lowQualScore : 111111111111111111
lowQualScore : 5555555 11 1 22 2 2 2 2 444444444444444444 11 1 11111 1 1 1 4444444 2222222222 1111111111111 222222222 11
lowQualScore : 0000000 22 5 77 0 3 7 6 0 0 2 2 3 111111111111111111 55 0 2 55 88888 0 6 6 4 4 0 3 4 1111111 9999 2 9999999999 0000000000000 4 888888888 77 6 66
lowQualScore : ....... .. . .. . . . . . . . . . .................. .. . . .. ..... . . . . . . . . ....... .... . .......... ............. . ......... .. . ..
lowQualScore : 0000000 00 0 55 0 0 5 0 0 0 5 5 0 555555555555555555 22 0 5 00 55555 0 0 7 8 4 3 0 0 0000000 4444 9 0000000000 3333333333333 4 000000000 44 0 00
consensus : NATATGATACAAAATGTCCTGTCGAAAGAAGTATCAAACNAAACCTCCAAATTCATACCTNANATGTNCGCGTCATTGCGATTGT-TGCGCGAGAAGGCACGT-GCATTGGAATTCACCTTTTT-CATTAGATATTG-ATCACTACCATTATGAGATTT-CAATGACACATTTT-GGTACATAC-TA-ATAGAAAG----CTANAA---------TAT---A----AG---ATGATT-GGTTGTGC---A-----GAAGCA-CATTGAN-ACCGCTT
Reference ( gi|2 ) : TATATGATA-GAAAT-TCCCATTGAACGAA--ATCAA-CAAAAATTCTGAAT-CATAC-TCACATGTTCGCGT-AT-GC-ATTGTGCGCGTGAGAAGGCACGT-GCATTGGAATTCACATTTTT-CGTTAGATATTG-ATCGCTACCATTATGAGATTT-CAATGATACATATT-GGTACAT-C-TA-ATAGAAAG----CTAGAA---------AAT---A----AG---ATGATT-GGTTGTGC---G-----GAAGCA-TACTGAC-ACCACTT
gi|1 : ATATGATACAAAATGTCCTGTCGAAAGAAGTATCAA-CAAAA-TTCTAAATTCATAC-TCACATGTGCGCGTCATTGCGATTGT-TGCGCGAGTAG-CACGTTGCAATGGAATTCATCTTTTT-CAGTAGATATTGCATCACTACCATTATGAGATTTCCAATGA-ATATATT-AGTACAT-T-CA-ATAGACAG----CTAG-A---------TAT---A----GA---ATGATTGGGTTGTGCCAAA-----GAAGCA-TATTGACAACCACTT
gi|5 : TTGAAAAAA--ATTAAACCAAACCTCCAAAT-CATACCTGAAATGTTTGCGT--------------GC-----AA---ACGA-G-ATT--AAT---CTTTTTT-CATTAAAT--TG-ATCACTACCATAATGCGATTT-C-ATGACACAAA----GAACAT------ATAGAACG----CTACCA---------AATGTAA----AGTGAATTATT-GTTTG-GC---A-----GAAGCA-CATTGAC-ttt
gi|3 : GAGAAAGCATGT-GCATTGGGATTCACCTTTTTTCATTATATATTG-AACGCTATCATTATGAGATTT-CAATGATATATGTT-GGCACAT-A-TT-ATAGAAAG----CAACAA---------TAT---A---------GTGATT-GGTTG
gi|4 : cGAGAAGGCACGT-GCATTGCAATTAAACTTTTT-CATAAGATATTG-ATCTATATTATTTTGATATTT-CAATGACACCTTTTGGGTACGT----------ACAG----CAAGAA---------TGC---A----AG---GTGATT-GTTTGTAT---A-----GAAGCA-CATTGAT-ACCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccccgttacaattagtactag
gi|10 : cTAGATATTG-ATCACTACCATTGTGAGATTT-CAAGGACACATTTT-GGTATATAC-T--ATAGAttttttgttaaaagggggttggggaacattcgtaacggccctcgttacaatcaaatct
gi|8 : aactgcgttgcaccttttttcactatcattaaAAATATCG-ATCACTACCATTATGAGATTT-CAATGACATATTTT-GGTACAT-T-GT-ATAAAAAGTATTTTAAAAGTTTCGCAGAAT---GTGATAG---ATGACT-GGTTTTGT---GGGCATGAAGCACTATTGA--ACCg
gi|12 : CTACCATTATGAGATTT-TAGTGAAGCAT-TT-GGTACATAC-TATATAGAAAG----CTACAA---------TAT---A----AG---CTGATT-GGTTGTGC---A-----GAAGTA-CAttttt
