGGCATCG
Unaligned ( gi|6 ): TCGCAAACCACGGTTTGAGTCCACATACGTTGTCTCAAACGTGATGATGGAGAGAATCGATAAGAAGCACCCGTGGGTCACCGACAGA
Unaligned ( gi|7 ): CCACGGTTTGAGTCCACATACGTTCTCTCAAACGTTTGATGATGGAGAAATCGATAAGAAGCACCCGTGGGTCACCGACA
Unaligned ( gi|8 ): GCAAACCAGGGTTTTGAGTCCACATACGTTTCGATGATGAAGAGAATCGATAAGAAGCACCCGTGGGTCACCGACAAT
Unaligned ( gi|9 ): ATACGTTGCTGGATGATGGAGAGAATCGATAAGAAGCACCCGTGGGTCACCGACGATA
Unaligned ( gi|10 ): TTGAGTCCACATACGTGATGGAGAGAATCGTTAAAAAGCACCCGCCGGTCACCGACGA
Unaligned ( gi|12 ): GATGATGGGGAATATCGATAAGAAGCACCCGTGGGCCACCGACGAT
Unaligned ( gi|13 ): GATGCGGGAGGATCGATATGACGCACCCGTGGGTCACCGCACGA
Unaligned ( gi|14 ): GAAGCAAATAAAATGTGAATGATCAAAACGCATCGGTCGC
Unaligned ( gi|16 ): AATCGATAAGAAGCACCCGCCGGTCACCGAAGAT
Unaligned ( gi|17 ): GATAAGAAGCACCCGTGGGTCACCAACGATGCA
Unaligned ( gi|18 ): AGAGCAAATTAAAATTGAATGTCAAAACGCATG
Unaligned ( gi|19 ): GTCGTCGCAAACCACGGTTTTGAGTCCACATA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 55555555555 22222 1 2 333333333 1 222 11 1 1 666666666666666666 111 1 1 1 1 1 1 111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 2 11 1 1 11 111 22 444444444444 888888888888888888888888888888888888888888888888888888 22 1 1
lowQualScore : 11 0 8 66666 88888888888 8 8 8 0 8 2 55555 2 0 0 888888888 0 555 5 11 0 0 666666666666666666 2 2 333 0 0 0 0 0 4 0 1 666 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 3 0 2 33 3 0 2 3 0 33 111 33 1 3 2 0 555555555555 2 1 1 7 111111111111111111111111111111111111111111111111111111 55 6 7 3 3 3
lowQualScore : .. . . ..... ........... . . . . . . ..... . . . ......... . ... . .. . . .................. . . ... . . . . . . . . ... .................................................................................................................................... . . . . .. . . . . . .. ... .. . . . . ............ . . . . ...................................................... .. . . . . .
lowQualScore : 00 8 2 66666 55555555555 0 0 0 6 0 5 00000 0 0 0 888888888 0 888 8 00 0 0 222222222222222222 5 0 222 0 0 0 5 0 2 0 0 888 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 2 0 5 88 2 0 5 2 0 22 000 88 0 2 5 8 222222222222 5 0 0 3 777777777777777777777777777777777777777777777777777777 33 7 3 3 3 7
consensus : AGGTCCAGTA--CAATCTCTTTATCTAGCTATATAGCTTTATCC--NNNNNNNNTAGCTATATATAGCTTTATCAAGCTTGATTTAGCTATTTC-AAACCTTTCA-TCAAATTAA-TTTCTACAAGCAGAAA-AGTCGAATTTCACTGA-----GCGAA-CAC-ATTT--------CAT-ACTTATGC-T-CCTTAGAACAN-TATGGAAACAAGAAAAACTTT-TT-AAA--------------C---TAGGTCCTTTAAAAAG-AAATTGGA-TTTTAA-ATTTGCAGACGCCTAGGATC-ACCGAGTTGTC-AACCAACAGTTATCTAAAATACAGGNTACA-ATAAAAGTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAAATTTTCAAAA-GGACGTAGTTTTTTCATG-ACTCTA--ATAAGAAC-AGTGTTCTG-GTTAGTTCAAAGCATAAA-ACATGTTCC-A-AAATTA--TTGTCNGACTTTTTAGCAATGTCATTG--T------A-TTTATGAAACCCNATNTAATTCACTC-TA-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATG-ATAAAGCTATATAGCTT-AATAAAGAGA-TTGTACCGGACC
Reference ( family-567 ) : AGGTCCAGTA--CAATCTCTTTATCTAGCTATATAGCTTTATCC--NNNNNNNNTAGCTATATATAGCTTTATCAAGCTTGATTTAGCTATTTC-AAACCTTTCA-TCAAATTAA-TTTCTACAAGCAGAAA-AGTCGAATTTCACTGA-----GCGAA-CAC-ATTT--------CAT-ACTTATGC-T-CCTTAGAACAN-TATGGAAACAAGAAAAACTTT-TT-AAA--------------C---TAGGTCCCTTAAAAAG-AAATTGGA-TTTTAA-ATTTGCAGACGCCTAGGATC-ACCGAGTTGTC-AACCAACAGTTATCTAAAATACAGGNTACA-ATAAAAGTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAAATTTTCAAAA-GGACGTAGTTTTTTCATG-ACTCTA--ATAAGAAC-AGTGTTCTG-GTTAGTTCAAAGCATAAA-ACATGTTCC-A-AAATTA--TTGTCNGACTTTTTAGCAATGTCATTG--T------A-TTTATGAAACCCNATNTAATTCACTC-TAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATG-ATAAAGCTATATAGCTT-AATAAAGAGA-TTGTACCGGACC
gi|1 : AGGTCCAGTA--CAATCTCTTTATCTAGCTATATAGCTTTATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-AAACCTTTCA-TCAAATTAA-TTTCTACACCCAGAAA-AGTCGAATTTCAATGA-----GTGAA-TAC-ATTT--------CAT-ACTTATGC-T-CCTTAGAACAC-TATGGAAGCAAGAAAAACTTT-TT-AAA--------------CTGGTAGGTCCTTTAAAAAG-AAATTGGA-TTTTAA-ATTTGCAGATATCTAGGATC-ATGGAGTTGTC-AACCAACAGTTATCTAAAATACAGGCTACA-ATAAAAGTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAAATTTTCAAAA-GGACATAGTTTTTTTATGAACTCTA--ATAAGAAC-AGTGTTCTG-GTTAGTTCAAAGTATAAACATATGTTCC-A-AAATTA--TTGTTTAACTTTTCAGCAATGTCATTG--T------A-CTTATGAAACTCTATGTAATTCACTC-T--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATATATAAAGCTATATAGCTT-GATAAAGAGA-TTGTACGGGCCC
gi|11 : AGCTTGATTTAGCTATTTTTAAACCTTTCA-TCAAATTAA-TTTCTACAAGCATAAG-A
gi|15 : GGTCCAGTG--CAATCTCTTTATCTAGCTACATAGCTTTAT
gi|2 : AGGTCCGGCA--CAATCT--TTATTTAGCT-TATAGCTTTATCA--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNACCTTTCA-TCAATTAAA-TTTCTACAAGCAGAAACAGTCGAATTT-ACTGA-----GTGAA-CAC-ATTT---------ATAACTTGTGCATACCATAG-ACAA-TGTGTAAACAAGAAAAACTTTCTT-TAA--------------C---TAGGTCCTTT-GAAAG-AAATTGGATTTTTAATATTTGCAGACACCTAAGATCAACCGAGTTGTCAAACCAACAGTTATCTAAATTACAGTATACAGAAAAAAGTCAA
gi|2 : cTTTTCAAAA-GGACGTAATTTGT-CATG-ACTCTATGATATGAACCAGT-TTCTGCGTTAGTTCAAAGCATGAA-ACATGTTCA-ATAAATTGATTTGCCAGACTTTTTAGCAATGGCATTG--TA-----A-GTTATAAAA-CCAATCAAGTTCACTCGTA--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG-ATAAGCCTA-ATAGCTCAAATAAAGAGA-TTGTGCCGGACCagaatgatcaagtgaataatggattgtcaatcatgatacccattgtttggaagtcatcattactttaacatgcttcaacgcaccaaggatagtggacagttgtgggaaaaaaggaattctttttggcatcaacatttttcaaaaggacgtaatttgtcatgactctatgatatgaaccagtttctgcgttagttcaaagcatgaaacatgttcaataaattgatttgccagactttttagcaatggcattgtaagttataaaaccaatcaagttcactcgtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgataagcctaatagctcaaataaagagattgtgccggacc
gi|3 : caggtccggcacaatctttatttagcttatagctttatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctttcatcaattaaatttctacaagcagaaacagtcgaatttactgagtgaacacatttataacttgtgcataccatagacaatgtgtaaacaagaaaaactttctttaactaggtcctttgaaagaaattggatttttaatatttgcagacacctaagatcaaccgagttgtcaaaccaacagttatctaaattacagtatacagaaaaaagtcaaagaatgatcaagtgaataatggattgtcaatcatgatacccattgtttggaagtcatcattactttaacatgcttcaacgcaccaaggatagtggacagttgtgggaaaaaaggaattctttttggcatcaacatGGTCCAGTAAACAATCTCTTTAT-TAGCTATA-AGCTTTATCC--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NAACCTTTCACTCAAATTAACTTTCTACACCCAGAAA-AGTCGCATTTCACTGA-----GTGAA-TACCATTT--------CAT-ATTTATGT----CTTAGAACAGCTATGGAAACAAGAAAAACTTT-TTGAAA--------------C---TAGGT--CTTAAGAAGAAAATTGGA-TTTTAA-ATTTGCAAAC-CCTAAGATC-ACTGAGTTGTC-ACCGAACAGTTATCTAAAATACAGGCTACA-ATAAAAGTCAAT
