lowQualScore : 1 1 11 11 111111 11 1111 111 33333333333333333333333 111 222222222 33333333333 1 44444444444444444 22 11111 11111111 11 11 3333 1111 333333333 111111111 888888888888888888888888888 111111111 1111111111111111
lowQualScore : 3 3 33 88 6 666666 0 77 2 5555 66 888 0 777 888 1 4 77777777777777777777777 0 88888 666 1 0 3 8 33 999 2 222222222 22222222222 0 66666666666666666 0 44 5 7777 11 777 4 4 7 77 99 22222 3 1 5 77777777 5 7 5 0 888 11 0 33 4444 0 3 3 1111 99 222222222 2 1 3333 44 1 1 77777 22 777777777 3333 55 55 777777777 22 444444444444444444444444444 333 555 66 22 777777777 22 44444 1 0 88 3333333333333333 1 4 33
lowQualScore : . . .. .. . ...... . .. . .... .. ... . ... ... . . ....................... . ..... ... . . . . .. ... . ......... ........... . ................. . .. . .... .. ... . . . .. .. ..... . . . ........ . . . . ... .. . .. .... . . . .... .. ......... . . .... .. . . ..... .. ......... .... .. .. ......... .. ........................... ... ... .. .. ......... .. ..... . . .. ................ . . ..
lowQualScore : 3 3 88 66 7 444444 3 11 0 6666 99 888 8 888 000 1 4 99999999999999999999999 1 66666 222 1 8 3 7 66 666 0 555555555 55555555555 8 44444444444444444 2 66 0 6666 66 888 4 4 0 99 00 44444 6 4 0 99999999 7 9 7 1 777 00 6 88 8888 2 2 2 6666 00 000000000 0 9 9999 77 9 8 00000 55 555555555 8888 00 00 333333333 55 666666666666666666666666666 000 777 88 55 555555555 55 55555 8 1 77 0000000000000000 5 1 77
consensus : AATAA-AATA-ATAA--TAAA-TAAT-AA------AAAAG-AAAAC----AATA--CA---ATCAC---TATAAGGTCTT-CCGTTGTA-GACGGAAGACCG----TTTA-ATAAT--AAA---AAGAA--A--CAATA--CAATCACTATAAGGTCTTCCGT-TGTA-GAC-GGAAGACCTTAATA--AT-----AAGAAAC---AAAA----TAAAAACAATATNCG-TCC---------AAACTTT-GTT-TG-GG-AACATAA---T-A-ATAA--AGAAACAAAGTCA---AAAACAAT-ATGTTC--CC----A-AACTTTGTTTGGGGAACA-TAATAATAAT--AATAAG--AAACAAGTTAAAAACAATATGTTCC--CAAAACTTT-GTTTGGGG---------AACATAA-TT-AGAT----CCTTT-GAT-CCGCTC-CC-----A--TA---------C-T--A--T--C---------GCT--AC------C-----C----T-G-CG---TG-T-GTAGCG---A--TA-G---------TA--T-----GG-GAGCGG-ATC---------------AAAGGATCTAAT-TTTAATTAGATT
Reference ( gi|2 ) : AATAA-AATA-ATAA--TAAA-TAAT-AA------AAAAG-AAAAC----AATA--CA---ATCAC---TATAAGGTCTT-C-GTTGTA-GACGGAAGACCA----TTTA-ATAAT--AAA---AAGAA--A--CAATA--CAATCACTATAAGGTCTTCCGT-TGTA-GACGGGAAGACCTTAATA--AT-----AAGAAAC---AGAG----TAAAACCAATATTTG-TCC---------AAACTTTCGTT-TG-GG-AACATAA---T-A-ATAA--AGAAACAGAGTTA---AAAACAAT-ATGTTC--CC----A-AACTTTGTTTGGGGAACA-TAATAATAAT--AATAAG--AAACAGATAAAAAACAATATGTTCC--CAAAACTTT-GTTTGGGG---------AACATAA-TT-AGAT----CCTTT-GAT-CCGCTC-CC-----A--TA---------C-T--A--T--C---------GCT--AC------C-----T----TTG-TG---TG-T-GTAGCG---A--TA-G---------TA--T-----GG-GAGCGG-GTC---------------AAAGGGTCTAAT-TTTAATTAGATT
gi|1 : AATAA-GATA-ATAA--TAA--TAAT-AG------ATAA--AAAAC----TTAA--GA---ATAAC---AATAAG-TTTT-C-CTTGGA-AACGGA-GACC-------TATATAAA--AAACTTAAGAATAA--CAATA--T--TCA-----------TCCGT-TG-A-AACG---AAACCTTAATATAATTAAAGAAGAAAC---A-AG----TAAAAACAATATGTC-CCC---------AAACTTT-GTT-TGTGG-GAC---A---T-A-ATCA--AGACCCAAGGTCAACCAAGACAAG-AT
gi|13 : tatggtcgaaacgttgtaattacctacaactttgtatttgataagtttaacaaaatatttctgtatgaaaatacgatatggacaaaatgttgcaaaaatgcagtgaaagtgttgacgtttttcggtcaggcagctttgacgcttttcgcagtgaatgaatttgattaccctgtgcacaattatgaaatctcagtctacaatccactgaaaattggaagtggatctctacagcttccaaacacttcggacaaactgacacccaaattacaaaacgtcaatattgagtaaatatttgacgtttcgaaaaagcaaaaaaatccgtataaaaattcaaagtgaatatctattcaatccctgaaaattgacaaattggacgacgcatattcgataatcgctgcacagaattttaagaaaaaaaAATAATAATATATAAATTAAAATAATTAA------AAAAG-AAAGCC---AATAAACA---ATCAC---TATTA-GTCTTCC-GTTGTA-GACGGAAGACC
gi|3 : -AATA-ATAA--TAAA-TAAT-AATAATTTAGAAGAAAAACACAGAGTA--GA---AAAAC---AGTAAGGTCTTCC-GCAGAG-GACGGAAGACCAAGACCTTA-AT-----------AAG--------AATA---AATC---GTACGATCTTCCGTCTG-A-AAC-GGAAGACCTTAA
gi|22 : aatacatctttcctgaaaatttcatgaaagtcgatcgagaaacggctgggaaaatcgaggggactgtgtaggaaaatTAA--TAA--TAAT-AA------ACAGG-AAA-C----AATA--CA---ATCAC---TAT-AGGTCTT-C-GTTGTAGGACGAA
gi|9 : AA-TAAT-AA------GAAA------C----AATA--CA---AACAC---TATAAGGTCTTCC-GTTGTA-GACGGAAGACC
gi|26 : aacaatacaaacactataaggtcttccgttgtagacggaagaccttAAT-AA------AAAG---AAAC----AATA--CA---ATCAC---TATAAGGTCTT-C-t
gi|6 : g------AACAG-AAAAC----CATA--TATTGATTGCATTTGTAAGGTCTT-CCGTCTTC-CACGGAAGACCA----TATA-cg
gi|9 : AAC----AATA--CA---AACAC---TATAAGGTCTT-CCGTTGTA-GACGGAAGACC------TTA-ATAAT--AA------GAA--A--CAATA--CAAACACTATAAGGTCTTCCGT-TGTA-GAC-GGAAGACCTgaagaagcaaagtcaacacaatatattcaaaagtttgttatgggaacata
gi|6 : ---TATATGGTCTT-CCGTGGAA-GACGGAAGACC-----TT---ACA---------------------AATG--CAATCAATATATGGTTTTCTGT-TG------------------------------AAGAAGC---AAAG----TCAACACAATA--TA-TTC---------AAAAGTTTGTTATG-GG-AACATA
gi|3 : TAAGGTCTT-CCGTTTCA-GACGGAAGATCG----T
gi|1 : aatacatctttcctgaaaatttcatgaaagtcgatcgagaaacggctgggaaaatcgaggggactgtgtaggaaaataataataataaataataataatttagaagaaaaacacagagtagaaaaacagtaaggtcttccgcagaggacggaagaccaagaccttaataagaataaatcgtTA-ATAAT--AGAT--AAAAA--A--CTTAA--GAATAACAATAAG-TTTTCC-T-TGGA-AACGG--AGACCT--ATA---T-----AAAAAACTTAAGAA----TAA---CAATATTCA-TCCGTTGAAACGAAACCTT-----------AATATAA---TTA-AAGA--AGAAACA-AGT-A---AAAACAAT-ATGTCC--CC----A-AACTTTGTTTGTGGGACA-TAATa
gi|22 : tatggtcgaaacgttgtaattacctacaactttgtatttgataagtttaacaaaatatttctgtatgaaaatacgatatggacaaaatgttgcaaaaatgcagtgaaagtgttgacgtttttcggtcaggcagctttgacgcttttcgcagtgaatgaatttgattaccctgtgcacaattatgaaatctcagtctacaatccactgaaaattggaagtggatctctacagcttccaaacacttcggacaaactgacacccaaattacaaaacgtcaatattgagtaaatatttgacgtttcgaaaaagcaaaaaaatccgtataaaaattcaaagtgaatatctattcaatccctgaaaattgacaaattggacgacgcatattcgataatcgctgcacagaattttaagaaaaaaaaataagataataaTA-ATAAT--AAAC--AGGAA--A--CAATA--CAATCACTAT-AGGTCTT-CGT-TGTAGGACGcaagacccaaggtcaaccaagacaagat
gi|13 : taaA-ATAATTAAAA---AAGAA--AGCCAATAAACAATCACTATTAG-TCTTCCGT-TGTA-GAC-GGAAGACCaa
gi|26 : aataataatatataaattaaAAT--AAA---AAGAA--A--CAATA--CAATCACTATAAGGTCTTCCG
gi|9 : gA--A--CAATA--CAAACACTATAAGGTCTTCCGT-TGTA-GAC-GGAAGACCTTAATA--AT-----AAGAAAC-----AA----TACAAACACTAT
gi|6 : TATATGGTCTTCCGT-GGAA-GACGG-AAGACCTTA------------------C---AAA-----TGCAATCAATATATG---------------GTTTTCTGT-TG---------------------A--AGAAGCAAAGTCA---ACA-CAAT-ATATTC--A-----A-AAGTTTGTTATGGGAACA-TAaaggtcttccgttgtagacggaagacct
gi|6 : TGTAAGGTCTTCCGT-CTTC-CAC-GGAAGACCATA
gi|9 : taTAAGGTCTTCCGT-C-TA-CAACGGAAGACCTTAaatgcaatcaatatatggttttctgttgaagaagcaaagtcaacacaatatattcaaaagtttgttatgggaacata
gi|3 : aacaatacaaacactaTAAGGTCTTCCGT-TTCA-GAC-GGAAGATCGTAataataagaaacaatacaaacactataaggtcttccgttgtagacggaagacct
gi|1 : aatacatctttcctgaaaatttcatgaaagtcgatcgagaaacggctgggaaaatcgaggggactgtgtaggaaaataataataataaataataataatttagaagaaaaacacagagtagaaaaacagtaaggtcttccgcagaggacggaagaccaagaccttaataagaataaatcgTAATA--AT-----AATAGAT---AAAAAACTTAAGAATAACAAT---------------AAGTTTTC-CT-TG-GA-AACGGAGACCT-ATATAA--A-AAAC----TTA---AGAATAACAATATTCATCCGTTGA-AAC---------GAAACCTTAAT-ATAATTAAAGAAG--AAACAAGT-AAAAACAATATGTCCC--C-AAACTTT-GTTTGTGG---------GACATAA-TCAAGAC----CCa