gi|6 : aTATGATATTT-CAATGACACAATTT-GGTAAATAC-TA--TATAAAG----CTATAA---------TGT---A----AG---GTGATT-GGTTGTGC---A-----GAAGCA-CATTGAA-ACCACTTt
gi|7 : GAGATTC-CAGTGAGACAGTTC-GTTACAT-AGTA-A-AGAAAG----CTAGAT---------TGT---A----AG---ATGAAT-GTTTGTGC---A-----GAAGCA-CATTGAG-ACCGCCTttaaattagggatgttggggaggggggactccgtaatggtccccgttacaattagta
gi|16 : accactgctggtacgATTTT-GGTACATAC-TA--TAAAAAG----CTAGAA---------TAT---A----AG---ATGATT-GGTtctaaaaggggaggggggggggggcatccgca
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): GCTAAAATGTAGACGATTGGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCCATTACAATTAGTACTAGT
Unaligned ( gi|11 ): CTTGCATTAAAACAAATGACACCCACTTGCTGAAATGGCGGGAATGTTTGGGGAACATCCGTAACGCGTCCCCGTTACAATTAGTACTAGT
Unaligned ( gi|13 ): ATAAAAGAAAATGGCACCTCTTTGTAAATGGGGGACCTTTGTGAACATCTGTAACGATCCTCGTTACA
Unaligned ( gi|14 ): AAAGATGAAGACGGTTTGCAAGAACAACCTTTAACGGTCACCCGTACCATATTACAAGACTAGTT
Unaligned ( gi|15 ): AGGGGTTTGGGGAACATCCGTACTGGTCCTCATTACATATGGAACTAG
Alignments
lowQualScore : 1 1 33 2 11 2 2 44444444444444 2222222 111 11111111111111 11
lowQualScore : 5 5 0 00 3 1 55 0 3 3 1 1 1 00000000000000 99 6 6 3 8888888 000 5 4 4 3 44 3 666 2 55555555555555 8888 666 55 8888 4 55 66 888 5 5 33 2
lowQualScore : . . . .. . . .. . . . . . . .............. .. . . . ....... ... . . . . .. . ... . .............. .... ... .. .... . .. .. ... . . .. .
lowQualScore : 0 0 7 33 7 0 77 7 7 3 0 0 0 77777777777777 00 7 7 2 3333333 000 0 0 0 2 55 6 444 3 55555555555555 5555 555 55 5555 0 55 99 888 0 0 22 0
consensus : NATATGATACGAAATGTCCCGTCGAAAGAA--ATCAA-CAAAANCTCTAAAT-CATAC-TCACATGTTCGCGT-AT-GCGATTGT-CGCGCGAGAAGGCACG-TGCATTGGAATTCACCTTTTT-------CATTA---GATATTG-ATCGCTACCATTATG-AGATTT-CAATGACACATTTT-GGTACA---TACTA-ATAG-------AAAGCT----A--GAATGTA--AGGTG----ATT-GG--TTGT--GC---A-GAAGCAC-ATTGA-NACCACTT
Reference ( family-520 ) : NATATGATACAAAATGTCCTGTCGAAAGAAGTATCAAACNAAACCTCCAAATTCATACCTNANATGTNCGCGTCATTGCGATTGT-TGCGCGAGAAGGCACG-TGCATTGGAATTCACCTTTTT-------CATTA---GATATTG-ATCACTACCATTATG-AGATTT-CAATGACACATTTT-GGTACA---TACTA-ATAG-------AAAGCT----A--NAATATA--AGATG----ATT-GG--TTGT--GC---A-GAAGCAC-ATTGA-NACCGCTT
gi|1 : ATATGATACAAAATGTCCTGTCGAAAGAAGTATCAA-CAAAAT-TCTAAATTCATAC-TCACATGTGCGCGTCATTGCGATTGT-TGCGCGAGTA-GCACGTTGCAATGGAATTCATCTTTTT-------CAGTA---GATATTGCATCACTACCATTATG-AGATTTCCAATGA-ATATATT-AGTACA---TTC-A-ATAG-------ACAGCT----A--G-ATATA--GAATG----ATTGGG--TTGT--GCCAAA-GAAGCAT-ATTGACAACCACTT
gi|10 : -TGCGTTG-----CACCTTTTTTCACTATCATTAATAGATATTG-ATCACTACCATTGTG-AGATTT-CAAGGACACATTTT-GGTATA---TACT--ATAG-------Attt