gi|3 : AATTTTCAAAAAGGACGTAGTTTTTTCATG-A-TCTA--ATAAGG-C-AGTGTTC-G-GTTAGTTCAAAGTATAAA-ACATGTCCCAA-AAATTAT-TTGTTCGAC-TTATA--AATGTCATTG--T------ACTTTATGAAACTCTATGTAATTCAC-C-TAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAT-----AAG-TATATAGCTT-AGAAAAGAGATTTGTACTGGAgatggatcaaatgaaaatagatggattgtcaatcatgaatcccttgtgaatcatcttacttttaacacgctgtccaacgcacacgggtagaggatacagttatgagaacaaaaggaattctttgttgctggaattttcaaaaaggacgtagttttttcatgatctaataaggcagtgttcggttagttcaaagtataaaacatgtcccaaaaattatttgttcgacttataaatgtcattgtactttatgaaactctatgtaattcacctaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggataagtatatagcttagaaaagagatttgtactgga
gi|4 : ggtccagtaaacaatctctttattagctataagctttatccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacctttcactcaaattaactttctacacccagaaaagtcgcatttcactgagtgaataccatttcatatttatgtcttagaacagctatggaaacaagaaaaactttttgaaactaggtcttaagaagaaaattggattttaaatttgcaaaccctaagatcactgagttgtcaccgaacagttatctaaaatacaggctacaataaaagtcaatgatggatcaaatgaaaatagatggattgtcaatcatgaatcccttgtgaatcatcttacttttaacacgctgtccaacgcacacgggtagaggatacagttatgagaacaaaaggaattctttgttgctggAAGTCCAGCA--CAATCTCTTT---TAGT-------CTTTATC-----------TAGCTATATATAGCTTTATCAAACTTGATTTAGCTATTTC-AAACCTCTCA-TCAAAATAA-TTTCTAAAAGCAGAAA-AGTCGAATTTCACTCATCGTCGCAAACCACGGTTTTTAGTCCACAT-ACGTNNNN-N-NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNN-NN-NAAGCACCCGTGGGTCAC---TAGGTCCTT---AAAG-AAATTGGA-TGTTAA-ATTTGCAGATGTCTAGGATC-ATTGAGTTGTC-AACCAACAGTTATCTAAAATACAGGATACA---AAAAATCAA
gi|4 : cAAA-GGACATCATTTTGTCATGCACTCTA--ATTAGAAC-GGTGATCTG-GTTAGTTCAAAGCATAAA--CATGTTCC-A-AAATTA--TTGTCAGACTTTTTAGCAATGCCATTGACTTGTATAA-TTTATGAAACCTGATCTAATTCACagatgatcaagtgaataatggattatcaattttgaatccccattgtgaaatcatcatactttaacatgnaatttagaagggtcaagaaaattagatgtgtgaaataaggcaatanaaaggacatcattttgtcatgcactctaattagaacggtgatctggttagttcaaagcataaacatgttccaaaattattgtcagactttttagcaatgccattgacttgtataatttatgaaacctgatctaattcac
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CTTTTAGTATAGATCTATTAATGTAAGTCTTTAAGTTAATCAATCATTAGTTTGAAAGCTAGTTTGAAAGCTTAATTAAATCTGTATTCAAAAGTTAACAAGTCGTCAAATGTCTAGACAGTTGAAGGCATCG
Unaligned ( gi|6 ): TCGCAAACCACGGTTTGAGTCCACATACGTTGTCTCAAACGTGATGATGGAGAGAATCGATAAGAAGCACCCGTGGGTCACCGACAGA
Unaligned ( gi|7 ): CCACGGTTTGAGTCCACATACGTTCTCTCAAACGTTTGATGATGGAGAAATCGATAAGAAGCACCCGTGGGTCACCGACA
Unaligned ( gi|8 ): GCAAACCAGGGTTTTGAGTCCACATACGTTTCGATGATGAAGAGAATCGATAAGAAGCACCCGTGGGTCACCGACAAT
Unaligned ( gi|9 ): ATACGTTGCTGGATGATGGAGAGAATCGATAAGAAGCACCCGTGGGTCACCGACGATA
Unaligned ( gi|10 ): TTGAGTCCACATACGTGATGGAGAGAATCGTTAAAAAGCACCCGCCGGTCACCGACGA
Unaligned ( gi|12 ): GATGATGGGGAATATCGATAAGAAGCACCCGTGGGCCACCGACGAT
Unaligned ( gi|13 ): GATGCGGGAGGATCGATATGACGCACCCGTGGGTCACCGCACGA
Unaligned ( gi|14 ): GAAGCAAATAAAATGTGAATGATCAAAACGCATCGGTCGC
Unaligned ( gi|16 ): AATCGATAAGAAGCACCCGCCGGTCACCGAAGAT
Unaligned ( gi|17 ): GATAAGAAGCACCCGTGGGTCACCAACGATGCA
Unaligned ( gi|18 ): AGAGCAAATTAAAATTGAATGTCAAAACGCATG
Unaligned ( gi|19 ): GTCGTCGCAAACCACGGTTTTGAGTCCACATA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 55555555555 22222 1 2 333333333 1 222 11 1 1 666666666666666666 111 1 1 1 1 1 1 111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 2 11 1 1 11 111 22 444444444444 88888888888888888888888888888888888888888888888888888888888 11 1 1
lowQualScore : 11 0 8 66666 88888888888 8 8 8 0 8 2 55555 2 0 0 888888888 0 555 5 11 0 0 666666666666666666 2 333 0 0 0 0 0 4 0 1 666 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 3 0 2 33 3 0 2 3 0 33 111 33 1 3 2 0 555555555555 2 1 1 7 44444444444444444444444444444444444444444444444444444444444 66 7 3 3 3
lowQualScore : .. . . ..... ........... . . . . . . ..... . . . ......... . ... . .. . . .................. . ... . . . . . . . . ... .................................................................................................................................... . . . . .. . . . . . .. ... .. . . . . ............ . . . . ........................................................... .. . . . .
lowQualScore : 00 8 2 66666 55555555555 0 0 0 6 0 5 00000 0 0 0 888888888 0 888 8 00 0 0 222222222222222222 5 222 0 0 0 5 0 2 0 0 888 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 2 0 5 88 2 0 5 2 0 22 000 88 0 2 5 8 222222222222 5 0 0 3 00000000000000000000000000000000000000000000000000000000000 00 3 3 3 7
consensus : AGGTCCAGTA--CAATCTCTTTATCTAGCTATATAGCTTTATCC--NNNNNNNNTAGCTATATATAGCTTTATCAAGCTTGATTTAGCTATTTC-AAACCTTTCA-TCAAATTAA-TTTCTACAAGCAGAAA-AGTCGAATTTCACTGA-----GCGAA-CAC-ATTT--------CAT-ACTTATGC-T-CCTTAGAACAN-TATGGAAACAAGAAAAACTTT-TT-AAA--------------C---TAGGTCCTTTAAAAAG-AAATTGGA-TTTTAA-ATTTGCAGACGCCTAGGATC-ACCGAGTTGTC-AACCAACAGTTATCTAAAATACAGGNTACA-ATAAAAGTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAAATTTTCAAAA-GGACGTAGTTTTTTCATG-ACTCTA--ATAAGAAC-AGTGTTCTG-GTTAGTTCAAAGCATAAA-ACATGTTCC-A-AAATTA--TTGTCNGACTTTTTAGCAATGTCATTG--T------A-TTTATGAAACCCNATNTAATTCACTC-TAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATG-ATAAG-CTATATAGCTT-AATAAAGAGA-TTGTACCGGACC
Reference ( family-567 ) : AGGTCCAGTA--CAATCTCTTTATCTAGCTATATAGCTTTATCC--NNNNNNNNTAGCTATATATAGCTTTATCAAGCTTGATTTAGCTATTTC-AAACCTTTCA-TCAAATTAA-TTTCTACAAGCAGAAA-AGTCGAATTTCACTGA-----GCGAA-CAC-ATTT--------CAT-ACTTATGC-T-CCTTAGAACAN-TATGGAAACAAGAAAAACTTT-TT-AAA--------------C---TAGGTCCTTTAAAAAG-AAATTGGA-TTTTAA-ATTTGCAGACGCCTAGGATC-ACCGAGTTGTC-AACCAACAGTTATCTAAAATACAGGNTACA-ATAAAAGTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAAATTTTCAAAA-GGACGTAGTTTTTTCATG-ACTCTA--ATAAGAAC-AGTGTTCTG-GTTAGTTCAAAGCATAAA-ACATGTTCC-A-AAATTA--TTGTCNGACTTTTTAGCAATGTCATTG--T------A-TTTATGAAACCCNATNTAATTCACTC-TANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATG-ATAAAGCTATATAGCTT-AATAAAGAGA-TTGTACCGGACC
gi|1 : AGGTCCAGTA--CAATCTCTTTATCTAGCTATATAGCTTTATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-AAACCTTTCA-TCAAATTAA-TTTCTACACCCAGAAA-AGTCGAATTTCAATGA-----GTGAA-TAC-ATTT--------CAT-ACTTATGC-T-CCTTAGAACAC-TATGGAAGCAAGAAAAACTTT-TT-AAA--------------CTGGTAGGTCCTTTAAAAAG-AAATTGGA-TTTTAA-ATTTGCAGATATCTAGGATC-ATGGAGTTGTC-AACCAACAGTTATCTAAAATACAGGCTACA-ATAAAAGTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAAATTTTCAAAA-GGACATAGTTTTTTTATGAACTCTA--ATAAGAAC-AGTGTTCTG-GTTAGTTCAAAGTATAAACATATGTTCC-A-AAATTA--TTGTTTAACTTTTCAGCAATGTCATTG--T------A-CTTATGAAACTCTATGTAATTCACTC-T-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATATATAAAGCTATATAGCTT-GATAAAGAGA-TTGTACGGGCCC
