lowQualScore                  :        33333               5555555555555555555555555555555                111             111           333333      1111               2222222222        11    1             11   1111111111               1111             111111                   111                  33333333     11111111                   111111                     1111      3333333333333333               11111111    11111              111111                         111                                         1   1                                                                                              333333                                     111111111                        222222          111                                        3333333333         222222222                                                 1111     1  111      1    11                  11111       1                                                            2222                      2222222222222            11      33333   1           22222222222222  1           4  1   
lowQualScore                  :        99999      5    5   7777777777777777777777777777777  55   88       000    3 88888  333 44    44  888888      0000   5555 3  3   2222222222 3 555  00    3  3   3 3    44   2222222222 0 55          1111 44 3  7777  555555 3 555  3   3      999  55    88  3     66666666  55 66666666 2  3  444     7   000000    3   55    3  3 3 4444  55  2222222222222222 3   0    777  77777777    44444    88  5     222222  3     3 3   55   3     333   4  77   3 3 33   6  3 3 88    3  88   0   1 3 55     55 55  7777 3   0 3 44 7 44 0  88888 3 88888 6     888888  3  55  44     3  888   3 444444 44  44 44  88888  3 3     44     6  666666666  3    3  3   555 3 88  333333  4 4     111 4    55   55  777  4   4    55  8888 4 1111111111         111111111           5  5  99 66   0      5           6    0000 5   8  888  66  8    33   66  5     5  5 11111 5     1  99           1 1    5   1      3   5   66  4          1 3 0000             999      7777777777777    0 8     11 8    55555 0 0   2 0     11111111111111  0           0  7   
lowQualScore                  :        .....      .    .   ...............................  ..   ..       ...    . .....  ... ..    ..  ......      ....   .... .  .   .......... . ...  ..    .  .   . .    ..   .......... . ..          .... .. .  ....  ...... . ...  .   .      ...  ..    ..  .     ........  .. ........ .  .  ...     .   ......    .   ..    .  . . ....  ..  ................ .   .    ...  ........    .....    ..  .     ......  .     . .   ..   .     ...   .  ..   . . ..   .  . . ..    .  ..   .   . . ..     .. ..  .... .   . . .. . .. .  ..... . ..... .     ......  .  ..  ..     .  ...   . ...... ..  .. ..  .....  . .     ..     .  .........  .    .  .   ... . ..  ......  . .     ... .    ..   ..  ...  .   .    ..  .... . ..........         .........           .  .  .. ..   .      .           .    .... .   .  ...  ..  .    ..   ..  .     .  . ..... .     .  ..           . .    .   .      .   .   ..  .          . . ....             ...      .............    . .     .. .    ..... . .   . .     ..............  .           .  .   
lowQualScore                  :        88888      7    0   6666666666666666666666666666666  00   66       444    3 33333  999 66    66  555555      4444   9999 3  3   9999999999 3 888  00    3  3   3 3    22   9999999999 4 88          7777 66 3  1111  888888 3 888  3   3      777  77    66  6     44444444  00 88888888 2  6  111     3   555555    6   00    6  6 6 2222  00  6666666666666666 6   5    000  11111111    11111    66  0     999999  6     6 6   00   6     777   2  99   3 3 88   7  6 6 00    6  66   9   1 6 00     00 00  7777 6   5 6 33 7 66 3  33333 3 33333 7     888888  1  22  22     1  555   1 000000 66  66 66  22222  1 1     22     2  000000000  1    1  3   888 3 33  888888  0 0     000 0    55   55  000  0   0    55  5555 0 0000000000         999999999           0  0  00 99   9      0           0    1111 0   1  999  99  1    22   44  0     7  7 11111 7     4  33           9 7    7   7      6   7   44  3          0 5 3333             333      6666666666666    8 0     00 0    00000 8 0   0 8     22222222222222  0           0  0   
consensus                     : AATCATAA----GTGTTT-TGTA-CAT---G--TGTA--C-----N--A---------TT--CAA--AGAAAAA---TATC-C-----GA-G-A--GTGA--ATC---A-ACGTTC----ATA-T--C-GA-TAC---GTA--G-T-A---GGN-TTCCNTA-CAT-T-TTCA-NCAA--GA-CT---GTT-GTTTATTATCA----C--G-TG----AC----T-A-T---CA-CGT-GACGTT-G-TA-ATTTT--AG-AATTAA--C---NAA--A--T-----GATT-GT-ANTAATC-GCA------AAAT-TGC--AACG-AT-A-T--CGAC--TA-AA---T--A-CAGG-C-CGACCCTT---TTG-------ATAT-T---GAGA--AATAAAATT-A---AC-TTTAC-A-TTA--CAT-GAAAAG-TGTTNGG--AAA-A-A-CTTC-TC-C-GT-ATAA-AA--GAA-AATGG-T--TTAAA--A--TG----C-ATACA-ACGCGG--CATA-----C-T-----T-TTTAA------TT-TT-CGA--CAGTA-TG---CAA-GGA-A--T--TA--T--CG--T--AT-A-CGGGA--AAGGG-TT---CCT---TT-TGCG-TC-AGA---A-G-NTT---C--TC-C-ATCAC---T-TTTC--TGC--TT---TA-TCA-ATTT--AA----T-ACGTA-A----ATAAGTATAN------AATCTTCCAACAT-CG-CC-AT--GCATTGCGTA-TCGTTGCAATTTCACA--G-T-TTCTTCA-AGC--TGGTCGT-AAGA-ATTATGTAG-AT-T-G-G-A-TGTTC-CT-AAAACGCAGTGAAGATCGG-AATAAGGAGAAGAT-ATA-GGGGCGATTTCAAAGTCACAATATGATATGAATATC-AACTACA-TAC-AT------TCTATA-CATAA--A-AAAT-----GAA-GAGTGATTTGG---TATAAA-AAGGAA-AGAATGCATATATTATAG
Reference ( gi|4 )            : AATCATAT----GTGTTT-TGTA-CAT---T--TGTA--C-----A--A---------TT--CAA--AGAAAAA---TATC-C-----GA-A-A--GTGA--AT----G-ACGTTC----ATA-T--C-GA-TAC---GTA--T-T-A---GGA-TTCCGTA-CAT-T-TTCA-ACAA--AA-CT---GTT-GTTTATTATCA----C--G-TG----AC----T-A-T---CA-CGT-GATGTT-T-TA-ATTTT--AG-AATTAA--T---TAA--A--T-----GATT-GT-ATTAATT-GCA------AAAT-TGC--AACG-AT-A-T--CAAC--TA-AA---T--A-AAGA-C-CGACCCTT---TTG-------ATAT-T---GAGA--AATAAAATT-A---AC-TTTAC-A-TTA--CAT-GAAAAA-TGTTTGG--AAA-A-A-CTTC-TC-C-GT-ATAA-AA--GAA-AATCG-T--TTAAA--A--TG----C-ATACA-ACGCAG--CATA-----C-T-----T-TTCAA------TT-TT-CGA--CAGTA-TG---CAA-G---A--T--TA--T--TG--T--AT-A-CGGGA--AAGGG-TT---CCT---TT-TGCG-TC-AGA---A-G-CTT---C--CC-C-ATCAC---T-TTTC--TGC--TT---TA-TCA-ATTT--AA----T-A-ACA-G----ATAAGTATAA------AATCTTCCAACAT-CG-CC-GT--GCATTGCGTA-TCGTTGCAATTCCACA--G-T-TTCGTC--GGC--TGTTCGT-GAGA-ATTATGTAG-AT-T-G-G-A-TGTTC-CT-AAAACGCAGTGAAGATCGG-AATAAGGAGAAGAT-ATA-GGGGCGATTTCAAAATTATAAAATGATATGAATATC-AACTACA-CAC-AT------TCTATA-CATAA--A-AAAT-----GAA-GAGCGATTTGG---TATAAA-AAGGAA-AGAATGCATAT-TTTTAG
gi|1                          : AATCATAAAAAAGTGTTTATGTA-CAT---G--TGTA--C-----G--AAGGCCCTGATT--GAATCAGAAAAA----GCC-G-----GAGA-A--TTAA--AT----GGACGCTTTGCAATA-T--C-AAGTAT---GTA--G-T-A---GGG-ATAATTA-GAT-T-TTCA--CAATAAA-CT---GCT--TTTAA-ATCAAT--C--G-TGCTGAAC----T-AGT---CAACGT-GATGTTGT-TA-ATTTTC-AG-AATTAAAAT---AAA--A--T-----A--T-GT--TTGATTTGCA------AAAT-TGC--AACGCAT-AAT--CGAA--TA-AA---T--A-CACA-GGCGATCCTT---TTGTTTTGAGATAT-TTAAGAGA--GAAAAAATT-T---AC-TT-AC-A-TGA--CAT-GAAGAA-GGTGTGGGAAAA-A-A-CTTCATCGC-GTGAGAATAA--GAATAATTG-T--T-AAAGGA--TG----C-ATACAGACGC-G--CCGA-----C-TGAGCTT-TTCAA------TTATT-GGA--CAGTA-TGG--CAA-GGAAA--T--TA--TGGTGACT--AT-A-AGCGG--AAGGG-TTTCTCCT---TT-CGCC-TC--GA---A-G-ATTATTC--TC-C-ATCAC---T-TT-C--TGCGTTT---TA-TCA-ATTT--AATACGT-A-ATA-A----ATTAGT----------AATCTTCCAACAT-CG-CCAAT--GCA-TGCGTA-T-GTTGCAATTTCAAA--G-TCTTCTTC--AGC--TGGTCGTAAAGACATT-TGTAG-ATCT-G-C-AGTGTTCACTCCAAACGTCGTGACGATCGG-AA-ATGGAGAGATT-ATAGGGGGCGATTTCAAAAGTCCAACATGATATGAATACT-GAATGCA--AC-ATTATATCTTTATATCATAATGACAAATGGGGGGAG-GAGTGGATTGGGTTTATAAATGGGGAAGAGAATG
