lowQualScore : 222 1 1 1 444 1 55555555 1 1
lowQualScore : ... . . . ... . ........ . .
lowQualScore : 888 1 5 5 111 5 44444444 5 8
consensus : GGGGGGGGG---GGGGACA-TATG-TTTTT---G-CCTC--------CAAA-AACAAAC-TTTAAT
Reference ( gi|6 ) : GGGGGGGGG---GGGGACA-TATG-TTTTT---G-CCTC--------CAAA-AACAAAC-TTTAAT
gi|2 : GGGGGGGGG---GGCGGCATTATGTTTTTT---G-CCTC--------CAAA-AACAAACGTTTA
gi|4 : agGGGGAGGG---CGGGGCA-T--G-TTTTT---G-CCTC--------CAAA-AACAAAC-TTTAAT
gi|25 : catgaGGGGGAGG---GCAGA-A-TATG-TTTT---------C--------CAAA-A-CAAAC-TTTAAT
gi|17 : aGGGGGGG---GGGGAC---ATG-TTTTT---A-CAAC--------CAAA-AACAAAC-TTT
gi|14 : GGGGGG---GGGGA-A-TATG--TTTT---A-CCTC--------CAAA-TACAAAC-TTTGATtaa
gi|3 : GGGGG---GGAGACA-TATG-TTTTT---G-CCTC--------AGAA-AACAAta
gi|11 : gcatGGGG---GGAGACA-TATG-TTTTT---G-CCTC--------CAAA-AACAAAC-TTTAAtttctacttgc
gi|21 : cacaGGGG---GGGGAC---ATG-TTTTT---GCCCTC--------CAAA-AACAAAC-TTTAAT
gi|23 : cGGGG---GGAGACA-TATG-TTTTTA--G-CCTC--------CAAA-AAC
gi|19 : cagcgcacGGGGCCAGGAGAGA-CATC-TTTTT---G-CCTC--------CAAA-AACAAAC-TTT
gi|28 : GGGG---GGAGACA-TATG-TTTTT---G-CCTC--------CAc
gi|9 : accggacGGG---GGAGACA-TATG-TTTTT---G-CCTC--------CAAA-AGCAAAC-TTTAAT
gi|20 : cacaGGG---GGGAACA-TATG-TTTTT---G-CCTC--------CAAA-AACAAAC-TTt
gi|7 : agcacGGG---GGAGACA-AATG-TTTTT---G-CCTC--------CAAA-ATCAAAC-TTTAAT
gi|13 : cacaGGG---GGAGACA-TATG-TTTT----G-CCCC--------CAAA-GACAAAT-TTTAATt
gi|27 : cataGGG---GGGGACA-TATG-TTTTT---G-CCTC--------CAAA-AAt
gi|8 : ctgacGGG---GGAAACA-TATG-TTTTT---G-TCTC--------CTAA-TACAAAC-TTTAA
gi|16 : cagcacGG---GGGG----TATG-TTTTT---G-CCTC--------CAAA-AACAAAC-TTTAAT
gi|10 : caggctGG---GGGGAAA-CACG-TTTTT---G-CCTC--------CAAA-AACAAAT-TTTAAT
gi|24 : gcatGG---GAGGAGA-AATG-TTTTT---G-CATC--------CAAA-AACAAAT-TTTAATt
gi|15 : GG---GGGG----TATG-TTTTT---G-C-TC--------CACA-AACAAAC-TTTAAT
gi|18 : aggctGG---GGGAACA-TATG-TCTTTTTAG-CCTC--------CAAA-AACtt
gi|22 : gacagcgcacG---GGGGAGA-CATG-TTTTT---G-CCAC--------CAAC-AACAAAC--TTAAT
gi|1 : ac---GGGGAGA-CATG-TTTTT---G-CCTCCATTAGTTCAAA-AACAAAC-TTTAATtt
gi|12 : cagcacaa---GGGAAGA-CATG-TTTTT---G-CCTT--------TATA-AACAAAC-TTTAATt
gi|5 : agcacaGGGGCA-TGCG-TTTT----G-C-TC--------CAAAGAACAA-C-TTTAATt
gi|26 : ctgacagtgcACT-NATG-TTTTT---G-CCTC--------GAAA-AACAAAC-TTTAATtat
Alignments
lowQualScore : 222 0 1 1 333 1 55555555 1 1
lowQualScore : ... . . . ... . ........ . .
