lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  111111111111111111111111111111111111111111111111111111111111111                 
lowQualScore                  :         5555555555555555555555555555555555       1                        22222222222222              1111111         111111       1111111111                   111111     111111111        111111    2222222222      222         1                     11      11                 11        1  11111         222222           111111     11                 1111     2222                  1111111                      1                                               1     333  11                 11                     111111    22             111   333333333    11            111       111                           3333                111111111                    222222  11         333             22222222       3                              1111                 111111                              11111                   2222222222                 111   33333333333333  11111        1     1111           555555555555555555555                        5555555555555    111               1111111            22222222              11111        111          1111            1    11            2222222222       2222222222222       111111111111111        1      2222222                            222222222222222   111  11    11                          111111                1111         111111111        1      1111111              111  11      11          2222222222     55555555555555555555555555    1  1            777777777777777777777777777777777777777777777777777777777777777              1  
lowQualScore                  :         1111111111111111111111111111111111       1     5        5    5    55555555555555            5 6666666  99     111111    3  9999999999        77 3     6 888888     333333333  0     444444    3333333333  5   111      5  0    2    99    5     00  77  22       777       22   5    2  55555  888    000000 0    5    444444  6  33       5  5  5   0000     7777       2      5   6666666  66 66     5  5   0  3    888   5 8       2       66  777    7777 0  2  5  555  11 77 555       5  11 5     5  66       4 444444  5 11 5 66  5 5   000   555555555 5  77     0      000   5   000   3    5           5  5   2222 77   77   5    888888888     77   5       5 777777  33    5  1 555 88   9      88888888 0  5  4   66      5       888     5  6666   4        66   444444      5 5   4   5   1   8     22222  5      66 0      3333333333           888   444   33333333333333  33333    2   7 5   3333   5 5     999999999999999999999 4 5       888  5  2 5  4444444444444    999 5  777        6666666     66     00000000           2  77777     2  222  9999    4444  66   5  5 2    33  22      5 5555555555       0000000000000   66  777777777777777    5   0      5555555      5      77 77   8      888888888888888   000  33    44 6  6  3  6 9  6 6     6  777777   6  2 6   99  4444    6    999999999   99   1      7777777    99 3    8 444  11   0  11  8    66 2222222222     77777777777777777777777777    5  2            444444444444444444444444444444444444444444444444444444444444444  6   6       5  
lowQualScore                  :         ..................................       .     .        .    .    ..............            . .......  ..     ......    .  ..........        .. .     . ......     .........  .     ......    ..........  .   ...      .  .    .    ..    .     ..  ..  ..       ...       ..   .    .  .....  ...    ...... .    .    ......  .  ..       .  .  .   ....     ....       .      .   .......  .. ..     .  .   .  .    ...   . .       .       ..  ...    .... .  .  .  ...  .. .. ...       .  .. .     .  ..       . ......  . .. . ..  . .   ...   ......... .  ..     .      ...   .   ...   .    .           .  .   .... ..   ..   .    .........     ..   .       . ......  ..    .  . ... ..   .      ........ .  .  .   ..      .       ...     .  ....   .        ..   ......      . .   .   .   .   .     .....  .      .. .      ..........           ...   ...   ..............  .....    .   . .   ....   . .     ..................... . .       ...  .  . .  .............    ... .  ...        .......     ..     ........           .  .....     .  ...  ....    ....  ..   .  . .    ..  ..      . ..........       .............   ..  ...............    .   .      .......      .      .. ..   .      ...............   ...  ..    .. .  .  .  . .  . .     .  ......   .  . .   ..  ....    .    .........   ..   .      .......    .. .    . ...  ..   .  ..  .    .. ..........     ..........................    .  .            ...............................................................  .   .       .  
lowQualScore                  :         6666666666666666666666666666666666       6     7        0    0    22222222222222            0 6666666  77     666666    1  8888888888        99 6     7 000000     666666666  1     444444    6666666666  0   000      0  0    0    00    0     00  99  00       000       55   0    1  55555  888    555555 1    0    444444  5  22       0  0  0   6666     9999       0      0   2222222  99 11     0  0   4  8    888   0 2       5       99  111    8888 2  1  0  666  99 99 999       0  22 0     0  99       0 444444  0 99 0 99  0 0   000   999999999 0  99     1      000   7   000   7    7           7  7   1111 99   99   7    999999999     99   7       7 333333  66    7  7 999 33   6      66666666 4  7  3   99      0       888     0  0000   0        99   444444      0 0   1   0   4   8     99999  0      99 4      2222222222           888   333   99999999999999  77777    3   1 7   0000   7 7     333333333333333333333 6 7       999  7  4 7  9999999999999    333 7  999        2222222     99     66666666           6  55555     2  666  0000    2222  99   0  0 2    88  88      0 4444444444       1111111111111   44  444444444444444    0   0      0000000      7      44 99   4      999999999999999   000  88    55 7  7  3  7 3  7 7     7  555555   7  5 7   22  2222    3    333333333   22   0      0000000    22 3    0 000  00   8  00  0    66 2222222222     77777777777777777777777777    0  0            555555555555555555555555555555555555555555555555555555555555555  0   0       0  
consensus                     :  ACAGCTAACACTGTAACA--CT--GC-----C---------ATACCCAGTGTCT-GTGGTGGC-GGTG-AGTCGCG----G-----NTCATCAAGCAGT-G------GTTT-GACTGG---AGGAGATGA-------TACAGCTTCTG--GTGACTTCA--T---TGCCT---CG----CCATGTTC------TGTG-TTA-A----TG-GATAA-TGATGA-CA-GAGAACCAAA-CATT-TCATTN-AG--CTGATCTTTGTT--TATTTTCCGAGG-AGAAAAA-C---TT---GGCAAT-TTTAACTCG-GACT------TTNGGC-GGTAATG-TT-CT-AAA----CTCGG--AATTCCTAGATTTGTA-AGT-------AG--AGGTTAAG-GA-GACATCATTTG---ATT-TTAGTATTGNTTTCAAG--TCGGNAATG--A-TCTGTTT-GAG--TT--CGGT-TATTTTCTG-TGC-G-ATTTC-TT--CTGTGTTTT------TA-TT-C-A--GG-G-TAG---ATA-GGT--T--GTTT-TGTTTTTCATTTC---CTG-AAT---GTCAGATT-TCCGTCGGTTG-AC-AATG-GGC--GGT--GAC-CTCT---C-----GGTGT--AAG-ATTTCTC-CT-----TG-TTGGT-CGGCGGTCTGTTGTTAGTTT--------CCCG-TACTTC--GTTTCT-AACTCGG---CTTTC-TCA---GTTTGGACATCG--GAC------GCCATT-T-CTTCATA-TCGGGGATAAATTC----TG-GTCTCT--AGTTCTTC--------C-AAATCTTTTTG---TAA-GCTTT-----TGT--TGT-TT-A---GCGCCGAG-T-TTT---CCAG-A-ATATCGG---A---------TANA--TCG-TGACCTTC-GTG-TTNA-CC---GA-NGA-A--CGCA--GG-TA-ATACAGACAG-------GAATG--TCGCAT--T----TCTCGCAGTAANGT-----TCGCAGTGT--TTT---TCGGC---GT--GTT-TC-GGACAT--TTCGGGTAGT-TG---------GGAGTAG---------ACTTTCTC-TGTA-A-GT---AGT--GCAC-GACTTTGTGT----CG-TTTAGA-CGAATC-CG--AGAGGTGTTTTCC-TACG-------CAG---TTAGCGCA-NA-GA-CTNACGTNAC-A-AAGTT-CA---C--AAT-GACTCTGT--AG----GGGGNCGGT---TT----CAC--AGAGGTCACACAG-G--AGGA--CNTCCT-G---AG--CACTGC--GC-CGGGGGT---GC-----ATTTC-----TGT-CG--CCGG-----GGTCACACGAGAAGTTTACTGTCA---AT--A-------------AGAAAT----NTTAA--C------A-GATAAAAA-AA---CCAAACTAAAATTACAGTA
Reference ( gi|4 )            :  ACAGCTA-CATTGTAACA--CT--GC-----C---------ATACCCATTGTCT-GTGGTGGC-GGTG-AGTCCTG----G-----ATCATCAAGCAAT-G------ATTC-GACTGG---AGGAGACGA-------TATAGCTTCTG--GTGATTTTA--T---TGCCT---CG----CCATGTTC------TGTG-T-A-A----TG-GATAAATGATGA-CA-GAGAGCCAAG-CATT-TCATTC-AG--CTTATCTTTGTT--TATTTTCTTAGG-AGAATAA-T---TT---GGCAAT-TTTAACTCG-GACT------TTCGGT-GGTAATG-TT-CT-GAA----CTCGG--A-TTCCTAGGTTTGTA-AGT-------AG--AGATTAAG-GA-GACATCTTTTG---ATT-TCAGTATTGCTTTCAAG--TCCGAAATG--A-TCTGATT-GA---TT--CGGT-TATTTTCTG-TGC-G-ATTTC-TT--CTGTATTCT------TA-T--C-A--GG-G-TAG---ATA-GGT--T--GTTT-TGTTTTTCATTTC---CTG-AAT---GTCGGATT-TCCGTCGGTTG-AC-AAT--G-C--GGT--GAC-CTCT---C-----GGTGT--AAG-ATTTCTC-CA-----TG-GTGGT-CGACAATCTTTTGATAATTT--------CCCG-TA-TTC--GTTTCT-AACTCGG---CTTTC-TCT---GTTCGGATATTG--GAC------GCCATT-T-CTTTATA-TCGGGGGGAAATTT----TG-GTCTCT--AATTCCTT--------C-AAATCTTTTTG---TAA-ACTTT-----TGT--TGT-TT-A---GCGCTGAG-T-TTT---CCAG-A-ATATCCG---A---------TAAC--TTG-TGACCTTC-ATG-TTTA-CC---GA-TGA-A--CGCA--CG-TA-ATACAGACAG-------GAATG--TCACAA--T----TCTCGCAGTAAAGT-----TCGCAGTGT--TTT---TCGGT---GT--GTT-TC-GTACAT--TTCGGGTAGT-TG---------GGAGTAG---------ACTCTCTC-TGTA-A-AT---AGT--GCAC-GACATTGTGT----CG-TTTAGA-CGAATC-CG--AGATGTGTTTCAC-TGCG-------CAG---TTAACACA-GA-GA-TTTATATGAC-A-AAGTT-CA---C--AAT-GACTCTGT--AG----GGGGGCAGT---TT----CAC--AGATGTCACAAAG-G--AGGA--CTTCCT-G---AG--CACTGC--GC-CGGGAAT---GC-----ATTTC-----TGT-TG--CCGG-----GATGACACCAGCAGTTTACTGTCA---AT--A-------------AGATAT----TTTGA--C------A-GATAAAAACAATGTCCAAGCTAGAATTACATTAT
gi|8                          :  ACAGCTA-CAT-GTAACA--CT--GC-----C---------ATACCCATTGTCT-GTGGTGGC-GGTG-AGTCCTG----G-----ATCATCAAGCAAT-G------ATTC-GACTGG---AGGAGACGA-------TATAGCTTCTG--GTGATTTTA--T---TGCCT---CG----CCATGTTC------TGTGTT-A-A----TG-GAT-AATGATGA-CA-GAGAGCCAAG-CATT-TCATTC-AG--CTGATCTTTGTT--TATTTTCTTAGG-AGAATAA-T---TT---GGCAA--TTTAACTCG-GACT------TTCGGT-GGTAATG-TT-CT-GAA----CTCGGA-A-TTCCTAGGTTTGTA-AGT-------AG--AGATTAAG-GA-GACATCTTTTG---ATT-TCAGTATTGCTTTCAAG--TCCGAAATG--A-TCTGATT-GAG--TT--CGGT-TATTTTCTG-TGC-G-ATTTC-TT--CTGTATTCT------TATT--C-A--GG-G-TAG---ATA-GG---T--G-TT-TGTTTTTCATTTC---CTG-AAT---GTCGGATT-TCCGTCGGTTG-AC-AATG-G-C--GGT--GAC-CTCT---C-----GGTGT--AAG-ATTTCTC-CA-----TG-GTGGT-CGAC-ATCTTTTGATAATTT--------CCCG-TATTTC--GTTTCT-AACTCGG---CTTTC-TCT---GTTCGGATATTG--GAC------GCCATT-T-CTTTATA-TCGGGGGGAAATTT----TG-GTCTCT--AATTCCTT--------C-AAATCTTTTTG---T
