lowQualScore : 4 666666666666666 33333333333333333333 2222 6666 1111 22222 6666666666666666666666666666666 2 1111
lowQualScore : 0 222222222222222 44444444444444444444 3 7777 2222 3 0000 3 2 0000 55 2 66 2 8 33 2 2 55555 33 33 4444444444444444444444444444444 6666 3 3 0 44 0 44 2 4 4 3 666 2 4444 4 777 55 5 5 5 77
lowQualScore : . ............... .................... . .... .... . .... . . .... .. . .. . . .. . . ..... .. .. ............................... .... . . . .. . .. . . . . ... . .... . ... .. . . . ..
lowQualScore : 0 333333333333333 44444444444444444444 6 7777 7777 6 8888 1 9 0000 22 9 88 9 6 99 9 9 77777 11 44 5555555555555555555555555555555 3333 1 1 5 22 4 66 2 0 0 7 444 1 7777 4 888 11 0 0 0 99
consensus : GATACCTTTC-CATACTATGTAAAAAAAA----------TTAACAAGCTTTCGGGCTTCAGAATGACGTAACAAGA-G-A----------------AA-CGCGG----GAAA-AN-ATAGC-AA----CCGGT-AAATAG-T----TT-TCA-GAC--T-ATTT-CC--CTAG-G-GC----A--AATAGT--TTCCA-GA---CTATT-TCCCTA--GGCAAA-TAGTTCACA--A-ACTATT-TCACG--AGTAGCG--TTATCCAGAGGAAATA-G-CAAATTT---ATTCA-C-CTA-ACAT---TTA-T-AC-AGTAA-AAA--CAGTCTGAGGTATAAT
Reference ( gi|4 ) : GATACCTTTCACATACTATGTAAAAAAAA----------TTAA-AAGCTTTCGGGCTTCAGAATGACGTAACAAGA-G-A----------------AA-CGCGG----GAAA-TA-ATAGC-AATTTTCCGGT-AAATAG-T----TT-TCA-GAC--T-ATTT-CC--CTAG-G-GCA---A--AATAGT--TTTCA-GA---C-ATT-TCCCTAT-GGCAAATTAGTTCACA--A-ACTATT-TCATG--AGTAGCG--TTATTCAGGGGAAATA-G-CAATTTT---ATTCA-C-GTA-ACAT---TTA-T-AT-AGTAA-AAA--CAGTCTGAGGTATAAT
gi|8 : GATACCTTTC-CATACTATGTAAAAAAAA----------TTAACAAGCTTTCGGGCTTCAGAATGACGT-ACAAGAGG-A----------------AA-C-CGGAGGAGAAA-TATATAGC-AA-TTTCCAGT-AAATAG-TATAGTT-TCA-GATA-C-ATTT-CTCACTA--G-GC----A--AATAGTGATTTCA-GA---CTATT-----TATAGGCAAA-TAGTTCACA--A-ACTATT-TCATG--AGTAGCG--TTATTCAGGGGAA
gi|12 : aaagttaaaccaagaaaGATACCTTTC-CATACTATGTAAAAAAAA----------TTAACAAGCTTTCGGGCTTCAGAATGACGTAACAAGA-G-A----------------AA-CGCGG----GAAA-AT-ATAGC-AATTTTCCGGT-AAATAG-T----TT-TCA-GAC--T-ATTT-CC--CTAG-G-GCA---A--
gi|3 : caaagttaaaccaagaaaGATACCTTTC-CATAACATGTAAAAAAAAAAAAAAAAAATTAACAAGCTTTCGGGCTTCAGAATGACGTAACAAGA-G-ATATACTCCTAAAAGTAAA-CGCGG----GAAA-AT-ATAGC-AAT----CGGT-A--TAGAT----TT-TCA-GAC--T-ATTT-CC--CTAG-G-GC----A--AATAG---TTTCA----------------------CAAA---------------CTATTATC-TG--GGTAG-G--TTTTTCAGGGG-AATA-G-CAAATTT---ATTCA-C-GTA-ACAT---TTA-TCAT-AGTGG-AAA--CAGTCTGAGGTTTAAT
gi|2 : caaagttaaaccaagaaaCGTAACATTA-G-T----------------AA-CGTGG----GAAA-TA-TCAGCGAA----CCGGT-AAATAG-TTG--TC-TCAGGAC--TAATTT-CC--CTAG-GAGCA---AAGAGTAGT--T-------------------------ACAAACTAGTTCATC--G-AGTATT-GCACGCAAATA-----TTAGC--GGAAAAATA-G-CAAATTCCTGATGCA-CTGTA-ACAT---TTA-T-ATAAGTAACAAAACCAGTCTGAGGTATAAT
gi|11 : aaaaaaaaaagaaattaaacaggcgggtaatcatcaactgacaaatcaagatgataactcgaacattttcagtctacgtcAAAAAGA---A----------------AA-CGCTG----GAAA--A-CTAGC-GA----CAGGT-AAATAG-T----TT-CCA-TACAAT-ATTT-Ca
gi|6 : ccaaagtgaaaccaggaaagatagcttttcgtaagctacaggtaattagagttattgaacgttgacataacatattccgAAAAAGA---A----------------AA-CACGG----GAAA-AC-ATAGC-AA----CCGAT-AAAGAA-T----TT-CCA-AAC--T-ATTT-CT--CTAG-G-GC----A--AATAGT--TCATA-AA---CTATT-TCtagagcaaatagttcaaaaactatttcacgagtagcgttatccagagaaaatagcaaatttatttac
gi|9 : gccaaagtgaaaccaagaaacttagcttttcatgacagataatattaagattatcggactttgacgtaactttgttgctaacactagatatattctgAAGA-G-A----------------AAACGCGG----GAAA-AC-ATTGC-AA-----------------------T-CCA-GAC--T-ATTT-TC--CTAG-G-GC----A--AATAaccagtagcgttttccaggggggggggggggtgttagcaaatttactaac
gi|5 : ttatatcaaagtagaaaccaagaaattagaattatcggattttgatgtatctttgataacgccagagatattccgaAAGG-A-A----------------AA-CACGG----GAAA-AC-ATAGC-A----TCAGGT-AAATAG-T----TT-TCA-GAC--C-ATTT-CC--CTAG-A-AC----A--AATAGT--T----------C-AT-------------AAA-TAGTTCACA--A-A-------------------G--TTATCCAGAGGAA-----------TT---A-TCA-T--TA-ACGT---T---T-AC-GGT-A-AAA--CAGTATGAGGTATAATattcacaaattatttcacgagtagcgttatccaaaggaaatagcaaatttatttatctaacattttataataaaaataat
gi|13 : tttcattataatccgcaaactaccgggaattagagttatcggacatttgataacacttgatattttccgaaAAGA---A----------------AA-TGCTG----GAAA-AC-ATAGC-AA----CCAGT-GAATAG-T----TT-CCA-GAC--T-ATTT-CC--CTCG-G-GC----A--AATAGT--TCACA-AA---CTATT-TCaataaaacatattcacctccatgtgtct
