lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 999999999999999999999999999 111111111111111 11111 222222 111 111111 1 111 1111111 33333333333 22222222 111 111111111111 111 1111 1 11 11 1111 111 1111 11 33333 11 111 22222 2222222 66666666666666666666 22222 111 11 11 444444444444 11 11 444444444444444 111 55555555555555555 11 1 111 1 1 6666666666666666 11 222 222 22222 111 1 555555555555555555 1 11111 2222222222 11111 1 2222 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 777777777777777777777777777777777777 1 1 1 111 2222 1 4444444444 11 1 1 3333333 111 11 1 2222222 55555555555555555555555555555555555555555 11111 222 2222222 1111 11 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11 11 111 444444444444 1 11 55 1 8888888888888888888888888 11 1 2222222 22222222222 222 555555 11 333333333333 1111 33333333333 11 222222 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111 22222 11 11111 444 1 1 11 4444444 22222 1 5555555 1 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 22222222222 1 22 33 11 1 2 1
lowQualScore : 444444444444444444444444444 888888888888888 44444 77 222222 5 000 5 5 888888 5 5 5 66 5 333 5 5 8888888 5 44444444444 00000000 5 0 000 777777777777 5 5 5 777 7777 3 11 11 8 8 4444 444 4444 11 55555 6 8 99 8 8 444 00000 8 6666666 88 55555555555555555555 8 8 00000 8 8 8 8 8 444 8 11 11 111111111111 11 11 222222222222222 44 444 8 66666666666666666 99 0 666 0 0 6666666666666666 33 444 222 55555 2 777 0 4 222222222222222222 0 8 55555 9999999999 99999 7 3 8888 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 555555555555555555555555555555555555 0 5 2 0 3 777 1111 5 6 6666666666 33 0 0 9999999 111 22 0 2222222 55 8 8 8 55555555555555555555555555555555555555555 1 66666 555 8 6666666 8 1111 8 44 1 6 0 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 33 33 777 222222222222 5 00 55 0 5555555555555555555555555 66 0 1111111 33333333333 8 5 222 333333 11 8 8 000000000000 7777 11111111111 8 11 333333 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 8 8 8 8 8 8 8 8 8 3333 33333 00 77777 777 0 0 33 5555555 6 77777 1 6666666 6 5 6 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 3 88888888888 0 33 66 22 0 3 7
lowQualScore : ........................... ............... ..... .. ...... . ... . . ...... . . . .. . ... . . ....... . ........... ........ . . ... ............ . . . ... .... . .. .. . . .... ... .... .. ..... . . .. . . ... ..... . ....... .. .................... . . ..... . . . . . ... . .. .. ............ .. .. ............... .. ... . ................. .. . ... . . ................ .. ... ... ..... . ... . . .................. . . ..... .......... ..... . . .... .................................................................................................... .................................... . . . . . ... .... . . .......... .. . . ....... ... .. . ....... .. . . . ......................................... . ..... ... . ....... . .... . .. . . . ............................................................................................... .. .. ... ............ . .. .. . ......................... .. . ....... ........... . . ... ...... .. . . ............ .... ........... . .. ...... ....................................................................................................... . . . . . . . . . .... ..... .. ..... ... . . .. ....... . ..... . ....... . . . ................................................................................................................................................................................................................................................................................................................................................................................................................................................................ . ........... . .. .. .. . . .
lowQualScore : 666666666666666666666666666 999999999999999 33333 99 777777 7 000 7 7 999999 7 0 0 99 0 111 7 7 6666666 7 33333333333 77777777 7 1 666 777777777777 7 7 7 222 0000 2 00 00 0 0 8888 000 8888 00 22222 0 0 00 0 0 444 00000 0 0000000 88 44444444444444444444 0 6 88888 0 0 0 0 0 888 0 00 00 000000000000 00 00 888888888888888 00 000 0 44444444444444444 00 0 000 0 0 0000000000000000 88 888 555 00000 5 555 0 0 888888888888888888 0 2 00000 7777777777 00000 3 3 3333 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 888888888888888888888888888888888888 0 0 5 0 5 555 2222 0 5 8888888888 88 0 0 0000000 555 55 0 2222222 55 0 0 0 00000000000000000000000000000000000000000 4 00000 000 0 0000000 0 8888 0 00 0 0 8 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 88 88 555 000000000000 5 00 00 0 5555555555555555555555555 55 0 5555555 00000000000 0 6 000 222222 00 0 0 444444444444 0000 44444444444 0 00 000000 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 0 0 0 0 0 0 0 0 0000 00000 22 22222 555 0 0 88 7777777 0 00000 5 8888888 0 3 7 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 3 55555555555 0 88 22 55 0 0 0
consensus : TTAAGGATGTTCTCTGGTGG-ATGA--T---------TT------TTTTC-TT-G-AA-T--T--AA-----ACTT--TTT-----AA-A---T-AACCCATC-TT--AAA-CTCATT-CAT-CT-TGACCA--GAAAGGCAAATTCAAAC-A-CAA-------GA-AAAG-------G---TAT--------GT-TAGTG-C-GG--ACT-T-----T-AAA-GAGTT-ACAGCCCCT--CAAAGTTA----CCCCTTTG--CT--GAA-AG-TT---AC---TTTTT---TCTTTT-GAAA---A-TCA-CCAT--T-TTCCA-CAAGAAAA-CACAATA-----T-AAAACAAATA-------TTCA-TGACAG--N-------AAT--AAT-TTCA-TTATCTTTTATTT----C-A-TG-AA-AATTAA-TCA--T-AA--TTTATAA--TT-------TTT--AT--AACT--TTTA--CAT-AA-TT---TTTTTTCAAA---AATT-CTA-G--AA-------T--AATAAC--AGATT-ATCT-AG-CAT-TA-TTG-GG---------GGAA--AANA-TGAC-N-CAAATT-----TTAAGT---CA-ANTTTT--GTC---------AA-AAAA-TTCAA--T-CTA----GC--A-GAGTTCC-T-GAATT-AAAC----TTTC--GT-----G--AA-A--TTGCCA---AC-GCAGA-TT-------CGAAA-----NA---TATT--TT--T---GCTCATTTT---------------G-AATGAAAAAAAA-------GTT-GG-GG----G-------TAG-T-TGTGCA-TTGGGAAC-AAAGNTT---TG----AACCCATTTT-G-TG----TCC--CA-CCC-CCTTCTC-----ATTT-TTG-TCAT-AAATT----TCAANNTC-AATT-AC-AATATTATGA--T-TTG--T-TAT----AA----A-----TA-T--ATTTTC--T--TCAAT---TCATAT-TTA-------CAA-ATTTTAT-G-TATTTA-TT-TAATCATATAACCAAT--ACTG-T----C-T--AAAAAGG--T-----AT-AAATAAT-TTG--TA--TAC--AAACAA-----A-ANT-AAT--------TT-NATT--TATC--ACT---GAAG-AAATAC-ATAGTGGAAAACANATGCCACTAAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAATTTT-GTTTC-GAATAGA----A----AAA-A--AGTAC-TT-GAG----TTGTCCTT----AGAAA--CCAATT-TTTAAA--CAGT------CAA--C-TTCCAT-GCA---CC-CACT--TGGA----AGA-GATGTG-T--ACTT-C--CTG------GTAA-TGATT-----TC-CC-G--A--A-T--GAT--GACA-CC----A-TGAA-TCC-----ATG--AT--TT--ATAA-CAA--T------TCCCG----TG--GTT-AC-AAA-AT-GGA-TG-T-AT-CTA-CAA-A--GCAGAA--CCGATAAG-GA-A--CAAATTA--TTGA-TCTAGTAG-CGC--AAAGAAATATA------AAAATCAACGAAATGAATCTGTTNTCGTTTTTTTAG-CACGA-CGCCGCGCCGT---------AT-TTCT--CT-------------AA------------CAT---------T-------T------------TTA--CCTCGG-GA---TTCGT-TTTGATGA-ATAAA---TTC----------ATTGTTTACG-----TTG--GTGA-TTTTT----TAAAANCTCTGATTACTAGTNGAATTACACNTACCNTATATTGNATTCAAAAA---TG--ATGA-TTAAAAA----ATAA-TGC-AT--TGGACA-TCAGGGACTATAGAAT------CC---ATTAA---CCG----G--GCTTTC-CT-CGC----G----CA--GGAT-CAG-ATC---TTG------GGT-AT----C-G-ATAT-TT-AG-TTTG--TAGA-T---TTTTTTAAAAATAAAAC-TAC-TT---AAT-GG--CA-C---C-----ACAA-ATTCAC--T-C-AG-AAC-TAC-TATCAACA-GCCTT-GGG-TTCAGCCACTATGTATGC
Reference ( gi|3 ) : TTAAGGATGTTCTCTGGT---------T---------TT------TTTTC-TT-G-AA-T--T--AA-----ACTT--TTT-----GA-A---T-AACCCATT-TT--AAA-CTCATT-CAT-CT-TGACCA--GAACGGCAAATTCAAAC-A-CAA-------GA-AAAA-------G---TAT--------GT-TAGTG-C-GG--ACC-T-----T-AAA-GAGTT-ACAGCCCCT--GAAAGTTA----CCCCTTTG--CT--GAA-AG-TT---AC---TTTTT---TCTTTT-AAAA---C-TTA-CCAT--T-TTCCA-CAAGAAAA-CACAATA-----T-AAAACAAATA-------TTCA-TGACA---T-------AAT--AAT-TTCA-TTATCTTTTATTT----C-A-TG-AA-AATTAA-TCA--T-AA--TTTATAA--TT-------TT---AT--AACT--TTT---CAT-AA-TT---TTTTTTCAAA---AATT-CTA-G--A--------T--AATAAC--AGATT-ATAT-AG-CAT-TA-T---GG---------GGAA--AATA-TGAC-C-CAAATT-----TTAAGT---CA-AATTT---GTC---------AA-AAAA-TCCAA--T-CTA----GC--AAGAGTTTC-T-GAATT-AAAC----TTTT--GT-----G--AA-A--TTGCTA---CT-GTAGA-TT-------TGAAA----TCA---TATT--TT--T---GCTCATTT----------------G-AATGAAAAAAA--------GTT-GG-GG----G-------TAG---TGTGCA-TTGGGAAC-AAAGTTT---TG----AACCCATTTT---TG----TCC--CA-CCC-CCTTC-C-----ATCT-TTG-TCAT-AAATT----TC-ACATC-AATT-AC-AATATGATGA--T-TTG--T-TAT----AA----A-----T--T--ATTTCC--T--TCAAT---TCATAT-TTA-------CAA-ATTTTAT-G-TATTTA-TC-TAATTATATAACCAATCAACTG-T----C-T--AAAAAGG--T-----AT-AAATAAT-TTG--TA--TAT--GAACAA-----A-ATT-AAT--------TC-CATT--TATC--ACT---GAA--AATTAC-GTGGTGGAAAACAAGTG--ACTAAATTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAATTTT-GTTTT-GAATAGA----A----AAACA--AGTAC-TT-GAG----TTATCCTT----AAAAA--CCAATT-TTTAA---CAGT-----TCAA--C-TTCCAT-GCA---CC-CA-T--TGGA----AGA-G-TGTG-T--ACTT-C--CTG------GTA--TGGTT-----TT-C--G--A--A-A--GAT--G-CA-CC----A-TGA--TCC-----ATG--AT--TA--ATA--CA---T------TCCC-----TG--GTT-AC-AAA-AT-GGA-TG-T-AT-CTA-CAA-A--GCACAA--CCGATAAG-GA-A--CAAATT---TTGA-TCTAGTAG-CGC--AAAGAAATATA------AAAATCAACAAAGTGA-TCC-TTATCGTTTT---AG-CATGAACGCCGCGCCGC---------ATATTCT--CT-------------AA------------CAT---------T-------T------------TTA--CCTCGG-GA---TTCAT-TTTGATGA-ATAAA---TTC----------ATTGTTTACA-----TTG--GTGA-TTTTT----TAAAAACTCTGA-TAC---TTG--------ATACCCT-T-TT-TATTC-AAAA---TG--ATGAGTTAAAAA----ATAATTGC-AC--TGGACA-TCAGGGACT----AAT------T----ATT-----CCGA-AAG--GCTTTC-CT-CGC----G----CA--GGAT-CAG-ATCAATTTG------GGG-AT----C-G-ATAT-TT-AG-TTTG--TAGATT---TTTTTTAAATATAAAA--TACTTT---AAT-GG--CACC--TT-----ACAA-ATTCAC--T-C-AG-TAC-TA--TATCAACAGGCCTT-GGG-TTCAGCCACTACGTTTGC
gi|2 : TTAAGGATGTTCTCTGGT---------TGAGATGAAATT------TTTTC-AT-G-AA-T--TTTAA-----ACTT--TTTT----AA-A---T-AACCCATC-TT--AA--CTCATT-CAT-CTATGACCA--GAAAGGCCAATTCAAAC-A-CAA-------GA-AAAA-------GG--TAT--------GT-TAGTG-C-GG--ACT-T-----T-AAA-GAGTT-ACAGCCCCT--CAAAGTTA----CCC-TTTG--CT--GAA-AG-T----AC---TTTTT---TCTTTTTAAAA---A-TCA-CCATC-T-TTCCA-CAAGAA---CACAATA-----T-AAAACAAATA-------TTCA-TGACA---G-------AA---AAT-CTCA-TTATCTT--ATT-----C-A-TG-AA-AATTAA-TCA--TGAA--TTTATAA--TT-------TTTT-ATTAAACT--TTTA--CATTAA-TT---TTTT--CAAA---AATT-CTA-A--AA-------T--AATAAC--AGATT-ATCT-AG-CAT-TA-TTG-GG---------GGAACGAAAA-CGACACACAAATTACTCGCTAA------A-ATTTT---GTCCACGCAAAAAA-AAAA-TAAAACAT-ATA----GC--A-GAGTTCC-TTGAATT-AAAC----TTTT--TTTGATCG--AACACTTTGCCAAAGCC-ACAGA-TTACCATCATAAAA-----CA---TATC--TTCTT---GCTCATTTT---------------G-AATGAAAAAAAAAAACACAGTT-GA-GGCCAAG-------CAGGTATGTGCA-TTGG-AAC-AAAGATT---TG----AACC-ATTTG---TGA---TCC--CA-CCC-CCCTC-TCTCCAATCT-TTG-TCATAAAATTTATATCAACATC-AATTAAC-AATAATATGA--TGCTG--TCCATACTAAA----A-----TGAT--ATTTCTCAC--TCAATCA-TCATATAATA-------CAA-ATTTAA----TATTTA-TTATAATCATATAACC-AT--ACTGAT----C-----AAAAGG--TAAAAAAT-AAA-AATATTGAATACTTAC--AAACAA-----ATAAT-AAT--------TCAAATTAATATC--ACT---GAAGGAA-TACAATAGTGG-AAACAAAT
gi|4 : TTAAGGATGTTCTTTGGTGAGATGAAAT---------TT------TTTCA-TT-G-AA-T--T--AA-----ACTTCCTTT-----GA-A---TTAACCCATC-TCTGGAA-CTCATT-CATTCT-TGACCA--GAAAGGCAATTCCAAACCATCAA-------GA-ATAA-------GAGGTAT--------GTGTAGTG-C-GGGGACTGT-----T-AAAAGAGTTGACAGTCCCTTCAAGGGTTA----CCC-TTTG--CCTGGAATAGCTT---AC---TTTTT----CTTTG-GATA---TATCAGCCATATTATTCCA-CAAGAAAATCA-AATA-----TCAAAACAAATACCACCCATTCA-TGACAG--T-------AAT--AATCTTCAATTATCTAGTATCTTCCTC-ACTG-AATAATTAA-TC---T-AACTTTTATAA--TTATGATATTT---AT--AGCTGCTTTA--CAT-TA-TTGACTTTTTCCAAA---AAATACGACA--A--------T--AATAACTCAGATTTATCT-AGGCAT-TA-TTGTGG---------GGAA--AACAATGAC-A-CAAATT-----TTAAGTTGTCA-AATTTT--GGC---------AA-AAAAGTTCAA--T-CTA----GC--A-GAGTTCCGT-GA-TT-AAAC----TTTTTTGT-----GGAAA-A--TTGATA---ATCGCAGAATT-------TGAAT----GAA---T-TT--TT--T---GCTCATT-----------------G-AATGAAAAAA---------GTT-AG-GG----A-------TAG---CGTGCA-TT-GGAACAAAAGGTT---TG----AA-CCATTTT---TGTGTCTCC--CA-CCC-CTTTCTC-----ATTT-TT--TCAT-AAATT----TC-AACTC-AAAT-AC-AATAT-ATGA--T-TTG--TATAT----AA----A-----TA-T--ATTTTC--T--TCAATTTATCATAT-TTA-------CAATTTTTTAT-GATATTTA-TT-TAATCATATA---AAT--ACTG-T----CTT--AAAAAGGTCT-----ATCAAAT-AT-TTG--TA--TATACAAACAA-----T-AAT-AAT--------T--AATT--TATTAAACT---GAAG-AAATAC---AGTGAAAttgcacaaacttaacattgtcccaatttcatgcccctgtgacattgacctttgaactttctgacatcccataaatattaacaagtgacaatgtcccttctctagtgcgtatcgatatgtctccaaatttttgtttccgaatagataacaaaaaaagtaccttgagtgtccttcgaacacaatcctttaacagtaataaccaacattccatcgcaaaacacggaagagatacttcaactgaccaaggtaatgatttcacggaaatgatcggcaaccaatgaatccatgatctttataaccattcctgtgccgttacaaacatggaatgtgatccaacaagacagaaaaccgataagagaaaccaaattattgatctagtaggcgcaaagaaatatacatgttaaaatcaacgaaatgatctgttgtcatttgcacgaacgcccaccgcccaaccaatatattctctaaacctgacgaccaatatcaaactctattttacctcggcgaaaccttacgtttgatgaataaaactttcatgattatacccgcttgtaggaacttttataccaaaacctctgatattagaattacacataccatatattgattcaaaaacctgatgattacaaataccataaatgcaattgaacatcaaggactcaatagaaaacatcaactaccgggcttcctgcgctcaggcaatggatacagaatccttgagaagaggtatcagacaatatttcagtttgtagatctttagaaatctaaaacttacgttccaaatagaacaccaatcctacaacaaattcacaatcaagaactacccatcaacagcttgggtttcagcctaaccggccataa
gi|11 : TTAAGGATGTTCTCTGGTGGTA-----T---------TA------TTTTT-TT-A-AA-G--T--AATAAAAAATA--AT-------A-A---T-AACCCATT-TT--AA--CTTATT-CAT-CT-TGATCA--GAAAGACAA-TTTAAAC-A-CAC-------GA-ATAA-------G---TAT--------AT-CAGTG-T-GGT-ACA-TGTAGTC-AAA-GTGTT-ACAGCTCCT--GAAAGTTA----GCCCTTTG--CT--GAA-AG-TT---ATATATATTT---TCTTT
gi|13 : gTTAAGGATGTTCTCTGCT---------T---------TTATGAAGTTTTT-TC-A-AAATAAT--AA-----ACTT--TTT-----AA-A---T-AACCCATT-AT---AA-CTCATT-CAT-CT-TCACCA--GGAAGGC-AATTTAAAC-A-CAA-------GAGAAGG-------G---TGC--------AT-TGGTG-T-CG--A-C-T-----T-CCA-GAGTT-ACAGGCCCT--
gi|5 : AAGGATGTTCTCTGGTGGTGTGAA-T---------TT------TTTTC-AAAG-AA-A--T--AA-----ACTC--TTT-----GA-A---T-AACGCATT-TT--AA--CTCATT-CAT-CT-TGACCA--GAAAGGCAA-TTTAAAA-A-CAA--------A-AAAG-------G---TAT--------GT-CAGTA-T-GA--ACT-T-----T-AAA-GAGAT-ACAGCTCCT--CAAAGTTT----CCCCTTTG--CT--GAA-AG-TT---AC---TTTTT---TTTTTC-GAAA---A-TCA-CCAT--T-TTCTA-CAA-AAAA-CACAATA-----T-AAAACAAATA-------TT-A-TGACA---A-------AAT--AATATTCA-TTATCATCTATTT----C-A-TG-AA-AATTAA-TCA--T-AA--CGTATAA--TT-------TTTACAT--AAAT--TTT---
gi|16 : cAAGGATGTTCTCTGGTGAGATGA--C---------TT------TTTTCATT-C-GA-T--T--AA-----ACTT--TTT-----AA-AAAAT-AACCCATC-TT--AAAACTCATT-CAT-CT-TGACCA--GA--GGC-AATTCAAAgtcaaga
gi|1 : ta---------T---------CT------CTTTCATT-GGAA-T--TTAAA-----ACTT--TTTTTTTAAACA---T-AACCCATTCTT--GAA-CTCATTTCAT-CT-TGACCAAAGAAAGGTTAATTCCAAA-A-CAACTGAAAGGA-AAAA-------GGGGTAT--------GT-T-GTGACAGG--ACT-T-----T-AAA-GAGTT-ACAGCCCAT--CAAGTTTGATATCCCTTTTGCTCT--GAA-AG-TTAAAAC---TTTTTTTGTCGTTT-GAAAGGGA-TCA-CCAT--T-TTCCACCAAGTAAA-CACAATAGAAATT-AAAACAAATA-------TTCATTGACAGCCTTTTAGAGAATTAAAT-CTCA-TTATCTTTTATTT----CAA-TGAAA-AATTAATTCGATT-AA--TTTATAATTTT-------TT---AT--AACT--TTTA--CAT-AATTT---TTTTTTCAAATTTATTT-CTA-GAAA--------TAGAATAACG-AGATT-ATCTCAG-CATATA-TTA-GGAGCTTGGACGAAA--AAAA-TGAC-C-AAATTT-----TTATGT---CA-AATTTTTGATC---------AAGAAAA-TTCAA--TATTATTAGGCGGAAGAGTCCT-T-GAATTAAAACTTGGTTTC--GT-----G--GA-A--ATGCCA---ATGGCAGA-TT-------CGAAACAACTTAGGTTACTACTT--TGTGGCTCATTTTTGATTTAGAGGGTGAA-AAGGAAAAAAA--------GTTCGGTGG----GGTCATATTAGTT-TGTGCATTTGGGAAC-AAAGTTTTTATGGGATAACCTATTTTTG-TG----TCCCGCA-CCCGCCTTCTC-----ATTTCTTGATCAT-AAATT----TCAACATCGGATT-ACAAATAT-ATGACTT-TTGTAT-TAA----AATGGTA-----T--T--CTTTCC--TGGTGAAT---TTCTAA-TTATTTCAGGCAA-ATTTTATGG-TATTTATTT-TAATCATATAACTACTTACATG-TTCTCT-T--AAAAAGG--------AT-AAATAA--TTG--TG--TA----AACAATACTCA-ATTCAATGATATAAATT-CATT--TATC--ACTTTCGAG--AA-TAC-ATGTTGAAA
gi|18 : ttaaggtgtttctgttggtgagattggacctccAT-CT-TGATCA--GAAAGACAA-TTTAAAC-A-CAA-------GT-AAAGGATACATG---TATATATATAAGT-AAGTG-T-GG--ACT-T-----TAAAA-GAGTT-ACCGCCCCT--CAAAGctaaaatgccacttaaagttttaacttattgtccaactcttccatgccactgtgacattgacctttgatcttttactgatctctcaaaaatatcacaacaagcgatgttcccttctttagtgtcaatatcccttatgtccaaatttttgtatgatagaatatcaaacggtattatttagagttgcgctttattagacaccaatttttaaactcagtcaaaccttccatgcaccaccttagagtgaagagatgtgatactttcctggtatgattagatttccggtaatgatgcaccggggatgaatccgggtaatgttattatcataacaattcccgttcgtggttgacaaaattggatgatgttctacaaaaagcagaccggataaagacacaaattatgtcgatctggtagcgtcaaaagaaatataaaaatcaacaaaatgaatcttttttgtttttttagacacgacaccgcgccatattttctttctaaagaatgccgatacattaaactattttagccttctggattcgtttttgctatgaactccataatggcaattatttacgttggtgatttttttaaaaactctgattactagttattacccttttgtattcaaaaatgttatgattaagaaataatgcacattggacattcagggactatagaatctaattaccgggtcttcgctgcgcggctacaggatcagattgggtatcgcatatttagttttgtagtttagattttttaaaaataaaactacttaatagacaactacaatattcacagaacttattatcaacagccttgttcagacactatg
gi|14 : TT-GAAA---A-TCA-CCAT--T-TTCCA-CAAGAAA--CACAATG-----T-AAACCAAATA-------ATC---------------------------TCCA-TTATCTTTTCGTC----C-A-TG-AA-AATCAG-TCA--T-AA--TTTATAA--TT-------TTG--AT--AACA--TTTACCCAA-AA-------ATGTTCAAC---AATT-CT-----T--------T--AATAAT--A
gi|15 : c---AATT-CTA-G--AAATACACGT--AATAAC--TGATT-ATCT-AG-CAT-TATT---GG---------AGAA--AAC--TGGC-A-CAAATG-----TTAAGT---CATATTTT---GTC----------A-AAAT-TTCAA--T-CTA----GC--t
gi|10 : tttgtcCTCATTT----------------TTAATGAAAAAAAAT------GTC-AG-GG----G-------TAG---TGTGCG-TT-GGAAC-AAAGTTT---TG----AA-CCATTTTGAGTG-----CC--CATCCC-CTTTT-C-----AT-T-TTG-TCAT-AAATT----TC-AACTC-AATA-AC-AATATT-CAA--T-TTG--T-TAT----AA----A-----A--TGCATATTC--T--TCAAT---TCATAT-TTA-------CAA-ATCATAT-G-TATTTA-TT-CCATCGTATAA
gi|7 : tcTC-AATT-AC-AATATGAT------TTG--T-TAT----AA----AATGCATA-T--ATATTC--T--TCAAT---TCATAT-TTA-------AAA-ATTTTAT-G-TATTTA-TT-TTATCACA-AA--AAT--ACTG-T----C-TAAAAAAAAG--T-----ATAAAATA---TTG--TA--CAC--AAAC-------A-AT---AT--------TT-CATT--TATC--ACT---GAA--GAATAC-AT-GTGG-AAACATATGCCACTAAATTAAgac
gi|2 : CCAAATTTTTGTTTCCGAATAGATAACA----AAAAA--AGTACCTT-GAG----T-GTCCTT----CGAAC--ACAATCCTTTAA---CAGTAATAACCAA--CATTCCATCGCAAAACA-C------GGA----AGA-G----A-T--ACTT-CAACTGACCAAGGTAA-TGATT-----TCAC--G--G--A-AATGATCGG-CAACC----AATGAA-TCC-----ATG--ATCTTT--ATAACCA---T------TCCTG----TGCCGTT-AC-AAACAT-GGAATG-TGAT-CCAACAA-G--ACAGAAAACCGATAAGAGA-AACCAAATTA--TTGA-TCTAGTAGGCGC--AAAGAAATATACATGTTAAAATCAACGAAATGA-TCTGTTGTCATTT-----G-CACGAACGCC-CACCGCCCAACCAATATATTCT--CTAAACCTGACGACCAA------------TATCAAACTCTAT-------T------------TTA--CCTCGGCGAAACCTTACGTTTGATGA-ATAAAACTTTC----------A-TGATTATACCCGCTTGTAGGAA-CTTTTATACCAAAACCTCTGA-TAT---TAGAATTACACATACCATATATT-GATTC-AAAAACCTG--ATGA-TTACAAATACCATAAATGCAAT--TGAACA-TCAAGGACTC---AATAGAAAAC----ATCAACTACCG----G--GCTTCC-TG-CGCTCAGG----CAATGGATACAGAATC--CTTGAGAAGAGGT-ATCAGAC-A-ATAT-TTCAG-TTTG--TAGA-T---CTTTAGAAATCTAAAACTTACGTTCCAAAT-AGAACACCAATCCTACAACAA-ATTCACAAT-CAAG-AAC-TACCCATCAACAG--CTT-GGGTTTCAGCCcattgtccaattccatgcactgtgacattgacctttgaccttctgactccaaaattcactggtattaagccaatgcc
gi|1 : ttaaggatgttctctggttgagatgaaattttttcatgaattttaaacttttttaaataacccatcttaactcattcatctatgaccagaaaggccaattcaaacacaagaaaaaggtatgttagtgcggactttaaagagttacagcccctcaaagttaccctttgctgaaagtacttttttctttttaaaaatcaccatctttccacaagaacacaatataaaacaaatattcatgacagaaaatctcattatcttattcatgaaaattaatcatgaatttataattttttattaaacttttacattaattttttcaaaaattctaaaataataacagattatctagcattattgggggaacgaaaacgacacacaaattactcgctaaaattttgtccacgcaaaaaaaaaataaaacatatagcagagttccttgaattaaactttttttgatcgaacactttgccaaagccacagattaccatcataaaacatatcttcttgctcattttgaatgaaaaaaaaaaacacagttgaggccaagcaggtatgtgcattggaacaaagatttgaaccatttgtgatcccacccccctctctccaatctttgtcataaaatttatatcaacatcaattaacaataatatgatgctgtccatactaaaatgatatttctcactcaatcatcatataatacaaatttaatatttattataatcatataaccatactgatcaaaaggtaaaaaataaaaatattgaatacttacaaacaaataataattcaaattaatatcactgaaggaatacaatagtggaaacaaatttgcacaaacttaacattgtcccaatttcatgcccctgtgacattgacctttgaactttctgacatcccataaatattaacaagtgacaatgtcccttctctagtgcgtatcgatatgtctCCAAATTTT-TGTAT-GA-TAGA----ATATCAAACGGTATTAT-TTAGAG----TTGCGCTTTATTAGACA--CCAATT-TTTAAACTCAGT------CAAACC-TTCCAT-GCA---CCACC-T--TAGAGTGAAGA-GATGTGAT--ACTTTC--CTG------GTA--TGATTAGATTTC-C--GGTA--A-T--GAT--G-CA-CCGGGGA-TGAA-TCCGGGTAATGTTAT--TATCATAA-CAA--T------TCCCGTTCGTG--GTTGAC-AAA-ATTGGA-TGAT-GTTCTA-CAA-AAAGCAGAC--CGGATAAA-GACA--CAAATTATGTCGA-TCTGGTAG-CGTCAAAAGAAATATA------AAAATCAACAAAATGAATCT-TTTTTGTTTTTTTAGACACGA-CACCGCGCCAT---------ATTTTCTTTCT-------------AAAGAATGCCGATACAT---------TAAACTATT------------TTAGCCTTCTG-GA---TTCGT-TTT--TGCTATGAA---CTCCATAATGGCAATTATTTACG-----TTG--GTGATTTTTT----TAAAAACTCTGATTACTAGTTA--------TTACCCT-T-TTGTATTCAAAAA---TGTTATGA-TTAAGAA----ATAA-TGC-ACATTGGACATTCAGGGACTATAGAAT------CTA--ATTA----CCG----G--GTCTTCGCTGCGC----GGCTACA--GGAT-CAG-A-----TTG------GGT-AT----C-GCATAT-TT-AGTTTTG--TAGTTTAGATTTTTTAAAAATAAAAC-TAC-TT---AATAGA--CAAC---T-----ACAATATTCA-----C-AG-AACTTAT-TATCAACA-GCCTT---G-TTCAGACACTATGtaaccggccataa
gi|8 : ttaaggtgtttctgttggtgagattggacctcctctctttcattggaatttaaaactttttttttaaacataacccattcttgaactcatttcatcttgaccaaagaaaggttaattccaaaacaactgaaaggaaaaaggggtatgttgtgacaggactttaaagagttacagcccatcaagtttgatatcccttttgctctgaaagttaaaactttttttgtcgtttgaaagggatcaccattttccaccaagtaaacacaatagaaattaaaacaaatattcattgacagccttttagagaattaaatctcattatcttttatttcaatgaaaaattaattcgattaatttataattttttataacttttacataatttttttttcaaatttatttctagaaatagaataacgagattatctcagcatatattaggagcttggacgaaaaaaatgaccaaatttttatgtcaaatttttgatcaagaaaattcaatattattaggcggaagagtccttgaattaaaacttggtttcgtggaaatgccaatggcagattcgaaacaacttaggttactactttgtggctcatttttgatttagagggtgaaaaggaaaaaaagttcggtggggtcatattagtttgtgcatttgggaacaaagtttttatgggataacctatttttgtgtcccgcacccgccttctcatttcttgatcataaatttcaacatcggattacaaatatatgacttttgtattaaaatggtattctttcctggtgaatttctaattatttcaggcaaattttatggtatttattttaatcatataactacttacatgttctcttaaaaaggataaataattgtgtaaacaatactcaattcaatgatataaattcatttatcactttcgagaatacatgttgaaactaaaatgccacttaaagttttaacttattgtccaactcttccatgccactgtgacattgacctttgatcttttactgatctctcaaaaatatcacaacaagcgatgttcccttctttagtgtcaatatcccttatgtCCAAATTTG-GTTT--------------------------GTAC-TT-GAG----TTATCATT----AGAAA--CCAATT-TT-AA---CAGT------CAA--C-TTCCAT-GCA---CC-CACT--TGGA----AGATA-TGTG-T--ACTT-C--CTG------GTA--TGATT-----TC-CC-G--A--A-T--GAT--GACA-CC----A-TGAA-TCC-----ATA--AT--TT--ATAA-CA---T------TCCC-----TGTGGTT-AC-AAA-AT-GGA-TG-T-AT-CTA-CAA-A--GCAGAA--CCGATAAG-AA-A--CAAATCA--TTGA-TCTAGTAG-CGC--AAAGAAACAT-------AAAATCAAC
gi|6 : tcttatgtAATTTT-GTTT--GAATAGA----A----TAA-A--AGTA--TT-GAGGGGGCTGTCCTT----AAGAAACCCAATT-TTGAAA--CAGT------CAA--C-TTCTAT-GCA---CC-CACT--TGGA----AGA-GATGTG-C--ACTT-C--CTG------GTAAATGATT-----TT-CCGG--A--ATG--GAT--GGCA-CC----A-TGAATCCC-----ATG--CT--TC--TTA--GAATTT------TCTG-----TG--GTT-ACCAAA-AT-GGA-TG-T-AT-CTA-CAACA--GCG-AA--CCGATAAC-AA-A---AAATTA--ATGAGTCTAGTAG-CGC--AAAGAA
gi|12 : tattctattttaatctccT-TTTAA---CAGC------CAA--C-TTTCAT-GCG---AC-CA-TAATG-A----AGA---TATA-TCCACTT-C--CTG------GTA--T-ATA-----TT-C--T--GTTA-T--GAT--GACA-CT----A-TGA--CTC-----AT------------CG--CA---TTTTTTGTCTG-----TG--ATT-AC-AAA-TT-AAA-TG-T-AG-GTA-CAA-A--AC
gi|17 : ag-CACGACCGCCGCGCCAT---------AT-TTCT--CT-------------AA-------------AT---------T-------TGATAGATCTATTTTA--CCCCGG-GA---TTCGT-TTTGATGA-CTAAA---TTC----------ATTGTTTACG-----TTG--GTGA-TTTTT----Tgagcagaaacgggaaacag
gi|9 : AAA---TG--ATGATTAAAAAA----ATAAT-GC-AT--TGGACA-TCAGGGACTATAGAAT------TCTAAATTTAG--CCGAGAAGAAGCTTTC-CT--GC----G----CT--GGAT---G-ATCAGATTG------GGGTAT----CAG-ATATGTT-AG-TTTGGTTAGA-----TTTTTTAAAAATAAAA--TACTTA---AA-------------------ACAA-AATCAC--TCC-AGACAC-TA--TATCAACA-TCTTT-GGG-TTCAGC
gi|20 : TTCAC--T-C-AG-AAC-TA--TATCAACA-GCCTTGGGG-TTCAGCCATTA-GTATGCacat
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|19 ): TAATGACCTTTTAAACCTAGGAATGACATTTACAGTGCTTATATACACAGGCACTTGACGTTTTAAATATATTT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 5555555555555555555 222222 11111 11111 11111 11 1 1111111 111 2222222222222 11 111111 1 11111 11 1111111 111 111 11 11111 2222222 4444444444444444 1 1111 1 111 111111 1111 111 333333 111 2222222222 11 111 333333333 11 11 22222222 11 222222222 111 1111 222 2 1 3333 111 222222222222 33333 1 6666666666666666666666666666 11 111 333333333 222222 3333333333 44444444444444444444 1 111 1111 1111 11111 1111 1111 11 222 1 2222 33333333 11111 222 2222222 22222222 11 2222 33333333 1 22 11 11 44444444444 11 11 111 111 1111 11 1111111 1 1 111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1 444444444444444444444444 111111 22222 222222 11 11111111 1111 111111 2222 22 1 2222 111 11111 11111 11111 1111 2222222 11 11 11 3333333 2 2 1111 1 2 1 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 1 2222 1 1 111 4444444444 1 11 11 33333 7777777777777777777777777777 1 11 11 1 222222 1 1 1111 1 111 666666666666666666666666 11111 4444444444444444 1 5555555555555555 22222222 1 1 1 11 4444444 11 22 8888888888888888888888888888 1 1111 33 1
lowQualScore : 5 5 0000000000000000000 333333 44444 66 77777 00000 5 5 66 5 44 5 4 4 66 7 0 5 5 6666666 5 888 333 7777777777777 66 5 888 11 333333 0 5 5 5 66666 1 88 6 6 6666666 111 6 888 6 55 6 6 3 6 66666 6 1111111 6 7777777777777777 3 6 3 3 4444 3 6 6 6 000 6 99 6 999999 0000 99 99 0 444 8 333333 111 6 77 1111111111 99 8 8 8 8 777 222222222 11 999 11 8 8 0 11111111 11 11 999999999 8 8 444 8 7777 222 0 3 0 1111 555 999999999999 55555 0 1111111111111111111111111111 33 777 0 0 222222222 000000 0000000000 8 8 99999999999999999999 8 0 8 1 444 7777 3333 8 8 22222 8 0 7777 8 888 8 7777 0 77 6 6 111 99 6 3 3333 11111111 6 6 66666 000 6 1111111 6 777 6 6 99999999 11 8 7777 11111111 8 777 6 8 22 11 8 11 44444444444 0 6 99 11 11 444 222 4444 88 4444444 5 0 777 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 6 222222222222222222222222 666666 8 00000 000000 8 00 99 99999999 99 6 6 6 44 4444 6 6 99 999999 1111 99 5 6 22 6 6 2 6 0000 111 6 6 66666 77777 999 44444 0 4444 99 6 6 6 6 6 6 6 6 6 3333333 99 8 8 11 0 11 8 8 11 2222222 0 3 3 1 2222 0 0 0 2 4444444444444444444444444444444444444444444444444444444444444444444444444444444444 33 0 1111 0 3 0 2 777 3333333333 0 33 33 55555 1 3333333333333333333333333333 4 7 33 33 0 222222 0 0 4444 0 777 333333333333333333333333 33333 4444444444444444 0 3333333333333333 55555555 0 0 0 33 3333333 33 55 2222222222222222222222222222 0 4444 8 8 8 11 8 8 8 2 4
lowQualScore : . . ................... ...... ..... .. ..... ..... . . .. . .. . . . .. . . . . ....... . ... ... ............. .. . ... .. ...... . . . . ..... . .. . . ....... ... . ... . .. . . . . ..... . ....... . ................ . . . . .... . . . . ... . .. . ...... .... .. .. . ... . ...... ... . .. .......... .. . . . . ... ......... .. ... .. . . . ........ .. .. ......... . . ... . .... ... . . . .... ... ............ ..... . ............................ .. ... . . ......... ...... .......... . . .................... . . . . ... .... .... . . ..... . . .... . ... . .... . .. . . ... .. . . .... ........ . . ..... ... . ....... . ... . . ........ .. . .... ........ . ... . . .. .. . .. ........... . . .. .. .. ... ... .... .. ....... . . ... ............................................................................................ . ........................ ...... . ..... ...... . .. .. ........ .. . . . .. .... . . .. ...... .... .. . . .. . . . . .... ... . . ..... ..... ... ..... . .... .. . . . . . . . . . ....... .. . . .. . .. . . .. ....... . . . . .... . . . . .................................................................................. .. . .... . . . . ... .......... . .. .. ..... . ............................ . . .. .. . ...... . . .... . ... ........................ ..... ................ . ................ ........ . . . .. ....... .. .. ............................ . .... . . . .. . . . . .