gi|11 : AGCTTGATTTAGCTATTTTTAAACCTTTCA-TCAAATTAA-TTTCTACAAGCATAAG-A
gi|15 : GGTCCAGTG--CAATCTCTTTATCTAGCTACATAGCTTTAT
gi|2 : AGGTCCGGCA--CAATCT--TTATTTAGCT-TATAGCTTTATCA--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNACCTTTCA-TCAATTAAA-TTTCTACAAGCAGAAACAGTCGAATTT-ACTGA-----GTGAA-CAC-ATTT---------ATAACTTGTGCATACCATAG-ACAA-TGTGTAAACAAGAAAAACTTTCTT-TAA--------------C---TAGGTCCTTT-GAAAG-AAATTGGATTTTTAATATTTGCAGACACCTAAGATCAACCGAGTTGTCAAACCAACAGTTATCTAAATTACAGTATACAGAAAAAAGTCAA
gi|2 : cTTTTCAAAA-GGACGTAATTTGT-CATG-ACTCTATGATATGAACCAGT-TTCTGCGTTAGTTCAAAGCATGAA-ACATGTTCA-ATAAATTGATTTGCCAGACTTTTTAGCAATGGCATTG--TA-----A-GTTATAAAA-CCAATCAAGTTCACTCGTA-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG-ATAAGCCTA-ATAGCTCAAATAAAGAGA-TTGTGCCGGACCagaatgatcaagtgaataatggattgtcaatcatgatacccattgtttggaagtcatcattactttaacatgcttcaacgcaccaaggatagtggacagttgtgggaaaaaaggaattctttttggcatcaacatttttcaaaaggacgtaatttgtcatgactctatgatatgaaccagtttctgcgttagttcaaagcatgaaacatgttcaataaattgatttgccagactttttagcaatggcattgtaagttataaaaccaatcaagttcactcgtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgataagcctaatagctcaaataaagagattgtgccggacc
gi|3 : caggtccggcacaatctttatttagcttatagctttatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctttcatcaattaaatttctacaagcagaaacagtcgaatttactgagtgaacacatttataacttgtgcataccatagacaatgtgtaaacaagaaaaactttctttaactaggtcctttgaaagaaattggatttttaatatttgcagacacctaagatcaaccgagttgtcaaaccaacagttatctaaattacagtatacagaaaaaagtcaaagaatgatcaagtgaataatggattgtcaatcatgatacccattgtttggaagtcatcattactttaacatgcttcaacgcaccaaggatagtggacagttgtgggaaaaaaggaattctttttggcatcaacatGGTCCAGTAAACAATCTCTTTAT-TAGCTATA-AGCTTTATCC--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NAACCTTTCACTCAAATTAACTTTCTACACCCAGAAA-AGTCGCATTTCACTGA-----GTGAA-TACCATTT--------CAT-ATTTATGT----CTTAGAACAGCTATGGAAACAAGAAAAACTTT-TTGAAA--------------C---TAGGTC--TTAAGAAGAAAATTGGA-TTTTAA-ATTTGCAAAC-CCTAAGATC-ACTGAGTTGTC-ACCGAACAGTTATCTAAAATACAGGCTACA-ATAAAAGTCAAT
gi|3 : AATTTTCAAAAAGGACGTAGTTTTTTCATG-A-TCTA--ATAAGG-C-AGTGTTC-G-GTTAGTTCAAAGTATAAA-ACATGTCCCAA-AAATTAT-TTGTTCGAC-TTATA--AATGTCATTG--T------ACTTTATGAAACTCTATGTAATTCAC-C-TAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG--G-ATAAG--TATATAGCTT-AGAAAAGAGATTTGTACTGGAgatggatcaaatgaaaatagatggattgtcaatcatgaatcccttgtgaatcatcttacttttaacacgctgtccaacgcacacgggtagaggatacagttatgagaacaaaaggaattctttgttgctggaattttcaaaaaggacgtagttttttcatgatctaataaggcagtgttcggttagttcaaagtataaaacatgtcccaaaaattatttgttcgacttataaatgtcattgtactttatgaaactctatgtaattcacctaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggataagtatatagcttagaaaagagatttgtactgga
gi|4 : ggtccagtaaacaatctctttattagctataagctttatccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacctttcactcaaattaactttctacacccagaaaagtcgcatttcactgagtgaataccatttcatatttatgtcttagaacagctatggaaacaagaaaaactttttgaaactaggtcttaagaagaaaattggattttaaatttgcaaaccctaagatcactgagttgtcaccgaacagttatctaaaatacaggctacaataaaagtcaatgatggatcaaatgaaaatagatggattgtcaatcatgaatcccttgtgaatcatcttacttttaacacgctgtccaacgcacacgggtagaggatacagttatgagaacaaaaggaattctttgttgctggAAGTCCAGCA--CAATCTCTTT---TAGT-------CTTTATC-----------TAGCTATATATAGCTTTATCAAACTTGATTTAGCTATTTC-AAACCTCTCA-TCAAAATAA-TTTCTAAAAGCAGAAA-AGTCGAATTTCACTCATCGTCGCAAACCACGGTTTTTAGTCCACAT-ACGTNNNN-N-NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNN-NN-NAAGCACCCGTGGGTCAC---TAGGTCCTT---AAAG-AAATTGGA-TGTTAA-ATTTGCAGATGTCTAGGATC-ATTGAGTTGTC-AACCAACAGTTATCTAAAATACAGGATACA---AAAAATCAA
gi|4 : cAAA-GGACATCATTTTGTCATGCACTCTA--ATTAGAAC-GGTGATCTG-GTTAGTTCAAAGCATAAA--CATGTTCC-A-AAATTA--TTGTCAGACTTTTTAGCAATGCCATTGACTTGTATAA-TTTATGAAACCTGATCTAATTCACagatgatcaagtgaataatggattatcaattttgaatccccattgtgaaatcatcatactttaacatgnaatttagaagggtcaagaaaattagatgtgtgaaataaggcaatanaaaggacatcattttgtcatgcactctaattagaacggtgatctggttagttcaaagcataaacatgttccaaaattattgtcagactttttagcaatgccattgacttgtataatttatgaaacctgatctaattcac
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CTTTTAGTATAGATCTATTAATGTAAGTCTTTAAGTTAATCAATCATTAGTTTGAAAGCTAGTTTGAAAGCTTAATTAAATCTGTATTCAAAAGTTAACAAGTCGTCAAATGTCTAGACAGTTGAAGGCATCG
Unaligned ( gi|6 ): TCGCAAACCACGGTTTGAGTCCACATACGTTGTCTCAAACGTGATGATGGAGAGAATCGATAAGAAGCACCCGTGGGTCACCGACAGA
Unaligned ( gi|7 ): CCACGGTTTGAGTCCACATACGTTCTCTCAAACGTTTGATGATGGAGAAATCGATAAGAAGCACCCGTGGGTCACCGACA
Unaligned ( gi|8 ): GCAAACCAGGGTTTTGAGTCCACATACGTTTCGATGATGAAGAGAATCGATAAGAAGCACCCGTGGGTCACCGACAAT
Unaligned ( gi|9 ): ATACGTTGCTGGATGATGGAGAGAATCGATAAGAAGCACCCGTGGGTCACCGACGATA
Unaligned ( gi|10 ): TTGAGTCCACATACGTGATGGAGAGAATCGTTAAAAAGCACCCGCCGGTCACCGACGA
Unaligned ( gi|12 ): GATGATGGGGAATATCGATAAGAAGCACCCGTGGGCCACCGACGAT
Unaligned ( gi|13 ): GATGCGGGAGGATCGATATGACGCACCCGTGGGTCACCGCACGA
Unaligned ( gi|14 ): GAAGCAAATAAAATGTGAATGATCAAAACGCATCGGTCGC
Unaligned ( gi|16 ): AATCGATAAGAAGCACCCGCCGGTCACCGAAGAT
Unaligned ( gi|17 ): GATAAGAAGCACCCGTGGGTCACCAACGATGCA
Unaligned ( gi|18 ): AGAGCAAATTAAAATTGAATGTCAAAACGCATG
Unaligned ( gi|19 ): GTCGTCGCAAACCACGGTTTTGAGTCCACATA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 55555555555 22222 1 2 333333333 1 222 11 1 1 666666666666666666 111 1 1 1 1 1 1 111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 2 11 1 1 11 111 22 444444444444 666666666666666666666666666666666666666666666666666666666 1 22 1 1
lowQualScore : 11 0 8 66666 88888888888 8 8 8 0 8 2 55555 2 0 0 888888888 0 555 5 11 0 0 666666666666666666 2 333 0 0 0 0 0 4 0 1 666 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 3 0 2 33 3 0 2 3 0 33 111 33 1 3 2 0 555555555555 2 1 1 7 888888888888888888888888888888888888888888888888888888888 3 00 7 3 3 3
lowQualScore : .. . . ..... ........... . . . . . . ..... . . . ......... . ... . .. . . .................. . ... . . . . . . . . ... .................................................................................................................................... . . . . .. . . . . . .. ... .. . . . . ............ . . . . ......................................................... . .. . . . .