gi|1 : tattagagttatcagactttcacgcaacatatttgataacaccagagatattctgataAAAA-GTA----------------AA-CGCGG----GAAAATA-AAAAA-GA-------GT-AAAGAG-T----TT-------C--T-AGCT-CG--CTGG-G-ACA---A--A-TGGT--TC-----A---C-A--------------------GTTCACA--A-ACTATT-TCACG--AG--------TATCCGGAGGAAATA-G-CAAATTT---ATTatgagt
gi|7 : caaagtgaaagcaagagagatagcttttcatactatttaaaaaagtgtaataacttacatgtgcgaggggtgctgtcgtttgataaactgtcagcaataagagttcggactttaagtaccatattggataacactagaaatattccgaaAGA---A----------------AA-CGCGG----GAAA-CA--TAGC-AA----CCGGT-AAATAG-T----TT-TCA-G-C--T-ATTT-CT--GTAT-G-GC----A--AATAA----TTCACGATATC-ATT-TCACGAT-AGCAA---AGTCCAGAGGA-AATATG-TCAttacaaactttt
gi|6 : tttattacgcgccgaaagaaactatccagttaattgagagttatcgaacttcgacgtaacataattatatttgataacacaagagttattccgaaagcCTGGTGAAATAG-T----TT-ATG-AAC--T-ATTTGCC--CTAG-A-G-----A--AATAGT--TTatttattcatcgaacacattgt
gi|13 : gccaaagtgaaaccaagaaacttagcttttcatgacagataatattaagattatcggactttgacgtaactttgttgctaacactagatatattctgaaaaagaaaacacgggaaaacatagcaaccgataaagaatttcc-AAATAG-T----TT-GTG-AAC--T-ATTTGCC--CGAG-G-G-----A--AATAGT--CTtagcgttttccaggggggggggggggtgttagcaaatttactaac
gi|3 : tattagagttatcagactttcacgcaacatatttgataacaccagagatattctgataaagaaaatgctggaaaacatagcaaccagtgaatagtttccAATAG-T----TTGTGA-AAC--T-ATTTGCC--CTAG-G-G-----A--AATAGT--CTcatgagt
gi|11 : caaagttaaaccaagaaagatacctttccataacatgtaaaaaaaaaaaaaaaaaattaacaagctttcgggcttcagaatgacgtaacaagagatatactcctaaaagtaaacgcgggaaaatatagcaatcggtatagattttc--CTAGCG-ACAGGTA--AATAGT--TTCCA-TA---C-AATATTTCTAG-AGCAAAT-AGTTCAAA--A-ACTATT-TCACG--AGTAGCG--TTATCCAGAGAAAATA-G-CAAATTT---ATTTA-C-atctgggtaggtttttcaggggaatagcaaatttattcacgtaacatttatcatagtggaaacagtctgaggtttaat
gi|7 : ccaaagtgaaaccaggaaagatagcttttcgtaagctacaggtaattagagttattgaacgttgacataacatattccgaaaaagaaaacgctggaaaa---A--AATAGT--TTTCA-GC---T-ATT-TCTGTAT-GGCAAA-TAATTCACG--ATATCATT-TCACG--A-TAGCA--AAGTCCAGAGGAAATATGTCAA-TTT---ATTCATC-GAACACAT---T
gi|6 : tttattacgcgccgaaagaaactatccagttaattgagagttatcgaacttcgacgtaacataattatatttgataacacaagagttattccgaaagcagaaaacgcgggaaacatagcaaccggt---A--AAGAAT--TTCCA-AA---CTATT-TCTCTAG-GGCAAAT-AGTTCATA--A-ACTATT-TCACC--AGTAGCG--TTTTCCAGGGGgt
gi|13 : gccaaagtgaaaccaagaaacttagcttttcatgacagataatattaagattatcggactttgacgtaactttgttgctaacactagatatattctgaaaaagaaaacacgggaaaacatagcaaccgat--AATAGT--TTCCA-GA---CTATT-TCCCTCG-GGCAAAT-AGTTCACA--A-ACTATT-TCATG--AGTggggggggggtgttagcaaatttactaac
gi|10 : tattagagttatcagactttcacgcaacatatttgataacaccagagatattctgataaagaaaatgctggaaaacatagcaaccagtg--AATAGT--TT-CA-GA---CTATT---CCTA--GGCAA--TG--TCACA-------ACT-TCCTA--GTTAGCGCATTATCCAGAGG-AATT-T-CAA--TT---A-TCA-C-CTA-ATATGCATCAGT-AC-AGTAA-AA
gi|9 : gaaacaggaagatagttctttggtaagccccaattgagagttatcgaacttggtaacagtattcatacaatattattccgaaaaaagaaacgggaatataaatagtTCCA-GA---CTATT-TTCCTAG-GGCAAAT-AATTCACA--A-ATTATT-TCACG--AGTAGCG--TTATCCAAAGGAAATA-G-CAAATTT---ATTTA-T-CTA-ACAT---TT--T-AT-AATAA-AAA--TAATca
gi|16 : ttatatcaaagtagaaaccaagaaattagaattatcggattttgatgtatctttgataacgccagagatattccgaaagagaaaacgcgggaaaacattgcaa-TCATG--TGTAGCA--TTATTCAGGGGAAATA-G-CAA---------------------AT---TTA-T-AT-AGTAA-AAA--CAGTCTGAAGTAT
gi|15 : --AGTAGCG--TTATCCAGAGAAAATA-G-CAAATCT---ATTCA-T-CTA-ACAT---TTA-T-AC-AGTAA-AAA--CAGTGTGAGGTA
gi|18 : T---ATTCA-C-CTA-ACAT---TTA-T-AC-CGTAA-AAA--CAGTCTGAGGTAT
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): TATACCAAAGTAAGATAACTTTTTAAGATAAACTACCGATAATGAGGGTTATCAGCCTTTGACGTAACATATT
Unaligned ( gi|17 ): GGTATCTTATTATACCAACGTGAAACCAAGAAAGATAACTTTCC
Alignments
lowQualScore : 1 4444444444 111 1111 222222222222 1111111111
lowQualScore : 0 3333333333 2 222 3 6666 666 3 1 3 8888 3 555 6666 7 2 33 777 5 3 3 44 99 1 2 3 222222222222 3 3 55 0 3 66 3 44 77777777 1 44 4444444444 3 3 555 1 555 777 4 4 4 4 66
lowQualScore : . .......... . ... . .... ... . . . .... . ... .... . . .. ... . . . .. .. . . . ............ . . .. . . .. . .. ........ . .. .......... . . ... . ... ... . . . . ..