gi|1                          :  ACAGCTAACACTGTG------T--GCAAATTC---------ATACCCAGTGTCT-GTGGTGGC-AGTG-AGTCGCG----G-----TTCATCAAGCAGT-G------GTTT-CACAAA---AGGGGACGA-------TACAGCTTCTG--GTAATTTAA--T---TGTCT---TG----CCATGTTC------TTTG-TTG-A----TG-GATAA-TGGTGA-CA-AAGAGCCAAA-TACT-TCTTTA-AG--TTGATACATGT----ATTTGCTTATA-A-----A-C---TC---GGTAAT-GTCA-CTCG-GACT------TTCGAC-GGTAATG-TT-CT-AAA----CACGA--AATTCCTAGATTTGTA-GGC-------AG--AAGTTAAG-GA-TATATCATTTG---ATT-TTAAAATTGATTTCAAG--TCAGAAATG--G-TCTGTTT-AAGT-TT--CG-C-TATTCTCTG-TGT-G-ATTTC-CA--CTTCATTTG------TG-TT-C-A--GG-G-TAG---ATA-GGT-----GTTT--GTTTTTCATTTC---CCC-AAT---TTCAGATT-TCCGTTGGTTG-AC-AAT--GGC--GGT--GAT-CTCT---T-----GGTGT--AAG-ACTTTTC-CT-----TG-TTGGT-CGGCGG-CTGTTGTTAGCTT--------CTCG-TACTTT--GTTTCT-AACTCGT---CTTTC-TCA---GTTTGGATATCG--AAG------GCCATT-T-TTTCATG-TTGGGGATAAATTC----TC-GCCTCC--AGTTCTTC--------A-AAATCTTTTTG---GAA---TTT-----TTT--TGT-TTTA---GCACTGAGGT-TTT---CCAG-A-ATATCGG---A---------TATA--TCG-TGGCCTTT-GTG-TGTA-CCT--GA-CAAGA--CGCA--GG-TA-ATACAAACAG-------GAGTG--TCACAT--T----TCTCACAGTGATAT-----TCGCATTGG--TTT---TCGGC---GT--GTT-TC-GGACAA--TTCGGGTAAA-TA---------GGAGTAT---------AAATTCTC-TGGG-A-AT---AGT--GCAC-AACTTTATGG----TG-TTTAGA-CGAATC-CG--ATATGTGTTTTCC-TACG-------CAG---TTAACACA-AA-TA-TTTATGTTAC-A-AAGTT-CA---C--AAT-AACTATCT--AG----GGGGACAGT---GT----CAC--AGAGATCACACAG-G--AGGAACTTTCCT-GGGAAG--CACTGC--GC-CGGGGAT---GTCTCCGATTTC-----TGTACGCTCCGGCTCCCG-TTACACAAGATGTTCACTGTTATTTAA--A-------------AAAAAT----CTCAAACC------A-AATAGA----------AAACTAAAATTACAGTAnnnnnnnnnnnnnnnnnnnnnnnnngtatgcgtttcacttcacaacggtcatacaa
gi|2                          :  ACAGCTAACACTG-AATAGTCT--GT-----C---------ATACCCAGTGTCT-GTGGTGGC-GGTG-AATCGCG----G-----TTCATCGAGTAAT-G------GTTT-GACTG------GAG--GA-----------------G--ATGAT---A--C---GGCTT---C--------------------------A-A----TT-GATAA-TGACGA-CA-GACAACCAAA-CATT-TTATTG-AG--CTGATCTTTGTT--TATTTTCTGAGG-AGAAAAA-C---TT---GGCA-C-TGTAACTCG-GACT------TTAGGA-GGTAATG-TT-TT-AAA----CTCGG--AATTCCTAGATTTGTA-AGT-------AG--AGGTTAAG-GA-GACATCATTGG---ATT-TTAGTATTGATTTCAAG--TCGGCAATG--C-TCTGTTT-GA---TTT-CTGT-AATTTTCCG-AGT-G-ATTTC-TT--CCATGTTTT------TA-T--CCA--GG-G-TAA---ATA-GGT-----GTTT--GTTTTTCATGTC---CTG-AAT---GGAAGATT-TCCGCTGGTCG-AC-AAT--GGC--AGT--GAT-TTCT---C-----GGTGT--AAG-ATTTCTC-CT-----TG-TTGGT-CGGCGG-CTGTTGTTAATTT--------CGCG-AAATTC--GTTTCT-AGTTCGG---CTTTC-TCT---GTCTGGACATCG--GAC------GCCATT-T-CCTCATA-TCGCGGATAAATCC----TG-TTTTGT--AATTCTTC--------T-AAATCTTTTTG---TAA-ACTCTC----TGT--T---TT-A---GCGCTGAG-T-TCT------G-ATATATC-----------------------G-TGACCTTT-GTG-TTTT-CC---AA-ATA-ATGCGCA--GG-TA-GAACAGACAG-------GAACA--TCACAT--G----TTTCGCAATAAAGT-----TTGCAA-----TCT---TCGGTTGCGT--GTT-GC-GGACAT--TTTGCGTAGT-TA---------GGAGTGG---------ATATTCGG-TGTATA-AA---AG---AAAC-GACATTGTGC----TT-TTTAGA-GAAATC-CG--AGAGGTGTTCCCC-AACA-------CAGGCCTT---GCA-TA-GA-CTGACATTAC-A-AAGTT-CA---C--AAT-GACTCTGT--AG----GGGGGCAGT---CT----CAC--AGAGGTCACACCG-C--AGGA--CGTCCT-G---GG--CACTGC--GC-CGGGGGTGCAGC-----ATTTC-----TGA-TG--TCGG-----GGTCACACGAGAAGTTTACTGTCA---AT--AAAAAGGGAACCTTAGATAT----GTTGA--CATAATGA-GATTAAAATAAattgctatatatggaactccccttttctcagaatcatatatgtaattgatatcaaattgtacattatctatgacacggtgcaatgtcagaatccgtttatataattttgtctcacctaaaatccatgtaatgtgactctttaatcaagccccgtgatgaaataccagttcgtgagcggcacag
gi|15                         : gACAGCTAACACCGTAA-A--GTAAGT-----C---------ATACCAAGTGTGT-ATGGTGGC-GGTG-AATCGCG----G-----CTCATCACGCAGT-G------GTTT-GACTGG---ATGAGATGA-------TACAGCTTCaatggaaattcaacacatcaatataactttaatttcaccaaactctcaaaatgaaatgaaatctgtctcattgattacataaatatcgatattaatgacactacaaagtcaaaacatgcgtatataattttgtcttactagaaaattcaacatggcctccctgttctgtcgaccttcctccagtctggtcctataaataaatacttgtgcggcga
gi|17                         :  ACAGCTAACACTGTA-TA--GTTGGT-----C---------ATACCCAGTGTCT-GTGGTGGC-TGTG-AGTCGCG----G-----GTCATCAAGCAGT-G------GTTT-G
gi|5                          :                AACA--CT--GC-----TTAGTTCGTTATATTCAGTGTCT-GTGATGGC-AGTG-AGTCGCG----G-----GTCATCAAGCAGT-G------GTTT-GACTATTATAGGAGATGA-------TACAGCTTCTG--GCAACTTCA--TAATTGCCT---CG----CCATGTTC------TGTG-TTA-A----TG-GATAG-TGATGA-CA-GAGAACCAAA-CATT-CCATTC-AG--CTGATCTTTGTT--TACTTTCCGAGG-AGAAAAA-C---AT---GGTAAT-GT-AACTTG-GACT------TTTGGA-GGTAAGG-TT-CT-AAT----TTCAG--AATTCCTAGATTTGTA-GGT-------AG--AGGTTAAC-GA-GGCATCATTTG---ATT-TTAGTATTGCTTTCAAG--TCCAAAATA--A-T----TT-GT---TT--CAGT-T-----CAG-TA----ATTTC-TT--CTGTATTTT------TG-TT-C-A--GG-G-TAG---ATA-CATG-TAAGTGTATGTTTTTCATTTC---CTG-AAT---TTCAGATT-TTCTGCTATTG-AC-AAT--GGC--GGT--GAT-CTCT---T-----GGTGT--AAG-ATTTCTC-CT-----TG-TTGGT-CGGCGG-CTGATAATAGTTT--------CTCG-TACTTC--GTGTCT-AACTCGT---TTTTC-TCA---ATTTGGATATCG--GAC------GCCATT-C-TTTCAAA-GTTAGGATAAACTC----TT-GTCTCT--AGTTTTTT--------CCAAATCTTTTTG---TAA-AATTTC----TGT--T---TT-A---GCGCTGAGGC-TTT---CCAG-A-AATTCTG---A---------TATA--TCG-TGACCTTT-GTG-TTGA-CCCGAGG-TGA----CGCA--GG-TA-ATGCAGACAG-------GAACG--TCGCAT--T----TTTCGCAGTGAAGT-----TCACATTGC--TTT---TCGGC---GT--GTT-TC-GGACAT--TTCGGGTAGT-TT---------GGAGTAG---------CCTTTCTC-TGTA-A-AT---AGG--GCAC-GACATTATGT----CG-TTTAGA-TGGATC-CG--AGATGTGTTTTCC-TACG-------CAG---TTAACACA-GA-GG-TTTATGTTAC-A-AAGTT-CA---C--AAT-GACTCTGT--AG----GAGGACAGT---TT----CAC--AGAGGTCACACAG-G--AGGA--CTTCCT-G---AG--CACTGC--GC-CGGGGAT---GC-----ATTTCACATGTGT-TG--
gi|6                          :                     acagagC-----C---------ATAGCCAGTGGCTTATGGTTGCAGGTG-AATCGCGCTTCG-----GTC--CAGACAATTG------GTTG-GACTTG-----GAGAT---------------TTCTGCGATGACTTCACTT---TGCGC---CG----C-ATGTTCGTTCTCTGTG-T-TTA----TGAGATAATCGATGA-AAAGGGAACCAAA-CATTGTCACGG-AGTGCTC-TCTTGG-----ATTTTCGGAGG-ACGACAA-TCACTT---GGTAAT-GT-AA-TCGAGACC------TTTGTA-GGCAATC-TTTCG-GAA----TTCGGTTA-TTCCTAGATTTGTA-ACT-------AA--A---TGAGAGA-GAAATCATTGG---ATTCTTAATATTGCCTTCAAGGTTTC-ATATG--ACTTTGTTTTGAG--TT--CAGTATATCTT--G-TGCTG-GTTTCATT--CTATGTTTT------TA-TTCC-A--AATG-CAGCCGATA-G----T--GTTT-AGATTT-CATCTC---CGC-GAT---GTCAGTTT-GCCGTTGTTTTTAC-AAT--GGC--AGT--GAC-CTCT---C-----GGTGT--AAGTATTTCTTGCT-----TT-GTG-T-CAAGATTCGCTTGTTAATTTTG------CTCA-TACTTT--GCTTGG-AAACCGG---CTTTCCTCA---GTTTTGACATTC--GAT------GTCATT-T-CTTCATA-TCGTGGACGTATTT----TG-A-CTCT--AGTTCCTC--------C-AAATTCTTTTGCACTAA-GGCTG-----TGT--T-T-TT-A---GATCCGAG-TGTTT---TCAG-A-ACATCGGCATA---------CAAA--TTGTTGGCCCTCTATGACTCA-TCGG-GA-GGA-C--CGCA--GG-TAGAAACA-ACA--------GAATGTTTCGCAATTT----TCTCGCAGTAAAGTG----TCACAGTGTG-TTTTTGTCGCC---AT--GTT-CC-GGACATGATGC-GGTAAT-AG---------GG-GT-G---------ACT-TCTT-TG---A-GT---AATGGGCAC-GACCTTGTGT----TATTTTAGA-CGAATCGTG--AGAGGTGTTATGC-GACA-------CAA---TT-GCACATTA-GA-CTAATATGACAA-AAGTT-CG---CTAAAC-ATCT-TGC--AGCCAAGTGTCCGAT---TT----CACTTAGATGACAGTAAGCGATAGAA--CTTCtatactgtttattaagaaagaaagaaaatattaattaatgatatcaacaggttgaaagaaat
gi|3                          :                                   gacgctaacagcgtagtcctcgtTGGTCG--GGTGTAGTCGCG----GGGCATATCATATAGTAAT-ATATGTTATTTAGACTGG---AAGAGGTGAATTTGATTACAGCTTGTG--G-GACTTCA------TGTCTACACGAGAACC-TGTTC------TGTT-T-A-AATCCCA-GAT-AATGATGACCATGGTAACCAAATCATT-Tgct
gi|7                          :                                                                                                  cggcgtaactggaTT-GACTGG---AGGAGATGA-------TACAGCTTCTG--GGAACTTCA--T---TGTCT---CC----TCATGTTC------TGTGTT-A-A----TG-GAT-AATGGTGA-TA-GAGAACCAAA-CATT-TCATTC-AG--CTTATCTTTGTT--TATTTTCCCACG-AGAAAAA-C---TT---GGTAA--TGTAACTCG-GACT------TTAGGC-GGCAATG-TT-CT-AAA----TTCGGA-A-TTCCTAGATTTGTA-CGT-------CG--AGGTTAAG-GA-GATATCATTTG---ATT-TTAGTATTGATTTCAAG--CCGGCAATG--A-TTTGTTT-GAG--TT--CCCT-AATTTTCTG-TGT-G-ATTTC-TT--CTGTGTTTT------TA-TC-C-A--AG-G-TAG---ATA-AG---T--G-TT-TGTTTTTCATTCC---CTG-AAT---GTCAGATT-TCCGCTTGTTG-AC-GATG-G-C--GGT--GAT-CTCT---C-----GATGT--AAG-ATTTCTC-CT-----TG-TTGGT-CGGCGG-CTGTTGTCAGTTT--------CCCG-TAGTTC--GTTTCT-GTATCGG---CCTTC-TCA---GATTGGACATTG--AAC------GCCAGT-T-CTTCATA-CCGGGGATAAATTC----TG-GTCTCT--AGCTCTTC--------C-AGATCTTTTTG---TAG-CCTTT-------C--TGTATT-A---GCGCCGAGTT-TTT---CCAG-A-ATATCTG---A---------TATA--TCG-TGACCTTT-GTG-TTCA-CCT--GA-GGAGA--CGCA--GG-TA-ATACAGATAG-------GAATG--TCACAT--T----TCTCACAGTAATGT-----TTACAATGT--TTA---TCAGA---GT--GTT-TC-GGACAT--ATTGTGTAGT-TA---------GGAGTAG---------ACTCTCTC-TGTA-G-GA---AGG--GCAC-GACTTTGTGT----CT-TTTAGA-CGAATC-GG--ATAAGTGCTCCCC-AACA-------CAG---tctaggtggggtgcagaaagggaaaggggggagggaactgagtgaggctttgttggtattttcccaggtagaaaaaaatacgggcagatgtaaatcgcactctatatttaagcggtaatgatccagaagcggcgcggatatctaagattgtatagttatcgcaaggaatattaaggaagactcatttgtgtatttagtaattcgttcaagtcggcaatggaatcttgttgaggcttcccgcttcttttctgatgtgaatttcgtggttgtattttataaaataccaacgggttagatagggtggtgtttggttttccattttacactgaaataaaatcagactatctcgttagacaaatgagcagggtgggacggtctatacgaaggggtgtgaaggattttttccttttttgtttggtccggcatctttgtttatttttgcgttacccacttttcctctttctcaactggggatttttatttcaagtttgatttctggacgccattgtctgcatattcgtggggaaattctcaatgtgtttcttaaatttcttccagctcgttttgtaatgcttgtgttgtgtctacctgtgctgagtttttcaccagtaatattggaatattatcgtgacctttgtgattttcacgtcaacccgagtgccgcaatcgttattacgacagtttctaagagtaacgcaattgtatctcgctgagggttgtagtagcagcgtaaatttcggcgttcgttctcggtacattcttcggtagtatgggaagttttttttttttctctcgtgtaatataatggcacggactttatgttctttttggaccgaatctgatagagatgttttacttacataatattcagttaccacaaatgactttattagtacaagtcacactaatgagtctgtaaagggggacgataaattatcacacagaggtcacacatggggacaacctagagttcactgcctgcgggggagtgcatt
gi|12                         :                                                                                                                                                                                 ----CCATGTTC------TGTG-TTG-A----GG-GATAA-TGGTGA-TA-GAGAACCAAA-C-----CATTAGAG--CTGTTCTTTGTT--TATTTCG--AGG-AGAAAAAAT---TT---GGCACTGTTT--CTCG----T------TTAGGCCGGCAATGATT-CT-AAA----TTCAG--AATTCCTAGATTTGTA-AGT-------AG--AGTTTAAG-GA-AACTTCATTTG---ATT-TTAGAATCGATTTCAAG--TTGGTAATG--A-TCTGTTT-TAG--TT--CACT-AATTTTCTG-TGT-G-ATTTC-TT--GAGCGTTTT------TA-T--C-C--AG-G-Tgcctt
gi|3                          :                                                                                                                                                                                                                                                                  ctCTTTGTTGGTATTTTCCCAGGTAGAAAAA-A---ATACGGGCAGA-TGTAAATCG-CACTCTATATTTAAGC-GGTAATG-AT-CCAGAAGCGGCGCGG--A-TATCTAAGATTGTATAGTTATCGCAAGGAATATTAAG-GAAGAC-TCATTTGTGTATT-T-AGTAATTCGTTCAAG--TCGGCAATGGAA-TCTTGTT-GAGGCTTCCCGCT-TCTTTTCTGATGT-GAATTTC-GTGGTTGTATTTTATAAAATA-C--C-AACGG-GTTAG---ATAGGGTGGT--GTTT-GGTTTTCCATTTTACACTGAAATAAAATCAGACTATC--TCGTTAG-ACAAATGAG-CAGGGTGGGACGGTCTATACGAAGGGGTGTGAAGG-ATTTTTT-CCTTTTTTGTTTGGTCCGGC-ATC-TTTGTTTATTTTTGCGTTACCCACTT-TTCCTCTTTCTCAACTGGGGATTTTTA-TTTCAAGTTTGATTTCTG--GAC------GCCATTGT-CTGCATATTCGTGGGGAAATTCTCAATGTGTTTCTTAAATTTCTTC-------C-AGCTCGTTTTG---TAATGCTTG-----TGTTGTGT-CT-ACCTGTGCTGAG-T-TTTTCACCAGTA-ATATTGG---AATATTATCGTGACCTTTG-TGATTTTC-ACG-TCAACCC---GAGTG--C--CGCAATCGTTA-TTAC-GACAGTTTCTAAGAGTA--ACGCAA--TTGTATCTCGCTG-AGGGTTGTAGTAGCAGCGTAAATT---TCGGC---GTTCGTTCTCGGTACATTCTTC-GGTAGTATG---------GGA--AGTTTTTTTTTTTTCTCTCGTGTA-ATAT---AATG-GCACGGACTTTATGTTC--TT-TTTGGACCGAATC-TGATAGAGATGTTTTACTTACATAATATTCAG---TTACCACA-AATGACTTTAT-TAGT-ACAAGTCACA---CT-AAT-GAGTCTGTAAAG----GGGGACGATAAATTATCACAC--AGAGGTCACACAT-G--GGGA--CAACCTAG---AGTTCACTGCCTGCGGGGGAGT---GC-----ATTt