gi|19                         : AATCATAA----ATGTTT-TGTA-CAT---G--CGTA--C-----T--A---------TT--CAA--AGAAAAA---TATC-C-----GA-G-A--GTAA--Agctaatattggacaagaaggtggt
gi|3                          : cATCATA-----GTGTTT--GTA-CAT---G--TCT---C-----T--A---------TT--CAAG-AGAAAAA---TATC-G-----GA-G-A--GTGA--ATC---G-ACGTTCT---ACA-T--CCGA-CAC---GTC--CGT-A---GGAGTTCC-TA-TAT-T-TTCA-ACAA--GA-CT---GTT-TGTTAATATCA----C--GGTG----AC----TTA-T---CA-CGT-TATGTT-G-TA--TTTT--AG-AATTAA--C---AAA--A--T-----TATT-GT-ATTAATTTGCA------CA-T-TG---AACG-ATTA-T--CGAC--TA------T--A-CAGG-C-CGATCCTT---TTA-------ATAT-TAAGGAGA--AA-AAAAT--A---AC-TTTAC-AATTA--CAT-GAAA----GTGTGG--AAA-ATA-CTTCGTC-C-GT-ATAA-G---GAA-AATAG-T--TTAAA--A--TG----CCATAAA-TTTCGG--CATA-----C-T-----T-TTCAA------TT-TTTCGA--GAGTA-TGTCACGA-A---A--T--TA--T--TG--T--AT-A-CGTGA--AAGGG-TT---TCTC--TT-TGTG-T--AGT---ATG-ATT---T--TC-C-ATAAC---T-TTTC--TGC--TT---TAATCA-ATTT--GA------A-ATACG----TTAAGTATTA------A-TCTTCCAA-ATGCG-CC-GTATGCATTGCGTA-TCGTTGCAATTTCACA--ATT-TTCTTCAAGGCTTTGGTCGT--AAA-ATTATATAG-AT-T-GTGCA-TGTT--CT-AAACGGCAGTGAAG-TCGGAAATAAAGAGA--AT-ATA--GGGCGATTCAAAAGCCACAATATGATATGAATATCAAACAACATTAT-AT------TCTATA-CATAA--A-AAAT-----GGATGAGTGCTTTGG---TAT--A-AAGGAA-AGAATGCATATATTATAG
gi|17                         :  ATCATAA----GTGTTT-TGTA-CAT---G--TGTG--CTATATAT-A---------TT--CAA--AGAAAA----T-TC-C-----GA-T-A--GTGA--ATC---G-ACGTTC----ATA-T--C-GA-TTC---GTA--G-TAA---GAA-TTCCTTA-CAC-T-TTCA-TCAA--GA-C-----TT-GTTTATTATCgacaagacgtggtttcatgttatacctaacgtccactttgatatacggttagatagcgataa
gi|5                          :         ----GTGTTT-TGTA-CAT---G--TGTA--C-----T--A---------TT--CAA--AGAAAAA---TATC-C-----GA-G-A--GTGA--------------------------------TAA---GTA--A-T-A---GGA-TTCCTTA-CAT-T-TTCA-ACAA--GA-CT---GTT-GTTTATTATCA----T--G-TG----AC----T-A-T---CA-CGT-GATGTT-G-TA------------ATT----T---TAG--A----------------ATTAA----CA------AAAA-TG----ATT-GT-A-T--TTAT--TG---------------------CCCTT---TTG-------A-AT-T---GAGA--AATAATAT--A---ACATTTAC-A-TTA--CAT-GAAAAG-TGTTGGG--AAA-A-AACTTC-TC-C-GT-ATAA-AA--GAA-AA-AG-G--TTAAG--A--TG----C-ATACA-AC-CGG--CATA-----C-T-----T-T-CAA------TT-TT-CGA--CAGTA-TG---CAA-G---AAAT--TA--T--TG--T--AT-A-CGGGA--AAGGG-TTTC-CCT---TT-TGCG-CC-AAA---A-G-TTT---T--TCAC-GTCAC---T-TTTC--TGC--TT---TA-TCA-ATCT--AA----T-ACGCA-A----ATAAGTATAA--------TCTTCCAACAC-CA-CC-AT--GCATTGCGTA-TCGTTG-AATTTCACA--G-T-TTCTTC--AGC--TGGTCTT-AAGA--TTATGTAA-AT-T-A-G-A-TGTTC-CT-AAAACGCAGTGAAGATCGG-AATAAGGAGAAGAT-ATA-GG--CGATTTCAAAGTCACAATAGGATATGAATATC-AACTACA-TAC-AT------TCTATG-CATAA--A-AAAT-----GAA-GAGTGATTTGG---TAAAAA-AA--AA-AGgt
gi|14                         :          tcaaTGTTT-T--A-CAT-------AGA--T-----A--A---------TTTTCAA--TGAAAAA---TATT-C-----GA---------------------CGTTT----ATA-C--T-GA-TAC--------------------TTCCATA-CTT-T-TTCA-CCAA--GGGCA---GTTCGTTTATCATTA----C--G-TG----AC------A-T---TA------------T-AA-ATTTT--AG-AACCAA--C---AAA--AA-T-----GTTT-GC-AATAATC-GCA------AAAT-TTC--AACG-AT-A-T--TGAC--TATAATTGT--A-TTGA-C-CGATCCCT---TT---------TAC-----------AATGCATTT-GCTTAC-TTTAC-A-TTA--CCT-GAAATG-TGCTTGG--AAACA-A-GTTC-
gi|7                          :          cttcaaTTT-TGTAGCAT---GAATGTA--C-----CGTA---------TT--CAA--AGAAAAAAT-TATT-CACCCAGA-GGA--GTGACAATCCGGA-ACGTTC----ATAAC--C-GA-TATT--GTA--G-T-A---GGA-TTCCTTA-CAT-T-TTCAGACAA--GA-CT---GTT-GTTTTATATCAATCTT--G-TG----GCACAGT-A-TGCCCA-T-T-GGTGTT-G-TACATTTTTAGG-AATTAC--A---AAA--A--T-----GATTTGTTATTAATT--TA------ATAT-TGCCAGACG-AT-A-TTGCGAC--TA-AA---TTGC-AGGG-C-CGACCCTT---TTG-------ATAT-T---GAGAC-AATAAAATTTA---AC-TT-ACGA-TTA--CATCGAAAAGCTGTTTGG--AAA-A-A-CCTC-TC-C-GT-ATAA-AAACGAA-AAATG-CTGTTAAA--AAGTGCTCAC-GTACA-ATGCGGGCCATA-----C-T-----T-TCTAAGTAACTTT-TT-GGAACCAGTATTG---CAA-GA--A--A--GA--T--TG--TAGAT-A-TGGGAAGAGGGG-TT---CCC---TTATGCGATCAAGA---A-G-C
gi|8                          :             cataagagtTA-CATGGAT--GGTATTC-----A--A---------TT--CAA--A-----A---TATT-C-----GA-G-A--ACGA--ATC---A-ACGTTC----ATA-C--C-GA-TACCTAGTA--C-T-AATAGGC-TTCCATA--ATAT-TTCA-TTAG--GG-CA---GGT-GATTATCATCA----T--G-TG----AC----T-A-T---CA-CGT-GACAT-----A-ATTTT--AA-AACAAA--C---AAA--AAAT-----GATT-GA-AATAATT-GAA------AAAT--GC--AACC-AT-A-T--CGAC--TA-TA---T--T-TAGG-C-CTACCATC---TTT-------AAAT-C---GTAA--AACAAAGTT-T---GC-TTTAC-A-TTAGTC-T-GAAAAG-TGCTGGG--ATC-A-A-GTTA-TC-T-G--ATAA-AA--GGATGACAG-T--ATAAA--A--TG----C-ATTGA-ATGCAG--CATA-----C-T-----TATTTTA------TT-TT-AAA--GAGTA-CG---GAA-GGA-A--T--CA--T--CA--G--AT-G-CAGGT--AAGTG-TT---TCT---T-------TA-AGA---A-G-TTG---C--TC-CAATCACTTTT-TTTC--TGA--TA---TA-TCA-ATTT--AA----T-A-
gi|2                          :                                                      gtgattT--CAA--AGAAAAAGCATATCGC-----GA-G-ACAGTTA--ATCG--A-ACGTTC----CTA-TTTC-AA-TAT---GTA--G-T-A---GGT-TAGCTTAACAT-TCTTCA-ACAAG-AA-TTTGCGTT--TCTATTAGCA----CCTG-TG----AC------A-T----G-CGTAGATGTTGTGTA-ATT----AGCAATTAA--CAAACAA--A--TTCATCGATT-AT-TTT--TT-GCA------AAATGTGC--ACCG-A--A-T----GC--GA-AA---T--ATAACAGC-CGATCCTTGATTTG-------ATATAT---AAGAGCAA-AAAATT-A---CT-TTTAC-A-TTA--CAT-GAAAA---GTTTGGG-AAA-A-A-CTTC-TC-C--T-ACTA-AA--AAA-ACTAGTT--TTAAA--A--TG----C-ATACA-AC-CGG--C-TA-----CAT-----T-TTCAA------TT-AT-TGA--CAGTA-TG---CAA-GGAAA--T--TAACT--TC--T--AT-AGCG-----AAGGG-TT---TCTCTCTT-TGCC-TC-CGA---A-G-ATT------TC-C-ATCAC---T-TTTC--CGC--TT---TA-TCACA--T--GA----TAA-ACG-T----ATA--TATAAGATATCAATCTTCCCACAT-CGCCC-AT--GCATTGCGTACTCGTTGC-ATTTCAAAGCG-T-TTCTTCA-GGC--TG-TCGT-GAT---TTATGTAATAT-TCG-C-A-TGTTCACT---TACGCAGTGAAGTGCGC-GATAAGG-GAAGATGATG-TGGCCGATTTCAAAGTCAC-GACTGATATGAATATC--ACAACA-TACTAT------TCCTTA-CATCA--A-AAATC----GCA-AGTCGATTGGA---T-TAAA-CA-AAA-AGAAGCCATA
gi|9                          :                caatcataaatagtgtcgttacatgtccgtgcatctaggggctaT--CAA--TGAAAAA---TATA-C-----GA-G-A--ACGA--ATC---A-ACATTC----ATA-C--C-AG-TAC---CGA--A-T-A---GAC-TTCCACA-CAT-T-TTCATATAG--GC-AG---GGT-GTTTATTATTA----C--G-TG----GC----T-A-T---TA-CGT-GCCATT-A-TA-CATTC--AG-CACCGG--CG--CAA--A--T-----GATT-AT-AATAATC-GCA------AGAT-TGC--AACG-AT-A-T--CGAC--TA-TA---T--G-CAGG-C-CAATTCCT---TTT-------ATTT-T---GAAA--ATCAAAGCT-T---AC-ACTGC-A-TTA--CCT-GAAACG-TGCTGGG--AAC-A-A-ATTT-TC-CGGT-AT-A-TA--GAA-AGTGG-T--TTAAA--A--TG----C-ATGTA-AAGCAG--CATATCTTTT-T-----T-TTTTA------TT-TT-GGA--GAGTA-TG---CAA-GAA-A--T--TA--T--CC--G--ATGA-AAGGA--AGAGG-TT---CTT---TT-TGTG-actattgacaagaaagtgttcgttacaatcgagaccttgtacgcttgataacgtta
gi|6                          :                                                           aa--CAA--AGAAAAA---TATC-A-----GA-G-A--GTGA--ATC---A-ACATTC----ATA-T--C-GA-TAC---ATA--A-T-A---GGA-TT-------------TCA-CTAA--GA-CT---GTT-GTTTATCATCA----C--G-TG----AC----T-A-T---CA-CGT-GATATC-G-TA-ATTTT--AG-AATTAA--C---AAA--AA-T-----GATT-GT-ATTAATT-GCA------AAAT-TGC--AACG-AT-A-T--TGAC--TA-AA---T--A-CAAG-C-CGACTCTT---TTG-------ATAT-T---GAGA--AATAAAGCC-A---AC-TTTAC-A-TTA--AAT-CCAAAG-TGTTGGG--AGA-A-A-CTTC-TC-T-GT-ATAA-AA--GAA-AATGA-T--TCAAA--A--TG----C-ATCCA-ATGCTT--CATA-----C-T-----T-TTTAA------TT-TT-TGA--CAGTA-TG---GAA-GAA-A--T--TA--T--TG--T--AT-A-CGGGA--AAGGGTTT---CCG---CT-TGTG-TC-AGA---A-G-TTT---CTTCC-C--TCAC---T-ATTC--TGA--TA---TA-TGA-ATTT--AA----T-ACGTA-A----ATAAGTATAT------AAACTTCCAACAT-TT-CC-AT--GCACTGTATA-TCGTTGCAATTTTACA--T-T-TTCTTC--AGC--TAGTCGT-AAAA-ATT-CGTAG-AT-T-G-G-A-TGTAC-CT-AAAACGCAGTAATGATTGG-AATTAGGAGACGAT-ATA-GGGGCGA
