lowQualScore : 33333333333333333333333
lowQualScore : 0 4 33 00000000000000000000000 6
lowQualScore : . . .. ....................... .
lowQualScore : 3 2 77 55555555555555555555555 0
consensus : ACGGACAACGCCATA--ACATAATACG-----------------C-CCCGTCTAAAGACGGGCGTATAAAAAA
Reference ( gi|3 ) : ACAGACAATGCCATA--ACATAATACA-----------------C-TCTGTCTAAAAACGGGCGTATAAAAAA
gi|6 : ACAGACAATGCCATA--ACATAATATG-----------------C-CCATTCTAAAGATAGGCGTATAAA
gi|9 : gACAAACA---CCATA--ATATAATACA-----------------C-CCCATCTAAAGACAGACGTATAAAAA
gi|8 : gACAAACA---CCATA--ATATAATACA-----------------C-CCCATCTAAAGACGGACATATAAAAA
gi|5 : gACAGATGATGCCATA--AGAAAATACG-----------------C-CCCATCTAAAGATAGGTGTATAAAA
gi|12 : gACGGAAAATGCCAAA--ACATAATATG-----------------C-CCTTTCTAAAGACAGGCATGTA
gi|1 : gACGGACAATGCCATATAATATAATACAAGACGTGTTGTTATATCCATCCGTCTAAAGACGGGCGTATAAAAA
gi|14 : gACGGACAGCGCCATA--ACATA---CA----------------------GTCTGAAGACGGGCGTATAAA
gi|16 : ggACCGACAACGCCATA--ACAT-ATA--------------------------CTGAAGACGGGCGTA
gi|10 : gacggCGGACAACGTCATA--ACAT--TACA-----------------C-CTCGTCTAAAGACGGGCGTATGAAA
gi|11 : GGCAATGCCACA--ACACAATACA-----------------C-CCTGTCTACAGATGGGCATATAAAAAc
gi|13 : GACAACACCATA--ATATAATACA-----------------C-CCTCTCTAAAGATGGACGAATGAA
gi|7 : GACAA-AACATA--ATATA-TACA-----------------C-CC-ATCTAAAGACAGACGTATAAAAA
gi|4 : gaagACAACGC-ATA--ACATAATAC--------------------TC-GTCTGAAGACGGACGTATAAAAAAg
gi|15 : acggaCCACA--ACATAATACA-----------------C-CCCATCTAAAGATGGGTGTATAAAAAgaa
gi|2 : ctCTATA--CTATAATACG-----------------A-TCAGTCAAAAGACGGGCGTATAAAAAA
Alignments
lowQualScore : 22222222222222222
lowQualScore : 2 5 33 11111111111111111 33 44
lowQualScore : . . .. ................. .. ..
lowQualScore : 7 3 44 88888888888888888 44 66
consensus : ACGGA-CAA-CGCCATA--ACATAATACG----------------CC--CCGTCTAAAGACGGGCGTATAAAAAA
Reference ( family-552 ) : ACGGA-CAA-CGCCATA--ACATAATACG----------------CC--CCGTCTAAAGACGGGCGTATAAAAAA
gi|1 : ACGGA-CAA-TGCCATATAATATAATACAAGACGTGTTGTTATATCCATCCGTCTAAAGACGGGCGTATAAAAA
gi|10 : gCGGA-CAA-CGTCATA--ACAT--TACA----------------CC--TCGTCTAAAGACGGGCGTATGAAA
gi|11 : GG-CAA-TGCCACA--ACACAATACA----------------CC--CTGTCTACAGATGGGCATATAAAAAc
gi|12 : ACGGA-AAA-TGCCAAA--ACATAATATG----------------CC--CTTTCTAAAGACAGGCATGTA
gi|13 : gGA-CAA-CACCATA--ATATAATACA----------------CC--CTCTCTAAAGATGGACGAATGAA
gi|14 : ACGGA-CAG-CGCCATA--ACATA-------------------------CAGTCTGAAGACGGGCGTATAAA
gi|15 : ggCCACA--ACATAATACA----------------CC--CCATCTAAAGATGGGTGTATAAAAA
gi|16 : ctACCGA-CAA-CGCCATA--ACAT-ATA--------------------------CTGAAGACGGGCGTA
gi|2 : gacggGGA-AAA-C-CTATA--CTATAATACG----------------AT--CAGTCAAAAGACGGGCGTATAAAAAA