lowQualScore : 0 0 2222222222222222222 555555 99999 99 55555 99999 0 0 99 0 44 0 4 4 11 4 2 0 0 2222222 0 888 888 5555555555555 99 0 000 99 555555 0 0 0 7 77777 0 33 7 7 0000000 777 7 333 7 88 7 7 5 7 77777 7 7777777 7 2222222222222222 3 7 5 2 2222 3 7 7 7 888 7 22 7 222222 8888 22 22 8 000 0 222222 777 7 77 8888888888 00 0 0 0 0 000 000000000 00 888 00 8 0 8 00000000 88 00 888888888 0 0 000 0 0000 000 0 2 0 2222 888 222222222222 55555 0 5555555555555555555555555555 88 555 8 8 000000000 888888 6666666666 0 0 66666666666666666666 0 0 0 0 000 0000 2222 0 0 00000 0 8 0000 0 888 0 0000 8 66 7 7 222 22 7 3 3333 88888888 7 7 77777 888 7 7777777 7 555 7 7 00000000 00 0 8888 88888888 0 222 0 0 00 00 0 00 66666666666 8 0 00 00 00 000 666 4444 66 2222222 0 0 555 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 222222222222222222222222 222222 0 88888 888888 0 77 22 33333333 22 7 7 7 55 2222 7 7 22 222222 7777 22 2 7 55 7 7 3 7 8888 777 7 7 77777 77777 555 00000 7 2222 22 7 7 7 7 7 7 7 7 7 5555555 22 0 0 00 8 00 0 0 00 0000000 7 7 3 0 7777 0 0 0 5 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 88 0 2222 0 2 0 5 555 8888888888 0 88 88 00000 0 3333333333333333333333333333 0 3 88 88 0 222222 0 0 8888 0 000 222222222222222222222222 55555 8888888888888888 0 8888888888888888 22222222 0 0 0 88 8888888 88 00 8888888888888888888888888888 0 8888 0 0 0 22 0 0 0 3 0
consensus : TTAAGGATGTT-CT-CTGGT--GAGTAT--GA-----T-TTTTTTC-NT-G-AAT--T--AAACTT--TTT-----AA-A---T-AACCCAT-CTT--A-AA-CTCATT-CAT-CT-TGACCA--GAAAGGCAAATTCAAAC-A-CAA-------GA-A---AA---GG-------------TAT--GT-TAGTG-C-GG--AC---T--TTAAA-GAGTT-ACAGCCCCT-CAAAG-TTA----CCCCTTTGCT--GAA-AG-TTA---C---TTTTTT---C-TTTTGAAA---ATCA-CCAT--T-TTCCAC-AAGAAAA-CACAATA-----T-AAAACAAATA-------TTCAT-GACAGN---------AAT--AAT-TTCA-TTATCTTTTATTT----CA-TGAA-AA-TTAAT-CA--T-AA--TTTATAA-TT------TT-T--AT--AACT--TTTAC---A-TAA-TT---TTTTTTCAAA---AATT-CTAG-AA-------T--AATAAC--AGATT-ATCT-AG-CAT-TATTG-GG---------GGAA--AANA-TG--ACACAAA-TTTTAAGT---C----AAATTTT--GTC--------AA-AAAA-TTCA---AT-CTA----GC---AGAGTTCC-TGAATT-AAACT---TTTT--GTG--A---AA----TTGCCAA---C-GCAGA-TT-------TGAA-A-CA--------TA--TT--TTT---GCTCATTTT---------GAATGA-----AAAAAA-------A-GTT-GG-GG----G-------TA-G-T-TGTGCA-TTGGGAACAAA-GTTT---TG----AACCCA-TTTTGTG-T-C--C--CACCC-CCTTCTC----ATTT-TTG-TCAT-AAATT----TCAACATC-AATT-ACAATAT-TATGA--T-TTGT-TAT----AAA-----T-ATATTT-TC-TTC-----AAT---TCATAT-TTA-------CAA-ATTTTAT-G-TATTTA-TT-TAATCATATAACCA-----AT--ACTG-TCTT--AAAAAGG--T-----AT-AAATAATAT-TG-ATA--TACAA-A--CAA---A-A----ATAATTT-CATT--TATC--ACT---GAAGGAATAC-ATGGTGGAAAAC--AAA--TGCCAC-TAAA---TTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAATTTTTGTTT--GAATAGA-----A----AAA-AAGTA-CT---T-GAG----TTGTCCTT----A-GAAACC-AATTTTTAAAC--AG-T------CAA--C-TTCCAT-GC-ACCCACTTGGA----AGAGATGTG-TACTT-C--CT------GGT-A--AT--GATTTCCC-G--AAT-GAT-GGC-ACC----ATGA---AT-C-C-----ATG--A--TT--TATAACAATTCCCGT----G--GTT-A-CAAA-AT-GG-ATG-T-AT-CT-ACAA----A--GCAG--AACCGATAAG-GA-A--CAAATTAT--TGA-TCTAGTA-GCGC--AAAGAAATATA------AAAATCAACGAAATG-ATCT-TTNTCGTTTTTTTAG-CACGAAC-GCCGCGCCG---------TATATTC---TCT-------------AA------------CAT---------T-------T------------TTA--CCTCGG-GA----TT-CGTTTT-GATGAATAAA---TTC----------ATTGTT-TA--CGTTGGT--GATTTTTT-----AAAAACTCTGA-TACTA-TTGAATTAC---TACCNT---TTGTATTCAAAAA--TG--ATGA-TTAAAA-A----AT-AA-TGC-A--TTGGACAT-CAGGGACT--ATAGAA-TCTA---TTA---ACCGAGA---GGCTTTC-CT-CGC----G----C---A--GGAT-CAGA--TC---TTG------GGTAT----C-G-ATAT-TT-AGTTT-G--TAGA-TT----TTTTTAAAAA--TAAAAC-TAC-TT---AAT-GG--C-ACC---------ACAA-ATTCAC--T-C-AGA-AC-TA--TATCAACA-GCCTT-GGG-TTCAGCCACTACGTNTGC
Reference ( family-2905 ) : TTAAGGATGTT-CT-CTGGT--G-G-AT--GA-----T-TTTTTTC-TT-G-AAT--T--AAACTT--TTT-----AA-A---T-AACCCAT-CTT--A-AA-CTCATT-CAT-CT-TGACCA--GAAAGGCAAATTCAAAC-A-CAA-------GA-A---AA---GG-------------TAT--GT-TAGTG-C-GG--AC---T--TTAAA-GAGTT-ACAGCCCCT-CAAAG-TTA----CCCCTTTGCT--GAA-AG-TTA---C---TTTTTT---C-TTTTGAAA---ATCA-CCAT--T-TTCCAC-AAGAAAA-CACAATA-----T-AAAACAAATA-------TTCAT-GACAGN---------AAT--AAT-TTCA-TTATCTTTTATTT----CA-TGAA-AA-TTAAT-CA--T-AA--TTTATAA-TT------TT-T--AT--AACT--TTTAC---A-TAA-TT---TTTTTTCAAA---AATT-CTAG-AA-------T--AATAAC--AGATT-ATCT-AG-CAT-TATTG-GG---------GGAA--AANA-TG--ACNCAAA-TTTTAAGT---C----AANTTTT--GTC--------AA-AAAA-TTCA---AT-CTA----GC---AGAGTTCC-TGAATT-AAAC----TTTC--GTG--A---AA----TTGCCAA---C-GCAGA-TT-------CGAA-A-NA--------TA--TT--TTT---GCTCATTTT---------GAATGA-----AAAAAA-------A-GTT-GG-GG----G-------TA-G-T-TGTGCA-TTGGGAACAAA-GNTT---TG----AACCCA-TTTTGTG-T-C--C--CACCC-CCTTCTC----ATTT-TTG-TCAT-AAATT----TCAANNTC-AATT-ACAATAT-TATGA--T-TTGT-TAT----AAA-----T-ATATTT-TC-TTC-----AAT---TCATAT-TTA-------CAA-ATTTTAT-G-TATTTA-TT-TAATCATATAACCA-----AT--ACTG-TC-T--AAAAAGG--T-----AT-AAATAAT-T-TG--TA--TACAA-A--CAA---A-A----NTAATTT-NATT--TATC--ACT---GAAGAAATAC-ATAGTGGAAAAC--ANA--TGCCAC-TAAA---TTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAATTTT-GTTTC-GAATAGA-----A----AAA-AAGTA-CT---T-GAG----TTGTCCTT----A-GAAACC-AATTTTTAAAC--AG-T------CAA--C-TTCCAT-GC-ACCCACTTGGA----AGAGATGTG-TACTT-C--CT------GGT-A--AT--GATTTCCC-G--AAT-GAT-GAC-ACC----ATGA---AT-C-C-----ATG--A--TT--TATAACAATTCCCGT----G--GTT-A-CAAA-AT-GG-ATG-T-AT-CT-ACAA----A--GCAG--AACCGATAAG-GA-A--CAAATTAT--TGA-TCTAGTA-GCGC--AAAGAAATATA------AAAATCAACGAAATGAATCTGTTNTCGTTTTTTTAG-CACG-AC-GCCGCGCCG---------TAT-TTC---TCT-------------AA------------CAT---------T-------T------------TTA--CCTCGG-GA----TT-CGTTTT-GATGAATAAA---TTC----------ATTGTT-TA--CGTTGGT--GATTTTTT-----AAAANCTCTGATTACTAGTNGAATTACACNTACCNTATATTGNATTCAAAAA--TG--ATGA-TTAAAA-A----AT-AA-TGC-A--TTGGACAT-CAGGGACT--ATAGAA-TCCA---TTA---ACCG------GGCTTTC-CT-CGC----G----C---A--GGAT-CAGA--TC---TTG------GGTAT----C-G-ATAT-TT-AGTTT-G--TAGA-TT----TTTTTAAAAA--TAAAAC-TAC-TT---AAT-GG--C-ACC---------ACAA-ATTCAC--T-C-AGA-AC-TA-CTATCAACA-GCCTT-GGG-TTCAGCCACTATGTATGC
gi|1 : TTAAGG-TGTTTCTGTTGGT--GAG-ATTGGACCTCCT-CTCTTTCATT-GGAAT--TTAAAACTT--TTTTTTTAAACA---T-AACCCATTCTT--G-AA-CTCATTTCAT-CT-TGACCAAAGAAAGGTTAATTCCAAA-A-CAACTGAAAGGA-A---AAAGGGG-------------TAT--GT-T-GTGACAGG--AC---T--TTAAA-GAGTT-ACAGCCCAT-CAAGT-TTGATATCCCTTTTGCTCTGAA-AG-TTAAAAC---TTTTTTTGTC-GTTTGAAAGGGATCA-CCAT--T-TTCCACCAAGTAAA-CACAATAGAAATT-AAAACAAATA-------TTCATTGACAGCCTTTTAGAGAATTAAAT-CTCA-TTATCTTTTATTT----CAATGAA-AAATTAATTCGATT-AA--TTTATAA-TT------TTTT--AT--AACT--TTTAC---A-TAATTT---TTTTTTCAAATTTATTT-CTAGAAA-------TAGAATAACG-AGATT-ATCTCAG-CATATATTA-GGAGCTTGGACGAAA--AAAA-TG--AC-CAAATTTTTATGT---C----AAATTTTTGATC--------AAGAAAA-TTCA---ATATTATTAGGCGGAAGAGTCCT-TGAATTAAAACTTGGTTTC--GTG--G---AA----ATGCCAA---TGGCAGA-TT-------CGAA-A-CAACTTAGGTTA--CTACTTTGTGGCTCATTTTTGATTTAGAGGGTGAAAAGGAAAAAA-------A-GTTCGGTGG----GGTCATATTA-GTT-TGTGCATTTGGGAACAAA-GTTTTTATGGGATAACCTATTTTTGTG-T-C--CCGCACCCGCCTTCTC----ATTTCTTGATCAT-AAATT----TCAACATCGGATT-ACAA-ATATATGACTT-TTG--TATTA--AAA-----TGGTATTC-TT-TCCTGGTGAAT---TTCTAA-TTATTTCAGGCAA-ATTTTATGG-TATTTATTT-TAATCATATAACTACTTACAT--GTTC-TCTT--AAAAAGG--------AT-AAATAAT-TGTG--TA--AACAATACTCAATTCA-ATGATATAAATT-CATT--TATC--ACTTTCGA--GAATAC-ATGTTG--AAACTAAAA--TGCCACTTAAAGTTTTAA
gi|1 : CCAAATTTTTGTAT---GATAGA-----ATATCAAA-CGGTA-TTATTTAGAG----TTGCGCTTTATTA-GACACC-AATTTTTAAACTCAG-T------CAAACC-TTCCAT-GC-ACCACCTTAGAGTGAAGAGATGTGATACTTTC--CT------GGT-ATGATTAGATTTCCG-GT-AAT-GAT-G-C-ACCGGGGATGA---AT-C-CGGGTAATGTTA--TTATCATAACAATTCCCGTTCGTG--GTTGA-CAAA-ATTGG-ATGAT-GTTCT-ACAA----AAAGCAG--ACCGGATAAA-GACA--CAAATTATGTCGA-TCTGGTA-GCGTCAAAAGAAATATA------AAAATCAACAAAATGAATCT-TTTTTGTTTTTTTAGACACG-AC-ACCGCGCCA---------TAT-TTTCTTTCT-------------AAAGAATGCCGATACAT---------TAAACTATT------------TTAGCCTTCTG-GA----TT-CGTTTTTGCT--ATGAA---CTCCATAATGGCAATTATT-TA--CGTTGGT--GATTTTTTT----AAAAACTCTGATTACTAGTT--ATTAC-----CCTT---TTGTATTCAAAAA--TGTTATGA-TTAAGA-A----AT-AA-TGC-ACATTGGACATTCAGGGACT--ATAGAA-TCTA---ATT---ACCG------GGTCTTCGCTGCGC----GGCTAC---A--GGAT-CAGA--T-----TG------GGTAT----C-GCATAT-TT-AGTTTTG--TAGT-TTAGATTTTTTAAAAA--TAAAAC-TAC-TT---AATAGA--CAACT---------ACAATATTCA-----C-AGA-ACTTA-TTATCAACA-GCCTT---G-TTCAGACACTATGcttattgtccaactcttccatgccactgtgacattgacctttgatcttttactgatctctcaaaaatatcacaacaagcgatgttcccttctttagtgtcaatatcccttatgtccaaatttttgtatgatagaatatcaaacggtattatttagagttgcgctttattagacaccaatttttaaactcagtcaaaccttccatgcaccaccttagagtgaagagatgtgatactttcctggtatgattagatttccggtaatgatgcaccggggatgaatccgggtaatgttattatcataacaattcccgttcgtggttgacaaaattggatgatgttctacaaaaagcagaccggataaagacacaaattatgtcgatctggtagcgtcaaaagaaatataaaaatcaacaaaatgaatcttttttgtttttttagacacgacaccgcgccatattttctttctaaagaatgccgatacattaaactattttagccttctggattcgtttttgctatgaactccataatggcaattatttacgttggtgatttttttaaaaactctgattactagttattacccttttgtattcaaaaatgttatgattaagaaataatgcacattggacattcagggactatagaatctaattaccgggtcttcgctgcgcggctacaggatcagattgggtatcgcatatttagttttgtagtttagattttttaaaaataaaactacttaatagacaactacaatattcacagaacttattatcaacagccttgttcagacactatg
gi|10 : ttaaggtgtttctgttggtgagattggacctcctctctttcattggaatttaaaactttttttttaaacataacccattcttgaactcatttcatcttgaccaaagaaaggttaattccaaaacaactgaaaggaaaaaggggtatgttgtgacaggactttaaagagttacagcccatcaagtttgatatcccttttgctctgaaagttaaaactttttttgtcgtttgaaagggatcaccattttccaccaagtaaacacaatagaaattaaaacaaatattcattgacagccttttagagaattaaatctcattatcttttatttcaatgaaaaattaattcgattaatttataattttttataacttttacataatttttttttcaaatttatttctagaaatagaataacgagattatctcagcatatattaggagcttggacgaaaaaaatgaccaaatttttatgtcaaatttttgatcaagaaaattcaatattattaggcggaagagtccttgaattaaaacttggtttcgtggaaatgccaatggcagattcgaaacaacttaggttactactttgtggctcatttttgatttagagggtgaaaaggaaaaaaagttcggtggggtcatattagtttgtgcatttgggaacaaagtttttatgggataacctatttttgtgtcccgcacccgccttctcatttcttgatcataaatttcaacatcggattacaaatatatgacttttgtattaaaatggtattctttcctggtgaatttctaattatttcaggcaaattttatggtatttattttaatcatataactacttacatgttctcttaaaaaggataaataattgtgtaaacaatactcaattcaatgatataaattcatttatcactttcgagaatacatgttgaaactaaaatgccacttaaagttttaacttattgtccaactcttccatgccactgtgacattgacctttgatcttttactgatctctcaaaaatatcacaacaagcgatgttcccttctttagtgtcaatatcccttatgtCTCATTTT---------TAATGA-----AAAAAA-------ATGTC-AG-GG----G-------TA-G-T--GTGCG-TTGG-AACAAA-GTTT---TG----AACC-A-TTTTGAG-TGC--C--CATCC-CCTTTTC----ATTT-T-G-TCAT-AAATT----TCAAC-TC-AATA-ACAATAT-T-CAA--T-TTGT-TAT----AAAA----T-GCATAT-TC-TTC-----AAT---TCATAT-TTA-------CAA-ATCATAT-G-TATTTA-TT-CCATCGTATAA
gi|11 : tcTTAAGGATGTT-CT-CTGGT--G-GTAT--TA-----T-TTTTTTA-AA-GTAAT--A--AAAAAT--AAT-----AA-----T-AACCCAT-TTT--A-A--CTTATT-CAT-CT-TGATCA--GAAAGACAA-TTTAAAC-A-CAC-------GA-A---TA---AG-------------TAT--AT-CAGTG-T-GGT-ACATGTAGTCAAA-GTGTT-ACAGCTCCT-GAAAG-TTA----GCCCTTTGCT--GAA-AG-TTA---TATATATTTT---C-TTTgac
gi|12 : gTTTTAA-C--AG-C------CAA--C-TTTCAT-GC-GACCATAATGA----AGATATATC-CACTT-C--CT------GGT-AT-AT---ATT--CT-GT-TAT-GAT-GAC-ACT----ATGACTCAT-CGC-----ATT--T--TT--TGT--------CTGT----G--ATT-A-CAAA-TT-AA-ATG-T-AG-GT-ACAAAACGA--GCAG--AAACG
gi|13 : agTTAAGGATGTT-CT-CTGCT--T-TTAT--GA-----A-GTTTTTT-CA-A-AATAAT--AAACTT--TTT-----AA-A---T-AACCCA---TT--ATAA-CTCATT-CAT-CT-TCACCA--GGAAGGC-AATTTAAAC-A-CAA-------GAGA---AG---GG-------------TGC--AT-TGGTG-T-CG--AC---T--TC-CA-GAGTT-ACAGGCCCT-ggaaacag
gi|14 : TTGAAA---ATCA-CCAT--T-TTCCAC-AAGAAA--CACAATG-----T-AAACCAAATA-------ATC---------------------------TCCA-TTATCTTTTCGTC----CA-TGAA-AA-TCAGT-CA--T-AA--TTTATAA-TT------TT-G--AT--AACA--TTTACCCAA-AAA--------TGTTCAAC---AATT-CTTT-AA-------T--AATA
gi|15 : c---AATT-CTAG-AAATACACGT--AATAAC--TGATT-ATCT-AG-CAT-TATT--GG---------AGAA--AAC--TG--GCACAAA-TGTTAAGT---C----ATATTTT--GTC---------A-AAAT-TTCA---AT-CTA----GC---t
gi|16 : tttgtcAAGGATGTT-CT-CTGGT--GAG-AT--GA-----C-TTTTTTCATT-C-GAT--T--AAACTT--TTT-----AA-AAAAT-AACCCAT-CTT--A-AAACTCATT-CAT-CT-TGACCA--G--AGGC-AATTCAAA
gi|17 : ta-CACG-ACCGCCGCGCCA---------TAT-TTC---TCT-------------AA-------------AT---------T-------TGATAGATCTATTTTA--CCCCGG-GA----TT-CGTTTT-GATGACTAAA---TTC----------ATTGTT-TA--CGTTGGT--GATTTTTT-----
gi|18 : AT-CT-TGATCA--GAAAGACAA-TTTAAAC-A-CAA-------GT-A---AA---GGATACATGTATATATATAAGT-AAGTG-T-GG--AC---T--TTAAAAGAGTT-ACCGCCCCT-CAAAG-
gi|2 : TTAAGGATGTT-CT-CTGGTTGA-G-AT--GA-----AATTTTTTC-AT-G-AAT--TTTAAACTT--TTTT----AA-A---T-AACCCAT-CTT--A-A--CTCATT-CAT-CTATGACCA--GAAAGGCCAATTCAAAC-A-CAA-------GA-A---AAA--GG-------------TAT--GT-TAGTG-C-GG--AC---T--TTAAA-GAGTT-ACAGCCCCT-CAAAG-TTA-----CCCTTTGCT--GAA-AG--TA---C---TTTTTT---CTTTTTAAAA---ATCA-CCATC-T-TTCCAC-AAG--AA-CACAATA-----T-AAAACAAATA-------TTCAT-GACAGA---------A----AAT-CTCA-TTATC--TTA-TT----CA-TGAA-AA-TTAAT-CA--TGAA--TTTATAATTT------TT-T--ATTAAACT--TTTAC---ATTAA------TTTTTTCAAA---AATT-CTAA-AA-------T--AATAAC--AGATT-ATCT-AG-CAT-TATTG-GG---------GGAACGAAAA-CGACACACAAA-TT---ACT---CGCTAAAATTTT--GTCCACGCAAAAA-AAAA-ATAAAACAT-ATA----GC---AGAGTTCCTTGAATT-AAACT---TTTT--TTG--ATCGAACACTTTGCCAAAGCC-ACAGA-TTACCATCATAAA-A-CA--------TATCTT--CTT---GCTCATTTT---------GAATGA-----AAAAAAAAAACACA-GTT-GA-GGCCAAG-------CAGG-TATGTGCA-TT-GGAACAAA-GATT---TG----AA-CCA--TTTGTGAT-C--C--CACCC-CCCTCTCTCCAATCT-TTG-TCATAAAATTTATATCAACATC-AATTAACAATAA-TATGA--TGCTGTCCATACTAAAA-----TGATATTTCTCACTC-----AATCA-TCATATAATA-------CAA-ATTTAA----TATTTA-TTATAATCATATAACC------AT--ACTGATC-----AAAAGG--TAAAAAAT-AAA-AATAT-TGAATACTTACAA-A--CAA---ATA----ATAATTCAAATTAATATC--ACT---GAAGGAATACAATAGTGG-AAAC--AAATTTG-CAC-AAAC---TTAA
gi|2 : CCAAATTTTTGTTTCCGAATAGATAACAA----AAA-AAGTACCT---T-GAG-----TGTCCTT----C-GAACAC-AATCCTTTAAC--AG-TAATAACCAA--CATTCCATCGCAAAACAC--GGA----AGAGA-----TACTT-CAACTGACCAAGGT-A--AT--GATTTCAC-GGAAAT-GATCGGCAACCA---ATGA---AT-C-C-----ATG--ATCTT--TATAACCATTCCTGT----GCCGTT-A-CAAACAT-GGAATG-TGAT-CCAACAA----G--ACAGAAAACCGATAAGAGA-AACCAAATTAT--TGA-TCTAGTAGGCGC--AAAGAAATATACATGTTAAAATCAACGAAATG-ATCTGTTGTCATTT-----G-CACGAAC-GCC-CACCGCCCAACCAATATATTC---TCTAAACCTGACGACCAA------------TATCAAACTCTAT-------T------------TTA--CCTCGGCGAAACCTTACG-TTT-GATGAATAAAACTTTC----------ATGATTATACCCGCTTGTAGGAACTTTTATACCAAAACCTCTGA----TATTAGAATTACACATACCATATATTG-ATTCAAAAACCTG--ATGA-TTACAA-ATACCATAAA-TGCAA--TTGAACAT-CAAGGACTCAATAGAA-AACA---TCAACTACCG------GGCTTCC-TG-CGCTCAGG----C---AATGGATACAGAATCC---TTGAGAAGAGGTATCAGAC-A-ATAT-TTCAGTTT-G--TAGA-------TCTTTAGAAATCTAAAACTTACGTTCCAAAT-AGAAC-ACCAATCCTACAACAA-ATTCACAAT-CAAGA-AC-TACCCATCAACA-G-CTT-GGGTTTCAGCCcattgtcccaatttcatgcccctgtgacattgacctttgaactttctgacatcccataaatattaacaagtgacaatgtcccttctctagtgcgtatcgatatgtctccaaatttttgtttccgaatagataacaaaaaaagtaccttgagtgtccttcgaacacaatcctttaacagtaataaccaacattccatcgcaaaacacggaagagatacttcaactgaccaaggtaatgatttcacggaaatgatcggcaaccaatgaatccatgatctttataaccattcctgtgccgttacaaacatggaatgtgatccaacaagacagaaaaccgataagagaaaccaaattattgatctagtaggcgcaaagaaatatacatgttaaaatcaacgaaatgatctgttgtcatttgcacgaacgcccaccgcccaaccaatatattctctaaacctgacgaccaatatcaaactctattttacctcggcgaaaccttacgtttgatgaataaaactttcatgattatacccgcttgtaggaacttttataccaaaacctctgatattagaattacacataccatatattgattcaaaaacctgatgattacaaataccataaatgcaattgaacatcaaggactcaatagaaaacatcaactaccgggcttcctgcgctcaggcaatggatacagaatccttgagaagaggtatcagacaatatttcagtttgtagatctttagaaatctaaaacttacgttccaaatagaacaccaatcctacaacaaattcacaatcaagaactacccatcaacagcttgggtttcagcctaaccggccataa
gi|20 : ttaaggatgttctctggttgagatgaaattttttcatgaattttaaacttttttaaataacccatcttaactcattcatctatgaccagaaaggccaattcaaacacaagaaaaaggtatgttagtgcggactttaaagagttacagcccctcaaagttaccctttgctgaaagtacttttttctttttaaaaatcaccatctttccacaagaacacaatataaaacaaatattcatgacagaaaatctcattatcttattcatgaaaattaatcatgaatttataattttttattaaacttttacattaattttttcaaaaattctaaaataataacagattatctagcattattgggggaacgaaaacgacacacaaattactcgctaaaattttgtccacgcaaaaaaaaaataaaacatatagcagagttccttgaattaaactttttttgatcgaacactttgccaaagccacagattaccatcataaaacatatcttcttgctcattttgaatgaaaaaaaaaaacacagttgaggccaagcaggtatgtgcattggaacaaagatttgaaccatttgtgatcccacccccctctctccaatctttgtcataaaatttatatcaacatcaattaacaataatatgatgctgtccatactaaaatgatatttctcactcaatcatcatataatacaaatttaatatttattataatcatataaccatactgatcaaaaggtaaaaaataaaaatattgaatacttacaaacaaataataattcaaattaatatcactgaaggaatacaatagtggaaacaaatttgcacaaacttaacattgtcccaatttcatgcccctgtgacattgacctttgaactttctgacatcccataaatattaacaagtgacaatgtcccttctctagtgcgtatcgatatgtctTTCAC--T-C-AGA-AC-TA--TATCAACA-GCCTTGGGG-TTCAGCCATTA-GTATGCtaaccggccataa
gi|3 : TTAAGGATGTT-CT-CTGGT-----------------T-TTTTTTC-TT-G-AAT--T--AAACTT--TTT-----GA-A---T-AACCCAT-TTT--A-AA-CTCATT-CAT-CT-TGACCA--GAACGGCAAATTCAAAC-A-CAA-------GA-A---AA---AG-------------TAT--GT-TAGTG-C-GG--AC---C--TTAAA-GAGTT-ACAGCCCCT-GAAAG-TTA----CCCCTTTGCT--GAA-AG-TTA---C---TTTTTT---C-TTTTAAAA---CTTA-CCAT--T-TTCCAC-AAGAAAA-CACAATA-----T-AAAACAAATA-------TTCAT-GACA-T---------AAT--AAT-TTCA-TTATCTTTTATTT----CA-TGAA-AA-TTAAT-CA--T-AA--TTTATAA--T------TT-T--AT--AACT--TTT-C---A-TAA-TT---TTTTTTCAAA---AATT-CTAG--A-------T--AATAAC--AGATT-ATAT-AG-CAT-TAT---GG---------GGAA--AATA-TG--ACCCAAA-TTTTAAGT---C----AAA-TTT--GTC--------AA-AAAA-TCCA---AT-CTA----GCA--AGAGTTTC-TGAATT-AAAC----TTTT--GTG--A---AA----TTGCTAC---T-GTAGA-TT-------TGAA-ATCA--------TA--TT--TTT---GCTCA-TTT---------GAATG------AAAAAA-------A-GTT-GG-GG----G-------TA-G---TGTGCA-TTGGGAACAAA-GTTT---TG----AACCCA-TTTT-TG-T-C--C--CACCC-CCTTC-C----ATCT-TTG-TCAT-AAATT----TC-ACATC-AATT-ACAATAT-GATGA--T-TTGT-TAT----AAA-----T--TATTT-CC-TTC-----AAT---TCATAT-TTA-------CAA-ATTTTAT-G-TATTTA-TC-TAATTATATAACCA-----ATCAACTG-TC-T--AAAAAGG--T-----AT-AAATAAT-T-TG--TA--TATGA-A--CAA---A-A----TTAATTC-CATT--TATC--ACT---GAA-AATTAC-GTGGTGGAAAAC--AAG--TG--AC-TAAA---TTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAATTTT-GTTTT-GAATAGA-----A----AAACAAGTA-CT---T-GAG----TTATCCTT----A-AAAACC-AATTTTT-AAC--AGTT------CAA--C-TTCCAT-GC-ACCCA-TTGGA----AGAG-TGTG-TACTT-C--CT------GGT----AT--GGTTT-TC-G--AAA-GAT-G-C-ACC----ATG----AT-C-C-----ATG--A--TT--AAT-AC-ATTCCC-T----G--GTT-A-CAAA-AT-GG-ATG-T-AT-CT-ACAA----A--GCAC--AACCGATAAG-GA-A--CAAATT-T--TGA-TCTAGTA-GCGC--AAAGAAATATA------AAAATCAACAAAGTG-ATCC-TTATCG---TTTTAG-CATGAAC-GCCGCGCCG---------CATATTC---TCT-------------AA------------CAT---------T-------T------------TTA--CCTCGG-GA----TT-CATTTT-GATGAATAAA---TTC----------ATTGTT-TA--CATTGGT--GATTTTTT-----AAAAACTCTGA-TAC---TTGA--------TACCCT---TTTTATTC-AAAA--TG--ATGAGTTAAAA-A----AT-AATTGC-A--CTGGACAT-CAGGGACT------AA-T-TA---TT-----CCGAAA---GGCTTTC-CT-CGC----G----C---A--GGAT-CAGA--TCAATTTG------GGGAT----C-G-ATAT-TT-AGTTT-G--TAGATTT----TTTTTAAATA--TAAAA--TACTTT---AAT-GG--C-ACCTT-------ACAA-ATTCAC--T-C-AGT-AC-TA--TATCAACAGGCCTT-GGG-TTCAGCCACTACGTTTGC
gi|4 : TTAAGGATGTT-CT-TTGGT--GAG-AT--GAAA---T-TTTTTCA-TT-G-AAT--T--AAACTTCCTTT-----GA-A---TTAACCCAT-CTCTGG-AA-CTCATT-CATTCT-TGACCA--GAAAGGCAATTCCAAACCATCAA-------GA-ATAAGA---GG-------------TAT--GTGTAGTG-C-GGGGAC---TG-TTAAAAGAGTTGACAGTCCCTTCAAGGGTTA----CCC-TTTGCCTGGAATAGCTTA---C---TTTTT----C-TTTGGATAT--ATCAGCCATATTATTCCAC-AAGAAAATCA-AATA-----TCAAAACAAATACCACCCATTCAT-GACAGT---------AAT--AATCTTCAATTATCTAGTATCTTCCTCACTGAATAA-TTAAT-C---T-AACTTTTATAA-TTATGATATT-T--AT--AGCTGCTTTAC---A-TTA-TTGACTTTTTCCAAA---AAATACGAC-AA-------T--AATAACTCAGATTTATCT-AGGCAT-TATTGTGG---------GGAA--AACAATG--ACACAAA-TTTTAAGTTGTC----AAATTTT--GGC--------AA-AAAAGTTCA---AT-CTA----GC---AGAGTTCCGTGA-TT-AAAC----TTTTTTGTGGAA---AA----TTGATAAT--C-GCAGAATT-------TGAATG-AA--------T---TT--TTT---GCTCATT-----------GAATGA-----AAAAA----------GTT-AG-GG----A-------TA-G-C--GTGCA-TTGG-AACAAAAGGTT---TG----AACCAT-TTTTGTG-T-CTCC--CACCC-CTTTCTC----ATTT-TT--TCAT-AAATT----TCAAC-TC-AAAT-ACAATAT--ATGA--T-TTGTATAT----AAA-----T-ATATTT-TC-TTC-----AATTTATCATAT-TTA-------CAATTTTTTAT-GATATTTA-TT-TAATCATATA---A-----AT--ACTG-TCTT--AAAAAGGTCT-----ATCAAAT-AT-T-TGTATA--TACAA-A--CAA---T-A----ATAA-TT-AATT--TATTAAACT---GAAGAAATAC---AGTGAAA
gi|5 : AAGGATGTT-CT-CTGGT--G-GTGT--GAA----T-TTTTTTC-AAAG-AAA--T--AAACTC--TTT-----GA-A---T-AACGCAT-TTT--A-A--CTCATT-CAT-CT-TGACCA--GAAAGGCAA-TTTAAAA-A-CAA--------A-A---AA---GG-------------TAT--GT-CAGTA-T-GA--AC---T--TTAAA-GAGAT-ACAGCTCCT-CAAAG-TTT----CCCCTTTGCT--GAA-AG-TTA---C---TTTTTT---T-TTTCGAAA---ATCA-CCAT--T-TTCTAC-AA-AAAA-CACAATA-----T-AAAACAAATA-------TT-AT-GACA-A---------AAT--AATATTCA-TTATCATCTATTT----CA-TGAA-AA-TTAAT-CA--T-AA--CGTATAA-TT------TT-TACAT--AAAT--TTT
gi|6 : cAATTTT-GTTT--GAATAGA-----A----TAA-AAGTA--T---T-GAGGGGGCTGTCCTT----AAGAAACCCAATTTTGAAAC--AG-T------CAA--C-TTCTAT-GC-ACCCACTTGGA----AGAGATGTG-CACTT-C--CT------GGTAA--AT--GATTTTCCGG--AATGGAT-GGC-ACC----ATGA---ATCC-C-----ATG--C--TT--CTTAGAATTTTCTGT----G--GTT-ACCAAA-AT-GG-ATG-T-AT-CT-ACAAC---A--GC-G--AACCGATAAC-AA-A---AAATTAA--TGAGTCTAGTA-GCGC--AAAGAAgtcaaga
gi|7 : tattctattttaatctccTC-AATT-ACAATAT----GA--T-TTGT-TAT----AAAATGCAT-ATATAT-TC-TTC-----AAT---TCATAT-TTA-------AAA-ATTTTAT-G-TATTTA-TT-TTATCACA-AA--A-----AT--ACTG-TC-TAAAAAAAAG--T-----AT-AA--AATAT-TG--TA--CACAA-A--CAA-----------T-ATTT-CATT--TATC--ACT---GAAG-AATAC-AT-GTGG-AAAC--ATA--TGCCAC-TAAA---TTAA
gi|8 : CCAAATTTG-GTTT-------------------------GTA-CT---T-GAG----TTATCATT----A-GAAACC-AATTTT--AAC--AG-T------CAA--C-TTCCAT-GC-ACCCACTTGGA----AGATATGTG-TACTT-C--CT------GGT-A---T--GATTTCCC-G--AAT-GAT-GAC-ACC----ATGA---AT-C-C-----ATA--A--TT--TATAACATTCCCTGT----G--GTT-A-CAAA-AT-GG-ATG-T-AT-CT-ACAA----A--GCAG--AACCGATAAG-AA-A--CAAATCAT--TGA-TCTAGTA-GCGC--AAAGAAACAT-------AAAATCAACcattgtccaattccatgcactgtgacattgacctttgaccttctgactccaaaattcactggtattaagccaatgcc
gi|9 : tcttatgtAAA--TG--ATGA-TTAAAAAA----AT-AA-TGC-A--TTGGACAT-CAGGGACT--ATAGAATTCTAAATTTA---GCCGAGAAGAAGCTTTC-CT--GC----G----CTGGA--TGAT-CAGA--T----TGG------GGTAT----CAG-ATATGTT-AGTTT-GGTTAGA--T----TTTTTAAAAA--TAAAA--TAC-TT---AA--------A-----------ACAA-AATCAC--TCC-AGACAC-TA--TATCAACA-TCTTT-GGG-TTCAGC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TAATGACCTTTTAAACCTAGGAATGACATTTACAGTGCTTATATACACAGGCACTTGACGTTTTAAATATATTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 5555555555555555555 2222 11111 22222 111111 1 1111111 111 2222222222222 11 111111 1 11111 11 1111111 111 111 11 11111 2222222 4444444444444444 1 1111 1 111 111111 1111 111 333333 111 2222222222 11 333333333 11 11 22222222 11 222222222 111 1111 222 2 1 33333 222222222222 33333 1 4444444444444444444444444444 11 111 1 333333333 333333 2222222 44444444444444444444 1 111 1111 1111 11 11 1111 1111 1 1111 1 2222 33333333 11111 222 2222222 22222222 11 111 33333333 1 33 11 11 3333333333 1 11 11 11 111 11 1111 11 11 11 1 1 111 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 3333333333 1 111111 22222 222222 11 11111111 1111 111111 2222 22 2222 111 11111 11111 11111 1111 2222222 11 11 11 3333333 1 1 1111 1 444444444 11 888888888888888888888888888888888888888888888888888888888888 11 1 2222 1 1 111 4444444444 1 11 11 222222 1 1 6666666666666666 222 11 11 1 222222 1 1 1111 1 111 333333333333333333333 11111 4444444444444444 1 5555555555555555 22222222 1 1 1 11 4444444 11 22 8888888888888888888888888888 1 1111 11 1
lowQualScore : 5 5 2222222222222222222 3333 5 44444 66 66666 5 5 5 222222 5 4 4 66 7 0 5 5 6666666 5 888 333 7777777777777 66 5 888 11 333333 0 5 5 5 66666 1 88 6 6 6666666 111 6 888 6 55 6 6 3 6 66666 6 1111111 6 7777777777777777 3 6 3 3 4444 3 6 6 6 000 6 99 6 999999 0000 99 99 0 444 8 333333 111 6 77 1111111111 99 8 8 8 8 0 8 222222222 3 11 999 11 5 8 0 11111111 0 11 999999999 8 8 444 8 7777 222 0 3 0 00000 999999999999 55555 0 9999999999999999999999999999 33 777 0 222222222 000000 6666666 8 8 8 99999999999999999999 8 0 8 1 444 7777 3333 99 8 11 8 0 7777 8 888 8 7777 0 0 6 6 6666 99 6 3 3333 11111111 6 6 66666 000 6 1111111 6 777 6 6 99999999 11 8 999 11111111 8 777 5 66 11 8 11 0 1111111111 0 5 11 11 11 444 55 8 1111 88 33 33 5 0 777 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3 33 3 7777777777 0 666666 8 00000 000000 8 00 99 99999999 99 6 6 6 44 4444 6 6 99 999999 1111 99 5 6 22 6 888 6 0000 111 6 6 66666 77777 999 44444 0 4444 99 6 6 6 6 6 6 6 6 6 3333333 99 8 8 11 0 11 8 8 11 2222222 0 3 3 1 2222 0 9 2 000000000 9 33 222222222222222222222222222222222222222222222222222222222222 33 0 1111 0 3 0 2 777 3333333333 0 33 33 999999 3 3 5555555555555555 1 333 7 7 33 33 0 222222 0 0 4444 0 777 444444444444444444444 33333 4444444444444444 0 3333333333333333 55555555 0 0 0 33 3333333 33 55 2222222222222222222222222222 0 4444 8 8 8 99 8 8 8 2 1
lowQualScore : . . ................... .... . ..... .. ..... . . . ...... . . . .. . . . . ....... . ... ... ............. .. . ... .. ...... . . . . ..... . .. . . ....... ... . ... . .. . . . . ..... . ....... . ................ . . . . .... . . . . ... . .. . ...... .... .. .. . ... . ...... ... . .. .......... .. . . . . . . ......... . .. ... .. . . . ........ . .. ......... . . ... . .... ... . . . ..... ............ ..... . ............................ .. ... . ......... ...... ....... . . . .................... . . . . ... .... .... .. . .. . . .... . ... . .... . . . . .... .. . . .... ........ . . ..... ... . ....... . ... . . ........ .. . ... ........ . ... . .. .. . .. . .......... . . .. .. .. ... .. . .... .. .. .. . . ... ........................................................................................... . .. . .......... . ...... . ..... ...... . .. .. ........ .. . . . .. .... . . .. ...... .... .. . . .. . ... . .... ... . . ..... ..... ... ..... . .... .. . . . . . . . . . ....... .. . . .. . .. . . .. ....... . . . . .... . . . ......... . .. ............................................................ .. . .... . . . . ... .......... . .. .. ...... . . ................ . ... . . .. .. . ...... . . .... . ... ..................... ..... ................ . ................ ........ . . . .. ....... .. .. ............................ . .... . . . .. . . . . .