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                cggcgtaactggatggtcgggtgtagtcgcggggcatatcatatagtaatatatgttatttagactggaagaggtgaatttgattacagcttgtgggacttcatgtctacacgagaacctgttctgtttaaatcccagataatgatgaccatggtaaccaaatcattttctaggtggggtgcagaaagggaaaggggggagggaactgagtgaggC--GTTGTG-AACTCGG---CAATC-TCA---GTTTGGACACTGAAGACATTGAGGACACT-CGCTTCATA-TCGGGGGTGTATTC----TT-GTCTCT--AGTTCTCTAGTTTGTCC-ATATCTTTCTG---AAT-GCTTTGCGTTTGA--TAT-TT------CAT---A-T-TTT---GCAG-G-ACCTCTT---A---------TAGA--TAG-AATCCTTT-GTG-TTTA-CC------TGA-G---G------------ATAGACAG-------GAATG--TCACAT--T----CCTGACAGTAAAGT-----TCGCAGTGT--TTG---TCGAC---AT--GTT-TC-GGACAT--TTGGGATTAT-T------------AGCAG---------ACTTTTCG-TATT-A-CC---GGT----AC-GACCTTGTGT----CT-TTTA
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ACAGATAG-------GAATT--TTACAG--T----TATCACAATAATGT-----TCACAATCC--TTG---TCAGC---GT--GTT-TA-GAACAG--CTAGAGTATT-TGTAGTTTTTAGAAGTAA---------ATTTTTTA-TGCA-G-GTTGTAGC--GGAC-GACTTTGTGTTTATCG-TC-AGA-AGAG----G--AAAGGTGTTTGCT-TACA-------CAG---TCGGTGCA-TA-AA-CTGACGTCAC-A-CTGTT-CACAGC--AATAGA----GA--AG----TGGGTTAGT---CC----CAC--AAAGGCCACACAA-T--AAGA--CGTCCT-G---GG--CAC-GT--G---GG---T---CC-----ATGTCT----TGT-CT--CAAG-----GGTCACACGGGTAGTTTACTGTCA---ATAAA-------------AGAAATGAACTTTAA--T------ATGATAAAAAAAA---CCAA

Unaligned ( gi|9 ): TAATGGGTAACGATGAGAGAGATCCAAACCACAGAGAATTCGAAATAACTGATTTGTCGGCATAGACTTCGGTGAGAAGGCTGGTAAAGCCGCAGTGATTTTAGGAGGAATCTTTAAGAGATGTGTCAGGCTTGGTTTGAGTTGGAGGGACTGTGAGATGTCATTAGATCCCAGGATGTTATTGATGTCTGTAATGGCTTGGTGCACGGTATCTATCAGCTGCTCTATTTCTGTTTCAGTCTTTCACTCAGGACCTTGAGGTGTTGGGTTTTCATTTCATGTACTCTGAATTTCAGATTATTGACAAGGATATTAATTGCATTGTGTCAGTCTTCTCCACGTTCAGAAATGGCTGTTGTCAGTTTGCTATATTCTGTATCAAGATTCGCTATCTCTGTTTTAACTTCAGATGCAGTTTTGTCATATTTTGGACATAACACGTTTTCAAGGTTTACCAGATTTTTTCAAATTTCTTATCGCATTAAGACT
Unaligned ( gi|13 ): ACAAAACTGCGATTATTAAAATGGAACCAAAGTTAACCATCCATCCGCCCTCAAAATTAAACGTATGATCAAATATCCGGGTGATATATAATTCATTGACCACACAGATATCGATATCTAGATGACACTACAATGTTAGAATGTGCATTGCCATATAATTTTGTCTACCCTGATAATCCAACATGACTTCCCTGTTATTTCGCCCGTCGATCAAGTCCATGAACCTGAGCGGCG
Unaligned ( gi|14 ): CGATGTCAGAAGATGCGTACATATATATAATTTTGTCTCACCTGAAAATTCAACATGGCCTCCGCGTTATTCTGCCTTTCAGCCTAGTCCCTTTATTAGATACCTGTGTGACG
Unaligned ( gi|16 ): CACCAAATNATCCAACATGGCCTCCTTGTTCTATCGACCTCCAGTCTCGCCCTGTGATTAAATACCTGTGTGACGT
Unaligned ( gi|18 ): GACAGCGAAGGCTGTATAGATATCTATACCAGTGTCTATGGTTGCGGTGCAATCGCGGTTCATCAGCAGTG
Unaligned ( gi|19 ): CTGAATTTTCCTCAGAAATCGATATTAGTCGGTGACTTTGTGTTTTCCCGAGTAGACACAGGTA

lowQualScore                  :                                                                                                                                                                                                                                         44444444444444444444                                                       111111                           1111111                      111111     111  1111        111111                                           11111111                    11111       1111                                   11111      1111    111111                       11111                                                                                                                                  1111                                     111111                            2222222222222            2222222                                       1                     11111                    11111             2222222                      11111    11111                                                 111111                                     111111                 11111111                           22222    1111  11111        1     1111                                      111     33333333333333333333                      1111111            11                      11111                                         11            2222222222       1111111                 111111  111              1111111111                                    1111111        1111                              1111111                1111         111111111                               111                      111  11111         11111    2222                        1111111     6666666666666666666666666666666666666666666666                 
lowQualScore                  :                                                                                                                                                                                                                               1  0  66  99999999999999999999              4        4    8        1   4 55  777  4  111111  4     4      777         4444444           77 3       555555     000  0000        444444         777 4     4 4     4  8          4 44444444   4     55       4 00000 4     4444        2   4 4     55 4   777     99999      2222    111111  1  77  0    4  4     00000      4  777  777       4       88888888    8888     4  4           4  4 4         1 4      777  6 1    9999    0  4  7777   777  4444        4  44  4    4 777 55    3    111111   777 55     9999  777     9999999999999            2222222     4 7777       4           4    4 1 6 66    66   4   777  11111      66 4      66  11111     4    4  3333333  55     4     66 0   11111 4  00000       4 4      8888   4  4  55           4 55   111111      4 4       55 4         777     777777    4  777  4    44444444 4             777   77    22222    9999  00000        5 5   0000   5  11  5 888 5  66    5       77   333  1  55555555555555555555    888    5 0        4444444     66  0  00  777           1  4  11111   0   7777  777    777   66   4    4    22   1      4 1111111111       4444444  2    7777  0 4 222222  444    4   3     5555555555      5      55 66   1       5  0   6666666     44 1111  66 5   5 1 999  6  5        7777777   5  0 4   77  2222    1 1  444444444                     99 1    6 111  99      99       6  111  66666     8   88888    1111   0    0  3            9999999     0000000000000000000000000000000000000000000000              2  
lowQualScore                  :                                                                                                                                                                                                                               .  .  ..  ....................              .        .    .        .   . ..  ...  .  ......  .     .      ...         .......           .. .       ......     ...  ....        ......         ... .     . .     .  .          . ........   .     ..       . ..... .     ....        .   . .     .. .   ...     .....      ....    ......  .  ..  .    .  .     .....      .  ...  ...       .       ........    ....     .  .           .  . .         . .      ...  . .    ....    .  .  ....   ...  ....        .  ..  .    . ... ..    .    ......   ... ..     ....  ...     .............            .......     . ....       .           .    . . . ..    ..   .   ...  .....      .. .      ..  .....     .    .  .......  ..     .     .. .   ..... .  .....       . .      ....   .  .  ..           . ..   ......      . .       .. .         ...     ......    .  ...  .    ........ .             ...   ..    .....    ....  .....        . .   ....   .  ..  . ... .  ..    .       ..   ...  .  ....................    ...    . .        .......     ..  .  ..  ...           .  .  .....   .   ....  ...    ...   ..   .    .    ..   .      . ..........       .......  .    ....  . . ......  ...    .   .     ..........      .      .. ..   .       .  .   .......     .. ....  .. .   . . ...  .  .        .......   .  . .   ..  ....    . .  .........                     .. .    . ...  ..      ..       .  ...  .....     .   .....    ....   .    .  .            .......     ..............................................              .  
lowQualScore                  :                                                                                                                                                                                                                               9  1  11  77777777777777777777              4        0    0        0   0 55  000  0  555555  0     0      888         4444444           99 6       999999     000  6666        444444         000 0     0 0     0  0          0 55555555   0     44       0 00000 0     0000        5   0 0     55 0   000     77777      5555    555555  0  22  4    0  0     00000      0  000  000       0       99999999    5555     0  0           0  0 0         0 0      000  6 0    3333    1  0  0000   888  7777        0  55  0    0 000 55    0    555555   444 55     4444  888     4444444444444            2222222     4 9999       4           4    4 1 8 11    11   4   888  11111      11 4      11  11111     4    4  3333333  66     4     11 9   11111 7  00000       0 0      5555   0  0  44           0 55   555555      0 0       55 0         000     000000    0  000  0    55555555 0             888   22    55555    6666  99999        0 0   1111   0  22  6 888 0  00    0       00   888  0  11111111111111111111    888    0 5        4444444     11  7  66  888           0  4  11111   9   1111  888    888   11   4    4    22   1      4 4444444444       4444444  2    9999  8 4 333333  000    4   0     3333333333      0      22 99   4       0  5   2222222     00 4444  77 7   7 0 333  6  7        9999999   7  7 3   99  1111    0 4  000000000                     22 0    7 777  22      22       7  777  77777     0   00000    2222   2    2  5            8888888     8888888888888888888888888888888888888888888888              5  
