lowQualScore : 111 111 333333333 1111 11111 1111 11111111 111111111111 11111
lowQualScore : 0 333 8 88 444 555555555 4444 6 99 1 55 6 3 1 5 0 55 4 4 66 66 4 4 11111 6666 3333 99 55 88888888 4 222222222222 4 0 11111
lowQualScore : . ... . .. ... ......... .... . .. . .. . . . . . .. . . .. .. . . ..... .... .... .. .. ........ . ............ . . .....
lowQualScore : 8 666 0 66 000 888888888 2222 7 22 0 00 7 2 4 7 4 99 4 4 11 11 4 4 11111 2222 9999 55 55 99999999 0 555555555555 0 8 11111
consensus : GTCTAGTCTTATGAT-TTGC-ATA---ATA---------TT----TTACCTGATAT-GGATA--TCTGCAT-TTGAATTTG-TATTTC-ATTA-T-TC--T--T-GTCAT-T-----TTA-A-TGTGC----TATT--AATA--TCA--C-----C-C------T-----GTAT-CATTGATTTTTAC-----CCTGAATAAAT
Reference ( gi|5 ) : GTCTAGTCTTGTGAT-TTGC-ATA---ATA---------TT----TTACCTGATAT-GGATA--TCTGCAT-TTGAATTTA-TATTTT-ATTA-T-TC--T--T-GTCAT-T-----TTA-A-TGTGC----TATT--AATA--TCA--C-----C-C------T-----GTAT-CATTGATTTTTAC-----CCTGAATAAAT
gi|4 : GTCTAGTCTTATAAA-TTGC-ATA---ACA---------TT----TTATCTGATAT-GGATA--TCTGCAT-TTGAATTTG-TATTTT-ATTA-T-TC--T--T-GTCAT-T-----TTA-A-TGTGC----TATT--AATA--TCA--TCCTAGC-C------T-----GTAT-CATTGATTTTTAC-----CATGAATAAAT
gi|3 : tatGTCTAGTCTTATGAT-TTGCTATA---ATGAT-------TT----TTACCTGATAT-GGATATCTCTGCAT-TTG-ATTTA-TTTTTC-ATTA-T-TC--CTAT-GTCAT-T-----TTATT-TGTGCTATGTATT--AATAATTCA--C-----C-C------T-----GT----ATTGATTTTTTA-----CCTGAATAAActatc
gi|1 : tGTCT-GTCTTGT-ATGTTGT-CTACGTATA---------TTATTATTACCTGATATTGGATA--TCT-CAT-T-GAATTTAATATTTT-TTTAAT-TC--T--TTGTCAT-T-----TTA-A-TGTGCC---TATTTTAATA--TCA--C-----C-C------T-----GTATCCATTGATTTTTA------CCTGAATGAAgtctac
gi|6 : gttaatcGTCTACCCCT---AT-TT----TA---AAA---------TT----AGACTTGATAT-GGATA--T---------------A-TATTTC-AATA-T-TC--T--T-GTCAT-T-----T-A-A-CATGC----TATT--TATA--TCA--T-----C-C------T-----GCAC-CATTGATTTTTACGGTATCCTGAATAAATatcgatgagggggggggggggggggggggggggggggggttttgaggattaagtaacatatttttgatgatgtaactcttttcactaattaatttgatataggttggcttgtctgttttgctggtattgaaaaaaaattaataataattaataaaaaaaatcacacccccacccaaaaaatacaaaaaaaaaaaaagaagagcgactggactgatactagatt
gi|14 : atGTCTAGTCCCATGAT-TTGC-ATA---ATATTTTAAAATTT----TTACCTGATAT-GGATA--TTTGAAT-TTctat