gi|3 : gacgACAGA-CAA-TGCCATA--ACATAATACA----------------CT--CTGTCTAAAAACGGGCGTATAAAAAAtgtaaatga
gi|4 : ACGGAACAA-CGC-ATA--ACATAATAC---------------------TCGTCTGAAGACGGACGTATAAAAAA
gi|5 : ACAGA-TGA-TGCCATA--AGAAAATACG----------------CC--CCATCTAAAGATAGGTGTATAAAAgaa
gi|6 : gACAGA-CAA-TGCCATA--ACATAATATG----------------CC--CATTCTAAAGATAGGCGTATAAA
gi|7 : gGGA-CAA-AAC-ATA--ATATA-TACA----------------CC--C-ATCTAAAGACAGACGTATAAAAA
gi|8 : gaaGA-CAAACACCATA--ATATAATACA----------------CC--CCATCTAAAGACGGACATATAAAAAg
gi|9 : GA-CAAACACCATA--ATATAATACA----------------CC--CCATCTAAAGACAGACGTATAAAAA
Alignments
lowQualScore : 22222222222222222
lowQualScore : 2 5 33 11111111111111111 33 44
lowQualScore : . . .. ................. .. ..
lowQualScore : 7 3 44 88888888888888888 44 66
consensus : ACGGA-CAA-CGCCATA--ACATAATACG----------------CC--CCGTCTAAAGACGGGCGTATAAAAAA
Reference ( family-552 ) : ACGGA-CAA-CGCCATA--ACATAATACG----------------CC--CCGTCTAAAGACGGGCGTATAAAAAA
gi|1 : ACGGA-CAA-TGCCATATAATATAATACAAGACGTGTTGTTATATCCATCCGTCTAAAGACGGGCGTATAAAAA
gi|10 : gCGGA-CAA-CGTCATA--ACAT--TACA----------------CC--TCGTCTAAAGACGGGCGTATGAAA
gi|11 : GG-CAA-TGCCACA--ACACAATACA----------------CC--CTGTCTACAGATGGGCATATAAAAAc
gi|12 : ACGGA-AAA-TGCCAAA--ACATAATATG----------------CC--CTTTCTAAAGACAGGCATGTA
gi|13 : gGA-CAA-CACCATA--ATATAATACA----------------CC--CTCTCTAAAGATGGACGAATGAA
gi|14 : ACGGA-CAG-CGCCATA--ACATA-------------------------CAGTCTGAAGACGGGCGTATAAA
gi|15 : ggCCACA--ACATAATACA----------------CC--CCATCTAAAGATGGGTGTATAAAAA
gi|16 : ctACCGA-CAA-CGCCATA--ACAT-ATA--------------------------CTGAAGACGGGCGTA
gi|2 : gacggGGA-AAA-C-CTATA--CTATAATACG----------------AT--CAGTCAAAAGACGGGCGTATAAAAAA
gi|3 : gacgACAGA-CAA-TGCCATA--ACATAATACA----------------CT--CTGTCTAAAAACGGGCGTATAAAAAAtgtaaatga
gi|4 : ACGGAACAA-CGC-ATA--ACATAATAC---------------------TCGTCTGAAGACGGACGTATAAAAAA
gi|5 : ACAGA-TGA-TGCCATA--AGAAAATACG----------------CC--CCATCTAAAGATAGGTGTATAAAAgaa
gi|6 : gACAGA-CAA-TGCCATA--ACATAATATG----------------CC--CATTCTAAAGATAGGCGTATAAA
gi|7 : gGGA-CAA-AAC-ATA--ATATA-TACA----------------CC--C-ATCTAAAGACAGACGTATAAAAA
gi|8 : gaaGA-CAAACACCATA--ATATAATACA----------------CC--CCATCTAAAGACGGACATATAAAAAg
gi|9 : GA-CAAACACCATA--ATATAATACA----------------CC--CCATCTAAAGACAGACGTATAAAAA
blockSeqs : A A . A . CG
blockSeqs : . A . A . TG
blockSeqs : . . . G . TT
blockSeqs : . . . A . TC
blockSeqs : . . . A . AG
blockSeqs : . . . G . CA
blockSeqs : . . . A . AG
blockSeqs : . . . G . TG
blockSeqs : . . . G . CG
blockSeqs : . . . A . CA
blockSeqs : . . . A . AT
blockSeqs : . . . A . CA
blockSeqs : . . . . . CA
blockSeqs : . . . . . A
blockSeqs : . . . .