consensus                     :                                                                                                                                                                                                                        ACAGCTAACACTG--TA---ATA--CT--G-C-----CATACCCAGTGTCT-GTGGTGGC-GGTG-AGTCGCGGNTCA-T--CA---AG-CA------GT-GGTTT-GACTGG---AGGAGACGA-------TACAGCTTCTG--GTGACTTCA--T---TGCCT---CG----CCATGTTC------TGTGTTAAT---G-GATAA-T-GATGA-CA-GAGAACCAAA-C--------ATT-TCATTN-AGCTGAT-C-----T-TTGTT----TATTTTCCGAGG-A-GAAAA--A-CTT---GGCAAT-TTTAACTCG----GACT------TTNGGC-GGTAATG-TT-CTAAA-----CTCGGA-AT---TC---CTAGATT-TGTAAGT---A----GAGG----TTAAG-GA-GACATCATTTG-AT-T-TTAGTATTGCT-TTCAAG---TCGGNAATG--A-TCTGTTT-GA-G--TTC--GGT---TATTTTCTG-TGC-GA-TTTC-T---T--CTGTGTTTT------TATC--C--AGGGT----AG---ATAGG-T--T--GTTT-TGTTTTTCATTTC-------CTGAA-TG---TCAGATT-TCCGTCGGTTG-ACAA-TGGGC--GGTG--ACC-TCT---CG-----GTGTAA--G-ATTTCT--CC-----TTGTT-GGTC-GG---CGGTCTG-TTGTT-AGTTT--CCCGT-----ACTT-----CGTTTCT-A-ACTCGG----CTT-TC-TCA-GTTTGGACATC-G--GAC------GCCATT-T-CTTCATA--T-CGGGGATAA---ATTCT----G-GTCT-CT---AG-TTCT--------T-CCAAATCTTTTTG---TAA-GCTTT-----TGTTGT--TT-A---GCGCCGAG-T-TTT---CCAG-AATATCNG---A-TAT-ATCG-TGACCTTC-GTG---TTCAC-------CT-GAGG-A-A--CGCA---GGTA-ATACAGACAG-------GAATG--TCGCA--TT---TCTCGCAGTAAAGT-TC-----GCAGTGT-T--TT---TCGG---CGT--GTT-TCGG-ACAT--TTCGGGTAGT-TG---------GGAGTAG-------ACTTTCTC---TGTA-A-AT---AGT--GCAC-GACNTTGTG----T--CG-TTTAGA-CGAATC-CG--AGAGGTGTTTC-CCTACG-------CAGTTAGC---GCA-NA-GAC-TTAC--GTTAC-AAAGTTCA---C---AAT-GACTCTGT--AG----GGGGNCAGT---TT----CACAGAGGTCACACAGGAGGA--CNTCCT-G---AG--CACTGC--GCCGGGG-GT---GC-----ATTTC-TGT-CG--CCGG----GGTCACACGAGNAGTTTACTGTCA---AT--AAGAA-------------AT----TTTGA--CA-GAT-AAAAA-AA---CCAAACTAAAATTACANTA
Reference ( family-271 )      :                                                                                                                                                                                                                        ACAGCTAACACTG--TA---ACA--CT--G-C-----CATACCCAGTGTCT-GTGGTGGC-GGTG-AGTCGCGGNTCA-T--CA---AG-CA------GT-GGTTT-GACTGG---AGGAGATGA-------TACAGCTTCTG--GTGACTTCA--T---TGCCT---CG----CCATGTTC------TGTGTTAAT---G-GATAA-T-GATGA-CA-GAGAACCAAA-C--------ATT-TCATTN-AGCTGAT-C-----T-TTGTT----TATTTTCCGAGG-A-GAAAA--A-CTT---GGCAAT-TTTAACTCG----GACT------TTNGGC-GGTAATG-TT-CTAAA-----CTCGGA-AT---TC---CTAGATT-TGTAAGT---A----GAGG----TTAAG-GA-GACATCATTTG-AT-T-TTAGTATTGNT-TTCAAG---TCGGNAATG--A-TCTGTTT-GA-G--TTC--GGT---TATTTTCTG-TGC-GA-TTTC-T---T--CTGTGTTTT------TATT--C--AGGGT----AG---ATAGG-T--T--GTTT-TGTTTTTCATTTC-------CTGAA-TG---TCAGATT-TCCGTCGGTTG-ACAA-TGGGC--GGTG--ACC-TCT---CG-----GTGTAA--G-ATTTCT--CC-----TTGTT-GGTC-GG---CGGTCTG-TTGTT-AGTTT--CCCGT-----ACTT-----CGTTTCT-A-ACTCGG----CTT-TC-TCA-GTTTGGACATC-G--GAC------GCCATT-T-CTTCATA--T-CGGGGATAA---ATTCT----G-GTCT-CT---AG-TTCT--------T-CCAAATCTTTTTG---TAA-GCTTT-----TGTTGT--TT-A---GCGCCGAG-T-TTT---CCAG-AATATCGG---A-TAN-ATCG-TGACCTTC-GTG---TTNAC-------C--GANG-A-A--CGCA---GGTA-ATACAGACAG-------GAATG--TCGCA--TT---TCTCGCAGTAANGT-TC-----GCAGTGT-T--TT---TCGG---CGT--GTT-TCGG-ACAT--TTCGGGTAGT-TG---------GGAGTAG-------ACTTTCTC---TGTA-A-GT---AGT--GCAC-GACTTTGTG----T--CG-TTTAGA-CGAATC-CG--AGAGGTGTTTT-CCTACG-------CAGTTAGC---GCA-NA-GAC-TNAC--GTNAC-AAAGTTCA---C---AAT-GACTCTGT--AG----GGGGNCGGT---TT----CACAGAGGTCACACAGGAGGA--CNTCCT-G---AG--CACTGC--GCCGGGG-GT---GC-----ATTTC-TGT-CG--CCGG----GGTCACACGAGAAGTTTACTGTCA---AT--AAGAA-------------AT----NTTAA--CA-GAT-AAAAA-AA---CCAAACTAAAATTACAGTA
gi|1                          :                                                                                                                                                                                                                        ACAGCTAACACTG--TG---------T--G-CAAATTCATACCCAGTGTCT-GTGGTGGC-AGTG-AGTCGCGGTTCA-T--CA---AG-CA------GT-GGTTT-CACAAA---AGGGGACGA-------TACAGCTTCTG--GTAATTTAA--T---TGTCT---TG----CCATGTTC------TTTGTTGAT---G-GATAA-T-GGTGA-CA-AAGAGCCAAA-T--------ACT-TCTTTA-AGTTGATACATGTAT-TTGCT----TAT---------------AA--A-CTC---GGTAAT-GTCA-CTCG----GACT------TTCGAC-GGTAATG-TT-CTAAA-----CACGAA-AT---TC---CTAGATT-TGTAGGC---A----GAAG----TTAAG-GA-TATATCATTTG-AT-T-TTAAAATTGAT-TTCAAG---TCAGAAATG--G-TCTGTTT-AA-G--TTT--CGC---TATTCTCTG-TGT-GA-TTTC-C---A--CTTCATTTG------TGTT--C--AGGGT----AG---ATAGG-T-----GTTT--GTTTTTCATTTC-------CCCAA-TT---TCAGATT-TCCGTTGGTTG-ACAA-TGG-C--GGTG--ATC-TCT---TG-----GTGTAA--G-ACTTTT--CC-----TTGTT-GGTC-GG---CGG-CTG-TTGTT-AGCTT--CTCGT-----ACTT-----TGTTTCT-A-ACTCGT----CTT-TC-TCA-GTTTGGATATC-G--AAG------GCCATT-T-TTTCATG--T-TGGGGATAA---ATTCT----C-GCCT-CC---AG-TTCT--------T-CAAAATCTTTTTG---GAA---TTT-----TTTTGT--TTTA---GCACTGAGGT-TTT---CCAG-AATATCGG---A-TAT-ATCG-TGGCCTTT-GTG---TGTAC-------CT-GACA-AGA--CGCA---GGTA-ATACAAACAG-------GAGTG--TCACA--TT---TCTCACAGTGATAT-TC-----GCATTGG-T--TT---TCGG---CGT--GTT-TCGG-ACAA--TTCGGGTAAA-TA---------GGAGTAT-------AAATTCTC---TGGG-A-AT---AGT--GCAC-AACTTTATG----G--TG-TTTAGA-CGAATC-CG--ATATGTGTTTT-CCTACG-------CAGTTAAC---ACA-AA-TAT-TTAT--GTTAC-AAAGTTCA---C---AAT-AACTATCT--AG----GGGGACAGT---GT----CACAGAGATCACACAGGAGGAACTTTCCT-GGGAAG--CACTGC--GCCGGGG-AT---GTCTCCGATTTC-TGTACGCTCCGGCTCCCGTTACACAAGATGTTCACTGTTATTTAA--AAAAA-------------AT----CTCAAACCA-AAT-AGA----------AAACTAAAATTACAGTA
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ACAGATAG-------GAATT--TTACA--GT---TATCACAATAATGT-TC-----ACAATCC-T--TG---TCAG---CGT--GTT-TAGA-ACAG--CTAGAGTATT-TGTAGTTTTTAGAAGTAA-------ATTTTTTA---TGCA-G-GTTGTAGC--GGAC-GACTTTGTGTTTAT--CG--TCAGA-AGAG----G--AAAGGTGTTTG-CTTACA-------CAGTCGGT---GCA-TA-AAC-TGAC--GTCAC-ACTGTTCACAGC---AATAGA----GA--AG----TGGGTTAGT---CC----CACAAAGGCCACACAATAAGA--CGTCCT-G---GG--CA--------CGTGG-GT---CC-----ATGTCTTGT-CT--CAAG----GGTCACACGGGTAGTTTACTGTCA---ATAAAAGAA-------------ATGAACTTTAA--TATGATAAAAAA-AA---CCAAattgctatatatggaactccccttttctcagaatcatatatgtaattgatatcaaattgtacattatctatgacacggtgcaatgtcagaatccgtttatataattttgtctcacctaaaatccatgtaatgtgactctttaatcaagccccgtgatgaaataccagttcgtgagcggcacag
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              -----CGTTGTG-A-ACTCGG----CAA-TC-TCA-GTTTGGACACT-GAAGACATTGAGGACACT-CGCTTCATA--T-CGGGGGTGT---ATTCT----T-GTCT-CT---AG-TTCTCTAGTTTGT-CCATATCTTTCTG---AAT-GCTTTGCGTTTGATAT--TT---------CATA-T-TTT---GCAG-GACCTCTT---A-TAG-ATAG-AATCCTTT-GTG---TTTAC-------CT-GAGG-A-------------------TAGACAG-------GAATG--TCACA--TT---CCTGACAGTAAAGT-TC-----GCAGTGT-T--TG---TCGA---CAT--GTT-TCGG-ACAT--TTGGGATTAT-T------------AGCAG-------ACTTTTCG---TATT-A-CC---GGT----AC-GACCTTGTG----T--CT-TTTAtatggta
gi|12                         :                                                                                                                                                                                                                                                                                                                                                                                                  ----CCATGTTC------TGTGTTGAG---G-GATAA-T-GGTGA-TA-GAGAACCAAA-C-------------CATTAGAGCTGTT-C-----T-TTGTT----TATTT--CGAGG-A-GAAAA--AATTT---GGCACTGTTT--CTCG-------T------TTAGGCCGGCAATGATT-CTAAA-----TTCAGA-AT---TC---CTAGATT-TGTAAGT---A----GAGT----TTAAG-GA-AACTTCATTTG-AT-T-TTAGAATCGAT-TTCAAG---TTGGTAATG--A-TCTGTTT-TA-G--TTC--ACT---AATTTTCTG-TGT-GA-TTTC-T---T--GAGCGTTTT------TATC--C--AGG
gi|15                         :                                                                                                                                                                                                                      ctACAGCTAACACCG--TA---A-A--GTAAG-T-----CATACCAAGTGTGT-ATGGTGGC-GGTG-AATCGCGGCTCA-T--CA---CG-CA------GT-GGTTT-GACTGG---ATGAGATGA-------TACAGCTTCtt
gi|17                         :                                                                                                                                                                                                                        ACAGCTAACACTG--TA----TA--GTTGG-T-----CATACCCAGTGTCT-GTGGTGGC-TGTG-AGTCGCGGGTCA-T--CA---AG-CA------GT-GGTTT-G
gi|18                         :                                                                                                                                                                                                                        ACAGCGAAGGCTG--TATAGATA--T-----C-----TATACC-AGTGTCT-ATGGTTGC-GGTGCAATCGCGGTTCA-T--C----AG-CA------GT-G
gi|2                          :                                                                                                                                                                                                                       gACAGCTAACACTG---A---ATAGTCT--G-T-----CATACCCAGTGTCT-GTGGTGGC-GGTG-AATCGCGGTTCA-T--CG---AG-TA------AT-GGTTT-GACTGG---AGGAGATGA-------TACGGCTTC
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                                                                       gTCAAT---T-GATAA-T-GACGA-CA-GACAACCAAA-C--------ATT-TTATTG-AGCTGAT-C-----T-TTGTT----TATTTTCTGAGG-A-GAAAA--A-CTT---GGCA-C-TGTAACTCG----GACT------TTAGGA-GGTAATG-TT-TTAAA-----CTCGGA-AT---TC---CTAGATT-TGTAAGT---A----GAGG----TTAAG-GA-GACATCATTGG-AT-T-TTAGTATTGAT-TTCAAG---TCGGCAATG--C-TCTGTTT-GA-T--TTC--TGT---AATTTTCCG-AGT-GA-TTTC-T---T--CCATGTTTT------TATC--C--AGGGT----AA---ATAGG-T-----GTTT--GTTTTTCATGTC-------CTGAA-TG---GAAGATT-TCCGCTGGTCG-ACAA-TGG-C--AGTG--ATT-TCT---CG-----GTGTAA--G-ATTTCT--CC-----TTGTT-GGTC-GG---CGG-CTG-TTGTT-AATTT--CGCGA-----AATT-----CGTTTCT-A-GTTCGG----CTT-TC-TCT-GTCTGGACATC-G--GAC------GCCATT-T-CCTCATA--T-CGCGGATAA---ATCCT----G-TTTT-GT---AA-TTCT--------T-CTAAATCTTTTTG---TAA-ACTCTC----TGTT----TT-A---GCGCTGAG-T-TCT---------------G---A-TAT-ATCG-TGACCTTT-GTG---TTTTC-------C--AAAT-A-ATGCGCA---GGTA-GAACAGACAG-------GAACA--TCACA--TG---TTTCGCAATAAAGT-TT-----GCAAT------CT---TCGGTTGCGT--GTT-GCGG-ACAT--TTTGCGTAGT-TA---------GGAGTGG-------ATATTCGG---TGTATA-AA---AG---AAAC-GACATTGTG----C--TT-TTTAGA-GAAATC-CG--AGAGGTGTTCC-CCAACA-------CAG---GCCTTGCA-TA-GAC-TGAC--ATTAC-AAAGTTCA---C---AAT-GACTCTGT--AG----GGGGGCAGT---CT----CACAGAGGTCACACCGCAGGA--CGTCCT-G---GG--CACTGC--GCCGGGG-GTGCAGC-----ATTTC-TGA-TG--TCGG----GGTCACACGAGAAGTTTACTGTCA---AT--AAAAAGGGAACCTTAGATAT----GTTGA--C---AT-AATGA-GA---TTAAAATAAAATaattgataatgacgacagacaaccaaacattttattgagctgatctttgtttattttctgaggagaaaaacttggcactgtaactcggactttaggaggtaatgttttaaactcggaattcctagatttgtaagtagaggttaaggagacatcattggattttagtattgatttcaagtcggcaatgctctgtttgatttctgtaattttccgagtgatttcttccatgtttttatccagggtaaataggtgtttgtttttcatgtcctgaatggaagatttccgctggtcgacaatggcagtgatttctcggtgtaagatttctccttgttggtcggcggctgttgttaatttcgcgaaattcgtttctagttcggctttctctgtctggacatcggacgccatttcctcatatcgcggataaatcctgttttgtaattcttctaaatctttttgtaaactctctgttttagcgctgagttctgatatatcgtgacctttgtgttttccaaataatgcgcaggtagaacagacaggaacatcacatgtttcgcaataaagtttgcaatcttcggttgcgtgttgcggacattttgcgtagttaggagtggatattcggtgtataaaagaaacgacattgtgctttttagagaaatccgagaggtgttccccaacacaggccttgcatagactgacattacaaagttcacaatgactctgtaggggggcagtctcacagaggtcacaccgcaggacgtcctgggcactgcgccgggggtgcagcatttctgatgtcggggtcacacgagaagtttactgtcaataaaaagggaaccttagatatgttgacataatgagattaaaataaaatggaaattcaacacatcaatataactttaatttcaccaaactctcaaaatgaaatgaaatctgtctcattgattacataaatatcgatattaatgacactacaaagtcaaaacatgcgtatataattttgtcttactagaaaattcaacatggcctccctgttctgtcgaccttcctccagtctggtcctataaataaatacttgtgcggcga