gi|12 : aacACTACCATTATG-AGATTT-TAGTGAAGCA-TTT-GGTACA---TACTATATAG-------AAAGCT----A--CAATATA--AGCTG----ATT-GG--TTGT--GC---A-GAAGTAC-ATg
gi|16 : ATTTT-GGTACA---TACTA--TAA-------AAAGCT----A--GAATATA--AGATG----ATT-GG--T
gi|2 : ATATGATA-GAAAT-TCCCATTGAACGAA--ATCAA-CAAAAATTCTGAAT-CATAC-TCACATGTTCGCGT-AT-GC-ATTGTGCGCGTGAGAAGGCACG-TGCATTGGAATTCACATTTTT-------CGTTA---GATATTG-ATCGCTACCATTATG-AGATTT-CAATGATACATATT-GGTACA---T-CTA-ATAG-------AAAGCT----A--GAAAATA--AGATG----ATT-GG--TTGT--GC---G-GAAGCAT-ACTGA-CACCACTT
gi|3 : tCGAGAAAGCATG-TGCATTGGGATTCACCTTTTTT------CATTA---TATATTG-AACGCTATCATTATG-AGATTT-CAATGATATATGTT-GGCACA---TATT--ATAG-------AAAGCA----A--CAATATA----GTG----ATT-GG--TTG
gi|4 : CGAGAAGGCACG-TGCATTGCAATTAAACTTTTT-------CATAA---GATATTG-ATCTATATTATTTTG-ATATTT-CAATGACACCTTTTGGGTACG---TAC----------------AGCA----A--GAATGCA--AGGTG----ATT-GT--TTGT--AT---A-GAAGCAC-ATTGA-TACCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccccgttacaattagtactag
gi|5 : TTGAAAAAA--ATTAAACCAAACCTCCAAAT-CATACCTGAAATGTTTGCGT----GCAA--------ACGAGA------------TT--AAT---CTTTTTT-------CATTA---AAT--TG-ATCACTACCATAATG-CGATTT-C-ATGACACA---A-AGAACA---T-----ATAG-------AACGCT----ACCAAATGTA--AAGTGAATTATT-GT--TTG---GC---A-GAAGCAC-ATTGA-ttttttgttaaaagggggttggggaacattcgtaacggccctcgttacaatcaaatct
gi|6 : TATG-ATATTT-CAATGACACAATTT-GGTAAA---TACTA--TAT-------AAAGCT----A--TAATGTA--AGGTG----ATT-GG--TTGT--GC---A-GAAGCAC-ATTGA-AACCACTTc
gi|7 : -ACCACTGCTGGTACGGAGATTC-CAGTGAGACAGTTC-GTTACA---TAGTA-A-AG-------AAAGCT----A--GATTGTA--AGATG----AAT-GT--TTGT--GC---A-GAAGCAC-ATTGA-GACCGCCTttaaattagggatgttggggaggggggactccgtaatggtccccgttacaattagta
gi|8 : A---AATATCG-ATCACTACCATTATG-AGATTT-CAATGACATATTTT-GGTACATTGTATAA-AAAGTATTTTAAAAGTTTCGCA--GAATGTGATAGATG----ACT-GGTTTTGTGGGC---ATGAAGCACTATTGA--ACCtctaaaaggggaggggggggggggcatccgca
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GCTAAAATGTAGACGATTGGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCCATTACAATTAGTACTAGT
Unaligned ( gi|11 ): CTTGCATTAAAACAAATGACACCCACTTGCTGAAATGGCGGGAATGTTTGGGGAACATCCGTAACGCGTCCCCGTTACAATTAGTACTAGT
Unaligned ( gi|13 ): ATAAAAGAAAATGGCACCTCTTTGTAAATGGGGGACCTTTGTGAACATCTGTAACGATCCTCGTTACA
Unaligned ( gi|14 ): AAAGATGAAGACGGTTTGCAAGAACAACCTTTAACGGTCACCCGTACCATATTACAAGACTAGTT
Unaligned ( gi|15 ): AGGGGTTTGGGGAACATCCGTACTGGTCCTCATTACATATGGAACTAG
Alignments
lowQualScore : 1 1 11 1 11 1 1 33333333333333 2222222 111 11111111111111 11
lowQualScore : 5 5 0 88 3 33 3 3 66666666666666 99 6 6 3 8888888 000 5 2 4 3 44 3 666 2 55555555555555 8888 55 55 0 8888 4 55 66 888 5 5 33
lowQualScore : . . . .. . .. . . .............. .. . . . ....... ... . . . . .. . ... . .............. .... .. .. . .... . .. .. ... . . ..