lowQualScore : 0 0 0000000000000000000 4444 0 99999 99 22222 0 0 0 000000 0 4 4 11 4 2 0 0 2222222 0 888 888 5555555555555 99 0 000 99 555555 0 0 0 7 77777 0 33 7 7 0000000 777 7 333 7 88 7 7 5 7 77777 7 7777777 7 2222222222222222 3 7 5 2 2222 3 7 7 7 888 7 22 7 222222 8888 22 22 8 000 0 222222 777 7 77 8888888888 00 0 0 0 0 8 0 000000000 2 00 888 00 6 0 8 00000000 8 00 888888888 0 0 000 0 0000 000 0 2 0 88888 222222222222 55555 0 5555555555555555555555555555 88 555 6 000000000 666666 0000000 0 0 0 66666666666666666666 0 0 0 0 000 0000 2222 00 0 00 0 8 0000 0 888 0 0000 8 6 7 7 5555 22 7 3 3333 88888888 7 7 77777 888 7 7777777 7 555 7 7 00000000 00 0 666 88888888 0 222 8 44 00 0 00 8 0000000000 8 8 00 00 00 000 88 0 0000 66 88 88 0 0 555 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2 88 2 2222222222 0 222222 0 88888 888888 0 77 22 33333333 22 7 7 7 55 2222 7 7 22 222222 7777 22 2 7 55 7 777 7 8888 777 7 7 77777 77777 555 00000 7 2222 22 7 7 7 7 7 7 7 7 7 5555555 22 0 0 00 8 00 0 0 00 0000000 7 3 3 0 7777 0 2 5 000000000 8 88 555555555555555555555555555555555555555555555555555555555555 88 0 2222 0 2 0 5 555 8888888888 0 88 88 333333 3 3 0000000000000000 0 333 3 3 88 88 0 222222 0 0 8888 0 000 222222222222222222222 55555 8888888888888888 0 8888888888888888 22222222 0 0 0 88 8888888 88 00 8888888888888888888888888888 0 8888 0 0 0 00 0 0 0 0 0
consensus : TTAAGGATGTT-CT-CTGGT-GAGTAT--G-A-----T-TTTTTTCAT--G-AAT--T--AAACTT--TTT-----AA-AT-AACCCAT-CTT--A-AACTCATT-CAT-CT-TGACCA--GAAAGGCAAATTCAAAC-A-CAA-------GA-A---AA---GG-------------TAT--GT-TAGTG-C-GG--AC---T--TTAAA-GAGTT-ACAGCCCCT-CAAAG-TTA----CCCCTTTGCT--GAA-AG-TTA---C---TTTTTT---C-TTTTGAAA---ATCA-CCAT--T-TTCCAC-AAGAAAA-CACAATA-----T-AAAACAAATA-------TTCAT-GACAGN---------AAT--AAT-TTCA-TTATCTTTTATTT----CA-TGAA-AA-TTAAT-CA--T-AA--TTTATAA-TT------TT-T--AT--AACT--TTTAC---A-TAA-TT---TTTTTTCAAA---AATT-CTAG-AA-------T--AATAAC--AGATT-ATCT-AG-CAT-TATTG-GG---------GGAA--AANA-TG--ACACAAA-TTTTAAGT---C----AAATTTT--GTC--------AA-AAAA-TTCA---AT-CTA----GC---AGAGTTCC-TGAATT-AAAC-T---TTTTGTG--A---AA----TTGCCAA---C-GCAG-ATT-------TGAA-A-CA--------TA--TT--TTT---GCTCATTTT---------GAATGA-----AAAAAA-------A-GTT-GG-GG----G-------TA-G-T-TGTGCA-TTGGGAAC-AAAGTTT---TG----AACCCA-TTTTGTG--T-CC--CACCC-CCTTCTC----ATTT-TTG-TCAT-AAATT----TCAACATC-AATT-ACAATAT-TATGA--T-TTGT-TAT----AAA-----T-ATATTT-TC-TTC-----AAT---TCATAT-TTA-------CAA-ATTTTAT-G-TATTTA-TT-TAATCATATAACCA-----AT--ACTG-TCT-TAAAAAGG--T-----AT-AAATAATATTG-ATA--TACAA-A--CAA---A-A----ATAATTTC--ATT--TATC--ACT---GAAGGAA-TAC-ATGGTGGAAAAC--AAA--TGCCAC-TAAA---TTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAATTTTTGTTT--GAATAGA-----A----AAA-AAGTA-CT---T-GAG----TTGTCCTT----A-GAAACC-AATTTTTAAAC--AG-T------CAA--C-TTCCAT-GC-ACCCACTTGGA----AGAGATGTG-TACTT-C--CT------GGT-A--AT--GATTTCCC-G--AAT-GAT-GGC-ACC----ATGA---AT-C-C-----ATG--A--TT--TATAACAATTCCCGT----G--GTT-A-CAAA-AT-GG-ATG-T-AT-CT-ACAA----A--GCAG--AACCGATAAG-GA-A--CAAATTAT--TGA-TCTAGTA-GCGC--AAAGAAATATA------AAAATCAACGAAATGA-TCT-TTNTCGTTTTTTTAG-CACGAACGCCGCGCCG---------TATATTCT--CT-------------AA------------CAT---------T-------T------------TTA--CCTCGG-GA----TT-CGTTTT-GATGAATAAA---TTC----------ATTGTT-TA--CGTTGGT--GATTTTTT-A----AAAA-CTCTGAT-ACTA-TTGAATTAC---TACCNT---TTGTATTCAAAAA--TG--ATGA-TTAAAA-A----AT-AA-TGC-A--TTGGACAT-CAGGGACT--ATAGAA-TCTA---TTAACCG---ANAGGCTTTC-CT-CGC----G----C---A--GGAT-CAGA--TC---TTG------GGTAT----C-G-ATAT-TT-AGTTT-G--TAGA-TT----TTTTTAAAAA--TAAAAC-TAC-TT---AAT-GG--C-ACC---------ACAA-ATTCAC--T-C-AGA-AC-TA--TATCAACA-GCCTT-GGG-TTCAGCCACTACGTNTGC
Reference ( family-2905 ) : TTAAGGATGTT-CT-CTGGT-GAGTAT--G-A-----T-TTTTTTCNT--G-AAT--T--AAACTT--TTT-----AA-AT-AACCCAT-CTT--A-AACTCATT-CAT-CT-TGACCA--GAAAGGCAAATTCAAAC-A-CAA-------GA-A---AA---GG-------------TAT--GT-TAGTG-C-GG--AC---T--TTAAA-GAGTT-ACAGCCCCT-CAAAG-TTA----CCCCTTTGCT--GAA-AG-TTA---C---TTTTTT---C-TTTTGAAA---ATCA-CCAT--T-TTCCAC-AAGAAAA-CACAATA-----T-AAAACAAATA-------TTCAT-GACAGN---------AAT--AAT-TTCA-TTATCTTTTATTT----CA-TGAA-AA-TTAAT-CA--T-AA--TTTATAA-TT------TT-T--AT--AACT--TTTAC---A-TAA-TT---TTTTTTCAAA---AATT-CTAG-AA-------T--AATAAC--AGATT-ATCT-AG-CAT-TATTG-GG---------GGAA--AANA-TG--ACACAAA-TTTTAAGT---C----AAATTTT--GTC--------AA-AAAA-TTCA---AT-CTA----GC---AGAGTTCC-TGAATT-AAAC-T---TTTTGTG--A---AA----TTGCCAA---C-GCAG-ATT-------TGAA-A-CA--------TA--TT--TTT---GCTCATTTT---------GAATGA-----AAAAAA-------A-GTT-GG-GG----G-------TA-G-T-TGTGCA-TTGGGAAC-AAAGTTT---TG----AACCCA-TTTTGTG--T-CC--CACCC-CCTTCTC----ATTT-TTG-TCAT-AAATT----TCAACATC-AATT-ACAATAT-TATGA--T-TTGT-TAT----AAA-----T-ATATTT-TC-TTC-----AAT---TCATAT-TTA-------CAA-ATTTTAT-G-TATTTA-TT-TAATCATATAACCA-----AT--ACTG-TCT-TAAAAAGG--T-----AT-AAATAATATTG-ATA--TACAA-A--CAA---A-A----ATAATTTC--ATT--TATC--ACT---GAAGGAA-TAC-ATGGTGGAAAAC--AAA--TGCCAC-TAAA---TTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAATTTTTGTTT--GAATAGA-----A----AAA-AAGTA-CT---T-GAG----TTGTCCTT----A-GAAACC-AATTTTTAAAC--AG-T------CAA--C-TTCCAT-GC-ACCCACTTGGA----AGAGATGTG-TACTT-C--CT------GGT-A--AT--GATTTCCC-G--AAT-GAT-GGC-ACC----ATGA---AT-C-C-----ATG--A--TT--TATAACAATTCCCGT----G--GTT-A-CAAA-AT-GG-ATG-T-AT-CT-ACAA----A--GCAG--AACCGATAAG-GA-A--CAAATTAT--TGA-TCTAGTA-GCGC--AAAGAAATATA------AAAATCAACGAAATGA-TCT-TTNTCGTTTTTTTAG-CACGAACGCCGCGCCG---------TATATTCT--CT-------------AA------------CAT---------T-------T------------TTA--CCTCGG-GA----TT-CGTTTT-GATGAATAAA---TTC----------ATTGTT-TA--CGTTGGT--GATTTTTT-A----AAAA-CTCTGAT-ACTA-TTGAATTAC---TACCNT---TTGTATTCAAAAA--TG--ATGA-TTAAAA-A----AT-AA-TGC-A--TTGGACAT-CAGGGACT--ATAGAA-TCTA---TTAACCG---AGAGGCTTTC-CT-CGC----G----C---A--GGAT-CAGA--TC---TTG------GGTAT----C-G-ATAT-TT-AGTTT-G--TAGA-TT----TTTTTAAAAA--TAAAAC-TAC-TT---AAT-GG--C-ACC---------ACAA-ATTCAC--T-C-AGA-AC-TA--TATCAACA-GCCTT-GGG-TTCAGCCACTACGTNTGC
gi|1 : TTAAGG-TGTTTCTGTTGGT-GAG-ATTGG-ACCTCCT-CTCTTTCATTGG-AAT--TTAAAACTT--TTTTTTTAAACAT-AACCCATTCTT--G-AACTCATTTCAT-CT-TGACCAAAGAAAGGTTAATTCCAAA-A-CAACTGAAAGGA-A---AAAGGGG-------------TAT--GT-T-GTGACAGG--AC---T--TTAAA-GAGTT-ACAGCCCAT-CAAGT-TTGATATCCCTTTTGCTCTGAA-AG-TTAAAAC---TTTTTTTGTC-GTTTGAAAGGGATCA-CCAT--T-TTCCACCAAGTAAA-CACAATAGAAATT-AAAACAAATA-------TTCATTGACAGCCTTTTAGAGAATTAAAT-CTCA-TTATCTTTTATTT----CAATGAA-AAATTAATTCGATT-AA--TTTATAA-TT------TTTT--AT--AACT--TTTAC---A-TAATTT---TTTTTTCAAATTTATTT-CTAGAAA-------TAGAATAACG-AGATT-ATCTCAG-CATATATTA-GGAGCTTGGACGAAA--AAAA-TG--AC-CAAATTTTTATGT---C----AAATTTTTGATC--------AAGAAAA-TTCA---ATATTATTAGGCGGAAGAGTCCT-TGAATTAAAAC-TTGGTTTCGTG--G---AA----ATGCCAA---TGGCAG-ATT-------CGAA-A-CAACTTAGGTTA--CTACTTTGTGGCTCATTTTTGATTTAGAGGGTGAAAAGGAAAAAA-------A-GTTCGGTGG----GGTCATATTA-GTT-TGTGCATTTGGGAAC-AAAGTTTTTATGGGATAACCTATTTTTGTG--T-CCCGCACCCGCCTTCTC----ATTTCTTGATCAT-AAATT----TCAACATCGGATT-ACAA-ATATATGACTT-TTG--TATTA--AAA-----TGGTATTC-TT-TCCTGGTGAAT---TTCTAA-TTATTTCAGGCAA-ATTTTATGG-TATTTATTT-TAATCATATAACTACTTACAT--GTTC-TCT-TAAAAAGG--------AT-AAATAATTGTG--TA--AACAATACTCAATTCA-ATGATATAAATTC--ATT--TATC--ACTTTCGA--GAA-TAC-ATGTTG--AAACTAAAA--TGCCACTTAAAGTTTTAA
gi|1 : CCAAATTTTTGTAT--GA-TAGA-----ATATCAAA-CGGTA-TTATTTAGAG----TTGCGCTTTATTA-GACACC-AATTTTTAAACTCAG-T------CAAACC-TTCCAT-GC-ACCACCTTAGAGTGAAGAGATGTGATACTTTC--CT------GGT-ATGATTAGATTTCCG-GT-AAT-GAT-G-C-ACCGGGGATGA---AT-C-CGGGTAATGTTA--TTATCATAACAATTCCCGTTCGTG--GTTGA-CAAA-ATTGG-ATGAT-GTTCT-ACAA----AAAGCAG--ACCGGATAAA-GACA--CAAATTATGTCGA-TCTGGTA-GCGTCAAAAGAAATATA------AAAATCAACAAAATGAATCT-TTTTTGTTTTTTTAGACACGA-CACCGCGCCA---------TATTTTCTTTCT-------------AAAGAATGCCGATACAT---------TAAACTATT------------TTAGCCTTCTG-GA----TT-CGTTTTTGCT--ATGAA---CTCCATAATGGCAATTATT-TA--CGTTGGT--GATTTTTTTA----AAAA-CTCTGATTACTAGTT--ATTAC-----CCTT---TTGTATTCAAAAA--TGTTATGA-TTAAGA-A----AT-AA-TGC-ACATTGGACATTCAGGGACT--ATAGAA-TCTA---ATTACCG------GGTCTTCGCTGCGC----GGCTAC---A--GGAT-CAGA--T-----TG------GGTAT----C-GCATAT-TT-AGTTTTG--TAGT-TTAGATTTTTTAAAAA--TAAAAC-TAC-TT---AATAGA--CAACT---------ACAATATTCA-----C-AGA-ACTTAT-TATCAACA-GCCTT---G-TTCAGACACTATGcttattgtccaactcttccatgccactgtgacattgacctttgatcttttactgatctctcaaaaatatcacaacaagcgatgttcccttctttagtgtcaatatcccttatgtccaaatttttgtatgatagaatatcaaacggtattatttagagttgcgctttattagacaccaatttttaaactcagtcaaaccttccatgcaccaccttagagtgaagagatgtgatactttcctggtatgattagatttccggtaatgatgcaccggggatgaatccgggtaatgttattatcataacaattcccgttcgtggttgacaaaattggatgatgttctacaaaaagcagaccggataaagacacaaattatgtcgatctggtagcgtcaaaagaaatataaaaatcaacaaaatgaatcttttttgtttttttagacacgacaccgcgccatattttctttctaaagaatgccgatacattaaactattttagccttctggattcgtttttgctatgaactccataatggcaattatttacgttggtgatttttttaaaaactctgattactagttattacccttttgtattcaaaaatgttatgattaagaaataatgcacattggacattcagggactatagaatctaattaccgggtcttcgctgcgcggctacaggatcagattgggtatcgcatatttagttttgtagtttagattttttaaaaataaaactacttaatagacaactacaatattcacagaacttattatcaacagccttgttcagacactatg
gi|10 : ttaaggtgtttctgttggtgagattggacctcctctctttcattggaatttaaaactttttttttaaacataacccattcttgaactcatttcatcttgaccaaagaaaggttaattccaaaacaactgaaaggaaaaaggggtatgttgtgacaggactttaaagagttacagcccatcaagtttgatatcccttttgctctgaaagttaaaactttttttgtcgtttgaaagggatcaccattttccaccaagtaaacacaatagaaattaaaacaaatattcattgacagccttttagagaattaaatctcattatcttttatttcaatgaaaaattaattcgattaatttataattttttataacttttacataatttttttttcaaatttatttctagaaatagaataacgagattatctcagcatatattaggagcttggacgaaaaaaatgaccaaatttttatgtcaaatttttgatcaagaaaattcaatattattaggcggaagagtccttgaattaaaacttggtttcgtggaaatgccaatggcagattcgaaacaacttaggttactactttgtggctcatttttgatttagagggtgaaaaggaaaaaaagttcggtggggtcatattagtttgtgcatttgggaacaaagtttttatgggataacctatttttgtgtcccgcacccgccttctcatttcttgatcataaatttcaacatcggattacaaatatatgacttttgtattaaaatggtattctttcctggtgaatttctaattatttcaggcaaattttatggtatttattttaatcatataactacttacatgttctcttaaaaaggataaataattgtgtaaacaatactcaattcaatgatataaattcatttatcactttcgagaatacatgttgaaactaaaatgccacttaaagttttaacttattgtccaactcttccatgccactgtgacattgacctttgatcttttactgatctctcaaaaatatcacaacaagcgatgttcccttctttagtgtcaatatcccttatgtCTCATTTT---------TAATGA-----AAAAAA-------ATGTC-AG-GG----G-------TA-G-T--GTGCG-TTGG-AAC-AAAGTTT---TG----AACC-A-TTTTGAG--TGCC--CATCC-CCTTTTC----ATTT-T-G-TCAT-AAATT----TCAAC-TC-AATA-ACAATAT-T-CAA--T-TTGT-TAT----AAAA----T-GCATAT-TC-TTC-----AAT---TCATAT-TTA-------CAA-ATCATAT-G-TATTTA-TT-CCATCGTATAA
gi|11 : tcTTAAGGATGTT-CT-CTGGT-G-GTAT--T-A-----T-TTTTTTAAA--GTAAT--A--AAAAAT--AAT-----AA--T-AACCCAT-TTT--A-A-CTTATT-CAT-CT-TGATCA--GAAAGACAA-TTTAAAC-A-CAC-------GA-A---TA---AG-------------TAT--AT-CAGTG-T-GGT-ACATGTAGTCAAA-GTGTT-ACAGCTCCT-GAAAG-TTA----GCCCTTTGCT--GAA-AG-TTA---TATATATTTT---C-TTTgac
gi|12 : gTTTTAA-C--AG-C------CAA--C-TTTCAT-GC-GACCATAATGA----AGATATATC-CACTT-C--CT------GGT-AT-AT---ATT--CT-GT-TAT-GAT-GAC-ACT----ATGACTCAT-CGC-----ATT--T--TT--TGT--------CTGT----G--ATT-A-CAAA-TT-AA-ATG-T-AG-GT-ACAAAACGA--GCAG--AAACG
gi|13 : agTTAAGGATGTT-CT-CTGCT-T-TTAT--GAA-----G-TTTTTTCA---A-AATAAT--AAACTT--TTT-----AA-AT-AACCCA---TT--ATAACTCATT-CAT-CT-TCACCA--GGAAGGC-AATTTAAAC-A-CAA-------GAGA---AG---GG-------------TGC--AT-TGGTG-T-CG--AC---T--TC-CA-GAGTT-ACAGGCCCT-ggaaacag
gi|14 : TTGAAA---ATCA-CCAT--T-TTCCAC-AAGAAA--CACAATG-----T-AAACCAAATA-------ATC---------------------------TCCA-TTATCTTTTCGTC----CA-TGAA-AA-TCAGT-CA--T-AA--TTTATAA-TT------TT-G--AT--AACA--TTTACCCAA-AAA--------TGTTCAAC---AATT-CTTT-AA-------T--AATA
gi|15 : c---AATT-CTAG-AAATACACGT--AATAAC--TGATT-ATCT-AG-CAT-TATTG-GA---------G-AA--AAC--TG--GCACAAA-TGTTAAGT---C----ATATTTT--GTC---------A-AAAT-TTCA---AT-CTA----GC---t
gi|16 : tttgtcAAGGATGTT-CT-CTGGT-GAG-AT--G-A-----C-TTTTTTCATTCG--AT--T--AAACTT--TTTAAA--AA-AT-AACCCAT-CTTA-A-AACTCATT-CAT-CT-TGACCA--G--AGGC-AATTCAAA
gi|17 : ta-CACGACCGCCGCGCCA---------TAT-TTCT--CT-------------AA-------------AT---------T-------TGATAGATCTATTTTA--CCCCGG-GA----TT-CGTTTT-GATGACTAAA---TTC----------ATTGTT-TA--CGTTGGT--GATTTTTT-
gi|18 : AT-CT-TGATCA--GAAAGACAA-TTTAAAC-A-CAA-------GT-A---AA---GGATACATGTATATATATAAGT-AAGTG-T-GG--AC---T--TTAAAAGAGTT-ACCGCCCCT-CAAAG-
gi|2 : TTAAGGATGTT-CT-CTGGTTGAG-AT--G-A-----AATTTTTTCAT--G-AAT--TTTAAACTT--TTTT----AA-AT-AACCCAT-CTT--A-A-CTCATT-CAT-CTATGACCA--GAAAGGCCAATTCAAAC-A-CAA-------GA-A---AAA--GG-------------TAT--GT-TAGTG-C-GG--AC---T--TTAAA-GAGTT-ACAGCCCCT-CAAAG-TTA-----CCCTTTGCT--GAA-AG--TA---C---TTTTTT---CTTTTTAAAA---ATCA-CCATC-T-TTCCAC-AAG--AA-CACAATA-----T-AAAACAAATA-------TTCAT-GACAGA---------A----AAT-CTCA-TTATC--TTA-TT----CA-TGAA-AA-TTAAT-CA--TGAA--TTTATAATTT------TT-T--ATTAAACT--TTTAC---ATTAA------TTTTTTCAAA---AATT-CTAA-AA-------T--AATAAC--AGATT-ATCT-AG-CAT-TATTG-GG---------GGAACGAAAA-CGACACACAAA-TT---ACT---CGCTAAAATTTT--GTCCACGCAAAAA-AAAA-ATAAAACAT-ATA----GC---AGAGTTCCTTGAATT-AAAC-T---TTTTTTG--ATCGAACACTTTGCCAAAGCC-ACAG-ATTACCATCATAAA-A-CA--------TATCTT--CTT---GCTCATTTT---------GAATGA-----AAAAAAAAAACACA-GTT-GA-GGCCAAG-------CAGG-TATGTGCA-TT-GGAAC-AAAGATT---TG----AA-CCA--TTTGTGA-T-CC--CACCC-CCCTCTCTCCAATCT-TTG-TCATAAAATTTATATCAACATC-AATTAACAATAA-TATGA--TGCTGTCCATACTAAAA-----TGATATTTCTCACTC-----AATCA-TCATATAATA-------CAA-ATTTAA----TATTTA-TTATAATCATATAACC------AT--ACTGATC----AAAAGG--TAAAAAAT-AAA-AATATTGAATACTTACAA-A--CAA---ATA----ATAA-TTCAAATTAATATC--ACT---GAAGGAA-TACAATAGTGG-AAAC--AAATTTG-CAC-AAAC---TTAA
gi|2 : CCAAATTTTTGTTTCCGAATAGATAACAA----AAA-AAGTACCT---T-GAG-----TGTCCTT----C-GAACAC-AATCCTTTAAC--AG-TAATAACCAA--CATTCCATCGCAAAACAC--GGA----AGAGA-----TACTT-CAACTGACCAAGGT-A--AT--GATTTCAC-GGAAAT-GATCGGCAACCA---ATGA---AT-C-C-----ATG--ATCTT--TATAACCATTCCTGT----GCCGTT-A-CAAACAT-GGAATG-TGAT-CCAACAA----G--ACAGAAAACCGATAAGAGA-AACCAAATTAT--TGA-TCTAGTAGGCGC--AAAGAAATATACATGTTAAAATCAACGAAATGA-TCTGTTGTCATTT-----G-CACGAACGCC-CACCGCCCAACCAATATATTCT--CTAAACCTGACGACCAA------------TATCAAACTCTAT-------T------------TTA--CCTCGGCGAAACCTTACG-TTT-GATGAATAAAACTTTC----------ATGATTATACCCGCTTGTAGGAACTTTT-ATACCAAAACCTCTGAT-ATTA---GAATTACACATACCATATATTG-ATTCAAAAACCTG--ATGA-TTACAA-ATACCATAAA-TGCAA--TTGAACAT-CAAGGACTCAATAGAA-AACA---TCAACTA---CCGGGCTTCC-TG-CGCTCAGG----C---AATGGATACAGAATCC---TTGAGAAGAGGTATCAGAC-A-ATAT-TTCAGTTT-G--TAGA-------TCTTTAGAAATCTAAAACTTACGTTCCAAAT-AGAAC-ACCAATCCTACAACAA-ATTCACAAT-CAAGA-AC-TACCCATCAACA-G-CTT-GGGTTTCAGCCcattgtcccaatttcatgcccctgtgacattgacctttgaactttctgacatcccataaatattaacaagtgacaatgtcccttctctagtgcgtatcgatatgtctccaaatttttgtttccgaatagataacaaaaaaagtaccttgagtgtccttcgaacacaatcctttaacagtaataaccaacattccatcgcaaaacacggaagagatacttcaactgaccaaggtaatgatttcacggaaatgatcggcaaccaatgaatccatgatctttataaccattcctgtgccgttacaaacatggaatgtgatccaacaagacagaaaaccgataagagaaaccaaattattgatctagtaggcgcaaagaaatatacatgttaaaatcaacgaaatgatctgttgtcatttgcacgaacgcccaccgcccaaccaatatattctctaaacctgacgaccaatatcaaactctattttacctcggcgaaaccttacgtttgatgaataaaactttcatgattatacccgcttgtaggaacttttataccaaaacctctgatattagaattacacataccatatattgattcaaaaacctgatgattacaaataccataaatgcaattgaacatcaaggactcaatagaaaacatcaactaccgggcttcctgcgctcaggcaatggatacagaatccttgagaagaggtatcagacaatatttcagtttgtagatctttagaaatctaaaacttacgttccaaatagaacaccaatcctacaacaaattcacaatcaagaactacccatcaacagcttgggtttcagcctaaccggccataa
gi|20 : ttaaggatgttctctggttgagatgaaattttttcatgaattttaaacttttttaaataacccatcttaactcattcatctatgaccagaaaggccaattcaaacacaagaaaaaggtatgttagtgcggactttaaagagttacagcccctcaaagttaccctttgctgaaagtacttttttctttttaaaaatcaccatctttccacaagaacacaatataaaacaaatattcatgacagaaaatctcattatcttattcatgaaaattaatcatgaatttataattttttattaaacttttacattaattttttcaaaaattctaaaataataacagattatctagcattattgggggaacgaaaacgacacacaaattactcgctaaaattttgtccacgcaaaaaaaaaataaaacatatagcagagttccttgaattaaactttttttgatcgaacactttgccaaagccacagattaccatcataaaacatatcttcttgctcattttgaatgaaaaaaaaaaacacagttgaggccaagcaggtatgtgcattggaacaaagatttgaaccatttgtgatcccacccccctctctccaatctttgtcataaaatttatatcaacatcaattaacaataatatgatgctgtccatactaaaatgatatttctcactcaatcatcatataatacaaatttaatatttattataatcatataaccatactgatcaaaaggtaaaaaataaaaatattgaatacttacaaacaaataataattcaaattaatatcactgaaggaatacaatagtggaaacaaatttgcacaaacttaacattgtcccaatttcatgcccctgtgacattgacctttgaactttctgacatcccataaatattaacaagtgacaatgtcccttctctagtgcgtatcgatatgtctTTCAC--T-C-AGA-AC-TA--TATCAACA-GCCTTGGGG-TTCAGCCATTA-GTATGCtaaccggccataa
gi|3 : TTAAGGATGTT-CT-CTGGT-----------------T-TTTTTTCTT--G-AAT--T--AAACTT--TTT-----GA-AT-AACCCAT-TTT--A-AACTCATT-CAT-CT-TGACCA--GAACGGCAAATTCAAAC-A-CAA-------GA-A---AA---AG-------------TAT--GT-TAGTG-C-GG--AC---C--TTAAA-GAGTT-ACAGCCCCT-GAAAG-TTA----CCCCTTTGCT--GAA-AG-TTA---C---TTTTTT---C-TTTTAAAA---CTTA-CCAT--T-TTCCAC-AAGAAAA-CACAATA-----T-AAAACAAATA-------TTCAT-GACA-T---------AAT--AAT-TTCA-TTATCTTTTATTT----CA-TGAA-AA-TTAAT-CA--T-AA--TTTATAA--T------TT-T--AT--AACT--TTT-C---A-TAA-TT---TTTTTTCAAA---AATT-CTAG--A-------T--AATAAC--AGATT-ATAT-AG-CAT-TAT---GG---------GGAA--AATA-TG--ACCCAAA-TTTTAAGT---C----AAA-TTT--GTC--------AA-AAAA-TCCA---AT-CTA----GCA--AGAGTTTC-TGAATT-AAAC-----TTTTGTG--A---AA----TTGCTAC---T-GTAG-ATT-------TGAA-ATCA--------TA--TT--TTT---GCTCA-TTT---------GAATG------AAAAAA-------A-GTT-GG-GG----G-------TA-G---TGTGCA-TTGGGAAC-AAAGTTT---TG----AACCCA-TTTT-TG--T-CC--CACCC-CCTTC-C----ATCT-TTG-TCAT-AAATT----TC-ACATC-AATT-ACAATAT-GATGA--T-TTGT-TAT----AAA-----T--TATTT-CC-TTC-----AAT---TCATAT-TTA-------CAA-ATTTTAT-G-TATTTA-TC-TAATTATATAACCA-----ATCAACTG-TC--TAAAAAGG--T-----AT-AAATAAT-TTG--TA--TATGA-A--CAA---A-A----TTAATTCC--ATT--TATC--ACT---GAA--AATTAC-GTGGTGGAAAAC--AAG--TG--AC-TAAA---TTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAATTTTGTTTT--GAATAGA-----A----AAACAAGTA-CT---T-GAG----TTATCCTT----A-AAAACC-AATTTTT-AAC--AGTT------CAA--C-TTCCAT-GC-ACCCA-TTGGA----AGAG-TGTG-TACTT-C--CT------GGT----AT--GGTTT-TC-G--AAA-GAT--GC-ACC----ATG----AT-C-C-----ATG--A--TT--AAT-AC-ATTCCC-T----G--GTT-A-CAAA-AT-GG-ATG-T-AT-CT-ACAA----A--GCAC--AACCGATAAG-GA-A--CAAATT-T--TGA-TCTAGTA-GCGC--AAAGAAATATA------AAAATCAACAAAGTGA-TCC-TTATCG---TTTTAG-CATGAACGCCGCGCCG---------CATATTCT--CT-------------AA------------CAT---------T-------T------------TTA--CCTCGG-GA----TT-CATTTT-GATGAATAAA---TTC----------ATTGTT-TA--CATTGGT--GATTTTTT-A----AAAA-CTCTGAT-AC---TTGA--------TACCCT---TTTTATTC-AAAA--TG--ATGAGTTAAAA-A----AT-AATTGC-A--CTGGACAT-CAGGGACT------AA-T-TA---TT--CCG---AAAGGCTTTC-CT-CGC----G----C---A--GGAT-CAGA--TCAATTTG------GGGAT----C-G-ATAT-TT-AGTTT-G--TAGATTT----TTTTTAAATA--TAAAA--TACTTT---AAT-GG--C-ACCTT-------ACAA-ATTCAC--T-C-AGT-AC-TA--TATCAACAGGCCTT-GGG-TTCAGCCACTACGTTTGC
gi|4 : TTAAGGATGTT-CT-TTGGT-GAG-AT--G-AAA---T-TTTTTCATT--G-AAT--T--AAACTTCCTTT-----GA-ATTAACCCAT-CTCTGG-AACTCATT-CATTCT-TGACCA--GAAAGGCAATTCCAAACCATCAA-------GA-ATAAGA---GG-------------TAT--GTGTAGTG-C-GGGGAC---TG-TTAAAAGAGTTGACAGTCCCTTCAAGGGTTA----CCC-TTTGCCTGGAATAGCTTA---C---TTTTT----C-TTTGGATAT--ATCAGCCATATTATTCCAC-AAGAAAATCA-AATA-----TCAAAACAAATACCACCCATTCAT-GACAGT---------AAT--AATCTTCAATTATCTAGTATCTTCCTCACTGAATAA-TTAAT-C---T-AACTTTTATAA-TTATGATATT-T--AT--AGCTGCTTTAC---A-TTA-TTGACTTTTTCCAAA---AAATACGAC-AA-------T--AATAACTCAGATTTATCT-AGGCAT-TATTGTGG---------GGAA--AACAATG--ACACAAA-TTTTAAGTTGTC----AAATTTT--GGC--------AA-AAAAGTTCA---AT-CTA----GC---AGAGTTCCGTG-ATT-AAACTT---TTTTGTGGAA---AA----TTGATAAT--C-GCAGAATT-------TGAATG-AA--------T---TT--TTT---GCTCA--TT---------GAATG-------AAAAA-------A-GTT-AG-GG----A-------TA-G---CGTGCA-TT-GGAACAAAAGGTT---TG----AACCAT-TTTTGTGTCT-CC--CACCC-CTTTCTC----ATTT-TT--TCAT-AAATT----TCAAC-TC-AAAT-ACAATA--TATGA--T-TTGTATAT----AAA-----T-ATATTT-TC-TTC-----AATTTATCATAT-TTA-------CAATTTTTTAT-GATATTTA-TT-TAATCATATA---A-----AT--ACTG-TCT-TAAAAAGGTCT-----ATCAAAT-AT-TTGTATA--TACAA-A--CAA---T-A----ATAA-TTA--ATT--TATTAAACT---GAAGAAA-TAC-A--GTGAAA
gi|5 : AAGGATGTT-CT-CTGGT-G-GTGT--G-AA----T-TTTTTTCAAA-G-AAA--T--AAACTC--TTT-----GA-AT-AACGCAT-TTT--A-A-CTCATT-CAT-CT-TGACCA--GAAAGGCAA-TTTAAAA-A-CAA--------A-A---AA---GG-------------TAT--GT-CAGTA-T-GA--AC---T--TTAAA-GAGAT-ACAGCTCCT-CAAAG-TTT----CCCCTTTGCT--GAA-AG-TTA---C---TTTTTT---T-TTTCGAAA---ATCA-CCAT--T-TTCTAC-AA-AAAA-CACAATA-----T-AAAACAAATA-------TT-AT-GACA-A---------AAT--AATATTCA-TTATCATCTATTT----CA-TGAA-AA-TTAAT-CA--T-AA--CGTATAA-TT------TT-TACAT--AAAT--TTT
gi|6 : cCCAA--TTTTGTTT--GAATAGA-----A----TAA-AAGTA--T---T-GAGGGGGCTGTCCTT----AAGAAACCCAATTTTGAAAC--AG-T------CAA--C-TTCTAT-GC-ACCCACTTGGA----AGAGATGTG-CACTT-C--CT------GGTAA--AT--GATTTTCCGG--AATGGAT-GGC-ACC----ATGA---ATCC-C-----ATG--C--TT--CTTAGAATTTTCTGT----G--GTT-ACCAAA-AT-GG-ATG-T-AT-CT-ACAAC---A--GC-G--AACCGATAAC-AA-A---AAATTAA--TGAGTCTAGTA-GCGC--AAAGAAgtcaaga
gi|7 : tattctattttaatctTC-AATT-ACAATAT----GA--T-TTGT-TAT----AAAATGCAT-ATATAT-TC-TTC-----AAT---TCATAT-TTA-------AAA-ATTTTAT-G-TATTTA-TT-TTATCACA-AA--A-----AT--ACTG-TCTAAAAAAAAG--T-----AT-AA--AATATTG--TA--CACAA-A--C-------A----AT-ATTTC--ATT--TATC--ACT---GAA-GAA-TAC-AT-GTGG-AAAC--ATA--TGCCAC-TAAA---TTAA
gi|8 : GTA-CT---T-GAG----TTATCATT----A-GAAACC-AATTTT--AAC--AG-T------CAA--C-TTCCAT-GC-ACCCACTTGGA----AGATATGTG-TACTT-C--CT------GGT-A---T--GATTTCCC-G--AAT-GAT-GAC-ACC----ATGA---AT-C-C-----ATA--A--TT--TATAACATTCCCTGT----G--GTT-A-CAAA-AT-GG-ATG-T-AT-CT-ACAA----A--GCAG--AACCGATAAG-AA-A--CAAATCAT--TGA-TCTAGTA-GCGC--AAAGAAACAT-------AAAATCAACcattgtccaattccatgcactgtgacattgacctttgaccttctgactccaaaattcactggtattaagccaatgcc
gi|9 : tcttatgtccaaatttggtttAAA--TG--ATGA-TTAAAAAA----AT-AA-TGC-A--TTGGACAT-CAGGGACT--ATAGAATTCTAAATTTAGCCGAGAAGAAGCTTTC-CT--GC----G----CTGGA--TGAT-CAGA--T----TGG------GGTAT----CAG-ATATGTT-AGTTT-GGTTAGA--T----TTTTTAAAAA--TAAAA--TAC-TT---AA--------A-----------ACAA-AATCAC--TCC-AGACAC-TA--TATCAACA-TCTTT-GGG-TTCAGC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TAATGACCTTTTAAACCTAGGAATGACATTTACAGTGCTTATATACACAGGCACTTGACGTTTTAAATATATTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 5555555555555555555 222 11111 22222 111111 1 1111111 111 2222222222222 11 111111 1 11111 11 1111111 111 111 11 11111 2222222 4444444444444444 1 1111 1 111 111111 1111 111 333333 111 2222222222 11 111 333333333 11 11 22222222 11 222222222 111 1111 222 2 1 33333 222222222222 33333 1 4444444444444444444444444444 11 111 1 333333333 333333 2222222 44444444444444444444 1 111 1111 1111 11 11 1111 1111 1 1111 1 2222 33333333 11111 222 2222222 22222222 11 111 33333333 1 33 11 11 3333333333 1 11 11 11 111 11 1111 11 11 11 1 1 111 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 3333333333 1 111111 22222 222222 11 11111111 1111 111111 2222 22 2222 111 11111 11111 11111 1111 2222222 11 11 11 3333333 1 1 1111 1 444444444 11 888888888888888888888888888888888888888888888888888888888888 11 1 2222 1 1 111 4444444444 1 11 11 222222 1 1 6666666666666666 222 11 11 1 222222 1 1 1111 1 111 333333333333333333333 11111 4444444444444444 1 5555555555555555 22222222 1 1 1 11 4444444 11 22 8888888888888888888888888888 1 1111 11 1
lowQualScore : 5 5 3333333333333333333 777 5 44444 66 66666 5 5 5 222222 5 4 4 66 7 0 5 5 6666666 5 888 333 7777777777777 66 5 888 11 333333 0 5 5 5 66666 1 88 6 6 6666666 111 6 888 6 55 6 6 3 6 66666 6 1111111 6 7777777777777777 3 6 3 3 4444 3 6 6 6 000 6 99 6 999999 0000 99 99 0 444 8 333333 111 6 77 1111111111 99 8 8 8 8 777 222222222 11 999 11 5 8 0 11111111 0 11 999999999 8 8 444 8 7777 222 0 3 0 00000 999999999999 55555 0 9999999999999999999999999999 33 777 0 222222222 000000 6666666 8 8 8 99999999999999999999 8 0 8 1 444 7777 3333 99 8 11 8 0 7777 8 888 8 7777 0 0 6 6 6666 99 6 3 3333 11111111 6 6 66666 000 6 1111111 6 777 6 6 99999999 11 8 999 11111111 8 777 5 66 11 8 11 0 1111111111 0 5 11 11 11 444 55 8 1111 88 33 33 5 0 777 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3 33 3 7777777777 0 666666 8 00000 000000 8 00 99 99999999 99 6 6 6 44 4444 6 6 99 999999 1111 99 5 6 22 6 888 6 0000 111 6 6 66666 77777 999 44444 0 4444 99 6 6 6 6 6 6 6 6 6 3333333 99 8 8 11 0 11 8 8 11 2222222 0 3 3 1 2222 0 9 2 000000000 9 33 222222222222222222222222222222222222222222222222222222222222 33 0 1111 0 3 0 2 777 3333333333 0 33 33 999999 3 3 5555555555555555 1 333 7 7 33 33 0 222222 0 0 4444 0 777 222222222222222222222 33333 4444444444444444 0 3333333333333333 55555555 0 0 0 33 3333333 33 55 2222222222222222222222222222 0 4444 8 8 8 99 8 8 8 2 1
lowQualScore : . . ................... ... . ..... .. ..... . . . ...... . . . .. . . . . ....... . ... ... ............. .. . ... .. ...... . . . . ..... . .. . . ....... ... . ... . .. . . . . ..... . ....... . ................ . . . . .... . . . . ... . .. . ...... .... .. .. . ... . ...... ... . .. .......... .. . . . . ... ......... .. ... .. . . . ........ . .. ......... . . ... . .... ... . . . ..... ............ ..... . ............................ .. ... . ......... ...... ....... . . . .................... . . . . ... .... .... .. . .. . . .... . ... . .... . . . . .... .. . . .... ........ . . ..... ... . ....... . ... . . ........ .. . ... ........ . ... . .. .. . .. . .......... . . .. .. .. ... .. . .... .. .. .. . . ... ........................................................................................... . .. . .......... . ...... . ..... ...... . .. .. ........ .. . . . .. .... . . .. ...... .... .. . . .. . ... . .... ... . . ..... ..... ... ..... . .... .. . . . . . . . . . ....... .. . . .. . .. . . .. ....... . . . . .... . . . ......... . .. ............................................................ .. . .... . . . . ... .......... . .. .. ...... . . ................ . ... . . .. .. . ...... . . .... . ... ..................... ..... ................ . ................ ........ . . . .. ....... .. .. ............................ . .... . . . .. . . . . .
lowQualScore : 0 0 4444444444444444444 444 0 99999 99 22222 0 0 0 000000 0 4 4 11 4 2 0 0 2222222 0 888 888 5555555555555 99 0 000 99 555555 0 0 0 7 77777 0 33 7 7 0000000 777 7 333 7 88 7 7 5 7 77777 7 7777777 7 2222222222222222 3 7 5 2 2222 3 7 7 7 888 7 22 7 222222 8888 22 22 8 000 0 222222 777 7 77 8888888888 00 0 0 0 0 000 000000000 00 888 00 6 0 8 00000000 8 00 888888888 0 0 000 0 0000 000 0 2 0 88888 222222222222 55555 0 5555555555555555555555555555 88 555 6 000000000 666666 0000000 0 0 0 66666666666666666666 0 0 0 0 000 0000 2222 00 0 00 0 8 0000 0 888 0 0000 8 6 7 7 5555 22 7 3 3333 88888888 7 7 77777 888 7 7777777 7 555 7 7 00000000 00 0 666 88888888 0 222 8 44 00 0 00 8 0000000000 8 8 00 00 00 000 88 0 0000 66 88 88 0 0 555 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2 88 2 2222222222 0 222222 0 88888 888888 0 77 22 33333333 22 7 7 7 55 2222 7 7 22 222222 7777 22 2 7 55 7 777 7 8888 777 7 7 77777 77777 555 00000 7 2222 22 7 7 7 7 7 7 7 7 7 5555555 22 0 0 00 8 00 0 0 00 0000000 7 3 3 0 7777 0 2 5 000000000 8 88 555555555555555555555555555555555555555555555555555555555555 88 0 2222 0 2 0 5 555 8888888888 0 88 88 333333 3 3 0000000000000000 0 333 3 3 88 88 0 222222 0 0 8888 0 000 222222222222222222222 55555 8888888888888888 0 8888888888888888 22222222 0 0 0 88 8888888 88 00 8888888888888888888888888888 0 8888 0 0 0 00 0 0 0 0 0
consensus : TTAAGGATGTT-CT-CTGGT-GAGTAT--G-A-----N-TTTTTTCAT--G-AAT--T--AAACTT--TTT-----AA-AT-AACCCAT-CTT--A-AACTCATT-CAT-CT-TGACCA--GAAAGGCAAATTCAAAC-A-CAA-------GA-A---AA---GG-------------TAT--GT-TAGTG-C-GG--AC---T--TTAAA-GAGTT-ACAGCCCCT-CAAAG-TTA----CCCCTTTGCT--GAA-AG-TTA---C---TTTTTT---C-TTTTGAAA---ATCA-CCAT--T-TTCCAC-AAGAAAA-CACAATA-----T-AAAACAAATA-------TTCAT-GACAGN---------AAT--AAT-TTCA-TTATCTTTTATTT----CA-TGAA-AA-TTAAT-CA--T-AA--TTTATAA-TT------TT-T--AT--AACT--TTTAC---A-TAA-TT---TTTTTTCAAA---AATT-CTAG-AA-------T--AATAAC--AGATT-ATCT-AG-CAT-TATTG-GG---------GGAA--AANA-TG--ACACAAA-TTTTAAGT---C----AAATTTT--GTC--------AA-AAAA-TTCA---AT-CTA----GC---AGAGTTCC-TGAATT-AAAC-T---TTTTGTG--A---AA----TTGCCAA---C-GCAG-ATT-------TGAA-A-CA--------TA--TT--TTT---GCTCATTTT---------GAATGA-----AAAAAA-------A-GTT-GG-GG----G-------TA-G-T-TGTGCA-TTGGGAAC-AAAGTTT---TG----AACCCA-TTTTGTG--T-CC--CACCC-CCTTCTC----ATTT-TTG-TCAT-AAATT----TCAACATC-AATT-ACAATAT-TATGA--T-TTGT-TAT----AAA-----T-ATATTT-TC-TTC-----AAT---TCATAT-TTA-------CAA-ATTTTAT-G-TATTTA-TT-TAATCATATAACCA-----AT--ACTG-TCT-TAAAAAGG--T-----AT-AAATAATATTG-ATA--TACAA-A--CAA---A-A----ATAATTTC--ATT--TATC--ACT---GAAGGAA-TAC-ATGGTGGAAAAC--AAA--TGCCAC-TAAA---TTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAATTTTTGTTT--GAATAGA-----A----AAA-AAGTA-CT---T-GAG----TTGTCCTT----A-GAAACC-AATTTTTAAAC--AG-T------CAA--C-TTCCAT-GC-ACCCACTTGGA----AGAGATGTG-TACTT-C--CT------GGT-A--AT--GATTTCCC-G--AAT-GAT-GGC-ACC----ATGA---AT-C-C-----ATG--A--TT--TATAACAATTCCCGT----G--GTT-A-CAAA-AT-GG-ATG-T-AT-CT-ACAA----A--GCAG--AACCGATAAG-GA-A--CAAATTAT--TGA-TCTAGTA-GCGC--AAAGAAATATA------AAAATCAACGAAATGA-TCT-TTNTCGTTTTTTTAG-CACGAACGCCGCGCCG---------TATATTCT--CT-------------AA------------CAT---------T-------T------------TTA--CCTCGG-GA----TT-CGTTTT-GATGAATAAA---TTC----------ATTGTT-TA--CGTTGGT--GATTTTTT-A----AAAA-CTCTGAT-ACTA-TTGAATTAC---TACCNT---TTGTATTCAAAAA--TG--ATGA-TTAAAA-A----AT-AA-TGC-A--TTGGACAT-CAGGGACT--ATAGAA-TCTA---TTAACCG---ANAGGCTTTC-CT-CGC----G----C---A--GGAT-CAGA--TC---TTG------GGTAT----C-G-ATAT-TT-AGTTT-G--TAGA-TT----TTTTTAAAAA--TAAAAC-TAC-TT---AAT-GG--C-ACC---------ACAA-ATTCAC--T-C-AGA-AC-TA--TATCAACA-GCCTT-GGG-TTCAGCCACTACGTNTGC
Reference ( family-2905 ) : TTAAGGATGTT-CT-CTGGT-GAGTAT--G-A-----T-TTTTTTCAT--G-AAT--T--AAACTT--TTT-----AA-AT-AACCCAT-CTT--A-AACTCATT-CAT-CT-TGACCA--GAAAGGCAAATTCAAAC-A-CAA-------GA-A---AA---GG-------------TAT--GT-TAGTG-C-GG--AC---T--TTAAA-GAGTT-ACAGCCCCT-CAAAG-TTA----CCCCTTTGCT--GAA-AG-TTA---C---TTTTTT---C-TTTTGAAA---ATCA-CCAT--T-TTCCAC-AAGAAAA-CACAATA-----T-AAAACAAATA-------TTCAT-GACAGN---------AAT--AAT-TTCA-TTATCTTTTATTT----CA-TGAA-AA-TTAAT-CA--T-AA--TTTATAA-TT------TT-T--AT--AACT--TTTAC---A-TAA-TT---TTTTTTCAAA---AATT-CTAG-AA-------T--AATAAC--AGATT-ATCT-AG-CAT-TATTG-GG---------GGAA--AANA-TG--ACACAAA-TTTTAAGT---C----AAATTTT--GTC--------AA-AAAA-TTCA---AT-CTA----GC---AGAGTTCC-TGAATT-AAAC-T---TTTTGTG--A---AA----TTGCCAA---C-GCAG-ATT-------TGAA-A-CA--------TA--TT--TTT---GCTCATTTT---------GAATGA-----AAAAAA-------A-GTT-GG-GG----G-------TA-G-T-TGTGCA-TTGGGAAC-AAAGTTT---TG----AACCCA-TTTTGTG--T-CC--CACCC-CCTTCTC----ATTT-TTG-TCAT-AAATT----TCAACATC-AATT-ACAATAT-TATGA--T-TTGT-TAT----AAA-----T-ATATTT-TC-TTC-----AAT---TCATAT-TTA-------CAA-ATTTTAT-G-TATTTA-TT-TAATCATATAACCA-----AT--ACTG-TCT-TAAAAAGG--T-----AT-AAATAATATTG-ATA--TACAA-A--CAA---A-A----ATAATTTC--ATT--TATC--ACT---GAAGGAA-TAC-ATGGTGGAAAAC--AAA--TGCCAC-TAAA---TTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAATTTTTGTTT--GAATAGA-----A----AAA-AAGTA-CT---T-GAG----TTGTCCTT----A-GAAACC-AATTTTTAAAC--AG-T------CAA--C-TTCCAT-GC-ACCCACTTGGA----AGAGATGTG-TACTT-C--CT------GGT-A--AT--GATTTCCC-G--AAT-GAT-GGC-ACC----ATGA---AT-C-C-----ATG--A--TT--TATAACAATTCCCGT----G--GTT-A-CAAA-AT-GG-ATG-T-AT-CT-ACAA----A--GCAG--AACCGATAAG-GA-A--CAAATTAT--TGA-TCTAGTA-GCGC--AAAGAAATATA------AAAATCAACGAAATGA-TCT-TTNTCGTTTTTTTAG-CACGAACGCCGCGCCG---------TATATTCT--CT-------------AA------------CAT---------T-------T------------TTA--CCTCGG-GA----TT-CGTTTT-GATGAATAAA---TTC----------ATTGTT-TA--CGTTGGT--GATTTTTT-A----AAAA-CTCTGAT-ACTA-TTGAATTAC---TACCNT---TTGTATTCAAAAA--TG--ATGA-TTAAAA-A----AT-AA-TGC-A--TTGGACAT-CAGGGACT--ATAGAA-TCTA---TTAACCG---ANAGGCTTTC-CT-CGC----G----C---A--GGAT-CAGA--TC---TTG------GGTAT----C-G-ATAT-TT-AGTTT-G--TAGA-TT----TTTTTAAAAA--TAAAAC-TAC-TT---AAT-GG--C-ACC---------ACAA-ATTCAC--T-C-AGA-AC-TA--TATCAACA-GCCTT-GGG-TTCAGCCACTACGTNTGC
gi|1 : TTAAGG-TGTTTCTGTTGGT-GAG-ATTGG-ACCTCCT-CTCTTTCATTGG-AAT--TTAAAACTT--TTTTTTTAAACAT-AACCCATTCTT--G-AACTCATTTCAT-CT-TGACCAAAGAAAGGTTAATTCCAAA-A-CAACTGAAAGGA-A---AAAGGGG-------------TAT--GT-T-GTGACAGG--AC---T--TTAAA-GAGTT-ACAGCCCAT-CAAGT-TTGATATCCCTTTTGCTCTGAA-AG-TTAAAAC---TTTTTTTGTC-GTTTGAAAGGGATCA-CCAT--T-TTCCACCAAGTAAA-CACAATAGAAATT-AAAACAAATA-------TTCATTGACAGCCTTTTAGAGAATTAAAT-CTCA-TTATCTTTTATTT----CAATGAA-AAATTAATTCGATT-AA--TTTATAA-TT------TTTT--AT--AACT--TTTAC---A-TAATTT---TTTTTTCAAATTTATTT-CTAGAAA-------TAGAATAACG-AGATT-ATCTCAG-CATATATTA-GGAGCTTGGACGAAA--AAAA-TG--AC-CAAATTTTTATGT---C----AAATTTTTGATC--------AAGAAAA-TTCA---ATATTATTAGGCGGAAGAGTCCT-TGAATTAAAAC-TTGGTTTCGTG--G---AA----ATGCCAA---TGGCAG-ATT-------CGAA-A-CAACTTAGGTTA--CTACTTTGTGGCTCATTTTTGATTTAGAGGGTGAAAAGGAAAAAA-------A-GTTCGGTGG----GGTCATATTA-GTT-TGTGCATTTGGGAAC-AAAGTTTTTATGGGATAACCTATTTTTGTG--T-CCCGCACCCGCCTTCTC----ATTTCTTGATCAT-AAATT----TCAACATCGGATT-ACAA-ATATATGACTT-TTG--TATTA--AAA-----TGGTATTC-TT-TCCTGGTGAAT---TTCTAA-TTATTTCAGGCAA-ATTTTATGG-TATTTATTT-TAATCATATAACTACTTACAT--GTTC-TCT-TAAAAAGG--------AT-AAATAATTGTG--TA--AACAATACTCAATTCA-ATGATATAAATTC--ATT--TATC--ACTTTCGA--GAA-TAC-ATGTTG--AAACTAAAA--TGCCACTTAAAGTTTTAA
gi|1 : CCAAATTTTTGTAT--GA-TAGA-----ATATCAAA-CGGTA-TTATTTAGAG----TTGCGCTTTATTA-GACACC-AATTTTTAAACTCAG-T------CAAACC-TTCCAT-GC-ACCACCTTAGAGTGAAGAGATGTGATACTTTC--CT------GGT-ATGATTAGATTTCCG-GT-AAT-GAT-G-C-ACCGGGGATGA---AT-C-CGGGTAATGTTA--TTATCATAACAATTCCCGTTCGTG--GTTGA-CAAA-ATTGG-ATGAT-GTTCT-ACAA----AAAGCAG--ACCGGATAAA-GACA--CAAATTATGTCGA-TCTGGTA-GCGTCAAAAGAAATATA------AAAATCAACAAAATGAATCT-TTTTTGTTTTTTTAGACACGA-CACCGCGCCA---------TATTTTCTTTCT-------------AAAGAATGCCGATACAT---------TAAACTATT------------TTAGCCTTCTG-GA----TT-CGTTTTTGCT--ATGAA---CTCCATAATGGCAATTATT-TA--CGTTGGT--GATTTTTTTA----AAAA-CTCTGATTACTAGTT--ATTAC-----CCTT---TTGTATTCAAAAA--TGTTATGA-TTAAGA-A----AT-AA-TGC-ACATTGGACATTCAGGGACT--ATAGAA-TCTA---ATTACCG------GGTCTTCGCTGCGC----GGCTAC---A--GGAT-CAGA--T-----TG------GGTAT----C-GCATAT-TT-AGTTTTG--TAGT-TTAGATTTTTTAAAAA--TAAAAC-TAC-TT---AATAGA--CAACT---------ACAATATTCA-----C-AGA-ACTTAT-TATCAACA-GCCTT---G-TTCAGACACTATGcttattgtccaactcttccatgccactgtgacattgacctttgatcttttactgatctctcaaaaatatcacaacaagcgatgttcccttctttagtgtcaatatcccttatgtccaaatttttgtatgatagaatatcaaacggtattatttagagttgcgctttattagacaccaatttttaaactcagtcaaaccttccatgcaccaccttagagtgaagagatgtgatactttcctggtatgattagatttccggtaatgatgcaccggggatgaatccgggtaatgttattatcataacaattcccgttcgtggttgacaaaattggatgatgttctacaaaaagcagaccggataaagacacaaattatgtcgatctggtagcgtcaaaagaaatataaaaatcaacaaaatgaatcttttttgtttttttagacacgacaccgcgccatattttctttctaaagaatgccgatacattaaactattttagccttctggattcgtttttgctatgaactccataatggcaattatttacgttggtgatttttttaaaaactctgattactagttattacccttttgtattcaaaaatgttatgattaagaaataatgcacattggacattcagggactatagaatctaattaccgggtcttcgctgcgcggctacaggatcagattgggtatcgcatatttagttttgtagtttagattttttaaaaataaaactacttaatagacaactacaatattcacagaacttattatcaacagccttgttcagacactatg