gi|17 : tatggtcgaaacgttgtaattacctacaactttgtatttgataagtttaacaaaatatttctgtatgaaaatacgatatggacaaaatgttgcaaaaatgcagtgaaagtgttgacgtttttcggtcaggcagctttgacgcttttcgcagtgaatgaatttgattaccctgtgcacaattatgaaatctcagtctacaatccactgaaaattggaagtggatctctacagcttccaaacacttcggacaaactgacacccaaattacaaaacgtcaatattgagtaaatatttgacgtttcgaaaaagcaaaaaaatccgtataaaaattcaaagtgaatatctattcaatccctgaaaattgacaaattggacgacgcatattcgataatcgctgcacagaattttaagaaaaaaaaataagataaTAATA--AG-----AAGAAAC---AGAA----TAAAAATAATATGTT-CCC---------AAACTTT-GTT-TG-GGAAACATAA---C-A-Aaaggtcaaccaagacaagat
gi|10 : ataaTATTA--AT-----AAGAAAC------------AAAACCAAAACATGTTTC---------AAAACTTGATT-TG-GG-AACAAGA---T-A-Agataatttt
gi|10 : atattcgcagactttgttttgggagcaATATTCG---C---------AGACTTTGTTT-TG-GG-AGCATAT---T-A-AT-A--AGAAACAAAACCA---A----AAC-ATGTTT--CA----A-AACTTGATTT-GGGAACA-AGATAAggtattttgat
gi|17 : ATAA---T-A-ATAAGAAGAAACAGAAT-A---AAAATAAT-ATGTTC--CC----A-AACTTTGTTTGGGAAACA-TAACAA-GAT--AATggtattttgat
gi|21 : TAA---T-A-ATAA--GGAAAACGAGTTA---AAAAC-AT-ATGTTC--CC----ACCATTTTTTATGGAAGACA-TAATAttt
gi|10 : -ATATTC--GC----A-GACTTTGTTTTGGGAGCA-T-AT-----T--AATAAG--AAACA---AAACCAAAACATGTT-T--CAAAACTTG-ATTT-GGG---------AACAAGA-TA-AGGT----ATTTT-GAT-
gi|17 : ATAATAAT--AAGAAG--AAACAGAATAAAAATAATATGTTCC--C-AAACTTT-GTTTGGGA---------AACATAA-CA-AGAT----
gi|21 : TAAT--AATAAGGAAAACGAGTTAAAAACA-TATGTTCC--CACCATTTT-TTATGGAA---------GACATAA-Taatttt
gi|4 : ATGTTTCTCCAAAAATTAAGCTTGGGGTTTATTACCAATGTAA-TG-AAA------CTTA-GAT-CCGCTC-AC-----A--CA---------C----A--T--T---------GCT--AC------A-----CAAGGTAG-CT---TG-T-GCAGAG---A--TA-AA--------TA--T-----GT-GAGCGG-ATC---------------AAAGGATa
gi|11 : CATAAATT-AAA------ATTA-GAT-CTA-TC-CC-----A--TAT--------C-A--A--T--C---------GCT--AC------CAAAGGT----TTG-T-------C-GTAG--------TA-----------TA--T-----GG-GAGCGG-ATC----------------AAGAATCTGA--TTTAAT
gi|16 : TAA-TT-AGAT----CCTTT-GAT--CGCTCTCC-----A--TA---------C-T--A--T--C---------GCT--AC-------------------------------------------------------------------G-GGGCGG-ATC---------------AAAGGATCTAAT-TTTAATTAGATTa
gi|7 : aatTAA-TT-AAATGAAACTTGTAGAT-CCGCTC-CTCCACGA--TA---------CGC--A--T--C---------AAT--ACAGTACGC-----T----TTG-TG---TG------GCG---A--TA-G---------TA--T-----GT-GAACGG-ATC---------------AAAGGATCTAAC-TT-AATTAGATT
gi|16 : atcAA-TT-AGAT----CCTTT-GAT-CCGCCC-C-------------------------------------------------------------------------------GTAGCG---A--TA-G---------TA--T-----GGAGAGC-G-ATC---------------AAAGGATCTAA---TTAATT
gi|7 : AG-TT-AGAT----CCTTT-GAT-CCGTTC-AC-----A--TA---------C-T--A--T--C---------GCC--ACA-----C-----A----AAG-CG---TACT-GTATTG---A--TGCG---------TA--TCGTGGAG-GAGCGG-ATC---------------TACAAGTTTCA--TTTAATTAGATttaattagatt
gi|5 : AA-TC-AGAT----CCTC--GAT-CCGCTC-CT-----A--TATTTTTTGG-C-T--G--T--C---------GCT--AC------------------TA-CT---CG-T-GTAGCG---A--CA-GCAAAAAAAATG--T-----AG-GAGCGG-ATC----------------GAGGATCCGAT-TTTAATCAGAtaattagatt
gi|5 : AA-TC-GGAT----CCTC--GAT-CCGCTC-CT-----A--CATTTTTTTTGC-T--G--T--C---------GCT--AC-------------------A-CG---AG-TAGTAGCG---A--CA-GCCAAAAAA-TA--T-----AG-GAGCGG-ATC---------------GA-GGATCTGAT-TTTAATCAGATTttaatcagattg
gi|24 : tctgattaaAA-TT-AGAT----ACTTT-GAC-CCGCTC-CC-----A--TA---------A-T--A--T--C---------ACT--AC------g
gi|12 : atgtAA-TT-AGAT----CCTTT-GAT-CCGGGT-CC-----A--TA---------C-T--A--T--C---------CCT--AC------A-----C----AAA-GG---CG-T-GTAGCGTT-AACTA-G---------TA--T------------------------------------GGATCTAAT-TTTAATTAGttaatta
gi|11 : taaAA-TC-AGAT----TCTT--GAT-CCGCTC-CCAT---A--TA---------C-T--A-----C---------GACAAAC------C-----T----TTG-----------GTAGCG---A--TT-GA--------TA--T-----GG-GA------T-------------------AGATCTAAT-TTTAATT
gi|23 : attaAA-TT-AGAT----CCTTT-GAT-TTGCTC-CC-----T--TA---------C-T--A--T--C---------GCT--AC------tatga
gi|8 : AA-TT-A-AT----CCTT--GAT-CCGC-C-TC-----A--CG---------T-TAGA--T--C---------GC---ACA-----C-----T----------------T-GTAGCG---A--T--C---------TAACT-----AG-AAGCGG-ATC---------------AAA--GTCTAAT-ttttttagattg
gi|25 : AA-TT-AGAC----CCTTT-GAT-CCGCCC-CC-----A---A---------C----A--T--C---------TCT--AC------tattaaaggatctaattttaattagattg
gi|27 : atAG-TT-AGAT----CCTTT-GAT-CCGCTC-ctaatcag
gi|8 : A-TT-AGA------CTTT-GAT-CCGCTT-CT-----AGTTA-----------G--A--T--C---------GCT--AC-------------------A-AG---TG-T----GCG---ATCTA-A---------CG--T-----GA-G-GCGG-ATCAAGGATTAATTTATTAAAGGATCTAAT-TTTAATTAGATTctaattagatt
gi|18 : T-AGAT----CCATT-GAT-CCGCTC-CC-----A--TA---------C-T--A--T--C---------GCT--ACA-----C-----A----TAGCTA---TG-T-GTAGCT---A--TA-G---------TA--T-----g
gi|15 : aaT-AGAT----CCATT-GATTCCGCTC-CC-----A--TA---------C-T--A--T--C---------GCT--AC------CACA--T----CAG-CGTAATG-T-GTAGCtttaattttaatt
gi|4 : aAT----CCTTT-GAT-CCGCTC-AC-----A--TAT--------T-T--A--T--CTCTGCACAAGCT--AC------C-----T-------------TG-T-GTAGCA---A--T--G---------TG--T-----GT-GAGC------------------------GGATCTAAG-TTTCATTACATTttgtctaattagattgcg
gi|19 : atgtttctccaaaaattaagcttggggtttattaccTT-GAT-CCGGGT-CC-----A--TA---------C-T--A--T--C---------CCT--AC------A-----C----AAA-GG---CG-T-GTAGCGTTAAC-TA-G---------TA--T-----GG-A------------------------------TCTAAT-TTTAATTAGAT
gi|12 : -CC-----A--TA---------C-T--AGTTAAC---------GCT--ACACG---C-----C----TT-------TG-T-GTAGGG---A--TA-G---------TA--T-----GG-ACCCGG-ATC---------------AAAGGATCTAAT-TTTA
gi|19 : -CC-----A--TA---------C-T--AGTTAAC---------GCT--ACACG---C-----C----TT-------TG-T-GTAGGG---A--TA-G---------TA--T-----GG-ACCCGG-ATC---------------AAatctaattttaattag
gi|18 : -----A--TA---------C-T--A--T--A---------GCT--ACA-----C-----A----TAGCTA---TG-T-GTAGCG---A--TA-G---------TA--T-----GG-GAGCGG-ATC---------------AATGGATCTAatctaattttaattagat
gi|15 : aa-TG---TG---GTAGCG---A--TA-G---------TA--T-----GG-GAGCGGAATC---------------AATGGATCTATTGTCTAATTAGATTtttaattttaatt
gi|24 : agctacacattacgctga---TG-T-GTAGTG---A--TA-T---------TA--T-----GG-GAGCGG-GTC---------------AAAGTATCTAAT-TTTAATTAgcg
gi|25 : a-T-GTAGAG---A--T--G---------T---T-----GG-GGGCGG-ATC---------------AAAGGGTCTAAT-TCTAATCAG
gi|23 : a-GTAGCG---A--TA-G---------TA--A-----GG-GAGCAA-ATC---------------AAAGGATCTAAT-TTTTTTTAGATT
gi|27 : -GAGCGG-ATC---------------AAAGGATCTAAC-TCTAATTAGATTg
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): AAATACATTTTTCCTGAAATTTCATGAAAATTGATTAAGAAATGGTTCAGAAAATCGTGAGGTAAATCAAGGAAAATA
Unaligned ( gi|20 ): AATCTGATTAAAATCAAATCCTCGATCCATTCCTATGAGCTGAGCGGATCGAGGATCTGATCTTCATCAGATT
Alignments
lowQualScore : 1 1 11 1 1 333333 111 1 11 11 444444 111111 222222 4444444444444 2222222 1 111 1 22 1 11 1 555555555 11111 11111 11111111 666666666666666666 11111 111111111 11111111111111111
lowQualScore : 3 3 88 3 3 888888 777 0 33 33 4 1 1 555555 0 555555 0 66 66 0 4 5 888 5 3 222222 4 1 1 2222222222222 3333333 0 777 3 9 3 0 2 7 77 4 5 88 3 3 333333333 33333 99 4 55555 55 44444444 4 999999999999999999 22222 5 000000000 11 2 66666666666666666 2
lowQualScore : . . .. . . ...... ... . .. .. . . . ...... . ...... . .. .. . . . ... . . ...... . . . ............. ....... . ... . . . . . . .. . . .. . . ......... ..... .. . ..... .. ........ . .................. ..... . ......... .. . ................. .