gi|10                         :                                                                     GAAAAA---TATT-C-----GA-A-G--GTTA--AT----ATACGTTG----ATA-T--A-GA-TAC----TAAGT-C-A---GT--CTCCATA-CAT-T-TTCA-CCAA--GA-CT---GGT-TTTTATTATCA----T--G-TG----AC----------------------ATT-G-TA-ACTTC--CG-AATTA-------CAAATA--T-----GATT-AT-AGTAAAT-ACAAATTACAAAT-TGC--AACG-AC-A-T--TGACAGTA-AA---C-----AGA-C-TAAACTGT---GTC-------TTAT-T---GAGA--AATAAAGTT-C---AT-TTTAG-A-TTA---AC-GGAAAA--GT--------A-A-T-GTCC-TG-C-G--ATAA-AAG-GGA-AGTGG-T--TTAAA--A--TG----C-ATCCA-ATGCTG--TATA-----C-T-----TATTTGA------TT-TT-AGA--CAACA-GG---CAA-G---
gi|15                         :                                                                          cttaaatatcttgcaagggaaatattaagtT----A-ACATTC----ATA-T--C-GA-TAC---CTA--G-T-A---GGT-TTCCAAA-CAT-T-TTCA-TTAA--AG-CG---GAA-GTTTATTAT-A----C-----------C----T-A-T---CA-CGT-GACACT-A-TA-AATTT--AG-AATCAG------CAA--A--T-----ACTT-GT-AATAATC-ACA------AAAT-TGC--ATCG-AT-A-T--CTAC--TA-TA---T--T-CAGG-C-CGAc
gi|6                          :                                                                                                                                         gtgtttaatatggatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacTATCA----C--G-TG----AT----A-G-T---CA-CGT-GATGtacc
gi|12                         :                                                                                                                                                                                                                                                                                                                           caaagaaaaatatcagagagtgaatcaacattcatatcgatacataataggatttcactaagactgttgtttat---GAGA--AGTAAAATT-A---AC-TTTAC-A-TTA--CAT-AAAAAG-AGTTGGG--ATA-A-A-CTTT-TC-C-GT-ATAA-AA--GAA-AATGG-T--TTAAA--A--TG----C-ATACA-ACGCGG--CGTA-----C-T-----T-TTCAA------TT-TT-CGA--CAGTA-TG---CAGTGC--A--T--TA--C--TG--T--AT-A-CGAGA--AAGGGTTT---CCC---TT-TGCG-TC-AAA---A-ATTTT---T--CC-C-ATCACT--T-TTTT--TGC--TT---TA-TCA-ATTT--AA----T-ACGTA-A----ATAAGTATAT------AATCTTCCAAAAT-CG-CC-AT--GCATTGCGTA-TTGCTGCAATTTCACA--G-A-TTCCTC--AGC--TGGTCGT-AAGA-tcgtaattttagaattaacaaaaatgattgtattaattgcaaaattgcaacgatattgactaaatacaagccgactcttttgatattgagaaataaagccaactttacattaaatccaaagtgttgggagaaacttctctgtataaaagaaaatgattcaaaatgcatccaatgcttcatactttttaatttttgacagtatggaagaaattattgtatacgggaaagggtttccgcttgtgtcagaagtttcttccctcactattctgatatatgaatttaatacgtaaataagtatataaacttccaacatttccatgcactgtatatcgttgcaattttacattttcttcagctagtcgtaaaaattcgtagattggatgtacctaaaacgcagtaatgattggaattaggagacgatataggggcga
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                  AAAG-TGTTCGG--AGC-A-A-GTTA--C-C-A--ATAA-AA--GCACGATCT-C--CTGAA--A--TG----C-ATA-------------TG-----C-T-----T-TTTAA------TT-TT-CAA--GAATA-TG---CAA-GAA-A--T--TA--A--CA--G--AT-G-CGGTG--AGGAG-TT---TAG---TT-TATG-TA-AAA---A-G-CTA---CT-TC-C-ATCGC---T-ATTC--TGA--TA---TA-TCT-ATGT--AA----T-
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 aaaacttatttcagtaactgGCAG--TATA-----C-G-----T-TTTAA------TT-TT-CAA--GAGTA-TG---CAC-G---A--TACCA--T--CA--G--AT-G-CGGAA--AGGGT-TT---TCTG--TT-TGTG-TC-AGATGTA-G-CT-------CC-C-AGCAA---TGTTTTAATAC--ATGTATA-TCA-ATTTTTCA----T-A-AAA-GGAATATAAATATAT------TAACTTCAAACAA-CA-CC-AT--ACACTTTATA-TCGTTGAAATCTTACA--C-T-TTC-TCA-AGC--TGGTTGC-AAGA-ATTACGAAG-AC-T-A-G-A-TTGTC-TT-GAAATGCAGCGATGATTGG-GAT---TAGAAGAT-ATA-GAG-----------ATCAT---ATGATACGAACATC-AACTA
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  A------TT-TT-CGA--CAGTA-TG---CAA-G---AAAT--TA--T--TG--T--AC-A-CAGGA--AAGGG-TT---TCTC--TT-TGCA-TC-AGA---A-G-ATT---ac
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            T-A-CGGGA--AAGGG-TTT--CCC---CT-TGCG-CC-AAA---G-G-TTT---TT-CC-C-ATCAC---T-TGTC--TGC--TT---TA-TCA-TTCT--AA----T-ACGTA-A----ATAAGTATAT------AATCTTTCAACAT-CG-CC-AT--GCATTGCGTA-TCGTTGCATTTTCACA--G-T-TTCTTC--AGC--TGGTCGT-AAGA-ATTATGTAG-AT-T-A-G-A-TGTTC-CT-AAAACGCACTGAAGATCGG-AATAATGAGAAGAT-ATA-GGGGCGATTTCAAAGTCACAATAGGATATG-ATAT--AACTA-A-TCC-CT------TCTA-A-CATAA--A-AA

lowQualScore                  :                                                            333333333333333333333333                                           11111                                                                      111111               222222222222222222222                                            1111111111111                                                                                             11111111    11111                                                                                         1                    1111                     11111          111111                                   1111                   111   111                       1111111         111                                          111111111        111                                                               11                                            1                                                                                       2222                           22222                111      1111              11        
lowQualScore                  :                            8888  4    555  3 3    88888    222222222222222222222222    77       999    3 77777   3 44  3  33  22222      9999   7777   3   55 3  888888 3   2    2  3   3 3    44  3   3 222222 1 3         2 000000000000000000000 3 555  3   3  55  0 8888     77  3      44 7777777777777 3 3    3  333   3 55   999999    3   44    3 3  3 77    44  555555 3   66666 3         666  44444444    22222    77  3    3  6666  3     6    44 1 3     44 3    3     3 3 3    6  3 3 66  1 3  999   0   0 3 3 0   44 44  0000      3 22 0 44  44  11111 3  6  0  111111  2  1  33     2  5    66  3    0  0000  2      33     5  111   333  2    2  3  3 555  1  3333333 3 7     000 3    55   55  666 3    3   3 55        4 888888888        444             4  4  66 4           4                7777 4      88 777        4    44  3     5  5 77777 5     0  77           0 0    5   0      2   5   5           5      1                  55      0000   6  6      6     99 6    00000   8    8       444 0 0  0000   8          88 7  4   
lowQualScore                  :                            ....  .    ...  . .    .....    ........................    ..       ...    . .....   . ..  .  ..  .....      ....   ....   .   .. .  ...... .   .    .  .   . .    ..  .   . ...... . .         . ..................... . ...  .   .  ..  . ....     ..  .      .. ............. . .    .  ...   . ..   ......    .   ..    . .  . ..    ..  ...... .   ..... .         ...  ........    .....    ..  .    .  ....  .     .    .. . .     .. .    .     . . .    .  . . ..  . .  ...   .   . . . .   .. ..  ....      . .. . ..  ..  ..... .  .  .  ......  .  .  ..     .  .    ..  .    .  ....  .      ..     .  ...   ...  .    .  .  . ...  .  ....... . .     ... .    ..   ..  ... .    .   . ..        . .........        ...             .  .  .. .           .                .... .      .. ...        .    ..  .     .  . ..... .     .  ..           . .    .   .      .   .   .           .      .                  ..      ....   .  .      .     .. .    .....   .    .       ... . .  ....   .          .. .  .   