lowQualScore : 0 8888888888 5 888 1 5555 555 1 5 1 5555 1 444 5555 5 2 88 555 4 1 1 22 22 4 2 1 333333333333 6 6 00 5 3 55 1 22 99999999 2 22 6666666666 3 3 444 5 000 888 4 4 4 4 99
consensus : GATACCTTTC-CATACTATGTAAAAAAAA----------TTAACAAGCTTTCGGGCTTCAGAATGACGTAACAAGA-G-AAA-CGCGG----GAAA-ACAT-AGC-AA----C-CGGTAAA---TAGT----TTTCAGAC-TATTTCC--CTAGGGCAAA-TAG-T--TTCCAGACTA-TTTCCCTA-G--G-CAAAT-AG-T--TCACAAACTATT-TCA-CGAGT-A--GCG--T-----TATCCAGAGG--AAA----------TA-GCAAATTT---ATTCACC-TAACAT---TTA-T-AC-AGTAA-AAA--CAGTCTGAGGTATAAT
Reference ( family-248 ) : GATACCTTTC-CATACTATGTAAAAAAAA----------TTAACAAGCTTTCGGGCTTCAGAATGACGTAACAAGA-G-AAA-CGCGG----GAAA-ANAT-AGC-AA----C-CGGTAAA---TAGT----TTTCAGAC-TATTTCC--CTAGGGCAAA-TAG-T--TTCCAGACTA-TTTCCCTA-G--G-CAAAT-AG-T--TCACAAACTATT-TCA-CGAGT-A--GCG--T-----TATCCAGAGG--AAA----------TA-GCAAATTT---ATTCACC-TAACAT---TTA-T-AC-AGTAA-AAA--CAGTCTGAGGTATAAT
gi|1 : AAAA-GTAAA-CGCGG----GAAA-ATAA-A---AA----A-GAGTAAA---GAGT----TT-----C-TAGCTCG--CTGGGACAAA-TGG-T--TC--------------------------AC-AG-T--TCACAAACTATT-TCA-CGAG----------------TATCCGGAGG--AAA----------TA-GCAAATTT---ATT
gi|10 : caaagtgaaagcaagagagatagcttttcatactatttaaaaaagtgtaataacttacatgtgcgaggggtgctgtcgtttgataaactgtcagcaataagagttcggactttaagtaccatattggataacactagaaatattccgaaAAAA-G-AAA-CG--G----GAA---TAT-A---AA----T--AGTAA----TAGT----TT-CAGAC-TATT--C--CTA-GGCAAttacaaactttt
gi|10 : gaaacaggaagatagttctttggtaagccccaattgagagttatcgaacttggtaacagtattcatacaatattattccgaaAA-TAG-T--TTC-AGACTA-TT--CCTA-G--G-CAA-T-G-----TCACAA----CT-TC--CTAGTTA--GCGCAT-----TATCCAGAGG---AA----------TT-TCAA--TT---A-TCACC-TAATATGCATCAGT-AC-AGTAA-AAtgtcacaacttcctagttagcgcattatccagaggaatttcaattatcacctaatatgcatcagtacagtaaaaca
gi|11 : gaaacaggaagatagttctttggtaagccccaattgagagttatcgaacttggtaacagtattcatacaatattattccgaaaaaagaaacgggaatataaatagtAAAAAGA---AAA-CGCTG----GAAA-AC-T-AGC-GA----C-AGGTAAA---TAGT----TTCCATAC------------------AA-TA--T--TTCTAGA----------------G-CAAAT-AG-T--TCAAAAACTATT-TCA-CGAGT-A--GCG--T-----TATCCAGAGA--AAA----------TA-GCAAATTT---ATTTACca
gi|12 : ccaaagtgaaaccaggaaagatagcttttcgtaagctacaggtaattagagttattgaacgttgacataacatattccgGATACCTTTC-CATACTATGTAAAAAAAA----------TTAACAAGCTTTCGGGCTTCAGAATGACGTAACAAGA-G-AAA-CGCGG----GAAA-ATAT-AGC-AATTTTC-CGGTAAA---TAGT----TTTCAGAC-TATTTCC--CTAGGGCAA
gi|13 : caaagttaaaccaagaaaAAGA---AAA-TGCTG----GAAA-ACAT-AGC-AA----C-CAGTGAA---TAGT----TTCCAGAC-TATTTCC--CTCGGGCAAA-TAG-T--TCACAAACTA-TTTC
gi|15 : tattagagttatcagactttcacgcaacatatttgataacaccagagatattctgataAGT-A--GCG--T-----TATCCAGAGA--AAA----------TA-GCAAATCT---ATTCATC-TAACAT---TTA-T-AC-AGTAA-AAA--CAGTGTGAGGTAatgagt
gi|16 : -TCA-TGTGT-A--GCA--T-----TATTCAGGGG--AAA----------TA-GCAA-------------------AT---TTA-T-AT-AGTAA-AAA--CAGTCTGAAGTAT
gi|18 : T---ATTCACC-TAACAT---TTA-T-AC-CGTAA-AAA--CAGTCTGAGGTAT
gi|2 : gCGTAACATTA-G-TAA-CGTGG----GAAA--TATCAGCGAA----C-CGGTAAA---TAGT----T------------------------------G-T--CTCAGGACTAATTTCCCTA-GGAG-CAAAG-AG-TAGTTACAAACTAGT-TCATCGAGT-ATTGCA--CGCAAATAT-TAGCGGAAAAA----------TA-GCAAATTCCTGATGCACTGTAACAT---TTA-T-ATAAGTAACAAAACCAGTCTGAGGTATAATta
gi|3 : aaaaaaaaaagaaattaaacaggcgggtaatcatcaactgacaaatcaagatgataactcgaacattttcagtctacgtcGATACCTTTC-CATAACATGTAAAAAAAAAAAAAAAAAATTAACAAGCTTTCGGGCTTCAGAATGACGTAACAAGA-G-ATA-TACTC----CTAA-AAGT-A---AA----CGCGGGAAAATATAG--------CAA-------TC-------GGTA---TAGAT--TTTCAGACTA-TTTCCCTAGG--G-CAAAT-AGTT--TCACAAACTATTATC--TGGGT-A--G-G--T-----TTTTCAG-GG--GAA----------TA-GCAAATTT---ATTCACG-TAACAT---TTA-TCAT-AGTGG-AAA--CAGTCTGAGGTTTAATa
gi|4 : caaagttaaaccaagaaaGATACCTTTCACATACTATGTAAAAAAAA----------TTAA-AAGCTTTCGGGCTTCAGAATGACGTAACAAGA-G-AAA-CGCGG----GAAA-TAAT-AGC-AATTTTC-CGGTAAA---TAGT----TTTCAGAC-TATTTCC--CTAGGGCAAAATAG-T--TTTCAGAC-A-TTTCCCTATG--G-CAAATTAG-T--TCACAAACTATT-TCA-TGAGT-A--GCG--T-----TATTCAGGGG--AAA----------TA-GCAATTTT---ATTCACG-TAACAT---TTA-T-AT-AGTAA-AAA--CAGTCTGAGGTATAAT
gi|5 : AAGG-A-AAA-CACGG----GAAA-ACAT-AGC-AT----C-AGGTAAA---TAGT----TTTCAGAC-CATTTCC--CTAGAACAAA-TAG-T--T--CA--------------------TAAAT-AG-T--TCACAAA---------------------G--T-----TATCCAGAGG--AA--------------------TT---A-TCA-T-TAACGT---T---T-AC-GGT-A-AAA--CAGTATGAGGTATAAT
gi|6 : tttcattataatccgcaaactaccgggaattagagttatcggacatttgataacacttgatattttccgaaAAAAAGA---AAA-CACGG----GAAA-ACAT-AGC-AA----C-CGATAAA---GAAT----TTCCAAAC-TATTTCT--CTAGGGCAAA-TAG-T--TCATAAACTA-TTTCACCA-G--aataaaacatattcacctccatgtgtct
gi|6 : gccaaagtgaaaccaagaaacttagcttttcatgacagataatattaagattatcggactttgacgtaactttgttgctaacactagatatattctgAAA-GAA-T--TTCCAAACTA-TTTCTCTA-G--GGCAAAT-AG-T--TCATAAACTATT-TCA-CCAGT-A--GCG--T-----TTTCCAGGGG--GGGGGGGGGGTGTTA-GCAAATTT---ACTAACtagcgttttccaggggggggggggggtgttagcaaatttactaac
gi|7 : gccaaagtgaaaccaagaaacttagcttttcatgacagataatattaagattatcggactttgacgtaactttgttgctaacactagatatattctgaaaaagaaaacacgggaaaacatagcaaccgatAGA---AAA-CGCGG----GAAA--CAT-AGC-AA----C-CGGTAAA---TAGT----TTTCAG-C-TATTTCT--GTATGGCAAA-TAA-T--TC----ACGA-TATC-------------AT----T--TCACGA---------------T-A--GCA--A-----AGTCCAGAGG--AAA----------TATGTCAATTT---ATTCATC-GAACA
gi|8 : tttattacgcgccgaaagaaactatccagttaattgagagttatcgaacttcgacgtaacataattatatttgataacacaagagttattccgaaagcGATACCTTTC-CATACTATGTAAAAAAAA----------TTAACAAGCTTTCGGGCTTCAGAATGACGT-ACAAGAGG-AAA-C-CGGAGGAGAAATATAT-AGC-AATTT-C-CAGTAAA---TAGTATAGTTTCAGATACATTTCTCACTA-GGCAAA-TAG-TGATTTCAGACTA-TTT--ATA-G--G-CAAAT-AG-T--TCACAAACTATT-TCA-TGAGT-A--GCG--T-----TATTCAGGGG--AAcattgt
gi|9 : aaagttaaaccaagaaaAAGA-G-AAAACGCGG----GAAA-ACAT-TGC-AA----T-C--------------------CAGAC-TATTTTC--CTAGGGCAAA-TAA-T--T
gi|9 : ttatatcaaagtagaaaccaagaaattagaattatcggattttgatgtatctttgataacgccagagatattccgaTCCAGACTA-TTTTCCTA-G--GGCAAAT-AA-T--TCACAAATTATT-TCA-CGAGT-A--GCG--T-----TATCCAAAGG--AAA----------TA-GCAAATTT---ATTTATC-TAACAT---TT--T-AT-AATAA-AAA--TAATcacaaattatttcacgagtagcgttatccaaaggaaatagcaaatttatttatctaacattttataataaaaataat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TATACCAAAGTAAGATAACTTTTTAAGATAAACTACCGATAATGAGGGTTATCAGCCTTTGACGTAACATATT
Unaligned ( gi|17 ): GGTATCTTATTATACCAACGTGAAACCAAGAAAGATAACTTTCC
Alignments
lowQualScore : 1 4444444444 111 1111 222222222222 1111111111
lowQualScore : 0 3333333333 2 44 444 3 6666 888 3 3 8888 3 555 6666 7 2 33 777 5 3 3 44 99 1 2 3 222222222222 3 3 55 0 3 66 3 44 77777777 1 44 4444444444 3 3 555 1 555 777 4 4 4 4 66
lowQualScore : . .......... . .. ... . .... ... . . .... . ... .... . . .. ... . . . .. .. . . . ............ . . .. . . .. . .. ........ . .. .......... . . ... . ... ... . . . . ..