lowQualScore : 3 3 33 3 3 333333 555 0 88 88 0 0 4 000000 1 999999 1 99 99 4 5 7 666 7 2 666666 7 0 0 2222222222222 5555555 0 000 2 0 2 2 5 3 55 0 5 33 7 3 333333333 99999 22 4 55555 55 55555555 0 333333333333333333 44444 7 777777777 55 4 99999999999999999 7
consensus : AATAA-AATA-ATAA--TAAA-TAAT-AA------AAAAGAAAA---C-AA--TA--CAANCACTATAAGGTCTTCCGTTGTAGACGGAAGACCA----TTTAATAAT--AAA-AAGAAA--CAATA--CAATCACTATAAGGTCTTCCGT-TGTA-GACGG-AAGACCTTAATA-TAAGAAACANAGTAAAAACAATATTCGTCC---------AAACTTT-GTT-T-GGGAACATAAT-AATAA--AGAAACAGAGTCAAAAACAATATGTTCCCAAACTTTGTTTGGGGAACATAATAATAATAATAAGGAAAACGGGTNAAAAACAATATGTTCC--CAAAANTTT-GTTTGGGG---------AACGTAATTAGAT----CCTTT-GATCCGCTC-CC-----A--TA--------C-TATCGCTACA-C----T-G-C-G---CGTGTAGCG--A--TAG-TA---------TGGGAGCGG-ATCA---------------AAGGATCTAAT-TTTAATTAGATT
Reference ( family-244 ) : AATAA-AATA-ATAA--TAAA-TAAT-AA------AAAAGAAAA---C-AA--TA--CAATCACTATAAGGTCTTCCGTTGTAGACGGAAGACCG----TTTAATAAT--AAA-AAGAAA--CAATA--CAATCACTATAAGGTCTTCCGT-TGTA-GACGG-AAGACCTTAATAATAAGAAACAAAATAAAAACAATATNCGTCC---------AAACTTT-GTT-T-GGGAACATAAT-AATAA--AGAAACAAAGTCAAAAACAATATGTTCCCAAACTTTGTTTGGGGAACATAATAATAATAATAAG--AAACAAGTTAAAAACAATATGTTCC--CAAAACTTT-GTTTGGGG---------AACATAATTAGAT----CCTTT-GATCCGCTC-CC-----A--TA--------C-TATCGCTACC-C----T-G-C-G---TGTGTAGCG--A--TAG-TA---------TGGGAGCGG-ATCA---------------AAGGATCTAAT-TTTAATTAGATT
gi|1 : TAATAAT--AGATAAAAAA--CTTAA--GAATAACAATAAG-TTTTCC-T-TGGA-AACGG-A-GACCT--ATA-TAAAAAACTTAAGAATAACAATATTCATCCGTTGAAACGAAACCTT----------AATATAATTAAAGA--AGAAACAA-GT-AAAAACAATATGTCCCCAAACTTTGTTTGTGGGACATAAT
gi|10 : tatggtcgaaacgttgtaattacctacaactttgtatttgataagtttaacaaaatatttctgtatgaaaatacgatatggacaaaatgttgcaaaaatgcagtgaaagtgttgacgtttttcggtcaggcagctttgacgcttttcgcagtgaatgaatttgattaccctgtgcacaattatgaaatctcagtctacaatccactgaaaattggaagtggatctctacagcttccaaacacttcggacaaactgacacccaaattacaaaacgtcaatattgagtaaatatttgacgtttcgaaaaagcaaaaaaatccgtataaaaattcaaagtgaatatctattcaatccctgaaaattgacaaattggacgacgcatattcgataatcgctgcacagaattttaagaaaaaaaaataagataataaATATTCG--C---------AGACTTT-GTT-TTGGGAGCATATT-AATAA---GAAACAAAACCAA----AACATGTTTCAAAACTTGATTT-GGGAACAAGATAAcaagacccaaggtcaaccaagacaagat
gi|11 : AATCAGAT----TCTT--GATCCGCTC-CCAT---A--TA--------C-TACGACAAAC-C----T-T-T-G------GTAGCG--A--TTGATA---------TG-----GG-AT-------------------AGATCTAAT-TTTAATTggtattttgat
gi|12 : attaAATTAGAT----CCTTT-GATCCGGGT-CC-----A--TA--------C-TATCCCTACA-CAA--A-G---G---CGTGTAGCGTTAACTAG-TA---------T------------------------------GGATCTAAT-TTTAATTAGtatga
gi|13 : taaAATAATAATATATAAATTAAAATAATTAA------AAAAGAAAG---CCAA--TAAACAATCACTATTAG-TCTTCCGTTGTAGACGGAAGACC
gi|13 : AATAATTAAAA-AAGAAAGCCAATAAACAATCACTATTAG-TCTTCCGT-TGTA-GACGG-AAGACC
gi|15 : aataataatatataaattaaTACG-C----T-GAT-G---TG-GTAGCG--A--TAG-TA---------TGGGAGCGGAATCA---------------ATGGATCTATTGTCTAATTAGATT
gi|16 : agctacacatTAATTAGAT----CCTTT-GATC-GCTCTCC-----A--TA--------C-TATCGCTAC------------------------------------------------GGGGCGG-ATCA---------------AAGGATCTAAT-TTTAATTAGATTgcg
gi|17 : aatATAAT-AATAAGAAGAAACAGAAT-AAAAATAATATGTTCCCAAACTTTGTTTGGGAAACATAACAA-GATAAT
gi|18 : -----A--TA--------C-TATAGCTACA-CA---TAG-CTA---TGTGTAGCG--A--TAG-TA---------TGGGAGCGG-ATCA---------------ATGGATCTAttt
gi|19 : aaTT-GATCCGGGT-CC-----A--TA--------C-TATCCCTACA-CAA--A-G---G---CGTGTAGCGTTAACTAG-TA---------T------------------------------GGATCTAAT-TTTAATTAGATtttaattttaatt
gi|2 : AATAA-AATA-ATAA--TAAA-TAAT-AA------AAAAGAAAA---C-AA--TA--CAATCACTATAAGGTCTTC-GTTGTAGACGGAAGACCA----TTTAATAAT--AAA-AAGAAA--CAATA--CAATCACTATAAGGTCTTCCGT-TGTA-GACGGGAAGACCTTAATAATAAGAAACAGAGTAAAACCAATATTTGTCC---------AAACTTTCGTT-T-GGGAACATAAT-AATAA--AGAAACAGAGTTAAAAACAATATGTTCCCAAACTTTGTTTGGGGAACATAATAATAATAATAAG--AAACAGATAAAAAACAATATGTTCC--CAAAACTTT-GTTTGGGG---------AACATAATTAGAT----CCTTT-GATCCGCTC-CC-----A--TA--------C-TATCGCTACCTT----T-G-T-G---TGTGTAGCG--A--TAG-TA---------TGGGAGCGG-GTCA---------------AAGGGTCTAAT-TTTAATTAGATT
gi|20 : A---------TAGGAATGG-ATCG---------------A-GGATTTGAT-TTTAATCAGATT
gi|20 : GAGCGG-ATCG---------------A-GGATCTGAT-CTTCATCAGATTgagctgagcggatcgaggatctgatcttcatcagatt
gi|21 : aatctgattaaaatcaaatcctcgatccattcctatgagctTAATAATAAGGAAAACGAGTTAAAAACA-TATGTTCC--CACCATTTT-TTATGGAA---------GACATAAT
gi|22 : TAATAAT--AAACAGGAAA--CAATA--CAATCACTAT-AGGTCTT-CGT-TGTAGGACGA-Aa
gi|23 : taaGTAGCG--A--TAG-TA---------AGGGAGCAA-ATCA---------------AAGGATCTAAT-TTTTTTTAGATT
gi|24 : ---TGTGTAGTG--A--TAT-TA---------TGGGAGCGG-GTCA---------------AAGTATCTAAT-TTTAATTAg
gi|25 : aTGTAGAG--A--T-G-T----------TGGGGGCGG-ATCA---------------AAGGGTCTAAT-TCTAATCAG
gi|26 : aAAT--AAA-AAGAAA--CAATA--CAATCACTATAAGGTCTTCCG
gi|27 : gGAGCGG-ATCA---------------AAGGATCTAAC-TCTAATTAGATT
gi|3 : -AATA-ATAA--TAAA-TAAT-AATAATTTAGAAGAAAAACAC-AGAGTA--GAAAAACAGTAAGGTCTTCCGCAGAGGACGGAAGACCAAGACCTTAAT---------AAG------AATA---AATC---GTACGATCTTCCGTCTG-A-AACGG-AAGACCTTAA
gi|4 : aatacatctttcctgaaaatttcatgaaagtcgatcgagaaacggctgggaaaatcgaggggactgtgtaggaaaatATGTTTCTCCAAAAATTAAGCTTGGGGTTTATTACCAATGTAATGAAA------CTTA-GATCCGCTC-AC-----A--CA--------C--ATTGCTACA-CAAGGTAG-C-T---TGTGCAGAG--A--TAAATA---------TGTGAGCGG-ATCA---------------AAGGAT
gi|5 : AATCAGAT----CCTC--GATCCGCTC-CT-----A--TATTTTTTGGC-TGTCGCTAC-------T-A-C-T---CGTGTAGCG--A--CAG-CAAAAAAAATGTAGGAGCGG-ATCG---------------A-GGATCCGAT-TTTAATCAGA
gi|6 : TATATGGTCTTCCGTGGAAGACGGAAGACC-----TT--ACA-----------------AATG--CAATCAATATATGGTTTTCTGT-TG-----------------------AAGAAGCAAAGTCAACACAATATAT-TCA---------AAAGTTT-GTTAT-GGGAACATAttaatcagattg
gi|7 : TAATTAAATGAAACTTGTAGATCCGCTC-CTCCACGA--TA--------CGCATCAATACA-G----T-A-C-GCTTTGTGTGGCG--A--TAG-TA---------TGTGAACGG-ATCA---------------AAGGATCTAA--CTTAATTAGATT
gi|8 : atcATTAGA------CTTT-GATCCGCTT-CT-----AGTTA----------GATCGCTAC---------A-A-G---TGT---GCG--ATCTAA-CG---------TGAG-GCGG-ATCAAGGATTAATTTATTAAAGGATCTAAT-TTTAATTAGATT
gi|9 : AA---C-AA--TA--CAAACACTATAAGGTCTTCCGTTGTAGACGGAAGACC------TTAATAAT--AA----GAAA--CAATA--CAAACACTATAAGGTCTTCCGT-TGTA-GACGG-AAGACCTg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AAATACATTTTTCCTGAAATTTCATGAAAATTGATTAAGAAATGGTTCAGAAAATCGTGAGGTAAATCAAGGAAAATA
Alignments
lowQualScore : 1 1 11 1 1 333333 111 1 11 11 333333 111111 222222 4444444444444444 2222222 1 11 1 11 1 11 1 555555555 11111 11111 1111111111 888888888888888888888 11111 111111111 11111111111111111
lowQualScore : 3 3 88 3 3 888888 777 0 33 33 1 1 1 777777 0 555555 0 66 66 0 4 5 888 5 3 000000 1 3333333333333333 3333333 0 7 33 6 9 3 0 2 7 88 1 5 88 1 3 333333333 0 33333 99 4 00000 55 8888888888 111111111111111111111 2 22222 5 000000000 11 2 66666666666666666 2
lowQualScore : . . .. . . ...... ... . .. .. . . . ...... . ...... . .. .. . . . ... . . ...... . ................ ....... . . .. . . . . . . .. . . .. . . ......... . ..... .. . ..... .. .......... ..................... . ..... . ......... .. . ................. .