lowQualScore                  :                            5555  0    444  6 6    99999    666666666666666666666666    33       666    1 77777   1 22  1  99  55555      6666   8888   1   88 1  888888 1   1    1  1   1 1    11  1   1 111111 6 1         1 333333333333333333333 3 888  3   3  88  2 3333     99  3      66 8888888888888 3 3    3  888   3 33   666666    3   66    3 3  3 99    66  999999 3   00000 3         444  66666666    11111    99  8    3  6666  3     7    66 1 3     22 1    2     1 1 1    2  3 3 66  3 3  222   0   2 3 3 4   66 66  4444      3 44 7 22  22  99999 1  2  5  111111  9  2  99     9  7    88  1    5  8888  9      99     7  888   666  9    9  1  1 444  0  9999999 6 3     000 6    00   00  444 6    6   6 00        4 000000000        222             4  4  11 4           4                9999 4      00 888        4    88  2     0  0 22222 0     0  00           5 4    0   4      0   0   0           7      4                  99      8888   7  7      7     22 7    00000   0    0       000 8 8  8888   0          33 3  0   
consensus                     :                    AATCATAA----GT-GTTT-T-GT-A-CATG--T--GTACT--A---------T----------TCAA--AGAAAAA---TATC-C-----GAG-A--GT-GA--ATC---GACGTTC----ATA-T--CGA-TAC-GT-AG------T-AGGNTTCCNTA-CAT-T-TTCAN-CA-AGA-C-T----GTT-GTTTATTATCA----C--GTG----AC----TA-T---CA-CGT-GACGTTGT--A-ATTTT--AG-AATTAA--C--A-AA-------A-T-GATT-GT-ANTAA-TT-GCA------AAAT-TGC--AACG-A-TA-T--CGAC--TA-AA---T-ACA--G--G-CCGACCCTT---TTG-------ATAT-T---GAGA--AATAAAA-TTA---AC-TTTAC-ATTA--CAT-GAAAA--G-TGTTGGGAAA-A-A-CTTC-TC-C-GT-ATAA-AA---GAA-AATGG-T-TTAAA--A--TG----CATACA-ACGCGG--CA--TA-----C-TT-TTTAA------TT-TTCGA--CAGTA-TG-CAAGA-AA-TTATCGT----AT-ACGGGA--AAGGG-TT---CCT---TT-TGCG-TC-AG-A---AGNTT---C-T-C-C-ATCAC---T-TTTC--TGC--TT---T-ATCA-ATT-T--AATACGTA-A-A-------TAAGTATA-T-AATCTTCCAACAT-CG-CC--A-TGCATTGCGTA-TCGTTGCAATTTCACA--G-T-TTCTTCAAG---CTGGTCGT-AAGA-ATTATGTAG-AT-T-G-G-A-TGTTC-CT-AAAACGCAGTGAAGATCGG-AATAAGGAGAAGAT-ATA-GGGGCGATTTC-AAAGTCACAATATGATATGAATATC-AACTACA----TAC-AT-TCTATA-CATAA--A-AAAT-----GAA-GAGT-GATTTGG---TATAAA-AAGGAA-AGAATGCATA--TATTNTAG
Reference ( family-564 )      :                    AATCATAA----GT-GTTT-T-GT-A-CATG--T--GTACN--A---------T----------TCAA--AGAAAAA---TATC-C-----GAG-A--GT-GA--ATC---AACGTTC----ATA-T--CGA-TAC-GT-AG------T-AGGNTTCCNTA-CAT-T-TTCAN-CA-AGA-C-T----GTT-GTTTATTATCA----C--GTG----AC----TA-T---CA-CGT-GACGTTGT--A-ATTTT--AG-AATTAA--C--N-AA-------A-T-GATT-GT-ANTAA-TC-GCA------AAAT-TGC--AACG-A-TA-T--CGAC--TA-AA---T-ACA--G--G-CCGACCCTT---TTG-------ATAT-T---GAGA--AATAAAA-TTA---AC-TTTAC-ATTA--CAT-GAAAA--G-TGTTNGGAAA-A-A-CTTC-TC-C-GT-ATAA-AA---GAA-AATGG-T-TTAAA--A--TG----CATACA-ACGCGG--CA--TA-----C-TT-TTTAA------TT-TTCGA--CAGTA-TG-CAAGG-AA-TTATCGT----AT-ACGGGA--AAGGG-TT---CCT---TT-TGCG-TC-AG-A---AGNTT---C-T-C-C-ATCAC---T-TTTC--TGC--TT---T-ATCA-ATT-T--AATACGTA-A-A-------TAAGTATA-N-AATCTTCCAACAT-CG-CC--A-TGCATTGCGTA-TCGTTGCAATTTCACA--G-T-TTCTTCAAG---CTGGTCGT-AAGA-ATTATGTAG-AT-T-G-G-A-TGTTC-CT-AAAACGCAGTGAAGATCGG-AATAAGGAGAAGAT-ATA-GGGGCGATTTC-AAAGTCACAATATGATATGAATATC-AACTACA----TAC-AT-TCTATA-CATAA--A-AAAT-----GAA-GAGT-GATTTGG---TATAAA-AAGGAA-AGAATGCATA--TATTATAG
gi|1                          :                    AATCATAAAAAAGT-GTTTAT-GT-A-CATG--T--GTACG--AAGGCCCTGAT----------TGAATCAGAAAAA----GCC-G-----GAG-A--ATTAA--ATG---GACGCTTTGCAATA-T--CAAGTAT-GT-AG------T-AGGGATAATTA-GAT-T-TTCAC-AATAAA-C-T----GCT--TTTAA-ATCAAT--C--GTGCTGAAC----TAGT---CAACGT-GATGTTGTT-A-ATTTTC-AG-AATTAAAAT--A-AA-------A-T-A--T-GT--TTGA-TTTGCA------AAAT-TGC--AACGCA-TAAT--CGAA--TA-AA---T-ACACAG--G-C-GATCCTT---TTGTTTTGAGATAT-TTAAGAGA--GAAAAAA-TTT---AC-TT-AC-ATGA--CAT-GAAGAAGG-TGTGGGAAAA-A-A-CTTCATCGC-GTGAGAATAA---GAATAATTG-T-T-AAAGGA--TG----CATACAGACGCGC--CGACTGAG---C-TT-TTCAA------TTATTGGA--CAGTA-TGGCAAGG-AAATTATGGTGACTAT-AAGCGG--AAGGG-TTTCTCCT---TT-CGCC-TC--G-A---AGATTATTC-T-C-C-ATCAC---T-TT-C--TGCGTTT---T-ATCA-ATT-T--AATACGTA-A---------TAAAT-TA-GTAATCTTCCAACAT-CG-CC--AATGCAT-GCGTA-T-GTTGCAATTTCAAA--G-TCTTCTTC-AG---CTGGTCGTAAAGACATT-TGTAG-ATCT-G-C-AGTGTTCACTCCAAACGTCGTGACGATCGG-AA-ATGGAGAGATT-ATAGGGGGCGATTTCAAAAGTC-CAACATGATATGAATACT-GAATGCAACATTAT-ATCTTTATATCATAATGACAAATGGGGGGAG-GAGT-GGATTGGGTTTATAAATGGGGAAGAGAATG
gi|10                         :                         TAA----AT-ATCT-T-G----CAAG--G--GAAAT--A---------T----------TAAG--TGAAAAA---TATT-C-----GAA-G--GT-TA--ATA---TACGTTG----ATA-T--AGA-TAC-TA-AG------T-CAGTCTCCATA-CAT-T-TTCAC-CA-AGA-C-T----G---GTTT-TTAT----------------------TA-T---CA-TGT-GACATTGT--A-ACTTC--CG-AATT-A--C--A-AAT------A-T-GATT-AT-AGTAA-AT-ACAAATTACAAAT-TGC--AACG-A-CA-T--TGACAGTA-A------ACA--G--A-CTAAACTGT---GTC-------TTAT-T---GAGA--AATAAAG-TTC---AT-TTTAG-ATTA--ACG-GAAAA--G-T--------A-A-T-GTCC-TG-C-G--ATAA-AAG--GGA-AGTGG-T-TTAAA--A--TG----CATCCA-ATGCTG--TA--TA-----C-TTATTTGA------TT-TTAGA--CAACA-GG-CAAGgctaatattggacaagaaggtggt
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ctGCAG--TA--TA-----C-GT-TTTAA------TT-TTCAA--GAGTA-TG-CACGA-TA-CCATCAG----AT-GCGGAA--AGGGT-TT---TCTG--TT-TGTG-TC-AG-ATGTAGCTC---C-----C-AGCAA---TGTTTTAATAC--ATGTAT-ATCA-ATT-T----TTCATA-A-AAGGAATATAAATATA-T-TAACTTCAAACAA-CA-CC--A-TACACTTTATA-TCGTTGAAATCTTACA--C-T-TTCT-CAAG---CTGGTTGC-AAGA-ATTACGAAG-AC-T-A-G-A-TTGTC-TT-GAAATGCAGCGATGATTGG-GAT---TAGAAGAT-ATA-GAGA-----TC----------ATATGATACGAACATC-AACTAc
gi|12                         :                                                                                                                                                                                                                                                                                                                                                                                                                        ---GAGA--AGTAAAA-TTA---AC-TTTAC-ATTA--CAT-AAAAA--G-AGTTGGGATA-A-A-CTTT-TC-C-GT-ATAA-AA---GAA-AATGG-T-TTAAA--A--TG----CATACA-ACGCGG--CG--TA-----C-TT-TTCAA------TT-TTCGA--CAGTA-TG-CAGTG-CA-TTACTGT----AT-ACGAGA--AAGGGTTT---CCC---TT-TGCG-TC-AA-A---AATTT---T-TCC-C-ATCACT--T-TTTT--TGC--TT---T-ATCA-ATT-T--AATACGTA-A-A-------TAAGTATA-T-AATCTTCCAAAAT-CG-CC--A-TGCATTGCGTA-TTGCTGCAATTTCACA--G-A-TTCCTC-AG---CTGGTCGT-AAGA-ac
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               T-ACGGGA--AAGGG-TTT--CCC---CT-TGCG-CC-AA-A---GGTTT---T-T-C-CCATCAC---T-TGTC--TGC--TT---T-ATCA-TTC-T--AATACGTA-A-A-------TAAGTATA-T-AATCTTTCAACAT-CG-CC--A-TGCATTGCGTA-TCGTTGCATTTTCACA--G-T-TTCTTCA-G---CTGGTCGT-AAGA-ATTATGTAG-AT-T-A-G-A-TGTTC-CT-AAAACGCACTGAAGATCGG-AATAATGAGAAGAT-ATA-GGGGCGATTTC-AAAGTCACAATAGGATATG-ATAT--AACTA-A----TCC-CT-TCTA-A-CATAA--A-AA
gi|14                         :                           A----AT-GTTT-T----A-CATA--G--ATAAT--T---------T----------TCAA--TGAAAAA---TATT-C-----GA--------------------CGTTT----ATA-C--TGA-TAC------------------TTCCATA-CTT-T-TTCAC-CA-AGGGC-A----GTTCGTTTATCATTA----C--GTG----AC-----A-T---TA-TA------------A-ATTTT--AG-AACCAA--C--A-AA-------AAT-GTTT-GC-AATAA-TC-GCA------AAAT-TTC--AACG-A-TA-T--TGAC--TATAATTGT-ATT--G--A-CCGATCCCT---TT---------TAC-----------AATGCAT-TTGCTTAC-TTTAC-ATTA--CCT-GAAAT--G-TGCTTGGAAACA-A-GTTC-