lowQualScore : 777 7 4 4 999 4 22222222 5 7
consensus : GGGGGGGGG---GGGGACA-TATG-TTTTT---G-CCTC--------CAAA-AACAAAC-TTTAAT
Reference ( family-2451 ) : GGGGGGGGG---GGGGACA-TATG-TTTTT---G-CCTC--------CAAA-AACAAAC-TTTAAT
gi|1 : ---GGGGAGA-CATG-TTTTT---G-CCTCCATTAGTTCAAA-AACAAAC-TTTAAT
gi|10 : cagcacaaGG---GGGGAAA-CACG-TTTTT---G-CCTC--------CAAA-AACAAAT-TTTAATt
gi|11 : gcatGGGG---GGAGACA-TATG-TTTTT---G-CCTC--------CAAA-AACAAAC-TTTAAt
gi|12 : caca---GGGAAGA-CATG-TTTTT---G-CCTT--------TATA-AACAAAC-TTTAAT
gi|13 : agcacaGGG---GGAGACA-TATG-TTTT----G-CCCC--------CAAA-GACAAAT-TTTAATt
gi|14 : cataGGGGGG---GGGGA-A-TATG--TTTT---A-CCTC--------CAAA-TACAAAC-TTTGATt
gi|15 : GG---GGGG----TATG-TTTTT---G-C-TC--------CACA-AACAAAC-TTTAATta
gi|16 : aggctGG---GGGG----TATG-TTTTT---G-CCTC--------CAAA-AACAAAC-TTTAATtt
gi|17 : caggctGGGGGGG---GGGGAC---ATG-TTTTT---A-CAAC--------CAAA-AACAAAC-TTT
gi|18 : GG---GGGAACA-TATG-TCTTTTTAG-CCTC--------CAAA-AACtaa
gi|19 : gacagcgcacGGGGCCAGGAGAGA-CATC-TTTTT---G-CCTC--------CAAA-AACAAAC-TTT
gi|2 : GGGGGGGGG---GGCGGCATTATGTTTTTT---G-CCTC--------CAAA-AACAAACGTTTAc
gi|20 : agGGG---GGGAACA-TATG-TTTTT---G-CCTC--------CAAA-AACAAAC-TT
gi|21 : agcacGGGG---GGGGAC---ATG-TTTTT---GCCCTC--------CAAA-AACAAAC-TTTAAT
gi|22 : cG---GGGGAGA-CATG-TTTTT---G-CCAC--------CAAC-AACAAAC--TTAAT
gi|23 : acGGGG---GGAGACA-TATG-TTTTTA--G-CCTC--------CAAA-AACtt
gi|24 : cagcgcacGG---GAGGAGA-AATG-TTTTT---G-CATC--------CAAA-AACAAAT-TTTAAT
gi|25 : GGGGGAGG---GCAGA-A-TATG-TTTT---------C--------CAAA-A-CAAAC-TTTAAT
gi|26 : aACT-NATG-TTTTT---G-CCTC--------GAAA-AACAAAC-TTTAAT
gi|27 : GGG---GGGGACA-TATG-TTTTT---G-CCTC--------CAAA-AAtca
gi|28 : ctgacGGGG---GGAGACA-TATG-TTTTT---G-CCTC--------CA
gi|3 : accggacGGGGG---GGAGACA-TATG-TTTTT---G-CCTC--------AGAA-AACAA
gi|4 : gcatGGGGAGGG---CGGGGCA-T--G-TTTTT---G-CCTC--------CAAA-AACAAAC-TTTAATtttctacttgc
gi|5 : catgaGGGGCA-TGCG-TTTT----G-C-TC--------CAAAGAACAA-C-TTTAAT
gi|6 : ctgacagtgcGGGGGGGGG---GGGGACA-TATG-TTTTT---G-CCTC--------CAAA-AACAAAC-TTTAATtat
gi|7 : GGG---GGAGACA-AATG-TTTTT---G-CCTC--------CAAA-ATCAAAC-TTTAAT
gi|8 : cacaGGG---GGAAACA-TATG-TTTTT---G-TCTC--------CTAA-TACAAAC-TTTAAt
gi|9 : cagcacGGG---GGAGACA-TATG-TTTTT---G-CCTC--------CAAA-AGCAAAC-TTTAAT
Alignments
lowQualScore : 222 0 1 1 333 1 55555555 1 1
lowQualScore : ... . . . ... . ........ . .