gi|3                          :                                                                                                                                                                           gacagctaacactgaatagtctgtcatacccagtgtctgtggtggcggtgaatcgcggttcatcgagtaatggtttgactggaggagatgatacggctTGGTCG--GGTGTAGTCGCGGGGCA-TATCATATAG-TAATATATGT-TATTTAGACTGG---AAGAGGTGAATTTGATTACAGCTTGTG--G-GACTTCA------TGTCTACACGAGAACC-TGTTC------TGTTTAAATCCCA-GATAA-T-GATGACCATGGTAACCAAATC--------ATT-Tggaaattcaacacatcaatataactttaatttcaccaaactctcaaaatgaaatgaaatctgtctcattgattacataaatatcgatattaatgacactacaaagtcaaaacatgcgtatataattttgtcttactagaaaattcaacatggcctccctgttctgtcgaccttcctccagtctggtcctataaataaatacttgtgcggcga
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                            cggcgtaactgga-C-----T-TTGTTGG--TATTTTCCCAGGTA-GAAAA--A-AATACGGGCAGA-TGTAAATCG----CACTCTATATTTAAGC-GGTAATG-AT-CCAGAAGCGGCGCGGA-TA---TC---TAAGATTGTATAGTT---ATCGCAAGGAATATTAAG-GAAGAC-TCATTTGTGTAT-TTAGTAATTCG-TTCAAG---TCGGCAATGGAA-TCTTGTT-GA-GGCTTCCCGCT---TCTTTTCTGATGT-GAATTTC-G---TGGTTGTATTTTATAAAATACCAAC--GGGTT----AG---ATAGGGTGGT--GTTT-GGTTTTCCATTTTACA----CTGAAATAAAATCAGACTATC--TCGTTAG-ACAAATGAGCAGGGTGGGACGGTCTATACGAAGGGGTGTGAAGG-ATTTTT--TCCTTTTTTGTTTGGTCCGG---CA-TCT--TTGTTTATTTT--TGCGTTACCCACTTTTCCTC-TTTCTCA-ACTGGGGATTTTTATT-TCAAGTTTG-ATTTCTG--GAC------GCCATTGT-CTGCATA--TTCGTGGGGAA---ATTCTCAATGTGTTT-CTTAAAT-TTCT--------T-CCAGCTCGTTTTG---TAATGCTTG-----TGTTGTGTCT-ACCTGTGCTGAG-T-TTTTCACCAGTAATATTGG---AATATTATCG-TGACCTTT-GTGATTTTCACGTCAACCC--GAGT-G-C--CGCAATCGTTA-TTAC-GACAGTTTCTAAGAGTA--ACGCAA-TTGTATCTCGCTG-AGGGT-TGTAGTAGCAGCGT-AAATT---TCGG---CGTTCGTTCTCGGTACATTCTTC-GGTAGTATG---------GGA--AGTTTTTTTTTTTTCTCTCGTGTA-ATAT---AATG-GCACGGACTTTATG----TTCTT-TTTGGACCGAATC-TGATAGAGATGTTTTACTTACATAATATTCAGTTACC---ACA-AATGACTTTATTAGT-AC-AAG--TCA---CACTAAT-GAGTCTGTAAAG----GGGGACGATAAATTATCACACAGAGGTCACACATGGGGA--CAACCTAG---AGTTCACTGCCTGCGGGGGAGT---GC-----ATTtctaggtggggtgcagaaagggaaaggggggagggaactgagtgaggctttgttggtattttcccaggtagaaaaaaatacgggcagatgtaaatcgcactctatatttaagcggtaatgatccagaagcggcgcggatatctaagattgtatagttatcgcaaggaatattaaggaagactcatttgtgtatttagtaattcgttcaagtcggcaatggaatcttgttgaggcttcccgcttcttttctgatgtgaatttcgtggttgtattttataaaataccaacgggttagatagggtggtgtttggttttccattttacactgaaataaaatcagactatctcgttagacaaatgagcagggtgggacggtctatacgaaggggtgtgaaggattttttccttttttgtttggtccggcatctttgtttatttttgcgttacccacttttcctctttctcaactggggatttttatttcaagtttgatttctggacgccattgtctgcatattcgtggggaaattctcaatgtgtttcttaaatttcttccagctcgttttgtaatgcttgtgttgtgtctacctgtgctgagtttttcaccagtaatattggaatattatcgtgacctttgtgattttcacgtcaacccgagtgccgcaatcgttattacgacagtttctaagagtaacgcaattgtatctcgctgagggttgtagtagcagcgtaaatttcggcgttcgttctcggtacattcttcggtagtatgggaagttttttttttttctctcgtgtaatataatggcacggactttatgttctttttggaccgaatctgatagagatgttttacttacataatattcagttaccacaaatgactttattagtacaagtcacactaatgagtctgtaaagggggacgataaattatcacacagaggtcacacatggggacaacctagagttcactgcctgcgggggagtgcatt
gi|4                          : cggcgtaactggatggtcgggtgtagtcgcggggcatatcatatagtaatatatgttatttagactggaagaggtgaatttgattacagcttgtgggacttcatgtctacacgagaacctgttctgtttaaatcccagataatgatgaccatggtaaccaaatcattttctaggtggggtgcagaaagggaaaggggggagggaactgagtgaggACAGCTA-CATTG--TA---ACA--CT--G-C-----CATACCCATTGTCT-GTGGTGGC-GGTG-AGTCCTGGATCA-T--CA---AG-CA------AT-GATTC-GACTGG---AGGAGACGA-------TATAGCTTCTG--GTGATTTTA--T---TGCCT---CG----CCATGTTC------TGTGT-AAT---G-GATAAAT-GATGA-CA-GAGAGCCAAG-C--------ATT-TCATTC-AGCTTAT-C-----T-TTGTT----TATTTTCTTAGG-A-GAATA--A-TTT---GGCAAT-TTTAACTCG----GACT------TTCGGT-GGTAATG-TT-CTGAA-----CTCGGA--T---TC---CTAGGTT-TGTAAGT---A----GAGA----TTAAG-GA-GACATCTTTTG-AT-T-TCAGTATTGCT-TTCAAG---TCCGAAATG--A-TCTGATT-GA----TTC--GGT---TATTTTCTG-TGC-GA-TTTC-T---T--CTGTATTCT------TAT---C--AGGGT----AG---ATAGG-T--T--GTTT-TGTTTTTCATTTC-------CTGAA-TG---TCGGATT-TCCGTCGGTTG-ACAA-TG--C--GGTG--ACC-TCT---CG-----GTGTAA--G-ATTTCT--CC-----ATGGT-GGTC-GA---CAATCTT-TTGAT-AATTT--CCCGT-----A-TT-----CGTTTCT-A-ACTCGG----CTT-TC-TCT-GTTCGGATATT-G--GAC------GCCATT-T-CTTTATA--T-CGGGGGGAA---ATTTT----G-GTCT-CT---AA-TTCC--------T-TCAAATCTTTTTG---TAA-ACTTT-----TGTTGT--TT-A---GCGCTGAG-T-TTT---CCAG-AATATCCG---A-TAA-CTTG-TGACCTTC-ATG---TTTAC-------C--GATG-A-A--CGCA---CGTA-ATACAGACAG-------GAATG--TCACA--AT---TCTCGCAGTAAAGT-TC-----GCAGTGT-T--TT---TCGG---TGT--GTT-TCGT-ACAT--TTCGGGTAGT-TG---------GGAGTAG-------ACTCTCTC---TGTA-A-AT---AGT--GCAC-GACATTGTG----T--CG-TTTAGA-CGAATC-CG--AGATGTGTTTC-ACTGCG-------CAGTTAAC---ACA-GA-GAT-TTAT--ATGAC-AAAGTTCA---C---AAT-GACTCTGT--AG----GGGGGCAGT---TT----CACAGATGTCACAAAGGAGGA--CTTCCT-G---AG--CACTGC--GCCGGGA-AT---GC-----ATTTC-TGT-TG--CCGG----GATGACACCAGCAGTTTACTGTCA---AT--AAGAT-------------AT----TTTGA--CA-GAT-AAAAACAATGTCCAAGCTAGAATTACATTA
gi|5                          :                                                                                                                                                                                                                        ACAGAGAACACTGCTTA---GTT--C---G-T-----TATATTCAGTGTCT-GTGATGGC-AGTG-AGTCGCGGGTCA-T--CA---AG-CA------GT-GGTTT-GACTATTATAGGAGATGA-------TACAGCTTCTG--GCAACTTCA--TAATTGCCT---CG----CCATGTTC------TGTGTTAAT---G-GATAG-T-GATGA-CA-GAGAACCAAA-C--------ATT-CCATTC-AGCTGAT-C-----T-TTGTT----TACTTTCCGAGG-A-GAAAA--A-CAT---GGTAAT-GT-AACTTG----GACT------TTTGGA-GGTAAGG-TT-CTAAT-----TTCAGA-AT---TC---CTAGATT-TGTAGGT---A----GAGG----TTAAC-GA-GGCATCATTTG-AT-T-TTAGTATTGCT-TTCAAG---TCCAAAATA--A-TTTGTTT-CA-G--TTC--AGT-----------------AA-TTTC-T---T--CTGTATTTT------TGTT--C--AGGGT----AG---ATACA-TG-TAAGTGTATGTTTTTCATTTC-------CTGAA-TT---TCAGATT-TTCTGCTATTG-ACAA-TGG-C--GGTG--ATC-TCT---TG-----GTGTAA--G-ATTTCT--CC-----TTGTT-GGTC-GG---CGG-CTG-ATAAT-AGTTT--CTCGT-----ACTT-----CGTGTCT-A-ACTCGT----TTT-TC-TCA-ATTTGGATATC-G--GAC------GCCATT-C-TTTCAAA--G-TTAGGATAA---ACTCT----T-GTCT-CT---AG-TTTT--------TTCCAAATCTTTTTG---TAA-AATTTC----TGTT----TT-A---GCGCTGAGGC-TTT---CCAG-AAATTCTG---A-TAT-ATCG-TGACCTTT-GTG---TTGAC-------CC-GAGGTG-A--CGCA---GGTA-ATGCAGACAG-------GAACG--TCGCA--TT---TTTCGCAGTGAAGT-TC-----ACATTGC-T--TT---TCGG---CGT--GTT-TCGG-ACAT--TTCGGGTAGT-TT---------GGAGTAG-------CCTTTCTC---TGTA-A-AT---AGG--GCAC-GACATTATG----T--CG-TTTAGA-TGGATC-CG--AGATGTGTTTT-CCTACG-------CAGTTAAC---ACA-GA-GGT-TTAT--GTTAC-AAAGTTCA---C---AAT-GACTCTGT--AG----GAGGACAGT---TT----CACAGAGGTCACACAGGAGGA--CTTCCT-G---AG--CACTGC--GCCGGGG-AT---GC-----ATTTC-t
gi|6                          :                                                                                                                                                                                                                           GCTAACAGCG--TA---GTC--CTC-GTC-----CATAGCCAGTGGCTTATGGTTGCAGGTG-AATCGCGCTTCGGT--CC---AGACA------ATTGGTTG-GACTTG-----GAGAT---------------TTCTGCGATGACTTCACTT---TGCGC---CG----C-ATGTTCGTTCTCTGTGTTTAT---GAGATAA-TCGATGA-AAAGGGAACCAAA-C--------ATTGTCACGG-AG-TGCT-C-----TCTTGG------ATTTTCGGAGG-ACGACAATCA-CTT---GGTAAT-GT-AA-TCGA---GACC------TTTGTA-GGCAATC-TTTCGGAA-----TTCGGTTAT---TC---CTAGATT-TGTAACT---A----AATG------AGA-GA-GAAATCATTGG-AT-TCTTAATATTGCC-TTCAAGGTTTC--ATATG--ACTTTGTTTTGA-G--TTC--AGTA--TATCTT--G-TGCTGG-TTTCAT---T--CTATGTTTT------TATT--CCAAATGC----AGCCGATAG-----T--GTTT-AGATTT-CATCTC-------CGCGA-TG---TCAGTTT-GCCGTTGTTTTTACAA-TGG-C--AGTG--ACC-TCT---CG-----GTGTAA--GTATTTCTTGCT-----TTGT---GTC-AA----GATTCGCTTGTT-AATTTTGCTCAT-----ACTT-----TGCTTGG-A-AACCGG----CTT-TCCTCA-GTTTTGACATT-C--GAT------GTCATT-T-CTTCATA--T-CGTGGACGT---ATTTT----G-A-CT-CT---AG-TTCC--------T-CCAAATTCTTTTGCACTAA-GGCTG-----TGTT-T--TT-A---GATCCGAG-TGTTT---TCAG-AACATCGGCATA-CAA-ATTGTTGGCCCTCTATGA--CTCAT-------CGGGAGG-A-C--CGCA---GGTAGAAACA-ACA--------GAATGTTTCGCAATTT---TCTCGCAGTAAAGTGTC-----ACAGTGTGT--TTTTGTCGC---CAT--GTT-CCGG-ACATGATGC-GGTAAT-AG---------GG-GT-G-------AC-TTCTT---TG---A-GT---AATGGGCAC-GACCTTGTG----T--TATTTTAGA-CGAATCGTG--AGAGGTGTTAT-GCGACA-------CAATT-GC---ACATTA-GAC-TAAT--ATGACAAAAGTTCG---CTA-AAC-ATCT-TGC--AGCCAAGTGTCCGAT---TT----CACTTAGATGACAacatgtgttgtatactgtttattaagaaagaaagaaaatattaattaatgatatcaacaggttgaaagaaat
gi|7                          :                                                                                                                                                                                                                                                                                                                             gacTT-GACTGG---AGGAGATGA-------TACAGCTTCTG--GGAACTTCA--T---TGTCT---CC----TCATGTTC------TGTGTTAAT---G-GATAA-T-GGTGA-TA-GAGAACCAAA-C--------ATT-TCATTC-AGCTTAT-C-----T-TTGTT----TATTTTCCCACG-A-GAAAA--A-CTT---GGTAAT-GT-AACTCG----GACT------TTAGGC-GGCAATG-TT-CTAAA-----TTCGGA-AT---TC---CTAGATT-TGTACGT---C----GAGG----TTAAG-GA-GATATCATTTG-AT-T-TTAGTATTGAT-TTCAAG---CCGGCAATG--A-TTTGTTT-GA-G--TTC--CCT---AATTTTCTG-TGT-GA-TTTC-T---T--CTGTGTTTT------TATC--C--AAGGT----AG---ATAAG----T--G-TT-TGTTTTTCATTCC-------CTGAA-TG---TCAGATT-TCCGCTTGTTG-ACGA-T-GGC--GGTG--ATC-TCT---CG-----ATGTAA--G-ATTTCT--CC-----TTGTT-GGTC-GG---CGG-CTG-TTGTC-AGTTT--CCCGT-----AGTT-----CGTTTCT-G-TATCGG----CCT-TC-TCA-GATTGGACATT-G--AAC------GCCAGT-T-CTTCATA--C-CGGGGATAA---ATTCT----G-GTCT-CT---AG-CTCT--------T-CCAGATCTTTTTG---T-A-GCCTT-----T-CTGTA-TT-A---GCGCCGAGTT-TTT---CCAG-AATATCTG---A-TAT-ATCG-TGACCTTT-GTG---TTCAC-------CT-GAGG-AGA--CGCA---GGTA-ATACAGATAG-------GAATG--TCACA--TT---TCTCACAGTAATGT-TT-----ACAATGT-T--TA---TCAG---AGT--GTT-TCGG-ACAT--ATTGTGTAGT-TA---------GGAGTAG-------ACTCTCTC---TGTA-G-GA---AGG--GCAC-GACTTTGTG----T--CT-TTTAGA-CGAATC-GG--ATAAGTGCTCC-CCAACA-------CAGgtaagcgatagaacttcgct
gi|8                          :                                                                                                                                                                                                                        ACAGCTA-CA-TG--TA---ACA--CT--G-C-----CATACCCATTGTCT-GTGGTGGC-GGTG-AGTCCTGGATCA-T--CA---AG-CA------AT-GATTC-GACTGG---AGGAGACGA-------TATAGCTTCTG--GTGATTTTA--T---TGCCT---CG----CCATGTTC------TGTGTTAAT---G-GATAA-T-GATGA-CA-GAGAGCCAAG-C--------ATT-TCATTC-AGCTGAT-C-----T-TTGTT----TATTTTCTTAGG-A-GAATA--A-TTT---GGCAA--TTTAACTCG----GACT------TTCGGT-GGTAATG-TT-CTGAA-----CTCGGA-AT---TC---CTAGGTT-TGTAAGT---A----GAGA----TTAAG-GA-GACATCTTTTG-AT-T-TCAGTATTGCT-TTCAAG---TCCGAAATG--A-TCTGATT-GA-G--TTC--GGT---TATTTTCTG-TGC-GA-TTTC-T---T--CTGTATTCT------TATT--C--AGGGT----AG---ATAGG----T--G-TT-TGTTTTTCATTTC-------CTGAA-TG---TCGGATT-TCCGTCGGTTG-ACAA-T-GGC--GGTG--ACC-TCT---CG-----GTGTAA--G-ATTTCT--CC-----ATGGT-GGTC-GA---C-ATCTT-TTGAT-AATTT--CCCGT-----ATTT-----CGTTTCT-A-ACTCGG----CTT-TC-TCT-GTTCGGATATT-G--GAC------GCCATT-T-CTTTATA--T-CGGGGGGAA---ATTTT----G-GTCT-CT---AA-TTCC--------T-TCAAATCTTTTTG---Tgcctt