lowQualScore : 0 8888888888 5 22 777 1 5555 555 1 1 5555 1 444 5555 5 2 88 555 4 1 1 22 22 4 2 1 333333333333 6 6 00 5 3 55 1 22 99999999 2 22 6666666666 3 3 444 5 000 888 4 4 4 4 99
consensus : GATACCTTTC-CATACTATGTAAAAAAAA----------TTAACAAGCTTTCGGGCTTCAGAATGACGTAACA--AGA-G-AAA-CGCGG----GAAA-ACAT-AGC-AA----C-CGGTAAA---TAGT----TTTCAGAC-TATTTCC--CTAGGGCAAA-TAG-T--TTCCAGACTA-TTTCCCTA-G--G-CAAAT-AG-T--TCACAAACTATT-TCA-CGAGT-A--GCG--T-----TATCCAGAGG--AAA----------TA-GCAAATTT---ATTCACC-TAACAT---TTA-T-AC-AGTAA-AAA--CAGTCTGAGGTATAAT
Reference ( family-248 ) : GATACCTTTC-CATACTATGTAAAAAAAA----------TTAACAAGCTTTCGGGCTTCAGAATGACGTAACA--AGA-G-AAA-CGCGG----GAAA-ACAT-AGC-AA----C-CGGTAAA---TAGT----TTTCAGAC-TATTTCC--CTAGGGCAAA-TAG-T--TTCCAGACTA-TTTCCCTA-G--G-CAAAT-AG-T--TCACAAACTATT-TCA-CGAGT-A--GCG--T-----TATCCAGAGG--AAA----------TA-GCAAATTT---ATTCACC-TAACAT---TTA-T-AC-AGTAA-AAA--CAGTCTGAGGTATAAT
gi|1 : A--AAA-GTAAA-CGCGG----GAAA-A--T-AAA-AA----A-GAGTAAA---GAGT----TT-----C-TAGCTCG--CTGGGACAAA-TGG-T--TC--------------------------AC-AG-T--TCACAAACTATT-TCA-CGAG----------------TATCCGGAGG--AAA----------TA-GCAAATTT---ATT
gi|10 : caaagtgaaagcaagagagatagcttttcatactatttaaaaaagtgtaataacttacatgtgcgaggggtgctgtcgtttgataaactgtcagcaataagagttcggactttaagtaccatattggataacactagaaatattccgaaA--AAA-G-AAA-CG--G----GAA---TAT-A---AA----T--AGTAA----TAGT----TT-CAGAC-TATT--C--CTA-GGCAAttacaaactttt
gi|10 : gaaacaggaagatagttctttggtaagccccaattgagagttatcgaacttggtaacagtattcatacaatattattccgaaAA-TAG-T--TTC-AGACTA-TT--CCTA-G--G-CAA-T-G-----TCACAA----CT-TC--CTAGTTA--GCGCAT-----TATCCAGAGG---AA----------TT-TCAA--TT---A-TCACC-TAATATGCATCAGT-AC-AGTAA-AAtgtcacaacttcctagttagcgcattatccagaggaatttcaattatcacctaatatgcatcagtacagtaaaaca
gi|11 : gaaacaggaagatagttctttggtaagccccaattgagagttatcgaacttggtaacagtattcatacaatattattccgaaaaaagaaacgggaatataaatagtAAAA--AGA---AAA-CGCTG----GAAA-AC-T-AGC-GA----C-AGGTAAA---TAGT----TTCCATAC------------------AA-TA--T--TTCTAGA----------------G-CAAAT-AG-T--TCAAAAACTATT-TCA-CGAGT-A--GCG--T-----TATCCAGAGA--AAA----------TA-GCAAATTT---ATTTACca
gi|12 : ccaaagtgaaaccaggaaagatagcttttcgtaagctacaggtaattagagttattgaacgttgacataacatattccgGATACCTTTC-CATACTATGTAAAAAAAA----------TTAACAAGCTTTCGGGCTTCAGAATGACGTAACA--AGA-G-AAA-CGCGG----GAAA-ATAT-AGC-AATTTTC-CGGTAAA---TAGT----TTTCAGAC-TATTTCC--CTAGGGCAA
gi|13 : caaagttaaaccaagaaaA--AGA---AAA-TGCTG----GAAA-ACAT-AGC-AA----C-CAGTGAA---TAGT----TTCCAGAC-TATTTCC--CTCGGGCAAA-TAG-T--TCACAAACTA-TTTC
gi|15 : tattagagttatcagactttcacgcaacatatttgataacaccagagatattctgataAGT-A--GCG--T-----TATCCAGAGA--AAA----------TA-GCAAATCT---ATTCATC-TAACAT---TTA-T-AC-AGTAA-AAA--CAGTGTGAGGTAatgagt
gi|16 : -TCA-TGTGT-A--GCA--T-----TATTCAGGGG--AAA----------TA-GCAA-------------------AT---TTA-T-AT-AGTAA-AAA--CAGTCTGAAGTAT
gi|18 : T---ATTCACC-TAACAT---TTA-T-AC-CGTAA-AAA--CAGTCTGAGGTAT
gi|2 : gCGTAACA--TTA-G-TAA-CGTGG----GAAA--TATCAGCGAA----C-CGGTAAA---TAGT----T------------------------------G-T--CTCAGGACTAATTTCCCTA-GGAG-CAAAG-AG-TAGTTACAAACTAGT-TCATCGAGT-ATTGCA--CGCAAATAT-TAGCGGAAAAA----------TA-GCAAATTCCTGATGCACTGTAACAT---TTA-T-ATAAGTAACAAAACCAGTCTGAGGTATAATta
gi|3 : aaaaaaaaaagaaattaaacaggcgggtaatcatcaactgacaaatcaagatgataactcgaacattttcagtctacgtcGATACCTTTC-CATAACATGTAAAAAAAAAAAAAAAAAATTAACAAGCTTTCGGGCTTCAGAATGACGTAACAAGAGA-T-ATA-CTCCT----AAAA-GTA------AA----CGCGGGAAAATATAG--------CAA-------TC-------GGTA---TAGAT--TTTCAGACTA-TTTCCCTAGG--G-CAAAT-AGTT--TCACAAACTATTATC--TGGGT-A--G-G--T-----TTTTCAG-GG--GAA----------TA-GCAAATTT---ATTCACG-TAACAT---TTA-TCAT-AGTGG-AAA--CAGTCTGAGGTTTAATa
gi|4 : caaagttaaaccaagaaaGATACCTTTCACATACTATGTAAAAAAAA----------TTAA-AAGCTTTCGGGCTTCAGAATGACGTAACA--AGA-G-AAA-CGCGG----GAAA-TAAT-AGC-AATTTTC-CGGTAAA---TAGT----TTTCAGAC-TATTTCC--CTAGGGCAAAATAG-T--TTTCAGAC-A-TTTCCCTATG--G-CAAATTAG-T--TCACAAACTATT-TCA-TGAGT-A--GCG--T-----TATTCAGGGG--AAA----------TA-GCAATTTT---ATTCACG-TAACAT---TTA-T-AT-AGTAA-AAA--CAGTCTGAGGTATAAT
gi|5 : A--AGG-A-AAA-CACGG----GAAA-ACAT-AGC-AT----C-AGGTAAA---TAGT----TTTCAGAC-CATTTCC--CTAGAACAAA-TAG-T--T--CA--------------------TAAAT-AG-T--TCACAAA---------------------G--T-----TATCCAGAGG--AA--------------------TT---A-TCA-T-TAACGT---T---T-AC-GGT-A-AAA--CAGTATGAGGTATAAT