lowQualScore : 777 7 4 4 999 4 22222222 5 7
consensus : GGGGGGGGG---GGGGACA-TATG-TTTTT---G-CCTC--------CAAA-AACAAAC-TTTAAT
Reference ( family-2451 ) : GGGGGGGGG---GGGGACA-TATG-TTTTT---G-CCTC--------CAAA-AACAAAC-TTTAAT
gi|1 : ---GGGGAGA-CATG-TTTTT---G-CCTCCATTAGTTCAAA-AACAAAC-TTTAAT
gi|10 : cagcacaaGG---GGGGAAA-CACG-TTTTT---G-CCTC--------CAAA-AACAAAT-TTTAATt
gi|11 : gcatGGGG---GGAGACA-TATG-TTTTT---G-CCTC--------CAAA-AACAAAC-TTTAAt
gi|12 : caca---GGGAAGA-CATG-TTTTT---G-CCTT--------TATA-AACAAAC-TTTAAT
gi|13 : agcacaGGG---GGAGACA-TATG-TTTT----G-CCCC--------CAAA-GACAAAT-TTTAATt
gi|14 : cataGGGGGG---GGGGA-A-TATG--TTTT---A-CCTC--------CAAA-TACAAAC-TTTGATt
gi|15 : GG---GGGG----TATG-TTTTT---G-C-TC--------CACA-AACAAAC-TTTAATta
gi|16 : aggctGG---GGGG----TATG-TTTTT---G-CCTC--------CAAA-AACAAAC-TTTAATtt
gi|17 : caggctGGGGGGG---GGGGAC---ATG-TTTTT---A-CAAC--------CAAA-AACAAAC-TTT
gi|18 : GG---GGGAACA-TATG-TCTTTTTAG-CCTC--------CAAA-AACtaa
gi|19 : gacagcgcacGGGGCCAGGAGAGA-CATC-TTTTT---G-CCTC--------CAAA-AACAAAC-TTT
gi|2 : GGGGGGGGG---GGCGGCATTATGTTTTTT---G-CCTC--------CAAA-AACAAACGTTTAc
gi|20 : agGGG---GGGAACA-TATG-TTTTT---G-CCTC--------CAAA-AACAAAC-TT
gi|21 : agcacGGGG---GGGGAC---ATG-TTTTT---GCCCTC--------CAAA-AACAAAC-TTTAAT
gi|22 : cG---GGGGAGA-CATG-TTTTT---G-CCAC--------CAAC-AACAAAC--TTAAT
gi|23 : acGGGG---GGAGACA-TATG-TTTTTA--G-CCTC--------CAAA-AACtt
gi|24 : cagcgcacGG---GAGGAGA-AATG-TTTTT---G-CATC--------CAAA-AACAAAT-TTTAAT
gi|25 : GGGGGAGG---GCAGA-A-TATG-TTTT---------C--------CAAA-A-CAAAC-TTTAAT
gi|26 : aACT-NATG-TTTTT---G-CCTC--------GAAA-AACAAAC-TTTAAT
gi|27 : GGG---GGGGACA-TATG-TTTTT---G-CCTC--------CAAA-AAtca
gi|28 : ctgacGGGG---GGAGACA-TATG-TTTTT---G-CCTC--------CA
gi|3 : accggacGGGGG---GGAGACA-TATG-TTTTT---G-CCTC--------AGAA-AACAA
gi|4 : gcatGGGGAGGG---CGGGGCA-T--G-TTTTT---G-CCTC--------CAAA-AACAAAC-TTTAATtttctacttgc
gi|5 : catgaGGGGCA-TGCG-TTTT----G-C-TC--------CAAAGAACAA-C-TTTAAT
gi|6 : ctgacagtgcGGGGGGGGG---GGGGACA-TATG-TTTTT---G-CCTC--------CAAA-AACAAAC-TTTAATtat
gi|7 : GGG---GGAGACA-AATG-TTTTT---G-CCTC--------CAAA-ATCAAAC-TTTAAT
gi|8 : cacaGGG---GGAAACA-TATG-TTTTT---G-TCTC--------CTAA-TACAAAC-TTTAAt
gi|9 : cagcacGGG---GGAGACA-TATG-TTTTT---G-CCTC--------CAAA-AGCAAAC-TTTAAT
blockSeqs : CCA T T TTA C . G G
blockSeqs : . . . A . . . .