lowQualScore : 3 3 33 3 3 333333 555 0 88 88 0 0 4 555555 1 999999 1 99 99 4 5 7 666 7 2 666666 0 5555555555555555 5555555 0 0 88 5 0 2 2 5 3 00 0 5 33 0 3 333333333 7 99999 22 4 00000 55 5555555555 444444444444444444444 9 44444 7 777777777 55 4 99999999999999999 7
consensus : AATAA-AATA-ATAA--TAAA-TAAT-AA------AAAAGAAAA---C-AA--TA--CAANCACTATAAGGTCTTCCGTTGTAGACGGAAGACCA----TTTAATAAT--AAA-AAGAAA--CAATA--CAATCACTATAAGGTCTTCCGT-TGTA-GACGG-AAGACCTTAATA-TAAGAAACANAGTAAAAACAATAT-TCGTCC---------AAACTTT-GTT-T-GGGAACATAAT-AATAA--AGAAACAGAGTCAAAAACAATATGTTCCCAAACTTTGTTTGGGGAACATAATAATAATAATAAGGAAAACGGGTNAAAAACAATATGTTCC--CAAAANTTT-GTTTGGGG---------AACGTAATTAGAT----CCTTT-GATCCGCTC-CC-----A--TA--------C-TATCGCTAC-A---CA---T-GC-GC----GTG-TAGCG--A--TAG-TA---------TGGGAGCGG-ATCA---------------AAGGATCTAAT-TTTAATTAGATT
Reference ( family-244 ) : AATAA-AATA-ATAA--TAAA-TAAT-AA------AAAAGAAAA---C-AA--TA--CAANCACTATAAGGTCTTCCGTTGTAGACGGAAGACCA----TTTAATAAT--AAA-AAGAAA--CAATA--CAATCACTATAAGGTCTTCCGT-TGTA-GACGG-AAGACCTTAATA-TAAGAAACANAGTAAAAACAATAT-TCGTCC---------AAACTTT-GTT-T-GGGAACATAAT-AATAA--AGAAACAGAGTCAAAAACAATATGTTCCCAAACTTTGTTTGGGGAACATAATAATAATAATAAGGAAAACGGGTNAAAAACAATATGTTCC--CAAAANTTT-GTTTGGGG---------AACGTAATTAGAT----CCTTT-GATCCGCTC-CC-----A--TA--------C-TATCGCTAC-A---C----T-GC-GC----GTG-TAGCG--A--TAG-TA---------TGGGAGCGG-ATCA---------------AAGGATCTAAT-TTTAATTAGATT
gi|1 : TAATAAT--AGATAAAAAA--CTTAA--GAATAACAATAAG-TTTTCC-T-TGGA-AACGG-A-GACCT--ATA-TAAAAAACTTAAGAATAACAATAT-TCATCCGTTGAAACGAAACCTT----------AATATAATTAAAGA--AGAAACA-AGT-AAAAACAATATGTCCCCAAACTTTGTTTGTGGGACATAAT
gi|10 : tatggtcgaaacgttgtaattacctacaactttgtatttgataagtttaacaaaatatttctgtatgaaaatacgatatggacaaaatgttgcaaaaatgcagtgaaagtgttgacgtttttcggtcaggcagctttgacgcttttcgcagtgaatgaatttgattaccctgtgcacaattatgaaatctcagtctacaatccactgaaaattggaagtggatctctacagcttccaaacacttcggacaaactgacacccaaattacaaaacgtcaatattgagtaaatatttgacgtttcgaaaaagcaaaaaaatccgtataaaaattcaaagtgaatatctattcaatccctgaaaattgacaaattggacgacgcatattcgataatcgctgcacagaattttaagaaaaaaaaataagataataaATAT-TCG--C---------AGACTTT-GTT-TTGGGAGCATATT-AAT-A--AGAAACAAAACCAA----AACATGTTTCAAAACTTGATTT-GGGAACAAGATAAcaagacccaaggtcaaccaagacaagat
gi|11 : AATCAGAT----TCTT--GATCCGCTC-CC-----A--TA----------TACTACGAC-AAACC----T-TT-G-------G-TAGCG--A--TTGATA---------TG-----GG-AT-------------------AGATCTAAT-TTTAATTggtattttgat
gi|12 : attaAATTAGAT----CCTTT-GATCCGGGT-CC-----A--TA--------C-TATCCCTAC-A---CAA--A-G--GC----GTG-TAGCGTTAACTAG-TA---------T------------------------------GGATCTAAT-TTTAATTAGtatga
gi|13 : taaAATAATAATATATAAATTAAAATAATTAA------AAAAGAAAG---CCAA--TAAACAATCACTATTAG-TCTTCCGTTGTAGACGGAAGACC
gi|13 : AATAATTAAAA-AAGAAAGCCAATAAACAATCACTATTAG-TCTTCCGT-TGTA-GACGG-AAGACC
gi|15 : aataataatatataaattaaGCTAC-A---CAT--T-AC-GCTGATGTGGTAGCG--A--TAG-TA---------TGGGAGCGGAATCA---------------ATGGATCTATTGTCTAATTAGATT
gi|16 : aTAATTAGAT----CCTTT-GATC-GCTCTCC-----A--TA--------C-TATCGCTAC----------------------------------------------------GGGGCGG-ATCA---------------AAGGATCTAAT-TTTAATTAGATTgcg
gi|17 : aatATAAT-AATAAGAAGAAACAGAAT-AAAAATAATATGTTCCCAAACTTTGTTTGGGAAACATAACAA-GATAAT
gi|18 : -----A--TA--------C-TATAGCTAC-A---CA---TAGCTAT----GTG-TAGCG--A--TAG-TA---------TGGGAGCGG-ATCA---------------ATGGATCTAttt
gi|19 : aaTT-GATCCGGGT-CC-----A--TA--------C-TATCCCTAC-A---CAA--A-G--GC----GTG-TAGCGTTAACTAG-TA---------T------------------------------GGATCTAAT-TTTAATTAGATtttaattttaatt
gi|2 : AATAA-AATA-ATAA--TAAA-TAAT-AA------AAAAGAAAA---C-AA--TA--CAATCACTATAAGGTCTTC-GTTGTAGACGGAAGACCA----TTTAATAAT--AAA-AAGAAA--CAATA--CAATCACTATAAGGTCTTCCGT-TGTA-GACGGGAAGACCTTAATAATAAGAAACAGAGTAAAACCAATAT-TTGTCC---------AAACTTTCGTT-T-GGGAACATAAT-AATAA--AGAAACAGAGTTAAAAACAATATGTTCCCAAACTTTGTTTGGGGAACATAATAATAATAATAAG--AAACAGATAAAAAACAATATGTTCC--CAAAACTTT-GTTTGGGG---------AACATAATTAGAT----CCTTT-GATCCGCTC-CC-----A--TA--------C-TATCGCTAC-----CTT--T-GT-GT----GTG-TAGCG--A--TAG-TA---------TGGGAGCGG-GTCA---------------AAGGGTCTAAT-TTTAATTAGATT
gi|20 : A---------TAGGAATGG-ATCG---------------A-GGATTTGAT-TTTAATCAGATT
gi|20 : GAGCGG-ATCG---------------A-GGATCTGAT-CTTCATCAGATTgagctgagcggatcgaggatctgatcttcatcagatt
gi|21 : aatctgattaaaatcaaatcctcgatccattcctatgagctTAATAATAAGGAAAACGAGTTAAAAAC-ATATGTTCC--CACCATTTT-TTATGGAA---------GACATAAT
gi|22 : TAATAAT--AAACAGGAAA--CAATA--CAATCACTAT-AGGTCTT-CGT-TGTAGGACGA-Aa
gi|23 : taaG-TAGCG--A--TAG-TA---------AGGGAGCAA-ATCA---------------AAGGATCTAAT-TTTTTTTAGATT
gi|24 : ----GTG-TAGTG--A--TAT-TA---------TGGGAGCGG-GTCA---------------AAGTATCTAAT-TTTAATTAg
gi|25 : atTG-TAGAG--A--T-G-T----------TGGGGGCGG-ATCA---------------AAGGGTCTAAT-TCTAATCAG
gi|26 : aAAT--AAA-AAGAAA--CAATA--CAATCACTATAAGGTCTTCCG
gi|27 : gGAGCGG-ATCA---------------AAGGATCTAAC-TCTAATTAGATT
gi|3 : -AATA-ATAA--TAAA-TAAT-AATAATTTAGAAGAAAAACAC-AGAGTA--GAAAAACAGTAAGGTCTTCCGCAGAGGACGGAAGACCAAGACCTTAAT---------AAG------AATA---AATC---GTACGATCTTCCGTCTG-A-AACGG-AAGACCTTAA
gi|4 : aatacatctttcctgaaaatttcatgaaagtcgatcgagaaacggctgggaaaatcgaggggactgtgtaggaaaatATGTTTCTCCAAAAATTAAGCTTGGGGTTTATTACCAATGTAATGAAA------CTTA-GATCCGCTC-AC-----A--CA--------C--ATTGCTAC-A---CAAGGTAGC-TT----GTG-CAGAG--A--TAAATA---------TGTGAGCGG-ATCA---------------AAGGAT
gi|5 : AATCAGAT----CCTC--GATCCGCTC-CT-----A--TATTTTTTGGC-TGTCGCTACTA---C----T-----C----GTG-TAGCG--A--CAG-CAAAAAAAATGTAGGAGCGG-ATCG---------------A-GGATCCGAT-TTTAATCAGA
gi|6 : TATATGGTCTTCCGTGGAAGACGGAAGACC-----TT--ACA-----------------AATG--CAATCAATATATGGTTTTCTGT-TG-----------------------AAGAAGCAAAGTCAACACAATATAT--TCA---------AAAGTTT-GTTAT-GGGAACATAttaatcagattg
gi|7 : TAATTAAATGAAACTTGTAGATCCGCTC-CTCCACGA--TA--------CGCATCAATAC-A---G----T-AC-GCTTT-GTG-TGGCG--A--TAG-TA---------TGTGAACGG-ATCA---------------AAGGATCTAA--CTTAATTAGATT
gi|8 : atcATTAGA------CTTT-GATCCGCTT-CT-----AGTTA----------GATCGCTAC-A--------------A----GTG-T-GCG--ATCTAA-CG---------TGAG-GCGG-ATCAAGGATTAATTTATTAAAGGATCTAAT-TTTAATTAGATT
gi|9 : AA---C-AA--TA--CAAACACTATAAGGTCTTCCGTTGTAGACGGAAGACC------TTAATAAT--AA----GAAA--CAATA--CAAACACTATAAGGTCTTCCGT-TGTA-GACGG-AAGACCTg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AAATACATTTTTCCTGAAATTTCATGAAAATTGATTAAGAAATGGTTCAGAAAATCGTGAGGTAAATCAAGGAAAATA
Alignments
lowQualScore : 1 1 11 1 1 333333 111 1 11 11 333333 111111 222222 4444444444444444 2222222 1 11 1 11 1 11 1 555555555 11111 11111 1111111111 444444444444444444 11111111111111111111 11111111111111111
lowQualScore : 3 3 88 3 3 888888 777 0 33 33 1 1 1 777777 0 555555 0 66 66 0 4 5 888 5 3 000000 1 3333333333333333 3333333 0 7 33 6 9 3 0 2 7 88 1 5 88 1 3 333333333 0 11111 77 4 00000 55 8888888888 333333333333333333 3 33 2 33333333333333333333 33 0 2 77777777777777777 2
lowQualScore : . . .. . . ...... ... . .. .. . . . ...... . ...... . .. .. . . . ... . . ...... . ................ ....... . . .. . . . . . . .. . . .. . . ......... . ..... .. . ..... .. .......... .................. . .. . .................... .. . . ................. .