gi|6 : tttcattataatccgcaaactaccgggaattagagttatcggacatttgataacacttgatattttccgaaAAAA--AGA---AAA-CACGG----GAAA-ACAT-AGC-AA----C-CGATAAA---GAAT----TTCCAAAC-TATTTCT--CTAGGGCAAA-TAG-T--TCATAAACTA-TTTCACCA-G--aataaaacatattcacctccatgtgtct
gi|6 : gccaaagtgaaaccaagaaacttagcttttcatgacagataatattaagattatcggactttgacgtaactttgttgctaacactagatatattctgAAA-GAA-T--TTCCAAACTA-TTTCTCTA-G--GGCAAAT-AG-T--TCATAAACTATT-TCA-CCAGT-A--GCG--T-----TTTCCAGGGG--GGGGGGGGGGTGTTA-GCAAATTT---ACTAACtagcgttttccaggggggggggggggtgttagcaaatttactaac
gi|7 : gccaaagtgaaaccaagaaacttagcttttcatgacagataatattaagattatcggactttgacgtaactttgttgctaacactagatatattctgaaaaagaaaacacgggaaaacatagcaaccgat--AGA---AAA-CGCGG----GAAA--CAT-AGC-AA----C-CGGTAAA---TAGT----TTTCAG-C-TATTTCT--GTATGGCAAA-TAA-T--TC----ACGA-TATC-------------AT----T--TCACGA---------------T-A--GCA--A-----AGTCCAGAGG--AAA----------TATGTCAATTT---ATTCATC-GAACA
gi|8 : tttattacgcgccgaaagaaactatccagttaattgagagttatcgaacttcgacgtaacataattatatttgataacacaagagttattccgaaagcGATACCTTTC-CATACTATGTAAAAAAAA----------TTAACAAGCTTTCGGGCTTCAGAATGACGT-ACA--AGAGG-AAA-C-CGGAGGAGAAATATAT-AGC-AATTT-C-CAGTAAA---TAGTATAGTTTCAGATACATTTCTCACTA-GGCAAA-TAG-TGATTTCAGACTA-TTT--ATA-G--G-CAAAT-AG-T--TCACAAACTATT-TCA-TGAGT-A--GCG--T-----TATTCAGGGG--AAcattgt
gi|9 : aaagttaaaccaagaaaA--AGA-G-AAAACGCGG----GAAA-ACAT-TGC-AA----T-C--------------------CAGAC-TATTTTC--CTAGGGCAAA-TAA-T--T
gi|9 : ttatatcaaagtagaaaccaagaaattagaattatcggattttgatgtatctttgataacgccagagatattccgaTCCAGACTA-TTTTCCTA-G--GGCAAAT-AA-T--TCACAAATTATT-TCA-CGAGT-A--GCG--T-----TATCCAAAGG--AAA----------TA-GCAAATTT---ATTTATC-TAACAT---TT--T-AT-AATAA-AAA--TAATcacaaattatttcacgagtagcgttatccaaaggaaatagcaaatttatttatctaacattttataataaaaataat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TATACCAAAGTAAGATAACTTTTTAAGATAAACTACCGATAATGAGGGTTATCAGCCTTTGACGTAACATATT
Unaligned ( gi|17 ): GGTATCTTATTATACCAACGTGAAACCAAGAAAGATAACTTTCC
Alignments
lowQualScore : 1 4444444444 111 1111 222222222222 1111111111
lowQualScore : 0 3333333333 2 44 444 3 6666 888 3 3 8888 3 555 6666 7 2 33 777 5 3 3 44 99 1 2 3 222222222222 3 3 55 0 3 66 3 44 77777777 1 44 4444444444 3 3 555 1 555 777 4 4 4 4 66
lowQualScore : . .......... . .. ... . .... ... . . .... . ... .... . . .. ... . . . .. .. . . . ............ . . .. . . .. . .. ........ . .. .......... . . ... . ... ... . . . . ..
lowQualScore : 0 8888888888 5 22 777 1 5555 555 1 1 5555 1 444 5555 5 2 88 555 4 1 1 22 22 4 2 1 333333333333 6 6 00 5 3 55 1 22 99999999 2 22 6666666666 3 3 444 5 000 888 4 4 4 4 99
consensus : GATACCTTTC-CATACTATGTAAAAAAAA----------TTAACAAGCTTTCGGGCTTCAGAATGACGTAACA--AGA-G-AAA-CGCGG----GAAA-ACAT-AGC-AA----C-CGGTAAA---TAGT----TTTCAGAC-TATTTCC--CTAGGGCAAA-TAG-T--TTCCAGACTA-TTTCCCTA-G--G-CAAAT-AG-T--TCACAAACTATT-TCA-CGAGT-A--GCG--T-----TATCCAGAGG--AAA----------TA-GCAAATTT---ATTCACC-TAACAT---TTA-T-AC-AGTAA-AAA--CAGTCTGAGGTATAAT
Reference ( family-248 ) : GATACCTTTC-CATACTATGTAAAAAAAA----------TTAACAAGCTTTCGGGCTTCAGAATGACGTAACA--AGA-G-AAA-CGCGG----GAAA-ACAT-AGC-AA----C-CGGTAAA---TAGT----TTTCAGAC-TATTTCC--CTAGGGCAAA-TAG-T--TTCCAGACTA-TTTCCCTA-G--G-CAAAT-AG-T--TCACAAACTATT-TCA-CGAGT-A--GCG--T-----TATCCAGAGG--AAA----------TA-GCAAATTT---ATTCACC-TAACAT---TTA-T-AC-AGTAA-AAA--CAGTCTGAGGTATAAT
gi|1 : A--AAA-GTAAA-CGCGG----GAAA-A--T-AAA-AA----A-GAGTAAA---GAGT----TT-----C-TAGCTCG--CTGGGACAAA-TGG-T--TC--------------------------AC-AG-T--TCACAAACTATT-TCA-CGAG----------------TATCCGGAGG--AAA----------TA-GCAAATTT---ATT
gi|10 : caaagtgaaagcaagagagatagcttttcatactatttaaaaaagtgtaataacttacatgtgcgaggggtgctgtcgtttgataaactgtcagcaataagagttcggactttaagtaccatattggataacactagaaatattccgaaA--AAA-G-AAA-CG--G----GAA---TAT-A---AA----T--AGTAA----TAGT----TT-CAGAC-TATT--C--CTA-GGCAAttacaaactttt
gi|10 : gaaacaggaagatagttctttggtaagccccaattgagagttatcgaacttggtaacagtattcatacaatattattccgaaAA-TAG-T--TTC-AGACTA-TT--CCTA-G--G-CAA-T-G-----TCACAA----CT-TC--CTAGTTA--GCGCAT-----TATCCAGAGG---AA----------TT-TCAA--TT---A-TCACC-TAATATGCATCAGT-AC-AGTAA-AAtgtcacaacttcctagttagcgcattatccagaggaatttcaattatcacctaatatgcatcagtacagtaaaaca
gi|11 : gaaacaggaagatagttctttggtaagccccaattgagagttatcgaacttggtaacagtattcatacaatattattccgaaaaaagaaacgggaatataaatagtAAAA--AGA---AAA-CGCTG----GAAA-AC-T-AGC-GA----C-AGGTAAA---TAGT----TTCCATAC------------------AA-TA--T--TTCTAGA----------------G-CAAAT-AG-T--TCAAAAACTATT-TCA-CGAGT-A--GCG--T-----TATCCAGAGA--AAA----------TA-GCAAATTT---ATTTACca