lowQualScore : 0 0 7 33 3 00 3 3 77777777777777 00 7 7 2 3333333 000 7 7 0 2 55 6 444 3 55555555555555 5555 55 55 5 5555 0 55 99 888 0 0 22
consensus : NATATGATACGAAATGTCCCGTCGAAAGAA--ATCAA-CAAAANCTCTAAAT-CATAC-TCACATGTTCGCGT-AT-GCGATTGT-CGCGCGAGAAGGCACG-TGCATTGGAATTCACCTTTTT-------CATTA---GATATTG-ATCGCTACCATTATGAGATTT-CAATGACACATTTT-GGTACA---TACTA-ATAG-------AAAGCT----A--GAATGTA--AGGTG----ATT-GG--TTGT--GC---A-GAAGCAC-ATTGA-NACCACTT
Reference ( family-520 ) : NATATGATACGAAATGTCCCGTCGAAAGAA--ATCAA-CAAAANCTCTAAAT-CATAC-TCACATGTTCGCGT-AT-GCGATTGT-CGCGCGAGAAGGCACG-TGCATTGGAATTCACCTTTTT-------CATTA---GATATTG-ATCGCTACCATTATGAGATTT-CAATGACACATTTT-GGTACA---TACTA-ATAG-------AAAGCT----A--GAATGTA--AGGTG----ATT-GG--TTGT--GC---A-GAAGCAC-ATTGA-NACCACTT
gi|1 : ATATGATACAAAATGTCCTGTCGAAAGAAGTATCAA-CAAAAT-TCTAAATTCATAC-TCACATGTGCGCGTCATTGCGATTGT-TGCGCGAGTA-GCACGTTGCAATGGAATTCATCTTTTT-------CAGTA---GATATTGCATCACTACCATTATGAGATTTCCAATGA-ATATATT-AGTACA---TTC-A-ATAG-------ACAGCT----A--G-ATATA--GAATG----ATTGGG--TTGT--GCCAAA-GAAGCAT-ATTGACAACCACTT
gi|10 : -TGCGTTG-----CACCTTTTTTCACTATCATTAATAGATATTG-ATCACTACCATTGTGAGATTT-CAAGGACACATTTT-GGTATA---TACT--ATAG-------Attt
gi|12 : aacCTACCATTATGAGATTT-TAGTGAAGCA-TTT-GGTACA---TACTATATAG-------AAAGCT----A--CAATATA--AGCTG----ATT-GG--TTGT--GC---A-GAAGTAC-ATg
gi|16 : aATTTT-GGTACA---TACTA--TAA-------AAAGCT----A--GAATATA--AGATG----ATT-GG--T
gi|2 : ATATGATA-GAAAT-TCCCATTGAACGAA--ATCAA-CAAAAATTCTGAAT-CATAC-TCACATGTTCGCGT-AT-GC-ATTGTGCGCGTGAGAAGGCACG-TGCATTGGAATTCACATTTTT-------CGTTA---GATATTG-ATCGCTACCATTATGAGATTT-CAATGATACATATT-GGTACA---T-CTA-ATAG-------AAAGCT----A--GAAAATA--AGATG----ATT-GG--TTGT--GC---G-GAAGCAT-ACTGA-CACCACTT
gi|3 : tCGAGAAAGCATG-TGCATTGGGATTCACCTTTTTT------CATTA---TATATTG-AACGCTATCATTATGAGATTT-CAATGATATATGTT-GGCACA---TATT--ATAG-------AAAGCA----A--CAATATA----GTG----ATT-GG--TTG
gi|4 : CGAGAAGGCACG-TGCATTGCAATTAAACTTTTT-------CATAA---GATATTG-ATCTATATTATTTTGATATTT-CAATGACACCTTTTGGGTACG---TAC----------------AGCA----A--GAATGCA--AGGTG----ATT-GT--TTGT--AT---A-GAAGCAC-ATTGA-TACCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccccgttacaattagtactag
gi|5 : TTGAAAAAA--ATTAAACCAAACCTCCAAAT-CATACCTGAAATGTTTGCGT----GCAA--------ACGAGA------------TT--AAT---CTTTTTT-------CATTA---AAT--TG-ATCACTACCATAATGCGATTT-C-ATGACACA---A-AGAACA---T-----ATAG-------AACGCT----ACCAAATGTA--AAGTGAATTATT-GT--TTG---GC---A-GAAGCAC-ATTGA-ttttttgttaaaagggggttggggaacattcgtaacggccctcgttacaatcaaatct