lowQualScore : 3 3 33 3 3 333333 555 0 88 88 0 0 4 555555 1 999999 1 99 99 4 5 7 666 7 2 666666 0 5555555555555555 5555555 0 0 88 5 0 2 2 5 3 00 0 5 33 0 3 333333333 7 33333 44 0 00000 55 5555555555 333333333333333333 1 99 9 11111111111111111111 11 4 5 44444444444444444 7
consensus : AATAA-AATA-ATAA--TAAA-TAAT-AA------AAAAGAAAA---C-AA--TA--CAANCACTATAAGGTCTTCCGTTGTAGACGGAAGACCA----TTTAATAAT--AAA-AAGAAA--CAATA--CAATCACTATAAGGTCTTCCGT-TGTA-GACGG-AAGACCTTAATA-TAAGAAACANAGTAAAAACAATAT-TCGTCC---------AAACTTT-GTT-T-GGGAACATAAT-AATAA--AGAAACAGAGTCAAAAACAATATGTTCCCAAACTTTGTTTGGGGAACATAATAATAATAATAAGGAAAACGGGTNAAAAACAATATGTTCC--CAAAANTTT-GTTTGGGG---------AACGTAATTAGAT----CCTTT-GATCCGCTC-CC-----A--TA--------C-TATCGCTAC-ACG---T-AC-GC----G-T--G-TAGCG--A--TAG-TA---------TGGGAGCGG-ATCA---------------AAGGATCTAAT-TTTAATTAGATT
Reference ( family-244 ) : AATAA-AATA-ATAA--TAAA-TAAT-AA------AAAAGAAAA---C-AA--TA--CAANCACTATAAGGTCTTCCGTTGTAGACGGAAGACCA----TTTAATAAT--AAA-AAGAAA--CAATA--CAATCACTATAAGGTCTTCCGT-TGTA-GACGG-AAGACCTTAATA-TAAGAAACANAGTAAAAACAATAT-TCGTCC---------AAACTTT-GTT-T-GGGAACATAAT-AATAA--AGAAACAGAGTCAAAAACAATATGTTCCCAAACTTTGTTTGGGGAACATAATAATAATAATAAGGAAAACGGGTNAAAAACAATATGTTCC--CAAAANTTT-GTTTGGGG---------AACGTAATTAGAT----CCTTT-GATCCGCTC-CC-----A--TA--------C-TATCGCTAC-ACA---T-GC-GC----G-T--G-TAGCG--A--TAG-TA---------TGGGAGCGG-ATCA---------------AAGGATCTAAT-TTTAATTAGATT
gi|1 : TAATAAT--AGATAAAAAA--CTTAA--GAATAACAATAAG-TTTTCC-T-TGGA-AACGG-A-GACCT--ATA-TAAAAAACTTAAGAATAACAATAT-TCATCCGTTGAAACGAAACCTT----------AATATAATTAAAGA--AGAAACA-AGT-AAAAACAATATGTCCCCAAACTTTGTTTGTGGGACATAAT
gi|10 : tatggtcgaaacgttgtaattacctacaactttgtatttgataagtttaacaaaatatttctgtatgaaaatacgatatggacaaaatgttgcaaaaatgcagtgaaagtgttgacgtttttcggtcaggcagctttgacgcttttcgcagtgaatgaatttgattaccctgtgcacaattatgaaatctcagtctacaatccactgaaaattggaagtggatctctacagcttccaaacacttcggacaaactgacacccaaattacaaaacgtcaatattgagtaaatatttgacgtttcgaaaaagcaaaaaaatccgtataaaaattcaaagtgaatatctattcaatccctgaaaattgacaaattggacgacgcatattcgataatcgctgcacagaattttaagaaaaaaaaataagataataaATAT-TCG--C---------AGACTTT-GTT-TTGGGAGCATATT-AAT-A--AGAAACAAAACCAA----AACATGTTTCAAAACTTGATTT-GGGAACAAGATAAcaagacccaaggtcaaccaagacaagat
gi|11 : AATCAGAT----TCTT--GATCCGCTC-CC-----A--TA----------TA---CTACGACA---A-AC--C----T-TTGG-TAGCG--A--TTGATA---------TG-----GG-AT-------------------AGATCTAAT-TTTAATTggtattttgat
gi|12 : attaAATTAGAT----CCTTT-GATCCGGGT-CC-----A--TA--------C-TATCCCTAC-ACA---A-AG-GC----G-T--G-TAGCGTTAACTAG-TA---------T------------------------------GGATCTAAT-TTTAATTAGtatga
gi|13 : taaAATAATAATATATAAATTAAAATAATTAA------AAAAGAAAG---CCAA--TAAACAATCACTATTAG-TCTTCCGTTGTAGACGGAAGACC
gi|13 : AATAATTAAAA-AAGAAAGCCAATAAACAATCACTATTAG-TCTTCCGT-TGTA-GACGG-AAGACC
gi|15 : aataataatatataaattaaGCTAC-ACA---TTAC-GCTGATG-T--GGTAGCG--A--TAG-TA---------TGGGAGCGGAATCA---------------ATGGATCTATTGTCTAATTAGATT
gi|16 : aTAATTAGAT----CCTTT-GATC-GCTCTCC-----A--TA--------C-TATCGCTAC----------------------------------------------------GGGGCGG-ATCA---------------AAGGATCTAAT-TTTAATTAGATTgcg
gi|17 : aatATAAT-AATAAGAAGAAACAGAAT-AAAAATAATATGTTCCCAAACTTTGTTTGGGAAACATAACAA-GATAAT
gi|18 : TAGAT----CCATT-GATCCGCTC-CC-----A--TA--------C-TATCGCTAC-ACA---TAGCTAT----G-T--G-TAGCT--A--TAG-TA---------Tttt
gi|19 : aaTT-GATCCGGGT-CC-----A--TA--------C-TATCCCTAC-ACA---A-AG-GC----G-T--G-TAGCGTTAACTAG-TA---------T------------------------------GGATCTAAT-TTTAATTAGATtttaattttaatt
gi|2 : AATAA-AATA-ATAA--TAAA-TAAT-AA------AAAAGAAAA---C-AA--TA--CAATCACTATAAGGTCTTC-GTTGTAGACGGAAGACCA----TTTAATAAT--AAA-AAGAAA--CAATA--CAATCACTATAAGGTCTTCCGT-TGTA-GACGGGAAGACCTTAATAATAAGAAACAGAGTAAAACCAATAT-TTGTCC---------AAACTTTCGTT-T-GGGAACATAAT-AATAA--AGAAACAGAGTTAAAAACAATATGTTCCCAAACTTTGTTTGGGGAACATAATAATAATAATAAG--AAACAGATAAAAAACAATATGTTCC--CAAAACTTT-GTTTGGGG---------AACATAATTAGAT----CCTTT-GATCCGCTC-CC-----A--TA--------C-TATCGCTAC-CTT---T-GT-GT----G-T--G-TAGCG--A--TAG-TA---------TGGGAGCGG-GTCA---------------AAGGGTCTAAT-TTTAATTAGATT
gi|20 : A---------TAGGAATGG-ATCG---------------A-GGATTTGAT-TTTAATCAGATT
gi|20 : GAGCGG-ATCG---------------A-GGATCTGAT-CTTCATCAGATTgagctgagcggatcgaggatctgatcttcatcagatt
gi|21 : aatctgattaaaatcaaatcctcgatccattcctatgagctTAATAATAAGGAAAACGAGTTAAAAAC-ATATGTTCC--CACCATTTT-TTATGGAA---------GACATAAT
gi|22 : TAATAAT--AAACAGGAAA--CAATA--CAATCACTAT-AGGTCTT-CGT-TGTAGGACGA-Aa
gi|23 : taa--G-TAGCG--A--TAG-TA---------AGGGAGCAA-ATCA---------------AAGGATCTAAT-TTTTTTTAGATT
gi|24 : ----G-T--G-TAGTG--A--TAT-TA---------TGGGAGCGG-GTCA---------------AAGTATCTAAT-TTTAATTAg
gi|25 : at-T--G-TAGAG--A--T-G-T----------TGGGGGCGG-ATCA---------------AAGGGTCTAAT-TCTAATCAG
gi|26 : aAAT--AAA-AAGAAA--CAATA--CAATCACTATAAGGTCTTCCG
gi|27 : gGAGCGG-ATCA---------------AAGGATCTAAC-TCTAATTAGATT
gi|3 : -AATA-ATAA--TAAA-TAAT-AATAATTTAGAAGAAAAACAC-AGAGTA--GAAAAACAGTAAGGTCTTCCGCAGAGGACGGAAGACCAAGACCTTAAT---------AAG------AATA---AATC---GTACGATCTTCCGTCTG-A-AACGG-AAGACCTTAA
gi|4 : aatacatctttcctgaaaatttcatgaaagtcgatcgagaaacggctgggaaaatcgaggggactgtgtaggaaaatATGTTTCTCCAAAAATTAAGCTTGGGGTTTATTACCAATGTAATGAAA------CTTA-GATCCGCTC-AC-----A--CA--------C--ATTGCTAC-ACAAGGTAGC-TT----G-T--G-CAGAG--A--TAAATA---------TGTGAGCGG-ATCA---------------AAGGAT
gi|5 : AATCAGAT----CCTC--GATCCGCTC-CT-----A--TATTTTTTGGC-TGTCGCTAC-------T-AC-TC----G-T--G-TAGCG--A--CAG-CAAAAAAAATGTAGGAGCGG-ATCG---------------A-GGATCCGAT-TTTAATCAGA
gi|6 : TATATGGTCTTCCGTGGAAGACGGAAGACC-----TT--ACA-----------------AATG--CAATCAATATATGGTTTTCTGT-TG-----------------------AAGAAGCAAAGTCAACACAATATAT--TCA---------AAAGTTT-GTTAT-GGGAACATAttaatcagattg
gi|7 : TAATTAAATGAAACTTGTAGATCCGCTC-CTCCACGA--TA--------CGCATCAATAC-A-G---T-AC-GCTTT-G-T--G-TGGCG--A--TAG-TA---------TGTGAACGG-ATCA---------------AAGGATCTAA--CTTAATTAGATT
gi|8 : atcATTAGA------CTTT-GATCCGCTT-CT-----AGTTA----------GATCGCTAC-AAG---T-GT-GC----GAT--C-TAACG--------------------TGAG-GCGG-ATCAAGGATTAATTTATTAAAGGATCTAAT-TTTAATTAGATT
gi|9 : AA---C-AA--TA--CAAACACTATAAGGTCTTCCGTTGTAGACGGAAGACC------TTAATAAT--AA----GAAA--CAATA--CAAACACTATAAGGTCTTCCGT-TGTA-GACGG-AAGACCTg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AAATACATTTTTCCTGAAATTTCATGAAAATTGATTAAGAAATGGTTCAGAAAATCGTGAGGTAAATCAAGGAAAATA
Alignments
lowQualScore : 1 1 11 1 1 333333 111 1 11 11 333333 111111 222222 4444444444444444 2222222 1 11 1 11 1 11 1 555555555 11111 11111 1111111111 44444444444444444 11111111111111111111 11111111111111111
lowQualScore : 3 3 88 3 3 888888 777 0 33 33 1 1 1 777777 0 555555 0 66 66 0 4 5 888 5 3 000000 1 3333333333333333 3333333 0 7 33 6 9 3 0 2 7 88 1 5 88 1 3 333333333 0 11111 77 4 00000 55 8888888888 33333333333333333 3 33 2 33333333333333333333 33 0 2 77777777777777777 2
lowQualScore : . . .. . . ...... ... . .. .. . . . ...... . ...... . .. .. . . . ... . . ...... . ................ ....... . . .. . . . . . . .. . . .. . . ......... . ..... .. . ..... .. .......... ................. . .. . .................... .. . . ................. .