gi|12 : ccaaagtgaaaccaggaaagatagcttttcgtaagctacaggtaattagagttattgaacgttgacataacatattccgGATACCTTTC-CATACTATGTAAAAAAAA----------TTAACAAGCTTTCGGGCTTCAGAATGACGTAACA--AGA-G-AAA-CGCGG----GAAA-ATAT-AGC-AATTTTC-CGGTAAA---TAGT----TTTCAGAC-TATTTCC--CTAGGGCAA
gi|13 : caaagttaaaccaagaaaA--AGA---AAA-TGCTG----GAAA-ACAT-AGC-AA----C-CAGTGAA---TAGT----TTCCAGAC-TATTTCC--CTCGGGCAAA-TAG-T--TCACAAACTA-TTTC
gi|15 : tattagagttatcagactttcacgcaacatatttgataacaccagagatattctgataAGT-A--GCG--T-----TATCCAGAGA--AAA----------TA-GCAAATCT---ATTCATC-TAACAT---TTA-T-AC-AGTAA-AAA--CAGTGTGAGGTAatgagt
gi|16 : -TCA-TGTGT-A--GCA--T-----TATTCAGGGG--AAA----------TA-GCAA-------------------AT---TTA-T-AT-AGTAA-AAA--CAGTCTGAAGTAT
gi|18 : T---ATTCACC-TAACAT---TTA-T-AC-CGTAA-AAA--CAGTCTGAGGTAT
gi|2 : gCGTAACA--TTA-G-TAA-CGTGG----GAAA--TATCAGCGAA----C-CGGTAAA---TAGT----T------------------------------G-T--CTCAGGACTAATTTCCCTA-GGAG-CAAAG-AG-TAGTTACAAACTAGT-TCATCGAGT-ATTGCA--CGCAAATAT-TAGCGGAAAAA----------TA-GCAAATTCCTGATGCACTGTAACAT---TTA-T-ATAAGTAACAAAACCAGTCTGAGGTATAATta
gi|3 : aaaaaaaaaagaaattaaacaggcgggtaatcatcaactgacaaatcaagatgataactcgaacattttcagtctacgtcGATACCTTTC-CATAACATGTAAAAAAAAAAAAAAAAAATTAACAAGCTTTCGGGCTTCAGAATGACGTAACAAGAGA-T-ATA-CTCCT----AAAA-GTA------AA----CGCGGGAAAATATAG--------CAA-------TC-------GGTA---TAGAT--TTTCAGACTA-TTTCCCTAGG--G-CAAAT-AGTT--TCACAAACTATTATC--TGGGT-A--G-G--T-----TTTTCAG-GG--GAA----------TA-GCAAATTT---ATTCACG-TAACAT---TTA-TCAT-AGTGG-AAA--CAGTCTGAGGTTTAATa
gi|4 : caaagttaaaccaagaaaGATACCTTTCACATACTATGTAAAAAAAA----------TTAA-AAGCTTTCGGGCTTCAGAATGACGTAACA--AGA-G-AAA-CGCGG----GAAA-TAAT-AGC-AATTTTC-CGGTAAA---TAGT----TTTCAGAC-TATTTCC--CTAGGGCAAAATAG-T--TTTCAGAC-A-TTTCCCTATG--G-CAAATTAG-T--TCACAAACTATT-TCA-TGAGT-A--GCG--T-----TATTCAGGGG--AAA----------TA-GCAATTTT---ATTCACG-TAACAT---TTA-T-AT-AGTAA-AAA--CAGTCTGAGGTATAAT
gi|5 : A--AGG-A-AAA-CACGG----GAAA-ACAT-AGC-AT----C-AGGTAAA---TAGT----TTTCAGAC-CATTTCC--CTAGAACAAA-TAG-T--T--CA--------------------TAAAT-AG-T--TCACAAA---------------------G--T-----TATCCAGAGG--AA--------------------TT---A-TCA-T-TAACGT---T---T-AC-GGT-A-AAA--CAGTATGAGGTATAAT
gi|6 : tttcattataatccgcaaactaccgggaattagagttatcggacatttgataacacttgatattttccgaaAAAA--AGA---AAA-CACGG----GAAA-ACAT-AGC-AA----C-CGATAAA---GAAT----TTCCAAAC-TATTTCT--CTAGGGCAAA-TAG-T--TCATAAACTA-TTTCACCA-G--aataaaacatattcacctccatgtgtct
gi|6 : gccaaagtgaaaccaagaaacttagcttttcatgacagataatattaagattatcggactttgacgtaactttgttgctaacactagatatattctgAAA-GAA-T--TTCCAAACTA-TTTCTCTA-G--GGCAAAT-AG-T--TCATAAACTATT-TCA-CCAGT-A--GCG--T-----TTTCCAGGGG--GGGGGGGGGGTGTTA-GCAAATTT---ACTAACtagcgttttccaggggggggggggggtgttagcaaatttactaac
gi|7 : gccaaagtgaaaccaagaaacttagcttttcatgacagataatattaagattatcggactttgacgtaactttgttgctaacactagatatattctgaaaaagaaaacacgggaaaacatagcaaccgat--AGA---AAA-CGCGG----GAAA--CAT-AGC-AA----C-CGGTAAA---TAGT----TTTCAG-C-TATTTCT--GTATGGCAAA-TAA-T--TC----ACGA-TATC-------------AT----T--TCACGA---------------T-A--GCA--A-----AGTCCAGAGG--AAA----------TATGTCAATTT---ATTCATC-GAACA
gi|8 : tttattacgcgccgaaagaaactatccagttaattgagagttatcgaacttcgacgtaacataattatatttgataacacaagagttattccgaaagcGATACCTTTC-CATACTATGTAAAAAAAA----------TTAACAAGCTTTCGGGCTTCAGAATGACGT-ACA--AGAGG-AAA-C-CGGAGGAGAAATATAT-AGC-AATTT-C-CAGTAAA---TAGTATAGTTTCAGATACATTTCTCACTA-GGCAAA-TAG-TGATTTCAGACTA-TTT--ATA-G--G-CAAAT-AG-T--TCACAAACTATT-TCA-TGAGT-A--GCG--T-----TATTCAGGGG--AAcattgt
gi|9 : aaagttaaaccaagaaaA--AGA-G-AAAACGCGG----GAAA-ACAT-TGC-AA----T-C--------------------CAGAC-TATTTTC--CTAGGGCAAA-TAA-T--T
gi|9 : ttatatcaaagtagaaaccaagaaattagaattatcggattttgatgtatctttgataacgccagagatattccgaTCCAGACTA-TTTTCCTA-G--GGCAAAT-AA-T--TCACAAATTATT-TCA-CGAGT-A--GCG--T-----TATCCAAAGG--AAA----------TA-GCAAATTT---ATTTATC-TAACAT---TT--T-AT-AATAA-AAA--TAATcacaaattatttcacgagtagcgttatccaaaggaaatagcaaatttatttatctaacattttataataaaaataat
blockSeqs : A AAAAAAAAAA C AG GG A AGGA TAT C G TTTT G ATA ATAG C A AC TCA G A A GA CT G T A TCCCTAGGAG T T AG A AT T TT CGCAAA A AA GGGGGGGTGT T A CTG T CTG . . C A C AC
blockSeqs : . . C . G . . AC . . TTTT . . . T A T C G . . . AC G T . TCCCTAGGG . . . . A . . CAT A . . . A . T TC . . . . . .