gi|9 : t---------TT----TTCCCTTATAT-GGATA--TCTGAATCTTGAATTTA-T-TTCG-ATAA-TCTCTAT--T-GTCATGT-----TT------TGA----TATT--AATA--TCA--T-----CGC------T-----GTAT-CA-TGATTTa
gi|10 : AATTTG-TATTTTCATTA-T-TT--T--T-GTCAT-T-----TTA-AATGTGC----TATT--AATA--TCA--T-----C-C------TAGCCTGTAT-CATTGATTTTTAC-----CCTGAATAAAT
gi|8 : aAATTTG-TATTTC-ATTA-T-TC--T--T-GTCAT-TTTAAATTA-A-TGTGC----TATTG-AATA--TCA--C-----C-CTAGCCTT-----GTAT-CA-TGATTTTTAC-----CCTGAATAAATctatc
gi|11 : ATTTC-ATTA-T-TC--T--T-GTCTT-T-----TTC-A-TATGC----TATT--AATA--TCA--C-----C-C------T-----GTAT-CATTGATTCTTAC-----CCTGAATAAATctatcta
gi|12 : -ATTA-T-TC--T--T-GTCAT-T-----TTG-A-TATGC----TATT--GATA--TCA--C-----C-C------T-----GTAT-CATTGACTTTTAC-----CTTGAATAAATctacta
gi|15 : TT--AATA--TCAGCCTAG--C-C------T-----GTAT-CATTGATTTTTAC-----CCTGAAAAAActac
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|2 ): GATGAGGATTAAGTAACATATTTTTGATGATGTGGACTCTTTTCACTAATGTAATTTGATATTAGGTTGGCTTGTCTGTTTTCTGGGTAATTGAAAAAAATAATAATAATAATAAAAAAAATCACACCCCCACCCCAAAAAATACAAAAAAAAAAAAAGAAGAGACGACTGGACTGATACTAATTT
Unaligned ( gi|7 ): TGCAATGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCATTCTGCCATGAAGACTGACAACAATTCATAAGTAACCTAGTTTACTTTTATTTATCATAT
Unaligned ( gi|13 ): AATAATCGTAAATCTGTTTTGTGTTTTCCCCCTTAATTAAATGTGTGATATTTTCAGTTAGCCCA
Unaligned ( gi|16 ): TCCCCCTTGAACCATTATTCATGTAGATACAGGCTCA
Alignments
lowQualScore : 1111111 333333333 11111 1111 11111111 111111111111 11111
lowQualScore : 99 1 6666666 000000000 5 5 77 11 5 1 0 666 4 4 4 4 55 55 4 4 00000 4 4 2222 88 55 66666666 3 000000000000 3 00000
lowQualScore : .. . ....... ......... . . .. .. . . . ... . . . . .. .. . . ..... . . .... .. .. ........ . ............ . .....
lowQualScore : 22 0 0000000 777777777 7 7 99 44 7 4 1 222 4 0 0 0 55 55 0 0 00000 0 0 5555 66 00 33333333 6 555555555555 6 00000
consensus : GTCTAGTCTT--ATGATTT----GC-ATAATA---------TT-TTACCTGATAT-GGATA--TCTGCAT-TTGAATTTG-TATTT-C-ATTA-T-TC--T--T-GTCAT-T-----TTA-A-TGTGC----TATT--AATA--TCA--C-----C-C------T-----GTAT-CATTGATTTTTAC-----CCTGAATAAAT
Reference ( family-2454 ) : GTCTAGTCTT--ATGATTT----GC-ATAATA---------TT-TTACCTGATAT-GGATA--TCTGCAT-TTGAATTTG-TATTT-C-ATTA-T-TC--T--T-GTCAT-T-----TTA-A-TGTGC----TATT--AATA--TCA--C-----C-C------T-----GTAT-CATTGATTTTTAC-----CCTGAATAAAT