gi|6 : TATGATATTT-CAATGACACAATTT-GGTAAA---TACTA--TAT-------AAAGCT----A--TAATGTA--AGGTG----ATT-GG--TTGT--GC---A-GAAGCAC-ATTGA-AACCACTTc
gi|7 : GAGATTC-CAGTGAGACAGTTC-GTTACA---TAGTA-A-AG-------AAAGCT----A--GATTGTA--AGATG----AAT-GT--TTGT--GC---A-GAAGCAC-ATTGA-GACCGCCTttaaattagggatgttggggaggggggactccgtaatggtccccgttacaattagta
gi|8 : accactgctggtacgA---AATATCG-ATCACTACCATTATGAGATTT-CAATGACATATTTT-GGTACATTGTATAA-AAAGTATTTTAAAAGTTTCGCA--GAATGTGATAGATG----ACT-GGTTTTGTGGGC---ATGAAGCACTATTGA--ACCtctaaaaggggaggggggggggggcatccgca
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GCTAAAATGTAGACGATTGGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCCATTACAATTAGTACTAGT
Unaligned ( gi|11 ): CTTGCATTAAAACAAATGACACCCACTTGCTGAAATGGCGGGAATGTTTGGGGAACATCCGTAACGCGTCCCCGTTACAATTAGTACTAGT
Unaligned ( gi|13 ): ATAAAAGAAAATGGCACCTCTTTGTAAATGGGGGACCTTTGTGAACATCTGTAACGATCCTCGTTACA
Unaligned ( gi|14 ): AAAGATGAAGACGGTTTGCAAGAACAACCTTTAACGGTCACCCGTACCATATTACAAGACTAGTT
Unaligned ( gi|15 ): AGGGGTTTGGGGAACATCCGTACTGGTCCTCATTACATATGGAACTAG
Alignments
lowQualScore : 1 1 11 1 11 1 1 33333333333333 2222222 111 11111111111111 11
lowQualScore : 5 5 0 88 3 33 3 3 66666666666666 99 6 6 3 8888888 000 5 2 4 3 44 3 666 2 55555555555555 8888 55 55 0 8888 4 55 66 888 5 5 33
lowQualScore : . . . .. . .. . . .............. .. . . . ....... ... . . . . .. . ... . .............. .... .. .. . .... . .. .. ... . . ..
lowQualScore : 0 0 7 33 3 00 3 3 77777777777777 00 7 7 2 3333333 000 7 7 0 2 55 6 444 3 55555555555555 5555 55 55 5 5555 0 55 99 888 0 0 22
consensus : NATATGATACGAAATGTCCCGTCGAAAGAA--ATCAA-CAAAANCTCTAAAT-CATAC-TCACATGTTCGCGT-AT-GCGATTGT-CGCGCGAGAAGGCACG-TGCATTGGAATTCACCTTTTT-------CATTA---GATATTG-ATCGCTACCATTATGAGATTT-CAATGACACATTTT-GGTACA---TACTA-ATAG-------AAAGCT----A--GAATGTA--AGGTG----ATT-GG--TTGT--GC---A-GAAGCAC-ATTGA-NACCACTT
Reference ( family-520 ) : NATATGATACGAAATGTCCCGTCGAAAGAA--ATCAA-CAAAANCTCTAAAT-CATAC-TCACATGTTCGCGT-AT-GCGATTGT-CGCGCGAGAAGGCACG-TGCATTGGAATTCACCTTTTT-------CATTA---GATATTG-ATCGCTACCATTATGAGATTT-CAATGACACATTTT-GGTACA---TACTA-ATAG-------AAAGCT----A--GAATGTA--AGGTG----ATT-GG--TTGT--GC---A-GAAGCAC-ATTGA-NACCACTT
gi|1 : ATATGATACAAAATGTCCTGTCGAAAGAAGTATCAA-CAAAAT-TCTAAATTCATAC-TCACATGTGCGCGTCATTGCGATTGT-TGCGCGAGTA-GCACGTTGCAATGGAATTCATCTTTTT-------CAGTA---GATATTGCATCACTACCATTATGAGATTTCCAATGA-ATATATT-AGTACA---TTC-A-ATAG-------ACAGCT----A--G-ATATA--GAATG----ATTGGG--TTGT--GCCAAA-GAAGCAT-ATTGACAACCACTT