lowQualScore : 3 3 33 3 3 333333 555 0 88 88 0 0 4 555555 1 999999 1 99 99 4 5 7 666 7 2 666666 0 5555555555555555 5555555 0 0 88 5 0 2 2 5 3 00 0 5 33 0 3 333333333 7 33333 44 0 00000 55 5555555555 88888888888888888 1 99 9 11111111111111111111 11 4 5 44444444444444444 7
consensus : AATAA-AATA-ATAA--TAAA-TAAT-AA------AAAAGAAAA---C-AA--TA--CAANCACTATAAGGTCTTCCGTTGTAGACGGAAGACCA----TTTAATAAT--AAA-AAGAAA--CAATA--CAATCACTATAAGGTCTTCCGT-TGTA-GACGG-AAGACCTTAATA-TAAGAAACANAGTAAAAACAATAT-TCGTCC---------AAACTTT-GTT-T-GGGAACATAAT-AATAA--AGAAACAGAGTCAAAAACAATATGTTCCCAAACTTTGTTTGGGGAACATAATAATAATAATAAGGAAAACGGGTNAAAAACAATATGTTCC--CAAAANTTT-GTTTGGGG---------AACGTAATTAGAT----CCTTT-GATCCGCTC-CC-----A--TA--------C-TATCGCTAC-AC---GT-ACGC----G-T--G-TAGCG--A--TAG-TA---------TGGGAGCGG-ATCA---------------AAGGATCTAAT-TTTAATTAGATT
Reference ( family-244 ) : AATAA-AATA-ATAA--TAAA-TAAT-AA------AAAAGAAAA---C-AA--TA--CAANCACTATAAGGTCTTCCGTTGTAGACGGAAGACCA----TTTAATAAT--AAA-AAGAAA--CAATA--CAATCACTATAAGGTCTTCCGT-TGTA-GACGG-AAGACCTTAATA-TAAGAAACANAGTAAAAACAATAT-TCGTCC---------AAACTTT-GTT-T-GGGAACATAAT-AATAA--AGAAACAGAGTCAAAAACAATATGTTCCCAAACTTTGTTTGGGGAACATAATAATAATAATAAGGAAAACGGGTNAAAAACAATATGTTCC--CAAAANTTT-GTTTGGGG---------AACGTAATTAGAT----CCTTT-GATCCGCTC-CC-----A--TA--------C-TATCGCTAC-AC---GT-ACGC----G-T--G-TAGCG--A--TAG-TA---------TGGGAGCGG-ATCA---------------AAGGATCTAAT-TTTAATTAGATT
gi|1 : TAATAAT--AGATAAAAAA--CTTAA--GAATAACAATAAG-TTTTCC-T-TGGA-AACGG-A-GACCT--ATA-TAAAAAACTTAAGAATAACAATAT-TCATCCGTTGAAACGAAACCTT----------AATATAATTAAAGA--AGAAACA-AGT-AAAAACAATATGTCCCCAAACTTTGTTTGTGGGACATAAT
gi|10 : tatggtcgaaacgttgtaattacctacaactttgtatttgataagtttaacaaaatatttctgtatgaaaatacgatatggacaaaatgttgcaaaaatgcagtgaaagtgttgacgtttttcggtcaggcagctttgacgcttttcgcagtgaatgaatttgattaccctgtgcacaattatgaaatctcagtctacaatccactgaaaattggaagtggatctctacagcttccaaacacttcggacaaactgacacccaaattacaaaacgtcaatattgagtaaatatttgacgtttcgaaaaagcaaaaaaatccgtataaaaattcaaagtgaatatctattcaatccctgaaaattgacaaattggacgacgcatattcgataatcgctgcacagaattttaagaaaaaaaaataagataataaATAT-TCG--C---------AGACTTT-GTT-TTGGGAGCATATT-AAT-A--AGAAACAAAACCAA----AACATGTTTCAAAACTTGATTT-GGGAACAAGATAAcaagacccaaggtcaaccaagacaagat
gi|11 : AATCAGAT----TCTT--GATCCGCTC-CC-----A--TA----------TA---CTACGAC---AA-AC-C----T-TTGG-TAGCG--A--TTGATA---------TG-----GG-AT-------------------AGATCTAAT-TTTAATTggtattttgat
gi|12 : attaAATTAGAT----CCTTT-GATCCGGGT-CC-----A--TA--------C-TATCCCTAC-AC---AA-AGGC----G-T--G-TAGCGTTAACTAG-TA---------T------------------------------GGATCTAAT-TTTAATTAGtatga
gi|13 : taaAATAATAATATATAAATTAAAATAATTAA------AAAAGAAAG---CCAA--TAAACAATCACTATTAG-TCTTCCGTTGTAGACGGAAGACC
gi|13 : AATAATTAAAA-AAGAAAGCCAATAAACAATCACTATTAG-TCTTCCGT-TGTA-GACGG-AAGACC
gi|15 : aataataatatataaattaaGCTAC-AC---ATTACGCTGATG-T--GGTAGCG--A--TAG-TA---------TGGGAGCGGAATCA---------------ATGGATCTATTGTCTAATTAGATT
gi|16 : aTAATTAGAT----CCTTT-GATC-GCTCTCC-----A--TA--------C-TATCGCTAC---------------------------------------------------GGGGCGG-ATCA---------------AAGGATCTAAT-TTTAATTAGATTgcg
gi|17 : aatATAAT-AATAAGAAGAAACAGAAT-AAAAATAATATGTTCCCAAACTTTGTTTGGGAAACATAACAA-GATAAT
gi|18 : TAGAT----CCATT-GATCCGCTC-CC-----A--TA--------C-TATCGCTAC-AC---AT-A-GCTAT-G-T--G-TAGCT--A--TAG-TA---------Tttt
gi|19 : aaTT-GATCCGGGT-CC-----A--TA--------C-TATCCCTAC-AC---AA-AGGC----G-T--G-TAGCGTTAACTAG-TA---------T------------------------------GGATCTAAT-TTTAATTAGATtttaattttaatt
gi|2 : AATAA-AATA-ATAA--TAAA-TAAT-AA------AAAAGAAAA---C-AA--TA--CAATCACTATAAGGTCTTC-GTTGTAGACGGAAGACCA----TTTAATAAT--AAA-AAGAAA--CAATA--CAATCACTATAAGGTCTTCCGT-TGTA-GACGGGAAGACCTTAATAATAAGAAACAGAGTAAAACCAATAT-TTGTCC---------AAACTTTCGTT-T-GGGAACATAAT-AATAA--AGAAACAGAGTTAAAAACAATATGTTCCCAAACTTTGTTTGGGGAACATAATAATAATAATAAG--AAACAGATAAAAAACAATATGTTCC--CAAAACTTT-GTTTGGGG---------AACATAATTAGAT----CCTTT-GATCCGCTC-CC-----A--TA--------C-TATCGCTAC-CT---TT-GTGT----G-T--G-TAGCG--A--TAG-TA---------TGGGAGCGG-GTCA---------------AAGGGTCTAAT-TTTAATTAGATT
gi|20 : A---------TAGGAATGG-ATCG---------------A-GGATTTGAT-TTTAATCAGATT
gi|20 : GAGCGG-ATCG---------------A-GGATCTGAT-CTTCATCAGATTgagctgagcggatcgaggatctgatcttcatcagatt
gi|21 : aatctgattaaaatcaaatcctcgatccattcctatgagctTAATAATAAGGAAAACGAGTTAAAAAC-ATATGTTCC--CACCATTTT-TTATGGAA---------GACATAAT
gi|22 : TAATAAT--AAACAGGAAA--CAATA--CAATCACTAT-AGGTCTT-CGT-TGTAGGACGA-Aa
gi|23 : taa--G-TAGCG--A--TAG-TA---------AGGGAGCAA-ATCA---------------AAGGATCTAAT-TTTTTTTAGATT
gi|24 : ----G-T--G-TAGTG--A--TAT-TA---------TGGGAGCGG-GTCA---------------AAGTATCTAAT-TTTAATTAg
gi|25 : at-T--G-TAGAG--A--T-G-T----------TGGGGGCGG-ATCA---------------AAGGGTCTAAT-TCTAATCAG
gi|26 : aAAT--AAA-AAGAAA--CAATA--CAATCACTATAAGGTCTTCCG
gi|27 : gGAGCGG-ATCA---------------AAGGATCTAAC-TCTAATTAGATT
gi|3 : -AATA-ATAA--TAAA-TAAT-AATAATTTAGAAGAAAAACAC-AGAGTA--GAAAAACAGTAAGGTCTTCCGCAGAGGACGGAAGACCAAGACCTTAAT---------AAG------AATA---AATC---GTACGATCTTCCGTCTG-A-AACGG-AAGACCTTAA
gi|4 : aatacatctttcctgaaaatttcatgaaagtcgatcgagaaacggctgggaaaatcgaggggactgtgtaggaaaatATGTTTCTCCAAAAATTAAGCTTGGGGTTTATTACCAATGTAATGAAA------CTTA-GATCCGCTC-AC-----A--CA--------C--ATTGCTAC-ACAAGGT-A-GCTT--G-T--G-CAGAG--A--TAAATA---------TGTGAGCGG-ATCA---------------AAGGAT
gi|5 : AATCAGAT----CCTC--GATCCGCTC-CT-----A--TATTTTTTGGC-TGTCGCTAC-------T-ACTC----G-T--G-TAGCG--A--CAG-CAAAAAAAATGTAGGAGCGG-ATCG---------------A-GGATCCGAT-TTTAATCAGA
gi|6 : TATATGGTCTTCCGTGGAAGACGGAAGACC-----TT--ACA-----------------AATG--CAATCAATATATGGTTTTCTGT-TG-----------------------AAGAAGCAAAGTCAACACAATATAT--TCA---------AAAGTTT-GTTAT-GGGAACATAttaatcagattg
gi|7 : TAATTAAATGAAACTTGTAGATCCGCTC-CTCCACGA--TA--------CGCATCAATAC-A----GT-ACGCTTT-G-T--G-TGGCG--A--TAG-TA---------TGTGAACGG-ATCA---------------AAGGATCTAA--CTTAATTAGATT
gi|8 : atcATTAGA------CTTT-GATCCGCTT-CT-----AGTTA----------GATCGCTAC-AA---GT-GTGC----GAT--C-TAACG--------------------TGAG-GCGG-ATCAAGGATTAATTTATTAAAGGATCTAAT-TTTAATTAGATT
gi|9 : AA---C-AA--TA--CAAACACTATAAGGTCTTCCGTTGTAGACGGAAGACC------TTAATAAT--AA----GAAA--CAATA--CAAACACTATAAGGTCTTCCGT-TGTA-GACGG-AAGACCTg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AAATACATTTTTCCTGAAATTTCATGAAAATTGATTAAGAAATGGTTCAGAAAATCGTGAGGTAAATCAAGGAAAATA
Alignments
lowQualScore : 1 1 11 1 1 333333 111 1 11 11 333333 111111 222222 4444444444444444 2222222 1 11 1 11 1 11 1 555555555 11111 11111 1111111111 44444444444444444 11111111111111111111 11111111111111111
lowQualScore : 3 3 88 3 3 888888 777 0 33 33 1 1 1 777777 0 555555 0 66 66 0 4 5 888 5 3 000000 1 3333333333333333 3333333 0 7 33 6 9 3 0 2 7 88 1 5 88 1 3 333333333 0 11111 77 4 00000 55 8888888888 33333333333333333 3 33 2 33333333333333333333 33 0 2 77777777777777777 2
lowQualScore : . . .. . . ...... ... . .. .. . . . ...... . ...... . .. .. . . . ... . . ...... . ................ ....... . . .. . . . . . . .. . . .. . . ......... . ..... .. . ..... .. .......... ................. . .. . .................... .. . . ................. .