gi|1 : GTCT-GTCTTGTATGTTGTCTACGT-ATATTA---------TTATTACCTGATATTGGATA--TCT-CAT-T-GAATTTAATATTT-T-TTTAAT-TC--T--TTGTCAT-T-----TTA-A-TGTGCC---TATTTTAATA--TCA--C-----C-C------T-----GTATCCATTGATTTTTA------CCTGAATGAA
gi|10 : gttaatcAATTTG-TATTTTC-ATTA-T-TT--T--T-GTCAT-T-----TTA-AATGTGC----TATT--AATA--TCA--T-----C-C------TAGCCTGTAT-CATTGATTTTTAC-----CCTGAATAAATatcgatgagggggggggggggggggggggggggggggggttttgaggattaagtaacatatttttgatgatgtaactcttttcactaattaatttgatataggttggcttgtctgttttgctggtattgaaaaaaaattaataataattaataaaaaaaatcacacccccacccaaaaaatacaaaaaaaaaaaaagaagagcgactggactgatactagatt
gi|11 : aATTT-C-ATTA-T-TC--T--T-GTCTT-T-----TTC-A-TATGC----TATT--AATA--TCA--C-----C-C------T-----GTAT-CATTGATTCTTAC-----CCTGAATAAATctatc
gi|12 : -ATTA-T-TC--T--T-GTCAT-T-----TTG-A-TATGC----TATT--GATA--TCA--C-----C-C------T-----GTAT-CATTGACTTTTAC-----CTTGAATAAATctacta
gi|14 : GTCTAGTCCC--ATGATTT----GC-ATAATATTTTAAAATTT-TTACCTGATAT-GGATA--TTTGAAT-TTctac
gi|15 : tTT--AATA--TCAGCCTAG--C-C------T-----GTAT-CATTGATTTTTAC-----CCTGAAAAAAa
gi|3 : GTCTAGTCTT--ATGATTT----GCTATAATGAT-------TT-TTACCTGATAT-GGATATCTCTGCAT-TTG-ATTTA-TTTTT-C-ATTA-T-TC--CTAT-GTCAT-T-----TTATT-TGTGCTATGTATT--AATAATTCA--C-----C-C------T-----GT----ATTGATTTTTTA-----CCTGAATAAAaaatatatctatc
gi|4 : tGTCTAGTCTT--ATAAATT----GC-ATAACA---------TT-TTATCTGATAT-GGATA--TCTGCAT-TTGAATTTG-TATTT-T-ATTA-T-TC--T--T-GTCAT-T-----TTA-A-TGTGC----TATT--AATA--TCA--TCCTAGC-C------T-----GTAT-CATTGATTTTTAC-----CATGAATAAATgtctac
gi|5 : tatGTCTAGTCTT--GTGATTT----GC-ATAATA---------TT-TTACCTGATAT-GGATA--TCTGCAT-TTGAATTTA-TATTT-T-ATTA-T-TC--T--T-GTCAT-T-----TTA-A-TGTGC----TATT--AATA--TCA--C-----C-C------T-----GTAT-CATTGATTTTTAC-----CCTGAATAAATctatc
gi|6 : GTCTACCCCT--AT---TT--------TAAAA---------TT-AGACTTGATAT-GGATA--T---------------A-TATTT-C-AATA-T-TC--T--T-GTCAT-T-----T-A-A-CATGC----TATT--TATA--TCA--T-----C-C------T-----GCAC-CATTGATTTTTACGGTATCCTGAATAAAT
gi|8 : atAATTTG-TATTT-C-ATTA-T-TC--T--T-GTCAT-TTTAAATTA-A-TGTGC----TATTG-AATA--TCA--C-----C-CTAGCCTT-----GTAT-CA-TGATTTTTAC-----CCTGAATAAATctat
gi|9 : ---------TT-TTCCCTTATAT-GGATA--TCTGAATCTTGAATT---TATTT-CGATAA-TCTCTAT--T-GTCATGT-----TT------TGA----TATT--AATA--TCA--T-----CGC------T-----GTAT-CA-TGATTTctatcta