gi|10 : -TGCGTTG-----CACCTTTTTTCACTATCATTAATAGATATTG-ATCACTACCATTGTGAGATTT-CAAGGACACATTTT-GGTATA---TACT--ATAG-------Attt
gi|12 : aacCTACCATTATGAGATTT-TAGTGAAGCA-TTT-GGTACA---TACTATATAG-------AAAGCT----A--CAATATA--AGCTG----ATT-GG--TTGT--GC---A-GAAGTAC-ATg
gi|16 : aATTTT-GGTACA---TACTA--TAA-------AAAGCT----A--GAATATA--AGATG----ATT-GG--T
gi|2 : ATATGATA-GAAAT-TCCCATTGAACGAA--ATCAA-CAAAAATTCTGAAT-CATAC-TCACATGTTCGCGT-AT-GC-ATTGTGCGCGTGAGAAGGCACG-TGCATTGGAATTCACATTTTT-------CGTTA---GATATTG-ATCGCTACCATTATGAGATTT-CAATGATACATATT-GGTACA---T-CTA-ATAG-------AAAGCT----A--GAAAATA--AGATG----ATT-GG--TTGT--GC---G-GAAGCAT-ACTGA-CACCACTT
gi|3 : tCGAGAAAGCATG-TGCATTGGGATTCACCTTTTTT------CATTA---TATATTG-AACGCTATCATTATGAGATTT-CAATGATATATGTT-GGCACA---TATT--ATAG-------AAAGCA----A--CAATATA----GTG----ATT-GG--TTG
gi|4 : CGAGAAGGCACG-TGCATTGCAATTAAACTTTTT-------CATAA---GATATTG-ATCTATATTATTTTGATATTT-CAATGACACCTTTTGGGTACG---TAC----------------AGCA----A--GAATGCA--AGGTG----ATT-GT--TTGT--AT---A-GAAGCAC-ATTGA-TACCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccccgttacaattagtactag
gi|5 : TTGAAAAAA--ATTAAACCAAACCTCCAAAT-CATACCTGAAATGTTTGCGT----GCAA--------ACGAGA------------TT--AAT---CTTTTTT-------CATTA---AAT--TG-ATCACTACCATAATGCGATTT-C-ATGACACA---A-AGAACA---T-----ATAG-------AACGCT----ACCAAATGTA--AAGTGAATTATT-GT--TTG---GC---A-GAAGCAC-ATTGA-ttttttgttaaaagggggttggggaacattcgtaacggccctcgttacaatcaaatct
gi|6 : TATGATATTT-CAATGACACAATTT-GGTAAA---TACTA--TAT-------AAAGCT----A--TAATGTA--AGGTG----ATT-GG--TTGT--GC---A-GAAGCAC-ATTGA-AACCACTTc
gi|7 : GAGATTC-CAGTGAGACAGTTC-GTTACA---TAGTA-A-AG-------AAAGCT----A--GATTGTA--AGATG----AAT-GT--TTGT--GC---A-GAAGCAC-ATTGA-GACCGCCTttaaattagggatgttggggaggggggactccgtaatggtccccgttacaattagta
gi|8 : accactgctggtacgA---AATATCG-ATCACTACCATTATGAGATTT-CAATGACATATTTT-GGTACATTGTATAA-AAAGTATTTTAAAAGTTTCGCA--GAATGTGATAGATG----ACT-GGTTTTGTGGGC---ATGAAGCACTATTGA--ACCtctaaaaggggaggggggggggggcatccgca
blockSeqs : . . . A AT . C ATGCATTGTGC AG . G T TCACTAT ATA . A . C TT G TTG A AAAAAGTATTTTA TCGC CC AT AATT . TT GG . T T C
blockSeqs : . . CC . . GCAA AA . G T T . . G . A TT . . A TATATAG . . . . . . . . . . T
blockSeqs : AG . C T . . . G . T TA . . A TAATAG . . . . . . . . . . A
blockSeqs : . . . . . . . T . T TG . . A TATAG . . . . . . . . . . G
blockSeqs : . . . . . . A . C TT . . A TATAA . . . . . . . . . . .
blockSeqs : . . A . C AT . . A TATAG . . . . . . . . . .
blockSeqs : . C GT . . A TATAT . . . . . . . . . .
blockSeqs : . G TT . . A TAAAG . . . . . .