gi|15                         :                                                                                                                      cttcA--ACT---AACATTC----ATA-T--CGA-TAC-CT-AG------T-AGGTTTCCAAA-CAT-T-TTCAT-TA-AAG-C-G----GAA-GTTTATTAT-A----C----------C----TA-T---CA-CGT-GACACTAT--A-AATTT--AG-AATCAG--C----AA-------A-T-ACTT-GT-AATAA-TC-ACA------AAAT-TGC--ATCG-A-TA-T--CTAC--TA-TA---T-TCA--G--G-CCGA
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                         gtgtttaatatggatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAA--G-TGTTCGGAGC-A-A-GTTA--C-C-A--ATAA-AA---GCACGATCT-C-CTGAA--A--TG----CATA---------------TG-----C-TT-TTTAA------TT-TTCAA--GAATA-TG-CAAGA-AA-TTAACAG----AT-GCGGTG--AGGAG-TT---TAG---TT-TATG-TA-AA-A---AGCTA---CTT-C-C-ATCGC---T-ATTC--TGA--TA---T-ATCT-ATG-T--AATtacc
gi|17                         : aaaacttatttcagtaactgATCATAA----GT-GTTT-T-GT-A-CATG--T--GTGCT--A---------TATATAT----TCAA--AGAAAA----T-TC-C-----GAT-A--GT-GA--ATC---GACGTTC----ATA-T--CGA-TTC-GT-AG------TAAGAATTCCTTA-CAC-T-TTCAT-CA-AGA-C-------TT-GTTTATTATC
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                A------TT-TTCGA--CAGTA-TG-CAAGA-AA-TTATTGT----AC-ACAGGA--AAGGG-TT---TCTC--TT-TGCA-TC-AG-A---AGATT---gt
gi|19                         :                    AATCATAA----AT-GTTT-T-GT-A-CATG--C--GTACT--A---------T----------TCAA--AGAAAAA---TATC-C-----GAG-A--GT-AA--A
gi|2                          :                   cAATCATAA----ATAGTGT-C-GTTA-CATG--TCCGTGC---A---------TCTAGGGGCTATCAA--AGAAAAAGCATATCGC-----GAG-ACAGT-TA--ATCG--AACGTTC----CTA-TTTCAA-TAT-GT-AG------T-AGGTTAGCTTAACAT-TCTTCAA-CA-AGA-A-TTTGCGTT--TCTATTAGCA----CCTGTG----AC-----A-T----G-CGTAGATGTTGTGTA-ATT----AGCAATTAA--C--A-AACAAATTCA-TCGATT-AT-TTT---TT-GCA------AAATGTGC--ACCG-A--A-TG-CGA------AA---T-ATA--ACAG-CCGATCCTTGATTTG-------ATATAT---AAGAGCAA-AAAA-TTA---CT-TTTAC-ATTA--CAT-GAAAA--G-T-TTGGGAAA-A-A-CTTC-TC-C--T-ACTA-AA---AAA-ACTAGTT-TTAAA--A--TG----CATACA-AC-CGG--C---TA-----CATT-TTCAA------TT-ATTGA--CAGTA-TG-CAAGGAAA-TTAACTT----CT-ATAGCG--AAGGG-TT---TCTCTCTT-TGCC-TC-CG-A---AGATT-----T-C-C-ATCAC---T-TTTC--CGC--TT---T-ATCACATGAT--AA-ACGTATATA-------TAAG-ATATC-AATCTTCCCACAT-CGCCC--A-TGCATTGCGTACTCGTTGC-ATTTCAAAGCG-T-TTCTTCAGG---CT-GTCGT---GA-TTTATGTAATAT-TCG-C-A-TGTTCACT---TACGCAGTGAAGTGCGC-GATAAGG-GAAGATGATG-TGGCCGATTTC-AAAGTCACGAC-TGATATGAATATC--ACAACA----TACTAT-TCCTTA-CATCA--A-AAAT-----CGC-AAGTCGATTGGA---T-TAAA-CA-AAA-AGAAGCCATAACTATT
gi|3                          :                    cATCATA-----GT-GTTT---GT-A-CATG--T--CT-CT--A---------T----------TCAAG-AGAAAAA---TATC-G-----GAG-A--GT-GA--ATC---GACGTTCT---ACA-TC-CGA-CAC-GTCCG------T-AGGAGTTCCTA-TAT-T-TTCAA-CA-AGA-C-T----GTT-TGTTAATATCA----CG-GTG----ACT---TA-T---CA-CGT-TATGTTGT----ATTTT--AG-AATTAA--C--A-AA-------A-T-TATT-GT-ATTAATTT-GC-------ACAT-TG---AACG-ATTA-T--CGAC--T---A---T-ACA--G--G-CCGATCCTT---TTA-------ATAT-TAAGGAGA--AA-AAAA--TA---AC-TTTACAATTA--CAT-G-AAA--G-TGT--GGAAA-ATA-CTTCGTC-C-GT-AT-A-AG---GAA-AATAG-T-TTAAA--A--TGC---CATAAA-TTTCGG--CA--TA-----C-TT-TTCAAT-----TT-TTCGA--GAGTA-TGTCACGA-AA-TTATTGT----AT-ACGTGA--AAGGG-TT---TCTC--TT-TGTG-T--AGTA---TGATT---T-T-C-C-ATAAC---T-TTTC--TGC--TT---TAATCA-ATT-TGAAATACGT------------TAAGTAT--T-AATCTTCCAA-ATGCG-CCGTA-TGCATTGCGTA-TCGTTGCAATTTCACA--ATT-TTCTTCAAGGCTTTGGTCGT-AA-A-ATTATATAG-AT-T-GTGCA-TGTT--CT-AAACGGCAGTGAAG-TCGGAAATAAAGAGA--AT-ATA--GGGCGATTCA-AAAGCCACAATATGATATGAATATCAAACAACAT---TAT-AT-TCTATA-CATAA--A-AAAT-----GGATGAGT-GCTTTGG---TAT--A-AAGGAA-AGAATGCATA--TATTATAGgacaagaaagtgttcgttacaatcgagaccttgtacgcttgataacgtta
gi|4                          :                    AATCATAT----GT-GTTT-T-GT-A-CATT--T--GTACA--A---------T----------TCAA--AGAAAAA---TATC-C-----GAA-A--GT-GA--AT----GACGTTC----ATA-T--CGA-TAC-GT-AT------T-AGGATTCCGTA-CAT-T-TTCAA-CA-AAA-C-T----GTT-GTTTATTATCA----C--GTG----AC----TA-T---CA-CGT-GATGTTTT--A-ATTTT--AG-AATTAA--T--T-AA-------A-T-GATT-GT-ATTAA-TT-GCA------AAAT-TGC--AACG-A-TA-T--CAAC--TA-AA---T-AAA--G--A-CCGACCCTT---TTG-------ATAT-T---GAGA--AATAAAA-TTA---AC-TTTAC-ATTA--CAT-GAAAA--A-TGTTTGGAAA-A-A-CTTC-TC-C-GT-ATAA-AA---GAA-AATCG-T-TTAAA--A--TG----CATACA-ACGCAG--CA--TA-----C-TT-TTCAA------TT-TTCGA--CAGTA-TG-CAAG---A-TTATTGT----AT-ACGGGA--AAGGG-TT---CCT---TT-TGCG-TC-AG-A---AGCTT---C-C-C-C-ATCAC---T-TTTC--TGC--TT---T-ATCA-ATT-T--AATA-ACA-G-A-------TAAGTATA-A-AATCTTCCAACAT-CG-CC--G-TGCATTGCGTA-TCGTTGCAATTCCACA--G-T-TTCGTC-GG---CTGTTCGT-GAGA-ATTATGTAG-AT-T-G-G-A-TGTTC-CT-AAAACGCAGTGAAGATCGG-AATAAGGAGAAGAT-ATA-GGGGCGATTTC-AAAATTATAAAATGATATGAATATC-AACTACA----CAC-AT-TCTATA-CATAA--A-AAAT-----GAA-GAGC-GATTTGG---TATAAA-AAGGAA-AGAATGCATA--T-TTTTAGgacaagacgtggtttcatgttatacctaacgtccactttgatatacggttagatagcgataa
gi|5                          :                          AA----GT-GTTT-T-GT-A-CATG--T--GTACT--A---------T----------TCAA--AGAAAAA---TATC-C-----GAG-A--GT-GA------------------------------TAA-GT-AA------T-AGGATTCCTTA-CAT-T-TTCAA-CA-AGA-C-T----GTT-GTTTATTA--------------------------T---CA-TGT-GAC-------------T--A-----TCA--C--G------------T-GAT--GT-TGTAA-TT-TTA------GAAT-T----AACA-A-AA-A--TGAT--TG-TA---T-TTA-------TTG-CCCTT---TTG-------A-AT-T---GAGA--AATAATA-T-A---ACATTTAC-ATTA--CAT-GAAAA--G-TGTTGGGAAA-A-AACTTC-TC-C-GT-ATAA-AA---GAA-AAAGG-T-T-AAG--A--TG----CATACA-AC-CGG--CA--TA-----C-TT-TC-AA------TT-TTCGA--CAGTA-TG-CAAGA-AA-TTATTGT----AT-ACGGGA--AAGGG-TTTC-CCT---TT-TGCG-CC-AA-A---AGTTT---T-T-CAC-GTCAC---T-TTTC--TGC--TT---T-ATCA-ATC-T--AATACGCA-A-A-------TAAGTATA----ATCTTCCAACAC-CA-CC--A-TGCATTGCGTA-TCGTTG-AATTTCACA--G-T-TTCTTCA-G---CTGGTCTT-AAGA--TTATGTAA-AT-T-A-G-A-TGTTC-CT-AAAACGCAGTGAAGATCGG-AATAAGGAGAAGAT-ATA-GG--CGATTTC-AAAGTCACAATAGGATATGAATATC-AACTACA----TAC-AT-TCTATG-CATAA--A-AAAT-----GAA-GAGT-GATTTGG---TAAAAA-AA--AA-AG
gi|6                          :                                                                                   tcCAA--AGAAAAA---TATC-A-----GAG-A--GT-GA--ATC---AACATTC----ATA-T--CGA-TAC-AT-AA------T-AGGA------------T-TTCAC-TA-AGA-C-T----GTT-GTTTATCATCA----C--GTG----AC----TA-T---CA-CGT-GATATCGT--A-ATTTT--AG-AATTAA--CA-A-AA-------A-T-GATT-GT-ATTAA-TT-GCA------AAAT-TGC--AACG-A-TA-T--TGAC--TA-AA---T-ACA--A--G-CCGACTCTT---TTG-------ATAT-T---GAGA--AATAAAG-CCA---AC-TTTAC-ATTA--AAT-CCAAA--G-TGTTGGGAGA-A-A-CTTC-TC-T-GT-ATAA-AA---GAA-AATGA-T-TCAAA--A--TG----CATCCA-ATGCTT--CA--TA-----C-TT-TTTAA------TT-TTTGA--CAGTA-TG-GAAGA-AA-TTATTGT----AT-ACGGGA--AAGGGTTT---CCG---CT-TGTG-TC-AG-A---AGTTT---CTT-C-C-CTCAC---T-ATTC--TGA--TA---T-ATGA-ATT-T--AATACGTA-A-A-------TAAGTATA-T-AAACTTCCAACAT-TT-CC--A-TGCACTGTATA-TCGTTGCAATTTTACA--T-T-TTCTTC-AG---CTAGTCGT-AAAA-ATT-CGTAG-AT-T-G-G-A-TGTAC-CT-AAAACGCAGTAATGATTGG-AATTAGGAGACGAT-ATA-GGGGCGA