lowQualScore : 00 8 2 66666 55555555555 0 0 0 6 0 5 00000 0 0 0 888888888 0 888 8 00 0 0 222222222222222222 5 222 0 0 0 5 0 2 0 0 888 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 2 0 5 88 2 0 5 2 0 22 000 88 0 2 5 8 222222222222 5 0 0 3 777777777777777777777777777777777777777777777777777777777 3 00 3 3 3 7
consensus : AGGTCCAGTA--CAATCTCTTTATCTAGCTATATAGCTTTATCC--NNNNNNNNTAGCTATATATAGCTTTATCAAGCTTGATTTAGCTATTTC-AAACCTTTCA-TCAAATTAA-TTTCTACAAGCAGAAA-AGTCGAATTTCACTGA-----GCGAA-CAC-ATTT--------CAT-ACTTATGC-T-CCTTAGAACAN-TATGGAAACAAGAAAAACTTT-TT-AAA--------------C---TAGGTCCTTTAAAAAG-AAATTGGA-TTTTAA-ATTTGCAGACGCCTAGGATC-ACCGAGTTGTC-AACCAACAGTTATCTAAAATACAGGNTACA-ATAAAAGTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAAATTTTCAAAA-GGACGTAGTTTTTTCATG-ACTCTA--ATAAGAAC-AGTGTTCTG-GTTAGTTCAAAGCATAAA-ACATGTTCC-A-AAATTA--TTGTCNGACTTTTTAGCAATGTCATTG--T------A-TTTATGAAACCCNATNTAATTCACTCT-ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATG-AT-AAG-CTATATAGCTT-AATAAAGAGA-TTGTACCGGACC
Reference ( family-567 ) : AGGTCCAGTA--CAATCTCTTTATCTAGCTATATAGCTTTATCC--NNNNNNNNTAGCTATATATAGCTTTATCAAGCTTGATTTAGCTATTTC-AAACCTTTCA-TCAAATTAA-TTTCTACAAGCAGAAA-AGTCGAATTTCACTGA-----GCGAA-CAC-ATTT--------CAT-ACTTATGC-T-CCTTAGAACAN-TATGGAAACAAGAAAAACTTT-TT-AAA--------------C---TAGGTCCTTTAAAAAG-AAATTGGA-TTTTAA-ATTTGCAGACGCCTAGGATC-ACCGAGTTGTC-AACCAACAGTTATCTAAAATACAGGNTACA-ATAAAAGTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAAATTTTCAAAA-GGACGTAGTTTTTTCATG-ACTCTA--ATAAGAAC-AGTGTTCTG-GTTAGTTCAAAGCATAAA-ACATGTTCC-A-AAATTA--TTGTCNGACTTTTTAGCAATGTCATTG--T------A-TTTATGAAACCCNATNTAATTCACTCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATG-AT-AAG-CTATATAGCTT-AATAAAGAGA-TTGTACCGGACC
gi|1 : AGGTCCAGTA--CAATCTCTTTATCTAGCTATATAGCTTTATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-AAACCTTTCA-TCAAATTAA-TTTCTACACCCAGAAA-AGTCGAATTTCAATGA-----GTGAA-TAC-ATTT--------CAT-ACTTATGC-T-CCTTAGAACAC-TATGGAAGCAAGAAAAACTTT-TT-AAA--------------CTGGTAGGTCCTTTAAAAAG-AAATTGGA-TTTTAA-ATTTGCAGATATCTAGGATC-ATGGAGTTGTC-AACCAACAGTTATCTAAAATACAGGCTACA-ATAAAAGTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAAATTTTCAAAA-GGACATAGTTTTTTTATGAACTCTA--ATAAGAAC-AGTGTTCTG-GTTAGTTCAAAGTATAAACATATGTTCC-A-AAATTA--TTGTTTAACTTTTCAGCAATGTCATTG--T------A-CTTATGAAACTCTATGTAATTCACTCT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATATATAAAG-CTATATAGCTT-GATAAAGAGA-TTGTACGGGCCC
gi|11 : AGCTTGATTTAGCTATTTTTAAACCTTTCA-TCAAATTAA-TTTCTACAAGCATAAG-A
gi|15 : GGTCCAGTG--CAATCTCTTTATCTAGCTACATAGCTTTAT
gi|2 : AGGTCCGGCA--CAATCT--TTATTTAGCT-TATAGCTTTATCA--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNACCTTTCA-TCAATTAAA-TTTCTACAAGCAGAAACAGTCGAATTT-ACTGA-----GTGAA-CAC-ATTT---------ATAACTTGTGCATACCATAG-ACAA-TGTGTAAACAAGAAAAACTTTCTT-TAA--------------C---TAGGTCCTTT-GAAAG-AAATTGGATTTTTAATATTTGCAGACACCTAAGATCAACCGAGTTGTCAAACCAACAGTTATCTAAATTACAGTATACAGAAAAAAGTCAA
gi|2 : cTTTTCAAAA-GGACGTAATTTGT-CATG-ACTCTATGATATGAACCAGT-TTCTGCGTTAGTTCAAAGCATGAA-ACATGTTCA-ATAAATTGATTTGCCAGACTTTTTAGCAATGGCATTG--TA-----A-GTTATAAAA-CCAATCAAGTTCACTCGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG-AT-AAGCCTA-ATAGCTCAAATAAAGAGA-TTGTGCCGGACCagaatgatcaagtgaataatggattgtcaatcatgatacccattgtttggaagtcatcattactttaacatgcttcaacgcaccaaggatagtggacagttgtgggaaaaaaggaattctttttggcatcaacatttttcaaaaggacgtaatttgtcatgactctatgatatgaaccagtttctgcgttagttcaaagcatgaaacatgttcaataaattgatttgccagactttttagcaatggcattgtaagttataaaaccaatcaagttcactcgtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgataagcctaatagctcaaataaagagattgtgccggacc
gi|3 : caggtccggcacaatctttatttagcttatagctttatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctttcatcaattaaatttctacaagcagaaacagtcgaatttactgagtgaacacatttataacttgtgcataccatagacaatgtgtaaacaagaaaaactttctttaactaggtcctttgaaagaaattggatttttaatatttgcagacacctaagatcaaccgagttgtcaaaccaacagttatctaaattacagtatacagaaaaaagtcaaagaatgatcaagtgaataatggattgtcaatcatgatacccattgtttggaagtcatcattactttaacatgcttcaacgcaccaaggatagtggacagttgtgggaaaaaaggaattctttttggcatcaacatGGTCCAGTAAACAATCTCTTTAT-TAGCTATA-AGCTTTATCC--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NAACCTTTCACTCAAATTAACTTTCTACACCCAGAAA-AGTCGCATTTCACTGA-----GTGAA-TACCATTT--------CAT-ATTTATGT----CTTAGAACAGCTATGGAAACAAGAAAAACTTT-TTGAAA--------------C---TAGGTC--TTAAGAAGAAAATTGGA-TTTTAA-ATTTGCAAAC-CCTAAGATC-ACTGAGTTGTC-ACCGAACAGTTATCTAAAATACAGGCTACA-ATAAAAGTCAAT
gi|3 : AATTTTCAAAAAGGACGTAGTTTTTTCATG-A-TCTA--ATAAGG-C-AGTGTTC-G-GTTAGTTCAAAGTATAAA-ACATGTCCCAA-AAATTAT-TTGTTCGAC-TTATA--AATGTCATTG--T------ACTTTATGAAACTCTATGTAATTCAC-CTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG--G-AT-AAG--TATATAGCTT-AGAAAAGAGATTTGTACTGGAgatggatcaaatgaaaatagatggattgtcaatcatgaatcccttgtgaatcatcttacttttaacacgctgtccaacgcacacgggtagaggatacagttatgagaacaaaaggaattctttgttgctggaattttcaaaaaggacgtagttttttcatgatctaataaggcagtgttcggttagttcaaagtataaaacatgtcccaaaaattatttgttcgacttataaatgtcattgtactttatgaaactctatgtaattcacctaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggataagtatatagcttagaaaagagatttgtactgga
gi|4 : ggtccagtaaacaatctctttattagctataagctttatccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacctttcactcaaattaactttctacacccagaaaagtcgcatttcactgagtgaataccatttcatatttatgtcttagaacagctatggaaacaagaaaaactttttgaaactaggtcttaagaagaaaattggattttaaatttgcaaaccctaagatcactgagttgtcaccgaacagttatctaaaatacaggctacaataaaagtcaatgatggatcaaatgaaaatagatggattgtcaatcatgaatcccttgtgaatcatcttacttttaacacgctgtccaacgcacacgggtagaggatacagttatgagaacaaaaggaattctttgttgctggAAGTCCAGCA--CAATCTCTTT---TAGT-------CTTTATC-----------TAGCTATATATAGCTTTATCAAACTTGATTTAGCTATTTC-AAACCTCTCA-TCAAAATAA-TTTCTAAAAGCAGAAA-AGTCGAATTTCACTCATCGTCGCAAACCACGGTTTTTAGTCCACAT-ACGTNNNN-N-NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNN-NN-NAAGCACCCGTGGGTCAC---TAGGTCCTT---AAAG-AAATTGGA-TGTTAA-ATTTGCAGATGTCTAGGATC-ATTGAGTTGTC-AACCAACAGTTATCTAAAATACAGGATACA---AAAAATCAA
gi|4 : cAAA-GGACATCATTTTGTCATGCACTCTA--ATTAGAAC-GGTGATCTG-GTTAGTTCAAAGCATAAA--CATGTTCC-A-AAATTA--TTGTCAGACTTTTTAGCAATGCCATTGACTTGTATAA-TTTATGAAACCTGATCTAATTCACagatgatcaagtgaataatggattatcaattttgaatccccattgtgaaatcatcatactttaacatgnaatttagaagggtcaagaaaattagatgtgtgaaataaggcaatanaaaggacatcattttgtcatgcactctaattagaacggtgatctggttagttcaaagcataaacatgttccaaaattattgtcagactttttagcaatgccattgacttgtataatttatgaaacctgatctaattcac
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CTTTTAGTATAGATCTATTAATGTAAGTCTTTAAGTTAATCAATCATTAGTTTGAAAGCTAGTTTGAAAGCTTAATTAAATCTGTATTCAAAAGTTAACAAGTCGTCAAATGTCTAGACAGTTGAAGGCATCG
Unaligned ( gi|6 ): TCGCAAACCACGGTTTGAGTCCACATACGTTGTCTCAAACGTGATGATGGAGAGAATCGATAAGAAGCACCCGTGGGTCACCGACAGA
Unaligned ( gi|7 ): CCACGGTTTGAGTCCACATACGTTCTCTCAAACGTTTGATGATGGAGAAATCGATAAGAAGCACCCGTGGGTCACCGACA
Unaligned ( gi|8 ): GCAAACCAGGGTTTTGAGTCCACATACGTTTCGATGATGAAGAGAATCGATAAGAAGCACCCGTGGGTCACCGACAAT
Unaligned ( gi|9 ): ATACGTTGCTGGATGATGGAGAGAATCGATAAGAAGCACCCGTGGGTCACCGACGATA
Unaligned ( gi|10 ): TTGAGTCCACATACGTGATGGAGAGAATCGTTAAAAAGCACCCGCCGGTCACCGACGA
Unaligned ( gi|12 ): GATGATGGGGAATATCGATAAGAAGCACCCGTGGGCCACCGACGAT
Unaligned ( gi|13 ): GATGCGGGAGGATCGATATGACGCACCCGTGGGTCACCGCACGA
Unaligned ( gi|14 ): GAAGCAAATAAAATGTGAATGATCAAAACGCATCGGTCGC
Unaligned ( gi|16 ): AATCGATAAGAAGCACCCGCCGGTCACCGAAGAT
Unaligned ( gi|17 ): GATAAGAAGCACCCGTGGGTCACCAACGATGCA
Unaligned ( gi|18 ): AGAGCAAATTAAAATTGAATGTCAAAACGCATG
Unaligned ( gi|19 ): GTCGTCGCAAACCACGGTTTTGAGTCCACATA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 55555555555 22222 1 2 333333333 1 222 11 1 1 666666666666666666 111 1 1 1 1 1 1 111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 2 11 1 1 11 111 22 444444444444 1 5555555555555555555555555555555555555555555555555555555 1 22 1 1
lowQualScore : 11 0 8 66666 88888888888 8 8 8 0 8 2 55555 2 0 0 888888888 0 555 5 11 0 0 666666666666666666 2 333 0 0 0 0 0 4 0 1 666 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 3 0 2 33 3 0 2 3 0 33 111 33 1 3 2 0 555555555555 2 1 1 7 3 9999999999999999999999999999999999999999999999999999999 3 00 7 3 3 3
lowQualScore : .. . . ..... ........... . . . . . . ..... . . . ......... . ... . .. . . .................. . ... . . . . . . . . ... .................................................................................................................................... . . . . .. . . . . . .. ... .. . . . . ............ . . . . . ....................................................... . .. . . . .