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): GATGAGGATTAAGTAACATATTTTTGATGATGTGGACTCTTTTCACTAATGTAATTTGATATTAGGTTGGCTTGTCTGTTTTCTGGGTAATTGAAAAAAATAATAATAATAATAAAAAAAATCACACCCCCACCCCAAAAAATACAAAAAAAAAAAAAGAAGAGACGACTGGACTGATACTAATTT
Unaligned ( gi|7 ): TGCAATGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCATTCTGCCATGAAGACTGACAACAATTCATAAGTAACCTAGTTTACTTTTATTTATCATAT
Unaligned ( gi|13 ): AATAATCGTAAATCTGTTTTGTGTTTTCCCCCTTAATTAAATGTGTGATATTTTCAGTTAGCCCA
Unaligned ( gi|16 ): TCCCCCTTGAACCATTATTCATGTAGATACAGGCTCA
Alignments
lowQualScore : 1111111 333333333 11111 1111 11111111 111111111111 11111
lowQualScore : 99 1 6666666 000000000 5 5 77 11 5 1 0 666 4 4 4 4 55 55 4 4 00000 4 4 2222 88 55 66666666 3 000000000000 3 00000
lowQualScore : .. . ....... ......... . . .. .. . . . ... . . . . .. .. . . ..... . . .... .. .. ........ . ............ . .....
lowQualScore : 22 0 0000000 777777777 7 7 99 44 7 4 1 222 4 0 0 0 55 55 0 0 00000 0 0 5555 66 00 33333333 6 555555555555 6 00000
consensus : GTCTAGTCTT--ATGATTT----GC-ATAATA---------TT-TTACCTGATAT-GGATA--TCTGCAT-TTGAATTTG-TATTT-C-ATTA-T-TC--T--T-GTCAT-T-----TTA-A-TGTGC----TATT--AATA--TCA--C-----C-C------T-----GTAT-CATTGATTTTTAC-----CCTGAATAAAT
Reference ( family-2454 ) : GTCTAGTCTT--ATGATTT----GC-ATAATA---------TT-TTACCTGATAT-GGATA--TCTGCAT-TTGAATTTG-TATTT-C-ATTA-T-TC--T--T-GTCAT-T-----TTA-A-TGTGC----TATT--AATA--TCA--C-----C-C------T-----GTAT-CATTGATTTTTAC-----CCTGAATAAAT
gi|1 : GTCT-GTCTTGTATGTTGTCTACGT-ATATTA---------TTATTACCTGATATTGGATA--TCT-CAT-T-GAATTTAATATTT-T-TTTAAT-TC--T--TTGTCAT-T-----TTA-A-TGTGCC---TATTTTAATA--TCA--C-----C-C------T-----GTATCCATTGATTTTTA------CCTGAATGAA
gi|10 : gttaatcAATTTG-TATTTTC-ATTA-T-TT--T--T-GTCAT-T-----TTA-AATGTGC----TATT--AATA--TCA--T-----C-C------TAGCCTGTAT-CATTGATTTTTAC-----CCTGAATAAATatcgatgagggggggggggggggggggggggggggggggttttgaggattaagtaacatatttttgatgatgtaactcttttcactaattaatttgatataggttggcttgtctgttttgctggtattgaaaaaaaattaataataattaataaaaaaaatcacacccccacccaaaaaatacaaaaaaaaaaaaagaagagcgactggactgatactagatt
gi|11 : aATTT-C-ATTA-T-TC--T--T-GTCTT-T-----TTC-A-TATGC----TATT--AATA--TCA--C-----C-C------T-----GTAT-CATTGATTCTTAC-----CCTGAATAAATctatc