blockSeqs : . C T . . . ATAG . . . . . .
blockSeqs : . . . . .
blockSeqCons : AG *** N*
originalCons : NATATGATACGAAATGTCCCGTCGAAAGAA--ATCAA-CAAAANCTCTAAAT-CATAC-TCACATGTTCGCGT-AT-GCGATTGT-CGCGCGAGAAGGCACG-TGCATTGGAATTCACCTTTTT-------CATTA---GATATTG-ATCGCTACCATTATGAGATTT-CAATGACACATTTT-GGTACA---TACTA-ATAG-------AAAGCT----A--GAATGTA--AGGTG----ATT-GG--TTGT--GC---A-GAAGCAC-ATTGA-NACCACTT
finalCons : NATATGATACGAAATGTCCCGTCGAAAGAA--ATCAA-CAAAANCTCTAAAT-CATAC-TCACATGTTCGCGT-AT-GCGATTGT-CGCGCGAGAAGGCACG-TGCATTGGAATTCACCTTTTT-------CATTA---GATATTG-ATCGCTACCATTATGAGATTT-CAATGACACATTTT-GGTACA---TACTA-ATAG-------AAAGCT----A--GAATGTA--AGGTG----ATT-GG--TTGT--GC---A-GAAGCAC-ATTGAN-ACCACTT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GCTAAAATGTAGACGATTGGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCCATTACAATTAGTACTAGT
Unaligned ( gi|11 ): CTTGCATTAAAACAAATGACACCCACTTGCTGAAATGGCGGGAATGTTTGGGGAACATCCGTAACGCGTCCCCGTTACAATTAGTACTAGT
Unaligned ( gi|13 ): ATAAAAGAAAATGGCACCTCTTTGTAAATGGGGGACCTTTGTGAACATCTGTAACGATCCTCGTTACA
Unaligned ( gi|14 ): AAAGATGAAGACGGTTTGCAAGAACAACCTTTAACGGTCACCCGTACCATATTACAAGACTAGTT
Unaligned ( gi|15 ): AGGGGTTTGGGGAACATCCGTACTGGTCCTCATTACATATGGAACTAG
Alignments
lowQualScore : 1 1 11 1 11 1 1 33333333333333 2222222 111 11111111111111 11
lowQualScore : 5 5 0 88 3 33 3 3 66666666666666 99 6 6 3 8888888 000 5 2 4 3 44 3 666 2 55555555555555 8888 55 55 0 8888 4 55 66 888 5 5 33
lowQualScore : . . . .. . .. . . .............. .. . . . ....... ... . . . . .. . ... . .............. .... .. .. . .... . .. .. ... . . ..
lowQualScore : 0 0 7 33 3 00 3 3 77777777777777 00 7 7 2 3333333 000 7 7 0 2 55 6 444 3 55555555555555 5555 55 55 5 5555 0 55 99 888 0 0 22
consensus : NATATGATACGAAATGTCCCGTCGAAAGAA--ATCAA-CAAAANCTCTAAAT-CATAC-TCACATGTTCGCGT-AT-GCGATTGT-CGCGCGAGAAGGCACG-TGCATTGGAATTCACCTTTTT-------CATTA---GATATTG-ATCGCTACCATTATGAGATTT-CAATGACACATTTT-GGTACA---TACTA-ATAG-------AAAGCT----A--GAATGTA--AGGTG----ATT-GG--TTGT--GC---A-GAAGCAC-ATTGA-NACCACTT
Reference ( family-520 ) : NATATGATACGAAATGTCCCGTCGAAAGAA--ATCAA-CAAAANCTCTAAAT-CATAC-TCACATGTTCGCGT-AT-GCGATTGT-CGCGCGAGAAGGCACG-TGCATTGGAATTCACCTTTTT-------CATTA---GATATTG-ATCGCTACCATTATGAGATTT-CAATGACACATTTT-GGTACA---TACTA-ATAG-------AAAGCT----A--GAATGTA--AGGTG----ATT-GG--TTGT--GC---A-GAAGCAC-ATTGA-NACCACTT
gi|1 : ATATGATACAAAATGTCCTGTCGAAAGAAGTATCAA-CAAAAT-TCTAAATTCATAC-TCACATGTGCGCGTCATTGCGATTGT-TGCGCGAGTA-GCACGTTGCAATGGAATTCATCTTTTT-------CAGTA---GATATTGCATCACTACCATTATGAGATTTCCAATGA-ATATATT-AGTACA---TTC-A-ATAG-------ACAGCT----A--G-ATATA--GAATG----ATTGGG--TTGT--GCCAAA-GAAGCAT-ATTGACAACCACTT