gi|7                          :                       CATAA----GA-GTTT-TTGT-AGCATGAAT--GTACCGTA---------T----------TCAA--AGAAAAAAT-TATT-CACCCAGAGGA--GT-GACAATCCGGAACGTTC----ATAAC--CGA-TATTGT-AG------T-AGGATTCCTTA-CAT-T-TTCAGACA-AGA-C-T----GTT-GTTTTATATCAATCTT--GTG----GCACAGTA-TGCCCA-T-T-GGTGTTGT--ACATTTTTAGG-AATTAC--A--A-AA-------A-T-GATTTGTTATTAA-TT--TA------ATAT-TGCCAGACG-A-TA-TTGCGAC--TA-AA---TTGCA--G--GGCCGACCCTT---TTG-------ATAT-T---GAGAC-AATAAAATTTA---AC--TTACGATTA--CATCGAAAA--GCTGTTTGGAAA-A-A-CCTC-TC-C-GT-ATAA-AAACGAAA-AATGC-TGTTAAA--AAGTGCTCACGTACA-ATGCGGGCCA--TA-----C-TT-TCTAAGTAACTTT-TTGGAACCAGTATTG-CAAGA-AA--GATTGTAG--AT-ATGGGAAGAGGGG-TT---CCC---TTATGCGATCAAG-A---AG
gi|8                          :                                           T-A-CATG--G--ATGGT--A---------T----------TCAA--TTCAAAA---TATT-C-----GAG-A--AC-GA--ATC---AACGTTC----ATA-C--CGA-TAC-CT-AGTACTAAT-AGGCTTCCATA--ATAT-TTCAT-TA-GGG-C-A----GGT-GATTATCATCA----T--GTG----AC----TA-T---CA-CGT-GAC---AT--A-ATTTT--AA-AACAAA--CAAA-AA-------A-T-GATT-GA-AATAA-TT-GAA------AAA--TGC--AACC-A-TA-T--CGAC--TA-TA---T-TTA--G--G-CCTACCATC---TTT-------AAAT-C---GTAA--AACAAAG-TTT---GC-TTTAC-ATTAGTC-T-GAAAA--G-TGCTGGGATC-A-A-GTTA-TC-T-G--ATAA-AA---GGATGACAG-T-ATAAA--A--TG----CATTGA-ATGCAG--CA--TA-----C-TTATTTTA------TT-TTAAA--GAGTA-CG-GAAGG-AA-TCATCAG----AT-GCAGGT--AAGTG-TT---TCT---T-------TA-AG-A---AGTTG---C-T-C-CAATCACTTTT-TTTC--TGA--TA---T-ATCA-ATT-T--AATAc
gi|9                          :                                                                    gtgatt----------TCAA--TGAAAAA---TATA-C-----GAG-A--AC-GA--ATC---AACATTC----ATA-C--CAG-TAC-CG-AA------T-AGACTTCCACA-CAT-T-TTCAT-AT-AGG-CAG----GGT-GTTTATTATTA----C--GTG----GC----TA-T---TA-CGT-GCCATTAT--A-CATTC--AG-CACCGG--C--GCAA-------A-T-GATT-AT-AATAA-TC-GCA------AGAT-TGC--AACG-A-TA-T--CGAC--TA-TA---T-GCA--G--G-CCAATTCCT---TTT-------ATTT-T---GAAA--ATCAAAG-CTT---AC-ACTGC-ATTA--CCT-GAAAC--G-TGCTGGGAAC-A-A-ATTT-TC-CGGT-AT-A-TA---GAA-AGTGG-T-TTAAA--A--TG----CATGTA-AAGCAG--CA--TATCTTTT-TT-TTTTA------TT-TTGGA--GAGTA-TG-CAAGA-AA-TTATCCG----ATGAAAGGA--AGAGG-TT---CTT---TT-TGTG-

lowQualScore                  :                                                   1111111   22222222222222222                                                                                                                                  111111               1111111                                                                  111111111                                                          111111                          11111111    11111                                                                                          1                                              11111                                                    1111                   111   111                       1111111         111                                          111111111                                                                          11                                            1                                                                                       2222                           22222                111      1111              11        
lowQualScore                  :                            8888  4    555  3 3    1111111   88888888888888888 3  999999    77       999    8888888   3 44  3  44  6666  3     9999   4444 3  3   55  99999999 3   2    2  3   3 3    44  3   3 222222 1 3         0 2222222 3  7777  999999 3 555  3   3  33    77 3     77  3      44 6666  555555555 3 1  3  3 1     6   999999    3   44    3  3 3 77    44  111111 3   44 44 3         666  44444444    22222    77  3    3 77777  3     3 3   44 1 3     44 3  3       0 3 3    6  3 3 66    3  999   0   0 3 3 0   44 44  7777 3     3 22 0 44  44  11111 3  6  0  888888  2  44  33     2  5   2 2       0  0000  2      33     5  111   333  2    2  3   555 3 1  3333333 3 7     000 3    55   55  666  3   3   3 55        4 888888888        888             4  4  66 4           4                66  4  4    88 777        4    44  3     5  5 77777 5     0  77           0 0      5 0          5   5   4       5      1                  55      0000   6  6      6     99 6    00000   8    8       444 0 0  0000   8          88 7  1   
lowQualScore                  :                            ....  .    ...  . .    .......   ................. .  ......    ..       ...    .......   . ..  .  ..  ....  .     ....   .... .  .   ..  ........ .   .    .  .   . .    ..  .   . ...... . .         . ....... .  ....  ...... . ...  .   .  ..    .. .     ..  .      .. ....  ......... . .  .  . .     .   ......    .   ..    .  . . ..    ..  ...... .   .. .. .         ...  ........    .....    ..  .    . .....  .     . .   .. . .     .. .  .       . . .    .  . . ..    .  ...   .   . . . .   .. ..  .... .     . .. . ..  ..  ..... .  .  .  ......  .  ..  ..     .  .   . .       .  ....  .      ..     .  ...   ...  .    .  .   ... . .  ....... . .     ... .    ..   ..  ...  .   .   . ..        . .........        ...             .  .  .. .           .                ..  .  .    .. ...        .    ..  .     .  . ..... .     .  ..           . .      . .          .   .   .       .      .                  ..      ....   .  .      .     .. .    .....   .    .       ... . .  ....   .          .. .  .   
lowQualScore                  :                            5555  0    444  6 6    6666666   22222222222222222 6  666666    33       666    5555555   1 22  1  22  2222  1     6666   8888 1  1   88  55555555 1   1    1  1   1 1    11  1   1 111111 6 1         2 3333333 3  1111  666666 3 888  3   3  00    99 3     99  3      66 4444  999999999 3 2  3  3 0     7   666666    3   66    3  3 3 99    66  888888 3   66 66 3         444  66666666    11111    99  8    3 00000  3     3 3   66 1 3     22 1  1       2 1 1    2  3 3 66    3  222   0   2 3 3 4   66 66  1111 3     3 44 7 22  22  99999 1  2  5  222222  9  11  99     9  7   9 9       5  8888  9      99     7  888   666  9    9  1   444 1 0  9999999 6 3     000 6    00   00  444  6   6   6 00        4 000000000        222             4  4  11 4           4                11  4  4    00 888        4    88  2     0  0 22222 0     0  00           5 4      0 4          0   0   5       7      4                  99      8888   7  7      7     22 7    00000   0    0       000 8 8  8888   0          33 3  0   
consensus                     :                    AATCATAA----GT-GTTT-T-GT-A-CATG--T----GTA--------C--------T-AT------TCAA--AGAAAAA---TATC-C-----GAG-A--GT-GA--ATC---GA-CGTTC----ATA-T--C-GA-TAC-GTA-G------T-AGGNTTCCNTA-CAT-T-TTCAN-CA-AGA-C-T----GTT-GTTTATTATCA----C--G-TG----AC----T-A-T---CA-CGT-GACGTTGT--A-ATTTT--AG-AATTAA--C--A-AA-------A-T-GATT-GT-ANTAATT-GCA------AAAT-TGC--AACG-AT-A-T--CGAC--TA-AA---T-ACA--G--G-CCGACCCTT---TTG-------ATAT-T---GAGA--AATAAAA-TTA---AC-TTTAC-A-TTA--CAT-GAAAA--G-TG-TTGGGAAAA-A-CTTC-TC-C-GT-ATAA-AA---GAA-AATGG-T-TTAAA--A--TG----C-ATACA-ACGCGG--CA--TA-----C-TT-TTTAA------TT-TT-CGA--CAGTA-TG-CAA-G-AAATTATCGT----AT-ACGGGA--AAGGG-TT---CCT---TT-TGCG-TC-AGA---A-GNTT---C-T-C-C-ATCAC---T-TTTC--TGC--TT---TA-TCA-ATT-T--AATACGTA-A-A-------TAAGTATA-T-AATCTTCCAACAT-CG-CC--A-TGCATTGCGTA-TCGTTGCAATTTCACA--GT-TT-CTTCAAG---CTGGTCGT-AAGA-ATTATGTAG-AT-T-G-G-A-TGTTC-CT-AAAACGCAGTGAAGATCGGAA-TAAGGAGAAGAT-ATA-GGGGCGATTTC-AAAGTCACAATATGATATGAATATC-AACTACA----TAC-AT-TCTATA-CATAA--A-AAAT-----GAA-GAGT-GATTTGG---TATAAA-AAGGAA-AGAATGCATA--TATTNTAG