gi|10 : ttaaggtgtttctgttggtgagattggacctcctctctttcattggaatttaaaactttttttttaaacataacccattcttgaactcatttcatcttgaccaaagaaaggttaattccaaaacaactgaaaggaaaaaggggtatgttgtgacaggactttaaagagttacagcccatcaagtttgatatcccttttgctctgaaagttaaaactttttttgtcgtttgaaagggatcaccattttccaccaagtaaacacaatagaaattaaaacaaatattcattgacagccttttagagaattaaatctcattatcttttatttcaatgaaaaattaattcgattaatttataattttttataacttttacataatttttttttcaaatttatttctagaaatagaataacgagattatctcagcatatattaggagcttggacgaaaaaaatgaccaaatttttatgtcaaatttttgatcaagaaaattcaatattattaggcggaagagtccttgaattaaaacttggtttcgtggaaatgccaatggcagattcgaaacaacttaggttactactttgtggctcatttttgatttagagggtgaaaaggaaaaaaagttcggtggggtcatattagtttgtgcatttgggaacaaagtttttatgggataacctatttttgtgtcccgcacccgccttctcatttcttgatcataaatttcaacatcggattacaaatatatgacttttgtattaaaatggtattctttcctggtgaatttctaattatttcaggcaaattttatggtatttattttaatcatataactacttacatgttctcttaaaaaggataaataattgtgtaaacaatactcaattcaatgatataaattcatttatcactttcgagaatacatgttgaaactaaaatgccacttaaagttttaacttattgtccaactcttccatgccactgtgacattgacctttgatcttttactgatctctcaaaaatatcacaacaagcgatgttcccttctttagtgtcaatatcccttatgtCTCATTTT---------TAATGA-----AAAAAA-------ATGTC-AG-GG----G-------TA-G-T--GTGCG-TTGG-AAC-AAAGTTT---TG----AACC-A-TTTTGAG--TGCC--CATCC-CCTTTTC----ATTT-T-G-TCAT-AAATT----TCAAC-TC-AATA-ACAATAT-T-CAA--T-TTGT-TAT----AAAA----T-GCATAT-TC-TTC-----AAT---TCATAT-TTA-------CAA-ATCATAT-G-TATTTA-TT-CCATCGTATAA
gi|11 : tcTTAAGGATGTT-CT-CTGGT-G-GTAT--T-A-----T-TTTTTTAAA--GTAAT--A--AAAAAT--AAT-----AA--T-AACCCAT-TTT--A-A-CTTATT-CAT-CT-TGATCA--GAAAGACAA-TTTAAAC-A-CAC-------GA-A---TA---AG-------------TAT--AT-CAGTG-T-GGT-ACATGTAGTCAAA-GTGTT-ACAGCTCCT-GAAAG-TTA----GCCCTTTGCT--GAA-AG-TTA---TATATATTTT---C-TTTgac
gi|12 : gTTTTAA-C--AG-C------CAA--C-TTTCAT-GC-GACCATAATGA----AGATATATC-CACTT-C--CT------GGT-AT-AT---ATT--CT-GT-TAT-GAT-GAC-ACT----ATGACTCAT-CGC-----ATT--T--TT--TGT--------CTGT----G--ATT-A-CAAA-TT-AA-ATG-T-AG-GT-ACAAAACGA--GCAG--AAACG
gi|13 : agTTAAGGATGTT-CT-CTGCT-T-TTAT--GAA-----G-TTTTTTCA---A-AATAAT--AAACTT--TTT-----AA-AT-AACCCA---TT--ATAACTCATT-CAT-CT-TCACCA--GGAAGGC-AATTTAAAC-A-CAA-------GAGA---AG---GG-------------TGC--AT-TGGTG-T-CG--AC---T--TC-CA-GAGTT-ACAGGCCCT-ggaaacag
gi|14 : TTGAAA---ATCA-CCAT--T-TTCCAC-AAGAAA--CACAATG-----T-AAACCAAATA-------ATC---------------------------TCCA-TTATCTTTTCGTC----CA-TGAA-AA-TCAGT-CA--T-AA--TTTATAA-TT------TT-G--AT--AACA--TTTACCCAA-AAA--------TGTTCAAC---AATT-CTTT-AA-------T--AATA
gi|15 : c---AATT-CTAG-AAATACACGT--AATAAC--TGATT-ATCT-AG-CAT-TATT--GG---------AGAA--AAC--TG--GCACAAA-TGTTAAGT---C----ATATTTT--GTC---------A-AAAT-TTCA---AT-CTA----GC---t
gi|16 : tttgtcAAGGATGTT-CT-CTGGT-GAG-AT--G-A-----C-TTTTTTCATTCG--AT--T--AAACTT--TTTAAA--AA-AT-AACCCAT-CTTA-A-AACTCATT-CAT-CT-TGACCA--G--AGGC-AATTCAAA
gi|17 : ta-CACGACCGCCGCGCCA---------TAT-TTCT--CT-------------AA-------------AT---------T-------TGATAGATCTATTTTA--CCCCGG-GA----TT-CGTTTT-GATGACTAAA---TTC----------ATTGTT-TA--CGTTGGT--GATTTTTT-
gi|18 : AT-CT-TGATCA--GAAAGACAA-TTTAAAC-A-CAA-------GT-A---AA---GGATACATGTATATATATAAGT-AAGTG-T-GG--AC---T--TTAAAAGAGTT-ACCGCCCCT-CAAAG-
gi|2 : TTAAGGATGTT-CT-CTGGTTGAG-AT--G-A-----AATTTTTTCAT--G-AAT--TTTAAACTT--TTTT----AA-AT-AACCCAT-CTT--A-A-CTCATT-CAT-CTATGACCA--GAAAGGCCAATTCAAAC-A-CAA-------GA-A---AAA--GG-------------TAT--GT-TAGTG-C-GG--AC---T--TTAAA-GAGTT-ACAGCCCCT-CAAAG-TTA-----CCCTTTGCT--GAA-AG--TA---C---TTTTTT---CTTTTTAAAA---ATCA-CCATC-T-TTCCAC-AAG--AA-CACAATA-----T-AAAACAAATA-------TTCAT-GACAGA---------A----AAT-CTCA-TTATC--TTA-TT----CA-TGAA-AA-TTAAT-CA--TGAA--TTTATAATTT------TT-T--ATTAAACT--TTTAC---ATTAA------TTTTTTCAAA---AATT-CTAA-AA-------T--AATAAC--AGATT-ATCT-AG-CAT-TATTG-GG---------GGAACGAAAA-CGACACACAAA-TT---ACT---CGCTAAAATTTT--GTCCACGCAAAAA-AAAA-ATAAAACAT-ATA----GC---AGAGTTCCTTGAATT-AAAC-T---TTTTTTG--ATCGAACACTTTGCCAAAGCC-ACAG-ATTACCATCATAAA-A-CA--------TATCTT--CTT---GCTCATTTT---------GAATGA-----AAAAAAAAAACACA-GTT-GA-GGCCAAG-------CAGG-TATGTGCA-TT-GGAAC-AAAGATT---TG----AA-CCA--TTTGTGA-T-CC--CACCC-CCCTCTCTCCAATCT-TTG-TCATAAAATTTATATCAACATC-AATTAACAATAA-TATGA--TGCTGTCCATACTAAAA-----TGATATTTCTCACTC-----AATCA-TCATATAATA-------CAA-ATTTAA----TATTTA-TTATAATCATATAACC------AT--ACTGATC----AAAAGG--TAAAAAAT-AAA-AATATTGAATACTTACAA-A--CAA---ATA----ATAA-TTCAAATTAATATC--ACT---GAAGGAA-TACAATAGTGG-AAAC--AAATTTG-CAC-AAAC---TTAA
gi|2 : CCAAATTTTTGTTTCCGAATAGATAACAA----AAA-AAGTACCT---T-GAG-----TGTCCTT----C-GAACAC-AATCCTTTAAC--AG-TAATAACCAA--CATTCCATCGCAAAACAC--GGA----AGAGA-----TACTT-CAACTGACCAAGGT-A--AT--GATTTCAC-GGAAAT-GATCGGCAACCA---ATGA---AT-C-C-----ATG--ATCTT--TATAACCATTCCTGT----GCCGTT-A-CAAACAT-GGAATG-TGAT-CCAACAA----G--ACAGAAAACCGATAAGAGA-AACCAAATTAT--TGA-TCTAGTAGGCGC--AAAGAAATATACATGTTAAAATCAACGAAATGA-TCTGTTGTCATTT-----G-CACGAACGCC-CACCGCCCAACCAATATATTCT--CTAAACCTGACGACCAA------------TATCAAACTCTAT-------T------------TTA--CCTCGGCGAAACCTTACG-TTT-GATGAATAAAACTTTC----------ATGATTATACCCGCTTGTAGGAACTTTT-ATACCAAAACCTCTGAT-ATTA---GAATTACACATACCATATATTG-ATTCAAAAACCTG--ATGA-TTACAA-ATACCATAAA-TGCAA--TTGAACAT-CAAGGACTCAATAGAA-AACA---TCAACTA---CCGGGCTTCC-TG-CGCTCAGG----C---AATGGATACAGAATCC---TTGAGAAGAGGTATCAGAC-A-ATAT-TTCAGTTT-G--TAGA-------TCTTTAGAAATCTAAAACTTACGTTCCAAAT-AGAAC-ACCAATCCTACAACAA-ATTCACAAT-CAAGA-AC-TACCCATCAACA-G-CTT-GGGTTTCAGCCcattgtcccaatttcatgcccctgtgacattgacctttgaactttctgacatcccataaatattaacaagtgacaatgtcccttctctagtgcgtatcgatatgtctccaaatttttgtttccgaatagataacaaaaaaagtaccttgagtgtccttcgaacacaatcctttaacagtaataaccaacattccatcgcaaaacacggaagagatacttcaactgaccaaggtaatgatttcacggaaatgatcggcaaccaatgaatccatgatctttataaccattcctgtgccgttacaaacatggaatgtgatccaacaagacagaaaaccgataagagaaaccaaattattgatctagtaggcgcaaagaaatatacatgttaaaatcaacgaaatgatctgttgtcatttgcacgaacgcccaccgcccaaccaatatattctctaaacctgacgaccaatatcaaactctattttacctcggcgaaaccttacgtttgatgaataaaactttcatgattatacccgcttgtaggaacttttataccaaaacctctgatattagaattacacataccatatattgattcaaaaacctgatgattacaaataccataaatgcaattgaacatcaaggactcaatagaaaacatcaactaccgggcttcctgcgctcaggcaatggatacagaatccttgagaagaggtatcagacaatatttcagtttgtagatctttagaaatctaaaacttacgttccaaatagaacaccaatcctacaacaaattcacaatcaagaactacccatcaacagcttgggtttcagcctaaccggccataa
gi|20 : ttaaggatgttctctggttgagatgaaattttttcatgaattttaaacttttttaaataacccatcttaactcattcatctatgaccagaaaggccaattcaaacacaagaaaaaggtatgttagtgcggactttaaagagttacagcccctcaaagttaccctttgctgaaagtacttttttctttttaaaaatcaccatctttccacaagaacacaatataaaacaaatattcatgacagaaaatctcattatcttattcatgaaaattaatcatgaatttataattttttattaaacttttacattaattttttcaaaaattctaaaataataacagattatctagcattattgggggaacgaaaacgacacacaaattactcgctaaaattttgtccacgcaaaaaaaaaataaaacatatagcagagttccttgaattaaactttttttgatcgaacactttgccaaagccacagattaccatcataaaacatatcttcttgctcattttgaatgaaaaaaaaaaacacagttgaggccaagcaggtatgtgcattggaacaaagatttgaaccatttgtgatcccacccccctctctccaatctttgtcataaaatttatatcaacatcaattaacaataatatgatgctgtccatactaaaatgatatttctcactcaatcatcatataatacaaatttaatatttattataatcatataaccatactgatcaaaaggtaaaaaataaaaatattgaatacttacaaacaaataataattcaaattaatatcactgaaggaatacaatagtggaaacaaatttgcacaaacttaacattgtcccaatttcatgcccctgtgacattgacctttgaactttctgacatcccataaatattaacaagtgacaatgtcccttctctagtgcgtatcgatatgtctTTCAC--T-C-AGA-AC-TA--TATCAACA-GCCTTGGGG-TTCAGCCATTA-GTATGCtaaccggccataa
gi|3 : TTAAGGATGTT-CT-CTGGT-----------------T-TTTTTTCTT--G-AAT--T--AAACTT--TTT-----GA-AT-AACCCAT-TTT--A-AACTCATT-CAT-CT-TGACCA--GAACGGCAAATTCAAAC-A-CAA-------GA-A---AA---AG-------------TAT--GT-TAGTG-C-GG--AC---C--TTAAA-GAGTT-ACAGCCCCT-GAAAG-TTA----CCCCTTTGCT--GAA-AG-TTA---C---TTTTTT---C-TTTTAAAA---CTTA-CCAT--T-TTCCAC-AAGAAAA-CACAATA-----T-AAAACAAATA-------TTCAT-GACA-T---------AAT--AAT-TTCA-TTATCTTTTATTT----CA-TGAA-AA-TTAAT-CA--T-AA--TTTATAA--T------TT-T--AT--AACT--TTT-C---A-TAA-TT---TTTTTTCAAA---AATT-CTAG--A-------T--AATAAC--AGATT-ATAT-AG-CAT-TAT---GG---------GGAA--AATA-TG--ACCCAAA-TTTTAAGT---C----AAA-TTT--GTC--------AA-AAAA-TCCA---AT-CTA----GCA--AGAGTTTC-TGAATT-AAAC-----TTTTGTG--A---AA----TTGCTAC---T-GTAG-ATT-------TGAA-ATCA--------TA--TT--TTT---GCTCA-TTT---------GAATG------AAAAAA-------A-GTT-GG-GG----G-------TA-G---TGTGCA-TTGGGAAC-AAAGTTT---TG----AACCCA-TTTT-TG--T-CC--CACCC-CCTTC-C----ATCT-TTG-TCAT-AAATT----TC-ACATC-AATT-ACAATAT-GATGA--T-TTGT-TAT----AAA-----T--TATTT-CC-TTC-----AAT---TCATAT-TTA-------CAA-ATTTTAT-G-TATTTA-TC-TAATTATATAACCA-----ATCAACTG-TC--TAAAAAGG--T-----AT-AAATAAT-TTG--TA--TATGA-A--CAA---A-A----TTAATTCC--ATT--TATC--ACT---GAA--AATTAC-GTGGTGGAAAAC--AAG--TG--AC-TAAA---TTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAATTTTGTTTT--GAATAGA-----A----AAACAAGTA-CT---T-GAG----TTATCCTT----A-AAAACC-AATTTTT-AAC--AGTT------CAA--C-TTCCAT-GC-ACCCA-TTGGA----AGAG-TGTG-TACTT-C--CT------GGT----AT--GGTTT-TC-G--AAA-GAT--GC-ACC----ATG----AT-C-C-----ATG--A--TT--AAT-AC-ATTCCC-T----G--GTT-A-CAAA-AT-GG-ATG-T-AT-CT-ACAA----A--GCAC--AACCGATAAG-GA-A--CAAATT-T--TGA-TCTAGTA-GCGC--AAAGAAATATA------AAAATCAACAAAGTGA-TCC-TTATCG---TTTTAG-CATGAACGCCGCGCCG---------CATATTCT--CT-------------AA------------CAT---------T-------T------------TTA--CCTCGG-GA----TT-CATTTT-GATGAATAAA---TTC----------ATTGTT-TA--CATTGGT--GATTTTTT-A----AAAA-CTCTGAT-AC---TTGA--------TACCCT---TTTTATTC-AAAA--TG--ATGAGTTAAAA-A----AT-AATTGC-A--CTGGACAT-CAGGGACT------AA-T-TA---TT--CCG---AAAGGCTTTC-CT-CGC----G----C---A--GGAT-CAGA--TCAATTTG------GGGAT----C-G-ATAT-TT-AGTTT-G--TAGATTT----TTTTTAAATA--TAAAA--TACTTT---AAT-GG--C-ACCTT-------ACAA-ATTCAC--T-C-AGT-AC-TA--TATCAACAGGCCTT-GGG-TTCAGCCACTACGTTTGC
gi|4 : TTAAGGATGTT-CT-TTGGT-GAG-AT--G-A-----AATTTTTTCATT-G-AAT--T--AAACTTCCTTT-----GA-ATTAACCCAT-CTCTGG-AACTCATT-CATTCT-TGACCA--GAAAGGCAATTCCAAACCATCAA-------GA-ATAAGA---GG-------------TAT--GTGTAGTG-C-GGGGAC---TG-TTAAAAGAGTTGACAGTCCCTTCAAGGGTTA----CCC-TTTGCCTGGAATAGCTTA---C---TTTTT----C-TTTGGATAT--ATCAGCCATATTATTCCAC-AAGAAAATCA-AATA-----TCAAAACAAATACCACCCATTCAT-GACAGT---------AAT--AATCTTCAATTATCTAGTATCTTCCTCACTGAATAA-TTAAT-C---T-AACTTTTATAA-TTATGATATT-T--AT--AGCTGCTTTAC---A-TTA-TTGACTTTTTCCAAA---AAATACGAC-AA-------T--AATAACTCAGATTTATCT-AGGCAT-TATTGTGG---------GGAA--AACAATG--ACACAAA-TTTTAAGTTGTC----AAATTTT--GGC--------AA-AAAAGTTCA---AT-CTA----GC---AGAGTTCCGTG-ATT-AAACTT---TTTTGTGGAA---AA----TTGATAAT--C-GCAGAATT-------TGAATG-AA--------T---TT--TTT---GCTCA--TT---------GAATG-------AAAAA-------A-GTT-AG-GG----A-------TA-G---CGTGCA-TT-GGAACAAAAGGTT---TG----AACCAT-TTTTGTGTCT-CC--CACCC-CTTTCTC----ATTT-TT--TCAT-AAATT----TCAAC-TC-AAAT-ACAATA--TATGA--T-TTGTATAT----AAA-----T-ATATTT-TC-TTC-----AATTTATCATAT-TTA-------CAATTTTTTAT-GATATTTA-TT-TAATCATATA---A-----AT--ACTG-TCT-TAAAAAGGTCT-----ATCAAAT-AT-TTGTATA--TACAA-A--CAA---T-A----ATAA-TTA--ATT--TATTAAACT---GAAGAAA-TAC-A--GTGAAA
gi|5 : AAGGATGTT-CT-CTGGT-G-GTGT--G-AA----T-TTTTTTCAAA-G-AAA--T--AAACTC--TTT-----GA-AT-AACGCAT-TTT--A-A-CTCATT-CAT-CT-TGACCA--GAAAGGCAA-TTTAAAA-A-CAA--------A-A---AA---GG-------------TAT--GT-CAGTA-T-GA--AC---T--TTAAA-GAGAT-ACAGCTCCT-CAAAG-TTT----CCCCTTTGCT--GAA-AG-TTA---C---TTTTTT---T-TTTCGAAA---ATCA-CCAT--T-TTCTAC-AA-AAAA-CACAATA-----T-AAAACAAATA-------TT-AT-GACA-A---------AAT--AATATTCA-TTATCATCTATTT----CA-TGAA-AA-TTAAT-CA--T-AA--CGTATAA-TT------TT-TACAT--AAAT--TTT
gi|6 : cCCAA--TTTTGTTT--GAATAGA-----A----TAA-AAGTA--T---T-GAGGGGGCTGTCCTT----AAGAAACCCAATTTTGAAAC--AG-T------CAA--C-TTCTAT-GC-ACCCACTTGGA----AGAGATGTG-CACTT-C--CT------GGTAA--AT--GATTTTCCGG--AATGGAT-GGC-ACC----ATGA---ATCC-C-----ATG--C--TT--CTTAGAATTTTCTGT----G--GTT-ACCAAA-AT-GG-ATG-T-AT-CT-ACAAC---A--GC-G--AACCGATAAC-AA-A---AAATTAA--TGAGTCTAGTA-GCGC--AAAGAAgtcaaga
gi|7 : tattctattttaatctTC-AATT-ACAATAT----GA--T-TTGT-TAT----AAAATGCAT-ATATAT-TC-TTC-----AAT---TCATAT-TTA-------AAA-ATTTTAT-G-TATTTA-TT-TTATCACA-AA--A-----AT--ACTG-TCTAAAAAAAAG--T-----AT-AA--AATATTG--TA--CACAA-A--C-------A----AT-ATTTC--ATT--TATC--ACT---GAA-GAA-TAC-AT-GTGG-AAAC--ATA--TGCCAC-TAAA---TTAA
gi|8 : GTA-CT---T-GAG----TTATCATT----A-GAAACC-AATTTT--AAC--AG-T------CAA--C-TTCCAT-GC-ACCCACTTGGA----AGATATGTG-TACTT-C--CT------GGT-A---T--GATTTCCC-G--AAT-GAT-GAC-ACC----ATGA---AT-C-C-----ATA--A--TT--TATAACATTCCCTGT----G--GTT-A-CAAA-AT-GG-ATG-T-AT-CT-ACAA----A--GCAG--AACCGATAAG-AA-A--CAAATCAT--TGA-TCTAGTA-GCGC--AAAGAAACAT-------AAAATCAACcattgtccaattccatgcactgtgacattgacctttgaccttctgactccaaaattcactggtattaagccaatgcc
gi|9 : tcttatgtccaaatttggtttAAA--TG--ATGA-TTAAAAAA----AT-AA-TGC-A--TTGGACAT-CAGGGACT--ATAGAATTCTAAATTTAGCCGAGAAGAAGCTTTC-CT--GC----G----CTGGA--TGAT-CAGA--T----TGG------GGTAT----CAG-ATATGTT-AGTTT-GGTTAGA--T----TTTTTAAAAA--TAAAA--TAC-TT---AA--------A-----------ACAA-AATCAC--TCC-AGACAC-TA--TATCAACA-TCTTT-GGG-TTCAGC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TAATGACCTTTTAAACCTAGGAATGACATTTACAGTGCTTATATACACAGGCACTTGACGTTTTAAATATATTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33333333333333 11111 222222 11111 22222 111111 1 1111111 111 2222222222222 11 111111 1 11111 11 1111111 111 111 11 11111 2222222 4444444444444444 1 1111 1 111 111111 1111 111 333333 111 2222222222 11 333333333 11 11 22222222 11 222222222 111 1111 222 2 1 33333 222222222222 33333 1 4444444444444444444444444444 11 111 1 333333333 333333 2222222 44444444444444444444 1 111 1111 1111 11 11 1111 1111 1 1111 1 2222 33333333 11111 222 2222222 22222222 11 111 33333333 1 33 11 11 3333333333 1 11 11 11 111 11 1111 11 11 11 1 1 111 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 3333333333 1 111111 22222 222222 11 11111111 1111 111111 2222 22 2222 111 11111 11111 11111 1111 2222222 11 11 11 3333333 1 1 1111 1 444444444 11 888888888888888888888888888888888888888888888888888888888888 11 1 2222 1 1 111 4444444444 1 11 11 222222 1 1 6666666666666666 222 11 11 1 222222 1 1 1111 1 111 333333333333333333333 11111 4444444444444444 1 5555555555555555 22222222 1 1 1 11 4444444 11 22 8888888888888888888888888888 1 1111 11 1
lowQualScore : 5 5 44444444444444 22222 333333 5 44444 66 66666 5 5 5 222222 5 4 4 66 7 0 5 5 6666666 5 888 333 7777777777777 66 5 888 11 333333 0 5 5 5 66666 1 88 6 6 6666666 111 6 888 6 55 6 6 3 6 66666 6 1111111 6 7777777777777777 3 6 3 3 4444 3 6 6 6 000 6 99 6 999999 0000 99 99 0 444 8 333333 111 6 77 1111111111 99 8 8 8 8 0 8 222222222 3 11 999 11 5 8 0 11111111 0 11 999999999 8 8 444 8 7777 222 0 3 0 00000 999999999999 55555 0 9999999999999999999999999999 33 777 0 222222222 000000 6666666 8 8 8 99999999999999999999 8 0 8 1 444 7777 3333 99 8 11 8 0 7777 8 888 8 7777 0 0 6 6 6666 99 6 3 3333 11111111 6 6 66666 000 6 1111111 6 777 6 6 99999999 11 8 999 11111111 8 777 5 66 11 8 11 0 1111111111 0 5 11 11 11 444 55 8 1111 88 33 33 5 0 777 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3 33 3 7777777777 0 666666 8 00000 000000 8 00 99 99999999 99 6 6 6 44 4444 6 6 99 999999 1111 99 5 6 22 6 888 6 0000 111 6 6 66666 77777 999 44444 0 4444 99 6 6 6 6 6 6 6 6 6 3333333 99 8 8 11 0 11 8 8 11 2222222 0 3 3 1 2222 0 9 2 000000000 9 33 222222222222222222222222222222222222222222222222222222222222 33 0 1111 0 3 0 2 777 3333333333 0 33 33 999999 3 3 5555555555555555 1 333 7 7 33 33 0 222222 0 0 4444 0 777 222222222222222222222 33333 4444444444444444 0 3333333333333333 55555555 0 0 0 33 3333333 33 55 2222222222222222222222222222 0 4444 8 8 8 99 8 8 8 2 1
lowQualScore : . . .............. ..... ...... . ..... .. ..... . . . ...... . . . .. . . . . ....... . ... ... ............. .. . ... .. ...... . . . . ..... . .. . . ....... ... . ... . .. . . . . ..... . ....... . ................ . . . . .... . . . . ... . .. . ...... .... .. .. . ... . ...... ... . .. .......... .. . . . . . . ......... . .. ... .. . . . ........ . .. ......... . . ... . .... ... . . . ..... ............ ..... . ............................ .. ... . ......... ...... ....... . . . .................... . . . . ... .... .... .. . .. . . .... . ... . .... . . . . .... .. . . .... ........ . . ..... ... . ....... . ... . . ........ .. . ... ........ . ... . .. .. . .. . .......... . . .. .. .. ... .. . .... .. .. .. . . ... ........................................................................................... . .. . .......... . ...... . ..... ...... . .. .. ........ .. . . . .. .... . . .. ...... .... .. . . .. . ... . .... ... . . ..... ..... ... ..... . .... .. . . . . . . . . . ....... .. . . .. . .. . . .. ....... . . . . .... . . . ......... . .. ............................................................ .. . .... . . . . ... .......... . .. .. ...... . . ................ . ... . . .. .. . ...... . . .... . ... ..................... ..... ................ . ................ ........ . . . .. ....... .. .. ............................ . .... . . . .. . . . . .
lowQualScore : 0 0 55555555555555 55555 555555 0 99999 99 22222 0 0 0 000000 0 4 4 11 4 2 0 0 2222222 0 888 888 5555555555555 99 0 000 99 555555 0 0 0 7 77777 0 33 7 7 0000000 777 7 333 7 88 7 7 5 7 77777 7 7777777 7 2222222222222222 3 7 5 2 2222 3 7 7 7 888 7 22 7 222222 8888 22 22 8 000 0 222222 777 7 77 8888888888 00 0 0 0 0 8 0 000000000 2 00 888 00 6 0 8 00000000 8 00 888888888 0 0 000 0 0000 000 0 2 0 88888 222222222222 55555 0 5555555555555555555555555555 88 555 6 000000000 666666 0000000 0 0 0 66666666666666666666 0 0 0 0 000 0000 2222 00 0 00 0 8 0000 0 888 0 0000 8 6 7 7 5555 22 7 3 3333 88888888 7 7 77777 888 7 7777777 7 555 7 7 00000000 00 0 666 88888888 0 222 8 44 00 0 00 8 0000000000 8 8 00 00 00 000 88 0 0000 66 88 88 0 0 555 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2 88 2 2222222222 0 222222 0 88888 888888 0 77 22 33333333 22 7 7 7 55 2222 7 7 22 222222 7777 22 2 7 55 7 777 7 8888 777 7 7 77777 77777 555 00000 7 2222 22 7 7 7 7 7 7 7 7 7 5555555 22 0 0 00 8 00 0 0 00 0000000 7 3 3 0 7777 0 2 5 000000000 8 88 555555555555555555555555555555555555555555555555555555555555 88 0 2222 0 2 0 5 555 8888888888 0 88 88 333333 3 3 0000000000000000 0 333 3 3 88 88 0 222222 0 0 8888 0 000 222222222222222222222 55555 8888888888888888 0 8888888888888888 22222222 0 0 0 88 8888888 88 00 8888888888888888888888888888 0 8888 0 0 0 00 0 0 0 0 0
consensus : TTAAGGATGTT-CT-CTGGT-GAGTAT--G-AN-TTT-----TTTC--ATT-G-AAT--T--AAACTT--TTT-----AA-AT-AACCCAT-CTT--A-AACTCATT-CAT-CT-TGACCA--GAAAGGCAAATTCAAAC-A-CAA-------GA-A---AA---GG-------------TAT--GT-TAGTG-C-GG--AC---T--TTAAA-GAGTT-ACAGCCCCT-CAAAG-TTA----CCCCTTTGCT--GAA-AG-TTA---C---TTTTTT---C-TTTTGAAA---ATCA-CCAT--T-TTCCAC-AAGAAAA-CACAATA-----T-AAAACAAATA-------TTCAT-GACAGN---------AAT--AAT-TTCA-TTATCTTTTATTT----CA-TGAA-AA-TTAAT-CA--T-AA--TTTATAA-TT------TT-T--AT--AACT--TTTAC---A-TAA-TT---TTTTTTCAAA---AATT-CTAG-AA-------T--AATAAC--AGATT-ATCT-AG-CAT-TATTG-GG---------GGAA--AANA-TG--ACACAAA-TTTTAAGT---C----AAATTTT--GTC--------AA-AAAA-TTCA---AT-CTA----GC---AGAGTTCC-TGAATT-AAAC-T---TTTTGTG--A---AA----TTGCCAA---C-GCAG-ATT-------TGAA-A-CA--------TA--TT--TTT---GCTCATTTT---------GAATGA-----AAAAAA-------A-GTT-GG-GG----G-------TA-G-T-TGTGCA-TTGGGAAC-AAAGTTT---TG----AACCCA-TTTTGTG--T-CC--CACCC-CCTTCTC----ATTT-TTG-TCAT-AAATT----TCAACATC-AATT-ACAATAT-TATGA--T-TTGT-TAT----AAA-----T-ATATTT-TC-TTC-----AAT---TCATAT-TTA-------CAA-ATTTTAT-G-TATTTA-TT-TAATCATATAACCA-----AT--ACTG-TCT-TAAAAAGG--T-----AT-AAATAATATTG-ATA--TACAA-A--CAA---A-A----ATAATTTC--ATT--TATC--ACT---GAAGGAA-TAC-ATGGTGGAAAAC--AAA--TGCCAC-TAAA---TTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAATTTTTGTTT--GAATAGA-----A----AAA-AAGTA-CT---T-GAG----TTGTCCTT----A-GAAACC-AATTTTTAAAC--AG-T------CAA--C-TTCCAT-GC-ACCCACTTGGA----AGAGATGTG-TACTT-C--CT------GGT-A--AT--GATTTCCC-G--AAT-GAT-GGC-ACC----ATGA---AT-C-C-----ATG--A--TT--TATAACAATTCCCGT----G--GTT-A-CAAA-AT-GG-ATG-T-AT-CT-ACAA----A--GCAG--AACCGATAAG-GA-A--CAAATTAT--TGA-TCTAGTA-GCGC--AAAGAAATATA------AAAATCAACGAAATGA-TCT-TTNTCGTTTTTTTAG-CACGAACGCCGCGCCG---------TATATTCT--CT-------------AA------------CAT---------T-------T------------TTA--CCTCGG-GA----TT-CGTTTT-GATGAATAAA---TTC----------ATTGTT-TA--CGTTGGT--GATTTTTT-A----AAAA-CTCTGAT-ACTA-TTGAATTAC---TACCNT---TTGTATTCAAAAA--TG--ATGA-TTAAAA-A----AT-AA-TGC-A--TTGGACAT-CAGGGACT--ATAGAA-TCTA---TTAACCG---ANAGGCTTTC-CT-CGC----G----C---A--GGAT-CAGA--TC---TTG------GGTAT----C-G-ATAT-TT-AGTTT-G--TAGA-TT----TTTTTAAAAA--TAAAAC-TAC-TT---AAT-GG--C-ACC---------ACAA-ATTCAC--T-C-AGA-AC-TA--TATCAACA-GCCTT-GGG-TTCAGCCACTACGTNTGC
Reference ( family-2905 ) : TTAAGGATGTT-CT-CTGGT-GAGTAT--G-AN-TTT-----TTTC--AT--G-AAT--T--AAACTT--TTT-----AA-AT-AACCCAT-CTT--A-AACTCATT-CAT-CT-TGACCA--GAAAGGCAAATTCAAAC-A-CAA-------GA-A---AA---GG-------------TAT--GT-TAGTG-C-GG--AC---T--TTAAA-GAGTT-ACAGCCCCT-CAAAG-TTA----CCCCTTTGCT--GAA-AG-TTA---C---TTTTTT---C-TTTTGAAA---ATCA-CCAT--T-TTCCAC-AAGAAAA-CACAATA-----T-AAAACAAATA-------TTCAT-GACAGN---------AAT--AAT-TTCA-TTATCTTTTATTT----CA-TGAA-AA-TTAAT-CA--T-AA--TTTATAA-TT------TT-T--AT--AACT--TTTAC---A-TAA-TT---TTTTTTCAAA---AATT-CTAG-AA-------T--AATAAC--AGATT-ATCT-AG-CAT-TATTG-GG---------GGAA--AANA-TG--ACACAAA-TTTTAAGT---C----AAATTTT--GTC--------AA-AAAA-TTCA---AT-CTA----GC---AGAGTTCC-TGAATT-AAAC-T---TTTTGTG--A---AA----TTGCCAA---C-GCAG-ATT-------TGAA-A-CA--------TA--TT--TTT---GCTCATTTT---------GAATGA-----AAAAAA-------A-GTT-GG-GG----G-------TA-G-T-TGTGCA-TTGGGAAC-AAAGTTT---TG----AACCCA-TTTTGTG--T-CC--CACCC-CCTTCTC----ATTT-TTG-TCAT-AAATT----TCAACATC-AATT-ACAATAT-TATGA--T-TTGT-TAT----AAA-----T-ATATTT-TC-TTC-----AAT---TCATAT-TTA-------CAA-ATTTTAT-G-TATTTA-TT-TAATCATATAACCA-----AT--ACTG-TCT-TAAAAAGG--T-----AT-AAATAATATTG-ATA--TACAA-A--CAA---A-A----ATAATTTC--ATT--TATC--ACT---GAAGGAA-TAC-ATGGTGGAAAAC--AAA--TGCCAC-TAAA---TTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAATTTTTGTTT--GAATAGA-----A----AAA-AAGTA-CT---T-GAG----TTGTCCTT----A-GAAACC-AATTTTTAAAC--AG-T------CAA--C-TTCCAT-GC-ACCCACTTGGA----AGAGATGTG-TACTT-C--CT------GGT-A--AT--GATTTCCC-G--AAT-GAT-GGC-ACC----ATGA---AT-C-C-----ATG--A--TT--TATAACAATTCCCGT----G--GTT-A-CAAA-AT-GG-ATG-T-AT-CT-ACAA----A--GCAG--AACCGATAAG-GA-A--CAAATTAT--TGA-TCTAGTA-GCGC--AAAGAAATATA------AAAATCAACGAAATGA-TCT-TTNTCGTTTTTTTAG-CACGAACGCCGCGCCG---------TATATTCT--CT-------------AA------------CAT---------T-------T------------TTA--CCTCGG-GA----TT-CGTTTT-GATGAATAAA---TTC----------ATTGTT-TA--CGTTGGT--GATTTTTT-A----AAAA-CTCTGAT-ACTA-TTGAATTAC---TACCNT---TTGTATTCAAAAA--TG--ATGA-TTAAAA-A----AT-AA-TGC-A--TTGGACAT-CAGGGACT--ATAGAA-TCTA---TTAACCG---ANAGGCTTTC-CT-CGC----G----C---A--GGAT-CAGA--TC---TTG------GGTAT----C-G-ATAT-TT-AGTTT-G--TAGA-TT----TTTTTAAAAA--TAAAAC-TAC-TT---AAT-GG--C-ACC---------ACAA-ATTCAC--T-C-AGA-AC-TA--TATCAACA-GCCTT-GGG-TTCAGCCACTACGTNTGC
gi|1 : TTAAGG-TGTTTCTGTTGGT-GAG-ATTGG-AC-CTCCTCTCTTTC--ATTGG-AAT--TTAAAACTT--TTTTTTTAAACAT-AACCCATTCTT--G-AACTCATTTCAT-CT-TGACCAAAGAAAGGTTAATTCCAAA-A-CAACTGAAAGGA-A---AAAGGGG-------------TAT--GT-T-GTGACAGG--AC---T--TTAAA-GAGTT-ACAGCCCAT-CAAGT-TTGATATCCCTTTTGCTCTGAA-AG-TTAAAAC---TTTTTTTGTC-GTTTGAAAGGGATCA-CCAT--T-TTCCACCAAGTAAA-CACAATAGAAATT-AAAACAAATA-------TTCATTGACAGCCTTTTAGAGAATTAAAT-CTCA-TTATCTTTTATTT----CAATGAA-AAATTAATTCGATT-AA--TTTATAA-TT------TTTT--AT--AACT--TTTAC---A-TAATTT---TTTTTTCAAATTTATTT-CTAGAAA-------TAGAATAACG-AGATT-ATCTCAG-CATATATTA-GGAGCTTGGACGAAA--AAAA-TG--AC-CAAATTTTTATGT---C----AAATTTTTGATC--------AAGAAAA-TTCA---ATATTATTAGGCGGAAGAGTCCT-TGAATTAAAAC-TTGGTTTCGTG--G---AA----ATGCCAA---TGGCAG-ATT-------CGAA-A-CAACTTAGGTTA--CTACTTTGTGGCTCATTTTTGATTTAGAGGGTGAAAAGGAAAAAA-------A-GTTCGGTGG----GGTCATATTA-GTT-TGTGCATTTGGGAAC-AAAGTTTTTATGGGATAACCTATTTTTGTG--T-CCCGCACCCGCCTTCTC----ATTTCTTGATCAT-AAATT----TCAACATCGGATT-ACAA-ATATATGACTT-TTG--TATTA--AAA-----TGGTATTC-TT-TCCTGGTGAAT---TTCTAA-TTATTTCAGGCAA-ATTTTATGG-TATTTATTT-TAATCATATAACTACTTACAT--GTTC-TCT-TAAAAAGG--------AT-AAATAATTGTG--TA--AACAATACTCAATTCA-ATGATATAAATTC--ATT--TATC--ACTTTCGA--GAA-TAC-ATGTTG--AAACTAAAA--TGCCACTTAAAGTTTTAA
gi|1 : CCAAATTTTTGTAT--GA-TAGA-----ATATCAAA-CGGTA-TTATTTAGAG----TTGCGCTTTATTA-GACACC-AATTTTTAAACTCAG-T------CAAACC-TTCCAT-GC-ACCACCTTAGAGTGAAGAGATGTGATACTTTC--CT------GGT-ATGATTAGATTTCCG-GT-AAT-GAT-G-C-ACCGGGGATGA---AT-C-CGGGTAATGTTA--TTATCATAACAATTCCCGTTCGTG--GTTGA-CAAA-ATTGG-ATGAT-GTTCT-ACAA----AAAGCAG--ACCGGATAAA-GACA--CAAATTATGTCGA-TCTGGTA-GCGTCAAAAGAAATATA------AAAATCAACAAAATGAATCT-TTTTTGTTTTTTTAGACACGA-CACCGCGCCA---------TATTTTCTTTCT-------------AAAGAATGCCGATACAT---------TAAACTATT------------TTAGCCTTCTG-GA----TT-CGTTTTTGCT--ATGAA---CTCCATAATGGCAATTATT-TA--CGTTGGT--GATTTTTTTA----AAAA-CTCTGATTACTAGTT--ATTAC-----CCTT---TTGTATTCAAAAA--TGTTATGA-TTAAGA-A----AT-AA-TGC-ACATTGGACATTCAGGGACT--ATAGAA-TCTA---ATTACCG------GGTCTTCGCTGCGC----GGCTAC---A--GGAT-CAGA--T-----TG------GGTAT----C-GCATAT-TT-AGTTTTG--TAGT-TTAGATTTTTTAAAAA--TAAAAC-TAC-TT---AATAGA--CAACT---------ACAATATTCA-----C-AGA-ACTTAT-TATCAACA-GCCTT---G-TTCAGACACTATGcttattgtccaactcttccatgccactgtgacattgacctttgatcttttactgatctctcaaaaatatcacaacaagcgatgttcccttctttagtgtcaatatcccttatgtccaaatttttgtatgatagaatatcaaacggtattatttagagttgcgctttattagacaccaatttttaaactcagtcaaaccttccatgcaccaccttagagtgaagagatgtgatactttcctggtatgattagatttccggtaatgatgcaccggggatgaatccgggtaatgttattatcataacaattcccgttcgtggttgacaaaattggatgatgttctacaaaaagcagaccggataaagacacaaattatgtcgatctggtagcgtcaaaagaaatataaaaatcaacaaaatgaatcttttttgtttttttagacacgacaccgcgccatattttctttctaaagaatgccgatacattaaactattttagccttctggattcgtttttgctatgaactccataatggcaattatttacgttggtgatttttttaaaaactctgattactagttattacccttttgtattcaaaaatgttatgattaagaaataatgcacattggacattcagggactatagaatctaattaccgggtcttcgctgcgcggctacaggatcagattgggtatcgcatatttagttttgtagtttagattttttaaaaataaaactacttaatagacaactacaatattcacagaacttattatcaacagccttgttcagacactatg
gi|10 : ttaaggtgtttctgttggtgagattggacctcctctctttcattggaatttaaaactttttttttaaacataacccattcttgaactcatttcatcttgaccaaagaaaggttaattccaaaacaactgaaaggaaaaaggggtatgttgtgacaggactttaaagagttacagcccatcaagtttgatatcccttttgctctgaaagttaaaactttttttgtcgtttgaaagggatcaccattttccaccaagtaaacacaatagaaattaaaacaaatattcattgacagccttttagagaattaaatctcattatcttttatttcaatgaaaaattaattcgattaatttataattttttataacttttacataatttttttttcaaatttatttctagaaatagaataacgagattatctcagcatatattaggagcttggacgaaaaaaatgaccaaatttttatgtcaaatttttgatcaagaaaattcaatattattaggcggaagagtccttgaattaaaacttggtttcgtggaaatgccaatggcagattcgaaacaacttaggttactactttgtggctcatttttgatttagagggtgaaaaggaaaaaaagttcggtggggtcatattagtttgtgcatttgggaacaaagtttttatgggataacctatttttgtgtcccgcacccgccttctcatttcttgatcataaatttcaacatcggattacaaatatatgacttttgtattaaaatggtattctttcctggtgaatttctaattatttcaggcaaattttatggtatttattttaatcatataactacttacatgttctcttaaaaaggataaataattgtgtaaacaatactcaattcaatgatataaattcatttatcactttcgagaatacatgttgaaactaaaatgccacttaaagttttaacttattgtccaactcttccatgccactgtgacattgacctttgatcttttactgatctctcaaaaatatcacaacaagcgatgttcccttctttagtgtcaatatcccttatgtCTCATTTT---------TAATGA-----AAAAAA-------ATGTC-AG-GG----G-------TA-G-T--GTGCG-TTGG-AAC-AAAGTTT---TG----AACC-A-TTTTGAG--TGCC--CATCC-CCTTTTC----ATTT-T-G-TCAT-AAATT----TCAAC-TC-AATA-ACAATAT-T-CAA--T-TTGT-TAT----AAAA----T-GCATAT-TC-TTC-----AAT---TCATAT-TTA-------CAA-ATCATAT-G-TATTTA-TT-CCATCGTATAA
gi|11 : tcTTAAGGATGTT-CT-CTGGT-G-GTAT--T-AT-TTT-----TTTA--AA--GTAAT--A--AAAAAT--AAT-----AA--T-AACCCAT-TTT--A-A-CTTATT-CAT-CT-TGATCA--GAAAGACAA-TTTAAAC-A-CAC-------GA-A---TA---AG-------------TAT--AT-CAGTG-T-GGT-ACATGTAGTCAAA-GTGTT-ACAGCTCCT-GAAAG-TTA----GCCCTTTGCT--GAA-AG-TTA---TATATATTTT---C-TTTgac
gi|12 : gTTTTAA-C--AG-C------CAA--C-TTTCAT-GC-GACCATAATGA----AGATATATC-CACTT-C--CT------GGT-AT-AT---ATT--CT-GT-TAT-GAT-GAC-ACT----ATGACTCAT-CGC-----ATT--T--TT--TGT--------CTGT----G--ATT-A-CAAA-TT-AA-ATG-T-AG-GT-ACAAAACGA--GCAG--AAACG
gi|13 : agTTAAGGATGTT-CT-CTGCT-T-TTAT--GAAG-TTT-----TTTC--A---A-AATAAT--AAACTT--TTT-----AA-AT-AACCCA---TT--ATAACTCATT-CAT-CT-TCACCA--GGAAGGC-AATTTAAAC-A-CAA-------GAGA---AG---GG-------------TGC--AT-TGGTG-T-CG--AC---T--TC-CA-GAGTT-ACAGGCCCT-ggaaacag
gi|14 : TTGAAA---ATCA-CCAT--T-TTCCAC-AAGAAA--CACAATG-----T-AAACCAAATA-------ATC---------------------------TCCA-TTATCTTTTCGTC----CA-TGAA-AA-TCAGT-CA--T-AA--TTTATAA-TT------TT-G--AT--AACA--TTTACCCAA-AAA--------TGTTCAAC---AATT-CTTT-AA-------T--AATA
gi|15 : c---AATT-CTAG-AAATACACGT--AATAAC--TGATT-ATCT-AG-CAT-TATTG-GA---------G-AA--AAC--TG--GCACAAA-TGTTAAGT---C----ATATTTT--GTC---------A-AAAT-TTCA---AT-CTA----GC---t
gi|16 : tttgtcAAGGATGTT-CT-CTGGT-GAG-AT--G-AC-TTT-----TTTC--ATTCG--AT--T--AAACTT--TTTAAA--AA-AT-AACCCAT-CTTA-A-AACTCATT-CAT-CT-TGACCA--G--AGGC-AATTCAAA
gi|17 : ta-CACGACCGCCGCGCCA---------TAT-TTCT--CT-------------AA-------------AT---------T-------TGATAGATCTATTTTA--CCCCGG-GA----TT-CGTTTT-GATGACTAAA---TTC----------ATTGTT-TA--CGTTGGT--GATTTTTT-
gi|18 : AT-CT-TGATCA--GAAAGACAA-TTTAAAC-A-CAA-------GT-A---AA---GGATACATGTATATATATAAGT-AAGTG-T-GG--AC---T--TTAAAAGAGTT-ACCGCCCCT-CAAAG-
gi|2 : TTAAGGATGTT-CT-CTGGTTGAG-AT--G-AAATTT-----TTTC--AT--G-AAT--TTTAAACTT--TTTT----AA-AT-AACCCAT-CTT--A-A-CTCATT-CAT-CTATGACCA--GAAAGGCCAATTCAAAC-A-CAA-------GA-A---AAA--GG-------------TAT--GT-TAGTG-C-GG--AC---T--TTAAA-GAGTT-ACAGCCCCT-CAAAG-TTA-----CCCTTTGCT--GAA-AG--TA---C---TTTTTT---CTTTTTAAAA---ATCA-CCATC-T-TTCCAC-AAG--AA-CACAATA-----T-AAAACAAATA-------TTCAT-GACAGA---------A----AAT-CTCA-TTATC--TTA-TT----CA-TGAA-AA-TTAAT-CA--TGAA--TTTATAATTT------TT-T--ATTAAACT--TTTAC---ATTAA------TTTTTTCAAA---AATT-CTAA-AA-------T--AATAAC--AGATT-ATCT-AG-CAT-TATTG-GG---------GGAACGAAAA-CGACACACAAA-TT---ACT---CGCTAAAATTTT--GTCCACGCAAAAA-AAAA-ATAAAACAT-ATA----GC---AGAGTTCCTTGAATT-AAAC-T---TTTTTTG--ATCGAACACTTTGCCAAAGCC-ACAG-ATTACCATCATAAA-A-CA--------TATCTT--CTT---GCTCATTTT---------GAATGA-----AAAAAAAAAACACA-GTT-GA-GGCCAAG-------CAGG-TATGTGCA-TT-GGAAC-AAAGATT---TG----AA-CCA--TTTGTGA-T-CC--CACCC-CCCTCTCTCCAATCT-TTG-TCATAAAATTTATATCAACATC-AATTAACAATAA-TATGA--TGCTGTCCATACTAAAA-----TGATATTTCTCACTC-----AATCA-TCATATAATA-------CAA-ATTTAA----TATTTA-TTATAATCATATAACC------AT--ACTGATC----AAAAGG--TAAAAAAT-AAA-AATATTGAATACTTACAA-A--CAA---ATA----ATAA-TTCAAATTAATATC--ACT---GAAGGAA-TACAATAGTGG-AAAC--AAATTTG-CAC-AAAC---TTAA
gi|2 : CCAAATTTTTGTTTCCGAATAGATAACAA----AAA-AAGTACCT---T-GAG-----TGTCCTT----C-GAACAC-AATCCTTTAAC--AG-TAATAACCAA--CATTCCATCGCAAAACAC--GGA----AGAGA-----TACTT-CAACTGACCAAGGT-A--AT--GATTTCAC-GGAAAT-GATCGGCAACCA---ATGA---AT-C-C-----ATG--ATCTT--TATAACCATTCCTGT----GCCGTT-A-CAAACAT-GGAATG-TGAT-CCAACAA----G--ACAGAAAACCGATAAGAGA-AACCAAATTAT--TGA-TCTAGTAGGCGC--AAAGAAATATACATGTTAAAATCAACGAAATGA-TCTGTTGTCATTT-----G-CACGAACGCC-CACCGCCCAACCAATATATTCT--CTAAACCTGACGACCAA------------TATCAAACTCTAT-------T------------TTA--CCTCGGCGAAACCTTACG-TTT-GATGAATAAAACTTTC----------ATGATTATACCCGCTTGTAGGAACTTTT-ATACCAAAACCTCTGAT-ATTA---GAATTACACATACCATATATTG-ATTCAAAAACCTG--ATGA-TTACAA-ATACCATAAA-TGCAA--TTGAACAT-CAAGGACTCAATAGAA-AACA---TCAACTA---CCGGGCTTCC-TG-CGCTCAGG----C---AATGGATACAGAATCC---TTGAGAAGAGGTATCAGAC-A-ATAT-TTCAGTTT-G--TAGA-------TCTTTAGAAATCTAAAACTTACGTTCCAAAT-AGAAC-ACCAATCCTACAACAA-ATTCACAAT-CAAGA-AC-TACCCATCAACA-G-CTT-GGGTTTCAGCCcattgtcccaatttcatgcccctgtgacattgacctttgaactttctgacatcccataaatattaacaagtgacaatgtcccttctctagtgcgtatcgatatgtctccaaatttttgtttccgaatagataacaaaaaaagtaccttgagtgtccttcgaacacaatcctttaacagtaataaccaacattccatcgcaaaacacggaagagatacttcaactgaccaaggtaatgatttcacggaaatgatcggcaaccaatgaatccatgatctttataaccattcctgtgccgttacaaacatggaatgtgatccaacaagacagaaaaccgataagagaaaccaaattattgatctagtaggcgcaaagaaatatacatgttaaaatcaacgaaatgatctgttgtcatttgcacgaacgcccaccgcccaaccaatatattctctaaacctgacgaccaatatcaaactctattttacctcggcgaaaccttacgtttgatgaataaaactttcatgattatacccgcttgtaggaacttttataccaaaacctctgatattagaattacacataccatatattgattcaaaaacctgatgattacaaataccataaatgcaattgaacatcaaggactcaatagaaaacatcaactaccgggcttcctgcgctcaggcaatggatacagaatccttgagaagaggtatcagacaatatttcagtttgtagatctttagaaatctaaaacttacgttccaaatagaacaccaatcctacaacaaattcacaatcaagaactacccatcaacagcttgggtttcagcctaaccggccataa
gi|20 : ttaaggatgttctctggttgagatgaaattttttcatgaattttaaacttttttaaataacccatcttaactcattcatctatgaccagaaaggccaattcaaacacaagaaaaaggtatgttagtgcggactttaaagagttacagcccctcaaagttaccctttgctgaaagtacttttttctttttaaaaatcaccatctttccacaagaacacaatataaaacaaatattcatgacagaaaatctcattatcttattcatgaaaattaatcatgaatttataattttttattaaacttttacattaattttttcaaaaattctaaaataataacagattatctagcattattgggggaacgaaaacgacacacaaattactcgctaaaattttgtccacgcaaaaaaaaaataaaacatatagcagagttccttgaattaaactttttttgatcgaacactttgccaaagccacagattaccatcataaaacatatcttcttgctcattttgaatgaaaaaaaaaaacacagttgaggccaagcaggtatgtgcattggaacaaagatttgaaccatttgtgatcccacccccctctctccaatctttgtcataaaatttatatcaacatcaattaacaataatatgatgctgtccatactaaaatgatatttctcactcaatcatcatataatacaaatttaatatttattataatcatataaccatactgatcaaaaggtaaaaaataaaaatattgaatacttacaaacaaataataattcaaattaatatcactgaaggaatacaatagtggaaacaaatttgcacaaacttaacattgtcccaatttcatgcccctgtgacattgacctttgaactttctgacatcccataaatattaacaagtgacaatgtcccttctctagtgcgtatcgatatgtctTTCAC--T-C-AGA-AC-TA--TATCAACA-GCCTTGGGG-TTCAGCCATTA-GTATGCtaaccggccataa