lowQualScore : 00 8 2 66666 55555555555 0 0 0 6 0 5 00000 0 0 0 888888888 0 888 8 00 0 0 222222222222222222 5 222 0 0 0 5 0 2 0 0 888 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 2 0 5 88 2 0 5 2 0 22 000 88 0 2 5 8 222222222222 5 0 0 3 3 0000000000000000000000000000000000000000000000000000000 3 00 3 3 3 7
consensus : AGGTCCAGTA--CAATCTCTTTATCTAGCTATATAGCTTTATCC--NNNNNNNNTAGCTATATATAGCTTTATCAAGCTTGATTTAGCTATTTC-AAACCTTTCA-TCAAATTAA-TTTCTACAAGCAGAAA-AGTCGAATTTCACTGA-----GCGAA-CAC-ATTT--------CAT-ACTTATGC-T-CCTTAGAACAN-TATGGAAACAAGAAAAACTTT-TT-AAA--------------C---TAGGTCCTTTAAAAAG-AAATTGGA-TTTTAA-ATTTGCAGACGCCTAGGATC-ACCGAGTTGTC-AACCAACAGTTATCTAAAATACAGGNTACA-ATAAAAGTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAAATTTTCAAAA-GGACGTAGTTTTTTCATG-ACTCTA--ATAAGAAC-AGTGTTCTG-GTTAGTTCAAAGCATAAA-ACATGTTCC-A-AAATTA--TTGTCNGACTTTTTAGCAATGTCATTG--T------A-TTTATGAAACCCNATNTAATTCACTC-TAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTG-AT-AAG-CTATATAGCTT-AATAAAGAGA-TTGTACCGGACC
Reference ( family-567 ) : AGGTCCAGTA--CAATCTCTTTATCTAGCTATATAGCTTTATCC--NNNNNNNNTAGCTATATATAGCTTTATCAAGCTTGATTTAGCTATTTC-AAACCTTTCA-TCAAATTAA-TTTCTACAAGCAGAAA-AGTCGAATTTCACTGA-----GCGAA-CAC-ATTT--------CAT-ACTTATGC-T-CCTTAGAACAN-TATGGAAACAAGAAAAACTTT-TT-AAA--------------C---TAGGTCCTTTAAAAAG-AAATTGGA-TTTTAA-ATTTGCAGACGCCTAGGATC-ACCGAGTTGTC-AACCAACAGTTATCTAAAATACAGGNTACA-ATAAAAGTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAAATTTTCAAAA-GGACGTAGTTTTTTCATG-ACTCTA--ATAAGAAC-AGTGTTCTG-GTTAGTTCAAAGCATAAA-ACATGTTCC-A-AAATTA--TTGTCNGACTTTTTAGCAATGTCATTG--T------A-TTTATGAAACCCNATNTAATTCACTC-TANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATG-AT-AAG-CTATATAGCTT-AATAAAGAGA-TTGTACCGGACC
gi|1 : AGGTCCAGTA--CAATCTCTTTATCTAGCTATATAGCTTTATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-AAACCTTTCA-TCAAATTAA-TTTCTACACCCAGAAA-AGTCGAATTTCAATGA-----GTGAA-TAC-ATTT--------CAT-ACTTATGC-T-CCTTAGAACAC-TATGGAAGCAAGAAAAACTTT-TT-AAA--------------CTGGTAGGTCCTTTAAAAAG-AAATTGGA-TTTTAA-ATTTGCAGATATCTAGGATC-ATGGAGTTGTC-AACCAACAGTTATCTAAAATACAGGCTACA-ATAAAAGTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAAATTTTCAAAA-GGACATAGTTTTTTTATGAACTCTA--ATAAGAAC-AGTGTTCTG-GTTAGTTCAAAGTATAAACATATGTTCC-A-AAATTA--TTGTTTAACTTTTCAGCAATGTCATTG--T------A-CTTATGAAACTCTATGTAATTCACTC-TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATATATAAAG-CTATATAGCTT-GATAAAGAGA-TTGTACGGGCCC
gi|11 : AGCTTGATTTAGCTATTTTTAAACCTTTCA-TCAAATTAA-TTTCTACAAGCATAAG-A
gi|15 : GGTCCAGTG--CAATCTCTTTATCTAGCTACATAGCTTTAT
gi|2 : AGGTCCGGCA--CAATCT--TTATTTAGCT-TATAGCTTTATCA--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNACCTTTCA-TCAATTAAA-TTTCTACAAGCAGAAACAGTCGAATTT-ACTGA-----GTGAA-CAC-ATTT---------ATAACTTGTGCATACCATAG-ACAA-TGTGTAAACAAGAAAAACTTTCTT-TAA--------------C---TAGGTCCTTT-GAAAG-AAATTGGATTTTTAATATTTGCAGACACCTAAGATCAACCGAGTTGTCAAACCAACAGTTATCTAAATTACAGTATACAGAAAAAAGTCAA
gi|2 : cTTTTCAAAA-GGACGTAATTTGT-CATG-ACTCTATGATATGAACCAGT-TTCTGCGTTAGTTCAAAGCATGAA-ACATGTTCA-ATAAATTGATTTGCCAGACTTTTTAGCAATGGCATTG--TA-----A-GTTATAAAA-CCAATCAAGTTCACTCGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG-AT-AAGCCTA-ATAGCTCAAATAAAGAGA-TTGTGCCGGACCagaatgatcaagtgaataatggattgtcaatcatgatacccattgtttggaagtcatcattactttaacatgcttcaacgcaccaaggatagtggacagttgtgggaaaaaaggaattctttttggcatcaacatttttcaaaaggacgtaatttgtcatgactctatgatatgaaccagtttctgcgttagttcaaagcatgaaacatgttcaataaattgatttgccagactttttagcaatggcattgtaagttataaaaccaatcaagttcactcgtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgataagcctaatagctcaaataaagagattgtgccggacc
gi|3 : caggtccggcacaatctttatttagcttatagctttatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctttcatcaattaaatttctacaagcagaaacagtcgaatttactgagtgaacacatttataacttgtgcataccatagacaatgtgtaaacaagaaaaactttctttaactaggtcctttgaaagaaattggatttttaatatttgcagacacctaagatcaaccgagttgtcaaaccaacagttatctaaattacagtatacagaaaaaagtcaaagaatgatcaagtgaataatggattgtcaatcatgatacccattgtttggaagtcatcattactttaacatgcttcaacgcaccaaggatagtggacagttgtgggaaaaaaggaattctttttggcatcaacatGGTCCAGTAAACAATCTCTTTAT-TAGCTATA-AGCTTTATCC--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NAACCTTTCACTCAAATTAACTTTCTACACCCAGAAA-AGTCGCATTTCACTGA-----GTGAA-TACCATTT--------CAT-ATTTATGT----CTTAGAACAGCTATGGAAACAAGAAAAACTTT-TTGAAA--------------C---TAGGTC--TTAAGAAGAAAATTGGA-TTTTAA-ATTTGCAAAC-CCTAAGATC-ACTGAGTTGTC-ACCGAACAGTTATCTAAAATACAGGCTACA-ATAAAAGTCAAT
gi|3 : AATTTTCAAAAAGGACGTAGTTTTTTCATG-A-TCTA--ATAAGG-C-AGTGTTC-G-GTTAGTTCAAAGTATAAA-ACATGTCCCAA-AAATTAT-TTGTTCGAC-TTATA--AATGTCATTG--T------ACTTTATGAAACTCTATGTAATTCAC-C-TAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG-G-AT-AAG--TATATAGCTT-AGAAAAGAGATTTGTACTGGAgatggatcaaatgaaaatagatggattgtcaatcatgaatcccttgtgaatcatcttacttttaacacgctgtccaacgcacacgggtagaggatacagttatgagaacaaaaggaattctttgttgctggaattttcaaaaaggacgtagttttttcatgatctaataaggcagtgttcggttagttcaaagtataaaacatgtcccaaaaattatttgttcgacttataaatgtcattgtactttatgaaactctatgtaattcacctaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggataagtatatagcttagaaaagagatttgtactgga
gi|4 : ggtccagtaaacaatctctttattagctataagctttatccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacctttcactcaaattaactttctacacccagaaaagtcgcatttcactgagtgaataccatttcatatttatgtcttagaacagctatggaaacaagaaaaactttttgaaactaggtcttaagaagaaaattggattttaaatttgcaaaccctaagatcactgagttgtcaccgaacagttatctaaaatacaggctacaataaaagtcaatgatggatcaaatgaaaatagatggattgtcaatcatgaatcccttgtgaatcatcttacttttaacacgctgtccaacgcacacgggtagaggatacagttatgagaacaaaaggaattctttgttgctggAAGTCCAGCA--CAATCTCTTT---TAGT-------CTTTATC-----------TAGCTATATATAGCTTTATCAAACTTGATTTAGCTATTTC-AAACCTCTCA-TCAAAATAA-TTTCTAAAAGCAGAAA-AGTCGAATTTCACTCATCGTCGCAAACCACGGTTTTTAGTCCACAT-ACGTNNNN-N-NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNN-NN-NAAGCACCCGTGGGTCAC---TAGGTCCTT---AAAG-AAATTGGA-TGTTAA-ATTTGCAGATGTCTAGGATC-ATTGAGTTGTC-AACCAACAGTTATCTAAAATACAGGATACA---AAAAATCAA
gi|4 : cAAA-GGACATCATTTTGTCATGCACTCTA--ATTAGAAC-GGTGATCTG-GTTAGTTCAAAGCATAAA--CATGTTCC-A-AAATTA--TTGTCAGACTTTTTAGCAATGCCATTGACTTGTATAA-TTTATGAAACCTGATCTAATTCACagatgatcaagtgaataatggattatcaattttgaatccccattgtgaaatcatcatactttaacatgnaatttagaagggtcaagaaaattagatgtgtgaaataaggcaatanaaaggacatcattttgtcatgcactctaattagaacggtgatctggttagttcaaagcataaacatgttccaaaattattgtcagactttttagcaatgccattgacttgtataatttatgaaacctgatctaattcac
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CTTTTAGTATAGATCTATTAATGTAAGTCTTTAAGTTAATCAATCATTAGTTTGAAAGCTAGTTTGAAAGCTTAATTAAATCTGTATTCAAAAGTTAACAAGTCGTCAAATGTCTAGACAGTTGAAGGCATCG
Unaligned ( gi|6 ): TCGCAAACCACGGTTTGAGTCCACATACGTTGTCTCAAACGTGATGATGGAGAGAATCGATAAGAAGCACCCGTGGGTCACCGACAGA
Unaligned ( gi|7 ): CCACGGTTTGAGTCCACATACGTTCTCTCAAACGTTTGATGATGGAGAAATCGATAAGAAGCACCCGTGGGTCACCGACA
Unaligned ( gi|8 ): GCAAACCAGGGTTTTGAGTCCACATACGTTTCGATGATGAAGAGAATCGATAAGAAGCACCCGTGGGTCACCGACAAT
Unaligned ( gi|9 ): ATACGTTGCTGGATGATGGAGAGAATCGATAAGAAGCACCCGTGGGTCACCGACGATA
Unaligned ( gi|10 ): TTGAGTCCACATACGTGATGGAGAGAATCGTTAAAAAGCACCCGCCGGTCACCGACGA
Unaligned ( gi|12 ): GATGATGGGGAATATCGATAAGAAGCACCCGTGGGCCACCGACGAT
Unaligned ( gi|13 ): GATGCGGGAGGATCGATATGACGCACCCGTGGGTCACCGCACGA
Unaligned ( gi|14 ): GAAGCAAATAAAATGTGAATGATCAAAACGCATCGGTCGC
Unaligned ( gi|16 ): AATCGATAAGAAGCACCCGCCGGTCACCGAAGAT
Unaligned ( gi|17 ): GATAAGAAGCACCCGTGGGTCACCAACGATGCA
Unaligned ( gi|18 ): AGAGCAAATTAAAATTGAATGTCAAAACGCATG
Unaligned ( gi|19 ): GTCGTCGCAAACCACGGTTTTGAGTCCACATA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 55555555555 22222 1 2 333333333 1 222 11 1 1 666666666666666666 111 1 1 1 1 1 1 111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 2 11 1 1 11 111 22 444444444444 1 555555555555555555555555555555555555555555555555555555 1 22 1 1
lowQualScore : 11 0 8 66666 88888888888 8 8 8 0 8 2 55555 2 0 0 888888888 0 555 5 11 0 0 666666666666666666 2 333 0 0 0 0 0 4 0 1 666 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 3 0 2 33 3 0 2 3 0 33 111 33 1 3 2 0 555555555555 2 1 1 7 3 777777777777777777777777777777777777777777777777777777 3 00 7 3 3 3
lowQualScore : .. . . ..... ........... . . . . . . ..... . . . ......... . ... . .. . . .................. . ... . . . . . . . . ... .................................................................................................................................... . . . . .. . . . . . .. ... .. . . . . ............ . . . . . ...................................................... . .. . . . .