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                         TAAT---G-GGTAA-C-GATGA-GA-GAGATCCAAA-CCACAGAGAATT-CGAAAT-AACTGAT---------TTGTCGGCATAGACTTCGGTG-A-GAAGG-----CT---GGTAA-----AGC-CGCAGTGATT------TTAGGA-GG-AATC-TT--TAA---------GAG-ATGTGTCAGGCTTGGTT-TG--AGTTGGA----GGGA----CT--GTGA-GATGTCATTAG-AT-C-CCAGGAT-GTTATTGATG---TCTGTAATG-------GCTT-GGTG--CAC--GGTATCTATCAGCTG-CTC-TA-TTTC-TGTTT--CAGT-CTTT------CACT--C--AGGACCTTGAG---GT--G-T--T--G-----GGTTTTCATTTCATGTACTCTGAA-TT---TCAGATT--------ATTG-ACAA--GGAT--ATTA--ATT-GCA---TT-----GTGTCA--G-TCTTCT--CC-----ACGTT----C-AGAAATGG-CTG-TTGTC-AGTTT--GCTAT-----ATTC-----TGTATCA-AGATTC-G----CTA-TC-TCT-GTTTTAACTTC-A--GAT------GCAGTT-T-TGTCATATTT-TGGACATAACACGTTTTCAA-G-GTTTACC---AGATTTT--------T-TCAAATTTCTTnnnnnnnnnnnnnnnnnnnnnnnnngtatgcgtttcacttcacaacggtcatacaa

Unaligned ( gi|13 ): ACAAAACTGCGATTATTAAAATGGAACCAAAGTTAACCATCCATCCGCCCTCAAAATTAAACGTATGATCAAATATCCGGGTGATATATAATTCATTGACCACACAGATATCGATATCTAGATGACACTACAATGTTAGAATGTGCATTGCCATATAATTTTGTCTACCCTGATAATCCAACATGACTTCCCTGTTATTTCGCCCGTCGATCAAGTCCATGAACCTGAGCGGCG
Unaligned ( gi|14 ): CGATGTCAGAAGATGCGTACATATATATAATTTTGTCTCACCTGAAAATTCAACATGGCCTCCGCGTTATTCTGCCTTTCAGCCTAGTCCCTTTATTAGATACCTGTGTGACG
Unaligned ( gi|16 ): CACCAAATNATCCAACATGGCCTCCTTGTTCTATCGACCTCCAGTCTCGCCCTGTGATTAAATACCTGTGTGACGT
Unaligned ( gi|19 ): CTGAATTTTCCTCAGAAATCGATATTAGTCGGTGACTTTGTGTTTTCCCGAGTAGACACAGGTA

lowQualScore                  :                                                                                                                                                                                                                                         4444444444444444444444                                                       111111                           1111111                         111     111  1111        111111                                           11111111                    11111       1111                                   11111      1111    111111                       11111                                                                                                                                  1111                                     111111                            2222222222222            2222222                                       1                     11111                    11111             2222222                      11111    11111                                                 111111                                     111111                 11111111                           22222    1111  11111        1                           11                 111111111111   11      2222                      1111111                                  11111         11                               11            2222222222       1111111                         111               2222222                                    1111111        1111                              111                           111111111                               111                      111  11111        22222222222222                         1111111     4444444444444444444444444444444444444444444444                 
lowQualScore                  :                                                                                                                                                                                                                               1  0  66  4444444444444444444444              4        4    8        1   4 55  777  4  111111  4     4      777      0  4444444           77 3       77 000     000  0000        444444         777 4     4 4     4  8          4 44444444   4     55       4 00000 4     4444        2   4 4     55 4   777     99999      2222    111111  1  77  0    4  4     00000      4  777  777       4       88888888    8888     4  4           4  4 4         1 4      777  6 1    9999    0  4  7777   777  4444        4  44  4    4 777 55    3    111111   5555    4  9999  777     9999999999999            2222222     4 7777       4           4    4 1 6 66    66   4   777  11111      66 4      66  11111     4    4  3333333  55     4     66 0   11111 4  00000       4 4      8888   4  4  55           4 55   111111      4 4       55 4         777     777777    4  777  4    44444444 4             777   77    22222    9999  00000        5 5   888    5  11  1 5 5   11    5       77   666666666666   55    5 0000    888    5 0        4444444     66  0 4 66  777           1  55555     0   00   777    777   66   4    4    22   1      4 1111111111       4444444  2    7777  0 4 999999  444    4   1      0000000      5      55 66   1      66  0   6666666     44 1111  66 5    1 1    5 5 5     5  000 5   6  2     99      1    999999999                     99 1    6 111  99      99       6  111  66666   0 8  99999999999999           22        8   7777777     9999999999999999999999999999999999999999999999              1  
lowQualScore                  :                                                                                                                                                                                                                               .  .  ..  ......................              .        .    .        .   . ..  ...  .  ......  .     .      ...      .  .......           .. .       .. ...     ...  ....        ......         ... .     . .     .  .          . ........   .     ..       . ..... .     ....        .   . .     .. .   ...     .....      ....    ......  .  ..  .    .  .     .....      .  ...  ...       .       ........    ....     .  .           .  . .         . .      ...  . .    ....    .  .  ....   ...  ....        .  ..  .    . ... ..    .    ......   ....    .  ....  ...     .............            .......     . ....       .           .    . . . ..    ..   .   ...  .....      .. .      ..  .....     .    .  .......  ..     .     .. .   ..... .  .....       . .      ....   .  .  ..           . ..   ......      . .       .. .         ...     ......    .  ...  .    ........ .             ...   ..    .....    ....  .....        . .   ...    .  ..  . . .   ..    .       ..   ............   ..    . ....    ...    . .        .......     ..  . . ..  ...           .  .....     .   ..   ...    ...   ..   .    .    ..   .      . ..........       .......  .    ....  . . ......  ...    .   .      .......      .      .. ..   .      ..  .   .......     .. ....  .. .    . .    . . .     .  ... .   .  .     ..      .    .........                     .. .    . ...  ..      ..       .  ...  .....   . .  ..............           ..        .   .......     ..............................................              .  
lowQualScore                  :                                                                                                                                                                                                                               9  1  11  9999999999999999999999              4        0    0        0   0 55  000  0  555555  0     0      888      7  4444444           99 6       99 000     000  6666        444444         000 0     0 0     0  0          0 55555555   0     44       0 00000 0     0000        5   0 0     55 0   000     77777      5555    555555  0  22  4    0  0     00000      0  000  000       0       99999999    5555     0  0           0  0 0         6 0      000  6 0    3333    1  0  0000   888  7777        0  55  0    0 000 55    0    555555   9999    0  4444  888     4444444444444            2222222     4 9999       4           4    4 1 8 11    11   4   888  11111      11 4      11  11111     4    4  3333333  66     4     11 9   11111 7  00000       0 0      5555   0  0  44           0 55   555555      0 0       55 0         000     000000    0  000  0    55555555 0             888   22    55555    6666  99999        0 0   888    0  22  0 0 0   99    0       00   111111111111   00    0 0000    888    0 5        4444444     11  7 4 11  888           3  66666     9   66   888    888   11   4    4    22   1      4 4444444444       4444444  2    9999  8 4 333333  000    4   0      0000000      0      22 99   4      11  5   2222222     00 4444  77 7    6 4    7 7 7     7  000 7   7  5     22      0    333333333                     22 0    7 777  22      22       7  777  77777   8 0  88888888888888           44        0   4444444     0000000000000000000000000000000000000000000000              0  
consensus                     :                                                                                                                                                                                                                        ACAGCTAACACTG--TA---A--TA--CT--G-C-----CATACCCAGTGTCT-GTGGTGGC-GGTG-AGTCGCGGNTCA-T--CA---AG-CA------GT-GGTTT-GACTGG---AGGAGACGA-------TACAGCTTCTG--GTGACTTCA--T---TGCCT---CG----CCATGTTC------TGTGTTAAT---G-GATAA-T-GATGA-CA-GAGAACCAAA-C--------ATT-TCATTN-AGCTGAT-C-----T-TTGTT----TATTTTCCGAGG-A-GAAAA--A-CTT---GGCAAT-TTTAACTCG----GACT------TTNGGC-GGTAATG-TT-CTAAA-----CTCGGA-AT---TC---CTAGATT-TGTAAGT---A----GAGG----TTAAG-GA-GACATCATTTG-AT-T-TTAGTATTGCT-TTCAAG---TCGGNAATG--A-TCTGTTT-GA-G--TTC--GGT---TATTTTCTG-TGC-GA-TTTC-T---T--CTGTGTTTT------TAT-C--CAGG-GT----AG---ATAGG-T--T--GTTT-TGTTTTTCATTTC-------CTGAA-TG---TCAGATT-TCCGTCGGTTG-ACAA-TGGGC--GGTG--ACC-TCT---CG-----GTGTAA--G-ATTTCT--CC-----TTGTT-GGTC-GG---CGGTCTG-TTGTT-AGTTT--CCCGT-----ACTT-----CGTTTCT-A-ACTCGG----CTT-TC-TCA-GTTTGGACATC-G--GAC------GCCATT-T-CTTCATA--T-CGGGGATAA---ATTCT----G-GTCT-CT---AG-TTCT--------T-CCAAATCTTTTTG---TAA-GCTTT-----TGTTGT--TT-A---GCGCCGAG-T-TTT---CCAG-AATATCNG-A-TAT--ATCG-TGACCTTC-GTG---TTC------ACC-CGAGG-A-A--CGCA---GGTA-ATACAGACAG-------GAATG--TCGC-A--TT---TCTCGCAGTAAAGT-----TCGCAGTGT--TTT---TCGG---CGT--GTT-TCGG-ACAT--TTCGGGTAGT-TG---------GGAGTAG-------ACTTTCTC---TGTA-A-AT---AGT--GCAC-GACNTTGTGT----CG-TTTAGA-CGAATC-CG--AGAGGTGTTTC-CCTACG-------CAGTTAGC---GCA-NA-GACTTATGTTA-C-A-AAGTT-CA---C-AAT-GACTCTGT--AGGGGGACAGT---TT----CACAGAGGTCACACAGGAGGA--CNTCCT-G---AG--CACTGC--GCCGGGG-GT---GC-----ATTTC-TGT-CG--CCGG----GGTCACACGAGNAGTTTACTG-TCA---AT--AAGAA-------------AT----TTTGA--CA-GAT-AAAAA-AA---CCAAACTAAAATTACANTA