gi|3 : TTAAGGATGTT-CT-CTGGT------------T-TTT-----TTTC--TT--G-AAT--T--AAACTT--TTT-----GA-AT-AACCCAT-TTT--A-AACTCATT-CAT-CT-TGACCA--GAACGGCAAATTCAAAC-A-CAA-------GA-A---AA---AG-------------TAT--GT-TAGTG-C-GG--AC---C--TTAAA-GAGTT-ACAGCCCCT-GAAAG-TTA----CCCCTTTGCT--GAA-AG-TTA---C---TTTTTT---C-TTTTAAAA---CTTA-CCAT--T-TTCCAC-AAGAAAA-CACAATA-----T-AAAACAAATA-------TTCAT-GACA-T---------AAT--AAT-TTCA-TTATCTTTTATTT----CA-TGAA-AA-TTAAT-CA--T-AA--TTTATAA--T------TT-T--AT--AACT--TTT-C---A-TAA-TT---TTTTTTCAAA---AATT-CTAG--A-------T--AATAAC--AGATT-ATAT-AG-CAT-TAT---GG---------GGAA--AATA-TG--ACCCAAA-TTTTAAGT---C----AAA-TTT--GTC--------AA-AAAA-TCCA---AT-CTA----GCA--AGAGTTTC-TGAATT-AAAC-----TTTTGTG--A---AA----TTGCTAC---T-GTAG-ATT-------TGAA-ATCA--------TA--TT--TTT---GCTCA-TTT---------GAATG------AAAAAA-------A-GTT-GG-GG----G-------TA-G---TGTGCA-TTGGGAAC-AAAGTTT---TG----AACCCA-TTTT-TG--T-CC--CACCC-CCTTC-C----ATCT-TTG-TCAT-AAATT----TC-ACATC-AATT-ACAATAT-GATGA--T-TTGT-TAT----AAA-----T--TATTT-CC-TTC-----AAT---TCATAT-TTA-------CAA-ATTTTAT-G-TATTTA-TC-TAATTATATAACCA-----ATCAACTG-TC--TAAAAAGG--T-----AT-AAATAAT-TTG--TA--TATGA-A--CAA---A-A----TTAATTCC--ATT--TATC--ACT---GAA--AATTAC-GTGGTGGAAAAC--AAG--TG--AC-TAAA---TTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAATTTTGTTTT--GAATAGA-----A----AAACAAGTA-CT---T-GAG----TTATCCTT----A-AAAACC-AATTTTT-AAC--AGTT------CAA--C-TTCCAT-GC-ACCCA-TTGGA----AGAG-TGTG-TACTT-C--CT------GGT----AT--GGTTT-TC-G--AAA-GAT--GC-ACC----ATG----AT-C-C-----ATG--A--TT--AAT-AC-ATTCCC-T----G--GTT-A-CAAA-AT-GG-ATG-T-AT-CT-ACAA----A--GCAC--AACCGATAAG-GA-A--CAAATT-T--TGA-TCTAGTA-GCGC--AAAGAAATATA------AAAATCAACAAAGTGA-TCC-TTATCG---TTTTAG-CATGAACGCCGCGCCG---------CATATTCT--CT-------------AA------------CAT---------T-------T------------TTA--CCTCGG-GA----TT-CATTTT-GATGAATAAA---TTC----------ATTGTT-TA--CATTGGT--GATTTTTT-A----AAAA-CTCTGAT-AC---TTGA--------TACCCT---TTTTATTC-AAAA--TG--ATGAGTTAAAA-A----AT-AATTGC-A--CTGGACAT-CAGGGACT------AA-T-TA---TT--CCG---AAAGGCTTTC-CT-CGC----G----C---A--GGAT-CAGA--TCAATTTG------GGGAT----C-G-ATAT-TT-AGTTT-G--TAGATTT----TTTTTAAATA--TAAAA--TACTTT---AAT-GG--C-ACCTT-------ACAA-ATTCAC--T-C-AGT-AC-TA--TATCAACAGGCCTT-GGG-TTCAGCCACTACGTTTGC
gi|4 : TTAAGGATGTT-CT-TTGGT-GAG-AT--G-AAATTT-----TTTC--ATT-G-AAT--T--AAACTTCCTTT-----GA-ATTAACCCAT-CTCTGG-AACTCATT-CATTCT-TGACCA--GAAAGGCAATTCCAAACCATCAA-------GA-ATAAGA---GG-------------TAT--GTGTAGTG-C-GGGGAC---TG-TTAAAAGAGTTGACAGTCCCTTCAAGGGTTA----CCC-TTTGCCTGGAATAGCTTA---C---TTTTT----C-TTTGGATAT--ATCAGCCATATTATTCCAC-AAGAAAATCA-AATA-----TCAAAACAAATACCACCCATTCAT-GACAGT---------AAT--AATCTTCAATTATCTAGTATCTTCCTCACTGAATAA-TTAAT-C---T-AACTTTTATAA-TTATGATATT-T--AT--AGCTGCTTTAC---A-TTA-TTGACTTTTTCCAAA---AAATACGAC-AA-------T--AATAACTCAGATTTATCT-AGGCAT-TATTGTGG---------GGAA--AACAATG--ACACAAA-TTTTAAGTTGTC----AAATTTT--GGC--------AA-AAAAGTTCA---AT-CTA----GC---AGAGTTCCGTG-ATT-AAACTT---TTTTGTGGAA---AA----TTGATAAT--C-GCAGAATT-------TGAATG-AA--------T---TT--TTT---GCTCA--TT---------GAATG-------AAAAA-------A-GTT-AG-GG----A-------TA-G---CGTGCA-TT-GGAACAAAAGGTT---TG----AACCAT-TTTTGTGTCT-CC--CACCC-CTTTCTC----ATTT-TT--TCAT-AAATT----TCAAC-TC-AAAT-ACAATA--TATGA--T-TTGTATAT----AAA-----T-ATATTT-TC-TTC-----AATTTATCATAT-TTA-------CAATTTTTTAT-GATATTTA-TT-TAATCATATA---A-----AT--ACTG-TCT-TAAAAAGGTCT-----ATCAAAT-AT-TTGTATA--TACAA-A--CAA---T-A----ATAA-TTA--ATT--TATTAAACT---GAAGAAA-TAC-A--GTGAAA
gi|5 : AAGGATGTT-CT-CTGGT-G-GTGT--G-AA-TTT-----TTTTCAAA--G-AAA--T--AAACTC--TTT-----GA-AT-AACGCAT-TTT--A-A-CTCATT-CAT-CT-TGACCA--GAAAGGCAA-TTTAAAA-A-CAA--------A-A---AA---GG-------------TAT--GT-CAGTA-T-GA--AC---T--TTAAA-GAGAT-ACAGCTCCT-CAAAG-TTT----CCCCTTTGCT--GAA-AG-TTA---C---TTTTTT---T-TTTCGAAA---ATCA-CCAT--T-TTCTAC-AA-AAAA-CACAATA-----T-AAAACAAATA-------TT-AT-GACA-A---------AAT--AATATTCA-TTATCATCTATTT----CA-TGAA-AA-TTAAT-CA--T-AA--CGTATAA-TT------TT-TACAT--AAAT--TTT
gi|6 : cCCAA--TTTTGTTT--GAATAGA-----A----TAA-AAGTA--T---T-GAGGGGGCTGTCCTT----AAGAAACCCAATTTTGAAAC--AG-T------CAA--C-TTCTAT-GC-ACCCACTTGGA----AGAGATGTG-CACTT-C--CT------GGTAA--AT--GATTTTCCGG--AATGGAT-GGC-ACC----ATGA---ATCC-C-----ATG--C--TT--CTTAGAATTTTCTGT----G--GTT-ACCAAA-AT-GG-ATG-T-AT-CT-ACAAC---A--GC-G--AACCGATAAC-AA-A---AAATTAA--TGAGTCTAGTA-GCGC--AAAGAAgtcaaga
gi|7 : tattctattttaatctTC-AATT-ACAATAT----GA--T-TTGT-TAT----AAAATGCAT-ATATAT-TC-TTC-----AAT---TCATAT-TTA-------AAA-ATTTTAT-G-TATTTA-TT-TTATCACA-AA--A-----AT--ACTG-TCTAAAAAAAAG--T-----AT-AA--AATATTG--TA--CACAA-A--C-------A----AT-ATTTC--ATT--TATC--ACT---GAA-GAA-TAC-AT-GTGG-AAAC--ATA--TGCCAC-TAAA---TTAA
gi|8 : GTA-CT---T-GAG----TTATCATT----A-GAAACC-AATTTT--AAC--AG-T------CAA--C-TTCCAT-GC-ACCCACTTGGA----AGATATGTG-TACTT-C--CT------GGT-A---T--GATTTCCC-G--AAT-GAT-GAC-ACC----ATGA---AT-C-C-----ATA--A--TT--TATAACATTCCCTGT----G--GTT-A-CAAA-AT-GG-ATG-T-AT-CT-ACAA----A--GCAG--AACCGATAAG-AA-A--CAAATCAT--TGA-TCTAGTA-GCGC--AAAGAAACAT-------AAAATCAACcattgtccaattccatgcactgtgacattgacctttgaccttctgactccaaaattcactggtattaagccaatgcc
gi|9 : tcttatgtccaaatttggtttAAA--TG--ATGA-TTAAAAAA----AT-AA-TGC-A--TTGGACAT-CAGGGACT--ATAGAATTCTAAATTTAGCCGAGAAGAAGCTTTC-CT--GC----G----CTGGA--TGAT-CAGA--T----TGG------GGTAT----CAG-ATATGTT-AGTTT-GGTTAGA--T----TTTTTAAAAA--TAAAA--TAC-TT---AA--------A-----------ACAA-AATCAC--TCC-AGACAC-TA--TATCAACA-TCTTT-GGG-TTCAGC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TAATGACCTTTTAAACCTAGGAATGACATTTACAGTGCTTATATACACAGGCACTTGACGTTTTAAATATATTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33333333333333 11111 1111 11111 222222 1111 1 1111111 111 2222222222222 11 1111 1 11111 11 1111111 111 111 11 11111 2222222 4444444444444444 1 1111 1 111 111111 1111 111 333333 111 2222222222 11 111 333333333 11 11 22222222 11 222222222 111 1111 222 2 1 33333 222222222222 33333 1 4444444444444444444444444444 11 111 1 333333333 333333 2222222 44444444444444444444 1 111 1111 1111 11 11 1111 1111 1 1111 1 2222 33333333 11111 222 2222222 22222222 11 111 33333333 1 33 11 11 3333333333 1 11 11 11 111 11 1111 11 11 11 1 1 111 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 3333333333 1 111111 22222 222222 11 11111111 1111 111111 2222 22 2222 111 11111 11111 11111 1111 2222222 11 11 11 3333333 1 1 1111 1 444444444 11 888888888888888888888888888888888888888888888888888888888888 11 1 2222 1 1 111 4444444444 1 11 11 222222 1 1 6666666666666666 222 11 11 1 222222 1 1 1111 1 111 333333333333333333333 11111 4444444444444444 1 5555555555555555 22222222 1 1 1 11 4444444 11 22 8888888888888888888888888888 1 1111 11 1
lowQualScore : 5 5 44444444444444 22222 5 3333 44444 66 999999 5 5 5 7777 3 5 4 4 66 2 4 5 5 6666666 5 888 333 7777777777777 66 5 888 11 5 5555 0 5 5 5 66666 1 88 6 6 6666666 111 6 888 6 55 6 6 3 6 66666 6 1111111 6 7777777777777777 3 6 3 3 4444 3 6 6 6 000 6 99 6 999999 0000 99 99 0 444 8 333333 111 6 77 1111111111 99 8 8 8 8 777 222222222 11 999 11 5 8 0 11111111 0 11 999999999 8 8 444 8 7777 222 0 3 0 00000 999999999999 55555 0 9999999999999999999999999999 33 777 0 222222222 000000 6666666 8 8 8 99999999999999999999 8 0 8 1 444 7777 3333 99 8 11 8 0 7777 8 888 8 7777 0 0 6 6 6666 99 6 3 3333 11111111 6 6 66666 000 6 1111111 6 777 6 6 99999999 11 8 999 11111111 8 777 5 66 11 8 11 0 1111111111 0 5 11 11 11 444 55 8 1111 88 33 33 5 0 777 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3 33 3 7777777777 0 666666 8 00000 000000 8 00 99 99999999 99 6 6 6 44 4444 6 6 99 999999 1111 99 5 6 22 6 888 6 0000 111 6 6 66666 77777 999 44444 0 4444 99 6 6 6 6 6 6 6 6 6 3333333 99 8 8 11 0 11 8 8 11 2222222 0 3 3 1 2222 0 9 2 000000000 9 33 222222222222222222222222222222222222222222222222222222222222 33 0 1111 0 3 0 2 777 3333333333 0 33 33 999999 3 3 5555555555555555 1 333 7 7 33 33 0 222222 0 0 4444 0 777 222222222222222222222 33333 4444444444444444 0 3333333333333333 55555555 0 0 0 33 3333333 33 55 2222222222222222222222222222 0 4444 8 8 8 99 8 8 8 2 1
lowQualScore : . . .............. ..... . .... ..... .. ...... . . . .... . . . . .. . . . . ....... . ... ... ............. .. . ... .. . .... . . . . ..... . .. . . ....... ... . ... . .. . . . . ..... . ....... . ................ . . . . .... . . . . ... . .. . ...... .... .. .. . ... . ...... ... . .. .......... .. . . . . ... ......... .. ... .. . . . ........ . .. ......... . . ... . .... ... . . . ..... ............ ..... . ............................ .. ... . ......... ...... ....... . . . .................... . . . . ... .... .... .. . .. . . .... . ... . .... . . . . .... .. . . .... ........ . . ..... ... . ....... . ... . . ........ .. . ... ........ . ... . .. .. . .. . .......... . . .. .. .. ... .. . .... .. .. .. . . ... ........................................................................................... . .. . .......... . ...... . ..... ...... . .. .. ........ .. . . . .. .... . . .. ...... .... .. . . .. . ... . .... ... . . ..... ..... ... ..... . .... .. . . . . . . . . . ....... .. . . .. . .. . . .. ....... . . . . .... . . . ......... . .. ............................................................ .. . .... . . . . ... .......... . .. .. ...... . . ................ . ... . . .. .. . ...... . . .... . ... ..................... ..... ................ . ................ ........ . . . .. ....... .. .. ............................ . .... . . . .. . . . . .
lowQualScore : 0 0 55555555555555 55555 0 2222 99999 99 000000 0 0 0 8888 2 0 4 4 11 9 8 0 0 2222222 0 888 888 5555555555555 99 0 000 99 0 6666 0 0 0 7 77777 0 33 7 7 0000000 777 7 333 7 88 7 7 5 7 77777 7 7777777 7 2222222222222222 3 7 5 2 2222 3 7 7 7 888 7 22 7 222222 8888 22 22 8 000 0 222222 777 7 77 8888888888 00 0 0 0 0 000 000000000 00 888 00 6 0 8 00000000 8 00 888888888 0 0 000 0 0000 000 0 2 0 88888 222222222222 55555 0 5555555555555555555555555555 88 555 6 000000000 666666 0000000 0 0 0 66666666666666666666 0 0 0 0 000 0000 2222 00 0 00 0 8 0000 0 888 0 0000 8 6 7 7 5555 22 7 3 3333 88888888 7 7 77777 888 7 7777777 7 555 7 7 00000000 00 0 666 88888888 0 222 8 44 00 0 00 8 0000000000 8 8 00 00 00 000 88 0 0000 66 88 88 0 0 555 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2 88 2 2222222222 0 222222 0 88888 888888 0 77 22 33333333 22 7 7 7 55 2222 7 7 22 222222 7777 22 2 7 55 7 777 7 8888 777 7 7 77777 77777 555 00000 7 2222 22 7 7 7 7 7 7 7 7 7 5555555 22 0 0 00 8 00 0 0 00 0000000 7 3 3 0 7777 0 2 5 000000000 8 88 555555555555555555555555555555555555555555555555555555555555 88 0 2222 0 2 0 5 555 8888888888 0 88 88 333333 3 3 0000000000000000 0 333 3 3 88 88 0 222222 0 0 8888 0 000 222222222222222222222 55555 8888888888888888 0 8888888888888888 22222222 0 0 0 88 8888888 88 00 8888888888888888888888888888 0 8888 0 0 0 00 0 0 0 0 0
consensus : TTAAGGATGTT-CT-CTGGT-GAGTAT--G-AN-TTT-----TTT-CATTG-AAT--T--AAACTT--TTT-----GA-AT-AACCCAT-CTT--A-AACTCATT-CAT-CT-TGACCA--GAAAGGCAAATTCAAAC-A-CAA-------GA-A---AA---GG-------------TAT--GT-TAGTG-C-GG--AC-T----TTAAA-GAGTT-ACAGCCCCT-CAAAG-TTA----CCCCTTTGCT--GAA-AG-TTA---C---TTTTTT---C-TTTTGAAA---ATCA-CCAT--T-TTCCAC-AAGAAAA-CACAATA-----T-AAAACAAATA-------TTCAT-GACAGN---------AAT--AAT-TTCA-TTATCTTTTATTT----CA-TGAA-AA-TTAAT-CA--T-AA--TTTATAA-TT------TT-T--AT--AACT--TTTAC---A-TAA-TT---TTTTTTCAAA---AATT-CTAG-AA-------T--AATAAC--AGATT-ATCT-AG-CAT-TATTG-GG---------GGAA--AANA-TG--ACACAAA-TTTTAAGT---C----AAATTTT--GTC--------AA-AAAA-TTCA---AT-CTA----GC---AGAGTTCC-TGAATT-AAAC-T---TTTTGTG--A---AA----TTGCCAA---C-GCAG-ATT-------TGAA-A-CA--------TA--TT--TTT---GCTCATTTT---------GAATGA-----AAAAAA-------A-GTT-GG-GG----G-------TA-G-T-TGTGCA-TTGGGAAC-AAAGTTT---TG----AACCCA-TTTTGTG--T-CC--CACCC-CCTTCTC----ATTT-TTG-TCAT-AAATT----TCAACATC-AATT-ACAATAT-TATGA--T-TTGT-TAT----AAA-----T-ATATTT-TC-TTC-----AAT---TCATAT-TTA-------CAA-ATTTTAT-G-TATTTA-TT-TAATCATATAACCA-----AT--ACTG-TCT-TAAAAAGG--T-----AT-AAATAATATTG-ATA--TACAA-A--CAA---A-A----ATAATTTC--ATT--TATC--ACT---GAAGGAA-TAC-ATGGTGGAAAAC--AAA--TGCCAC-TAAA---TTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAATTTTTGTTT--GAATAGA-----A----AAA-AAGTA-CT---T-GAG----TTGTCCTT----A-GAAACC-AATTTTTAAAC--AG-T------CAA--C-TTCCAT-GC-ACCCACTTGGA----AGAGATGTG-TACTT-C--CT------GGT-A--AT--GATTTCCC-G--AAT-GAT-GGC-ACC----ATGA---AT-C-C-----ATG--A--TT--TATAACAATTCCCGT----G--GTT-A-CAAA-AT-GG-ATG-T-AT-CT-ACAA----A--GCAG--AACCGATAAG-GA-A--CAAATTAT--TGA-TCTAGTA-GCGC--AAAGAAATATA------AAAATCAACGAAATGA-TCT-TTNTCGTTTTTTTAG-CACGAACGCCGCGCCG---------TATATTCT--CT-------------AA------------CAT---------T-------T------------TTA--CCTCGG-GA----TT-CGTTTT-GATGAATAAA---TTC----------ATTGTT-TA--CGTTGGT--GATTTTTT-A----AAAA-CTCTGAT-ACTA-TTGAATTAC---TACCNT---TTGTATTCAAAAA--TG--ATGA-TTAAAA-A----AT-AA-TGC-A--TTGGACAT-CAGGGACT--ATAGAA-TCTA---TTAACCG---ANAGGCTTTC-CT-CGC----G----C---A--GGAT-CAGA--TC---TTG------GGTAT----C-G-ATAT-TT-AGTTT-G--TAGA-TT----TTTTTAAAAA--TAAAAC-TAC-TT---AAT-GG--C-ACC---------ACAA-ATTCAC--T-C-AGA-AC-TA--TATCAACA-GCCTT-GGG-TTCAGCCACTACGTNTGC
Reference ( family-2905 ) : TTAAGGATGTT-CT-CTGGT-GAGTAT--G-AN-TTT-----TTT-CATTG-AAT--T--AAACTT--TTT-----AA-AT-AACCCAT-CTT--A-AACTCATT-CAT-CT-TGACCA--GAAAGGCAAATTCAAAC-A-CAA-------GA-A---AA---GG-------------TAT--GT-TAGTG-C-GG--AC-T----TTAAA-GAGTT-ACAGCCCCT-CAAAG-TTA----CCCCTTTGCT--GAA-AG-TTA---C---TTTTTT---C-TTTTGAAA---ATCA-CCAT--T-TTCCAC-AAGAAAA-CACAATA-----T-AAAACAAATA-------TTCAT-GACAGN---------AAT--AAT-TTCA-TTATCTTTTATTT----CA-TGAA-AA-TTAAT-CA--T-AA--TTTATAA-TT------TT-T--AT--AACT--TTTAC---A-TAA-TT---TTTTTTCAAA---AATT-CTAG-AA-------T--AATAAC--AGATT-ATCT-AG-CAT-TATTG-GG---------GGAA--AANA-TG--ACACAAA-TTTTAAGT---C----AAATTTT--GTC--------AA-AAAA-TTCA---AT-CTA----GC---AGAGTTCC-TGAATT-AAAC-T---TTTTGTG--A---AA----TTGCCAA---C-GCAG-ATT-------TGAA-A-CA--------TA--TT--TTT---GCTCATTTT---------GAATGA-----AAAAAA-------A-GTT-GG-GG----G-------TA-G-T-TGTGCA-TTGGGAAC-AAAGTTT---TG----AACCCA-TTTTGTG--T-CC--CACCC-CCTTCTC----ATTT-TTG-TCAT-AAATT----TCAACATC-AATT-ACAATAT-TATGA--T-TTGT-TAT----AAA-----T-ATATTT-TC-TTC-----AAT---TCATAT-TTA-------CAA-ATTTTAT-G-TATTTA-TT-TAATCATATAACCA-----AT--ACTG-TCT-TAAAAAGG--T-----AT-AAATAATATTG-ATA--TACAA-A--CAA---A-A----ATAATTTC--ATT--TATC--ACT---GAAGGAA-TAC-ATGGTGGAAAAC--AAA--TGCCAC-TAAA---TTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAATTTTTGTTT--GAATAGA-----A----AAA-AAGTA-CT---T-GAG----TTGTCCTT----A-GAAACC-AATTTTTAAAC--AG-T------CAA--C-TTCCAT-GC-ACCCACTTGGA----AGAGATGTG-TACTT-C--CT------GGT-A--AT--GATTTCCC-G--AAT-GAT-GGC-ACC----ATGA---AT-C-C-----ATG--A--TT--TATAACAATTCCCGT----G--GTT-A-CAAA-AT-GG-ATG-T-AT-CT-ACAA----A--GCAG--AACCGATAAG-GA-A--CAAATTAT--TGA-TCTAGTA-GCGC--AAAGAAATATA------AAAATCAACGAAATGA-TCT-TTNTCGTTTTTTTAG-CACGAACGCCGCGCCG---------TATATTCT--CT-------------AA------------CAT---------T-------T------------TTA--CCTCGG-GA----TT-CGTTTT-GATGAATAAA---TTC----------ATTGTT-TA--CGTTGGT--GATTTTTT-A----AAAA-CTCTGAT-ACTA-TTGAATTAC---TACCNT---TTGTATTCAAAAA--TG--ATGA-TTAAAA-A----AT-AA-TGC-A--TTGGACAT-CAGGGACT--ATAGAA-TCTA---TTAACCG---ANAGGCTTTC-CT-CGC----G----C---A--GGAT-CAGA--TC---TTG------GGTAT----C-G-ATAT-TT-AGTTT-G--TAGA-TT----TTTTTAAAAA--TAAAAC-TAC-TT---AAT-GG--C-ACC---------ACAA-ATTCAC--T-C-AGA-AC-TA--TATCAACA-GCCTT-GGG-TTCAGCCACTACGTNTGC
gi|1 : TTAAGG-TGTTTCTGTTGGT-GAG-ATTGG-AC-CTCCTCTCTTT-CATTGGAAT--TTAAAACTT--TTTTTTTAAACAT-AACCCATTCTT--G-AACTCATTTCAT-CT-TGACCAAAGAAAGGTTAATTCCAAA-A-CAACTGAAAGGA-A---AAAGGGG-------------TAT--GT-T-GTGACAGG--AC-T----TTAAA-GAGTT-ACAGCCCAT-CAAGT-TTGATATCCCTTTTGCTCTGAA-AG-TTAAAAC---TTTTTTTGTC-GTTTGAAAGGGATCA-CCAT--T-TTCCACCAAGTAAA-CACAATAGAAATT-AAAACAAATA-------TTCATTGACAGCCTTTTAGAGAATTAAAT-CTCA-TTATCTTTTATTT----CAATGAA-AAATTAATTCGATT-AA--TTTATAA-TT------TTTT--AT--AACT--TTTAC---A-TAATTT---TTTTTTCAAATTTATTT-CTAGAAA-------TAGAATAACG-AGATT-ATCTCAG-CATATATTA-GGAGCTTGGACGAAA--AAAA-TG--AC-CAAATTTTTATGT---C----AAATTTTTGATC--------AAGAAAA-TTCA---ATATTATTAGGCGGAAGAGTCCT-TGAATTAAAAC-TTGGTTTCGTG--G---AA----ATGCCAA---TGGCAG-ATT-------CGAA-A-CAACTTAGGTTA--CTACTTTGTGGCTCATTTTTGATTTAGAGGGTGAAAAGGAAAAAA-------A-GTTCGGTGG----GGTCATATTA-GTT-TGTGCATTTGGGAAC-AAAGTTTTTATGGGATAACCTATTTTTGTG--T-CCCGCACCCGCCTTCTC----ATTTCTTGATCAT-AAATT----TCAACATCGGATT-ACAA-ATATATGACTT-TTG--TATTA--AAA-----TGGTATTC-TT-TCCTGGTGAAT---TTCTAA-TTATTTCAGGCAA-ATTTTATGG-TATTTATTT-TAATCATATAACTACTTACAT--GTTC-TCT-TAAAAAGG--------AT-AAATAATTGTG--TA--AACAATACTCAATTCA-ATGATATAAATTC--ATT--TATC--ACTTTCGA--GAA-TAC-ATGTTG--AAACTAAAA--TGCCACTTAAAGTTTTAA
gi|1 : CCAAATTTTTGTAT--GA-TAGA-----ATATCAAA-CGGTA-TTATTTAGAG----TTGCGCTTTATTA-GACACC-AATTTTTAAACTCAG-T------CAAACC-TTCCAT-GC-ACCACCTTAGAGTGAAGAGATGTGATACTTTC--CT------GGT-ATGATTAGATTTCCG-GT-AAT-GAT-G-C-ACCGGGGATGA---AT-C-CGGGTAATGTTA--TTATCATAACAATTCCCGTTCGTG--GTTGA-CAAA-ATTGG-ATGAT-GTTCT-ACAA----AAAGCAG--ACCGGATAAA-GACA--CAAATTATGTCGA-TCTGGTA-GCGTCAAAAGAAATATA------AAAATCAACAAAATGAATCT-TTTTTGTTTTTTTAGACACGA-CACCGCGCCA---------TATTTTCTTTCT-------------AAAGAATGCCGATACAT---------TAAACTATT------------TTAGCCTTCTG-GA----TT-CGTTTTTGCT--ATGAA---CTCCATAATGGCAATTATT-TA--CGTTGGT--GATTTTTTTA----AAAA-CTCTGATTACTAGTT--ATTAC-----CCTT---TTGTATTCAAAAA--TGTTATGA-TTAAGA-A----AT-AA-TGC-ACATTGGACATTCAGGGACT--ATAGAA-TCTA---ATTACCG------GGTCTTCGCTGCGC----GGCTAC---A--GGAT-CAGA--T-----TG------GGTAT----C-GCATAT-TT-AGTTTTG--TAGT-TTAGATTTTTTAAAAA--TAAAAC-TAC-TT---AATAGA--CAACT---------ACAATATTCA-----C-AGA-ACTTAT-TATCAACA-GCCTT---G-TTCAGACACTATGcttattgtccaactcttccatgccactgtgacattgacctttgatcttttactgatctctcaaaaatatcacaacaagcgatgttcccttctttagtgtcaatatcccttatgtccaaatttttgtatgatagaatatcaaacggtattatttagagttgcgctttattagacaccaatttttaaactcagtcaaaccttccatgcaccaccttagagtgaagagatgtgatactttcctggtatgattagatttccggtaatgatgcaccggggatgaatccgggtaatgttattatcataacaattcccgttcgtggttgacaaaattggatgatgttctacaaaaagcagaccggataaagacacaaattatgtcgatctggtagcgtcaaaagaaatataaaaatcaacaaaatgaatcttttttgtttttttagacacgacaccgcgccatattttctttctaaagaatgccgatacattaaactattttagccttctggattcgtttttgctatgaactccataatggcaattatttacgttggtgatttttttaaaaactctgattactagttattacccttttgtattcaaaaatgttatgattaagaaataatgcacattggacattcagggactatagaatctaattaccgggtcttcgctgcgcggctacaggatcagattgggtatcgcatatttagttttgtagtttagattttttaaaaataaaactacttaatagacaactacaatattcacagaacttattatcaacagccttgttcagacactatg
gi|10 : ttaaggtgtttctgttggtgagattggacctcctctctttcattggaatttaaaactttttttttaaacataacccattcttgaactcatttcatcttgaccaaagaaaggttaattccaaaacaactgaaaggaaaaaggggtatgttgtgacaggactttaaagagttacagcccatcaagtttgatatcccttttgctctgaaagttaaaactttttttgtcgtttgaaagggatcaccattttccaccaagtaaacacaatagaaattaaaacaaatattcattgacagccttttagagaattaaatctcattatcttttatttcaatgaaaaattaattcgattaatttataattttttataacttttacataatttttttttcaaatttatttctagaaatagaataacgagattatctcagcatatattaggagcttggacgaaaaaaatgaccaaatttttatgtcaaatttttgatcaagaaaattcaatattattaggcggaagagtccttgaattaaaacttggtttcgtggaaatgccaatggcagattcgaaacaacttaggttactactttgtggctcatttttgatttagagggtgaaaaggaaaaaaagttcggtggggtcatattagtttgtgcatttgggaacaaagtttttatgggataacctatttttgtgtcccgcacccgccttctcatttcttgatcataaatttcaacatcggattacaaatatatgacttttgtattaaaatggtattctttcctggtgaatttctaattatttcaggcaaattttatggtatttattttaatcatataactacttacatgttctcttaaaaaggataaataattgtgtaaacaatactcaattcaatgatataaattcatttatcactttcgagaatacatgttgaaactaaaatgccacttaaagttttaacttattgtccaactcttccatgccactgtgacattgacctttgatcttttactgatctctcaaaaatatcacaacaagcgatgttcccttctttagtgtcaatatcccttatgtCTCATTTT---------TAATGA-----AAAAAA-------ATGTC-AG-GG----G-------TA-G-T--GTGCG-TTGG-AAC-AAAGTTT---TG----AACC-A-TTTTGAG--TGCC--CATCC-CCTTTTC----ATTT-T-G-TCAT-AAATT----TCAAC-TC-AATA-ACAATAT-T-CAA--T-TTGT-TAT----AAAA----T-GCATAT-TC-TTC-----AAT---TCATAT-TTA-------CAA-ATCATAT-G-TATTTA-TT-CCATCGTATAA
gi|11 : tcTTAAGGATGTT-CT-CTGGT-G-GTAT--T-AT-TTT-----TTT-AAAGT-AAT--A--AAAAAT--AAT------A-AT-AACCCAT-TTT----AACTTATT-CAT-CT-TGATCA--GAAAGAC-AATTTAAAC-A-CAC-------GA-A---TA---AG-------------TAT--AT-CAGTG-T-GGT-ACATGTAGTCAAA-GTGTT-ACAGCTCCT-GAAAG-TTA----GCCCTTTGCT--GAA-AG-TTA---TATATATTTT---C-TTTgac
gi|12 : gTTTTAA-C--AG-C------CAA--C-TTTCAT-GC-GACCATAATGA----AGATATATC-CACTT-C--CT------GGT-AT-AT---ATT--CT-GT-TAT-GAT-GAC-ACT----ATGACTCAT-CGC-----ATT--T--TT--TGT--------CTGT----G--ATT-A-CAAA-TT-AA-ATG-T-AG-GT-ACAAAACGA--GCAG--AAACG
gi|13 : agTTAAGGATGTT-CT-CTGCT-T-TTAT--GAAG-TTT-----TTT-CA--A-AATAAT--AAACTT--TTT-----AA-AT-AACCCA---TT--ATAACTCATT-CAT-CT-TCACCA--GGAAGGC-AATTTAAAC-A-CAA-------GAGA---AG---GG-------------TGC--AT-TGGTG-T-CG--AC-T----TC-CA-GAGTT-ACAGGCCCT-ggaaacag
gi|14 : TTGAAA---ATCA-CCAT--T-TTCCAC-AAGAAA--CACAATG-----T-AAACCAAATA-------ATC---------------------------TCCA-TTATCTTTTCGTC----CA-TGAA-AA-TCAGT-CA--T-AA--TTTATAA-TT------TT-G--AT--AACA--TTTACCCAA-AAA--------TGTTCAAC---AATT-CTTT-AA-------T--AATA
gi|15 : c---AATT-CTAG-AAATACACGT--AATAAC--TGATT-ATCT-AG-CAT-TATT--GG---------AGAA--AAC--TG--GCACAAA-TGTTAAGT---C----ATATTTT--GTC---------A-AAAT-TTCA---AT-CTA----GC---t
gi|16 : tttgtcAAGGATGTT-CT-CTGGT-GAG-AT--G-AC-TTT-----TTT-CATTC-GAT--T--AAACTT--TTTAAA--AA-AT-AACCCAT-CTTA-A-AACTCATT-CAT-CT-TGACCA--G--AGGC-AATTCAAA
gi|17 : ta-CACGACCGCCGCGCCA---------TAT-TTCT--CT-------------AA-------------AT---------T-------TGATAGATCTATTTTA--CCCCGG-GA----TT-CGTTTT-GATGACTAAA---TTC----------ATTGTT-TA--CGTTGGT--GATTTTTT-
gi|18 : AT-CT-TGATCA--GAAAGACAA-TTTAAAC-A-CAA-------GT-A---AA---GGATACATGTATATATATAAGT-AAGTG-T-GG--AC-T----TTAAAAGAGTT-ACCGCCCCT-CAAAG-
gi|2 : TTAAGGATGTT-CT-CTGGTTGAG-AT--G-AAATTT-----TTT-CAT-G-AAT--TTTAAACTT--TTTT----AA-AT-AACCCAT-CTT--A-A-CTCATT-CAT-CTATGACCA--GAAAGGCCAATTCAAAC-A-CAA-------GA-A---AAA--GG-------------TAT--GT-TAGTG-C-GG--AC-T----TTAAA-GAGTT-ACAGCCCCT-CAAAG-TTA-----CCCTTTGCT--GAA-AG--TA---C---TTTTTT---CTTTTTAAAA---ATCA-CCATC-T-TTCCAC-AAG--AA-CACAATA-----T-AAAACAAATA-------TTCAT-GACAGA---------A----AAT-CTCA-TTATC--TTA-TT----CA-TGAA-AA-TTAAT-CA--TGAA--TTTATAATTT------TT-T--ATTAAACT--TTTAC---ATTAA------TTTTTTCAAA---AATT-CTAA-AA-------T--AATAAC--AGATT-ATCT-AG-CAT-TATTG-GG---------GGAACGAAAA-CGACACACAAA-TT---ACT---CGCTAAAATTTT--GTCCACGCAAAAA-AAAA-ATAAAACAT-ATA----GC---AGAGTTCCTTGAATT-AAAC-T---TTTTTTG--ATCGAACACTTTGCCAAAGCC-ACAG-ATTACCATCATAAA-A-CA--------TATCTT--CTT---GCTCATTTT---------GAATGA-----AAAAAAAAAACACA-GTT-GA-GGCCAAG-------CAGG-TATGTGCA-TT-GGAAC-AAAGATT---TG----AA-CCA--TTTGTGA-T-CC--CACCC-CCCTCTCTCCAATCT-TTG-TCATAAAATTTATATCAACATC-AATTAACAATAA-TATGA--TGCTGTCCATACTAAAA-----TGATATTTCTCACTC-----AATCA-TCATATAATA-------CAA-ATTTAA----TATTTA-TTATAATCATATAACC------AT--ACTGATC----AAAAGG--TAAAAAAT-AAA-AATATTGAATACTTACAA-A--CAA---ATA----ATAA-TTCAAATTAATATC--ACT---GAAGGAA-TACAATAGTGG-AAAC--AAATTTG-CAC-AAAC---TTAA
gi|2 : CCAAATTTTTGTTTCCGAATAGATAACAA----AAA-AAGTACCT---T-GAG-----TGTCCTT----C-GAACAC-AATCCTTTAAC--AG-TAATAACCAA--CATTCCATCGCAAAACAC--GGA----AGAGA-----TACTT-CAACTGACCAAGGT-A--AT--GATTTCAC-GGAAAT-GATCGGCAACCA---ATGA---AT-C-C-----ATG--ATCTT--TATAACCATTCCTGT----GCCGTT-A-CAAACAT-GGAATG-TGAT-CCAACAA----G--ACAGAAAACCGATAAGAGA-AACCAAATTAT--TGA-TCTAGTAGGCGC--AAAGAAATATACATGTTAAAATCAACGAAATGA-TCTGTTGTCATTT-----G-CACGAACGCC-CACCGCCCAACCAATATATTCT--CTAAACCTGACGACCAA------------TATCAAACTCTAT-------T------------TTA--CCTCGGCGAAACCTTACG-TTT-GATGAATAAAACTTTC----------ATGATTATACCCGCTTGTAGGAACTTTT-ATACCAAAACCTCTGAT-ATTA---GAATTACACATACCATATATTG-ATTCAAAAACCTG--ATGA-TTACAA-ATACCATAAA-TGCAA--TTGAACAT-CAAGGACTCAATAGAA-AACA---TCAACTA---CCGGGCTTCC-TG-CGCTCAGG----C---AATGGATACAGAATCC---TTGAGAAGAGGTATCAGAC-A-ATAT-TTCAGTTT-G--TAGA-------TCTTTAGAAATCTAAAACTTACGTTCCAAAT-AGAAC-ACCAATCCTACAACAA-ATTCACAAT-CAAGA-AC-TACCCATCAACA-G-CTT-GGGTTTCAGCCcattgtcccaatttcatgcccctgtgacattgacctttgaactttctgacatcccataaatattaacaagtgacaatgtcccttctctagtgcgtatcgatatgtctccaaatttttgtttccgaatagataacaaaaaaagtaccttgagtgtccttcgaacacaatcctttaacagtaataaccaacattccatcgcaaaacacggaagagatacttcaactgaccaaggtaatgatttcacggaaatgatcggcaaccaatgaatccatgatctttataaccattcctgtgccgttacaaacatggaatgtgatccaacaagacagaaaaccgataagagaaaccaaattattgatctagtaggcgcaaagaaatatacatgttaaaatcaacgaaatgatctgttgtcatttgcacgaacgcccaccgcccaaccaatatattctctaaacctgacgaccaatatcaaactctattttacctcggcgaaaccttacgtttgatgaataaaactttcatgattatacccgcttgtaggaacttttataccaaaacctctgatattagaattacacataccatatattgattcaaaaacctgatgattacaaataccataaatgcaattgaacatcaaggactcaatagaaaacatcaactaccgggcttcctgcgctcaggcaatggatacagaatccttgagaagaggtatcagacaatatttcagtttgtagatctttagaaatctaaaacttacgttccaaatagaacaccaatcctacaacaaattcacaatcaagaactacccatcaacagcttgggtttcagcctaaccggccataa
gi|20 : ttaaggatgttctctggttgagatgaaattttttcatgaattttaaacttttttaaataacccatcttaactcattcatctatgaccagaaaggccaattcaaacacaagaaaaaggtatgttagtgcggactttaaagagttacagcccctcaaagttaccctttgctgaaagtacttttttctttttaaaaatcaccatctttccacaagaacacaatataaaacaaatattcatgacagaaaatctcattatcttattcatgaaaattaatcatgaatttataattttttattaaacttttacattaattttttcaaaaattctaaaataataacagattatctagcattattgggggaacgaaaacgacacacaaattactcgctaaaattttgtccacgcaaaaaaaaaataaaacatatagcagagttccttgaattaaactttttttgatcgaacactttgccaaagccacagattaccatcataaaacatatcttcttgctcattttgaatgaaaaaaaaaaacacagttgaggccaagcaggtatgtgcattggaacaaagatttgaaccatttgtgatcccacccccctctctccaatctttgtcataaaatttatatcaacatcaattaacaataatatgatgctgtccatactaaaatgatatttctcactcaatcatcatataatacaaatttaatatttattataatcatataaccatactgatcaaaaggtaaaaaataaaaatattgaatacttacaaacaaataataattcaaattaatatcactgaaggaatacaatagtggaaacaaatttgcacaaacttaacattgtcccaatttcatgcccctgtgacattgacctttgaactttctgacatcccataaatattaacaagtgacaatgtcccttctctagtgcgtatcgatatgtctTTCAC--T-C-AGA-AC-TA--TATCAACA-GCCTTGGGG-TTCAGCCATTA-GTATGCtaaccggccataa
gi|3 : TTAAGGATGTT-CT-CTGGT------------T-TTT-----TTT-C-TTG-AAT--T--AAACTT--TTT-----GA-AT-AACCCAT-TTT--A-AACTCATT-CAT-CT-TGACCA--GAACGGCAAATTCAAAC-A-CAA-------GA-A---AA---AG-------------TAT--GT-TAGTG-C-GG--AC-C----TTAAA-GAGTT-ACAGCCCCT-GAAAG-TTA----CCCCTTTGCT--GAA-AG-TTA---C---TTTTTT---C-TTTTAAAA---CTTA-CCAT--T-TTCCAC-AAGAAAA-CACAATA-----T-AAAACAAATA-------TTCAT-GACA-T---------AAT--AAT-TTCA-TTATCTTTTATTT----CA-TGAA-AA-TTAAT-CA--T-AA--TTTATAA--T------TT-T--AT--AACT--TTT-C---A-TAA-TT---TTTTTTCAAA---AATT-CTAG--A-------T--AATAAC--AGATT-ATAT-AG-CAT-TAT---GG---------GGAA--AATA-TG--ACCCAAA-TTTTAAGT---C----AAA-TTT--GTC--------AA-AAAA-TCCA---AT-CTA----GCA--AGAGTTTC-TGAATT-AAAC-----TTTTGTG--A---AA----TTGCTAC---T-GTAG-ATT-------TGAA-ATCA--------TA--TT--TTT---GCTCA-TTT---------GAATG------AAAAAA-------A-GTT-GG-GG----G-------TA-G---TGTGCA-TTGGGAAC-AAAGTTT---TG----AACCCA-TTTT-TG--T-CC--CACCC-CCTTC-C----ATCT-TTG-TCAT-AAATT----TC-ACATC-AATT-ACAATAT-GATGA--T-TTGT-TAT----AAA-----T--TATTT-CC-TTC-----AAT---TCATAT-TTA-------CAA-ATTTTAT-G-TATTTA-TC-TAATTATATAACCA-----ATCAACTG-TC--TAAAAAGG--T-----AT-AAATAAT-TTG--TA--TATGA-A--CAA---A-A----TTAATTCC--ATT--TATC--ACT---GAA--AATTAC-GTGGTGGAAAAC--AAG--TG--AC-TAAA---TTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAATTTTGTTTT--GAATAGA-----A----AAACAAGTA-CT---T-GAG----TTATCCTT----A-AAAACC-AATTTTT-AAC--AGTT------CAA--C-TTCCAT-GC-ACCCA-TTGGA----AGAG-TGTG-TACTT-C--CT------GGT----AT--GGTTT-TC-G--AAA-GAT--GC-ACC----ATG----AT-C-C-----ATG--A--TT--AAT-AC-ATTCCC-T----G--GTT-A-CAAA-AT-GG-ATG-T-AT-CT-ACAA----A--GCAC--AACCGATAAG-GA-A--CAAATT-T--TGA-TCTAGTA-GCGC--AAAGAAATATA------AAAATCAACAAAGTGA-TCC-TTATCG---TTTTAG-CATGAACGCCGCGCCG---------CATATTCT--CT-------------AA------------CAT---------T-------T------------TTA--CCTCGG-GA----TT-CATTTT-GATGAATAAA---TTC----------ATTGTT-TA--CATTGGT--GATTTTTT-A----AAAA-CTCTGAT-AC---TTGA--------TACCCT---TTTTATTC-AAAA--TG--ATGAGTTAAAA-A----AT-AATTGC-A--CTGGACAT-CAGGGACT------AA-T-TA---TT--CCG---AAAGGCTTTC-CT-CGC----G----C---A--GGAT-CAGA--TCAATTTG------GGGAT----C-G-ATAT-TT-AGTTT-G--TAGATTT----TTTTTAAATA--TAAAA--TACTTT---AAT-GG--C-ACCTT-------ACAA-ATTCAC--T-C-AGT-AC-TA--TATCAACAGGCCTT-GGG-TTCAGCCACTACGTTTGC
gi|4 : TTAAGGATGTT-CT-TTGGT-GAG-AT--G-AAATTT-----TTT-CATTG-AAT--T--AAACTTCCTTT-----GA-ATTAACCCAT-CTCTGG-AACTCATT-CATTCT-TGACCA--GAAAGGCAATTCCAAACCATCAA-------GA-ATAAGA---GG-------------TAT--GTGTAGTG-C-GGGGAC-TG---TTAAAAGAGTTGACAGTCCCTTCAAGGGTTA----CCC-TTTGCCTGGAATAGCTTA---C---TTTTT----C-TTTGGATAT--ATCAGCCATATTATTCCAC-AAGAAAATCA-AATA-----TCAAAACAAATACCACCCATTCAT-GACAGT---------AAT--AATCTTCAATTATCTAGTATCTTCCTCACTGAATAA-TTAAT-C---T-AACTTTTATAA-TTATGATATT-T--AT--AGCTGCTTTAC---A-TTA-TTGACTTTTTCCAAA---AAATACGAC-AA-------T--AATAACTCAGATTTATCT-AGGCAT-TATTGTGG---------GGAA--AACAATG--ACACAAA-TTTTAAGTTGTC----AAATTTT--GGC--------AA-AAAAGTTCA---AT-CTA----GC---AGAGTTCCGTG-ATT-AAACTT---TTTTGTGGAA---AA----TTGATAAT--C-GCAGAATT-------TGAATG-AA--------T---TT--TTT---GCTCA--TT---------GAATG-------AAAAA-------A-GTT-AG-GG----A-------TA-G---CGTGCA-TT-GGAACAAAAGGTT---TG----AACCAT-TTTTGTGTCT-CC--CACCC-CTTTCTC----ATTT-TT--TCAT-AAATT----TCAAC-TC-AAAT-ACAATA--TATGA--T-TTGTATAT----AAA-----T-ATATTT-TC-TTC-----AATTTATCATAT-TTA-------CAATTTTTTAT-GATATTTA-TT-TAATCATATA---A-----AT--ACTG-TCT-TAAAAAGGTCT-----ATCAAAT-AT-TTGTATA--TACAA-A--CAA---T-A----ATAA-TTA--ATT--TATTAAACT---GAAGAAA-TAC-A--GTGAAA
gi|5 : AAGGATGTT-CT-CTGGT-G-GTGT--G-AA-TTT-----TTTTCAAAG-AAA--T--AAACTC--TTT-----GA-AT-AACGCAT-TTT--A-A-CTCATT-CAT-CT-TGACCA--GAAAGGCAA-TTTAAAA-A-CAA--------A-A---AA---GG-------------TAT--GT-CAGTA-T-GA--AC-T----TTAAA-GAGAT-ACAGCTCCT-CAAAG-TTT----CCCCTTTGCT--GAA-AG-TTA---C---TTTTTT---T-TTTCGAAA---ATCA-CCAT--T-TTCTAC-AA-AAAA-CACAATA-----T-AAAACAAATA-------TT-AT-GACA-A---------AAT--AATATTCA-TTATCATCTATTT----CA-TGAA-AA-TTAAT-CA--T-AA--CGTATAA-TT------TT-TACAT--AAAT--TTT
gi|6 : cCCAA--TTTTGTTT--GAATAGA-----A----TAA-AAGTA--T---T-GAGGGGGCTGTCCTT----AAGAAACCCAATTTTGAAAC--AG-T------CAA--C-TTCTAT-GC-ACCCACTTGGA----AGAGATGTG-CACTT-C--CT------GGTAA--AT--GATTTTCCGG--AATGGAT-GGC-ACC----ATGA---ATCC-C-----ATG--C--TT--CTTAGAATTTTCTGT----G--GTT-ACCAAA-AT-GG-ATG-T-AT-CT-ACAAC---A--GC-G--AACCGATAAC-AA-A---AAATTAA--TGAGTCTAGTA-GCGC--AAAGAAgtcaaga
gi|7 : tattctattttaatctTC-AATT-ACAATAT----GA--T-TTGT-TAT----AAAATGCAT-ATATAT-TC-TTC-----AAT---TCATAT-TTA-------AAA-ATTTTAT-G-TATTTA-TT-TTATCACA-AA--A-----AT--ACTG-TCTAAAAAAAAG--T-----AT-AA--AATATTG--TA--CACAA-A--C-------A----AT-ATTTC--ATT--TATC--ACT---GAA-GAA-TAC-AT-GTGG-AAAC--ATA--TGCCAC-TAAA---TTAA
gi|8 : GTA-CT---T-GAG----TTATCATT----A-GAAACC-AATTTT--AAC--AG-T------CAA--C-TTCCAT-GC-ACCCACTTGGA----AGATATGTG-TACTT-C--CT------GGT-A---T--GATTTCCC-G--AAT-GAT-GAC-ACC----ATGA---AT-C-C-----ATA--A--TT--TATAACATTCCCTGT----G--GTT-A-CAAA-AT-GG-ATG-T-AT-CT-ACAA----A--GCAG--AACCGATAAG-AA-A--CAAATCAT--TGA-TCTAGTA-GCGC--AAAGAAACAT-------AAAATCAACcattgtccaattccatgcactgtgacattgacctttgaccttctgactccaaaattcactggtattaagccaatgcc
gi|9 : tcttatgtccaaatttggtttAAA--TG--ATGA-TTAAAAAA----AT-AA-TGC-A--TTGGACAT-CAGGGACT--ATAGAATTCTAAATTTAGCCGAGAAGAAGCTTTC-CT--GC----G----CTGGA--TGAT-CAGA--T----TGG------GGTAT----CAG-ATATGTT-AGTTT-GGTTAGA--T----TTTTTAAAAA--TAAAA--TAC-TT---AA--------A-----------ACAA-AATCAC--TCC-AGACAC-TA--TATCAACA-TCTTT-GGG-TTCAGC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TAATGACCTTTTAAACCTAGGAATGACATTTACAGTGCTTATATACACAGGCACTTGACGTTTTAAATATATTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333333333 11111 1111 11111 333333 1111 1 1111111 111 2222222222222 11 1111 1 11111 11 1111111 111 111 11 11111 2222222 4444444444444444 1 1111 1 111 111111 1111 111 333333 111 2222222222 11 111 333333333 11 11 22222222 11 222222222 111 1111 222 2 1 33333 222222222222 33333 1 4444444444444444444444444444 11 111 1 333333333 333333 2222222 44444444444444444444 1 111 1111 1111 11 11 1111 1111 1 1111 1 2222 33333333 11111 222 2222222 22222222 11 111 33333333 1 33 11 11 3333333333 1 11 11 11 111 11 1111 11 11 11 1 1 111 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 3333333333 1 111111 22222 222222 11 11111111 1111 111111 2222 22 2222 111 11111 11111 11111 1111 2222222 11 11 11 3333333 1 1 1111 1 444444444 11 888888888888888888888888888888888888888888888888888888888888 11 1 2222 1 1 111 4444444444 1 11 11 222222 1 1 6666666666666666 222 11 11 1 222222 1 1 1111 1 111 333333333333333333333 11111 4444444444444444 1 5555555555555555 22222222 1 1 1 11 4444444 11 22 8888888888888888888888888888 1 1111 11 1
lowQualScore : 5 5 4444444444444 22222 5 3333 44444 66 000000 5 5 77 7777 3 5 4 4 66 2 4 5 5 6666666 5 888 333 7777777777777 66 5 888 11 5 5555 0 5 5 5 66666 1 88 6 6 6666666 111 6 888 6 55 6 6 3 6 66666 6 1111111 6 7777777777777777 3 6 3 3 4444 3 6 6 6 000 6 99 6 999999 0000 99 99 0 444 8 333333 111 6 77 1111111111 99 8 8 8 8 777 222222222 11 999 11 5 8 0 11111111 0 11 999999999 8 8 444 8 7777 222 0 3 0 00000 999999999999 55555 0 9999999999999999999999999999 33 777 0 222222222 000000 6666666 8 8 8 99999999999999999999 8 0 8 1 444 7777 3333 99 8 11 8 0 7777 8 888 8 7777 0 0 6 6 6666 99 6 3 3333 11111111 6 6 66666 000 6 1111111 6 777 6 6 99999999 11 8 999 11111111 8 777 5 66 11 8 11 0 1111111111 0 5 11 11 11 444 55 8 1111 88 33 33 5 0 777 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3 33 3 7777777777 0 666666 8 00000 000000 8 00 99 99999999 99 6 6 6 44 4444 6 6 99 999999 1111 99 5 6 22 6 888 6 0000 111 6 6 66666 77777 999 44444 0 4444 99 6 6 6 6 6 6 6 6 6 3333333 99 8 8 11 0 11 8 8 11 2222222 0 3 3 1 2222 0 9 2 000000000 9 33 222222222222222222222222222222222222222222222222222222222222 33 0 1111 0 3 0 2 777 3333333333 0 33 33 999999 3 3 5555555555555555 1 333 7 7 33 33 0 222222 0 0 4444 0 777 222222222222222222222 33333 4444444444444444 0 3333333333333333 55555555 0 0 0 33 3333333 33 55 2222222222222222222222222222 0 4444 8 8 8 99 8 8 8 2 1
lowQualScore : . . ............. ..... . .... ..... .. ...... . . .. .... . . . . .. . . . . ....... . ... ... ............. .. . ... .. . .... . . . . ..... . .. . . ....... ... . ... . .. . . . . ..... . ....... . ................ . . . . .... . . . . ... . .. . ...... .... .. .. . ... . ...... ... . .. .......... .. . . . . ... ......... .. ... .. . . . ........ . .. ......... . . ... . .... ... . . . ..... ............ ..... . ............................ .. ... . ......... ...... ....... . . . .................... . . . . ... .... .... .. . .. . . .... . ... . .... . . . . .... .. . . .... ........ . . ..... ... . ....... . ... . . ........ .. . ... ........ . ... . .. .. . .. . .......... . . .. .. .. ... .. . .... .. .. .. . . ... ........................................................................................... . .. . .......... . ...... . ..... ...... . .. .. ........ .. . . . .. .... . . .. ...... .... .. . . .. . ... . .... ... . . ..... ..... ... ..... . .... .. . . . . . . . . . ....... .. . . .. . .. . . .. ....... . . . . .... . . . ......... . .. ............................................................ .. . .... . . . . ... .......... . .. .. ...... . . ................ . ... . . .. .. . ...... . . .... . ... ..................... ..... ................ . ................ ........ . . . .. ....... .. .. ............................ . .... . . . .. . . . . .