gi|10 : -TGCGTTG-----CACCTTTTTTCACTATCATTAATAGATATTG-ATCACTACCATTGTGAGATTT-CAAGGACACATTTT-GGTATA---TACT--ATAG-------Attt
gi|12 : aacCTACCATTATGAGATTT-TAGTGAAGCA-TTT-GGTACA---TACTATATAG-------AAAGCT----A--CAATATA--AGCTG----ATT-GG--TTGT--GC---A-GAAGTAC-ATg
gi|16 : aATTTT-GGTACA---TACTA--TAA-------AAAGCT----A--GAATATA--AGATG----ATT-GG--T
gi|2 : ATATGATA-GAAAT-TCCCATTGAACGAA--ATCAA-CAAAAATTCTGAAT-CATAC-TCACATGTTCGCGT-AT-GC-ATTGTGCGCGTGAGAAGGCACG-TGCATTGGAATTCACATTTTT-------CGTTA---GATATTG-ATCGCTACCATTATGAGATTT-CAATGATACATATT-GGTACA---T-CTA-ATAG-------AAAGCT----A--GAAAATA--AGATG----ATT-GG--TTGT--GC---G-GAAGCAT-ACTGA-CACCACTT
gi|3 : tCGAGAAAGCATG-TGCATTGGGATTCACCTTTTTT------CATTA---TATATTG-AACGCTATCATTATGAGATTT-CAATGATATATGTT-GGCACA---TATT--ATAG-------AAAGCA----A--CAATATA----GTG----ATT-GG--TTG
gi|4 : CGAGAAGGCACG-TGCATTGCAATTAAACTTTTT-------CATAA---GATATTG-ATCTATATTATTTTGATATTT-CAATGACACCTTTTGGGTACG---TAC----------------AGCA----A--GAATGCA--AGGTG----ATT-GT--TTGT--AT---A-GAAGCAC-ATTGA-TACCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccccgttacaattagtactag
gi|5 : TTGAAAAAA--ATTAAACCAAACCTCCAAAT-CATACCTGAAATGTTTGCGT----GCAA--------ACGAGA------------TT--AAT---CTTTTTT-------CATTA---AAT--TG-ATCACTACCATAATGCGATTT-C-ATGACACA---A-AGAACA---T-----ATAG-------AACGCT----ACCAAATGTA--AAGTGAATTATT-GT--TTG---GC---A-GAAGCAC-ATTGA-ttttttgttaaaagggggttggggaacattcgtaacggccctcgttacaatcaaatct
gi|6 : TATGATATTT-CAATGACACAATTT-GGTAAA---TACTA--TAT-------AAAGCT----A--TAATGTA--AGGTG----ATT-GG--TTGT--GC---A-GAAGCAC-ATTGA-AACCACTTc
gi|7 : GAGATTC-CAGTGAGACAGTTC-GTTACA---TAGTA-A-AG-------AAAGCT----A--GATTGTA--AGATG----AAT-GT--TTGT--GC---A-GAAGCAC-ATTGA-GACCGCCTttaaattagggatgttggggaggggggactccgtaatggtccccgttacaattagta
gi|8 : accactgctggtacgA---AATATCG-ATCACTACCATTATGAGATTT-CAATGACATATTTT-GGTACATTGTATAA-AAAGTATTTTAAAAGTTTCGCA--GAATGTGATAGATG----ACT-GGTTTTGTGGGC---ATGAAGCACTATTGA--ACCtctaaaaggggaggggggggggggcatccgca
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GCTAAAATGTAGACGATTGGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCCATTACAATTAGTACTAGT
Unaligned ( gi|11 ): CTTGCATTAAAACAAATGACACCCACTTGCTGAAATGGCGGGAATGTTTGGGGAACATCCGTAACGCGTCCCCGTTACAATTAGTACTAGT
Unaligned ( gi|13 ): ATAAAAGAAAATGGCACCTCTTTGTAAATGGGGGACCTTTGTGAACATCTGTAACGATCCTCGTTACA
Unaligned ( gi|14 ): AAAGATGAAGACGGTTTGCAAGAACAACCTTTAACGGTCACCCGTACCATATTACAAGACTAGTT
Unaligned ( gi|15 ): AGGGGTTTGGGGAACATCCGTACTGGTCCTCATTACATATGGAACTAG