Reference ( family-564 )      :                    AATCATAA----GT-GTTT-T-GT-A-CATG--T----GTA--------C--------T-AT------TCAA--AGAAAAA---TATC-C-----GAG-A--GT-GA--ATC---GA-CGTTC----ATA-T--C-GA-TAC-GTA-G------T-AGGNTTCCNTA-CAT-T-TTCAN-CA-AGA-C-T----GTT-GTTTATTATCA----C--G-TG----AC----T-A-T---CA-CGT-GACGTTGT--A-ATTTT--AG-AATTAA--C--A-AA-------A-T-GATT-GT-ANTAATT-GCA------AAAT-TGC--AACG-AT-A-T--CGAC--TA-AA---T-ACA--G--G-CCGACCCTT---TTG-------ATAT-T---GAGA--AATAAAA-TTA---AC-TTTAC-A-TTA--CAT-GAAAA--G-TG-TTGGGAAAA-A-CTTC-TC-C-GT-ATAA-AA---GAA-AATGG-T-TTAAA--A--TG----C-ATACA-ACGCGG--CA--TA-----C-TT-TTTAA------TT-TT-CGA--CAGTA-TG-CAA-G-AAATTATCGT----AT-ACGGGA--AAGGG-TT---CCT---TT-TGCG-TC-AGA---A-GNTT---C-T-C-C-ATCAC---T-TTTC--TGC--TT---TA-TCA-ATT-T--AATACGTA-A-A-------TAAGTATA-T-AATCTTCCAACAT-CG-CC--A-TGCATTGCGTA-TCGTTGCAATTTCACA--GT-TT-CTTCAAG---CTGGTCGT-AAGA-ATTATGTAG-AT-T-G-G-A-TGTTC-CT-AAAACGCAGTGAAGATCGGAA-TAAGGAGAAGAT-ATA-GGGGCGATTTC-AAAGTCACAATATGATATGAATATC-AACTACA----TAC-AT-TCTATA-CATAA--A-AAAT-----GAA-GAGT-GATTTGG---TATAAA-AAGGAA-AGAATGCATA--TATTNTAG
gi|1                          :                    AATCATAAAAAAGT-GTTTAT-GT-A-CATG--T----GTA--------CGAAGGCCCTGAT------TGAATCAGAAAAA----GCC-G-----GAG-A--ATTAA--ATG---GA-CGCTTTGCAATA-T--C-AAGTAT-GTA-G------T-AGGGATAATTA-GAT-T-TTCAC-AATAAA-C-T----GCT--TTTAA-ATCAAT--C--G-TGCTGAAC----T-AGT---CAACGT-GATGTTGTT-A-ATTTTC-AG-AATTAAAAT--A-AA-------A-T-A--T-GT--TTGATTTGCA------AAAT-TGC--AACGCAT-AAT--CGAA--TA-AA---T-ACACAG--G-C-GATCCTT---TTGTTTTGAGATAT-TTAAGAGA--GAAAAAA-TTT---AC-TT-AC-A-TGA--CAT-GAAGAAGG-TG-TGGGAAAAA-A-CTTCATCGC-GTGAGAATAA---GAATAATTG-T-T-AAAGGA--TG----C-ATACAGACGCGC--CGACTGAG---C-TT-TTCAA------TTATT-GGA--CAGTA-TGGCAA-GGAAATTATGGTGACTAT-AAGCGG--AAGGG-TTTCTCCT---TT-CGCC-TC--GA---A-GATTATTC-T-C-C-ATCAC---T-TT-C--TGCGTTT---TA-TCA-ATT-T--AATACGTA-A---------TAAAT-TAGT-AATCTTCCAACAT-CG-CC--AATGCAT-GCGTA-T-GTTGCAATTTCAAA--GTCTT-CTTC-AG---CTGGTCGTAAAGACATT-TGTAG-ATCT-G-C-AGTGTTCACTCCAAACGTCGTGACGATCGGAA--ATGGAGAGATT-ATAGGGGGCGATTTCAAAAGTC-CAACATGATATGAATACT-GAATGCAACATTAT-ATCTTTATATCATAATGACAAATGGGGGGAG-GAGT-GGATTGGGTTTATAAATGGGGAAGAGAATG
gi|10                         :                         TAA----AT-ATCT-T-G----CAAG--G----GAA--------A--------T-AT------TAAG--TGAAAAA---TATT-C-----GAA-G--GT-TA--ATA---TA-CGTTG----ATA-T--A-GA-TAC-TAA-G------T-CAGTCTCCATA-CAT-T-TTCAC-CA-AGA-C-T----G---GTTT-TTAT-----------------------T-A-T---CA-TGT-GACATTGT--A-ACTTC--CG-AATT-A--C--A-AAT------A-T-GATT-AT-AGTAAAT-ACAAATTACAAAT-TGC--AACG-AC-A-T--TGACAGTA-A------ACA--G--A-CTAAACTGT---GTC-------TTAT-T---GAGA--AATAAAG-TTC---AT-TTTAG-A-TTA--ACG-GAAAA--G-TA-ATG----------TCC-TG-C-G--ATAA-AAG--GGA-AGTGG-T-TTAAA--A--TG----C-ATCCA-ATGCTG--TA--TA-----C-TTATTTGA------TT-TT-AGA--CAACA-GG-CAA-G-gctaatattggacaagaaggtggt
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ctGCAG--TA--TA-----C-GT-TTTAA------TT-TT-CAA--GAGTA-TG-CAC-G-ATACCATCAG----AT-GCGGAA--AGGGT-TT---TCTG--TT-TGTG-TC-AGATGTA-GCTC---C-----C-AGCAA---TGTTTTAATAC--ATGTATA-TCA-ATT-T----TTCATA-A-AAGGAATATAAATATA-T-TAACTTCAAACAA-CA-CC--A-TACACTTTATA-TCGTTGAAATCTTACA--CT-TT-CT-CAAG---CTGGTTGC-AAGA-ATTACGAAG-AC-T-A-G-A-TTGTC-TT-GAAATGCAGCGATGATTGGGA-T---TAGAAGAT-ATA-GAGA-----TC----------ATATGATACGAACATC-AACTAc
gi|12                         :                                                                                                                                                                                                                                                                                                                                                                                                                               ---GAGA--AGTAAAA-TTA---AC-TTTAC-A-TTA--CAT-AAAAA--G-AG-TTGGGATAA-A-CTTT-TC-C-GT-ATAA-AA---GAA-AATGG-T-TTAAA--A--TG----C-ATACA-ACGCGG--CG--TA-----C-TT-TTCAA------TT-TT-CGA--CAGTA-TG-CAG-T-GCATTACTGT----AT-ACGAGA--AAGGGTTT---CCC---TT-TGCG-TC-AAA---A-ATTT---T-TCC-C-ATCACT--T-TTTT--TGC--TT---TA-TCA-ATT-T--AATACGTA-A-A-------TAAGTATA-T-AATCTTCCAAAAT-CG-CC--A-TGCATTGCGTA-TTGCTGCAATTTCACA--GA-TT-CCTC-AG---CTGGTCGT-AAGA-ac
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         T-ACGGGA--AAGGG-TTT--CCC---CT-TGCG-CC-AAA---G-GTTT---T-T-C-CCATCAC---T-TGTC--TGC--TT---TA-TCA-TTC-T--AATACGTA-A-A-------TAAGTATA-T-AATCTTTCAACAT-CG-CC--A-TGCATTGCGTA-TCGTTGCATTTTCACA--GT-TT-CTTCA-G---CTGGTCGT-AAGA-ATTATGTAG-AT-T-A-G-A-TGTTC-CT-AAAACGCACTGAAGATCGGAA-TAATGAGAAGAT-ATA-GGGGCGATTTC-AAAGTCACAATAGGATATG-ATAT--AACTA-A----TCC-CT-TCTA-A-CATAA--A-AA
gi|14                         :                           A----AT-GTTT-T----A-CATA--G----ATA--------A--------T-TT------TCAA--TGAAAAA---TAT-----------------------TC---GA-CGTTT----ATA-C--T-GA-TAC------------------TTCCATA-CTT-T-TTCAC-CA-AGGGC-A----GTTCGTTTATCATTA----C--G-TG----AC------A-T---TA-TA------------A-ATTTT--AG-AACCAA--C--A-AA-------AAT-GTTT-GC-AATAATC-GCA------AAAT-TTC--AACG-AT-A-T--TGAC--TATAATTGT-ATT--G--A-CCGATCCCT---TT---------TAC-----------AATGCAT-TTGCTTAC-TTTAC-A-TTA--CCT-GAAAT--G-TGCTTGGAAACA-A-GTTC-
gi|15                         :                                                                                                                                    cttcA-CATTC----ATA-T--C-GA-TAC-CTA-G------T-AGGTTTCCAAA-CAT-T-TTCAT-TA-AAG-C-G----GAA-GTTTATTAT-A----C-----------C----T-A-T---CA-CGT-GACACTAT--A-AATTT--AG-AATCAG--C----AA-------A-T-ACTT-GT-AATAATC-ACA------AAAT-TGC--ATCG-AT-A-T--CTAC--TA-TA---T-TCA--G--G-CCGA
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                            gtgtttaatatggatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaactaAAA--G-TG-TTCGGAGCA-A-GTTA--C-C-A--ATAA-AA---GCACGATCT-C-CTGAA--A--TG----C-ATA---------------TG-----C-TT-TTTAA------TT-TT-CAA--GAATA-TG-CAA-G-AAATTAACAG----AT-GCGGTG--AGGAG-TT---TAG---TT-TATG-TA-AAA---A-GCTA---CTT-C-C-ATCGC---T-ATTC--TGA--TA---TA-TCT-ATG-T--AATtacc
gi|17                         : aaaacttatttcagtaactgATCATAA----GT-GTTT-T-GT-A-CATG--T----GTG--------C--------T-ATATATATTCAA--AGAAAA----T-TC-C-----GAT-A--GT-GA--ATC---GA-CGTTC----ATA-T--C-GA-TTC-GTA-G------TAAGAATTCCTTA-CAC-T-TTCAT-CA-AGA-C-------TT-GTTTATTATC
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         A------TT-TT-CGA--CAGTA-TG-CAA-G-AAATTATTGT----AC-ACAGGA--AAGGG-TT---TCTC--TT-TGCA-TC-AGA---A-GATT---gt
gi|19                         :                    AATCATAA----AT-GTTT-T-GT-A-CATG--C----GTA--------C--------T-AT------TCAA--AGAAAAA---TATC-C-----GAG-A--GT-AA--A