lowQualScore : 0 0 5555555555555 55555 0 2222 99999 99 555555 0 0 22 8888 2 0 4 4 11 9 8 0 0 2222222 0 888 888 5555555555555 99 0 000 99 0 6666 0 0 0 7 77777 0 33 7 7 0000000 777 7 333 7 88 7 7 5 7 77777 7 7777777 7 2222222222222222 3 7 5 2 2222 3 7 7 7 888 7 22 7 222222 8888 22 22 8 000 0 222222 777 7 77 8888888888 00 0 0 0 0 000 000000000 00 888 00 6 0 8 00000000 8 00 888888888 0 0 000 0 0000 000 0 2 0 88888 222222222222 55555 0 5555555555555555555555555555 88 555 6 000000000 666666 0000000 0 0 0 66666666666666666666 0 0 0 0 000 0000 2222 00 0 00 0 8 0000 0 888 0 0000 8 6 7 7 5555 22 7 3 3333 88888888 7 7 77777 888 7 7777777 7 555 7 7 00000000 00 0 666 88888888 0 222 8 44 00 0 00 8 0000000000 8 8 00 00 00 000 88 0 0000 66 88 88 0 0 555 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2 88 2 2222222222 0 222222 0 88888 888888 0 77 22 33333333 22 7 7 7 55 2222 7 7 22 222222 7777 22 2 7 55 7 777 7 8888 777 7 7 77777 77777 555 00000 7 2222 22 7 7 7 7 7 7 7 7 7 5555555 22 0 0 00 8 00 0 0 00 0000000 7 3 3 0 7777 0 2 5 000000000 8 88 555555555555555555555555555555555555555555555555555555555555 88 0 2222 0 2 0 5 555 8888888888 0 88 88 333333 3 3 0000000000000000 0 333 3 3 88 88 0 222222 0 0 8888 0 000 222222222222222222222 55555 8888888888888888 0 8888888888888888 22222222 0 0 0 88 8888888 88 00 8888888888888888888888888888 0 8888 0 0 0 00 0 0 0 0 0
consensus : TTAAGGATGTT-CT-CTGGT-GAGTAT--GAN-TTT-----TTT-CATTG-AAT--T--AAACTT--TTT-----GA-AT-AACCCAT-CTT--A-AACTCATT-CAT-CT-TGACCA--GAAAGGCAAATTCAAAC-A-CAA-------GA-A---AA---GG-------------TAT--GT-TAGTG-C-GG--AC-T----TTAAA-GAGTT-ACAGCCCCT-CAAAG-TTA----CCCCTTTGCT--GAA-AG-TTA---C---TTTTTT---C-TTTTGAAA---ATCA-CCAT--T-TTCCAC-AAGAAAA-CACAATA-----T-AAAACAAATA-------TTCAT-GACAGN---------AAT--AAT-TTCA-TTATCTTTTATTT----CA-TGAA-AA-TTAAT-CA--T-AA--TTTATAA-TT------TT-T--AT--AACT--TTTAC---A-TAA-TT---TTTTTTCAAA---AATT-CTAG-AA-------T--AATAAC--AGATT-ATCT-AG-CAT-TATTG-GG---------GGAA--AANA-TG--ACACAAA-TTTTAAGT---C----AAATTTT--GTC--------AA-AAAA-TTCA---AT-CTA----GC---AGAGTTCC-TGAATT-AAAC-T---TTTTGTG--A---AA----TTGCCAA---C-GCAG-ATT-------TGAA-A-CA--------TA--TT--TTT---GCTCATTTT---------GAATGA-----AAAAAA-------A-GTT-GG-GG----G-------TA-G-T-TGTGCA-TTGGGAAC-AAAGTTT---TG----AACCCA-TTTTGTG--T-CC--CACCC-CCTTCTC----ATTT-TTG-TCAT-AAATT----TCAACATC-AATT-ACAATAT-TATGA--T-TTGT-TAT----AAA-----T-ATATTT-TC-TTC-----AAT---TCATAT-TTA-------CAA-ATTTTAT-G-TATTTA-TT-TAATCATATAACCA-----AT--ACTG-TCT-TAAAAAGG--T-----AT-AAATAATATTG-ATA--TACAA-A--CAA---A-A----ATAATTTC--ATT--TATC--ACT---GAAGGAA-TAC-ATGGTGGAAAAC--AAA--TGCCAC-TAAA---TTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAATTTTTGTTT--GAATAGA-----A----AAA-AAGTA-CT---T-GAG----TTGTCCTT----A-GAAACC-AATTTTTAAAC--AG-T------CAA--C-TTCCAT-GC-ACCCACTTGGA----AGAGATGTG-TACTT-C--CT------GGT-A--AT--GATTTCCC-G--AAT-GAT-GGC-ACC----ATGA---AT-C-C-----ATG--A--TT--TATAACAATTCCCGT----G--GTT-A-CAAA-AT-GG-ATG-T-AT-CT-ACAA----A--GCAG--AACCGATAAG-GA-A--CAAATTAT--TGA-TCTAGTA-GCGC--AAAGAAATATA------AAAATCAACGAAATGA-TCT-TTNTCGTTTTTTTAG-CACGAACGCCGCGCCG---------TATATTCT--CT-------------AA------------CAT---------T-------T------------TTA--CCTCGG-GA----TT-CGTTTT-GATGAATAAA---TTC----------ATTGTT-TA--CGTTGGT--GATTTTTT-A----AAAA-CTCTGAT-ACTA-TTGAATTAC---TACCNT---TTGTATTCAAAAA--TG--ATGA-TTAAAA-A----AT-AA-TGC-A--TTGGACAT-CAGGGACT--ATAGAA-TCTA---TTAACCG---ANAGGCTTTC-CT-CGC----G----C---A--GGAT-CAGA--TC---TTG------GGTAT----C-G-ATAT-TT-AGTTT-G--TAGA-TT----TTTTTAAAAA--TAAAAC-TAC-TT---AAT-GG--C-ACC---------ACAA-ATTCAC--T-C-AGA-AC-TA--TATCAACA-GCCTT-GGG-TTCAGCCACTACGTNTGC
Reference ( family-2905 ) : TTAAGGATGTT-CT-CTGGT-GAGTAT--GAN-TTT-----TTT-CATTG-AAT--T--AAACTT--TTT-----GA-AT-AACCCAT-CTT--A-AACTCATT-CAT-CT-TGACCA--GAAAGGCAAATTCAAAC-A-CAA-------GA-A---AA---GG-------------TAT--GT-TAGTG-C-GG--AC-T----TTAAA-GAGTT-ACAGCCCCT-CAAAG-TTA----CCCCTTTGCT--GAA-AG-TTA---C---TTTTTT---C-TTTTGAAA---ATCA-CCAT--T-TTCCAC-AAGAAAA-CACAATA-----T-AAAACAAATA-------TTCAT-GACAGN---------AAT--AAT-TTCA-TTATCTTTTATTT----CA-TGAA-AA-TTAAT-CA--T-AA--TTTATAA-TT------TT-T--AT--AACT--TTTAC---A-TAA-TT---TTTTTTCAAA---AATT-CTAG-AA-------T--AATAAC--AGATT-ATCT-AG-CAT-TATTG-GG---------GGAA--AANA-TG--ACACAAA-TTTTAAGT---C----AAATTTT--GTC--------AA-AAAA-TTCA---AT-CTA----GC---AGAGTTCC-TGAATT-AAAC-T---TTTTGTG--A---AA----TTGCCAA---C-GCAG-ATT-------TGAA-A-CA--------TA--TT--TTT---GCTCATTTT---------GAATGA-----AAAAAA-------A-GTT-GG-GG----G-------TA-G-T-TGTGCA-TTGGGAAC-AAAGTTT---TG----AACCCA-TTTTGTG--T-CC--CACCC-CCTTCTC----ATTT-TTG-TCAT-AAATT----TCAACATC-AATT-ACAATAT-TATGA--T-TTGT-TAT----AAA-----T-ATATTT-TC-TTC-----AAT---TCATAT-TTA-------CAA-ATTTTAT-G-TATTTA-TT-TAATCATATAACCA-----AT--ACTG-TCT-TAAAAAGG--T-----AT-AAATAATATTG-ATA--TACAA-A--CAA---A-A----ATAATTTC--ATT--TATC--ACT---GAAGGAA-TAC-ATGGTGGAAAAC--AAA--TGCCAC-TAAA---TTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAATTTTTGTTT--GAATAGA-----A----AAA-AAGTA-CT---T-GAG----TTGTCCTT----A-GAAACC-AATTTTTAAAC--AG-T------CAA--C-TTCCAT-GC-ACCCACTTGGA----AGAGATGTG-TACTT-C--CT------GGT-A--AT--GATTTCCC-G--AAT-GAT-GGC-ACC----ATGA---AT-C-C-----ATG--A--TT--TATAACAATTCCCGT----G--GTT-A-CAAA-AT-GG-ATG-T-AT-CT-ACAA----A--GCAG--AACCGATAAG-GA-A--CAAATTAT--TGA-TCTAGTA-GCGC--AAAGAAATATA------AAAATCAACGAAATGA-TCT-TTNTCGTTTTTTTAG-CACGAACGCCGCGCCG---------TATATTCT--CT-------------AA------------CAT---------T-------T------------TTA--CCTCGG-GA----TT-CGTTTT-GATGAATAAA---TTC----------ATTGTT-TA--CGTTGGT--GATTTTTT-A----AAAA-CTCTGAT-ACTA-TTGAATTAC---TACCNT---TTGTATTCAAAAA--TG--ATGA-TTAAAA-A----AT-AA-TGC-A--TTGGACAT-CAGGGACT--ATAGAA-TCTA---TTAACCG---ANAGGCTTTC-CT-CGC----G----C---A--GGAT-CAGA--TC---TTG------GGTAT----C-G-ATAT-TT-AGTTT-G--TAGA-TT----TTTTTAAAAA--TAAAAC-TAC-TT---AAT-GG--C-ACC---------ACAA-ATTCAC--T-C-AGA-AC-TA--TATCAACA-GCCTT-GGG-TTCAGCCACTACGTNTGC
gi|1 : TTAAGG-TGTTTCTGTTGGT-GAG-ATTGGAC-CTCCTCTCTTT-CATTGGAAT--TTAAAACTT--TTTTTTTAAACAT-AACCCATTCTT--G-AACTCATTTCAT-CT-TGACCAAAGAAAGGTTAATTCCAAA-A-CAACTGAAAGGA-A---AAAGGGG-------------TAT--GT-T-GTGACAGG--AC-T----TTAAA-GAGTT-ACAGCCCAT-CAAGT-TTGATATCCCTTTTGCTCTGAA-AG-TTAAAAC---TTTTTTTGTC-GTTTGAAAGGGATCA-CCAT--T-TTCCACCAAGTAAA-CACAATAGAAATT-AAAACAAATA-------TTCATTGACAGCCTTTTAGAGAATTAAAT-CTCA-TTATCTTTTATTT----CAATGAA-AAATTAATTCGATT-AA--TTTATAA-TT------TTTT--AT--AACT--TTTAC---A-TAATTT---TTTTTTCAAATTTATTT-CTAGAAA-------TAGAATAACG-AGATT-ATCTCAG-CATATATTA-GGAGCTTGGACGAAA--AAAA-TG--AC-CAAATTTTTATGT---C----AAATTTTTGATC--------AAGAAAA-TTCA---ATATTATTAGGCGGAAGAGTCCT-TGAATTAAAAC-TTGGTTTCGTG--G---AA----ATGCCAA---TGGCAG-ATT-------CGAA-A-CAACTTAGGTTA--CTACTTTGTGGCTCATTTTTGATTTAGAGGGTGAAAAGGAAAAAA-------A-GTTCGGTGG----GGTCATATTA-GTT-TGTGCATTTGGGAAC-AAAGTTTTTATGGGATAACCTATTTTTGTG--T-CCCGCACCCGCCTTCTC----ATTTCTTGATCAT-AAATT----TCAACATCGGATT-ACAA-ATATATGACTT-TTG--TATTA--AAA-----TGGTATTC-TT-TCCTGGTGAAT---TTCTAA-TTATTTCAGGCAA-ATTTTATGG-TATTTATTT-TAATCATATAACTACTTACAT--GTTC-TCT-TAAAAAGG--------AT-AAATAATTGTG--TA--AACAATACTCAATTCA-ATGATATAAATTC--ATT--TATC--ACTTTCGA--GAA-TAC-ATGTTG--AAACTAAAA--TGCCACTTAAAGTTTTAA
gi|1 : CCAAATTTTTGTAT--GA-TAGA-----ATATCAAA-CGGTA-TTATTTAGAG----TTGCGCTTTATTA-GACACC-AATTTTTAAACTCAG-T------CAAACC-TTCCAT-GC-ACCACCTTAGAGTGAAGAGATGTGATACTTTC--CT------GGT-ATGATTAGATTTCCG-GT-AAT-GAT-G-C-ACCGGGGATGA---AT-C-CGGGTAATGTTA--TTATCATAACAATTCCCGTTCGTG--GTTGA-CAAA-ATTGG-ATGAT-GTTCT-ACAA----AAAGCAG--ACCGGATAAA-GACA--CAAATTATGTCGA-TCTGGTA-GCGTCAAAAGAAATATA------AAAATCAACAAAATGAATCT-TTTTTGTTTTTTTAGACACGA-CACCGCGCCA---------TATTTTCTTTCT-------------AAAGAATGCCGATACAT---------TAAACTATT------------TTAGCCTTCTG-GA----TT-CGTTTTTGCT--ATGAA---CTCCATAATGGCAATTATT-TA--CGTTGGT--GATTTTTTTA----AAAA-CTCTGATTACTAGTT--ATTAC-----CCTT---TTGTATTCAAAAA--TGTTATGA-TTAAGA-A----AT-AA-TGC-ACATTGGACATTCAGGGACT--ATAGAA-TCTA---ATTACCG------GGTCTTCGCTGCGC----GGCTAC---A--GGAT-CAGA--T-----TG------GGTAT----C-GCATAT-TT-AGTTTTG--TAGT-TTAGATTTTTTAAAAA--TAAAAC-TAC-TT---AATAGA--CAACT---------ACAATATTCA-----C-AGA-ACTTAT-TATCAACA-GCCTT---G-TTCAGACACTATGcttattgtccaactcttccatgccactgtgacattgacctttgatcttttactgatctctcaaaaatatcacaacaagcgatgttcccttctttagtgtcaatatcccttatgtccaaatttttgtatgatagaatatcaaacggtattatttagagttgcgctttattagacaccaatttttaaactcagtcaaaccttccatgcaccaccttagagtgaagagatgtgatactttcctggtatgattagatttccggtaatgatgcaccggggatgaatccgggtaatgttattatcataacaattcccgttcgtggttgacaaaattggatgatgttctacaaaaagcagaccggataaagacacaaattatgtcgatctggtagcgtcaaaagaaatataaaaatcaacaaaatgaatcttttttgtttttttagacacgacaccgcgccatattttctttctaaagaatgccgatacattaaactattttagccttctggattcgtttttgctatgaactccataatggcaattatttacgttggtgatttttttaaaaactctgattactagttattacccttttgtattcaaaaatgttatgattaagaaataatgcacattggacattcagggactatagaatctaattaccgggtcttcgctgcgcggctacaggatcagattgggtatcgcatatttagttttgtagtttagattttttaaaaataaaactacttaatagacaactacaatattcacagaacttattatcaacagccttgttcagacactatg
gi|10 : ttaaggtgtttctgttggtgagattggacctcctctctttcattggaatttaaaactttttttttaaacataacccattcttgaactcatttcatcttgaccaaagaaaggttaattccaaaacaactgaaaggaaaaaggggtatgttgtgacaggactttaaagagttacagcccatcaagtttgatatcccttttgctctgaaagttaaaactttttttgtcgtttgaaagggatcaccattttccaccaagtaaacacaatagaaattaaaacaaatattcattgacagccttttagagaattaaatctcattatcttttatttcaatgaaaaattaattcgattaatttataattttttataacttttacataatttttttttcaaatttatttctagaaatagaataacgagattatctcagcatatattaggagcttggacgaaaaaaatgaccaaatttttatgtcaaatttttgatcaagaaaattcaatattattaggcggaagagtccttgaattaaaacttggtttcgtggaaatgccaatggcagattcgaaacaacttaggttactactttgtggctcatttttgatttagagggtgaaaaggaaaaaaagttcggtggggtcatattagtttgtgcatttgggaacaaagtttttatgggataacctatttttgtgtcccgcacccgccttctcatttcttgatcataaatttcaacatcggattacaaatatatgacttttgtattaaaatggtattctttcctggtgaatttctaattatttcaggcaaattttatggtatttattttaatcatataactacttacatgttctcttaaaaaggataaataattgtgtaaacaatactcaattcaatgatataaattcatttatcactttcgagaatacatgttgaaactaaaatgccacttaaagttttaacttattgtccaactcttccatgccactgtgacattgacctttgatcttttactgatctctcaaaaatatcacaacaagcgatgttcccttctttagtgtcaatatcccttatgtCTCATTTT---------TAATGA-----AAAAAA-------ATGTC-AG-GG----G-------TA-G-T--GTGCG-TTGG-AAC-AAAGTTT---TG----AACC-A-TTTTGAG--TGCC--CATCC-CCTTTTC----ATTT-T-G-TCAT-AAATT----TCAAC-TC-AATA-ACAATAT-T-CAA--T-TTGT-TAT----AAAA----T-GCATAT-TC-TTC-----AAT---TCATAT-TTA-------CAA-ATCATAT-G-TATTTA-TT-CCATCGTATAA
gi|11 : tcTTAAGGATGTT-CT-CTGGT-G-GTAT--TAT-TTT-----TTT-AAAGT-AAT--A--AAAAAT--AAT------A-AT-AACCCAT-TTT----AACTTATT-CAT-CT-TGATCA--GAAAGAC-AATTTAAAC-A-CAC-------GA-A---TA---AG-------------TAT--AT-CAGTG-T-GGT-ACATGTAGTCAAA-GTGTT-ACAGCTCCT-GAAAG-TTA----GCCCTTTGCT--GAA-AG-TTA---TATATATTTT---C-TTTgac
gi|12 : gTTTTAA-C--AG-C------CAA--C-TTTCAT-GC-GACCATAATGA----AGATATATC-CACTT-C--CT------GGT-AT-AT---ATT--CT-GT-TAT-GAT-GAC-ACT----ATGACTCAT-CGC-----ATT--T--TT--TGT--------CTGT----G--ATT-A-CAAA-TT-AA-ATG-T-AG-GT-ACAAAACGA--GCAG--AAACG
gi|13 : agTTAAGGATGTT-CT-CTGCT-T-TTAT--GAAGTTT-----TTT-CA--A-AATAAT--AAACTT--TTT-----AA-AT-AACCCAT---T--ATAACTCATT-CAT-CT-TCACCA--GGAAGGC-AATTTAAAC-A-CAA-------GAGA---AG---GG-------------TGC--AT-TGGTG-T-CG--AC-T----TC-CA-GAGTT-ACAGGCCCT-ggaaacag
gi|14 : TTGAAA---ATCA-CCAT--T-TTCCAC-AAGAAA--CACAATG-----T-AAACCAAATA-------ATC---------------------------TCCA-TTATCTTTTCGTC----CA-TGAA-AA-TCAGT-CA--T-AA--TTTATAA-TT------TT-G--AT--AACA--TTTACCCAA-AAA--------TGTTCAAC---AATT-CTTT-AA-------T--AATA
gi|15 : c---AATT-CTAG-AAATACACGT--AATAAC--TGATT-ATCT-AG-CAT-TATT--GG---------AGAA--AAC--TG--GCACAAA-TGTTAAGT---C----ATATTTT--GTC---------A-AAAT-TTCA---AT-CTA----GC---t
gi|16 : tttgtcAAGGATGTT-CT-CTGGT-GAG-AT--GAC-TTT-----TTT-CATTC-GAT--T--AAACTT--TTTAAA--AA-AT-AACCCAT-CTTA-A-AACTCATT-CAT-CT-TGACCA--G--AGGC-AATTCAAA
gi|17 : ta-CACGACCGCCGCGCCA---------TAT-TTCT--CT-------------AA-------------AT---------T-------TGATAGATCTATTTTA--CCCCGG-GA----TT-CGTTTT-GATGACTAAA---TTC----------ATTGTT-TA--CGTTGGT--GATTTTTT-
gi|18 : AT-CT-TGATCA--GAAAGACAA-TTTAAAC-A-CAA-------GT-A---AA---GGATACATGTATATATATAAGT-AAGTG-T-GG--AC-T----TTAAAAGAGTT-ACCGCCCCT-CAAAG-
gi|2 : TTAAGGATGTT-CT-CTGGTTGAG-AT--GAAATTT-----TTT-CAT-G-AAT--TTTAAACTT--TTTT----AA-AT-AACCCAT-CTT--A-A-CTCATT-CAT-CTATGACCA--GAAAGGCCAATTCAAAC-A-CAA-------GA-A---AAA--GG-------------TAT--GT-TAGTG-C-GG--AC-T----TTAAA-GAGTT-ACAGCCCCT-CAAAG-TTA-----CCCTTTGCT--GAA-AG--TA---C---TTTTTT---CTTTTTAAAA---ATCA-CCATC-T-TTCCAC-AAG--AA-CACAATA-----T-AAAACAAATA-------TTCAT-GACAGA---------A----AAT-CTCA-TTATC--TTA-TT----CA-TGAA-AA-TTAAT-CA--TGAA--TTTATAATTT------TT-T--ATTAAACT--TTTAC---ATTAA------TTTTTTCAAA---AATT-CTAA-AA-------T--AATAAC--AGATT-ATCT-AG-CAT-TATTG-GG---------GGAACGAAAA-CGACACACAAA-TT---ACT---CGCTAAAATTTT--GTCCACGCAAAAA-AAAA-ATAAAACAT-ATA----GC---AGAGTTCCTTGAATT-AAAC-T---TTTTTTG--ATCGAACACTTTGCCAAAGCC-ACAG-ATTACCATCATAAA-A-CA--------TATCTT--CTT---GCTCATTTT---------GAATGA-----AAAAAAAAAACACA-GTT-GA-GGCCAAG-------CAGG-TATGTGCA-TT-GGAAC-AAAGATT---TG----AA-CCA--TTTGTGA-T-CC--CACCC-CCCTCTCTCCAATCT-TTG-TCATAAAATTTATATCAACATC-AATTAACAATAA-TATGA--TGCTGTCCATACTAAAA-----TGATATTTCTCACTC-----AATCA-TCATATAATA-------CAA-ATTTAA----TATTTA-TTATAATCATATAACC------AT--ACTGATC----AAAAGG--TAAAAAAT-AAA-AATATTGAATACTTACAA-A--CAA---ATA----ATAA-TTCAAATTAATATC--ACT---GAAGGAA-TACAATAGTGG-AAAC--AAATTTG-CAC-AAAC---TTAA
gi|2 : CCAAATTTTTGTTTCCGAATAGATAACAA----AAA-AAGTACCT---T-GAG-----TGTCCTT----C-GAACAC-AATCCTTTAAC--AG-TAATAACCAA--CATTCCATCGCAAAACAC--GGA----AGAGA-----TACTT-CAACTGACCAAGGT-A--AT--GATTTCAC-GGAAAT-GATCGGCAACCA---ATGA---AT-C-C-----ATG--ATCTT--TATAACCATTCCTGT----GCCGTT-A-CAAACAT-GGAATG-TGAT-CCAACAA----G--ACAGAAAACCGATAAGAGA-AACCAAATTAT--TGA-TCTAGTAGGCGC--AAAGAAATATACATGTTAAAATCAACGAAATGA-TCTGTTGTCATTT-----G-CACGAACGCC-CACCGCCCAACCAATATATTCT--CTAAACCTGACGACCAA------------TATCAAACTCTAT-------T------------TTA--CCTCGGCGAAACCTTACG-TTT-GATGAATAAAACTTTC----------ATGATTATACCCGCTTGTAGGAACTTTT-ATACCAAAACCTCTGAT-ATTA---GAATTACACATACCATATATTG-ATTCAAAAACCTG--ATGA-TTACAA-ATACCATAAA-TGCAA--TTGAACAT-CAAGGACTCAATAGAA-AACA---TCAACTA---CCGGGCTTCC-TG-CGCTCAGG----C---AATGGATACAGAATCC---TTGAGAAGAGGTATCAGAC-A-ATAT-TTCAGTTT-G--TAGA-------TCTTTAGAAATCTAAAACTTACGTTCCAAAT-AGAAC-ACCAATCCTACAACAA-ATTCACAAT-CAAGA-AC-TACCCATCAACA-G-CTT-GGGTTTCAGCCcattgtcccaatttcatgcccctgtgacattgacctttgaactttctgacatcccataaatattaacaagtgacaatgtcccttctctagtgcgtatcgatatgtctccaaatttttgtttccgaatagataacaaaaaaagtaccttgagtgtccttcgaacacaatcctttaacagtaataaccaacattccatcgcaaaacacggaagagatacttcaactgaccaaggtaatgatttcacggaaatgatcggcaaccaatgaatccatgatctttataaccattcctgtgccgttacaaacatggaatgtgatccaacaagacagaaaaccgataagagaaaccaaattattgatctagtaggcgcaaagaaatatacatgttaaaatcaacgaaatgatctgttgtcatttgcacgaacgcccaccgcccaaccaatatattctctaaacctgacgaccaatatcaaactctattttacctcggcgaaaccttacgtttgatgaataaaactttcatgattatacccgcttgtaggaacttttataccaaaacctctgatattagaattacacataccatatattgattcaaaaacctgatgattacaaataccataaatgcaattgaacatcaaggactcaatagaaaacatcaactaccgggcttcctgcgctcaggcaatggatacagaatccttgagaagaggtatcagacaatatttcagtttgtagatctttagaaatctaaaacttacgttccaaatagaacaccaatcctacaacaaattcacaatcaagaactacccatcaacagcttgggtttcagcctaaccggccataa
gi|20 : ttaaggatgttctctggttgagatgaaattttttcatgaattttaaacttttttaaataacccatcttaactcattcatctatgaccagaaaggccaattcaaacacaagaaaaaggtatgttagtgcggactttaaagagttacagcccctcaaagttaccctttgctgaaagtacttttttctttttaaaaatcaccatctttccacaagaacacaatataaaacaaatattcatgacagaaaatctcattatcttattcatgaaaattaatcatgaatttataattttttattaaacttttacattaattttttcaaaaattctaaaataataacagattatctagcattattgggggaacgaaaacgacacacaaattactcgctaaaattttgtccacgcaaaaaaaaaataaaacatatagcagagttccttgaattaaactttttttgatcgaacactttgccaaagccacagattaccatcataaaacatatcttcttgctcattttgaatgaaaaaaaaaaacacagttgaggccaagcaggtatgtgcattggaacaaagatttgaaccatttgtgatcccacccccctctctccaatctttgtcataaaatttatatcaacatcaattaacaataatatgatgctgtccatactaaaatgatatttctcactcaatcatcatataatacaaatttaatatttattataatcatataaccatactgatcaaaaggtaaaaaataaaaatattgaatacttacaaacaaataataattcaaattaatatcactgaaggaatacaatagtggaaacaaatttgcacaaacttaacattgtcccaatttcatgcccctgtgacattgacctttgaactttctgacatcccataaatattaacaagtgacaatgtcccttctctagtgcgtatcgatatgtctTTCAC--T-C-AGA-AC-TA--TATCAACA-GCCTTGGGG-TTCAGCCATTA-GTATGCtaaccggccataa
gi|3 : TTAAGGATGTT-CT-CTGGT-----------T-TTT-----TTT-C-TTG-AAT--T--AAACTT--TTT-----GA-AT-AACCCAT-TTT--A-AACTCATT-CAT-CT-TGACCA--GAACGGCAAATTCAAAC-A-CAA-------GA-A---AA---AG-------------TAT--GT-TAGTG-C-GG--AC-C----TTAAA-GAGTT-ACAGCCCCT-GAAAG-TTA----CCCCTTTGCT--GAA-AG-TTA---C---TTTTTT---C-TTTTAAAA---CTTA-CCAT--T-TTCCAC-AAGAAAA-CACAATA-----T-AAAACAAATA-------TTCAT-GACA-T---------AAT--AAT-TTCA-TTATCTTTTATTT----CA-TGAA-AA-TTAAT-CA--T-AA--TTTATAA--T------TT-T--AT--AACT--TTT-C---A-TAA-TT---TTTTTTCAAA---AATT-CTAG--A-------T--AATAAC--AGATT-ATAT-AG-CAT-TAT---GG---------GGAA--AATA-TG--ACCCAAA-TTTTAAGT---C----AAA-TTT--GTC--------AA-AAAA-TCCA---AT-CTA----GCA--AGAGTTTC-TGAATT-AAAC-----TTTTGTG--A---AA----TTGCTAC---T-GTAG-ATT-------TGAA-ATCA--------TA--TT--TTT---GCTCA-TTT---------GAATG------AAAAAA-------A-GTT-GG-GG----G-------TA-G---TGTGCA-TTGGGAAC-AAAGTTT---TG----AACCCA-TTTT-TG--T-CC--CACCC-CCTTC-C----ATCT-TTG-TCAT-AAATT----TC-ACATC-AATT-ACAATAT-GATGA--T-TTGT-TAT----AAA-----T--TATTT-CC-TTC-----AAT---TCATAT-TTA-------CAA-ATTTTAT-G-TATTTA-TC-TAATTATATAACCA-----ATCAACTG-TC--TAAAAAGG--T-----AT-AAATAAT-TTG--TA--TATGA-A--CAA---A-A----TTAATTCC--ATT--TATC--ACT---GAA--AATTAC-GTGGTGGAAAAC--AAG--TG--AC-TAAA---TTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAATTTTGTTTT--GAATAGA-----A----AAACAAGTA-CT---T-GAG----TTATCCTT----A-AAAACC-AATTTTT-AAC--AGTT------CAA--C-TTCCAT-GC-ACCCA-TTGGA----AGAG-TGTG-TACTT-C--CT------GGT----AT--GGTTT-TC-G--AAA-GAT--GC-ACC----ATG----AT-C-C-----ATG--A--TT--AAT-AC-ATTCCC-T----G--GTT-A-CAAA-AT-GG-ATG-T-AT-CT-ACAA----A--GCAC--AACCGATAAG-GA-A--CAAATT-T--TGA-TCTAGTA-GCGC--AAAGAAATATA------AAAATCAACAAAGTGA-TCC-TTATCG---TTTTAG-CATGAACGCCGCGCCG---------CATATTCT--CT-------------AA------------CAT---------T-------T------------TTA--CCTCGG-GA----TT-CATTTT-GATGAATAAA---TTC----------ATTGTT-TA--CATTGGT--GATTTTTT-A----AAAA-CTCTGAT-AC---TTGA--------TACCCT---TTTTATTC-AAAA--TG--ATGAGTTAAAA-A----AT-AATTGC-A--CTGGACAT-CAGGGACT------AA-T-TA---TT--CCG---AAAGGCTTTC-CT-CGC----G----C---A--GGAT-CAGA--TCAATTTG------GGGAT----C-G-ATAT-TT-AGTTT-G--TAGATTT----TTTTTAAATA--TAAAA--TACTTT---AAT-GG--C-ACCTT-------ACAA-ATTCAC--T-C-AGT-AC-TA--TATCAACAGGCCTT-GGG-TTCAGCCACTACGTTTGC
gi|4 : TTAAGGATGTT-CT-TTGGT-GAG-AT--GAAATTT-----TTT-CATTG-AAT--T--AAACTTCCTTT-----GA-ATTAACCCAT-CTCTGG-AACTCATT-CATTCT-TGACCA--GAAAGGCAATTCCAAACCATCAA-------GA-ATAAGA---GG-------------TAT--GTGTAGTG-C-GGGGAC-TG---TTAAAAGAGTTGACAGTCCCTTCAAGGGTTA----CCC-TTTGCCTGGAATAGCTTA---C---TTTTT----C-TTTGGATAT--ATCAGCCATATTATTCCAC-AAGAAAATCA-AATA-----TCAAAACAAATACCACCCATTCAT-GACAGT---------AAT--AATCTTCAATTATCTAGTATCTTCCTCACTGAATAA-TTAAT-C---T-AACTTTTATAA-TTATGATATT-T--AT--AGCTGCTTTAC---A-TTA-TTGACTTTTTCCAAA---AAATACGAC-AA-------T--AATAACTCAGATTTATCT-AGGCAT-TATTGTGG---------GGAA--AACAATG--ACACAAA-TTTTAAGTTGTC----AAATTTT--GGC--------AA-AAAAGTTCA---AT-CTA----GC---AGAGTTCCGTG-ATT-AAACTT---TTTTGTGGAA---AA----TTGATAAT--C-GCAGAATT-------TGAATG-AA--------T---TT--TTT---GCTCA--TT---------GAATG-------AAAAA-------A-GTT-AG-GG----A-------TA-G---CGTGCA-TT-GGAACAAAAGGTT---TG----AACCAT-TTTTGTGTCT-CC--CACCC-CTTTCTC----ATTT-TT--TCAT-AAATT----TCAAC-TC-AAAT-ACAATA--TATGA--T-TTGTATAT----AAA-----T-ATATTT-TC-TTC-----AATTTATCATAT-TTA-------CAATTTTTTAT-GATATTTA-TT-TAATCATATA---A-----AT--ACTG-TCT-TAAAAAGGTCT-----ATCAAAT-AT-TTGTATA--TACAA-A--CAA---T-A----ATAA-TTA--ATT--TATTAAACT---GAAGAAA-TAC-A--GTGAAA
gi|5 : AAGGATGTT-CT-CTGGT-G-GTGT--GAA-TTT-----TTTTCAAAG-AAA--T--AAACTC--TTT-----GA-AT-AACGCAT-TTT--A-A-CTCATT-CAT-CT-TGACCA--GAAAGGCAA-TTTAAAA-A-CAA--------A-A---AA---GG-------------TAT--GT-CAGTA-T-GA--AC-T----TTAAA-GAGAT-ACAGCTCCT-CAAAG-TTT----CCCCTTTGCT--GAA-AG-TTA---C---TTTTTT---T-TTTCGAAA---ATCA-CCAT--T-TTCTAC-AA-AAAA-CACAATA-----T-AAAACAAATA-------TT-AT-GACA-A---------AAT--AATATTCA-TTATCATCTATTT----CA-TGAA-AA-TTAAT-CA--T-AA--CGTATAA-TT------TT-TACAT--AAAT--TTT
gi|6 : cCCAA--TTTTGTTT--GAATAGA-----A----TAA-AAGTA--T---T-GAGGGGGCTGTCCTT----AAGAAACCCAATTTTGAAAC--AG-T------CAA--C-TTCTAT-GC-ACCCACTTGGA----AGAGATGTG-CACTT-C--CT------GGTAA--AT--GATTTTCCGG--AATGGAT-GGC-ACC----ATGA---ATCC-C-----ATG--C--TT--CTTAGAATTTTCTGT----G--GTT-ACCAAA-AT-GG-ATG-T-AT-CT-ACAAC---A--GC-G--AACCGATAAC-AA-A---AAATTAA--TGAGTCTAGTA-GCGC--AAAGAAgtcaaga
gi|7 : tattctattttaatctTC-AATT-ACAATAT----GA--T-TTGT-TAT----AAAATGCAT-ATATAT-TC-TTC-----AAT---TCATAT-TTA-------AAA-ATTTTAT-G-TATTTA-TT-TTATCACA-AA--A-----AT--ACTG-TCTAAAAAAAAG--T-----AT-AA--AATATTG--TA--CACAA-A--C-------A----AT-ATTTC--ATT--TATC--ACT---GAA-GAA-TAC-AT-GTGG-AAAC--ATA--TGCCAC-TAAA---TTAA
gi|8 : GTA-CT---T-GAG----TTATCATT----A-GAAACC-AATTTT--AAC--AG-T------CAA--C-TTCCAT-GC-ACCCACTTGGA----AGATATGTG-TACTT-C--CT------GGT-A---T--GATTTCCC-G--AAT-GAT-GAC-ACC----ATGA---AT-C-C-----ATA--A--TT--TATAACATTCCCTGT----G--GTT-A-CAAA-AT-GG-ATG-T-AT-CT-ACAA----A--GCAG--AACCGATAAG-AA-A--CAAATCAT--TGA-TCTAGTA-GCGC--AAAGAAACAT-------AAAATCAACcattgtccaattccatgcactgtgacattgacctttgaccttctgactccaaaattcactggtattaagccaatgcc
gi|9 : tcttatgtccaaatttggtttAAA--TG--ATGA-TTAAAAAA----AT-AA-TGC-A--TTGGACAT-CAGGGACT--ATAGAATTCTAAATTTAGCCGAGAAGAAGCTTTC-CT--GC----G----CTGGA--TGAT-CAGA--T----TGG------GGTAT----CAG-ATATGTT-AGTTT-GGTTAGA--T----TTTTTAAAAA--TAAAA--TAC-TT---AA--------A-----------ACAA-AATCAC--TCC-AGACAC-TA--TATCAACA-TCTTT-GGG-TTCAGC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TAATGACCTTTTAAACCTAGGAATGACATTTACAGTGCTTATATACACAGGCACTTGACGTTTTAAATATATTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333333333 11111 1111 11111 333333 1111 1 1111111 111 2222222222222 11 1111 1 11111 11 1111111 111 111 11 11111 2222222 4444444444444444 1 1111 1 111 111111 1111 111 333333 111 2222222222 11 111 333333333 11 11 22222222 11 222222222 111 1111 222 2 1 33333 222222222222 33333 1 4444444444444444444444444444 11 111 1 333333333 333333 2222222 44444444444444444444 1 111 1111 1111 11 11 1111 1111 1 1111 1 2222 33333333 11111 222 2222222 22222222 11 111 33333333 1 33 11 11 3333333333 1 11 11 11 111 11 1111 11 11 11 1 1 111 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 3333333333 1 111111 22222 222222 11 11111111 1111 111111 2222 22 2222 111 11111 11111 11111 1111 2222222 11 11 11 3333333 1 1 1111 1 444444444 11 888888888888888888888888888888888888888888888888888888888888 11 1 2222 1 1 111 4444444444 1 11 11 222222 1 1 6666666666666666 222 11 11 1 222222 1 1 1111 1 111 333333333333333333333 11111 4444444444444444 1 5555555555555555 22222222 1 1 1 11 4444444 11 22 8888888888888888888888888888 1 1111 11 1
lowQualScore : 5 5 4444444444444 22222 5 3333 44444 66 000000 5 5 77 7777 3 5 4 4 66 2 4 5 5 6666666 5 888 333 7777777777777 66 5 888 11 5 5555 0 5 5 5 66666 1 88 6 6 6666666 111 6 888 6 55 6 6 3 6 66666 6 1111111 6 7777777777777777 3 6 3 3 4444 3 6 6 6 000 6 99 6 999999 0000 99 99 0 444 8 333333 111 6 77 1111111111 99 8 8 8 8 777 222222222 11 999 11 5 8 0 11111111 0 11 999999999 8 8 444 8 7777 222 0 3 0 00000 999999999999 55555 0 9999999999999999999999999999 33 777 0 222222222 000000 6666666 8 8 8 99999999999999999999 8 0 8 1 444 7777 3333 99 8 11 8 0 7777 8 888 8 7777 0 0 6 6 6666 99 6 3 3333 11111111 6 6 66666 000 6 1111111 6 777 6 6 99999999 11 8 999 11111111 8 777 5 66 11 8 11 0 1111111111 0 5 11 11 11 444 55 8 1111 88 33 33 5 0 777 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3 33 3 7777777777 0 666666 8 00000 000000 8 00 99 99999999 99 6 6 6 44 4444 6 6 99 999999 1111 99 5 6 22 6 888 6 0000 111 6 6 66666 77777 999 44444 0 4444 99 6 6 6 6 6 6 6 6 6 3333333 99 8 8 11 0 11 8 8 11 2222222 0 3 3 1 2222 0 9 2 000000000 9 33 222222222222222222222222222222222222222222222222222222222222 33 0 1111 0 3 0 2 777 3333333333 0 33 33 999999 3 3 5555555555555555 1 333 7 7 33 33 0 222222 0 0 4444 0 777 222222222222222222222 33333 4444444444444444 0 3333333333333333 55555555 0 0 0 33 3333333 33 55 2222222222222222222222222222 0 4444 8 8 8 99 8 8 8 2 1
lowQualScore : . . ............. ..... . .... ..... .. ...... . . .. .... . . . . .. . . . . ....... . ... ... ............. .. . ... .. . .... . . . . ..... . .. . . ....... ... . ... . .. . . . . ..... . ....... . ................ . . . . .... . . . . ... . .. . ...... .... .. .. . ... . ...... ... . .. .......... .. . . . . ... ......... .. ... .. . . . ........ . .. ......... . . ... . .... ... . . . ..... ............ ..... . ............................ .. ... . ......... ...... ....... . . . .................... . . . . ... .... .... .. . .. . . .... . ... . .... . . . . .... .. . . .... ........ . . ..... ... . ....... . ... . . ........ .. . ... ........ . ... . .. .. . .. . .......... . . .. .. .. ... .. . .... .. .. .. . . ... ........................................................................................... . .. . .......... . ...... . ..... ...... . .. .. ........ .. . . . .. .... . . .. ...... .... .. . . .. . ... . .... ... . . ..... ..... ... ..... . .... .. . . . . . . . . . ....... .. . . .. . .. . . .. ....... . . . . .... . . . ......... . .. ............................................................ .. . .... . . . . ... .......... . .. .. ...... . . ................ . ... . . .. .. . ...... . . .... . ... ..................... ..... ................ . ................ ........ . . . .. ....... .. .. ............................ . .... . . . .. . . . . .