lowQualScore : 00 8 2 66666 55555555555 0 0 0 6 0 5 00000 0 0 0 888888888 0 888 8 00 0 0 222222222222222222 5 222 0 0 0 5 0 2 0 0 888 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 2 0 5 88 2 0 5 2 0 22 000 88 0 2 5 8 222222222222 5 0 0 3 3 777777777777777777777777777777777777777777777777777777 3 00 3 3 3 7
consensus : AGGTCCAGTA--CAATCTCTTTATCTAGCTATATAGCTTTATCC--NNNNNNNNTAGCTATATATAGCTTTATCAAGCTTGATTTAGCTATTTC-AAACCTTTCA-TCAAATTAA-TTTCTACAAGCAGAAA-AGTCGAATTTCACTGA-----GCGAA-CAC-ATTT--------CAT-ACTTATGC-T-CCTTAGAACAN-TATGGAAACAAGAAAAACTTT-TT-AAA--------------C---TAGGTCCTTTAAAAAG-AAATTGGA-TTTTAA-ATTTGCAGACGCCTAGGATC-ACCGAGTTGTC-AACCAACAGTTATCTAAAATACAGGNTACA-ATAAAAGTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAAATTTTCAAAA-GGACGTAGTTTTTTCATG-ACTCTA--ATAAGAAC-AGTGTTCTG-GTTAGTTCAAAGCATAAA-ACATGTTCC-A-AAATTA--TTGTCNGACTTTTTAGCAATGTCATTG--T------A-TTTATGAAACCCNATNTAATTCACTC-TAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTG-AT-AAG-CTATATAGCTT-AATAAAGAGA-TTGTACCGGACC
Reference ( family-567 ) : AGGTCCAGTA--CAATCTCTTTATCTAGCTATATAGCTTTATCC--NNNNNNNNTAGCTATATATAGCTTTATCAAGCTTGATTTAGCTATTTC-AAACCTTTCA-TCAAATTAA-TTTCTACAAGCAGAAA-AGTCGAATTTCACTGA-----GCGAA-CAC-ATTT--------CAT-ACTTATGC-T-CCTTAGAACAN-TATGGAAACAAGAAAAACTTT-TT-AAA--------------C---TAGGTCCTTTAAAAAG-AAATTGGA-TTTTAA-ATTTGCAGACGCCTAGGATC-ACCGAGTTGTC-AACCAACAGTTATCTAAAATACAGGNTACA-ATAAAAGTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAAATTTTCAAAA-GGACGTAGTTTTTTCATG-ACTCTA--ATAAGAAC-AGTGTTCTG-GTTAGTTCAAAGCATAAA-ACATGTTCC-A-AAATTA--TTGTCNGACTTTTTAGCAATGTCATTG--T------A-TTTATGAAACCCNATNTAATTCACTC-TAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTG-AT-AAG-CTATATAGCTT-AATAAAGAGA-TTGTACCGGACC
gi|1 : AGGTCCAGTA--CAATCTCTTTATCTAGCTATATAGCTTTATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-AAACCTTTCA-TCAAATTAA-TTTCTACACCCAGAAA-AGTCGAATTTCAATGA-----GTGAA-TAC-ATTT--------CAT-ACTTATGC-T-CCTTAGAACAC-TATGGAAGCAAGAAAAACTTT-TT-AAA--------------CTGGTAGGTCCTTTAAAAAG-AAATTGGA-TTTTAA-ATTTGCAGATATCTAGGATC-ATGGAGTTGTC-AACCAACAGTTATCTAAAATACAGGCTACA-ATAAAAGTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAAATTTTCAAAA-GGACATAGTTTTTTTATGAACTCTA--ATAAGAAC-AGTGTTCTG-GTTAGTTCAAAGTATAAACATATGTTCC-A-AAATTA--TTGTTTAACTTTTCAGCAATGTCATTG--T------A-CTTATGAAACTCTATGTAATTCACTC-TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATATATAAAG-CTATATAGCTT-GATAAAGAGA-TTGTACGGGCCC
gi|11 : AGCTTGATTTAGCTATTTTTAAACCTTTCA-TCAAATTAA-TTTCTACAAGCATAAG-A
gi|15 : GGTCCAGTG--CAATCTCTTTATCTAGCTACATAGCTTTAT
gi|2 : AGGTCCGGCA--CAATCT--TTATTTAGCT-TATAGCTTTATCA--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNACCTTTCA-TCAATTAAA-TTTCTACAAGCAGAAACAGTCGAATTT-ACTGA-----GTGAA-CAC-ATTT---------ATAACTTGTGCATACCATAG-ACAA-TGTGTAAACAAGAAAAACTTTCTT-TAA--------------C---TAGGTCCTTT-GAAAG-AAATTGGATTTTTAATATTTGCAGACACCTAAGATCAACCGAGTTGTCAAACCAACAGTTATCTAAATTACAGTATACAGAAAAAAGTCAA
gi|2 : cTTTTCAAAA-GGACGTAATTTGT-CATG-ACTCTATGATATGAACCAGT-TTCTGCGTTAGTTCAAAGCATGAA-ACATGTTCA-ATAAATTGATTTGCCAGACTTTTTAGCAATGGCATTG--TA-----A-GTTATAAAA-CCAATCAAGTTCACTCGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG-AT-AAGCCTA-ATAGCTCAAATAAAGAGA-TTGTGCCGGACCagaatgatcaagtgaataatggattgtcaatcatgatacccattgtttggaagtcatcattactttaacatgcttcaacgcaccaaggatagtggacagttgtgggaaaaaaggaattctttttggcatcaacatttttcaaaaggacgtaatttgtcatgactctatgatatgaaccagtttctgcgttagttcaaagcatgaaacatgttcaataaattgatttgccagactttttagcaatggcattgtaagttataaaaccaatcaagttcactcgtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgataagcctaatagctcaaataaagagattgtgccggacc
gi|3 : caggtccggcacaatctttatttagcttatagctttatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctttcatcaattaaatttctacaagcagaaacagtcgaatttactgagtgaacacatttataacttgtgcataccatagacaatgtgtaaacaagaaaaactttctttaactaggtcctttgaaagaaattggatttttaatatttgcagacacctaagatcaaccgagttgtcaaaccaacagttatctaaattacagtatacagaaaaaagtcaaagaatgatcaagtgaataatggattgtcaatcatgatacccattgtttggaagtcatcattactttaacatgcttcaacgcaccaaggatagtggacagttgtgggaaaaaaggaattctttttggcatcaacatGGTCCAGTAAACAATCTCTTTAT-TAGCTATA-AGCTTTATCC--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NAACCTTTCACTCAAATTAACTTTCTACACCCAGAAA-AGTCGCATTTCACTGA-----GTGAA-TACCATTT--------CAT-ATTTATGT----CTTAGAACAGCTATGGAAACAAGAAAAACTTT-TTGAAA--------------C---TAGGTC--TTAAGAAGAAAATTGGA-TTTTAA-ATTTGCAAAC-CCTAAGATC-ACTGAGTTGTC-ACCGAACAGTTATCTAAAATACAGGCTACA-ATAAAAGTCAAT
gi|3 : AATTTTCAAAAAGGACGTAGTTTTTTCATG-A-TCTA--ATAAGG-C-AGTGTTC-G-GTTAGTTCAAAGTATAAA-ACATGTCCCAA-AAATTAT-TTGTTCGAC-TTATA--AATGTCATTG--T------ACTTTATGAAACTCTATGTAATTCAC-C-TAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG-G-AT-AAG--TATATAGCTT-AGAAAAGAGATTTGTACTGGAgatggatcaaatgaaaatagatggattgtcaatcatgaatcccttgtgaatcatcttacttttaacacgctgtccaacgcacacgggtagaggatacagttatgagaacaaaaggaattctttgttgctggaattttcaaaaaggacgtagttttttcatgatctaataaggcagtgttcggttagttcaaagtataaaacatgtcccaaaaattatttgttcgacttataaatgtcattgtactttatgaaactctatgtaattcacctaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggataagtatatagcttagaaaagagatttgtactgga