lowQualScore : 3 3 33 3 3 333333 555 0 88 88 0 0 4 555555 1 999999 1 99 99 4 5 7 666 7 2 666666 0 5555555555555555 5555555 0 0 88 5 0 2 2 5 3 00 0 5 33 0 3 333333333 7 33333 44 0 00000 55 5555555555 88888888888888888 1 99 9 11111111111111111111 11 4 5 44444444444444444 7
consensus : AATAA-AATA-ATAA--TAAA-TAAT-AA------AAAAGAAAA---C-AA--TA--CAANCACTATAAGGTCTTCCGTTGTAGACGGAAGACCA----TTTAATAAT--AAA-AAGAAA--CAATA--CAATCACTATAAGGTCTTCCGT-TGTA-GACGG-AAGACCTTAATA-TAAGAAACANAGTAAAAACAATAT-TCGTCC---------AAACTTT-GTT-T-GGGAACATAAT-AATAA--AGAAACAGAGTCAAAAACAATATGTTCCCAAACTTTGTTTGGGGAACATAATAATAATAATAAGGAAAACGGGTNAAAAACAATATGTTCC--CAAAANTTT-GTTTGGGG---------AACGTAATTAGAT----CCTTT-GATCCGCTC-CC-----A--TA--------C-TATCGCTAC-AC---GT-ACGC----G-T--G-TAGCG--A--TAG-TA---------TGGGAGCGG-ATCA---------------AAGGATCTAAT-TTTAATTAGATT
Reference ( family-244 ) : AATAA-AATA-ATAA--TAAA-TAAT-AA------AAAAGAAAA---C-AA--TA--CAANCACTATAAGGTCTTCCGTTGTAGACGGAAGACCA----TTTAATAAT--AAA-AAGAAA--CAATA--CAATCACTATAAGGTCTTCCGT-TGTA-GACGG-AAGACCTTAATA-TAAGAAACANAGTAAAAACAATAT-TCGTCC---------AAACTTT-GTT-T-GGGAACATAAT-AATAA--AGAAACAGAGTCAAAAACAATATGTTCCCAAACTTTGTTTGGGGAACATAATAATAATAATAAGGAAAACGGGTNAAAAACAATATGTTCC--CAAAANTTT-GTTTGGGG---------AACGTAATTAGAT----CCTTT-GATCCGCTC-CC-----A--TA--------C-TATCGCTAC-AC---GT-ACGC----G-T--G-TAGCG--A--TAG-TA---------TGGGAGCGG-ATCA---------------AAGGATCTAAT-TTTAATTAGATT
gi|1 : TAATAAT--AGATAAAAAA--CTTAA--GAATAACAATAAG-TTTTCC-T-TGGA-AACGG-A-GACCT--ATA-TAAAAAACTTAAGAATAACAATAT-TCATCCGTTGAAACGAAACCTT----------AATATAATTAAAGA--AGAAACA-AGT-AAAAACAATATGTCCCCAAACTTTGTTTGTGGGACATAAT
gi|10 : tatggtcgaaacgttgtaattacctacaactttgtatttgataagtttaacaaaatatttctgtatgaaaatacgatatggacaaaatgttgcaaaaatgcagtgaaagtgttgacgtttttcggtcaggcagctttgacgcttttcgcagtgaatgaatttgattaccctgtgcacaattatgaaatctcagtctacaatccactgaaaattggaagtggatctctacagcttccaaacacttcggacaaactgacacccaaattacaaaacgtcaatattgagtaaatatttgacgtttcgaaaaagcaaaaaaatccgtataaaaattcaaagtgaatatctattcaatccctgaaaattgacaaattggacgacgcatattcgataatcgctgcacagaattttaagaaaaaaaaataagataataaATAT-TCG--C---------AGACTTT-GTT-TTGGGAGCATATT-AAT-A--AGAAACAAAACCAA----AACATGTTTCAAAACTTGATTT-GGGAACAAGATAAcaagacccaaggtcaaccaagacaagat
gi|11 : AATCAGAT----TCTT--GATCCGCTC-CC-----A--TA----------TA---CTACGAC---AA-AC-C----T-TTGG-TAGCG--A--TTGATA---------TG-----GG-AT-------------------AGATCTAAT-TTTAATTggtattttgat
gi|12 : attaAATTAGAT----CCTTT-GATCCGGGT-CC-----A--TA--------C-TATCCCTAC-AC---AA-AGGC----G-T--G-TAGCGTTAACTAG-TA---------T------------------------------GGATCTAAT-TTTAATTAGtatga
gi|13 : taaAATAATAATATATAAATTAAAATAATTAA------AAAAGAAAG---CCAA--TAAACAATCACTATTAG-TCTTCCGTTGTAGACGGAAGACC
gi|13 : AATAATTAAAA-AAGAAAGCCAATAAACAATCACTATTAG-TCTTCCGT-TGTA-GACGG-AAGACC
gi|15 : aataataatatataaattaaGCTAC-AC---ATTACGCTGATG-T--GGTAGCG--A--TAG-TA---------TGGGAGCGGAATCA---------------ATGGATCTATTGTCTAATTAGATT
gi|16 : aTAATTAGAT----CCTTT-GATC-GCTCTCC-----A--TA--------C-TATCGCTAC---------------------------------------------------GGGGCGG-ATCA---------------AAGGATCTAAT-TTTAATTAGATTgcg
gi|17 : aatATAAT-AATAAGAAGAAACAGAAT-AAAAATAATATGTTCCCAAACTTTGTTTGGGAAACATAACAA-GATAAT
gi|18 : TAGAT----CCATT-GATCCGCTC-CC-----A--TA--------C-TATCGCTAC-AC---AT-A-GCTAT-G-T--G-TAGCT--A--TAG-TA---------Tttt
gi|19 : aaTT-GATCCGGGT-CC-----A--TA--------C-TATCCCTAC-AC---AA-AGGC----G-T--G-TAGCGTTAACTAG-TA---------T------------------------------GGATCTAAT-TTTAATTAGATtttaattttaatt
gi|2 : AATAA-AATA-ATAA--TAAA-TAAT-AA------AAAAGAAAA---C-AA--TA--CAATCACTATAAGGTCTTC-GTTGTAGACGGAAGACCA----TTTAATAAT--AAA-AAGAAA--CAATA--CAATCACTATAAGGTCTTCCGT-TGTA-GACGGGAAGACCTTAATAATAAGAAACAGAGTAAAACCAATAT-TTGTCC---------AAACTTTCGTT-T-GGGAACATAAT-AATAA--AGAAACAGAGTTAAAAACAATATGTTCCCAAACTTTGTTTGGGGAACATAATAATAATAATAAG--AAACAGATAAAAAACAATATGTTCC--CAAAACTTT-GTTTGGGG---------AACATAATTAGAT----CCTTT-GATCCGCTC-CC-----A--TA--------C-TATCGCTAC-CT---TT-GTGT----G-T--G-TAGCG--A--TAG-TA---------TGGGAGCGG-GTCA---------------AAGGGTCTAAT-TTTAATTAGATT
gi|20 : A---------TAGGAATGG-ATCG---------------A-GGATTTGAT-TTTAATCAGATT
gi|20 : GAGCGG-ATCG---------------A-GGATCTGAT-CTTCATCAGATTgagctgagcggatcgaggatctgatcttcatcagatt
gi|21 : aatctgattaaaatcaaatcctcgatccattcctatgagctTAATAATAAGGAAAACGAGTTAAAAAC-ATATGTTCC--CACCATTTT-TTATGGAA---------GACATAAT
gi|22 : TAATAAT--AAACAGGAAA--CAATA--CAATCACTAT-AGGTCTT-CGT-TGTAGGACGA-Aa
gi|23 : taa--G-TAGCG--A--TAG-TA---------AGGGAGCAA-ATCA---------------AAGGATCTAAT-TTTTTTTAGATT
gi|24 : ----G-T--G-TAGTG--A--TAT-TA---------TGGGAGCGG-GTCA---------------AAGTATCTAAT-TTTAATTAg
gi|25 : at-T--G-TAGAG--A--T-G-T----------TGGGGGCGG-ATCA---------------AAGGGTCTAAT-TCTAATCAG
gi|26 : aAAT--AAA-AAGAAA--CAATA--CAATCACTATAAGGTCTTCCG
gi|27 : gGAGCGG-ATCA---------------AAGGATCTAAC-TCTAATTAGATT
gi|3 : -AATA-ATAA--TAAA-TAAT-AATAATTTAGAAGAAAAACAC-AGAGTA--GAAAAACAGTAAGGTCTTCCGCAGAGGACGGAAGACCAAGACCTTAAT---------AAG------AATA---AATC---GTACGATCTTCCGTCTG-A-AACGG-AAGACCTTAA
gi|4 : aatacatctttcctgaaaatttcatgaaagtcgatcgagaaacggctgggaaaatcgaggggactgtgtaggaaaatATGTTTCTCCAAAAATTAAGCTTGGGGTTTATTACCAATGTAATGAAA------CTTA-GATCCGCTC-AC-----A--CA--------C--ATTGCTAC-ACAAGGT-A-GCTT--G-T--G-CAGAG--A--TAAATA---------TGTGAGCGG-ATCA---------------AAGGAT
gi|5 : AATCAGAT----CCTC--GATCCGCTC-CT-----A--TATTTTTTGGC-TGTCGCTAC-------T-ACTC----G-T--G-TAGCG--A--CAG-CAAAAAAAATGTAGGAGCGG-ATCG---------------A-GGATCCGAT-TTTAATCAGA
gi|6 : TATATGGTCTTCCGTGGAAGACGGAAGACC-----TT--ACA-----------------AATG--CAATCAATATATGGTTTTCTGT-TG-----------------------AAGAAGCAAAGTCAACACAATATAT--TCA---------AAAGTTT-GTTAT-GGGAACATAttaatcagattg
gi|7 : TAATTAAATGAAACTTGTAGATCCGCTC-CTCCACGA--TA--------CGCATCAATAC-A----GT-ACGCTTT-G-T--G-TGGCG--A--TAG-TA---------TGTGAACGG-ATCA---------------AAGGATCTAA--CTTAATTAGATT
gi|8 : atcATTAGA------CTTT-GATCCGCTT-CT-----AGTTA----------GATCGCTAC-AA---GT-GTGC----GAT--C-TAACG--------------------TGAG-GCGG-ATCAAGGATTAATTTATTAAAGGATCTAAT-TTTAATTAGATT
gi|9 : AA---C-AA--TA--CAAACACTATAAGGTCTTCCGTTGTAGACGGAAGACC------TTAATAAT--AA----GAAA--CAATA--CAAACACTATAAGGTCTTCCGT-TGTA-GACGG-AAGACCTg
blockSeqs : . . . . . TAATTT ACA . AG . T T T AAGACC TAAAA GC AA G C TAG G A TAATAA G TTGTCC GTTTT . A GA A C A G T GA T . TC T A TTTATTACC TGAAA TA T CCACG GT TTTTTTGGC ACATTACGCTGAT A . G ACAGCAAAAAAAATG GG A AGGATTAATTTATTAAA G
blockSeqs : . . . . . . . . . . A A A T AAAC . . G . TA . A . A ATTCA CGTTT . A . G T A G T . A . . T T . . . CG ACAAGGTAGCTT . . . TTAACTAGTA GG . AT .
blockSeqs : . . . . A G A . AAA . . G . TA . A TCGC GTTAT . . . G . . . T T . . . C ACATAGCTAT . . . TTAACTAGTA AG . AA .
blockSeqs : T T AAA . . A . TA . A T T . . . C AGTACGCTTT . . . ATAAATA GG . AA .
blockSeqs : AA . . G . A . . T T . . . C ACAAAGGC . . . ATAGTA GG . AA .
blockSeqs : . . . G . . . T T . . . C ACAAAGGC . . . ATAGTA GG . AA .
blockSeqs : . . . . . A . . . C CTTTGTGT . . . ATAGTA GT . AA .
blockSeqs : . T . . . C AAGTGTGC . . . ATAGTA AG . AA .
blockSeqs : . . . . . TACTC . . . ATATTA GT . AA .
blockSeqs : . . . . ATAGTA GA . AA .
blockSeqs : . . . ATGT G . A .
blockSeqs : . . . . . . A .
blockSeqs : . . . . . A .
blockSeqs : . . .
blockSeqs : . .
blockSeqCons : AAA*** T* C********* ** ATAGTA************** GG AA***************
originalCons : AATAA-AATA-ATAA--TAAA-TAAT-AA------AAAAGAAAA---C-AA--TA--CAANCACTATAAGGTCTTCCGTTGTAGACGGAAGACCA----TTTAATAAT--AAA-AAGAAA--CAATA--CAATCACTATAAGGTCTTCCGT-TGTA-GACGG-AAGACCTTAATA-TAAGAAACANAGTAAAAACAATAT-TCGTCC---------AAACTTT-GTT-T-GGGAACATAAT-AATAA--AGAAACAGAGTCAAAAACAATATGTTCCCAAACTTTGTTTGGGGAACATAATAATAATAATAAGGAAAACGGGTNAAAAACAATATGTTCC--CAAAANTTT-GTTTGGGG---------AACGTAATTAGAT----CCTTT-GATCCGCTC-CC-----A--TA--------C-TATCGCTAC-AC---GT-ACGC----G-T--G-TAGCG--A--TAG-TA---------TGGGAGCGG-ATCA---------------AAGGATCTAAT-TTTAATTAGATT
finalCons : AATAA-AATA-ATAA--TAAA-TAAT-AA------AAAAGAAAA---C-AA--TA--CAANCACTATAAGGTCTTCCGTTGTAGACGGAAGACCA----TTTAATAATAAA---AAGAAA--CAATA--CAATCACTATAAGGTCTTCCGT-TGTA-GACGG-AAGACCTTAATA-TAAGAAACANAGTAAAAACAATAT-TCGTCC---------AAACTTT-GTT-T-GGGAACATAAT-AATAA--AGAAACAGAGTCAAAAACAATATGTTCCCAAACTTTGTTTGGGGAACATAATAATAATAATAAGGAAAACGGGTNAAAAACAATATGTTCC--CAAAANTTT-GTTTGGGG---------AACGTAATTAGAT----CCTTT-GATCCGCTC-CC-----A--TAC---------TATCGCTAC-AC---GT-ACGC----G-T--G-TAGCGATAGTA--------------TGGGAGCGG-ATCAAA---------------GGATCTAAT-TTTAATTAGATT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AAATACATTTTTCCTGAAATTTCATGAAAATTGATTAAGAAATGGTTCAGAAAATCGTGAGGTAAATCAAGGAAAATA
Alignments
lowQualScore : 1 1 11 1 1 333333 111 1 11 11 333333 111111 222222 4444444444444444 2222222 1 11 1 11 1 11 1 555555555 11111 11111 1111111111 44444444444444444 11111111111111111111 11111111111111111
lowQualScore : 3 3 88 3 3 888888 777 0 33 33 1 1 1 777777 0 555555 0 66 66 0 4 5 888 5 3 000000 1 3333333333333333 3333333 0 7 33 6 9 3 0 2 7 88 1 5 88 1 3 333333333 0 11111 77 4 00000 55 8888888888 33333333333333333 3 33 2 33333333333333333333 33 0 2 77777777777777777 2
lowQualScore : . . .. . . ...... ... . .. .. . . . ...... . ...... . .. .. . . . ... . . ...... . ................ ....... . . .. . . . . . . .. . . .. . . ......... . ..... .. . ..... .. .......... ................. . .. . .................... .. . . ................. .