blockSeqs : . . . . G . . AT . . TTT . . . C A T C G . . . CA A T . TCCCTATGG . . . . A . . T A . . . A . T CC . . . . . .
blockSeqs : . G . . AC . . . . . . T A T C G . . . TC G T . TCTCTAGGG . . . . A . . T G . . . A . T CG . . . . . .
blockSeqs : . T . . GT . . . . . . T A T C G . . . TC G T . TTCCTAGGG . . . . A . . T C . . . T . T CG . . . . . .
blockSeqs : . G . . TA . . . . . . C A C C T . . . AT G T . CCTAGG . . . . A . . T G . . . A . T TC . . . . . .
blockSeqs : . A . . AC . . . . . . T A T T G . . . CC A G . TATAGG . . . . A . . T A . . . A . C TC . . . . . .
blockSeqs : . G . . AC . . . . . . T A T T . . . . TC A T . TC . . . . . . . T G . . . A . T T . . . . .
blockSeqs : . . . . AC . . . . . . . A T C . . . . CC G T . G . . . . . . . T A . . . . . T .
blockSeqs : . . . . T . . . . . . . . . . . . . . C G . . . . . . . . . . A G . . . . . .
blockSeqs : . . . . T . . . . . . . . . . . . . . C . . . . . . . T A . . . . . .
blockSeqs : . . . . C . . . . . . . . . . . . . . . . . . . . T . . . .
blockSeqCons : G** AC* CC TCCCTAGGG*** T******* ***
originalCons : GATACCTTTC-CATACTATGTAAAAAAAA----------TTAACAAGCTTTCGGGCTTCAGAATGACGTAACA--AGA-G-AAA-CGCGG----GAAA-ACAT-AGC-AA----C-CGGTAAA---TAGT----TTTCAGAC-TATTTCC--CTAGGGCAAA-TAG-T--TTCCAGACTA-TTTCCCTA-G--G-CAAAT-AG-T--TCACAAACTATT-TCA-CGAGT-A--GCG--T-----TATCCAGAGG--AAA----------TA-GCAAATTT---ATTCACC-TAACAT---TTA-T-AC-AGTAA-AAA--CAGTCTGAGGTATAAT
finalCons : GATACCTTTC-CATACTATGTAAAAAAAA----------TTAACAAGCTTTCGGGCTTCAGAATGACGTAACA--AGAG--AAA-CGCGG----GAAAAC-AT-AGC-AA----C-CGGTAAA---TAGT----TTTCAGAC-TATTTCC--CTAGGGCAAA-TAG-T--TTCCAGACTA-TTTCCCTAGGG---CAAAT-AG-T--TCACAAACTATT-TCA-CGAGT-A--GCGT-------TATCCAGAGG--AAA----------TA-GCAAATTT---ATTCACC-TAACAT---TTA-T-AC-AGTAA-AAA--CAGTCTGAGGTATAAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TATACCAAAGTAAGATAACTTTTTAAGATAAACTACCGATAATGAGGGTTATCAGCCTTTGACGTAACATATT
Unaligned ( gi|17 ): GGTATCTTATTATACCAACGTGAAACCAAGAAAGATAACTTTCC
Alignments
lowQualScore : 1 4444444444 111 2222 1111111111
lowQualScore : 0 3333333333 2 44 666 3 7777 777 3 3 0000 3 555 7777 4 3 3 888 1 2 2 33 666 2 33 2 77 333 3 3 44 44 3 1 3 33 3 44 77777777 1 44 4444444444 3 3 555 1 555 777 4 4 4 4 66
lowQualScore : . .......... . .. ... . .... ... . . .... . ... .... . . . ... . . . .. ... . .. . .. ... . . .. .. . . . .. . .. ........ . .. .......... . . ... . ... ... . . . . ..
lowQualScore : 0 8888888888 5 66 777 3 1111 555 3 3 0000 3 888 1111 8 2 3 555 4 9 9 99 444 4 99 9 66 666 3 3 66 66 3 0 1 55 1 22 99999999 2 22 6666666666 3 3 444 5 000 888 4 4 4 4 99
consensus : GATACCTTTC-CATACTATGTAAAAAAAA----------TTAACAAGCTTTCGGGCTTCAGAATGACGTAACA--AGA-G-AAA-CGCGG----GAAA-ACAT-AGC-AA----C-CGGTAAA---TAGT----TTTCAGAC-TATTTCC--CTAGGGCAAA-TAG-T--TT-CCAGAC--TA-TTTCCCTAGG-GCAAAT-AG-T--TCACA--A-ACTATT-TCA-CGAGT-A--GCG--T-----TATCCAGAGG--AAA----------TA-GCAAATTT---ATTCACC-TAACAT---TTA-T-AC-AGTAA-AAA--CAGTCTGAGGTATAAT
Reference ( family-248 ) : GATACCTTTC-CATACTATGTAAAAAAAA----------TTAACAAGCTTTCGGGCTTCAGAATGACGTAACA--AGA-G-AAA-CGCGG----GAAA-ACAT-AGC-AA----C-CGGTAAA---TAGT----TTTCAGAC-TATTTCC--CTAGGGCAAA-TAG-T--TT-CCAGAC--TA-TTTCCCTAGG-GCAAAT-AG-T--TCACA--A-ACTATT-TCA-CGAGT-A--GCG--T-----TATCCAGAGG--AAA----------TA-GCAAATTT---ATTCACC-TAACAT---TTA-T-AC-AGTAA-AAA--CAGTCTGAGGTATAAT
gi|1 : A--AAA-GTAAA-CGCGG----GAAA-A--T-AAA-AA----A-GAGTAAA---GAGT----TT-----C-TAGCTCG--CTGGGACAAA-TGG-T--TC---------------------------AC-AG-T--TCACA--A-ACTATT-TCA-CGAG----------------TATCCGGAGG--AAA----------TA-GCAAATTT---ATT
gi|10 : caaagtgaaagcaagagagatagcttttcatactatttaaaaaagtgtaataacttacatgtgcgaggggtgctgtcgtttgataaactgtcagcaataagagttcggactttaagtaccatattggataacactagaaatattccgaaAA-TAG-T--TT-C-AGAC--TA-TT--CCTAGG--CAA-T-G-----TCACA--A-----CT-TC--CTAGTTA--GCGCAT-----TATCCAGAGG---AA----------TT-TCAA--TT---A-TCACC-TAATATGCATCAGT-AC-AGTAA-AAttacaaactttt
gi|11 : gaaacaggaagatagttctttggtaagccccaattgagagttatcgaacttggtaacagtattcatacaatattattccgaaaaaagaaacgggaatataaatagtAAAA--AGA---AAA-CGCTG----GAAA-AC-T-AGC-GA----C-AGGTAAA---TAGT----TTCCATAC-ca
gi|11 : ccaaagtgaaaccaggaaagatagcttttcgtaagctacaggtaattagagttattgaacgttgacataacatattccgGGTAAA-TAG-T--TT-CCATACAATA-TTT--CTAGA-GCAAAT-AG-T--TCAAA--A-ACTATT-TCA-CGAGT-A--GCG--T-----TATCCAGAGA--AAA----------TA-GCAAATTT---ATTTACaatatttctagagcaaatagttcaaaaactatttcacgagtagcgttatccagagaaaatagcaaatttatttac
