lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 55555555555555555555555 1111 222222222 1 444444444444 4444444444444 33 44 22 1 1 333333 66666666 3333 111 5555555555555555555 3333333333 1111 22222222 333333333333333333 1111 111 1111111 6666666666666666666666666666 111 11 2 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2222 111 111 111 9999999999999999999999999999999999999999999999999999999999999999999999 22 33333 11 444 22 1 1111 1 1111 1111 2222222 1111 6666666 111 1 22222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111 2 222 22 1111 22222 5555555555555555 666666666 333333 1 666666666666666666666666666666666 11 2 33 444444 1 1 444 666666666666666666666666 33 111111111111 66666666666666666666666666666666666 11 1 11 333333333 11 22222 1 66666 2222222 11 1 1 44 1 2 444 1 1111 111 111
lowQualScore : 1 5 5 11111111111111111111111 0000 4 888888888 5 0 5 999999999999 4444444444444 1 4 5 1 55 5 22 5 5 5 5 77 0 22 777 77 1 3 8 77 1 333333 5 11111111 0 888 1111 000 5 77 1 77 5 9999999999999999999 3333333333 77 5 5 5 2222 66666666 111111111111111111 5 0 2222 5 8 000 5 8888888 5 5 4444444444444444444444444444 111 00 4 6 6 6 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 6 99 3333 111 111 99 111 6666666666666666666666666666666666666666666666666666666666666666666666 2 6 66 8 8 3 77777 66 333 11 5 9999 2 6 5555 6 44 2222 0 9999999 0 0 7777 8 8 0 4444444 8 8 0 0 0 999 3 3 66666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 55555 2 5 444 44 5555 55555 0 0 8888888888888888 333333333 000000 0 999999999999999999999999999999999 88 4 77 8 000000 3 5 7 0 8 6 6 6 333 6 6 666666666666666666666666 9 3 77 2 6 6 6 6 777777777777 77777777777777777777777777777777777 33 0 2 22 999999999 00 2 66666 0 77777 3333333 33 5 0 33 7 1 444 4 6 5555 1 3 2 444 555 6 6 6 6
lowQualScore : . . . ....................... .... . ......... . . . ............ ............. . . . . .. . .. . . . . .. . .. ... .. . . . .. . ...... . ........ . ... .... ... . .. . .. . ................... .......... .. . . . .... ........ .................. . . .... . . ... . ....... . . ............................ ... .. . . . . .......................................................................................................................................................................................... . .. .... ... ... .. ... ...................................................................... . . .. . . . ..... .. ... .. . .... . . .... . .. .... . ....... . . .... . . . ....... . . . . . ... . . ................................................................................... . ..... . . ... .. .... ..... . . ................ ......... ...... . ................................. .. . .. . ...... . . . . . . . . ... . . ........................ . . .. . . . . . ............ ................................... .. . . .. ......... .. . ..... . ..... ....... .. . . .. . . ... . . .... . . . ... ... . . . .