Reference ( family-271 )      :                                                                                                                                                                                                                        ACAGCTAACACTG--TA---A--TA--CT--G-C-----CATACCCAGTGTCT-GTGGTGGC-GGTG-AGTCGCGGNTCA-T--CA---AG-CA------GT-GGTTT-GACTGG---AGGAGACGA-------TACAGCTTCTG--GTGACTTCA--T---TGCCT---CG----CCATGTTC------TGTGTTAAT---G-GATAA-T-GATGA-CA-GAGAACCAAA-C--------ATT-TCATTN-AGCTGAT-C-----T-TTGTT----TATTTTCCGAGG-A-GAAAA--A-CTT---GGCAAT-TTTAACTCG----GACT------TTNGGC-GGTAATG-TT-CTAAA-----CTCGGA-AT---TC---CTAGATT-TGTAAGT---A----GAGG----TTAAG-GA-GACATCATTTG-AT-T-TTAGTATTGCT-TTCAAG---TCGGNAATG--A-TCTGTTT-GA-G--TTC--GGT---TATTTTCTG-TGC-GA-TTTC-T---T--CTGTGTTTT------TAT-C--CAGG-GT----AG---ATAGG-T--T--GTTT-TGTTTTTCATTTC-------CTGAA-TG---TCAGATT-TCCGTCGGTTG-ACAA-TGGGC--GGTG--ACC-TCT---CG-----GTGTAA--G-ATTTCT--CC-----TTGTT-GGTC-GG---CGGTCTG-TTGTT-AGTTT--CCCGT-----ACTT-----CGTTTCT-A-ACTCGG----CTT-TC-TCA-GTTTGGACATC-G--GAC------GCCATT-T-CTTCATA--T-CGGGGATAA---ATTCT----G-GTCT-CT---AG-TTCT--------T-CCAAATCTTTTTG---TAA-GCTTT-----TGTTGT--TT-A---GCGCCGAG-T-TTT---CCAG-AATATCNG-A-TAT--ATCG-TGACCTTC-GTG---TTC------ACC-TGAGG-A-A--CGCA---GGTA-ATACAGACAG-------GAATG--TCGC-A--TT---TCTCGCAGTAAAGT-----TCGCAGTGT--TTT---TCGG---CGT--GTT-TCGG-ACAT--TTCGGGTAGT-TG---------GGAGTAG-------ACTTTCTC---TGTA-A-AT---AGT--GCAC-GACNTTGTGT----CG-TTTAGA-CGAATC-CG--AGAGGTGTTTC-CCTACG-------CAGTTAGC---GCA-NA-GACTTACGTTA-C-A-AAGTT-CA---C-AAT-GACTCTGT--AGGGGGNCAGT---TT----CACAGAGGTCACACAGGAGGA--CNTCCT-G---AG--CACTGC--GCCGGGG-GT---GC-----ATTTC-TGT-CG--CCGG----GGTCACACGAGNAGTTTACTG-TCA---AT--AAGAA-------------AT----TTTGA--CA-GAT-AAAAA-AA---CCAAACTAAAATTACANTA
gi|1                          :                                                                                                                                                                                                                        ACAGCTAACACTG--TG-----------T--G-CAAATTCATACCCAGTGTCT-GTGGTGGC-AGTG-AGTCGCGGTTCA-T--CA---AG-CA------GT-GGTTT-CACAAA---AGGGGACGA-------TACAGCTTCTG--GTAATTTAA--T---TGTCT---TG----CCATGTTC------TTTGTTGAT---G-GATAA-T-GGTGA-CA-AAGAGCCAAA-T--------ACT-TCTTTA-AGTTGATACATGTAT-TTGCT----TAT---------------AA--A-CTC---GGTAAT-GTCA-CTCG----GACT------TTCGAC-GGTAATG-TT-CTAAA-----CACGAA-AT---TC---CTAGATT-TGTAGGC---A----GAAG----TTAAG-GA-TATATCATTTG-AT-T-TTAAAATTGAT-TTCAAG---TCAGAAATG--G-TCTGTTT-AA-G--TTT--CGC---TATTCTCTG-TGT-GA-TTTC-C---A--CTTCATTTG------TGT-T--CAGG-GT----AG---ATAGG-T-----GTTT--GTTTTTCATTTC-------CCCAA-TT---TCAGATT-TCCGTTGGTTG-ACAA-TGG-C--GGTG--ATC-TCT---TG-----GTGTAA--G-ACTTTT--CC-----TTGTT-GGTC-GG---CGG-CTG-TTGTT-AGCTT--CTCGT-----ACTT-----TGTTTCT-A-ACTCGT----CTT-TC-TCA-GTTTGGATATC-G--AAG------GCCATT-T-TTTCATG--T-TGGGGATAA---ATTCT----C-GCCT-CC---AG-TTCT--------T-CAAAATCTTTTTG---GAA---TTT-----TTTTGT--TTTA---GCACTGAGGT-TTT---CCAG-AATATCGG-A-TAT--ATCG-TGGCCTTT-GTG---TGT------ACC-TGACA-AGA--CGCA---GGTA-ATACAAACAG-------GAGTG--TCAC-A--TT---TCTCACAGTGATAT-----TCGCATTGG--TTT---TCGG---CGT--GTT-TCGG-ACAA--TTCGGGTAAA-TA---------GGAGTAT-------AAATTCTC---TGGG-A-AT---AGT--GCAC-AACTTTATGG----TG-TTTAGA-CGAATC-CG--ATATGTGTTTT-CCTACG-------CAGTTAAC---ACA-AA-TATTTATGTTA-C-A-AAGTT-CA---C-AAT-AACTATCT--AGGGGGACAGT---GT----CACAGAGATCACACAGGAGGAACTTTCCT-GGGAAG--CACTGC--GCCGGGG-AT---GTCTCCGATTTC-TGTACGCTCCGGCTCCCGTTACACAAGATGTTCACTG-TTATTTAA--AAAAA-------------AT----CTCAAACCA-AAT-AGA----------AAACTAAAATTACAGTA
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ACAGATAG-------GAATT--TTAC-A--GT---TATCACAATAATGT-----TCACAATCC--TTG---TCAG---CGT--GTT-TAGA-ACAG--CTAGAGTATT-TGTAGTTTTTAGAAGTAA-------ATTTTTTA---TGCA-G-GTTGTAGC--GGAC-GACTTTGTGTTTATCG-TC-AGA-AGAG----G--AAAGGTGTTTG-CTTACA-------CAGTCGGT---GCA-TA-AACTGACGTCA-C-A-CTGTT-CACAGC-AATAGA----GA--AGTGGGTTAGT---CC----CACAAAGGCCACACAATAAGA--CGTCCT-G---GG--CA--------CGTGG-GT---CC-----ATGTCTTGT-CT--CAAG----GGTCACACGGGTAGTTTACTG-TCA---ATAAAAGAA-------------ATGAACTTTAA--TATGATAAAAAA-AA---CCAAattgctatatatggaactccccttttctcagaatcatatatgtaattgatatcaaattgtacattatctatgacacggtgcaatgtcagaatccgtttatataattttgtctcacctaaaatccatgtaatgtgactctttaatcaagccccgtgatgaaataccagttcgtgagcggcacag
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                -----CGTTGTG-A-ACTCGG----CAA-TC-TCA-GTTTGGACACT-GAAGACATTGAGGACACT-CGCTTCATA--T-CGGGGGTGT---ATTCT----T-GTCT-CT---AG-TTCTCTAGTTTGT-CCATATCTTTCTG---AAT-GCTTTGCGTTTGATAT--TT---------CATA-T-TTT---GCAG-GACCTCTT-A-TAG--ATAG-AATCCTTT-GTG---TTT------ACC-TGAGG-A-------------------TAGACAG-------GAATG--TCAC-A--TT---CCTGACAGTAAAGT-----TCGCAGTGT--TTG---TCGA---CAT--GTT-TCGG-ACAT--TTGGGATTAT-T------------AGCAG-------ACTTTTCG---TATT-A-CC---GGT----AC-GACCTTGTGT----CT-TTTAtatggta
gi|12                         :                                                                                                                                                                                                                                                                                                                                                                                                    ----CCATGTTC------TGTGTTGAG---G-GATAA-T-GGTGA-TA-GAGAACCAAA-C-------------CATTAGAGCTGTT-C-----T-TTGTT----TATTT--CGAGG-A-GAAAA--AATTT---GGCACTGTTT--CTCG-------T------TTAGGCCGGCAATGATT-CTAAA-----TTCAGA-AT---TC---CTAGATT-TGTAAGT---A----GAGT----TTAAG-GA-AACTTCATTTG-AT-T-TTAGAATCGAT-TTCAAG---TTGGTAATG--A-TCTGTTT-TA-G--TTC--ACT---AATTTTCTG-TGT-GA-TTTC-T---T--GAGCGTTTT------TAT-C--CAGG-
gi|15                         :                                                                                                                                                                                                                      ctACAGCTAACACCG--TA---AAGTA--A---G-T-----CATACCAAGTGTGT-ATGGTGGC-GGTG-AATCGCGGCTCA-T--CA---CG-CA------GT-GGTTT-GACTGG---ATGAGATGA-------TACAGCTTCtt
gi|17                         :                                                                                                                                                                                                                        ACAGCTAACACTG--TA------TA--GTTGG-T-----CATACCCAGTGTCT-GTGGTGGC-TGTG-AGTCGCGGGTCA-T--CA---AG-CA------GT-GGTTT-G
gi|18                         :                                                                                                                                                                                                                        ACAGCGAAGGCTG--TATAGA--TA--T-----C-----TATACC-AGTGTCT-ATGGTTGC-GGTGCAATCGCGGTTCA-T--C----AG-CA------GT-G
gi|2                          :                                                                                                                                                                                                                       gACAGCTAACACTG---A---A--TAGTCT--G-T-----CATACCCAGTGTCT-GTGGTGGC-GGTG-AATCGCGGTTCA-T--CG---AG-TA------AT-GGTTT-GACTGG---AGGAGATGA-------TACGGCTTC
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                                                                         gTCAAT---T-GATAA-T-GACGA-CA-GACAACCAAA-C--------ATT-TTATTG-AGCTGAT-C-----T-TTGTT----TATTTTCTGAGG-A-GAAAA--A-CTT---GGCA-C-TGTAACTCG----GACT------TTAGGA-GGTAATG-TT-TTAAA-----CTCGGA-AT---TC---CTAGATT-TGTAAGT---A----GAGG----TTAAG-GA-GACATCATTGG-AT-T-TTAGTATTGAT-TTCAAG---TCGGCAATG--C-TCTGTTT-GA-T--TTC--TGT---AATTTTCCG-AGT-GA-TTTC-T---T--CCATGTTTT------TAT-C--CAGG-GT----AA---ATAGG-T-----GTTT--GTTTTTCATGTC-------CTGAA-TG---GAAGATT-TCCGCTGGTCG-ACAA-TGG-C--AGTG--ATT-TCT---CG-----GTGTAA--G-ATTTCT--CC-----TTGTT-GGTC-GG---CGG-CTG-TTGTT-AATTT--CGCGA-----AATT-----CGTTTCT-A-GTTCGG----CTT-TC-TCT-GTCTGGACATC-G--GAC------GCCATT-T-CCTCATA--T-CGCGGATAA---ATCCT----G-TTTT-GT---AA-TTCT--------T-CTAAATCTTTTTG---TAA-ACTCTC----TGTT----TT-A---GCGCTGAG-T-T---------------CTG-A-TAT--ATCG-TGACCTTT-GTG---TTT------TCC--AAAT-A-ATGCGCA---GGTA-GAACAGACAG-------GAACA--TCAC-A--TG---TTTCGCAATAAAGT-----TTGCAAT-----CT---TCGGTTGCGT--GTT-GCGG-ACAT--TTTGCGTAGT-TA---------GGAGTGG-------ATATTCGG---TGTATA-AA---AG---AAAC-GACATTGTGC----TT-TTTAGA-GAAATC-CG--AGAGGTGTTCC-CCAACA-------CAG---GCCTTGCA-TA-GACTGACATTA-C-A-AAGTT-CA---C-AAT-GACTCTGT--AGGGGGGCAGT---CT----CACAGAGGTCACACCGCAGGA--CGTCCT-G---GG--CACTGC--GCCGGGG-GTGCAGC-----ATTTC-TGA-TG--TCGG----GGTCACACGAGAAGTTTACTG-TCA---AT--AAAAAGGGAACCTTAGATAT----GTTGA--C---AT-AATGA-GA---TTAAAATAAAATaattgataatgacgacagacaaccaaacattttattgagctgatctttgtttattttctgaggagaaaaacttggcactgtaactcggactttaggaggtaatgttttaaactcggaattcctagatttgtaagtagaggttaaggagacatcattggattttagtattgatttcaagtcggcaatgctctgtttgatttctgtaattttccgagtgatttcttccatgtttttatccagggtaaataggtgtttgtttttcatgtcctgaatggaagatttccgctggtcgacaatggcagtgatttctcggtgtaagatttctccttgttggtcggcggctgttgttaatttcgcgaaattcgtttctagttcggctttctctgtctggacatcggacgccatttcctcatatcgcggataaatcctgttttgtaattcttctaaatctttttgtaaactctctgttttagcgctgagttctgatatatcgtgacctttgtgttttccaaataatgcgcaggtagaacagacaggaacatcacatgtttcgcaataaagtttgcaatcttcggttgcgtgttgcggacattttgcgtagttaggagtggatattcggtgtataaaagaaacgacattgtgctttttagagaaatccgagaggtgttccccaacacaggccttgcatagactgacattacaaagttcacaatgactctgtaggggggcagtctcacagaggtcacaccgcaggacgtcctgggcactgcgccgggggtgcagcatttctgatgtcggggtcacacgagaagtttactgtcaataaaaagggaaccttagatatgttgacataatgagattaaaataaaatggaaattcaacacatcaatataactttaatttcaccaaactctcaaaatgaaatgaaatctgtctcattgattacataaatatcgatattaatgacactacaaagtcaaaacatgcgtatataattttgtcttactagaaaattcaacatggcctccctgttctgtcgaccttcctccagtctggtcctataaataaatacttgtgcggcga
gi|3                          :                                                                                                                                                                             gacagctaacactgaatagtctgtcatacccagtgtctgtggtggcggtgaatcgcggttcatcgagtaatggtttgactggaggagatgatacggctTGGTCG--GGTGTAGTCGCGGGGCA-TATCATATAG-TAATATATGT-TATTTAGACTGG---AAGAGGTGAATTTGATTACAGCTTGTG--G-GACTTCA--T----GTCTACACGAGAACC-TGTTC------TGTTTAAATCCCA-GATAA-T-GATGACCATGGTAACCAAATC--------ATT-Tggaaattcaacacatcaatataactttaatttcaccaaactctcaaaatgaaatgaaatctgtctcattgattacataaatatcgatattaatgacactacaaagtcaaaacatgcgtatataattttgtcttactagaaaattcaacatggcctccctgttctgtcgaccttcctccagtctggtcctataaataaatacttgtgcggcga