gi|12 : ccaaagtgaaaccaggaaagatagcttttcgtaagctacaggtaattagagttattgaacgttgacataacatattccgaaaaagaaaacgctggaaaactagcgacaGATACCTTTC-CATACTATGTAAAAAAAA----------TTAACAAGCTTTCGGGCTTCAGAATGACGTAACA--AGA-G-AAA-CGCGG----GAAA-ATAT-AGC-AATTTTC-CGGTAAA---TAGT----TTTCAGAC-TATTTCC--CTAGGGCAA
gi|13 : caaagttaaaccaagaaaA--AGA---AAA-TGCTG----GAAA-ACAT-AGC-AA----C-CAGTGAA---TAGT----TTCCAGAC-TATTTCC--CTCGGGCAAA-TAG-T--TC-ACAAAC--TA-TTTC
gi|15 : tattagagttatcagactttcacgcaacatatttgataacaccagagatattctgataAGT-A--GCG--T-----TATCCAGAGA--AAA----------TA-GCAAATCT---ATTCATC-TAACAT---TTA-T-AC-AGTAA-AAA--CAGTGTGAGGTAatgagt
gi|16 : -TCA-TGTGT-A--GCA--T-----TATTCAGGGG--AAA----------TA-GCAA-------------------AT---TTA-T-AT-AGTAA-AAA--CAGTCTGAAGTAT
gi|18 : T---ATTCACC-TAACAT---TTA-T-AC-CGTAA-AAA--CAGTCTGAGGTAT
gi|2 : gCGTAACA--TTA-G-TAA-CGTGG----GAAA--TATCAGCGAA----C-CGGTAAA---TAGT----T------------------------------G-T--CT-CAGGAC--TAATTTCCCTAGGAGCAAAG-AG-TAGTTACA--A-ACTAGT-TCATCGAGT-ATTGCA--CGCAAATAT-TAGCGGAAAAA----------TA-GCAAATTCCTGATGCACTGTAACAT---TTA-T-ATAAGTAACAAAACCAGTCTGAGGTATAATta
gi|3 : aaaaaaaaaagaaattaaacaggcgggtaatcatcaactgacaaatcaagatgataactcgaacattttcagtctacgtcGATACCTTTC-CATAACATGTAAAAAAAAAAAAAAAAAATTAACAAGCTTTCGGGCTTCAGAATGACGTAACAAGAGA-T-ATA-CTCCT----AAAA-GTA------AA----CGCGGGAAAATATAG--------CAA-------TC-------GGTA---TAGAT--TT-TCAGAC--TA-TTTCCCTAGG-GCAAAT-AGTT--TCACA--A-ACTATTATC--TGGGT-A--G-G--T-----TTTTCAG-GG--GAA----------TA-GCAAATTT---ATTCACG-TAACAT---TTA-TCAT-AGTGG-AAA--CAGTCTGAGGTTTAATa
gi|4 : caaagttaaaccaagaaaGATACCTTTCACATACTATGTAAAAAAAA----------TTAA-AAGCTTTCGGGCTTCAGAATGACGTAACA--AGA-G-AAA-CGCGG----GAAA-TAAT-AGC-AATTTTC-CGGTAAA---TAGT----TTTCAGAC-TATTTCC--CTAGGGCAAAATAG-T--TT-TCAGAC---A-TTTCCCTATG-GCAAATTAG-T--TCACA--A-ACTATT-TCA-TGAGT-A--GCG--T-----TATTCAGGGG--AAA----------TA-GCAATTTT---ATTCACG-TAACAT---TTA-T-AT-AGTAA-AAA--CAGTCTGAGGTATAAT
gi|5 : A--AGG-A-AAA-CACGG----GAAA-ACAT-AGC-AT----C-AGGTAAA---TAGT----TTTCAGAC-CATTTCC--CTAGAACAAA-TAG-T--T---CA--------------------TAAAT-AG-T--TCACA--A-A---------------------G--T-----TATCCAGAGG--AA--------------------TT---A-TCA-T-TAACGT---T---T-AC-GGT-A-AAA--CAGTATGAGGTATAAT
gi|6 : tttcattataatccgcaaactaccgggaattagagttatcggacatttgataacacttgatattttccgaaAAAA--AGA---AAA-CACGG----GAAA-ACAT-AGC-AA----C-CGATAAA---GAAT----TTCCAAAC-TATTTCT--CTAGGGCAAA-TAG-T--TC-ATAAAC--TA-TTTCACCAGaataaaacatattcacctccatgtgtct
gi|6 : gccaaagtgaaaccaagaaacttagcttttcatgacagataatattaagattatcggactttgacgtaactttgttgctaacactagatatattctgAAA-GAA-T--TT-CCAAAC--TA-TTTCTCTAGG-GCAAAT-AG-T--TCATA--A-ACTATT-TCA-CCAGT-A--GCG--T-----TTTCCAGGGG--GGGGGGGGGGTGTTA-GCAAATTT---ACTAACtagcgttttccaggggggggggggggtgttagcaaatttactaac
gi|7 : gccaaagtgaaaccaagaaacttagcttttcatgacagataatattaagattatcggactttgacgtaactttgttgctaacactagatatattctgaaaaagaaaacacgggaaaacatagcaaccgat--AGA---AAA-CGCGG----GAAA--CAT-AGC-AA----C-CGGTAAA---TAGT----TTTCAG-C-TATTTCT--GTATGGCAAA-TAA-T--TCACGATAT--CA-TTTCACGATA-GCAA---AG-T--CCAGAGGA-AATATG-TCA-
gi|7 : tttattacgcgccgaaagaaactatccagttaattgagagttatcgaacttcgacgtaacataattatatttgataacacaagagttattccgaaagcGGTAAA-TAG-T--TT-TCAG-C--TA-TTTCTGTATG-GCAAAT-AA-T--TCACG--ATATCATT-TCA-CGA-T-A--GCA--A-----AGTCCAGAGG--AAA----------TATGTCAATTT---ATTCATC-GAACAatttattcatcgaacacattgt
gi|8 : tttattacgcgccgaaagaaactatccagttaattgagagttatcgaacttcgacgtaacataattatatttgataacacaagagttattccgaaagcagaaaacgcgggaaacatagcaaccGATACCTTTC-CATACTATGTAAAAAAAA----------TTAACAAGCTTTCGGGCTTCAGAATGACGT-ACA--AGAGG-AAA-C-CGGAGGAGAAATATAT-AGC-AATTT-C-CAGTAAA---TAGTATAGTTTCAGATACATTTCTCACTA-GGCAAA-TAG-TGATT-TCAGAC--TA-TTT--ATA-G-GCAAAT-AG-T--TCACA--A-ACTATT-TCA-TGAGT-A--GCG--T-----TATTCAGGGG--AAcattgt
gi|9 : aaagttaaaccaagaaaA--AGA-G-AAAACGCGG----GAAA-ACAT-TGC-AA----T-C--------------------CAGAC-TATTTTC--CTAGGGCAAA-TAA-T--T
gi|9 : ttatatcaaagtagaaaccaagaaattagaattatcggattttgatgtatctttgataacgccagagatattccgaT-CCAGAC--TA-TTTTCCTAGG-GCAAAT-AA-T--TCACA--A-ATTATT-TCA-CGAGT-A--GCG--T-----TATCCAAAGG--AAA----------TA-GCAAATTT---ATTTATC-TAACAT---TT--T-AT-AATAA-AAA--TAATcacaaattatttcacgagtagcgttatccaaaggaaatagcaaatttatttatctaacattttataataaaaataat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TATACCAAAGTAAGATAACTTTTTAAGATAAACTACCGATAATGAGGGTTATCAGCCTTTGACGTAACATATT
Unaligned ( gi|17 ): GGTATCTTATTATACCAACGTGAAACCAAGAAAGATAACTTTCC