gi|12 : -ATTA-T-TC--T--T-GTCAT-T-----TTG-A-TATGC----TATT--GATA--TCA--C-----C-C------T-----GTAT-CATTGACTTTTAC-----CTTGAATAAATctacta
gi|14 : GTCTAGTCCC--ATGATTT----GC-ATAATATTTTAAAATTT-TTACCTGATAT-GGATA--TTTGAAT-TTctac
gi|15 : tTT--AATA--TCAGCCTAG--C-C------T-----GTAT-CATTGATTTTTAC-----CCTGAAAAAAa
gi|3 : GTCTAGTCTT--ATGATTT----GCTATAATGAT-------TT-TTACCTGATAT-GGATATCTCTGCAT-TTG-ATTTA-TTTTT-C-ATTA-T-TC--CTAT-GTCAT-T-----TTATT-TGTGCTATGTATT--AATAATTCA--C-----C-C------T-----GT----ATTGATTTTTTA-----CCTGAATAAAaaatatatctatc
gi|4 : tGTCTAGTCTT--ATAAATT----GC-ATAACA---------TT-TTATCTGATAT-GGATA--TCTGCAT-TTGAATTTG-TATTT-T-ATTA-T-TC--T--T-GTCAT-T-----TTA-A-TGTGC----TATT--AATA--TCA--TCCTAGC-C------T-----GTAT-CATTGATTTTTAC-----CATGAATAAATgtctac
gi|5 : tatGTCTAGTCTT--GTGATTT----GC-ATAATA---------TT-TTACCTGATAT-GGATA--TCTGCAT-TTGAATTTA-TATTT-T-ATTA-T-TC--T--T-GTCAT-T-----TTA-A-TGTGC----TATT--AATA--TCA--C-----C-C------T-----GTAT-CATTGATTTTTAC-----CCTGAATAAATctatc
gi|6 : GTCTACCCCT--AT---TT--------TAAAA---------TT-AGACTTGATAT-GGATA--T---------------A-TATTT-C-AATA-T-TC--T--T-GTCAT-T-----T-A-A-CATGC----TATT--TATA--TCA--T-----C-C------T-----GCAC-CATTGATTTTTACGGTATCCTGAATAAAT
gi|8 : atAATTTG-TATTT-C-ATTA-T-TC--T--T-GTCAT-TTTAAATTA-A-TGTGC----TATTG-AATA--TCA--C-----C-CTAGCCTT-----GTAT-CA-TGATTTTTAC-----CCTGAATAAATctat
gi|9 : ---------TT-TTCCCTTATAT-GGATA--TCTGAATCTTGAATT---TATTT-CGATAA-TCTCTAT--T-GTCATGT-----TT------TGA----TATT--AATA--TCA--T-----CGC------T-----GTAT-CA-TGATTTctatcta
blockSeqs : . G GCT TTTTAAAAT . . TC GA C T TG T G . C TA TA . G TTAAA T A TATG G AT GCCTAG G TAGCCTT . GGTAT
blockSeqs : . G GC AT . . . GC . T TA . . . . . . . . . . . . . . TCCTAG . TAGCCT . .
blockSeqs : . A GC . . . . GC . T TG . . . . . . . . . . . . . . T . T . .
blockSeqs : . G GC . . . . GC . T TA . . . . . . . . . . . . . . C . T . .
blockSeqs : . . . . . . . GA . T TG . . . . . . . . . . . . . . C . T . .
blockSeqs : . . . . . . . A . . . . . . . . . . . . . . C . T . .
blockSeqs : . . . . . . . . . . . . . . . C . T . .
blockSeqs : . . . . . . . . . . . . . . T . T . .
blockSeqs : . . . . . . . . . . . . . C . T . .
blockSeqs : . . T . T .