gi|2                          :                   cAATCATAA----ATAGTGT-C-GTTA-CATG--TCCGTGCATCTAGGGGC--------T-AT-------CAA--AGAAAAAGCATATCGC-----GAG-ACAGT-TA--ATC---GAACGTTC----CTA-TTTC-AA-TAT-GTA-G------T-AGGTTAGCTTAACAT-TCTTCAA-CA-AGA-A-TTTGCGTT--TCTATTAGCA----CCTG-TG----AC------A-T----G-CGTAGATGTTGTGTA-ATT----AGCAATTAA--C--A-AACAAATTCA-TCGATT-AT-TTT--TT-GCA------AAATGTGC--ACCG-A--A-TG-CGA------AA---T-ATA--ACAG-CCGATCCTTGATTTG-------ATATAT---AAGAGCAA-AAAA-TTA---CT-TTTAC-A-TTA--CAT-GAAAA--G-T--TTGGGAAAA-A-CTTC-TC-C--T-ACTA-AA---AAA-ACTAGTT-TTAAA--A--TG----C-ATACA-AC-CGG--C---TA-----CATT-TTCAA------TT-AT-TGA--CAGTA-TG-CAAGG-AAATTAACTT----CT-ATAGCG--AAGGG-TT---TCTCTCTT-TGCC-TC-CGA---A-GATT-----T-C-C-ATCAC---T-TTTC--CGC--TT---TA-TCACATGAT--AA-ACGTATATA-------TAAG-ATA-TCAATCTTCCCACAT-CGCCC--A-TGCATTGCGTACTCGTTGC-ATTTCAAAGCGT-TT-CTTCAGG---CT-GTCGT---GA-TTTATGTAATAT-TCG-C-A-TGTTCACT---TACGCAGTGAAGTGCGCGA-TAAGG-GAAGATGATG-TGGCCGATTTC-AAAGTCACGAC-TGATATGAATATC--ACAACA----TACTAT-TCCTTA-CATCA--A-AAAT-----CGC-AAGTCGATTGGA---T-TAAA-CA-AAA-AGAAGCCATAACTATT
gi|3                          :                    cATCATA-----GT-GTTT---GT-A-CATG--T----CT---------C--------T-AT------TCAAG-AGAAAAA---TATC-G-----GAG-A--GT-GA--ATC---GA-CGTTCT---ACA-T--CCGA-CAC-GTCCG------T-AGGAGTTCCTA-TAT-T-TTCAA-CA-AGA-C-T----GTT-TGTTAATATCA----C--GGTG----AC----TTA-T---CA-CGT-TATGTTGT--A--TTTT--AG-AATTAA--C--A-AA-------A-T-TATT-GT-ATTAATTTGCA------CA-T-TG---AACG-ATTA-T--CGAC--TA------T-ACA--G--G-CCGATCCTT---TTA-------ATAT-TAAGGAGA--AA-AAAA-T-A---AC-TTTAC-AATTA--CAT-GAAA---G-TG-T--GGAAAATA-CTTCGTC-C-GT-ATAA-G----GAA-AATAG-T-TTAAA--A--TG----CCATAAA-TTTCGG--CA--TA-----C-TT-TTCAA------TT-TTTCGA--GAGTA-TGTCAC-G-AAATTATTGT----AT-ACGTGA--AAGGG-TT---TCTC--TT-TGTG-T--AGT---ATGATT---T-T-C-C-ATAAC---T-TTTC--TGC--TT---TAATCA-ATT-TGAAATACGT------------TAAGTAT--T-AATCTTCCAA-ATGCG-CCGTA-TGCATTGCGTA-TCGTTGCAATTTCACA--AT-TTTCTTCAAGGCTTTGGTCGT-AA-A-ATTATATAG-AT-T-GTGCA-TGTTC--T-AAACGGCAGTGAAG-TCGGAAATAAAGAGAA--T-ATA-GGG-CGATTCA-AAAGCCACAATATGATATGAATATCAAACAACAT---TAT-AT-TCTATA-CATAA--A-AAAT-----GGATGAGT-GCTTTGG---TAT--A-AAGGAA-AGAATGCATA--TATTATAGgacaagaaagtgttcgttacaatcgagaccttgtacgcttgataacgtta
gi|4                          :                    AATCATAT----GT-GTTT-T-GT-A-CATT--T----GTA--------C--------A-AT------TCAA--AGAAAAA---TATC-C-----GAA-A--GT-GA--AT----GA-CGTTC----ATA-T--C-GA-TAC-GTA-T------T-AGGATTCCGTA-CAT-T-TTCAA-CA-AAA-C-T----GTT-GTTTATTATCA----C--G-TG----AC----T-A-T---CA-CGT-GATGTTTT--A-ATTTT--AG-AATTAA--T--T-AA-------A-T-GATT-GT-ATTAATT-GCA------AAAT-TGC--AACG-AT-A-T--CAAC--TA-AA---T-AAA--G--A-CCGACCCTT---TTG-------ATAT-T---GAGA--AATAAAA-TTA---AC-TTTAC-A-TTA--CAT-GAAAA--A-TG-TTTGGAAAA-A-CTTC-TC-C-GT-ATAA-AA---GAA-AATCG-T-TTAAA--A--TG----C-ATACA-ACGCAG--CA--TA-----C-TT-TTCAA------TT-TT-CGA--CAGTA-TG-CAA-G---ATTATTGT----AT-ACGGGA--AAGGG-TT---CCT---TT-TGCG-TC-AGA---A-GCTT---C-C-C-C-ATCAC---T-TTTC--TGC--TT---TA-TCA-ATT-T--AATA-ACA-G-A-------TAAGTATA-A-AATCTTCCAACAT-CG-CC--G-TGCATTGCGTA-TCGTTGCAATTCCACA--GT-TT-CGTC-GG---CTGTTCGT-GAGA-ATTATGTAG-AT-T-G-G-A-TGTTC-CT-AAAACGCAGTGAAGATCGGAA-TAAGGAGAAGAT-ATA-GGGGCGATTTC-AAAATTATAAAATGATATGAATATC-AACTACA----CAC-AT-TCTATA-CATAA--A-AAAT-----GAA-GAGC-GATTTGG---TATAAA-AAGGAA-AGAATGCATA--T-TTTTAGgacaagacgtggtttcatgttatacctaacgtccactttgatatacggttagatagcgataa
gi|5                          :                          AA----GT-GTTT-T-GT-A-CATG--T----GTA--------C--------T-AT------TCAA--AGAAAAA---TATC-C-----GAG-A--GT-GA--------------------------------TAA-GTA-A------T-AGGATTCCTTA-CAT-T-TTCAA-CA-AGA-C-T----GTT-GTTTATTATCA----T--G-TG----AC----T-A-T---CA-CGT-GATGTTGT--A-ATTTT--AG-AATTAA--C--A-AA-------------------AATGATT-GTA---------T-T----------T-A-T--TG----------------------------CCCTT---TTG-------A-AT-T---GAGA--AATAATA-T-A---ACATTTAC-A-TTA--CAT-GAAAA--G-TG-TTGGGAAAA-AACTTC-TC-C-GT-ATAA-AA---GAA-AAAGG-T-T-AAG--A--TG----C-ATACA-AC-CGG--CA--TA-----C-TT-TC-AA------TT-TT-CGA--CAGTA-TG-CAA-G-AAATTATTGT----AT-ACGGGA--AAGGG-TTTC-CCT---TT-TGCG-CC-AAA---A-GTTT---T-T-CAC-GTCAC---T-TTTC--TGC--TT---TA-TCA-ATC-T--AATACGCA-A-A-------TAAGTATA----ATCTTCCAACAC-CA-CC--A-TGCATTGCGTA-TCGTTG-AATTTCACA--GT-TT-CTTCA-G---CTGGTCTT-AAGA--TTATGTAA-AT-T-A-G-A-TGTTC-CT-AAAACGCAGTGAAGATCGGAA-TAAGGAGAAGAT-ATA-GG--CGATTTC-AAAGTCACAATAGGATATGAATATC-AACTACA----TAC-AT-TCTATG-CATAA--A-AAAT-----GAA-GAGT-GATTTGG---TAAAAA-AA--AA-AG
gi|6                          :                                                                                       tcCAA--AGAAAAA---TATC-A-----GAG-A--GT-GA--ATC---AA-CATTC----ATA-T--C-GA-TAC-ATA-A------T-AGGATT-------------TCAC-TA-AGA-C-T----GTT-GTTTATCATCA----C--G-TG----AC----T-A-T---CA-CGT-GATATCGT--A-ATTTT--AG-AATTAA--C--A-AA-------AAT-GATT-GT-ATTAATT-GCA------AAAT-TGC--AACG-AT-A-T--TGAC--TA-AA---T-ACA--A--G-CCGACTCTT---TTG-------ATAT-T---GAGA--AATAAAG-CCA---AC-TTTAC-A-TTA--AAT-CCAAA--G-TG-TTGGGAGAA-A-CTTC-TC-T-GT-ATAA-AA---GAA-AATGA-T-TCAAA--A--TG----C-ATCCA-ATGCTT--CA--TA-----C-TT-TTTAA------TT-TT-TGA--CAGTA-TG-GAA-G-AAATTATTGT----AT-ACGGGA--AAGGGTTT---CCG---CT-TGTG-TC-AGA---A-GTTT---CTT-C-C-CTCAC---T-ATTC--TGA--TA---TA-TGA-ATT-T--AATACGTA-A-A-------TAAGTATA-T-AAACTTCCAACAT-TT-CC--A-TGCACTGTATA-TCGTTGCAATTTTACA--TT-TT-CTTC-AG---CTAGTCGT-AAAA-ATT-CGTAG-AT-T-G-G-A-TGTAC-CT-AAAACGCAGTAATGATTGGAA-TTAGGAGACGAT-ATA-GGGGCGA
gi|7                          :                       CATAA----GA-GTTT-TTGT-AGCATGAAT----GTA--------CCG------T-AT------TCAA--AGAAAAAAT-TATT-CACCCAGAGGA--GT-GACAATCCGGAA-CGTTC----ATAAC--C-GA-TATTGTA-G------T-AGGATTCCTTA-CAT-T-TTCAGACA-AGA-C-T----GTT-GTTTTATATCAATCTT--G-TG----GCACAGT-A-TGCCCA-T-T-GGTGTTGT--ACATTTTTAGG-AATTAC--A--A-AA-------A-T-GATTTGTTATTAATT--TA------ATAT-TGCCAGACG-AT-A-TTGCGAC--TA-AA---TTGCA--G--GGCCGACCCTT---TTG-------ATAT-T---GAGAC-AATAAAATTTA---AC--TTACGA-TTA--CATCGAAAA--GCTG-TTTGGAAAA-A-CCTC-TC-C-GT-ATAA-AAACGAAA-AATGC-TGTTAAA--AAGTGCTCAC-GTACA-ATGCGGGCCA--TA-----C-TT-TCTAAGTAACTTT-TT-GGAACCAGTATTG-CAA-G-AAA-GATTGTAG--AT-ATGGGAAGAGGGG-TT---CCC---TTATGCGATCAAGA---A-G
gi|8                          :                                           T-A-CATG--G----ATG--------G--------T-AT------TCAA--TTCAAAA---TATT-C-----GAG-A--AC-GA--ATC---AA-CGTTC----ATA-C--C-GA-TAC-CTA-GTACTAAT-AGGCTTCCATA--ATAT-TTCAT-TA-GGG-C-A----GGT-GATTATCATCA----T--G-TG----AC----T-A-T---CA-CGT-GAC---AT--A-ATTTT--AA-AACAAA--CAAA-AA-------A-T-GATT-GA-AATAATT-GAA------AAA--TGC--AACC-AT-A-T--CGAC--TA-TA---T-TTA--G--G-CCTACCATC---TTT-------AAAT-C---GTAA--AACAAAG-TTT---GC-TTTAC-A-TTAGTC-T-GAAAA--G-TG-CTGGGATCA-A-GTTA-TC-T-G--ATAA-AA---GGATGACAG-T-ATAAA--A--TG----C-ATTGA-ATGCAG--CA--TA-----C-TTATTTTA------TT-TT-AAA--GAGTA-CG-GAA-G-GAATCATCAG----AT-GCAGGT--AAGTG-TT---TCT---T-------TA-AGA---A-GTTG---C-T-C-CAATCACTTTT-TTTC--TGA--TA---TA-TCA-ATT-T--AATAc
gi|9                          :                                                                            gtgatt------TCAA--TGAAAAA---TATA-C-----GAG-A--AC-GA--ATC---AA-CATTC----ATA-C--C-AG-TAC-CGA-A------T-AGACTTCCACA-CAT-T-TTCAT-AT-AGG-CAG----GGT-GTTTATTATTA----C--G-TG----GC----T-A-T---TA-CGT-GCCATTAT--A-CATTC--AG-CACCGG--C--GCAA-------A-T-GATT-AT-AATAATC-GCA------AGAT-TGC--AACG-AT-A-T--CGAC--TA-TA---T-GCA--G--G-CCAATTCCT---TTT-------ATTT-T---GAAA--ATCAAAG-CTT---AC-ACTGC-A-TTA--CCT-GAAAC--G-TG-CTGGGAACA-A-ATTT-TC-CGGT-AT-A-TA---GAA-AGTGG-T-TTAAA--A--TG----C-ATGTA-AAGCAG--CA--TATCTTTT-TT-TTTTA------TT-TT-GGA--GAGTA-TG-CAA-G-AAATTATCCG----ATGAAAGGA--AGAGG-TT---CTT---TT-TGTG-