gi|4 : ggtccagtaaacaatctctttattagctataagctttatccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacctttcactcaaattaactttctacacccagaaaagtcgcatttcactgagtgaataccatttcatatttatgtcttagaacagctatggaaacaagaaaaactttttgaaactaggtcttaagaagaaaattggattttaaatttgcaaaccctaagatcactgagttgtcaccgaacagttatctaaaatacaggctacaataaaagtcaatgatggatcaaatgaaaatagatggattgtcaatcatgaatcccttgtgaatcatcttacttttaacacgctgtccaacgcacacgggtagaggatacagttatgagaacaaaaggaattctttgttgctggAAGTCCAGCA--CAATCTCTTT---TAGT-------CTTTATC-----------TAGCTATATATAGCTTTATCAAACTTGATTTAGCTATTTC-AAACCTCTCA-TCAAAATAA-TTTCTAAAAGCAGAAA-AGTCGAATTTCACTCATCGTCGCAAACCACGGTTTTTAGTCCACAT-ACGTNNNN-N-NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNN-NN-NAAGCACCCGTGGGTCAC---TAGGTCCTT---AAAG-AAATTGGA-TGTTAA-ATTTGCAGATGTCTAGGATC-ATTGAGTTGTC-AACCAACAGTTATCTAAAATACAGGATACA---AAAAATCAA
gi|4 : cAAA-GGACATCATTTTGTCATGCACTCTA--ATTAGAAC-GGTGATCTG-GTTAGTTCAAAGCATAAA--CATGTTCC-A-AAATTA--TTGTCAGACTTTTTAGCAATGCCATTGACTTGTATAA-TTTATGAAACCTGATCTAATTCACagatgatcaagtgaataatggattatcaattttgaatccccattgtgaaatcatcatactttaacatgnaatttagaagggtcaagaaaattagatgtgtgaaataaggcaatanaaaggacatcattttgtcatgcactctaattagaacggtgatctggttagttcaaagcataaacatgttccaaaattattgtcagactttttagcaatgccattgacttgtataatttatgaaacctgatctaattcac
blockSeqs : AA C TACAT ANNNNNNNN T C C C C TCGTC T C C TTAGTCCAC A ATA A GC C G GCACCCGTGGGTCAC C TAA A T T A A C A A GAA A T C C TG A C G T C A AT AT A T G ACTTGTATAAT C A C T G NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG . CC T A T C
blockSeqs : . T TTAT CNNNNNNNN . . . . C . T . G C . N N A . . C C TG . . . G . T . C AT . T . C . A . G T . A AA T C T G TAAG C T G . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGG . . . . . T
blockSeqs : . . TATA . . . . . . . C . . . . . . N . . C . . . . . . . T . A . . . . . . . . . . . . A . A . . TACT . G C
blockSeqs : . . . . . . .
blockSeqCons : TTA**
originalCons : AGGTCCAGTA--CAATCTCTTTATCTAGCTATATAGCTTTATCC--NNNNNNNNTAGCTATATATAGCTTTATCAAGCTTGATTTAGCTATTTC-AAACCTTTCA-TCAAATTAA-TTTCTACAAGCAGAAA-AGTCGAATTTCACTGA-----GCGAA-CAC-ATTT--------CAT-ACTTATGC-T-CCTTAGAACAN-TATGGAAACAAGAAAAACTTT-TT-AAA--------------C---TAGGTCCTTTAAAAAG-AAATTGGA-TTTTAA-ATTTGCAGACGCCTAGGATC-ACCGAGTTGTC-AACCAACAGTTATCTAAAATACAGGNTACA-ATAAAAGTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAAATTTTCAAAA-GGACGTAGTTTTTTCATG-ACTCTA--ATAAGAAC-AGTGTTCTG-GTTAGTTCAAAGCATAAA-ACATGTTCC-A-AAATTA--TTGTCNGACTTTTTAGCAATGTCATTG--T------A-TTTATGAAACCCNATNTAATTCACTC-TAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTG-AT-AAG-CTATATAGCTT-AATAAAGAGA-TTGTACCGGACC
finalCons : AGGTCCAGTA--CAATCTCTTTATCTAGCTTA--AGCTTTATCC--NNNNNNNNTAGCTATATATAGCTTTATCAAGCTTGATTTAGCTATTTC-AAACCTTTCA-TCAAATTAA-TTTCTACAAGCAGAAA-AGTCGAATTTCACTGA-----GCGAA-CAC-ATTT--------CAT-ACTTATGC-T-CCTTAGAACAN-TATGGAAACAAGAAAAACTTT-TT-AAA--------------C---TAGGTCCTTTAAAAAG-AAATTGGA-TTTTAA-ATTTGCAGACGCCTAGGATC-ACCGAGTTGTC-AACCAACAGTTATCTAAAATACAGGNTACA-ATAAAAGTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAAATTTTCAAAA-GGACGTAGTTTTTTCATG-ACTCTA--ATAAGAAC-AGTGTTCTG-GTTAGTTCAAAGCATAAA-ACATGTTCC-A-AAATTA--TTGTCNGACTTTTTAGCAATGTCATTG--T------A-TTTATGAAACCCNATNTAATTCACTC-TAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTG-AT-AAG-CTATATAGCTT-AATAAAGAGA-TTGTACCGGACC
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CTTTTAGTATAGATCTATTAATGTAAGTCTTTAAGTTAATCAATCATTAGTTTGAAAGCTAGTTTGAAAGCTTAATTAAATCTGTATTCAAAAGTTAACAAGTCGTCAAATGTCTAGACAGTTGAAGGCATCG
Unaligned ( gi|6 ): TCGCAAACCACGGTTTGAGTCCACATACGTTGTCTCAAACGTGATGATGGAGAGAATCGATAAGAAGCACCCGTGGGTCACCGACAGA
Unaligned ( gi|7 ): CCACGGTTTGAGTCCACATACGTTCTCTCAAACGTTTGATGATGGAGAAATCGATAAGAAGCACCCGTGGGTCACCGACA
Unaligned ( gi|8 ): GCAAACCAGGGTTTTGAGTCCACATACGTTTCGATGATGAAGAGAATCGATAAGAAGCACCCGTGGGTCACCGACAAT
Unaligned ( gi|9 ): ATACGTTGCTGGATGATGGAGAGAATCGATAAGAAGCACCCGTGGGTCACCGACGATA
Unaligned ( gi|10 ): TTGAGTCCACATACGTGATGGAGAGAATCGTTAAAAAGCACCCGCCGGTCACCGACGA
Unaligned ( gi|12 ): GATGATGGGGAATATCGATAAGAAGCACCCGTGGGCCACCGACGAT
Unaligned ( gi|13 ): GATGCGGGAGGATCGATATGACGCACCCGTGGGTCACCGCACGA
Unaligned ( gi|14 ): GAAGCAAATAAAATGTGAATGATCAAAACGCATCGGTCGC
Unaligned ( gi|16 ): AATCGATAAGAAGCACCCGCCGGTCACCGAAGAT
Unaligned ( gi|17 ): GATAAGAAGCACCCGTGGGTCACCAACGATGCA
Unaligned ( gi|18 ): AGAGCAAATTAAAATTGAATGTCAAAACGCATG
Unaligned ( gi|19 ): GTCGTCGCAAACCACGGTTTTGAGTCCACATA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 44444 55555555555 22222 1 2 333333333 1 222 11 1 1 666666666666666666 111 1 1 1 1 1 1 111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 2 11 1 1 11 111 22 444444444444 1 555555555555555555555555555555555555555555555555555555 1 22 1 1
lowQualScore : 11 0 8 33333 88888888888 8 8 8 0 8 2 55555 2 0 0 888888888 0 555 5 11 0 0 666666666666666666 2 333 0 0 0 0 0 4 0 1 666 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 3 0 2 33 3 0 2 3 0 33 111 33 1 3 2 0 555555555555 2 1 1 7 3 777777777777777777777777777777777777777777777777777777 3 00 7 3 3 3
lowQualScore : .. . . ..... ........... . . . . . . ..... . . . ......... . ... . .. . . .................. . ... . . . . . . . . ... .................................................................................................................................... . . . . .. . . . . . .. ... .. . . . . ............ . . . . . ...................................................... . .. . . . .