lowQualScore : 3 3 33 3 3 333333 555 0 88 88 0 0 4 555555 1 999999 1 99 99 4 5 7 666 7 2 666666 0 5555555555555555 5555555 0 0 88 5 0 2 2 5 3 00 0 5 33 0 3 333333333 7 33333 44 0 00000 55 5555555555 88888888888888888 1 99 9 11111111111111111111 11 4 5 44444444444444444 7
consensus : AATAA-AATA-ATAA--TAAA-TAAT-AA------AAAAGAAAA---C-AA--TA--CAANCACTATAAGGTCTTCCGTTGTAGACGGAAGACCA----TTTAATAAT--AAA-AAGAAA--CAATA--CAATCACTATAAGGTCTTCCGT-TGTA-GACGG-AAGACCTTAATA-TAAGAAACANAGTAAAAACAATAT-TCGTCC---------AAACTTT-GTT-T-GGGAACATAAT-AATAA--AGAAACAGAGTCAAAAACAATATGTTCCCAAACTTTGTTTGGGGAACATAATAATAATAATAAGGAAAACGGGTNAAAAACAATATGTTCC--CAAAANTTT-GTTTGGGG---------AACGTAATTAGAT----CCTTT-GATCCGCTC-CC-----A--TA--------C-TATCGCTAC-AC---GT-ACGC----G-T--G-TAGCG--A--TAG-TA---------TGGGAGCGG-ATCA---------------AAGGATCTAAT-TTTAATTAGATT
Reference ( family-244 ) : AATAA-AATA-ATAA--TAAA-TAAT-AA------AAAAGAAAA---C-AA--TA--CAANCACTATAAGGTCTTCCGTTGTAGACGGAAGACCA----TTTAATAAT--AAA-AAGAAA--CAATA--CAATCACTATAAGGTCTTCCGT-TGTA-GACGG-AAGACCTTAATA-TAAGAAACANAGTAAAAACAATAT-TCGTCC---------AAACTTT-GTT-T-GGGAACATAAT-AATAA--AGAAACAGAGTCAAAAACAATATGTTCCCAAACTTTGTTTGGGGAACATAATAATAATAATAAGGAAAACGGGTNAAAAACAATATGTTCC--CAAAANTTT-GTTTGGGG---------AACGTAATTAGAT----CCTTT-GATCCGCTC-CC-----A--TA--------C-TATCGCTAC-AC---GT-ACGC----G-T--G-TAGCG--A--TAG-TA---------TGGGAGCGG-ATCA---------------AAGGATCTAAT-TTTAATTAGATT
gi|1 : TAATAAT--AGATAAAAAA--CTTAA--GAATAACAATAAG-TTTTCC-T-TGGA-AACGG-A-GACCT--ATA-TAAAAAACTTAAGAATAACAATAT-TCATCCGTTGAAACGAAACCTT----------AATATAATTAAAGA--AGAAACA-AGT-AAAAACAATATGTCCCCAAACTTTGTTTGTGGGACATAAT
gi|10 : tatggtcgaaacgttgtaattacctacaactttgtatttgataagtttaacaaaatatttctgtatgaaaatacgatatggacaaaatgttgcaaaaatgcagtgaaagtgttgacgtttttcggtcaggcagctttgacgcttttcgcagtgaatgaatttgattaccctgtgcacaattatgaaatctcagtctacaatccactgaaaattggaagtggatctctacagcttccaaacacttcggacaaactgacacccaaattacaaaacgtcaatattgagtaaatatttgacgtttcgaaaaagcaaaaaaatccgtataaaaattcaaagtgaatatctattcaatccctgaaaattgacaaattggacgacgcatattcgataatcgctgcacagaattttaagaaaaaaaaataagataataaATAT-TCG--C---------AGACTTT-GTT-TTGGGAGCATATT-AAT-A--AGAAACAAAACCAA----AACATGTTTCAAAACTTGATTT-GGGAACAAGATAAcaagacccaaggtcaaccaagacaagat
gi|11 : AATCAGAT----TCTT--GATCCGCTC-CC-----A--TA----------TA---CTACGAC---AA-AC-C----T-TTGG-TAGCG--A--TTGATA---------TG-----GG-AT-------------------AGATCTAAT-TTTAATTggtattttgat
gi|12 : attaAATTAGAT----CCTTT-GATCCGGGT-CC-----A--TA--------C-TATCCCTAC-AC---AA-AGGC----G-T--G-TAGCGTTAACTAG-TA---------T------------------------------GGATCTAAT-TTTAATTAGtatga
gi|13 : taaAATAATAATATATAAATTAAAATAATTAA------AAAAGAAAG---CCAA--TAAACAATCACTATTAG-TCTTCCGTTGTAGACGGAAGACC
gi|13 : AATAATTAAAA-AAGAAAGCCAATAAACAATCACTATTAG-TCTTCCGT-TGTA-GACGG-AAGACC
gi|15 : aataataatatataaattaaGCTAC-AC---ATTACGCTGATG-T--GGTAGCG--A--TAG-TA---------TGGGAGCGGAATCA---------------ATGGATCTATTGTCTAATTAGATT
gi|16 : aTAATTAGAT----CCTTT-GATC-GCTCTCC-----A--TA--------C-TATCGCTAC---------------------------------------------------GGGGCGG-ATCA---------------AAGGATCTAAT-TTTAATTAGATTgcg
gi|17 : aatATAAT-AATAAGAAGAAACAGAAT-AAAAATAATATGTTCCCAAACTTTGTTTGGGAAACATAACAA-GATAAT
gi|18 : TAGAT----CCATT-GATCCGCTC-CC-----A--TA--------C-TATCGCTAC-AC---AT-A-GCTAT-G-T--G-TAGCT--A--TAG-TA---------Tttt
gi|19 : aaTT-GATCCGGGT-CC-----A--TA--------C-TATCCCTAC-AC---AA-AGGC----G-T--G-TAGCGTTAACTAG-TA---------T------------------------------GGATCTAAT-TTTAATTAGATtttaattttaatt
gi|2 : AATAA-AATA-ATAA--TAAA-TAAT-AA------AAAAGAAAA---C-AA--TA--CAATCACTATAAGGTCTTC-GTTGTAGACGGAAGACCA----TTTAATAAT--AAA-AAGAAA--CAATA--CAATCACTATAAGGTCTTCCGT-TGTA-GACGGGAAGACCTTAATAATAAGAAACAGAGTAAAACCAATAT-TTGTCC---------AAACTTTCGTT-T-GGGAACATAAT-AATAA--AGAAACAGAGTTAAAAACAATATGTTCCCAAACTTTGTTTGGGGAACATAATAATAATAATAAG--AAACAGATAAAAAACAATATGTTCC--CAAAACTTT-GTTTGGGG---------AACATAATTAGAT----CCTTT-GATCCGCTC-CC-----A--TA--------C-TATCGCTAC-CT---TT-GTGT----G-T--G-TAGCG--A--TAG-TA---------TGGGAGCGG-GTCA---------------AAGGGTCTAAT-TTTAATTAGATT
gi|20 : A---------TAGGAATGG-ATCG---------------A-GGATTTGAT-TTTAATCAGATT
gi|20 : GAGCGG-ATCG---------------A-GGATCTGAT-CTTCATCAGATTgagctgagcggatcgaggatctgatcttcatcagatt
gi|21 : aatctgattaaaatcaaatcctcgatccattcctatgagctTAATAATAAGGAAAACGAGTTAAAAAC-ATATGTTCC--CACCATTTT-TTATGGAA---------GACATAAT
gi|22 : TAATAAT--AAACAGGAAA--CAATA--CAATCACTAT-AGGTCTT-CGT-TGTAGGACGA-Aa
gi|23 : taa--G-TAGCG--A--TAG-TA---------AGGGAGCAA-ATCA---------------AAGGATCTAAT-TTTTTTTAGATT
gi|24 : ----G-T--G-TAGTG--A--TAT-TA---------TGGGAGCGG-GTCA---------------AAGTATCTAAT-TTTAATTAg
gi|25 : at-T--G-TAGAG--A--T-G-T----------TGGGGGCGG-ATCA---------------AAGGGTCTAAT-TCTAATCAG
gi|26 : aAAT--AAA-AAGAAA--CAATA--CAATCACTATAAGGTCTTCCG
gi|27 : gGAGCGG-ATCA---------------AAGGATCTAAC-TCTAATTAGATT
gi|3 : -AATA-ATAA--TAAA-TAAT-AATAATTTAGAAGAAAAACAC-AGAGTA--GAAAAACAGTAAGGTCTTCCGCAGAGGACGGAAGACCAAGACCTTAAT---------AAG------AATA---AATC---GTACGATCTTCCGTCTG-A-AACGG-AAGACCTTAA
gi|4 : aatacatctttcctgaaaatttcatgaaagtcgatcgagaaacggctgggaaaatcgaggggactgtgtaggaaaatATGTTTCTCCAAAAATTAAGCTTGGGGTTTATTACCAATGTAATGAAA------CTTA-GATCCGCTC-AC-----A--CA--------C--ATTGCTAC-ACAAGGT-A-GCTT--G-T--G-CAGAG--A--TAAATA---------TGTGAGCGG-ATCA---------------AAGGAT
gi|5 : AATCAGAT----CCTC--GATCCGCTC-CT-----A--TATTTTTTGGC-TGTCGCTAC-------T-ACTC----G-T--G-TAGCG--A--CAG-CAAAAAAAATGTAGGAGCGG-ATCG---------------A-GGATCCGAT-TTTAATCAGA
gi|6 : TATATGGTCTTCCGTGGAAGACGGAAGACC-----TT--ACA-----------------AATG--CAATCAATATATGGTTTTCTGT-TG-----------------------AAGAAGCAAAGTCAACACAATATAT--TCA---------AAAGTTT-GTTAT-GGGAACATAttaatcagattg
gi|7 : TAATTAAATGAAACTTGTAGATCCGCTC-CTCCACGA--TA--------CGCATCAATAC-A----GT-ACGCTTT-G-T--G-TGGCG--A--TAG-TA---------TGTGAACGG-ATCA---------------AAGGATCTAA--CTTAATTAGATT
gi|8 : atcATTAGA------CTTT-GATCCGCTT-CT-----AGTTA----------GATCGCTAC-AA---GT-GTGC----GAT--C-TAACG--------------------TGAG-GCGG-ATCAAGGATTAATTTATTAAAGGATCTAAT-TTTAATTAGATT
gi|9 : AA---C-AA--TA--CAAACACTATAAGGTCTTCCGTTGTAGACGGAAGACC------TTAATAAT--AA----GAAA--CAATA--CAAACACTATAAGGTCTTCCGT-TGTA-GACGG-AAGACCTg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AAATACATTTTTCCTGAAATTTCATGAAAATTGATTAAGAAATGGTTCAGAAAATCGTGAGGTAAATCAAGGAAAATA