lowQualScore : 4 7 7 55555555555555555555555 6666 4 999999999 0 0 0 999999999999 3333333333333 4 3 7 4 00 7 11 7 7 7 0 11 7 99 999 11 4 9 7 99 4 999999 7 00000000 1 666 9999 000 7 99 7 99 7 6666666666666666666 4444444444 99 7 7 7 1111 00000000 666666666666666666 7 7 1111 7 7 000 7 6666666 7 7 2222222222222222222222222222 777 00 8 7 7 7 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 7 22 5555 777 777 22 555 7777777777777777777777777777777777777777777777777777777777777777777777 5 7 33 0 0 8 88888 88 666 55 5 5555 0 7 0000 7 44 6666 8 4444444 8 8 8888 0 0 8 0000000 0 0 8 8 8 444 2 6 00000000000000000000000000000000000000000000000000000000000000000000000000000000000 2 55555 5 2 888 88 2222 88888 8 2 8888888888888888 555555555 000000 0 888888888888888888888888888888888 55 0 66 0 222222 2 5 0 0 0 7 7 7 333 7 7 222222222222222222222222 8 2 33 5 7 7 7 7 222222222222 88888888888888888888888888888888888 22 0 5 55 555555555 00 2 55555 0 55555 2222222 00 5 0 88 0 2 555 5 0 0000 0 3 5 555 777 7 7 7 7
consensus : AGAAACAGGGCGC-A-CAA-----G---GTA----A---C--ATCC----CCCG-CTT--G----C-TA-TACCT-GGACTTTTA-AAAAGGA-AACGACAACTGAAAATTAACGAAA-GAT--AACCCAAGTT-GTATGTGATACA--GT-CAGTC-ACTAAAGTT-ATATCC-T-GAC-AAGAGC-GTGTGT-TTGATGACA-AAGTA-TTCGAGG--TA-ATATA--T--GAGGTATTT-GTC---TTC-AATCTTC--GTGAT--TATGAAAT---ATAATTT-TTA--TTCACTTGAA--TGGA-GGA---------------A--TGTAGAAT-------TTT--TGT-G-AC-AAC----AGACC--T---ACAAAGA------G----------CA-CATGTCCCGCTA----CT-TCCCG---AA-AT-------GATA-GAAA-GC----TCT--ACT----------------AATGA---TTTTCTTTCGAAC-CGC-TCTG-TATA-TTCTG---A----------------TA----------------TT-------------C--------------A---T---TA-TT-G---AG-CA--------------TTTTT-CT------ACT-GCAAT-CCCCGGTGC-------------TTA-AAC---TT--AC--------CGTT---TTT-G-TT--TTGCC--C-TT---AACT---GC--TTTTTA-CACAAA-----ACA-CACACA-TC-ACACGAT--TGGGGAACTGGCAT--TCTT-NTGTTTTG-G--TTAT-TTT-TAGCCCTA-TTTTCGAA-CTTGCA-TG-TACAC-TC-TGANTGAAAAAA-TTCTAACAAAATTCATTGAC-CCGCCGCCTT-TATA-ATT-GAAAAAAAAAAA-T-TATGAATGTT-ATTTTTATTG-TT-AA-TAAA-ATAAAAT--T--TTAAAAAGGA-TTTT-GCAGGATTCG-AACACACCTCCTCAGATCAGTTACAACACACAA-AA-A----A--CA-------TACACGCCTAAC-CA---------CAC-TTCG-CTACCCGCG----TGATTTA-AT-AGTA-TTCGAA-GGT-TTAAATTTGACTTCGATG-AAAAGGAA---GTA-AATGCCTA-AAGTTTT---TCTT-TAAAAAGT---GTGTTTTTT-GTATATA-ATGG-GTCCAG-TC-TCCATTTTTTT---AAAACATGAAAATAGGATATACAGA-GGTTCACAACTATCATTTTAAACC-T-TCTTT-AGAA-TG-GAG---AC-TT-GACCCACTCAT-AT-TTC--AA---TCA--A---TCAATGTTTTAA-TGGCTAT-T-TT-A-CACC----TAT-T---TTTCATCGAAAC-TGCG-TAT-GAGC----TATGTTT--AACG--C-CCATT-ATTAATCAA-ACCTCAATTAATTTAGA--------TATAGAGAATCTTATATTTGGT-GTAGGT--TGAG-A-TCA-CCGACTAACTCATTTTTCATAA-TAG--AACCGAATTTTTTGTC--GTTTTGAAATTTTTA-AGATATCCTGTGTCCTCAGAGCGGGGGATTTGC-CCCGCC-TT-G-T-GCGCCCAGATTCTT