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blockSeqCons : ********
originalCons : GGGGGGGGG---GGGGACA-TATG-TTTTT---G-CCTC--------CAAA-AACAAAC-TTTAAT
finalCons : GGGGGGGGG---GGGGACA-TATG-TTTTT---G-CCTC--------CAAA-AACAAAC-TTTAAT
Alignments
lowQualScore : 222 0 1 1 333 1 55555555 1 1
lowQualScore : ... . . . ... . ........ . .
lowQualScore : 777 7 4 4 999 4 22222222 5 7
consensus : GGGGGGGGG---GGGGACA-TATG-TTTTT---G-CCTC--------CAAA-AACAAAC-TTTAAT
Reference ( family-2451 ) : GGGGGGGGG---GGGGACA-TATG-TTTTT---G-CCTC--------CAAA-AACAAAC-TTTAAT
gi|1 : ---GGGGAGA-CATG-TTTTT---G-CCTCCATTAGTTCAAA-AACAAAC-TTTAAT
gi|10 : cagcacaaGG---GGGGAAA-CACG-TTTTT---G-CCTC--------CAAA-AACAAAT-TTTAATt
gi|11 : gcatGGGG---GGAGACA-TATG-TTTTT---G-CCTC--------CAAA-AACAAAC-TTTAAt
gi|12 : caca---GGGAAGA-CATG-TTTTT---G-CCTT--------TATA-AACAAAC-TTTAAT
gi|13 : agcacaGGG---GGAGACA-TATG-TTTT----G-CCCC--------CAAA-GACAAAT-TTTAATt
gi|14 : cataGGGGGG---GGGGA-A-TATG--TTTT---A-CCTC--------CAAA-TACAAAC-TTTGATt
gi|15 : GG---GGGG----TATG-TTTTT---G-C-TC--------CACA-AACAAAC-TTTAATta
gi|16 : aggctGG---GGGG----TATG-TTTTT---G-CCTC--------CAAA-AACAAAC-TTTAATtt
gi|17 : caggctGGGGGGG---GGGGAC---ATG-TTTTT---A-CAAC--------CAAA-AACAAAC-TTT
gi|18 : GG---GGGAACA-TATG-TCTTTTTAG-CCTC--------CAAA-AACtaa
gi|19 : gacagcgcacGGGGCCAGGAGAGA-CATC-TTTTT---G-CCTC--------CAAA-AACAAAC-TTT
gi|2 : GGGGGGGGG---GGCGGCATTATGTTTTTT---G-CCTC--------CAAA-AACAAACGTTTAc
gi|20 : agGGG---GGGAACA-TATG-TTTTT---G-CCTC--------CAAA-AACAAAC-TT
gi|21 : agcacGGGG---GGGGAC---ATG-TTTTT---GCCCTC--------CAAA-AACAAAC-TTTAAT
gi|22 : cG---GGGGAGA-CATG-TTTTT---G-CCAC--------CAAC-AACAAAC--TTAAT
gi|23 : acGGGG---GGAGACA-TATG-TTTTTA--G-CCTC--------CAAA-AACtt
gi|24 : cagcgcacGG---GAGGAGA-AATG-TTTTT---G-CATC--------CAAA-AACAAAT-TTTAAT
gi|25 : GGGGGAGG---GCAGA-A-TATG-TTTT---------C--------CAAA-A-CAAAC-TTTAAT
gi|26 : aACT-NATG-TTTTT---G-CCTC--------GAAA-AACAAAC-TTTAAT
gi|27 : GGG---GGGGACA-TATG-TTTTT---G-CCTC--------CAAA-AAtca
gi|28 : ctgacGGGG---GGAGACA-TATG-TTTTT---G-CCTC--------CA
gi|3 : accggacGGGGG---GGAGACA-TATG-TTTTT---G-CCTC--------AGAA-AACAA
gi|4 : gcatGGGGAGGG---CGGGGCA-T--G-TTTTT---G-CCTC--------CAAA-AACAAAC-TTTAATtttctacttgc
gi|5 : catgaGGGGCA-TGCG-TTTT----G-C-TC--------CAAAGAACAA-C-TTTAAT
gi|6 : ctgacagtgcGGGGGGGGG---GGGGACA-TATG-TTTTT---G-CCTC--------CAAA-AACAAAC-TTTAATtat
gi|7 : GGG---GGAGACA-AATG-TTTTT---G-CCTC--------CAAA-ATCAAAC-TTTAAT
gi|8 : cacaGGG---GGAAACA-TATG-TTTTT---G-TCTC--------CTAA-TACAAAC-TTTAAt
gi|9 : cagcacGGG---GGAGACA-TATG-TTTTT---G-CCTC--------CAAA-AGCAAAC-TTTAAT