blockSeqCons : ** GC***** GC TG* **** **
originalCons : GTCTAGTCTT--ATGATTT----GC-ATAATA---------TT-TTACCTGATAT-GGATA--TCTGCAT-TTGAATTTG-TATTT-C-ATTA-T-TC--T--T-GTCAT-T-----TTA-A-TGTGC----TATT--AATA--TCA--C-----C-C------T-----GTAT-CATTGATTTTTAC-----CCTGAATAAAT
finalCons : GTCTAGTCTT--ATGATTTGC-----ATAATA---------TT-TTACCTGATAT-GGATA--TCTGCAT-TTGAATTTG-TATTT-C-ATTA-T-TC--T--T-GTCAT-T-----TTA-A-TGTGC----TATT--AATA--TCA--C-----C-C------T-----GTAT-CATTGATTTTTAC-----CCTGAATAAAT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): GATGAGGATTAAGTAACATATTTTTGATGATGTGGACTCTTTTCACTAATGTAATTTGATATTAGGTTGGCTTGTCTGTTTTCTGGGTAATTGAAAAAAATAATAATAATAATAAAAAAAATCACACCCCCACCCCAAAAAATACAAAAAAAAAAAAAGAAGAGACGACTGGACTGATACTAATTT
Unaligned ( gi|7 ): TGCAATGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCATTCTGCCATGAAGACTGACAACAATTCATAAGTAACCTAGTTTACTTTTATTTATCATAT
Unaligned ( gi|13 ): AATAATCGTAAATCTGTTTTGTGTTTTCCCCCTTAATTAAATGTGTGATATTTTCAGTTAGCCCA
Unaligned ( gi|16 ): TCCCCCTTGAACCATTATTCATGTAGATACAGGCTCA
Alignments
lowQualScore : 1111111 333333333 11111 1111 11111111 111111111111 11111
lowQualScore : 99 1 6666666 000000000 5 5 77 11 5 1 0 666 4 4 4 4 55 55 4 4 00000 4 4 2222 88 55 66666666 3 000000000000 3 00000
lowQualScore : .. . ....... ......... . . .. .. . . . ... . . . . .. .. . . ..... . . .... .. .. ........ . ............ . .....
lowQualScore : 22 0 0000000 777777777 7 7 99 44 7 4 1 222 4 0 0 0 55 55 0 0 00000 0 0 5555 66 00 33333333 6 555555555555 6 00000
consensus : GTCTAGTCTT--ATGATTT----GC-ATAATA---------TT-TTACCTGATAT-GGATA--TCTGCAT-TTGAATTTG-TATTT-C-ATTA-T-TC--T--T-GTCAT-T-----TTA-A-TGTGC----TATT--AATA--TCA--C-----C-C------T-----GTAT-CATTGATTTTTAC-----CCTGAATAAAT
Reference ( family-2454 ) : GTCTAGTCTT--ATGATTT----GC-ATAATA---------TT-TTACCTGATAT-GGATA--TCTGCAT-TTGAATTTG-TATTT-C-ATTA-T-TC--T--T-GTCAT-T-----TTA-A-TGTGC----TATT--AATA--TCA--C-----C-C------T-----GTAT-CATTGATTTTTAC-----CCTGAATAAAT
gi|1 : GTCT-GTCTTGTATGTTGTCTACGT-ATATTA---------TTATTACCTGATATTGGATA--TCT-CAT-T-GAATTTAATATTT-T-TTTAAT-TC--T--TTGTCAT-T-----TTA-A-TGTGCC---TATTTTAATA--TCA--C-----C-C------T-----GTATCCATTGATTTTTA------CCTGAATGAA
gi|10 : gttaatcAATTTG-TATTTTC-ATTA-T-TT--T--T-GTCAT-T-----TTA-AATGTGC----TATT--AATA--TCA--T-----C-C------TAGCCTGTAT-CATTGATTTTTAC-----CCTGAATAAATatcgatgagggggggggggggggggggggggggggggggttttgaggattaagtaacatatttttgatgatgtaactcttttcactaattaatttgatataggttggcttgtctgttttgctggtattgaaaaaaaattaataataattaataaaaaaaatcacacccccacccaaaaaatacaaaaaaaaaaaaagaagagcgactggactgatactagatt