Reference ( gi|1 ) : AGAAACAGGGCGC-A-CAA-----G---GTA----A------ATCC----CCCG-CTT-TG----C-TA-TACCT-GGACTTTTACAAAAGGAGAACGACAACTGAAAATTAACGAAA-GAT--AACCCAAGTT-GTATGTGATACAC-GT-CAGT--ACTAAAGTT-ATATCC-T-GAC-AAGAGCGGTGTGT-TTGATGACA-AAGTA-TTCAAAG--TA-ATAT---T--GAGGTATTT-GTCAAATTCTAATCTTC--GTGAT--TATGAAAT---ATAATTT-TTA--TTCACTTGAA--TGGA-GG----------------A--TGTAGAAT-------TTT--TGT-G-AC-AAC----AGA-C--T---ACAAAGA------G----------CA-CATGTCCCGCTA----CT-TTCCG---AA-AT-------GATA-GAAA-GC----T-T--ACT----------------AATGA---TTTCTTTTCGAACTCGC-TCTG-TATA-TTCTG---A----------------T-----------------TT-------------C--------------A---T---TA-TT-G---AG-CA--------------TTTT--CT------ACT-GCAAT-CCCCGATGC-------------TTA-AAC---TT--AC--------CGTT---TTT-G-TT--TTGCC--T-TT---AACT---GC--TTTTTA-CACAAA---CTACA-CACACA-TC-CTACGAT--TGGGGAACTCGCAT--ACTTCATGTGTTGCG--TTAT-TGT-TAGCCCTA-TTTTCGAACCTTGCA-TG-TACACATCATGATTGAAAACACTTCTAACAAAATTCATTGAC-CCGCCGCCTT-TATA-ATT-GAAAAAAAAAAA-T-TATGAATG-T-ATTCTTATTG-TT-AA-TAAA-ATAAAAT--TTCTTAAAAAGGA-TTTT-GCAGGATTCG-AACACACCTCCTCAGAT-AGTTACAAGACACAA-AA-A----A--CAG------TACATGCCTAAC-C----------CAC-TTCG-CTACCCGCGCT--TGATTTA-AT-AGTACTTCGGC-GGTATTAATTCTGACTTC-AT--AAAAGGAA---GTAGAGTGCCT--AAGTTTTCTCTCTTCTAAAAAGT---G-GTTTTTT-GTATAT--ATGGAGTCCA--TC-TCCATTTTTTT---GAAACATG-AAAT-GGATTAACAGA-GGTTTACAACTATCATTTTAAACC-T-TCTTT-AGAA-TG-GAG--GAC-TT-GACCCACTCATCAT-TTC--AAC--TCA--A---TCAATGTTTTAACTGGCTAT-T-TT-A-CACC----TAT-T---TTTCATCAAAACTTGTGCTGT-GAGC----T-TGTTT--AACA--C-CCATT-ATTAATCAA-ACCTCAATTAATTTAGA--------TATAGAAAATCTTATATTTGGT-GTAGGTCATGAG-A-TCAACCGACTAACTCATTTTTCATAA-TAG-TAACCGATTTTTGTGTCTTATTTCGAAATTTTTA-AGATACCCTGTGTCCTCAGAGCGGGGGATTTGC-CTCGCC-TT-G-T-GCGCCCAGATTCTT
gi|8 : AGAAACAGGGCGC-A-CAA-----------C----A------ATCC----CCCG-C-T-TA----C-TA-TACCT-GGACT-----------------ACAACTGAAAATTAACGAAA-GATTAAACCC-AGTT-GTATGTGATACA--GT-CAGTC-ACTAAAGTT-ATATCC-TAGAC-AAGAGC-GTGTGT-TTGATGACA-AAGTA-TTCGAGG--TA-ATATATAT--GAGGTATTTGGTC--ATTC-AATCTTC--GTGA---TATGAAAT---ATAATTT-TTA--TTCACTTGAA--TGGA-GGA---------------A--TGTAG-AT-------TTT--TGT-G-AC-AAC----AGACC--T---GCAAAGA------G----------CA-CATGTCCCGCTA----CT-TCCCG---AA-AT-------GATA-GAAA-GC----TCT--ACTA---------------AATGA---TTTTCTTTCGAAC-CGC-TCTG-TATA-TTCTG---A----------------TA----------------TT-------------C--------------A---
gi|10 : aAGAAACAGGG----A-CAA-----CC--GTATACCA------ATCC----CC-G-CTTACA----C-TA-AACCT-GGACTTTTA-AAAAG--GACCGA-AACTGAAAATGAAC------AT--GA-CCAAGTT-GTATGT----TAA-GTCCAGTC-ACT-AAGTT-ATAT-C-T-G-C--AGAGC-GTGTGTCTTGACGAC--AAGTA-TTCGAGG--T--ACA----T--GAGGTACTT-GT----TTC--ATCTTT---TGCTGGTATTAAAT---ATGATTacagttatcacatattatttg