blockSeqCons : ** A**************** **
originalCons : ACGGA-CAA-CGCCATA--ACATAATACG----------------CC--CCGTCTAAAGACGGGCGTATAAAAAA
finalCons : ACGGA-CAA-CGCCATA--ACATAATACA----------------CC--CCGTCTAAAGACGGGCGTATAAAAAA
Alignments
lowQualScore : 1111111111111111
lowQualScore : 2 5 33 6666666666666666 33 44
lowQualScore : . . .. ................ .. ..
lowQualScore : 7 3 44 6666666666666666 44 66
consensus : ACGGA-CAA-CGCCATA--ACATAATACG----------------CC--CCGTCTAAAGACGGGCGTATAAAAAA
Reference ( family-552 ) : ACGGA-CAA-CGCCATA--ACATAATACA----------------CC--CCGTCTAAAGACGGGCGTATAAAAAA
gi|1 : ACGGA-CAA-TGCCATATAATATAATACAAGACGTGTTGTTATATCCATCCGTCTAAAGACGGGCGTATAAAAA
gi|10 : gCGGA-CAA-CGTCATA--ACAT--TACA----------------CC--TCGTCTAAAGACGGGCGTATGAAA
gi|11 : GG-CAA-TGCCACA--ACACAATACA----------------CC--CTGTCTACAGATGGGCATATAAAAAc
gi|12 : ACGGA-AAA-TGCCAAA--ACATAATATG----------------CC--CTTTCTAAAGACAGGCATGTA
gi|13 : gGA-CAA-CACCATA--ATATAATACA----------------CC--CTCTCTAAAGATGGACGAATGAA
gi|14 : ACGGA-CAG-CGCCATA--ACATA---CA----------------------GTCTGAAGACGGGCGTATAAA
gi|15 : ggCCACA--ACATAATACA----------------CC--CCATCTAAAGATGGGTGTATAAAAA
gi|16 : ctACCGA-CAA-CGCCATA--ACAT-ATA--------------------------CTGAAGACGGGCGTA
gi|2 : gacggGGA-AAA-C-CTATA--CTATAATACG----------------AT--CAGTCAAAAGACGGGCGTATAAAAAA
gi|3 : gacgACAGA-CAA-TGCCATA--ACATAATACA----------------CT--CTGTCTAAAAACGGGCGTATAAAAAAtgtaaatga
gi|4 : ACGGAACAA-CGC-ATA--ACATAATAC---------------------TCGTCTGAAGACGGACGTATAAAAAA
gi|5 : ACAGA-TGA-TGCCATA--AGAAAATACG----------------CC--CCATCTAAAGATAGGTGTATAAAAgaa
gi|6 : gACAGA-CAA-TGCCATA--ACATAATATG----------------CC--CATTCTAAAGATAGGCGTATAAA
gi|7 : gGGA-CAA-AAC-ATA--ATATA-TACA----------------CC--C-ATCTAAAGACAGACGTATAAAAA
gi|8 : gaaGA-CAAACACCATA--ATATAATACA----------------CC--CCATCTAAAGACGGACATATAAAAAg
gi|9 : GA-CAAACACCATA--ATATAATACA----------------CC--CCATCTAAAGACAGACGTATAAAAA