lowQualScore : 00 8 2 44444 55555555555 0 0 0 6 0 5 00000 0 0 0 888888888 0 888 8 00 0 0 222222222222222222 5 222 0 0 0 5 0 2 0 0 888 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 2 0 5 88 2 0 5 2 0 22 000 88 0 2 5 8 222222222222 5 0 0 3 3 777777777777777777777777777777777777777777777777777777 3 00 3 3 3 7
consensus : AGGTCCAGTA--CAATCTCTTTATCTAGCTATATAGCTTTATCC--NNNNNNNNTAGCTATATATAGCTTTATCAAGCTTGATTTAGCTATTTC-AAACCTTTCA-TCAAATTAA-TTTCTACAAGCAGAAA-AGTCGAATTTCACTGA-----GCGAA-CAC-ATTT--------CAT-ACTTATGC-T-CCTTAGAACAN-TATGGAAACAAGAAAAACTTT-TT-AAA--------------C---TAGGTCCTTTAAAAAG-AAATTGGA-TTTTAA-ATTTGCAGACGCCTAGGATC-ACCGAGTTGTC-AACCAACAGTTATCTAAAATACAGGNTACA-ATAAAAGTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAAATTTTCAAAA-GGACGTAGTTTTTTCATG-ACTCTA--ATAAGAAC-AGTGTTCTG-GTTAGTTCAAAGCATAAA-ACATGTTCC-A-AAATTA--TTGTCNGACTTTTTAGCAATGTCATTG--T------A-TTTATGAAACCCNATNTAATTCACTC-TAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTG-AT-AAG-CTATATAGCTT-AATAAAGAGA-TTGTACCGGACC
Reference ( family-567 ) : AGGTCCAGTA--CAATCTCTTTATCTAGCT-TA-AGCTTTATCC--NNNNNNNNTAGCTATATATAGCTTTATCAAGCTTGATTTAGCTATTTC-AAACCTTTCA-TCAAATTAA-TTTCTACAAGCAGAAA-AGTCGAATTTCACTGA-----GCGAA-CAC-ATTT--------CAT-ACTTATGC-T-CCTTAGAACAN-TATGGAAACAAGAAAAACTTT-TT-AAA--------------C---TAGGTCCTTTAAAAAG-AAATTGGA-TTTTAA-ATTTGCAGACGCCTAGGATC-ACCGAGTTGTC-AACCAACAGTTATCTAAAATACAGGNTACA-ATAAAAGTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAAATTTTCAAAA-GGACGTAGTTTTTTCATG-ACTCTA--ATAAGAAC-AGTGTTCTG-GTTAGTTCAAAGCATAAA-ACATGTTCC-A-AAATTA--TTGTCNGACTTTTTAGCAATGTCATTG--T------A-TTTATGAAACCCNATNTAATTCACTC-TAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTG-AT-AAG-CTATATAGCTT-AATAAAGAGA-TTGTACCGGACC
gi|1 : AGGTCCAGTA--CAATCTCTTTATCTAGCTATATAGCTTTATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-AAACCTTTCA-TCAAATTAA-TTTCTACACCCAGAAA-AGTCGAATTTCAATGA-----GTGAA-TAC-ATTT--------CAT-ACTTATGC-T-CCTTAGAACAC-TATGGAAGCAAGAAAAACTTT-TT-AAA--------------CTGGTAGGTCCTTTAAAAAG-AAATTGGA-TTTTAA-ATTTGCAGATATCTAGGATC-ATGGAGTTGTC-AACCAACAGTTATCTAAAATACAGGCTACA-ATAAAAGTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAAAATTTTCAAAA-GGACATAGTTTTTTTATGAACTCTA--ATAAGAAC-AGTGTTCTG-GTTAGTTCAAAGTATAAACATATGTTCC-A-AAATTA--TTGTTTAACTTTTCAGCAATGTCATTG--T------A-CTTATGAAACTCTATGTAATTCACTC-TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATATATAAAG-CTATATAGCTT-GATAAAGAGA-TTGTACGGGCCC
gi|11 : AGCTTGATTTAGCTATTTTTAAACCTTTCA-TCAAATTAA-TTTCTACAAGCATAAG-A
gi|15 : GGTCCAGTG--CAATCTCTTTATCTAGCTACATAGCTTTAT
gi|2 : AGGTCCGGCA--CAATCT--TTATTTAGCT-TATAGCTTTATCA--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNACCTTTCA-TCAATTAAA-TTTCTACAAGCAGAAACAGTCGAATTT-ACTGA-----GTGAA-CAC-ATTT---------ATAACTTGTGCATACCATAG-ACAA-TGTGTAAACAAGAAAAACTTTCTT-TAA--------------C---TAGGTCCTTT-GAAAG-AAATTGGATTTTTAATATTTGCAGACACCTAAGATCAACCGAGTTGTCAAACCAACAGTTATCTAAATTACAGTATACAGAAAAAAGTCAA
gi|2 : cTTTTCAAAA-GGACGTAATTTGT-CATG-ACTCTATGATATGAACCAGT-TTCTGCGTTAGTTCAAAGCATGAA-ACATGTTCA-ATAAATTGATTTGCCAGACTTTTTAGCAATGGCATTG--TA-----A-GTTATAAAA-CCAATCAAGTTCACTCGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG-AT-AAGCCTA-ATAGCTCAAATAAAGAGA-TTGTGCCGGACCagaatgatcaagtgaataatggattgtcaatcatgatacccattgtttggaagtcatcattactttaacatgcttcaacgcaccaaggatagtggacagttgtgggaaaaaaggaattctttttggcatcaacatttttcaaaaggacgtaatttgtcatgactctatgatatgaaccagtttctgcgttagttcaaagcatgaaacatgttcaataaattgatttgccagactttttagcaatggcattgtaagttataaaaccaatcaagttcactcgtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgataagcctaatagctcaaataaagagattgtgccggacc
gi|3 : caggtccggcacaatctttatttagcttatagctttatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctttcatcaattaaatttctacaagcagaaacagtcgaatttactgagtgaacacatttataacttgtgcataccatagacaatgtgtaaacaagaaaaactttctttaactaggtcctttgaaagaaattggatttttaatatttgcagacacctaagatcaaccgagttgtcaaaccaacagttatctaaattacagtatacagaaaaaagtcaaagaatgatcaagtgaataatggattgtcaatcatgatacccattgtttggaagtcatcattactttaacatgcttcaacgcaccaaggatagtggacagttgtgggaaaaaaggaattctttttggcatcaacatGGTCCAGTAAACAATCTCTTTAT-TAGCTATA-AGCTTTATCC--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NAACCTTTCACTCAAATTAACTTTCTACACCCAGAAA-AGTCGCATTTCACTGA-----GTGAA-TACCATTT--------CAT-ATTTATGT----CTTAGAACAGCTATGGAAACAAGAAAAACTTT-TTGAAA--------------C---TAGGTC--TTAAGAAGAAAATTGGA-TTTTAA-ATTTGCAAAC-CCTAAGATC-ACTGAGTTGTC-ACCGAACAGTTATCTAAAATACAGGCTACA-ATAAAAGTCAAT
gi|3 : AATTTTCAAAAAGGACGTAGTTTTTTCATG-A-TCTA--ATAAGG-C-AGTGTTC-G-GTTAGTTCAAAGTATAAA-ACATGTCCCAA-AAATTAT-TTGTTCGAC-TTATA--AATGTCATTG--T------ACTTTATGAAACTCTATGTAATTCAC-C-TAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG-G-AT-AAG--TATATAGCTT-AGAAAAGAGATTTGTACTGGAgatggatcaaatgaaaatagatggattgtcaatcatgaatcccttgtgaatcatcttacttttaacacgctgtccaacgcacacgggtagaggatacagttatgagaacaaaaggaattctttgttgctggaattttcaaaaaggacgtagttttttcatgatctaataaggcagtgttcggttagttcaaagtataaaacatgtcccaaaaattatttgttcgacttataaatgtcattgtactttatgaaactctatgtaattcacctaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggataagtatatagcttagaaaagagatttgtactgga
gi|4 : ggtccagtaaacaatctctttattagctataagctttatccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacctttcactcaaattaactttctacacccagaaaagtcgcatttcactgagtgaataccatttcatatttatgtcttagaacagctatggaaacaagaaaaactttttgaaactaggtcttaagaagaaaattggattttaaatttgcaaaccctaagatcactgagttgtcaccgaacagttatctaaaatacaggctacaataaaagtcaatgatggatcaaatgaaaatagatggattgtcaatcatgaatcccttgtgaatcatcttacttttaacacgctgtccaacgcacacgggtagaggatacagttatgagaacaaaaggaattctttgttgctggAAGTCCAGCA--CAATCTCTTT---TAGT-------CTTTATC-----------TAGCTATATATAGCTTTATCAAACTTGATTTAGCTATTTC-AAACCTCTCA-TCAAAATAA-TTTCTAAAAGCAGAAA-AGTCGAATTTCACTCATCGTCGCAAACCACGGTTTTTAGTCCACAT-ACGTNNNN-N-NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNN-NN-NAAGCACCCGTGGGTCAC---TAGGTCCTT---AAAG-AAATTGGA-TGTTAA-ATTTGCAGATGTCTAGGATC-ATTGAGTTGTC-AACCAACAGTTATCTAAAATACAGGATACA---AAAAATCAA
gi|4 : cAAA-GGACATCATTTTGTCATGCACTCTA--ATTAGAAC-GGTGATCTG-GTTAGTTCAAAGCATAAA--CATGTTCC-A-AAATTA--TTGTCAGACTTTTTAGCAATGCCATTGACTTGTATAA-TTTATGAAACCTGATCTAATTCACagatgatcaagtgaataatggattatcaattttgaatccccattgtgaaatcatcatactttaacatgnaatttagaagggtcaagaaaattagatgtgtgaaataaggcaatanaaaggacatcattttgtcatgcactctaattagaacggtgatctggttagttcaaagcataaacatgttccaaaattattgtcagactttttagcaatgccattgacttgtataatttatgaaacctgatctaattcac
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CTTTTAGTATAGATCTATTAATGTAAGTCTTTAAGTTAATCAATCATTAGTTTGAAAGCTAGTTTGAAAGCTTAATTAAATCTGTATTCAAAAGTTAACAAGTCGTCAAATGTCTAGACAGTTGAAGGCATCG
Unaligned ( gi|6 ): TCGCAAACCACGGTTTGAGTCCACATACGTTGTCTCAAACGTGATGATGGAGAGAATCGATAAGAAGCACCCGTGGGTCACCGACAGA
Unaligned ( gi|7 ): CCACGGTTTGAGTCCACATACGTTCTCTCAAACGTTTGATGATGGAGAAATCGATAAGAAGCACCCGTGGGTCACCGACA
Unaligned ( gi|8 ): GCAAACCAGGGTTTTGAGTCCACATACGTTTCGATGATGAAGAGAATCGATAAGAAGCACCCGTGGGTCACCGACAAT
Unaligned ( gi|9 ): ATACGTTGCTGGATGATGGAGAGAATCGATAAGAAGCACCCGTGGGTCACCGACGATA
Unaligned ( gi|10 ): TTGAGTCCACATACGTGATGGAGAGAATCGTTAAAAAGCACCCGCCGGTCACCGACGA
Unaligned ( gi|12 ): GATGATGGGGAATATCGATAAGAAGCACCCGTGGGCCACCGACGAT
Unaligned ( gi|13 ): GATGCGGGAGGATCGATATGACGCACCCGTGGGTCACCGCACGA
Unaligned ( gi|14 ): GAAGCAAATAAAATGTGAATGATCAAAACGCATCGGTCGC
Unaligned ( gi|16 ): AATCGATAAGAAGCACCCGCCGGTCACCGAAGAT
Unaligned ( gi|17 ): GATAAGAAGCACCCGTGGGTCACCAACGATGCA
Unaligned ( gi|18 ): AGAGCAAATTAAAATTGAATGTCAAAACGCATG
Unaligned ( gi|19 ): GTCGTCGCAAACCACGGTTTTGAGTCCACATA