lowQualScore : 0 0 5555555555555 55555 0 2222 99999 99 555555 0 0 22 8888 2 0 4 4 11 9 8 0 0 2222222 0 888 888 5555555555555 99 0 000 99 0 6666 0 0 0 7 77777 0 33 7 7 0000000 777 7 333 7 88 7 7 5 7 77777 7 7777777 7 2222222222222222 3 7 5 2 2222 3 7 7 7 888 7 22 7 222222 8888 22 22 8 000 0 222222 777 7 77 8888888888 00 0 0 0 0 000 000000000 00 888 00 6 0 8 00000000 8 00 888888888 0 0 000 0 0000 000 0 2 0 88888 222222222222 55555 0 5555555555555555555555555555 88 555 6 000000000 666666 0000000 0 0 0 66666666666666666666 0 0 0 0 000 0000 2222 00 0 00 0 8 0000 0 888 0 0000 8 6 7 7 5555 22 7 3 3333 88888888 7 7 77777 888 7 7777777 7 555 7 7 00000000 00 0 666 88888888 0 222 8 44 00 0 00 8 0000000000 8 8 00 00 00 000 88 0 0000 66 88 88 0 0 555 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2 88 2 2222222222 0 222222 0 88888 888888 0 77 22 33333333 22 7 7 7 55 2222 7 7 22 222222 7777 22 2 7 55 7 777 7 8888 777 7 7 77777 77777 555 00000 7 2222 22 7 7 7 7 7 7 7 7 7 5555555 22 0 0 00 8 00 0 0 00 0000000 7 3 3 0 7777 0 2 5 000000000 8 88 555555555555555555555555555555555555555555555555555555555555 88 0 2222 0 2 0 5 555 8888888888 0 88 88 333333 3 3 0000000000000000 0 333 3 3 88 88 0 222222 0 0 8888 0 000 222222222222222222222 55555 8888888888888888 0 8888888888888888 22222222 0 0 0 88 8888888 88 00 8888888888888888888888888888 0 8888 0 0 0 00 0 0 0 0 0
consensus : TTAAGGATGTT-CT-CTGGT-GAGTAT--GAN-TTT-----TTT-CATTG-AAT--T--AAACTT--TTT-----GA-AT-AACCCAT-CTT--A-AACTCATT-CAT-CT-TGACCA--GAAAGGCAAATTCAAAC-A-CAA-------GA-A---AA---GG-------------TAT--GT-TAGTG-C-GG--AC-T----TTAAA-GAGTT-ACAGCCCCT-CAAAG-TTA----CCCCTTTGCT--GAA-AG-TTA---C---TTTTTT---C-TTTTGAAA---ATCA-CCAT--T-TTCCAC-AAGAAAA-CACAATA-----T-AAAACAAATA-------TTCAT-GACAGN---------AAT--AAT-TTCA-TTATCTTTTATTT----CA-TGAA-AA-TTAAT-CA--T-AA--TTTATAA-TT------TT-T--AT--AACT--TTTAC---A-TAA-TT---TTTTTTCAAA---AATT-CTAG-AA-------T--AATAAC--AGATT-ATCT-AG-CAT-TATTG-GG---------GGAA--AANA-TG--ACACAAA-TTTTAAGT---C----AAATTTT--GTC--------AA-AAAA-TTCA---AT-CTA----GC---AGAGTTCC-TGAATT-AAAC-T---TTTTGTG--A---AA----TTGCCAA---C-GCAG-ATT-------TGAA-A-CA--------TA--TT--TTT---GCTCATTTT---------GAATGA-----AAAAAA-------A-GTT-GG-GG----G-------TA-G-T-TGTGCA-TTGGGAAC-AAAGTTT---TG----AACCCA-TTTTGTG--T-CC--CACCC-CCTTCTC----ATTT-TTG-TCAT-AAATT----TCAACATC-AATT-ACAATAT-TATGA--T-TTGT-TAT----AAA-----T-ATATTT-TC-TTC-----AAT---TCATAT-TTA-------CAA-ATTTTAT-G-TATTTA-TT-TAATCATATAACCA-----AT--ACTG-TCT-TAAAAAGG--T-----AT-AAATAATATTG-ATA--TACAA-A--CAA---A-A----ATAATTTC--ATT--TATC--ACT---GAAGGAA-TAC-ATGGTGGAAAAC--AAA--TGCCAC-TAAA---TTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAATTTTTGTTT--GAATAGA-----A----AAA-AAGTA-CT---T-GAG----TTGTCCTT----A-GAAACC-AATTTTTAAAC--AG-T------CAA--C-TTCCAT-GC-ACCCACTTGGA----AGAGATGTG-TACTT-C--CT------GGT-A--AT--GATTTCCC-G--AAT-GAT-GGC-ACC----ATGA---AT-C-C-----ATG--A--TT--TATAACAATTCCCGT----G--GTT-A-CAAA-AT-GG-ATG-T-AT-CT-ACAA----A--GCAG--AACCGATAAG-GA-A--CAAATTAT--TGA-TCTAGTA-GCGC--AAAGAAATATA------AAAATCAACGAAATGA-TCT-TTNTCGTTTTTTTAG-CACGAACGCCGCGCCG---------TATATTCT--CT-------------AA------------CAT---------T-------T------------TTA--CCTCGG-GA----TT-CGTTTT-GATGAATAAA---TTC----------ATTGTT-TA--CGTTGGT--GATTTTTT-A----AAAA-CTCTGAT-ACTA-TTGAATTAC---TACCNT---TTGTATTCAAAAA--TG--ATGA-TTAAAA-A----AT-AA-TGC-A--TTGGACAT-CAGGGACT--ATAGAA-TCTA---TTAACCG---ANAGGCTTTC-CT-CGC----G----C---A--GGAT-CAGA--TC---TTG------GGTAT----C-G-ATAT-TT-AGTTT-G--TAGA-TT----TTTTTAAAAA--TAAAAC-TAC-TT---AAT-GG--C-ACC---------ACAA-ATTCAC--T-C-AGA-AC-TA--TATCAACA-GCCTT-GGG-TTCAGCCACTACGTNTGC
Reference ( family-2905 ) : TTAAGGATGTT-CT-CTGGT-GAGTAT--GAN-TTT-----TTT-CATTG-AAT--T--AAACTT--TTT-----GA-AT-AACCCAT-CTT--A-AACTCATT-CAT-CT-TGACCA--GAAAGGCAAATTCAAAC-A-CAA-------GA-A---AA---GG-------------TAT--GT-TAGTG-C-GG--AC-T----TTAAA-GAGTT-ACAGCCCCT-CAAAG-TTA----CCCCTTTGCT--GAA-AG-TTA---C---TTTTTT---C-TTTTGAAA---ATCA-CCAT--T-TTCCAC-AAGAAAA-CACAATA-----T-AAAACAAATA-------TTCAT-GACAGN---------AAT--AAT-TTCA-TTATCTTTTATTT----CA-TGAA-AA-TTAAT-CA--T-AA--TTTATAA-TT------TT-T--AT--AACT--TTTAC---A-TAA-TT---TTTTTTCAAA---AATT-CTAG-AA-------T--AATAAC--AGATT-ATCT-AG-CAT-TATTG-GG---------GGAA--AANA-TG--ACACAAA-TTTTAAGT---C----AAATTTT--GTC--------AA-AAAA-TTCA---AT-CTA----GC---AGAGTTCC-TGAATT-AAAC-T---TTTTGTG--A---AA----TTGCCAA---C-GCAG-ATT-------TGAA-A-CA--------TA--TT--TTT---GCTCATTTT---------GAATGA-----AAAAAA-------A-GTT-GG-GG----G-------TA-G-T-TGTGCA-TTGGGAAC-AAAGTTT---TG----AACCCA-TTTTGTG--T-CC--CACCC-CCTTCTC----ATTT-TTG-TCAT-AAATT----TCAACATC-AATT-ACAATAT-TATGA--T-TTGT-TAT----AAA-----T-ATATTT-TC-TTC-----AAT---TCATAT-TTA-------CAA-ATTTTAT-G-TATTTA-TT-TAATCATATAACCA-----AT--ACTG-TCT-TAAAAAGG--T-----AT-AAATAATATTG-ATA--TACAA-A--CAA---A-A----ATAATTTC--ATT--TATC--ACT---GAAGGAA-TAC-ATGGTGGAAAAC--AAA--TGCCAC-TAAA---TTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAATTTTTGTTT--GAATAGA-----A----AAA-AAGTA-CT---T-GAG----TTGTCCTT----A-GAAACC-AATTTTTAAAC--AG-T------CAA--C-TTCCAT-GC-ACCCACTTGGA----AGAGATGTG-TACTT-C--CT------GGT-A--AT--GATTTCCC-G--AAT-GAT-GGC-ACC----ATGA---AT-C-C-----ATG--A--TT--TATAACAATTCCCGT----G--GTT-A-CAAA-AT-GG-ATG-T-AT-CT-ACAA----A--GCAG--AACCGATAAG-GA-A--CAAATTAT--TGA-TCTAGTA-GCGC--AAAGAAATATA------AAAATCAACGAAATGA-TCT-TTNTCGTTTTTTTAG-CACGAACGCCGCGCCG---------TATATTCT--CT-------------AA------------CAT---------T-------T------------TTA--CCTCGG-GA----TT-CGTTTT-GATGAATAAA---TTC----------ATTGTT-TA--CGTTGGT--GATTTTTT-A----AAAA-CTCTGAT-ACTA-TTGAATTAC---TACCNT---TTGTATTCAAAAA--TG--ATGA-TTAAAA-A----AT-AA-TGC-A--TTGGACAT-CAGGGACT--ATAGAA-TCTA---TTAACCG---ANAGGCTTTC-CT-CGC----G----C---A--GGAT-CAGA--TC---TTG------GGTAT----C-G-ATAT-TT-AGTTT-G--TAGA-TT----TTTTTAAAAA--TAAAAC-TAC-TT---AAT-GG--C-ACC---------ACAA-ATTCAC--T-C-AGA-AC-TA--TATCAACA-GCCTT-GGG-TTCAGCCACTACGTNTGC
gi|1 : TTAAGG-TGTTTCTGTTGGT-GAG-ATTGGAC-CTCCTCTCTTT-CATTGGAAT--TTAAAACTT--TTTTTTTAAACAT-AACCCATTCTT--G-AACTCATTTCAT-CT-TGACCAAAGAAAGGTTAATTCCAAA-A-CAACTGAAAGGA-A---AAAGGGG-------------TAT--GT-T-GTGACAGG--AC-T----TTAAA-GAGTT-ACAGCCCAT-CAAGT-TTGATATCCCTTTTGCTCTGAA-AG-TTAAAAC---TTTTTTTGTC-GTTTGAAAGGGATCA-CCAT--T-TTCCACCAAGTAAA-CACAATAGAAATT-AAAACAAATA-------TTCATTGACAGCCTTTTAGAGAATTAAAT-CTCA-TTATCTTTTATTT----CAATGAA-AAATTAATTCGATT-AA--TTTATAA-TT------TTTT--AT--AACT--TTTAC---A-TAATTT---TTTTTTCAAATTTATTT-CTAGAAA-------TAGAATAACG-AGATT-ATCTCAG-CATATATTA-GGAGCTTGGACGAAA--AAAA-TG--AC-CAAATTTTTATGT---C----AAATTTTTGATC--------AAGAAAA-TTCA---ATATTATTAGGCGGAAGAGTCCT-TGAATTAAAAC-TTGGTTTCGTG--G---AA----ATGCCAA---TGGCAG-ATT-------CGAA-A-CAACTTAGGTTA--CTACTTTGTGGCTCATTTTTGATTTAGAGGGTGAAAAGGAAAAAA-------A-GTTCGGTGG----GGTCATATTA-GTT-TGTGCATTTGGGAAC-AAAGTTTTTATGGGATAACCTATTTTTGTG--T-CCCGCACCCGCCTTCTC----ATTTCTTGATCAT-AAATT----TCAACATCGGATT-ACAA-ATATATGACTT-TTG--TATTA--AAA-----TGGTATTC-TT-TCCTGGTGAAT---TTCTAA-TTATTTCAGGCAA-ATTTTATGG-TATTTATTT-TAATCATATAACTACTTACAT--GTTC-TCT-TAAAAAGG--------AT-AAATAATTGTG--TA--AACAATACTCAATTCA-ATGATATAAATTC--ATT--TATC--ACTTTCGA--GAA-TAC-ATGTTG--AAACTAAAA--TGCCACTTAAAGTTTTAA
gi|1 : CCAAATTTTTGTAT--GA-TAGA-----ATATCAAA-CGGTA-TTATTTAGAG----TTGCGCTTTATTA-GACACC-AATTTTTAAACTCAG-T------CAAACC-TTCCAT-GC-ACCACCTTAGAGTGAAGAGATGTGATACTTTC--CT------GGT-ATGATTAGATTTCCG-GT-AAT-GAT-G-C-ACCGGGGATGA---AT-C-CGGGTAATGTTA--TTATCATAACAATTCCCGTTCGTG--GTTGA-CAAA-ATTGG-ATGAT-GTTCT-ACAA----AAAGCAG--ACCGGATAAA-GACA--CAAATTATGTCGA-TCTGGTA-GCGTCAAAAGAAATATA------AAAATCAACAAAATGAATCT-TTTTTGTTTTTTTAGACACGA-CACCGCGCCA---------TATTTTCTTTCT-------------AAAGAATGCCGATACAT---------TAAACTATT------------TTAGCCTTCTG-GA----TT-CGTTTTTGCT--ATGAA---CTCCATAATGGCAATTATT-TA--CGTTGGT--GATTTTTTTA----AAAA-CTCTGATTACTAGTT--ATTAC-----CCTT---TTGTATTCAAAAA--TGTTATGA-TTAAGA-A----AT-AA-TGC-ACATTGGACATTCAGGGACT--ATAGAA-TCTA---ATTACCG------GGTCTTCGCTGCGC----GGCTAC---A--GGAT-CAGA--T-----TG------GGTAT----C-GCATAT-TT-AGTTTTG--TAGT-TTAGATTTTTTAAAAA--TAAAAC-TAC-TT---AATAGA--CAACT---------ACAATATTCA-----C-AGA-ACTTAT-TATCAACA-GCCTT---G-TTCAGACACTATGcttattgtccaactcttccatgccactgtgacattgacctttgatcttttactgatctctcaaaaatatcacaacaagcgatgttcccttctttagtgtcaatatcccttatgtccaaatttttgtatgatagaatatcaaacggtattatttagagttgcgctttattagacaccaatttttaaactcagtcaaaccttccatgcaccaccttagagtgaagagatgtgatactttcctggtatgattagatttccggtaatgatgcaccggggatgaatccgggtaatgttattatcataacaattcccgttcgtggttgacaaaattggatgatgttctacaaaaagcagaccggataaagacacaaattatgtcgatctggtagcgtcaaaagaaatataaaaatcaacaaaatgaatcttttttgtttttttagacacgacaccgcgccatattttctttctaaagaatgccgatacattaaactattttagccttctggattcgtttttgctatgaactccataatggcaattatttacgttggtgatttttttaaaaactctgattactagttattacccttttgtattcaaaaatgttatgattaagaaataatgcacattggacattcagggactatagaatctaattaccgggtcttcgctgcgcggctacaggatcagattgggtatcgcatatttagttttgtagtttagattttttaaaaataaaactacttaatagacaactacaatattcacagaacttattatcaacagccttgttcagacactatg
gi|10 : ttaaggtgtttctgttggtgagattggacctcctctctttcattggaatttaaaactttttttttaaacataacccattcttgaactcatttcatcttgaccaaagaaaggttaattccaaaacaactgaaaggaaaaaggggtatgttgtgacaggactttaaagagttacagcccatcaagtttgatatcccttttgctctgaaagttaaaactttttttgtcgtttgaaagggatcaccattttccaccaagtaaacacaatagaaattaaaacaaatattcattgacagccttttagagaattaaatctcattatcttttatttcaatgaaaaattaattcgattaatttataattttttataacttttacataatttttttttcaaatttatttctagaaatagaataacgagattatctcagcatatattaggagcttggacgaaaaaaatgaccaaatttttatgtcaaatttttgatcaagaaaattcaatattattaggcggaagagtccttgaattaaaacttggtttcgtggaaatgccaatggcagattcgaaacaacttaggttactactttgtggctcatttttgatttagagggtgaaaaggaaaaaaagttcggtggggtcatattagtttgtgcatttgggaacaaagtttttatgggataacctatttttgtgtcccgcacccgccttctcatttcttgatcataaatttcaacatcggattacaaatatatgacttttgtattaaaatggtattctttcctggtgaatttctaattatttcaggcaaattttatggtatttattttaatcatataactacttacatgttctcttaaaaaggataaataattgtgtaaacaatactcaattcaatgatataaattcatttatcactttcgagaatacatgttgaaactaaaatgccacttaaagttttaacttattgtccaactcttccatgccactgtgacattgacctttgatcttttactgatctctcaaaaatatcacaacaagcgatgttcccttctttagtgtcaatatcccttatgtCTCATTTT---------TAATGA-----AAAAAA-------ATGTC-AG-GG----G-------TA-G-T--GTGCG-TTGG-AAC-AAAGTTT---TG----AACC-A-TTTTGAG--TGCC--CATCC-CCTTTTC----ATTT-T-G-TCAT-AAATT----TCAAC-TC-AATA-ACAATAT-T-CAA--T-TTGT-TAT----AAAA----T-GCATAT-TC-TTC-----AAT---TCATAT-TTA-------CAA-ATCATAT-G-TATTTA-TT-CCATCGTATAA
gi|11 : tcTTAAGGATGTT-CT-CTGGT-G-GTAT--TAT-TTT-----TTT-AAAGT-AAT--A--AAAAAT--AAT------A-AT-AACCCAT-TTT----AACTTATT-CAT-CT-TGATCA--GAAAGAC-AATTTAAAC-A-CAC-------GA-A---TA---AG-------------TAT--AT-CAGTG-T-GGT-ACATGTAGTCAAA-GTGTT-ACAGCTCCT-GAAAG-TTA----GCCCTTTGCT--GAA-AG-TTA---TATATATTTT---C-TTTgac
gi|12 : gTTTTAA-C--AG-C------CAA--C-TTTCAT-GC-GACCATAATGA----AGATATATC-CACTT-C--CT------GGT-AT-AT---ATT--CT-GT-TAT-GAT-GAC-ACT----ATGACTCAT-CGC-----ATT--T--TT--TGT--------CTGT----G--ATT-A-CAAA-TT-AA-ATG-T-AG-GT-ACAAAACGA--GCAG--AAACG
gi|13 : agTTAAGGATGTT-CT-CTGCT-T-TTAT--GAAGTTT-----TTT-CA--A-AATAAT--AAACTT--TTT-----AA-AT-AACCCAT---T--ATAACTCATT-CAT-CT-TCACCA--GGAAGGC-AATTTAAAC-A-CAA-------GAGA---AG---GG-------------TGC--AT-TGGTG-T-CG--AC-T----TC-CA-GAGTT-ACAGGCCCT-ggaaacag
gi|14 : TTGAAA---ATCA-CCAT--T-TTCCAC-AAGAAA--CACAATG-----T-AAACCAAATA-------ATC---------------------------TCCA-TTATCTTTTCGTC----CA-TGAA-AA-TCAGT-CA--T-AA--TTTATAA-TT------TT-G--AT--AACA--TTTACCCAA-AAA--------TGTTCAAC---AATT-CTTT-AA-------T--AATA
gi|15 : c---AATT-CTAG-AAATACACGT--AATAAC--TGATT-ATCT-AG-CAT-TATT--GG---------AGAA--AAC--TG--GCACAAA-TGTTAAGT---C----ATATTTT--GTC---------A-AAAT-TTCA---AT-CTA----GC---t
gi|16 : tttgtcAAGGATGTT-CT-CTGGT-GAG-AT--GAC-TTT-----TTT-CATTC-GAT--T--AAACTT--TTTAAA--AA-AT-AACCCAT-CTTA-A-AACTCATT-CAT-CT-TGACCA--G--AGGC-AATTCAAA
gi|17 : ta-CACGACCGCCGCGCCA---------TAT-TTCT--CT-------------AA-------------AT---------T-------TGATAGATCTATTTTA--CCCCGG-GA----TT-CGTTTT-GATGACTAAA---TTC----------ATTGTT-TA--CGTTGGT--GATTTTTT-
gi|18 : AT-CT-TGATCA--GAAAGACAA-TTTAAAC-A-CAA-------GT-A---AA---GGATACATGTATATATATAAGT-AAGTG-T-GG--AC-T----TTAAAAGAGTT-ACCGCCCCT-CAAAG-
gi|2 : TTAAGGATGTT-CT-CTGGTTGAG-AT--GAAATTT-----TTT-CAT-G-AAT--TTTAAACTT--TTTT----AA-AT-AACCCAT-CTT--A-A-CTCATT-CAT-CTATGACCA--GAAAGGCCAATTCAAAC-A-CAA-------GA-A---AAA--GG-------------TAT--GT-TAGTG-C-GG--AC-T----TTAAA-GAGTT-ACAGCCCCT-CAAAG-TTA-----CCCTTTGCT--GAA-AG--TA---C---TTTTTT---CTTTTTAAAA---ATCA-CCATC-T-TTCCAC-AAG--AA-CACAATA-----T-AAAACAAATA-------TTCAT-GACAGA---------A----AAT-CTCA-TTATC--TTA-TT----CA-TGAA-AA-TTAAT-CA--TGAA--TTTATAATTT------TT-T--ATTAAACT--TTTAC---ATTAA------TTTTTTCAAA---AATT-CTAA-AA-------T--AATAAC--AGATT-ATCT-AG-CAT-TATTG-GG---------GGAACGAAAA-CGACACACAAA-TT---ACT---CGCTAAAATTTT--GTCCACGCAAAAA-AAAA-ATAAAACAT-ATA----GC---AGAGTTCCTTGAATT-AAAC-T---TTTTTTG--ATCGAACACTTTGCCAAAGCC-ACAG-ATTACCATCATAAA-A-CA--------TATCTT--CTT---GCTCATTTT---------GAATGA-----AAAAAAAAAACACA-GTT-GA-GGCCAAG-------CAGG-TATGTGCA-TT-GGAAC-AAAGATT---TG----AA-CCA--TTTGTGA-T-CC--CACCC-CCCTCTCTCCAATCT-TTG-TCATAAAATTTATATCAACATC-AATTAACAATAA-TATGA--TGCTGTCCATACTAAAA-----TGATATTTCTCACTC-----AATCA-TCATATAATA-------CAA-ATTTAA----TATTTA-TTATAATCATATAACC------AT--ACTGATC----AAAAGG--TAAAAAAT-AAA-AATATTGAATACTTACAA-A--CAA---ATA----ATAA-TTCAAATTAATATC--ACT---GAAGGAA-TACAATAGTGG-AAAC--AAATTTG-CAC-AAAC---TTAA
gi|2 : CCAAATTTTTGTTTCCGAATAGATAACAA----AAA-AAGTACCT---T-GAG-----TGTCCTT----C-GAACAC-AATCCTTTAAC--AG-TAATAACCAA--CATTCCATCGCAAAACAC--GGA----AGAGA-----TACTT-CAACTGACCAAGGT-A--AT--GATTTCAC-GGAAAT-GATCGGCAACCA---ATGA---AT-C-C-----ATG--ATCTT--TATAACCATTCCTGT----GCCGTT-A-CAAACAT-GGAATG-TGAT-CCAACAA----G--ACAGAAAACCGATAAGAGA-AACCAAATTAT--TGA-TCTAGTAGGCGC--AAAGAAATATACATGTTAAAATCAACGAAATGA-TCTGTTGTCATTT-----G-CACGAACGCC-CACCGCCCAACCAATATATTCT--CTAAACCTGACGACCAA------------TATCAAACTCTAT-------T------------TTA--CCTCGGCGAAACCTTACG-TTT-GATGAATAAAACTTTC----------ATGATTATACCCGCTTGTAGGAACTTTT-ATACCAAAACCTCTGAT-ATTA---GAATTACACATACCATATATTG-ATTCAAAAACCTG--ATGA-TTACAA-ATACCATAAA-TGCAA--TTGAACAT-CAAGGACTCAATAGAA-AACA---TCAACTA---CCGGGCTTCC-TG-CGCTCAGG----C---AATGGATACAGAATCC---TTGAGAAGAGGTATCAGAC-A-ATAT-TTCAGTTT-G--TAGA-------TCTTTAGAAATCTAAAACTTACGTTCCAAAT-AGAAC-ACCAATCCTACAACAA-ATTCACAAT-CAAGA-AC-TACCCATCAACA-G-CTT-GGGTTTCAGCCcattgtcccaatttcatgcccctgtgacattgacctttgaactttctgacatcccataaatattaacaagtgacaatgtcccttctctagtgcgtatcgatatgtctccaaatttttgtttccgaatagataacaaaaaaagtaccttgagtgtccttcgaacacaatcctttaacagtaataaccaacattccatcgcaaaacacggaagagatacttcaactgaccaaggtaatgatttcacggaaatgatcggcaaccaatgaatccatgatctttataaccattcctgtgccgttacaaacatggaatgtgatccaacaagacagaaaaccgataagagaaaccaaattattgatctagtaggcgcaaagaaatatacatgttaaaatcaacgaaatgatctgttgtcatttgcacgaacgcccaccgcccaaccaatatattctctaaacctgacgaccaatatcaaactctattttacctcggcgaaaccttacgtttgatgaataaaactttcatgattatacccgcttgtaggaacttttataccaaaacctctgatattagaattacacataccatatattgattcaaaaacctgatgattacaaataccataaatgcaattgaacatcaaggactcaatagaaaacatcaactaccgggcttcctgcgctcaggcaatggatacagaatccttgagaagaggtatcagacaatatttcagtttgtagatctttagaaatctaaaacttacgttccaaatagaacaccaatcctacaacaaattcacaatcaagaactacccatcaacagcttgggtttcagcctaaccggccataa
gi|20 : ttaaggatgttctctggttgagatgaaattttttcatgaattttaaacttttttaaataacccatcttaactcattcatctatgaccagaaaggccaattcaaacacaagaaaaaggtatgttagtgcggactttaaagagttacagcccctcaaagttaccctttgctgaaagtacttttttctttttaaaaatcaccatctttccacaagaacacaatataaaacaaatattcatgacagaaaatctcattatcttattcatgaaaattaatcatgaatttataattttttattaaacttttacattaattttttcaaaaattctaaaataataacagattatctagcattattgggggaacgaaaacgacacacaaattactcgctaaaattttgtccacgcaaaaaaaaaataaaacatatagcagagttccttgaattaaactttttttgatcgaacactttgccaaagccacagattaccatcataaaacatatcttcttgctcattttgaatgaaaaaaaaaaacacagttgaggccaagcaggtatgtgcattggaacaaagatttgaaccatttgtgatcccacccccctctctccaatctttgtcataaaatttatatcaacatcaattaacaataatatgatgctgtccatactaaaatgatatttctcactcaatcatcatataatacaaatttaatatttattataatcatataaccatactgatcaaaaggtaaaaaataaaaatattgaatacttacaaacaaataataattcaaattaatatcactgaaggaatacaatagtggaaacaaatttgcacaaacttaacattgtcccaatttcatgcccctgtgacattgacctttgaactttctgacatcccataaatattaacaagtgacaatgtcccttctctagtgcgtatcgatatgtctTTCAC--T-C-AGA-AC-TA--TATCAACA-GCCTTGGGG-TTCAGCCATTA-GTATGCtaaccggccataa
gi|3 : TTAAGGATGTT-CT-CTGGT-----------T-TTT-----TTT-C-TTG-AAT--T--AAACTT--TTT-----GA-AT-AACCCAT-TTT--A-AACTCATT-CAT-CT-TGACCA--GAACGGCAAATTCAAAC-A-CAA-------GA-A---AA---AG-------------TAT--GT-TAGTG-C-GG--AC-C----TTAAA-GAGTT-ACAGCCCCT-GAAAG-TTA----CCCCTTTGCT--GAA-AG-TTA---C---TTTTTT---C-TTTTAAAA---CTTA-CCAT--T-TTCCAC-AAGAAAA-CACAATA-----T-AAAACAAATA-------TTCAT-GACA-T---------AAT--AAT-TTCA-TTATCTTTTATTT----CA-TGAA-AA-TTAAT-CA--T-AA--TTTATAA--T------TT-T--AT--AACT--TTT-C---A-TAA-TT---TTTTTTCAAA---AATT-CTAG--A-------T--AATAAC--AGATT-ATAT-AG-CAT-TAT---GG---------GGAA--AATA-TG--ACCCAAA-TTTTAAGT---C----AAA-TTT--GTC--------AA-AAAA-TCCA---AT-CTA----GCA--AGAGTTTC-TGAATT-AAAC-----TTTTGTG--A---AA----TTGCTAC---T-GTAG-ATT-------TGAA-ATCA--------TA--TT--TTT---GCTCA-TTT---------GAATG------AAAAAA-------A-GTT-GG-GG----G-------TA-G---TGTGCA-TTGGGAAC-AAAGTTT---TG----AACCCA-TTTT-TG--T-CC--CACCC-CCTTC-C----ATCT-TTG-TCAT-AAATT----TC-ACATC-AATT-ACAATAT-GATGA--T-TTGT-TAT----AAA-----T--TATTT-CC-TTC-----AAT---TCATAT-TTA-------CAA-ATTTTAT-G-TATTTA-TC-TAATTATATAACCA-----ATCAACTG-TC--TAAAAAGG--T-----AT-AAATAAT-TTG--TA--TATGA-A--CAA---A-A----TTAATTCC--ATT--TATC--ACT---GAA--AATTAC-GTGGTGGAAAAC--AAG--TG--AC-TAAA---TTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAATTTTGTTTT--GAATAGA-----A----AAACAAGTA-CT---T-GAG----TTATCCTT----A-AAAACC-AATTTTT-AAC--AGTT------CAA--C-TTCCAT-GC-ACCCA-TTGGA----AGAG-TGTG-TACTT-C--CT------GGT----AT--GGTTT-TC-G--AAA-GAT--GC-ACC----ATG----AT-C-C-----ATG--A--TT--AAT-AC-ATTCCC-T----G--GTT-A-CAAA-AT-GG-ATG-T-AT-CT-ACAA----A--GCAC--AACCGATAAG-GA-A--CAAATT-T--TGA-TCTAGTA-GCGC--AAAGAAATATA------AAAATCAACAAAGTGA-TCC-TTATCG---TTTTAG-CATGAACGCCGCGCCG---------CATATTCT--CT-------------AA------------CAT---------T-------T------------TTA--CCTCGG-GA----TT-CATTTT-GATGAATAAA---TTC----------ATTGTT-TA--CATTGGT--GATTTTTT-A----AAAA-CTCTGAT-AC---TTGA--------TACCCT---TTTTATTC-AAAA--TG--ATGAGTTAAAA-A----AT-AATTGC-A--CTGGACAT-CAGGGACT------AA-T-TA---TT--CCG---AAAGGCTTTC-CT-CGC----G----C---A--GGAT-CAGA--TCAATTTG------GGGAT----C-G-ATAT-TT-AGTTT-G--TAGATTT----TTTTTAAATA--TAAAA--TACTTT---AAT-GG--C-ACCTT-------ACAA-ATTCAC--T-C-AGT-AC-TA--TATCAACAGGCCTT-GGG-TTCAGCCACTACGTTTGC
gi|4 : TTAAGGATGTT-CT-TTGGT-GAG-AT--GAAATTT-----TTT-CATTG-AAT--T--AAACTTCCTTT-----GA-ATTAACCCAT-CTCTGG-AACTCATT-CATTCT-TGACCA--GAAAGGCAATTCCAAACCATCAA-------GA-ATAAGA---GG-------------TAT--GTGTAGTG-C-GGGGAC-TG---TTAAAAGAGTTGACAGTCCCTTCAAGGGTTA----CCC-TTTGCCTGGAATAGCTTA---C---TTTTT----C-TTTGGATAT--ATCAGCCATATTATTCCAC-AAGAAAATCA-AATA-----TCAAAACAAATACCACCCATTCAT-GACAGT---------AAT--AATCTTCAATTATCTAGTATCTTCCTCACTGAATAA-TTAAT-C---T-AACTTTTATAA-TTATGATATT-T--AT--AGCTGCTTTAC---A-TTA-TTGACTTTTTCCAAA---AAATACGAC-AA-------T--AATAACTCAGATTTATCT-AGGCAT-TATTGTGG---------GGAA--AACAATG--ACACAAA-TTTTAAGTTGTC----AAATTTT--GGC--------AA-AAAAGTTCA---AT-CTA----GC---AGAGTTCCGTG-ATT-AAACTT---TTTTGTGGAA---AA----TTGATAAT--C-GCAGAATT-------TGAATG-AA--------T---TT--TTT---GCTCA--TT---------GAATG-------AAAAA-------A-GTT-AG-GG----A-------TA-G---CGTGCA-TT-GGAACAAAAGGTT---TG----AACCAT-TTTTGTGTCT-CC--CACCC-CTTTCTC----ATTT-TT--TCAT-AAATT----TCAAC-TC-AAAT-ACAATA--TATGA--T-TTGTATAT----AAA-----T-ATATTT-TC-TTC-----AATTTATCATAT-TTA-------CAATTTTTTAT-GATATTTA-TT-TAATCATATA---A-----AT--ACTG-TCT-TAAAAAGGTCT-----ATCAAAT-AT-TTGTATA--TACAA-A--CAA---T-A----ATAA-TTA--ATT--TATTAAACT---GAAGAAA-TAC-A--GTGAAA
gi|5 : AAGGATGTT-CT-CTGGT-G-GTGT--GAA-TTT-----TTTTCAAAG-AAA--T--AAACTC--TTT-----GA-AT-AACGCAT-TTT--A-A-CTCATT-CAT-CT-TGACCA--GAAAGGCAA-TTTAAAA-A-CAA--------A-A---AA---GG-------------TAT--GT-CAGTA-T-GA--AC-T----TTAAA-GAGAT-ACAGCTCCT-CAAAG-TTT----CCCCTTTGCT--GAA-AG-TTA---C---TTTTTT---T-TTTCGAAA---ATCA-CCAT--T-TTCTAC-AA-AAAA-CACAATA-----T-AAAACAAATA-------TT-AT-GACA-A---------AAT--AATATTCA-TTATCATCTATTT----CA-TGAA-AA-TTAAT-CA--T-AA--CGTATAA-TT------TT-TACAT--AAAT--TTT
gi|6 : cCCAA--TTTTGTTT--GAATAGA-----A----TAA-AAGTA--T---T-GAGGGGGCTGTCCTT----AAGAAACCCAATTTTGAAAC--AG-T------CAA--C-TTCTAT-GC-ACCCACTTGGA----AGAGATGTG-CACTT-C--CT------GGTAA--AT--GATTTTCCGG--AATGGAT-GGC-ACC----ATGA---ATCC-C-----ATG--C--TT--CTTAGAATTTTCTGT----G--GTT-ACCAAA-AT-GG-ATG-T-AT-CT-ACAAC---A--GC-G--AACCGATAAC-AA-A---AAATTAA--TGAGTCTAGTA-GCGC--AAAGAAgtcaaga
gi|7 : tattctattttaatctTC-AATT-ACAATAT----GA--T-TTGT-TAT----AAAATGCAT-ATATAT-TC-TTC-----AAT---TCATAT-TTA-------AAA-ATTTTAT-G-TATTTA-TT-TTATCACA-AA--A-----AT--ACTG-TCTAAAAAAAAG--T-----AT-AA--AATATTG--TA--CACAA-A--C-------A----AT-ATTTC--ATT--TATC--ACT---GAA-GAA-TAC-AT-GTGG-AAAC--ATA--TGCCAC-TAAA---TTAA
gi|8 : GTA-CT---T-GAG----TTATCATT----A-GAAACC-AATTTT--AAC--AG-T------CAA--C-TTCCAT-GC-ACCCACTTGGA----AGATATGTG-TACTT-C--CT------GGT-A---T--GATTTCCC-G--AAT-GAT-GAC-ACC----ATGA---AT-C-C-----ATA--A--TT--TATAACATTCCCTGT----G--GTT-A-CAAA-AT-GG-ATG-T-AT-CT-ACAA----A--GCAG--AACCGATAAG-AA-A--CAAATCAT--TGA-TCTAGTA-GCGC--AAAGAAACAT-------AAAATCAACcattgtccaattccatgcactgtgacattgacctttgaccttctgactccaaaattcactggtattaagccaatgcc
gi|9 : tcttatgtccaaatttggtttAAA--TG--ATGA-TTAAAAAA----AT-AA-TGC-A--TTGGACAT-CAGGGACT--ATAGAATTCTAAATTTAGCCGAGAAGAAGCTTTC-CT--GC----G----CTGGA--TGAT-CAGA--T----TGG------GGTAT----CAG-ATATGTT-AGTTT-GGTTAGA--T----TTTTTAAAAA--TAAAA--TAC-TT---AA--------A-----------ACAA-AATCAC--TCC-AGACAC-TA--TATCAACA-TCTTT-GGG-TTCAGC
blockSeqs : . . TGAGATGAAA . T AGT AAT CC AAAA . T T TGG A . T A . A A C T . G TAA A ATACATGTATATA AA G T GG A GTAG A G T G G C TG T C TATA . T T G AT A . A T . C CCACCCA . GTAAT C A T G TCCT C T . . A G CT T ATGATA TAC TA GC CCA T TTGAC . A T ATACACGT TC T . G . TGT . CG CAA AC A . CGCTA . CACGCAAAA . G AAC . . A T A . TT ATCGAACACT AGCC A ACCATCATAAAACATATC . . T . A AAAACAC T . . CCAAGCAGGTAT . G A T . . CAT TC G . . TCCA . TG A TATA A . A ATA . G C ACTA ATGCATA C A . TTA A . T GA . A CCA CA A TAA TAAAAA C ATA A AA CT . . ATA T AA AA AA . AG T AATA GA . TT C . . A CC A TAACAA C CCT . GGGGC AA C TA . TAATAAC . A C A TA . . . AA GACCAA AT . C G GA G CGG A A CTC C G . ATC T AACCA . CC . C C . A . G . A AACGA AA A . AC . G G . ACATGTT . G G TTT . C G CCCAACCAA A . AAACCTGACGACCAATATCAAACTCTATT . C AACC A T . G ACT . A CC AG ATACC C . TAGAATTACACAT A ATA T A CC . G ATACC A T AA . CAA TTCTAAATTTAGCCGAGAAGA TGC TCAGGCAAT A ATCCTTGAGAAGA CAGACA G C . GT TTT TC CT GTTCCAAATAGAACACCAATCCTACA . AAT A C . CC G G T C T
blockSeqs : . . TTTATGAAG . . TTC TTT . TA . . C AT A . . . . C A . . . . . . . . . T T . G A . . . C C . . . C . . . . C . . A . . . . . TAAT A . T T . . . . . A . . . . G . . . . TT . . G T . . . . . TG . . AA . A . TGTC . A . . . . . . G A . T GAAAA TC . TGAAATCATA . . T . A . . . . GTAGT . G . A . . ATT A . . . . . TG . . A . . TGA . . A . ATG . . . CA . . . G . . CC . . TT TCT . AA A TA . . . AA T . . . . AG . GTG AA . . . . . A . A A . CT . T C . TT . TT . . . . CT . . . . . AA . T . T . GA . . . . . . T T AGAAT . . . . . . . . . . . CA . . . . . . . . A . . A T . A G . A . AAATTTGATAGATCTATT . . . . T . G . . . . . A . . TTGAT C . . . . . . AA . . A . A AACATCAACTACCG CTC GCTGGA . TCAATTTG CAG . . . . T . . TTTAATGGCACCTT . TC . . . . . . . .
blockSeqs : . . GAGATGAAA . . TTG A . A . . C AA A . . . . A A . . . . . . . . . T . . . . . . . C C . . . C . . . . . . . A . . . . . AAAT . . T T . . . . . A . . . . T . . . . . . . A T . . . . . T . . TA . C . C . A . . . . . . . . . . AAA T . TGAATGAAT . . . . . . . . . GTAGT . . . T . . AT . . . . . . G . . . . . TT . . . . TGA . . . . . . . G . . A . . T T . AT . . . . . TA . . . . . A . AT G . . . . . . . A A . CT . T A . GA . C . . . . CT . . . . . A . C . . . GG . . . . . . A A AACAT . . . . . . . . . . . G . . . . . . . . . . A . . . . AACATTT . . . . . . G . . . . . . . . A . . A . . TTATTCCGAAA CT GCA . TTGG CG . . . . . . . TTAAA . T . . . . . . .
blockSeqs : . . GGTATTAT . . TTG T . G . . T A A . . . . A A . . . . . . . . . C . . . . . . . C C . . . C . . . . . . . A . . . . . GAA . . A T . . . . . A . . . . T . . . . . . . G T . . . . . . . . C . A . C . . . . . . . . . . . . . . . ATAGC . . . G . . CA . . . . . . T . . . . . TA . . . . TA . . . . . . . G . . A . . . T . A . . . . . A . . . . . A . A G T . . A . T . T . . . . C . . . . . A . . . . . GA . . . . . . C C ACA . . . . . . . . . . . A . . . . . . . . T . . . . . . .
blockSeqs : . . GAGATGAC . . AAG T . G . . C A A . . . . A A . . . . . . . . . C . . . . . . . . . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . C T . . T . . . . T . . . . . . . . . . . . T . . . . T . . . . . . . . . . . G . . . . . . A T . . . . . . . . . . . . A .
blockSeqs : . . GGTGTGAA . . TG T . G . . T A . . . . . . T . . . . . . . . . C . . . . . . .
blockSeqs : . . T . . A T . . . . . . . . . . . . . . . . . . . . . . T . . . . . .
blockSeqs : . . . . .