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                              cggcgtaactgga-C-----T-TTGTTGG--TATTTTCCCAGGTA-GAAAA--A-AATACGGGCAGA-TGTAAATCG----CACTCTATATTTAAGC-GGTAATG-AT-CCAGAAGCGGCGCGGA-TA---TC---TAAGATTGTATAGTT---ATCGCAAGGAATATTAAG-GAAGAC-TCATTTGTGTAT-TTAGTAATTCG-TTCAAG---TCGGCAATGGAA-TCTTGTT-GA-GGCTTCCCGCT---TCTTTTCTGATGT-GAATTTC-G---TGGTTGTATTTTATAAAATAC-CAACGGG-TT----AG---ATAGGGTGGT--GTTT-GGTTTTCCATTTTACA----CTGAAATAAAATCAGACTATC--TCGTTAG-ACAAATGAGCAGGGTGGGACGGTCTATACGAAGGGGTGTGAAGG-ATTTTT--TCCTTTTTTGTTTGGTCCGG---CA-TCT--TTGTTTATTTT--TGCGTTACCCACTTTTCCTC-TTTCTCA-ACTGGGGATTTTTATT-TCAAGTTTG-ATTTCTG--GAC------GCCATTGT-CTGCATA--TTCGTGGGGAA---ATTCTCAATGTGTTT-CTTAAAT-TTCT--------T-CCAGCTCGTTTTG---TAATGCTTG-----TGTTGTGTCT-ACCTGTGCTGAG-T-TTTTCACCAGTAATATTGG-AATATT-ATCG-TGACCTTT-GTGATTTTCACGTCAACC-CGAGT-G-C--CGCAATCGTTA-TTAC-GACAGTTTCTAAGAGTA--ACGCAA--TTGTATCTCGCTG-AGGGTTGTAGTAGCAGCGTAAATT---TCGG---CGTTCGTTCTCGGTACATTCTTC-GGTAGTATG---------GGA--AGTTTTTTTTTTTTCTCTCGTGTA-ATAT---AATG-GCACGGACTTTATGTTC--TT-TTTGGACCGAATC-TGATAGAGATGTTTTACTTACATAATATTCAGTTACC---ACA-AATGACTT-TATTAGT-ACAAGTCACA---CTAAT-GAGTCTGTAAAGGGGGACGATAAATTATCACACAGAGGTCACACATGGGGA--CAACCTAG---AGTTCACTGCCTGCGGGGGAGT---GC-----ATTtctaggtggggtgcagaaagggaaaggggggagggaactgagtgaggctttgttggtattttcccaggtagaaaaaaatacgggcagatgtaaatcgcactctatatttaagcggtaatgatccagaagcggcgcggatatctaagattgtatagttatcgcaaggaatattaaggaagactcatttgtgtatttagtaattcgttcaagtcggcaatggaatcttgttgaggcttcccgcttcttttctgatgtgaatttcgtggttgtattttataaaataccaacgggttagatagggtggtgtttggttttccattttacactgaaataaaatcagactatctcgttagacaaatgagcagggtgggacggtctatacgaaggggtgtgaaggattttttccttttttgtttggtccggcatctttgtttatttttgcgttacccacttttcctctttctcaactggggatttttatttcaagtttgatttctggacgccattgtctgcatattcgtggggaaattctcaatgtgtttcttaaatttcttccagctcgttttgtaatgcttgtgttgtgtctacctgtgctgagtttttcaccagtaatattggaatattatcgtgacctttgtgattttcacgtcaacccgagtgccgcaatcgttattacgacagtttctaagagtaacgcaattgtatctcgctgagggttgtagtagcagcgtaaatttcggcgttcgttctcggtacattcttcggtagtatgggaagttttttttttttctctcgtgtaatataatggcacggactttatgttctttttggaccgaatctgatagagatgttttacttacataatattcagttaccacaaatgactttattagtacaagtcacactaatgagtctgtaaagggggacgataaattatcacacagaggtcacacatggggacaacctagagttcactgcctgcgggggagtgcatt
gi|4                          : cggcgtaactggatggtcgggtgtagtcgcggggcatatcatatagtaatatatgttatttagactggaagaggtgaatttgattacagcttgtgggacttcatgtctacacgagaacctgttctgtttaaatcccagataatgatgaccatggtaaccaaatcattttctaggtggggtgcagaaagggaaaggggggagggaactgagtgaggACAGCTA-CATTG--TA---A--CA--CT--G-C-----CATACCCATTGTCT-GTGGTGGC-GGTG-AGTCCTGGATCA-T--CA---AG-CA------AT-GATTC-GACTGG---AGGAGACGA-------TATAGCTTCTG--GTGATTTTA--T---TGCCT---CG----CCATGTTC------TGTGT-AAT---G-GATAAAT-GATGA-CA-GAGAGCCAAG-C--------ATT-TCATTC-AGCTTAT-C-----T-TTGTT----TATTTTCTTAGG-A-GAATA--A-TTT---GGCAAT-TTTAACTCG----GACT------TTCGGT-GGTAATG-TT-CTGAA-----CTCGGA--T---TC---CTAGGTT-TGTAAGT---A----GAGA----TTAAG-GA-GACATCTTTTG-AT-T-TCAGTATTGCT-TTCAAG---TCCGAAATG--A-TCTGATT-GA----TTC--GGT---TATTTTCTG-TGC-GA-TTTC-T---T--CTGTATTCT------TAT-C---AGG-GT----AG---ATAGG-T--T--GTTT-TGTTTTTCATTTC-------CTGAA-TG---TCGGATT-TCCGTCGGTTG-ACAA-TG--C--GGTG--ACC-TCT---CG-----GTGTAA--G-ATTTCT--CC-----ATGGT-GGTC-GA---CAATCTT-TTGAT-AATTT--CCCGT-----A-TT-----CGTTTCT-A-ACTCGG----CTT-TC-TCT-GTTCGGATATT-G--GAC------GCCATT-T-CTTTATA--T-CGGGGGGAA---ATTTT----G-GTCT-CT---AA-TTCC--------T-TCAAATCTTTTTG---TAA-ACTTT-----TGTTGT--TT-A---GCGCTGAG-T-TTT---CCAG-AATATCCG-A-TAA--CTTG-TGACCTTC-ATG---TTT------ACC--GATG-A-A--CGCA---CGTA-ATACAGACAG-------GAATG--TCAC-A--AT---TCTCGCAGTAAAGT-----TCGCAGTGT--TTT---TCGG---TGT--GTT-TCGT-ACAT--TTCGGGTAGT-TG---------GGAGTAG-------ACTCTCTC---TGTA-A-AT---AGT--GCAC-GACATTGTGT----CG-TTTAGA-CGAATC-CG--AGATGTGTTTC-ACTGCG-------CAGTTAAC---ACA-GA-GATTTATATGA-C-A-AAGTT-CA---C-AAT-GACTCTGT--AGGGGGGCAGT---TT----CACAGATGTCACAAAGGAGGA--CTTCCT-G---AG--CACTGC--GCCGGGA-AT---GC-----ATTTC-TGT-TG--CCGG----GATGACACCAGCAGTTTACTG-TCA---AT--AAGAT-------------AT----TTTGA--CA-GAT-AAAAACAATGTCCAAGCTAGAATTACATTA
gi|5                          :                                                                                                                                                                                                                        ACAGAGAACACTGCTTA---G--TT--C---G-T-----TATATTCAGTGTCT-GTGATGGC-AGTG-AGTCGCGGGTCA-T--CA---AG-CA------GT-GGTTT-GACTATTATAGGAGATGA-------TACAGCTTCTG--GCAACTTCA--TAATTGCCT---CG----CCATGTTC------TGTGTTAAT---G-GATAG-T-GATGA-CA-GAGAACCAAA-C--------ATT-CCATTC-AGCTGAT-C-----T-TTGTT----TACTTTCCGAGG-A-GAAAA--A-CAT---GGTAAT-GT-AACTTG----GACT------TTTGGA-GGTAAGG-TT-CTAAT-----TTCAGA-AT---TC---CTAGATT-TGTAGGT---A----GAGG----TTAAC-GA-GGCATCATTTG-AT-T-TTAGTATTGCT-TTCAAG---TCCAAAATA--A-TTTGTTT-CA-G--TTC--AGT-----------------AA-TTTC-T---T--CTGTATTTT------TGT-T--CAGG-GT----AG---ATACA-TG-TAAGTGTATGTTTTTCATTTC-------CTGAA-TT---TCAGATT-TTCTGCTATTG-ACAA-TGG-C--GGTG--ATC-TCT---TG-----GTGTAA--G-ATTTCT--CC-----TTGTT-GGTC-GG---CGG-CTG-ATAAT-AGTTT--CTCGT-----ACTT-----CGTGTCT-A-ACTCGT----TTT-TC-TCA-ATTTGGATATC-G--GAC------GCCATT-C-TTTCAAA--G-TTAGGATAA---ACTCT----T-GTCT-CT---AG-TTTT--------TTCCAAATCTTTTTG---TAA-AATTTC----TGTT----TT-A---GCGCTGAGGC-TTT---CCAG-AAATTCTG-A-TAT--ATCG-TGACCTTT-GTG---TTG------ACC-CGAGGTG-A--CGCA---GGTA-ATGCAGACAG-------GAACG--TCGC-A--TT---TTTCGCAGTGAAGT-----TCACATTGC--TTT---TCGG---CGT--GTT-TCGG-ACAT--TTCGGGTAGT-TT---------GGAGTAG-------CCTTTCTC---TGTA-A-AT---AGG--GCAC-GACATTATGT----CG-TTTAGA-TGGATC-CG--AGATGTGTTTT-CCTACG-------CAGTTAAC---ACA-GA-GGTTTATGTTA-C-A-AAGTT-CA---C-AAT-GACTCTGT--AGGAGGACAGT---TT----CACAGAGGTCACACAGGAGGA--CTTCCT-G---AG--CACTGC--GCCGGGG-AT---GC-----ATT---------------------TCACATGTGTTGTATACTGTTTA---TT--AAGAA-------------At
gi|6                          :                                                                                                                                                                                                                           GCTAACAGCG--TA---G--TC--CTC-GTC-----CATAGCCAGTGGCTTATGGTTGCAGGTG-AATCGCGCTTCGGT--CC---AGACA------ATTGGTTG-GACTTG-----GAGAT---------------TTCTGCGATGACTTCACTT---TGCGC---CG----C-ATGTTCGTTCTCTGTGTTTAT---GAGATAA-TCGATGA-AAAGGGAACCAAA-C--------ATTGTCACGG-AG-TGCT-C-----TCTTGG------ATTTTCGGAGG-ACGACAATCA-CTT---GGTAAT-GT-AA-TCGA---GACC------TTTGTA-GGCAATC-TTTCGGAA-----TTCGGTTAT---TC---CTAGATT-TGTAACT---A----AATG------AGA-GA-GAAATCATTGG-AT-TCTTAATATTGCC-TTCAAGGTTTC--ATATG--ACTTTGTTTTGA-G--TTC--AGTA--TATCTT--G-TGCTGG-TTTCAT---T--CTATGTTTT------TATTC--CAAATGC----AGCCGATAG-----T--GTTT-AGATTT-CATCTC-------CGCGA-TG---TCAGTTT-GCCGTTGTTTTTACAA-TGG-C--AGTG--ACC-TCT---CG-----GTGTAA--GTATTTCTTGCT-----TTGT---GTC-AA----GATTCGCTTGTT-AATTTTGCTCAT-----ACTT-----TGCTTGG-A-AACCGG----CTT-TCCTCA-GTTTTGACATT-C--GAT------GTCATT-T-CTTCATA--T-CGTGGACGT---ATTTT----G-A-CT-CT---AG-TTCC--------T-CCAAATTCTTTTGCACTAA-GGCTG-----TGTT-T--TT-A---GATCCGAG-TGTTT---TCAG-AACATCGGCA-TACAAATTGTTGGCCCTCTATGA--CTC------ATCGGGAGG-A-C--CGCA---GGTAGAAACA-ACA--------GAATGTTTCGC-AATTT---TCTCGCAGTAAAGTG----TCACAGTGTG-TTTTTGTCGC---CAT--GTT-CCGG-ACATGATGC-GGTAAT-AG---------GG-GT-G-------AC-TTCTT---TG---A-GT---AATGGGCAC-GACCTTGTGT----TATTTTAGA-CGAATCGTG--AGAGGTGTTAT-GCGACA-------CAATT-GC---ACATTA-GACTAATATGA-CAA-AAGTT-CG---C-gaaagaaaatattaattaatgatatcaacaggttgaaagaaat
gi|7                          :                                                                                                                                                                                                                                                                                                                               gacTT-GACTGG---AGGAGATGA-------TACAGCTTCTG--GGAACTTCA--T---TGTCT---CC----TCATGTTC------TGTGTTAAT---G-GATAA-T-GGTGA-TA-GAGAACCAAA-C--------ATT-TCATTC-AGCTTAT-C-----T-TTGTT----TATTTTCCCACG-A-GAAAA--A-CTT---GGTAAT-GT-AACTCG----GACT------TTAGGC-GGCAATG-TT-CTAAA-----TTCGGA-AT---TC---CTAGATT-TGTACGT---C----GAGG----TTAAG-GA-GATATCATTTG-AT-T-TTAGTATTGAT-TTCAAG---CCGGCAATG--A-TTTGTTT-GA-G--TTC--CCT---AATTTTCTG-TGT-GA-TTTC-T---T--CTGTGTTTT------TAT-C--CAAG-GT----AG---ATAAG----T--G-TT-TGTTTTTCATTCC-------CTGAA-TG---TCAGATT-TCCGCTTGTTG-ACGA-T-GGC--GGTG--ATC-TCT---CG-----ATGTAA--G-ATTTCT--CC-----TTGTT-GGTC-GG---CGG-CTG-TTGTC-AGTTT--CCCGT-----AGTT-----CGTTTCT-G-TATCGG----CCT-TC-TCA-GATTGGACATT-G--AAC------GCCAGT-T-CTTCATA--C-CGGGGATAA---ATTCT----G-GTCT-CT---AG-CTCT--------T-CCAGATCTTTTTG---T-A-GCCTT-----T-CTGTA-TT-A---GCGCCGAGTT-TTT---CCAG-AATATCTG-A-TAT--ATCG-TGACCTTT-GTG---TTC------ACC-TGAGG-AGA--CGCA---GGTA-ATACAGATAG-------GAATG--TCAC-A--TT---TCTCACAGTAATGT-----TTACAATGT--TTA---TCAG---AGT--GTT-TCGG-ACAT--ATTGTGTAGT-TA---------GGAGTAG-------ACTCTCTC---TGTA-G-GA---AGG--GCAC-GACTTTGTGT----CT-TTTAGA-CGAATC-GG--ATAAGTGCTCC-CCAACA-------CAGtaaacatcttgcagccaagtgtccgatttcacttagatgacagtaagcgatagaacttcgct
gi|8                          :                                                                                                                                                                                                                        ACAGCTA-CA-TG--TA---A--CA--CT--G-C-----CATACCCATTGTCT-GTGGTGGC-GGTG-AGTCCTGGATCA-T--CA---AG-CA------AT-GATTC-GACTGG---AGGAGACGA-------TATAGCTTCTG--GTGATTTTA--T---TGCCT---CG----CCATGTTC------TGTGTTAAT---G-GATAA-T-GATGA-CA-GAGAGCCAAG-C--------ATT-TCATTC-AGCTGAT-C-----T-TTGTT----TATTTTCTTAGG-A-GAATA--A-TTT---GGCAA--TTTAACTCG----GACT------TTCGGT-GGTAATG-TT-CTGAA-----CTCGGA-AT---TC---CTAGGTT-TGTAAGT---A----GAGA----TTAAG-GA-GACATCTTTTG-AT-T-TCAGTATTGCT-TTCAAG---TCCGAAATG--A-TCTGATT-GA-G--TTC--GGT---TATTTTCTG-TGC-GA-TTTC-T---T--CTGTATTCT------TAT-T--CAGG-GT----AG---ATAGG----T--G-TT-TGTTTTTCATTTC-------CTGAA-TG---TCGGATT-TCCGTCGGTTG-ACAA-T-GGC--GGTG--ACC-TCT---CG-----GTGTAA--G-ATTTCT--CC-----ATGGT-GGTC-GA---C-ATCTT-TTGAT-AATTT--CCCGT-----ATTT-----CGTTTCT-A-ACTCGG----CTT-TC-TCT-GTTCGGATATT-G--GAC------GCCATT-T-CTTTATA--T-CGGGGGGAA---ATTTT----G-GTCT-CT---AA-TTCC--------T-TCAAATCTTTTTG---Tgcctt
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                           TAAT---G-GGTAA-C-GATGA-GA-GAGATCCAAA-CCACAGAGAATT-CGAAAT-AACTGAT---------TTGTCGGCATAGACTTCGGTG-A-GAAGG-----CT---GGTAA-----AGC-CGCAGTGATT------TTAGGA-GG-AATC-TT--TAA---------GAG-ATGTGTCAGGCTTGGTT-TG--AGTTGGA----GGGA----CT--GTGA-GATGTCATTAG-AT-C-CCAGGAT-GTTATTGATG---TCTGTAATG-------GCTT-GGTG--CAC--GGTATCTATCAGCTG-CTC-TA-TTTC-TGTTT--CAGT-CTTT------CAC-T--CAGG-ACCTTGAG---GT--G-T--T--G-----GGTTTTCATTTCATGTACTCTGAA-TT---TCAGATT--------ATTG-ACAA--GGAT--ATTA--ATT-GCA---TT-----GTGTCA--G-TCTTCT--CC-----ACGTT----C-AGAAATGG-CTG-TTGTC-AGTTT--GCTAT-----ATTC-----TGTATCA-AGATTC-G----CTA-TC-TCT-GTTTTAACTTC-A--GAT------GCAGTT-T-TGTCATATTT-TGGACATAACACGTTTTCAA-G-GTTTACC---AGATTTT--------T-TCAAATTTCTTnnnnnnnnnnnnnnnnnnnnnnnnngtatgcgtttcacttcacaacggtcatacaa