gi|11 : aATTT-C-ATTA-T-TC--T--T-GTCTT-T-----TTC-A-TATGC----TATT--AATA--TCA--C-----C-C------T-----GTAT-CATTGATTCTTAC-----CCTGAATAAATctatc
gi|12 : -ATTA-T-TC--T--T-GTCAT-T-----TTG-A-TATGC----TATT--GATA--TCA--C-----C-C------T-----GTAT-CATTGACTTTTAC-----CTTGAATAAATctacta
gi|14 : GTCTAGTCCC--ATGATTT----GC-ATAATATTTTAAAATTT-TTACCTGATAT-GGATA--TTTGAAT-TTctac
gi|15 : tTT--AATA--TCAGCCTAG--C-C------T-----GTAT-CATTGATTTTTAC-----CCTGAAAAAAa
gi|3 : GTCTAGTCTT--ATGATTT----GCTATAATGAT-------TT-TTACCTGATAT-GGATATCTCTGCAT-TTG-ATTTA-TTTTT-C-ATTA-T-TC--CTAT-GTCAT-T-----TTATT-TGTGCTATGTATT--AATAATTCA--C-----C-C------T-----GT----ATTGATTTTTTA-----CCTGAATAAAaaatatatctatc
gi|4 : tGTCTAGTCTT--ATAAATT----GC-ATAACA---------TT-TTATCTGATAT-GGATA--TCTGCAT-TTGAATTTG-TATTT-T-ATTA-T-TC--T--T-GTCAT-T-----TTA-A-TGTGC----TATT--AATA--TCA--TCCTAGC-C------T-----GTAT-CATTGATTTTTAC-----CATGAATAAATgtctac
gi|5 : tatGTCTAGTCTT--GTGATTT----GC-ATAATA---------TT-TTACCTGATAT-GGATA--TCTGCAT-TTGAATTTA-TATTT-T-ATTA-T-TC--T--T-GTCAT-T-----TTA-A-TGTGC----TATT--AATA--TCA--C-----C-C------T-----GTAT-CATTGATTTTTAC-----CCTGAATAAATctatc
gi|6 : GTCTACCCCT--AT---TT--------TAAAA---------TT-AGACTTGATAT-GGATA--T---------------A-TATTT-C-AATA-T-TC--T--T-GTCAT-T-----T-A-A-CATGC----TATT--TATA--TCA--T-----C-C------T-----GCAC-CATTGATTTTTACGGTATCCTGAATAAAT
gi|8 : atAATTTG-TATTT-C-ATTA-T-TC--T--T-GTCAT-TTTAAATTA-A-TGTGC----TATTG-AATA--TCA--C-----C-CTAGCCTT-----GTAT-CA-TGATTTTTAC-----CCTGAATAAATctat
gi|9 : ---------TT-TTCCCTTATAT-GGATA--TCTGAATCTTGAATT---TATTT-CGATAA-TCTCTAT--T-GTCATGT-----TT------TGA----TATT--AATA--TCA--T-----CGC------T-----GTAT-CA-TGATTTctatcta
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): GATGAGGATTAAGTAACATATTTTTGATGATGTGGACTCTTTTCACTAATGTAATTTGATATTAGGTTGGCTTGTCTGTTTTCTGGGTAATTGAAAAAAATAATAATAATAATAAAAAAAATCACACCCCCACCCCAAAAAATACAAAAAAAAAAAAAGAAGAGACGACTGGACTGATACTAATTT
Unaligned ( gi|7 ): TGCAATGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCATTCTGCCATGAAGACTGACAACAATTCATAAGTAACCTAGTTTACTTTTATTTATCATAT
Unaligned ( gi|13 ): AATAATCGTAAATCTGTTTTGTGTTTTCCCCCTTAATTAAATGTGTGATATTTTCAGTTAGCCCA
Unaligned ( gi|16 ): TCCCCCTTGAACCATTATTCATGTAGATACAGGCTCA