blockSeqCons : GGTATGAN***** ***** TTG* T**** G***** C* ** ******* *** C** C**** ** C****** *** *** ***** NAAT************ A** T*** TT**** *** N* T********* ** T** ********* ** **** *** ********* ****** GTAGT*************** *** **** AT** ** TG* TA** ** **** ***** ******* G** A******* T** T******* AA* A* ** A********* *** A* ATG* G* CT**** A***** ** ** **** A*** ** ** GA* **** ***** N**** T** **** A****** ** ** T*** **
originalCons : TTAAGGATGTT-CT-CTGGT-GAGTAT--GAN-TTT-----TTT-CATTG-AAT--T--AAACTT--TTT-----GA-AT-AACCCAT-CTT--A-AACTCATT-CAT-CT-TGACCA--GAAAGGCAAATTCAAAC-A-CAA-------GA-A---AA---GG-------------TAT--GT-TAGTG-C-GG--AC-T----TTAAA-GAGTT-ACAGCCCCT-CAAAG-TTA----CCCCTTTGCT--GAA-AG-TTA---C---TTTTTT---C-TTTTGAAA---ATCA-CCAT--T-TTCCAC-AAGAAAA-CACAATA-----T-AAAACAAATA-------TTCAT-GACAGN---------AAT--AAT-TTCA-TTATCTTTTATTT----CA-TGAA-AA-TTAAT-CA--T-AA--TTTATAA-TT------TT-T--AT--AACT--TTTAC---A-TAA-TT---TTTTTTCAAA---AATT-CTAG-AA-------T--AATAAC--AGATT-ATCT-AG-CAT-TATTG-GG---------GGAA--AANA-TG--ACACAAA-TTTTAAGT---C----AAATTTT--GTC--------AA-AAAA-TTCA---AT-CTA----GC---AGAGTTCC-TGAATT-AAAC-T---TTTTGTG--A---AA----TTGCCAA---C-GCAG-ATT-------TGAA-A-CA--------TA--TT--TTT---GCTCATTTT---------GAATGA-----AAAAAA-------A-GTT-GG-GG----G-------TA-G-T-TGTGCA-TTGGGAAC-AAAGTTT---TG----AACCCA-TTTTGTG--T-CC--CACCC-CCTTCTC----ATTT-TTG-TCAT-AAATT----TCAACATC-AATT-ACAATAT-TATGA--T-TTGT-TAT----AAA-----T-ATATTT-TC-TTC-----AAT---TCATAT-TTA-------CAA-ATTTTAT-G-TATTTA-TT-TAATCATATAACCA-----AT--ACTG-TCT-TAAAAAGG--T-----AT-AAATAATATTG-ATA--TACAA-A--CAA---A-A----ATAATTTC--ATT--TATC--ACT---GAAGGAA-TAC-ATGGTGGAAAAC--AAA--TGCCAC-TAAA---TTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAATTTTTGTTT--GAATAGA-----A----AAA-AAGTA-CT---T-GAG----TTGTCCTT----A-GAAACC-AATTTTTAAAC--AG-T------CAA--C-TTCCAT-GC-ACCCACTTGGA----AGAGATGTG-TACTT-C--CT------GGT-A--AT--GATTTCCC-G--AAT-GAT-GGC-ACC----ATGA---AT-C-C-----ATG--A--TT--TATAACAATTCCCGT----G--GTT-A-CAAA-AT-GG-ATG-T-AT-CT-ACAA----A--GCAG--AACCGATAAG-GA-A--CAAATTAT--TGA-TCTAGTA-GCGC--AAAGAAATATA------AAAATCAACGAAATGA-TCT-TTNTCGTTTTTTTAG-CACGAACGCCGCGCCG---------TATATTCT--CT-------------AA------------CAT---------T-------T------------TTA--CCTCGG-GA----TT-CGTTTT-GATGAATAAA---TTC----------ATTGTT-TA--CGTTGGT--GATTTTTT-A----AAAA-CTCTGAT-ACTA-TTGAATTAC---TACCNT---TTGTATTCAAAAA--TG--ATGA-TTAAAA-A----AT-AA-TGC-A--TTGGACAT-CAGGGACT--ATAGAA-TCTA---TTAACCG---ANAGGCTTTC-CT-CGC----G----C---A--GGAT-CAGA--TC---TTG------GGTAT----C-G-ATAT-TT-AGTTT-G--TAGA-TT----TTTTTAAAAA--TAAAAC-TAC-TT---AAT-GG--C-ACC---------ACAA-ATTCAC--T-C-AGA-AC-TA--TATCAACA-GCCTT-GGG-TTCAGCCACTACGTNTGC
finalCons : TTAAGGATGTT-CT-CTGGTGGTATGAN-----TTT-----TTT-CATTG-AATT----AAACTT--TTTG-----A-AT-AACCCATC-TT--A-AACTCATT-CAT-CT-TGACCA--GAAAGGCAAATTCAAAC-A-CAA-------GA-A---AA---GG-------------TAT--GT-TAGTGC--GG--AC-T----TTAAA-GAGTT-ACAGCCCCT-CAAAG-TTAC----CCCTTTGCT--GAA-AG-TTAC------TTTTTT---C-TTTTGAAA---ATCA-CCAT--T-TTCCAC-AAGAAAA-CACAATA-----T-AAAACAAATA-------TTCAT-GACANAAT------------AAT-TTCA-TTATCTTTTATTT----CA-TGAA-AA-TTAAT-CA--T-AA--TTTATAA-TT------TTT---AT--AACT--TTTAC---A-TAATT----TTTTTTCAAA---AATT-CTAN-AAT---------AATAAC--AGATT-ATCT-AG-CAT-TATT--GG---------GGAA--AANA-TG--ACACAAA-TTTTAAGT---C----AAATTTT--GTC--------AA-AAAA-TTCA---AT-CTA----GC---AGAGTTCC-TGAATT-AAAC-T---TTTTGTG--A---AA----TTGCCAA---C-GCAG-ATT-------TGAA-A-CA--------TA--TT--TTT---GCTCATTTT---------GAATG------AAAAAA-------A-GTT-GG-GGGTAGT---------------GTGCA-TTGGGAAC-AAAGTTT---TG----AACCAT--TTTGTG--T-CC--CACCC-CCTTCTC----ATTT-TTG-TCAT-AAATT----TCAACATC-AATT-ACAATATA--TGA--T-TTGT-TAT----AAA-----T-ATATTT-TC-TTC-----AAT---TCATAT-TTA-------CAA-ATTTTATG--TATTTA-TT-TAATCATATAAA-------AT--ACTG-TCT--AAAAAGGT-------AT-AAAA-ATATTGA-TA--TACAA-A--CAAA---------ATAATTTC--ATT--TATC--ACT---GAA-GAA-TACATG-GTGG-AAAC--AAA--TGCCAC-TAAA---TTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAATTTTTGTTT--GAATAGA-----A----AAA-AAGTACT----T-GAG----TTGTCCTTA-----GAAACC-AATTTTTAAAC--AG-T------CAA--C-TTCCAT-GC-ACCCACTTGGA----AGAGATGTG-TACTT-C--CT------GGTA---AT--GATTTCCC-G--AAT-GATGA-C-ACC----ATGA---AT-C-C-----ATGN----TTT--ATAACAATTCCCGT----G--GTT-A-CAAA-AT-GG-ATG-T-AT-CT-ACAAA------GCAG--AACCGATAAG-GA-A--CAAATTAT--TGA-TCTAGTA-GCGC--AAAGAAATATA------AAAATCAACGAAATGA-TCT-TTNTCGTTTTTTTAG-CACGAACGCCGCGCCG---------TATATTCT--CT-------------AA------------CAT---------T-------T------------TTA--CCTCGG-GA----TT-CGTTTT-GATGAATAAA---TTC----------ATTGTT-TA--CGTTGGT--GATTTTTT-A----AAAA-CTCTGAT-ACTA-TTGAATTAC---TACCNT---TTGTATTCAAAAA--TG--ATGA-TTAAAA-A----AT-AA-TGC-A--TTGGACAT-CAGGGACT--ATAGAA-TCTA---TTAACCG---ANAGGCTTTC-CT-CGC----G----C---A--GGAT-CAGA--TC---TTG------GGTAT----C-G-ATAT-TT-AGTTT-G--TAGA-TT----TTTTTAAAAA--TAAAAC-TAC-TT---AAT-GG--C-ACC---------ACAA-ATTCACT---C-AGA-AC-TA--TATCAACA-GCCTT-GGG-TTCAGCCACTACGTNTGC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TAATGACCTTTTAAACCTAGGAATGACATTTACAGTGCTTATATACACAGGCACTTGACGTTTTAAATATATTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222222222 1111 11111 333333 111111 1 1111111 111 2222222222222 11 111111 1 11111 11 1111111 111 111 11 11111 2222222 4444444444444444 1 1111 1 111 22222222222 111 22222 111 2222222 11 11 3333333333 111 11 22222222 111 222222222 111 1111 11111 2 1 111 11 222222222222 33333 1 55555555555555555555555555555 11 111 55555555555555555 44444444444 333333333333 222 1 111 1111 2222 11 11 1111 1111 1 11 1 3333 22222222 11111 222 2222222 33333333 11 2222 222222 33 11 33333333333333333333 11 11 11 111 2222 11 11 1 1 111 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 3333333333 1 111111 22222 222222 11 11111111 1111 111111 2222 22 1 2222 111 11111 11111111 11111 1111 2222222 11 11 11 3333333 1 1 1111 1 444444444 11 888888888888888888888888888888888888888888888888888888888888 11 1 2222 1 1 111 4444444444 1 11 11 222222 1 1 6666666666666666 222 11 11 1 222222 1 1 1111 1 111 333333333333333333333 11111 4444444444444444 1 5555555555555555 22222222 1 1 1 11 4444444 11 22 8888888888888888888888888888 1 1111 11 1
lowQualScore : 9999 5 3333333333333 5 3333 44444 66 000000 5 5 5 222222 5 4 4 66 7 0 5 5 6666666 5 888 333 7777777777777 66 5 888 11 333333 0 5 5 5 66666 1 88 6 6 6666666 111 6 888 6 55 6 6 3 6 66666 6 1111111 6 1111111111111111 3 6 3 3 4444 3 6 6 6 000 6 99 6 00000000000 99 99 0 444 8 55555 8 111 6 1 8888888 99 99 8 8 8 8 0 11 5555555555 444 999 11 5 0 1 8 11111111 111 999999999 8 8 444 8 7777 55555 0 3 0 777 77 999999999999 55555 0 55555555555555555555555555555 33 777 66666666666666666 00000000000 8 8 666666666666 555 8 0 8 1 444 7777 3333 99 8 11 8 0 7777 0 8 8 8 7777 0 0 6 6 6 6 00 99 6 3 0000 55555555 6 6 66666 000 6 1111111 6 777 6 6 99999999 11 8 7777 000000 88 8 999 77 11 8 77777777777777777777 11 11 11 444 0 999 1111 8 33 33 5 0 777 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3 33 3 7777777777 0 666666 8 00000 000000 8 00 99 99999999 99 6 6 6 44 4444 6 6 99 999999 1111 99 5 6 22 6 6 2 6 0000 111 6 6 66666 55555555 0 44444 0 4444 99 6 6 6 6 6 6 6 6 6 3333333 99 8 8 11 0 11 8 8 11 2222222 0 3 3 1 2222 0 9 2 000000000 9 33 222222222222222222222222222222222222222222222222222222222222 33 0 1111 0 3 0 2 777 3333333333 0 33 33 999999 3 3 5555555555555555 1 333 7 7 33 33 0 222222 0 0 4444 0 777 222222222222222222222 33333 4444444444444444 0 3333333333333333 55555555 0 0 0 33 3333333 33 55 2222222222222222222222222222 0 4444 8 8 8 99 8 8 8 2 1
lowQualScore : .... . ............. . .... ..... .. ...... . . . ...... . . . .. . . . . ....... . ... ... ............. .. . ... .. ...... . . . . ..... . .. . . ....... ... . ... . .. . . . . ..... . ....... . ................ . . . . .... . . . . ... . .. . ........... .. .. . ... . ..... . ... . . ....... .. .. . . . . . .. .......... ... ... .. . . . . ........ ... ......... . . ... . .... ..... . . . ... .. ............ ..... . ............................. .. ... ................. ........... . . ............ ... . . . . ... .... .... .. . .. . . .... . . . . .... . . . . . . .. .. . . .... ........ . . ..... ... . ....... . ... . . ........ .. . .... ...... .. . ... .. .. . .................... .. .. .. ... . ... .... . .. .. . . ... ........................................................................................... . .. . .......... . ...... . ..... ...... . .. .. ........ .. . . . .. .... . . .. ...... .... .. . . .. . . . . .... ... . . ..... ........ . ..... . .... .. . . . . . . . . . ....... .. . . .. . .. . . .. ....... . . . . .... . . . ......... . .. ............................................................ .. . .... . . . . ... .......... . .. .. ...... . . ................ . ... . . .. .. . ...... . . .... . ... ..................... ..... ................ . ................ ........ . . . .. ....... .. .. ............................ . .... . . . .. . . . . .
lowQualScore : 6666 0 9999999999999 0 2222 99999 99 555555 0 0 0 000000 0 4 4 11 4 2 0 0 2222222 0 888 888 5555555555555 99 0 000 99 555555 0 0 0 7 77777 0 33 7 7 0000000 777 7 333 7 88 7 7 5 7 77777 7 7777777 7 5555555555555555 3 7 5 2 2222 3 7 7 7 888 7 22 7 22222222222 22 22 8 000 0 22222 0 777 7 0 3333333 22 00 0 0 0 0 8 00 0000000000 000 888 00 6 8 0 0 00000000 888 888888888 0 0 000 0 0000 00000 0 2 0 555 00 222222222222 55555 0 88888888888888888888888888888 88 555 44444444444444444 88888888888 0 0 222222222222 000 0 0 0 0 000 0000 8888 00 0 00 0 8 0000 8 0 0 0 0000 8 6 7 7 7 7 22 22 7 3 0000 22222222 7 7 77777 888 7 7777777 7 555 7 7 22222222 00 0 8888 888888 88 0 666 66 00 0 00000000000000000000 00 00 00 000 8 222 0000 0 88 88 0 0 555 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2 88 2 2222222222 0 222222 0 88888 888888 0 77 22 33333333 22 7 7 7 55 2222 7 7 22 222222 7777 22 2 7 55 7 7 3 7 8888 777 7 7 77777 33333333 3 00000 7 2222 22 7 7 7 7 7 7 7 7 7 5555555 22 0 0 00 8 00 0 0 00 0000000 7 3 3 0 7777 0 2 5 000000000 8 88 555555555555555555555555555555555555555555555555555555555555 88 0 2222 0 2 0 5 555 8888888888 0 88 88 333333 3 3 0000000000000000 0 333 3 3 88 88 0 222222 0 0 8888 0 000 222222222222222222222 55555 8888888888888888 0 8888888888888888 22222222 0 0 0 88 8888888 88 00 8888888888888888888888888888 0 8888 0 0 0 00 0 0 0 0 0
consensus : TTAAGGATGTTCTCTGGT-GGTATG-AN-T----------TTTTT-CATTG-AAT--T--AAACTT--TTT-----GA-AT-AACCCAT-CTT--A-AACTCATT-CAT-CT-TGACCA--GAAAGGCAAATTCAAAC-A-CAA-------GA-A---AA---GG-------------TAT--GT-TAGTG-C-GG--AC---T--TTAAA-GAGTT-ACAGCCCCT-CAAAG-TTA----CCCCTTTGCT--GAA-AG-TTA---C---TTTTTT---C-TTTTGAAA---ATCA-CCAT--T-TTCCAC-AAGAAAA-CACAATA-----T-AAAACAAATA-------TTCAT-GACAG----------AAT--AAT-TTCA-TTATCTTTTATTT----CA-TGAA-AA-TTAAT-CA--T-AA--TTTATAA-TT------TTT--AT--AACT--TTTAC---A-TAATT---TTTTTT-CAAA---AATT-CTAGAA-------TA--ATAAC--AGATT-ATCT-AG-CAT-TATTG--GGG----------AA---AANA-TG--ACACAAATTTTAA-GT---C----AAATTTT--GTC--------AA-AAAA-TTCA---AT-CTA----GC---A-GAGTTCC-TGAATT-AAACT---TTTC-GTG--A---AA----TTGCCAA---C-GCAGA-TT-------TGAA--A-CA--------TA--TT--TTT---GCTCATTTT---------------GAATGAAAAAA--------A--GTT-GG-GG----G-------TAG-T-TGTGCA-TTGGGAACAAA-GTTT---TG----AACC-ATTTTTGTG--T-CC--CACCC-CCTTCTC----ATTT-TTG-TCAT-AAATT----TCAACATC-AATT-AC-AAT-AT-ATGA--T-TTGT-TAT----AAA-----T-ATATTT-TC-TTC-----AAT---TCATAT-TTA-------CAA-ATTTTAT-G-TATTTA-TT-TAATCATATAAC-A-----AT--ACTG-TCTT--AAAAAGGT-----ATA-AA-AATA-TTGTATA--TACAA-A--CAAT--AA-TAATA----TTC--ATT--TATC--ACT---GAA-G-AATAC-AT-GTGG-AAAC--AAA--TGCCAC-TAAA---TTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAATTTTTGTTT--GAATAGA-----A----AAA-AAGTA-CT---T-GAG----TTGTCCTT----A-GAAACC-AATTTTTAAAC--AG-T------CAA--C-TTCCAT-GC-ACCCACTTGGA----AGAGATGTG-TACTT-C--CT------GGT-A--AT--GATTTCCC-G--AAT-GAT-GGC-ACC----ATGA---AT-C-C-----ATG--NT----TTATAACAATTCCCGT----G--GTT-A-CAAA-AT-GG-ATG-T-AT-CT-ACAA----A--GCAG--AACCGATAAG-GA-A--CAAATTAT--TGA-TCTAGTA-GCGC--AAAGAAATATA------AAAATCAACGAAATGA-TCT-TTNTCGTTTTTTTAG-CACGAACGCCGCGCCG---------TATATTCT--CT-------------AA------------CAT---------T-------T------------TTA--CCTCGG-GA----TT-CGTTTT-GATGAATAAA---TTC----------ATTGTT-TA--CGTTGGT--GATTTTTT-A----AAAA-CTCTGAT-ACTA-TTGAATTAC---TACCNT---TTGTATTCAAAAA--TG--ATGA-TTAAAA-A----AT-AA-TGC-A--TTGGACAT-CAGGGACT--ATAGAA-TCTA---TTAACCG---ANAGGCTTTC-CT-CGC----G----C---A--GGAT-CAGA--TC---TTG------GGTAT----C-G-ATAT-TT-AGTTT-G--TAGA-TT----TTTTTAAAAA--TAAAAC-TAC-TT---AAT-GG--C-ACC---------ACAA-ATTCAC--T-C-AGA-AC-TA--TATCAACA-GCCTT-GGG-TTCAGCCACTACGTNTGC
Reference ( family-2905 ) : TTAAGGATGTTCTCTGGT-GGTATG-AN-T----------TTTTT-CATTG-AAT--T--AAACTT--TTT-----GA-AT-AACCCAT-CTT--A-AACTCATT-CAT-CT-TGACCA--GAAAGGCAAATTCAAAC-A-CAA-------GA-A---AA---GG-------------TAT--GT-TAGTG-C-GG--AC---T--TTAAA-GAGTT-ACAGCCCCT-CAAAG-TTA----CCCCTTTGCT--GAA-AG-TTA---C---TTTTTT---C-TTTTGAAA---ATCA-CCAT--T-TTCCAC-AAGAAAA-CACAATA-----T-AAAACAAATA-------TTCAT-GACAN----------AAT--AAT-TTCA-TTATCTTTTATTT----CA-TGAA-AA-TTAAT-CA--T-AA--TTTATAA-TT------TTT--AT--AACT--TTTAC---A-TAATT---TTTTTT-CAAA---AATT-CTANAA-------TA--ATAAC--AGATT-ATCT-AG-CAT-TATTG--GGG----------AA---AANA-TG--ACACAAATTTTAA-GT---C----AAATTTT--GTC--------AA-AAAA-TTCA---AT-CTA----GC---A-GAGTTCC-TGAATT-AAACT---TTTT-GTG--A---AA----TTGCCAA---C-GCAGA-TT-------TGAA--A-CA--------TA--TT--TTT---GCTCATTTT---------------GAATGAAAAAA--------A--GTT-GG-GG----G-------TAG---TGTGCA-TTGGGAACAAA-GTTT---TG----AACC-A-TTTTGTG--T-CC--CACCC-CCTTCTC----ATTT-TTG-TCAT-AAATT----TCAACATC-AATT-AC-AAT-AT-ATGA--T-TTGT-TAT----AAA-----T-ATATTT-TC-TTC-----AAT---TCATAT-TTA-------CAA-ATTTTAT-G-TATTTA-TT-TAATCATATAA--A-----AT--ACTG-TC-T--AAAAAGGT-----ATA-AA-AATA-TTG-ATA--TACAA-A--CAA---AA-TAAT-----TTC--ATT--TATC--ACT---GAA-G-AATAC-ATGGTGG-AAAC--AAA--TGCCAC-TAAA---TTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAATTTTTGTTT--GAATAGA-----A----AAA-AAGTA-CT---T-GAG----TTGTCCTT----A-GAAACC-AATTTTTAAAC--AG-T------CAA--C-TTCCAT-GC-ACCCACTTGGA----AGAGATGTG-TACTT-C--CT------GGT-A--AT--GATTTCCC-G--AAT-GAT-GAC-ACC----ATGA---AT-C-C-----ATG--NT----TTATAACAATTCCCGT----G--GTT-A-CAAA-AT-GG-ATG-T-AT-CT-ACAA----A--GCAG--AACCGATAAG-GA-A--CAAATTAT--TGA-TCTAGTA-GCGC--AAAGAAATATA------AAAATCAACGAAATGA-TCT-TTNTCGTTTTTTTAG-CACGAACGCCGCGCCG---------TATATTCT--CT-------------AA------------CAT---------T-------T------------TTA--CCTCGG-GA----TT-CGTTTT-GATGAATAAA---TTC----------ATTGTT-TA--CGTTGGT--GATTTTTT-A----AAAA-CTCTGAT-ACTA-TTGAATTAC---TACCNT---TTGTATTCAAAAA--TG--ATGA-TTAAAA-A----AT-AA-TGC-A--TTGGACAT-CAGGGACT--ATAGAA-TCTA---TTAACCG---ANAGGCTTTC-CT-CGC----G----C---A--GGAT-CAGA--TC---TTG------GGTAT----C-G-ATAT-TT-AGTTT-G--TAGA-TT----TTTTTAAAAA--TAAAAC-TAC-TT---AAT-GG--C-ACC---------ACAA-ATTCAC--T-C-AGA-AC-TA--TATCAACA-GCCTT-GGG-TTCAGCCACTACGTNTGC
gi|1 : TTAAGG-TGTT-TCTGTT-GGTGAG-AT-TGGACCTCCTCTCTTT-CATTGGAAT--TTAAAACTT--TTTTTTTAAACAT-AACCCATTCTT--G-AACTCATTTCAT-CT-TGACCAAAGAAAGGTTAATTCCAAA-A-CAACTGAAAGGA-A---AAAGGGG-------------TAT--GT-T-GTGACAGG--AC---T--TTAAA-GAGTT-ACAGCCCAT-CAAGT-TTGATATCCCTTTTGCTCTGAA-AG-TTAAAAC---TTTTTTTGTC-GTTTGAAAGGGATCA-CCAT--T-TTCCACCAAGTAAA-CACAATAGAAATT-AAAACAAATA-------TTCATTGACAGCCTTTTAGAGAATTAAAT-CTCA-TTATCTTTTATTT----CAATGAA-AAATTAATTCGATT-AA--TTTATAA-TT------TTTT-AT--AACT--TTTAC---A-TAATT---TTTTTTTCAAATTTATTT-CTAGAAA------TAGAATAACG-AGATT-ATCTCAG-CATATATTA--GGAGCTTGGACGAAA---AAAA-TG--AC-CAAATTTTTATGT---C----AAATTTTTGATC--------AAGAAAA-TTCA---ATATTATTAGGCGGAA-GAGTCCT-TGAATTAAAACTTGGTTTC-GTG--G---AA----ATGCCAA---TGGCAGA-TT-------CGAA--A-CAACTTAGGTTA--CTACTTTGTGGCTCATTTTTGATTTAGAGGGTGAAAAGGAAAAAA--------A--GTTCGGTGG----GGTCATATTAGTT-TGTGCATTTGGGAACAAA-GTTTTTATGGGATAACCTATTTTTGTG--T-CCCGCACCCGCCTTCTC----ATTTCTTGATCAT-AAATT----TCAACATCGGATT-ACAAAT-AT-ATGACTT-TTG--TATTA--AAA-----TGGTATTC-TT-TCCTGGTGAAT---TTCTAA-TTATTTCAGGCAA-ATTTTATGG-TATTTATTT-TAATCATATAACTACTTACAT--GTTC-TCTT--AAAAAGG------ATA-AA-TA-A-TTGTGTA--AACAATACTCAATTCAA-TGATATAAATTC--ATT--TATC--ACTTTCG-A-G-AATAC-AT-GTTG-AAACTAAAA--TGCCACTTAAAGTTTTAA
gi|1 : CCAAATTTTTGTAT--GA-TAGA-----ATATCAAA-CGGTA-TTATTTAGAG----TTGCGCTTTATTA-GACACC-AATTTTTAAACTCAG-T------CAAACC-TTCCAT-GC-ACCACCTTAGAGTGAAGAGATGTGATACTTTC--CT------GGT-ATGATTAGATTTCCG-GT-AAT-GAT-G-C-ACCGGGGATGA---AT-C-CGGGTAATG--TTATTATCATAACAATTCCCGTTCGTG--GTTGA-CAAA-ATTGG-ATGAT-GTTCT-ACAA----AAAGCAG--ACCGGATAAA-GACA--CAAATTATGTCGA-TCTGGTA-GCGTCAAAAGAAATATA------AAAATCAACAAAATGAATCT-TTTTTGTTTTTTTAGACACGA-CACCGCGCCA---------TATTTTCTTTCT-------------AAAGAATGCCGATACAT---------TAAACTATT------------TTAGCCTTCTG-GA----TT-CGTTTTTGCT--ATGAA---CTCCATAATGGCAATTATT-TA--CGTTGGT--GATTTTTTTA----AAAA-CTCTGATTACTAGTT--ATTAC-----CCTT---TTGTATTCAAAAA--TGTTATGA-TTAAGA-A----AT-AA-TGC-ACATTGGACATTCAGGGACT--ATAGAA-TCTA---ATTACCG------GGTCTTCGCTGCGC----GGCTAC---A--GGAT-CAGA--T-----TG------GGTAT----C-GCATAT-TT-AGTTTTG--TAGT-TTAGATTTTTTAAAAA--TAAAAC-TAC-TT---AATAGA--CAACT---------ACAATATTCA-----C-AGA-ACTTAT-TATCAACA-GCCTT---G-TTCAGACACTATGcttattgtccaactcttccatgccactgtgacattgacctttgatcttttactgatctctcaaaaatatcacaacaagcgatgttcccttctttagtgtcaatatcccttatgtccaaatttttgtatgatagaatatcaaacggtattatttagagttgcgctttattagacaccaatttttaaactcagtcaaaccttccatgcaccaccttagagtgaagagatgtgatactttcctggtatgattagatttccggtaatgatgcaccggggatgaatccgggtaatgttattatcataacaattcccgttcgtggttgacaaaattggatgatgttctacaaaaagcagaccggataaagacacaaattatgtcgatctggtagcgtcaaaagaaatataaaaatcaacaaaatgaatcttttttgtttttttagacacgacaccgcgccatattttctttctaaagaatgccgatacattaaactattttagccttctggattcgtttttgctatgaactccataatggcaattatttacgttggtgatttttttaaaaactctgattactagttattacccttttgtattcaaaaatgttatgattaagaaataatgcacattggacattcagggactatagaatctaattaccgggtcttcgctgcgcggctacaggatcagattgggtatcgcatatttagttttgtagtttagattttttaaaaataaaactacttaatagacaactacaatattcacagaacttattatcaacagccttgttcagacactatg
gi|10 : ttaaggtgtttctgttggtgagattggacctcctctctttcattggaatttaaaactttttttttaaacataacccattcttgaactcatttcatcttgaccaaagaaaggttaattccaaaacaactgaaaggaaaaaggggtatgttgtgacaggactttaaagagttacagcccatcaagtttgatatcccttttgctctgaaagttaaaactttttttgtcgtttgaaagggatcaccattttccaccaagtaaacacaatagaaattaaaacaaatattcattgacagccttttagagaattaaatctcattatcttttatttcaatgaaaaattaattcgattaatttataattttttataacttttacataatttttttttcaaatttatttctagaaatagaataacgagattatctcagcatatattaggagcttggacgaaaaaaatgaccaaatttttatgtcaaatttttgatcaagaaaattcaatattattaggcggaagagtccttgaattaaaacttggtttcgtggaaatgccaatggcagattcgaaacaacttaggttactactttgtggctcatttttgatttagagggtgaaaaggaaaaaaagttcggtggggtcatattagtttgtgcatttgggaacaaagtttttatgggataacctatttttgtgtcccgcacccgccttctcatttcttgatcataaatttcaacatcggattacaaatatatgacttttgtattaaaatggtattctttcctggtgaatttctaattatttcaggcaaattttatggtatttattttaatcatataactacttacatgttctcttaaaaaggataaataattgtgtaaacaatactcaattcaatgatataaattcatttatcactttcgagaatacatgttgaaactaaaatgccacttaaagttttaacttattgtccaactcttccatgccactgtgacattgacctttgatcttttactgatctctcaaaaatatcacaacaagcgatgttcccttctttagtgtcaatatcccttatgtCTCATTTT---------------TAATGAAAAAA--------AATGTC-AG-GG----G-------TAG---TGTGCG-TTGG-AACAAA-GTTT---TG----AACC-A-TTTTGAG--TGCC--CATCC-CCTTTTC----A-TT-TTG-TCAT-AAATT----TCAAC-TC-AATA-AC-AAT-AT-TCAA--T-TTGT-TATA---AAA-----T-GCATAT-TC-TTC-----AAT---TCATAT-TTA-------CAA-ATCATAT-G-TATTTA-TT-CCATCGTATAA--G-----A
gi|11 : tcTTAAGGATGTTCTCTGGT-GGTATT-AT-T----------TTTTT-AAAGT-AAT--A--AAAAAT--AAT------A-AT-AACCCAT-TTT--A-A-CTTATT-CAT-CT-TGATCA--GAAAGACAA-TTTAAAC-A-CAC-------GA-A---TA---AG-------------TAT--AT-CAGTG-T-GGT-ACATGTAGTCAAA-GTGTT-ACAGCTCCT-GAAAG-TTA----GCCCTTTGCT--GAA-AG-TTA---TATATATTTT---C-TTTc
gi|12 : gTTTTAA-C--AG-C------CAA--C-TTTCAT-GC-GACCATAATGA----AGATATATC-CACTT-C--CT------GGT-AT-AT---ATT--CT-GT-TAT-GAT-GAC-ACT----ATGACTCAT-CGC-----ATT--TT----TTGT--------CTGT----G--ATT-A-CAAA-TT-AA-ATG-T-AG-GT-ACAAAACGA--GCAG--AAACG
gi|13 : agTTAAGGATGTTCTCTGCT-TTTATGAAG-T----------TTTTT-CA--A-AATAAT--AAACTT--TTT-----AA-AT-AACCCA---TT--ATAACTCATT-CAT-CT-TCACCA--GGAAGGC-AATTTAAAC-A-CAA-------GAGA---AG---GG-------------TGC--AT-TGGTG-T-CG--AC---T--TC-CA-GAGTT-ACAGGCCCT-ggaaacag
gi|14 : TTGAAA---ATCA-CCAT--T-TTCCAC-AAGAAA--CACAATG-----T-AAACCAAATA-------ATC---------------------------TCCA-TTATCTTTTCGTC----CA-TGAA-AA-TCAGT-CA--T-AA--TTTATAA-TT------TTG--AT--AACA--TTTACCCAA-AAA-------TGTT-CAAC---AATT-CTTTAA-------TA--ATA
gi|15 : c---AATT-CTAGAAATACACGTA--ATAAC--TGATT-ATCT-AG-CAT-TATTG--GAG----------AA---AAC--TG--GCACAAATGTTAA-GT---C----ATATTTT--GTC---------A-AAAT-TTCA---AT-CTA----GC---t
gi|16 : tttgtcAAGGATGTTCTCTGGT-GAGATG-AC-T----------TTTTT-CATTC-GAT--T--AAACTT--TTTAAA--AA-AT-AACCCAT-CTTA-A-AACTCATT-CAT-CT-TGACCA--G--AGGC-AATTCAAA
gi|17 : ta-CACGACCGCCGCGCCA---------TAT-TTCT--CT-------------AA-------------AT---------T-------TGATAGATCTATTTTA--CCCCGG-GA----TT-CGTTTT-GATGACTAAA---TTC----------ATTGTT-TA--CGTTGGT--GATTTTTT-
gi|18 : AT-CT-TGATCA--GAAAGACAA-TTTAAAC-A-CAA-------GT-A---AA---GGATACATGTATATATATAAGT-AAGTG-T-GG--AC---T--TTAAAAGAGTT-ACCGCCCCT-CAAAG-
gi|2 : TTAAGGATGTTCTCTGGTTGAGATG-AAAT----------TTTTT-CAT-G-AAT--TTTAAACTT--TTTT----AA-AT-AACCCAT-CTT--A-A-CTCATT-CAT-CTATGACCA--GAAAGGCCAATTCAAAC-A-CAA-------GA-A---AAA--GG-------------TAT--GT-TAGTG-C-GG--AC---T--TTAAA-GAGTT-ACAGCCCCT-CAAAG-TTA-----CCCTTTGCT--GAA-AG--TA---C---TTTTTT---CTTTTTAAAA---ATCA-CCATC-T-TTCCAC-AAG--AA-CACAATA-----T-AAAACAAATA-------TTCAT-GACAG----------AA---AAT-CTCA-TTATC--TTA-TT----CA-TGAA-AA-TTAAT-CA--TGAA--TTTATAATTT------TTT--ATTAAACT--TTTAC---ATTAA-----TTTTTT-CAAA---AATT-CTAAAA-------TA--ATAAC--AGATT-ATCT-AG-CAT-TATTG--GGG----------GAACGAAAA-CGACACACAAATT---A-CT---CGCTAAAATTTT--GTCCACGCAAAAA-AAAA-ATAAAACAT-ATA----GC---A-GAGTTCCTTGAATT-AAACT---TTTT-TTG--ATCGAACACTTTGCCAAAGCC-ACAGA-TTACCATCATAAA--A-CA--------TATCTT--CTT---GCTCATTTT---------------GAATGAAAAAAAAAAACACA--GTT-GA-GGCCAAG-------CAGGTATGTGCA-TT-GGAACAAA-GATT---TG----AACC-A--TTTGTGA-T-CC--CACCC-CCCTCTCTCCAATCT-TTG-TCATAAAATTTATATCAACATC-AATTAAC-AATAAT-ATGA--TGCTGTCCATACTAAAA-----TGATATTTCTCACTC-----AATCA-TCATATAATA-------CAA-ATTTAA----TATTTA-TTATAATCATATAAC-C-----AT--ACTGATC-----AAAAGGTAAAAAATA-AA-AATA-TTGAATACTTACAA-A--C-A---AA-TAATAA---TTCAAATTAATATC--ACT---GAAGG-AATACAATAGTGG-AAAC--AAATTTG-CAC-AAAC---TTAA
gi|2 : CCAAATTTTTGTTTCCGAATAGATAACAA----AAA-AAGTACCT---T-GAG-----TGTCCTT----C-GAACAC-AATCCTTTAAC--AG-TAATAACCAA--CATTCCATCGCAAAACAC--GGA----AGAGA-----TACTT-CAACTGACCAAGGT-A--AT--GATTTCAC-GGAAAT-GATCGGCAACCA---ATGA---AT-C-C-----ATGATCT----TTATAACCATTCCTGT----GCCGTT-A-CAAACAT-GGAATG-TGAT-CCAACAA----G--ACAGAAAACCGATAAGAGA-AACCAAATTAT--TGA-TCTAGTAGGCGC--AAAGAAATATACATGTTAAAATCAACGAAATGA-TCTGTTGTCATTT-----G-CACGAACGCC-CACCGCCCAACCAATATATTCT--CTAAACCTGACGACCAA------------TATCAAACTCTAT-------T------------TTA--CCTCGGCGAAACCTTACG-TTT-GATGAATAAAACTTTC----------ATGATTATACCCGCTTGTAGGAACTTTT-ATACCAAAACCTCTGAT-ATTA---GAATTACACATACCATATATTG-ATTCAAAAACCTG--ATGA-TTACAA-ATACCATAAA-TGCAA--TTGAACAT-CAAGGACTCAATAGAA-AACA---TCAACTA---CCGGGCTTCC-TG-CGCTCAGG----C---AATGGATACAGAATCC---TTGAGAAGAGGTATCAGAC-A-ATAT-TTCAGTTT-G--TAGA-------TCTTTAGAAATCTAAAACTTACGTTCCAAAT-AGAAC-ACCAATCCTACAACAA-ATTCACAAT-CAAGA-AC-TACCCATCAACA-G-CTT-GGGTTTCAGCCcattgtcccaatttcatgcccctgtgacattgacctttgaactttctgacatcccataaatattaacaagtgacaatgtcccttctctagtgcgtatcgatatgtctccaaatttttgtttccgaatagataacaaaaaaagtaccttgagtgtccttcgaacacaatcctttaacagtaataaccaacattccatcgcaaaacacggaagagatacttcaactgaccaaggtaatgatttcacggaaatgatcggcaaccaatgaatccatgatctttataaccattcctgtgccgttacaaacatggaatgtgatccaacaagacagaaaaccgataagagaaaccaaattattgatctagtaggcgcaaagaaatatacatgttaaaatcaacgaaatgatctgttgtcatttgcacgaacgcccaccgcccaaccaatatattctctaaacctgacgaccaatatcaaactctattttacctcggcgaaaccttacgtttgatgaataaaactttcatgattatacccgcttgtaggaacttttataccaaaacctctgatattagaattacacataccatatattgattcaaaaacctgatgattacaaataccataaatgcaattgaacatcaaggactcaatagaaaacatcaactaccgggcttcctgcgctcaggcaatggatacagaatccttgagaagaggtatcagacaatatttcagtttgtagatctttagaaatctaaaacttacgttccaaatagaacaccaatcctacaacaaattcacaatcaagaactacccatcaacagcttgggtttcagcctaaccggccataa
gi|20 : ttaaggatgttctctggttgagatgaaattttttcatgaattttaaacttttttaaataacccatcttaactcattcatctatgaccagaaaggccaattcaaacacaagaaaaaggtatgttagtgcggactttaaagagttacagcccctcaaagttaccctttgctgaaagtacttttttctttttaaaaatcaccatctttccacaagaacacaatataaaacaaatattcatgacagaaaatctcattatcttattcatgaaaattaatcatgaatttataattttttattaaacttttacattaattttttcaaaaattctaaaataataacagattatctagcattattgggggaacgaaaacgacacacaaattactcgctaaaattttgtccacgcaaaaaaaaaataaaacatatagcagagttccttgaattaaactttttttgatcgaacactttgccaaagccacagattaccatcataaaacatatcttcttgctcattttgaatgaaaaaaaaaaacacagttgaggccaagcaggtatgtgcattggaacaaagatttgaaccatttgtgatcccacccccctctctccaatctttgtcataaaatttatatcaacatcaattaacaataatatgatgctgtccatactaaaatgatatttctcactcaatcatcatataatacaaatttaatatttattataatcatataaccatactgatcaaaaggtaaaaaataaaaatattgaatacttacaaacaaataataattcaaattaatatcactgaaggaatacaatagtggaaacaaatttgcacaaacttaacattgtcccaatttcatgcccctgtgacattgacctttgaactttctgacatcccataaatattaacaagtgacaatgtcccttctctagtgcgtatcgatatgtctTTCAC--T-C-AGA-AC-TA--TATCAACA-GCCTTGGGG-TTCAGCCATTA-GTATGCtaaccggccataa
gi|3 : TTAAGGATGTTCTCTGGT---------T-T----------TTTTT-C-TTG-AAT--T--AAACTT--TTT-----GA-AT-AACCCAT-TTT--A-AACTCATT-CAT-CT-TGACCA--GAACGGCAAATTCAAAC-A-CAA-------GA-A---AA---AG-------------TAT--GT-TAGTG-C-GG--AC---C--TTAAA-GAGTT-ACAGCCCCT-GAAAG-TTA----CCCCTTTGCT--GAA-AG-TTA---C---TTTTTT---C-TTTTAAAA---CTTA-CCAT--T-TTCCAC-AAGAAAA-CACAATA-----T-AAAACAAATA-------TTCAT-GACAT----------AAT--AAT-TTCA-TTATCTTTTATTT----CA-TGAA-AA-TTAAT-CA--T-AA--TTTATAA-TT------TT---AT--AACT--TTT-C---A-TAATT---TTTTTT-CAAA---AATT-CTAGA--------TA--ATAAC--AGATT-ATAT-AG-CAT-TAT-G--GGG----------AA---AATA-TG--ACCCAAATTTTAA-GT---C----AAATTT---GTC--------AA-AAAA-TCCA---AT-CTA----GC---AAGAGTTTC-TGAATT-AAACT---TTT--GTG--A---AA----TTGCTAC---T-GTAGA-TT-------TGAA--ATCA--------TA--TT--TTT---GCTCATTT----------------GAATGAAAAAA--------A--GTT-GG-GG----G-------TAG---TGTGCA-TTGGGAACAAA-GTTT---TG----AACCCA-TTTT-TG--T-CC--CACCC-CCTTC-C----ATCT-TTG-TCAT-AAATT----TCA-CATC-AATT-AC-AAT-ATGATGA--T-TTGT-TAT----AAA-----T--TATTT-CC-TTC-----AAT---TCATAT-TTA-------CAA-ATTTTAT-G-TATTTA-TC-TAATTATATAACCA-----ATCAACTG-TC-T--AAAAAGGT-----ATA-AATAAT--TTG--TA--TATGA-A--CAA---AATTAAT-----TCC--ATT--TATC--ACT---GAA-A-ATTAC-GTGGTGGAAAAC--AAG--TG--AC-TAAA---TTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAATTTTGTTTT--GAATAGA-----A----AAACAAGTA-CT---T-GAG----TTATCCTT----A-AAAACC-AATTTTT-AAC--AGTT------CAA--C-TTCCAT-GC-ACCCA-TTGGA----AGAG-TGTG-TACTT-C--CT------GGT----AT--GGTTT-TC-G--AAA-GAT-G-C-ACC----ATG----AT-C-C-----ATG--AT----TAAT-AC-ATTCCC-T----G--GTT-A-CAAA-AT-GG-ATG-T-AT-CT-ACAA----A--GCAC--AACCGATAAG-GA-A--CAAATT-T--TGA-TCTAGTA-GCGC--AAAGAAATATA------AAAATCAACAAAGTGA-TCC-TTATCG---TTTTAG-CATGAACGCCGCGCCG---------CATATTCT--CT-------------AA------------CAT---------T-------T------------TTA--CCTCGG-GA----TT-CATTTT-GATGAATAAA---TTC----------ATTGTT-TA--CATTGGT--GATTTTTT-A----AAAA-CTCTGAT-AC---TTGA--------TACCCT---TTTTATTC-AAAA--TG--ATGAGTTAAAA-A----AT-AATTGC-A--CTGGACAT-CAGGGACT------AA-T-TA---TT--CCG---AAAGGCTTTC-CT-CGC----G----C---A--GGAT-CAGA--TCAATTTG------GGGAT----C-G-ATAT-TT-AGTTT-G--TAGATTT----TTTTTAAATA--TAAAA--TACTTT---AAT-GG--C-ACCTT-------ACAA-ATTCAC--T-C-AGT-AC-TA--TATCAACAGGCCTT-GGG-TTCAGCCACTACGTTTGC
gi|4 : TTAAGGATGTTCTTTGGT-GAGATG-AAAT----------TTTTT-CATTG-AAT--T--AAACTTCCTTT-----GA-ATTAACCCAT-CTCTGG-AACTCATT-CATTCT-TGACCA--GAAAGGCAATTCCAAACCATCAA-------GA-ATAAGA---GG-------------TAT--GTGTAGTG-C-GGGGAC---TG-TTAAAAGAGTTGACAGTCCCTTCAAGGGTTA----CCC-TTTGCCTGGAATAGCTTA---C---TTTTT----C-TTTGGATAT--ATCAGCCATATTATTCCAC-AAGAAAATCA-AATA-----TCAAAACAAATACCACCCATTCAT-GACAGT---------AAT--AATCTTCAATTATCTAGTATCTTCCTCACTGAATAA-TTAAT-C---T-AACTTTTATAA-TTATGATATTT--AT--AGCTGCTTTAC---A-TTATTGACTTTTTC-CAAA---AAATACGACAA-------TA--ATAACTCAGATTTATCT-AGGCAT-TATTGTGGGG----------AA---AACAATG--ACACAAATTTTAA-GTTGTC----AAATTTT--GGC--------AA-AAAAGTTCA---AT-CTA----GC---A-GAGTTCCGTGA-TT-AAACT---TTTTTGTGGAA---AA----TTGATAAT--C-GCAGAATT-------TGAATGA--A--------T---TT--TTT---GCTCATT-----------------GAATGAAAAAA-----------GTT-AG-GG----A-------TAG---CGTGCA-TTGG-AACAAAAGGTT---TG----AACC-ATTTTTGTGTCT-CC--CACCC-CTTTCTC----ATTT-TT--TCAT-AAATT----TCAAC-TC-AAAT-AC-AAT-AT-ATGA--T-TTGTATAT----AAA-----T-ATATTT-TC-TTC-----AATTTATCATAT-TTA-------CAATTTTTTAT-GATATTTA-TT-TAATCATAT-A--A-----AT--ACTG-TCTT--AAAAAGGT-----CTATCA-AATATTTGTATA--TACAA-A--CAAT--AA-TAA------TTA--ATT--TATTAAACT---GAA-GAAATAC-A--GTGA-AA
gi|5 : AAGGATGTTCTCTGGT-GGTGTG-AA-T----------TTTTTTCAAAG-AAA--T--AAACTC--TTT-----GA-AT-AACGCAT-TTT--A-A-CTCATT-CAT-CT-TGACCA--GAAAGGCAA-TTTAAAA-A-CAA--------A-A---AA---GG-------------TAT--GT-CAGTA-T-GA--AC---T--TTAAA-GAGAT-ACAGCTCCT-CAAAG-TTT----CCCCTTTGCT--GAA-AG-TTA---C---TTTTTT---T-TTTCGAAA---ATCA-CCAT--T-TTCTAC-AA-AAAA-CACAATA-----T-AAAACAAATA-------TT-AT-GACAA----------AAT--AATATTCA-TTATCATCTATTT----CA-TGAA-AA-TTAAT-CA--T-AA--CGTATAA-TT------TTTACAT--AAAT--TTT
gi|6 : cCCAA--TTTTGTTT--GAATAGA-----A----TAA-AAGTA--T---T-GAGGGGGCTGTCCTT----AAGAAACCCAATTTTGAAAC--AG-T------CAA--C-TTCTAT-GC-ACCCACTTGGA----AGAGATGTG-CACTT-C--CT------GGTAA--AT--GATTTTCCGG--AATGGAT-GGC-ACC----ATGA---ATCC-C-----ATG--CT----TCTTAGAATTTTCTGT----G--GTT-ACCAAA-AT-GG-ATG-T-AT-CT-ACAAC---A--GC-G--AACCGATAAC-AA-A---AAATTAA--TGAGTCTAGTA-GCGC--AAAGAAgtcaaga
gi|7 : tattctattttaatctTC-AATT-AC-AAT-AT---GA--T-TTGT-TAT----AAAATGCAT-ATATAT-TC-TTC-----AAT---TCATAT-TTA-------AAA-ATTTTAT-G-TATTTA-TT-TTATCACA-AA--A-----AT--ACTG-TC-TAAAAAAAAGT-----AT--AA-AATA-TTG--TA--CACAA-A--C-----AA-T-AT-----TTC--ATT--TATC--ACT---GAA-G-AATAC-AT-GTGG-AAAC--ATA--TGCCAC-TAAA---TTAA
gi|8 : GTA-CT---T-GAG----TTATCATT----A-GAAACC-AATTTT--AAC--AG-T------CAA--C-TTCCAT-GC-ACCCACTTGGA----AGATATGTG-TACTT-C--CT------GGT-A---T--GATTTCCC-G--AAT-GAT-GAC-ACC----ATGA---AT-C-C-----ATA--AT----TTATAACATTCCCTGT----G--GTT-A-CAAA-AT-GG-ATG-T-AT-CT-ACAA----A--GCAG--AACCGATAAG-AA-A--CAAATCAT--TGA-TCTAGTA-GCGC--AAAGAAACAT-------AAAATCAACcattgtccaattccatgcactgtgacattgacctttgaccttctgactccaaaattcactggtattaagccaatgcc
gi|9 : tcttatgtccaaatttggtttAAA--TG--ATGA-TTAAAAAA----AT-AA-TGC-A--TTGGACAT-CAGGGACT--ATAGAATTCTAAATTTAGCCGAGAAGAAGCTTTC-CT--GC----G----CTGGA--TGAT-CAGA--T----TGG------GGTAT----CAG-ATATGTT-AGTTT-GGTTAGA--T----TTTTTAAAAA--TAAAA--TAC-TT---AA--------A-----------ACAA-AATCAC--TCC-AGACAC-TA--TATCAACA-TCTTT-GGG-TTCAGC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TAATGACCTTTTAAACCTAGGAATGACATTTACAGTGCTTATATACACAGGCACTTGACGTTTTAAATATATTT