gi|13 : aaaAGAATCAGAGTGC-A-CAA-----G---GTA----A------TGCCAAACCCCG-C---------C-TACTACCT-GGACTTTTA-AAAAGGA--ACGACAACTGAAAATTAAC
gi|15 : aAGAATCTGGGCGC-A-CAATGCAGG---GCA----A------ATCC----CCCG-CTC-TG----
gi|3 : atcctgtgtctGAAACAGG-CGC-AGCAA-----G---GTA----ATCACC-ATCC----CCCGGCT---G----C-TA-TACCTTGGACTTT--CAAAAAG-GAACGACAACTGAAAATTAACGA-----------------T-GTATGTGATACA--GT-CAGTC-ACTAA-GTT-AT--CC-T-GAC-AAGAGGCGTGT-T-TTGATGACATACGTAATTCGA-G--TATATATA--T--GAGGTATTT-GTCGA--TC--ATCT-C--GTGAT---ATGAAAT---A-AATTT-TT---TTC-TTTGAA--TGGA-GG----------------AA-TGTAG----------TTT--TGT-GGAC-AAC----AGA-C--CTA-ACAAAGA------G----------CA-CATATCCCGCTA----CT-C-CCG---AA-AT-------GATA-GAAA-GC----TCT--ACT----------------AATGA---TTTTCTGTCGGAACCGC-TCTA-TTTAATTCTG---A----------------TA----------------TT-------------CCAACATTTACACATA---T---TA-TT-G---AG-CA--------------TTTTTTCT------ACT-GCAAT-CTC--GTGC-------------TTA-A-----CT--AA--------CGTT---TT--G-TT--T-GCC--C-TTGTAAACT---GC--TTTT-A-CACAAA-----ACA-CA-ACAATC-ACACGAT--TGGG-AACTGGCATTGACCT--TGT-TTG-G--TTAT-C---TAGCC-TA-TTTTCGA--CTT-CA-TG-TACA--TC-TGAATGAAAAAA-TTCTAGCAAAAT-CATTGAC-C-GCCGC-TT-TATATATT-GAAAAAAAAAAAAT-TATGGATG-T-ATTGT-ATTGGTT-AAATAAACATAAAAT--TT---AAAAAGGA-TTTTTGC-GGAT-CG-AACACACT--CTCAGAT-AGT-ACAACATAAAA-AA-A----AAACA-------TACACGC-TAAC-C-----------AC-TTGGGCT--CCACA----TAATTTT--T-AGTA-TTCGAA-GGT-TTAAATTTGACTTC-ATGAAAAAGGAAACAGTAAAATGCA---AAGTTTT---TCTT-TAAAAAGT---GTGTTTTTTTGTATACTAATGG--TCCAA-TC-TC-ATTCTTTTTAAAAAACATG-AAATAGGATATACAGA-GGTT-ACA-CTA-CATTTCAACCT-T-TCTTT-AAAACTG-GAG---AC-TT-GACCAAATCA--AC-TTC--AATATTCA--AAACTCAATGTTT-AA-TGA-TAT-T-TTTA-CACC-----AT-T---TTTCATCAAAACT-GCG-TAT-GAGC----TATGTCTTAAACGAGC-CCATT-ATTATACAA-ACCTCAAT-AATTTAGA--------TATAGAATCTCTAAT-TTTGGT-GTAG-T--TGAG-A-TCAACCGACTA-CTCATTTTTTATAAATAG--ATCCGAATTTTTTGTC--ATTT-GAAATTT----AGATATCCTGTGTCC--AGA-CGGGG-ATTTGC-CCCGCC-TT-G-T-GCGCCCAGAGTCTtta
gi|2 : GGGCGC-A-CAA-----G---GTA----AGTACCAATCC----CCCG-CTT--G----C-TAATACCT-GGACTTTTA-AAAAGGA--ACGACAACTGAAAATTA----------------CAA--T-GTATTGGATGTACAGT-CACTTCACTAAAGTTCATATCCCT-GACCAAGAGCGCTGTGT-TTGATGACA-AAGTA-TTCGAGG--TA-ATATAC-T--GAGGTATTG-TTCA--TTC--ATCTTC--GTGAT---ATGAAAT---ATAATTTCTTA--TTCA-TTGAA--TGGA-GG----------------AATTGTAGA-T-------TTT--TGTCG-AC-ATC----A-A-C--T---ACAAAG-------G----------CA--ATGTCCCG-TA----CT-TCCAG---AA-AT-------GATAAGAAA-GC----T-TCTACTT---------------AATGA---TTTTTCTTCGAAC-CG--TCTGGTATA-TTCTGGATA----------------T-----------------TCAACAAGTTAGTCAC--------------A---TATATA-TT-G---AGGCA--------------TTTTT-CT------ACT-GCAAT-CACCG-TGC-------------ATA-A-C---TT--AC---------GTT---T---G-TT--TTGCCCTT-TT---AACT---GC--TTTTTG-CACAAA----GACA-CACA-A-TC-ACAC-AT--TGGGG-ACTGGCA-----TTCTTGT-TTATGGTTTAG-TATCTAGCCCTT-ATTTCGA--CTTGCA-TGCTACATCTGATGAATAAAAA---TTCTTACAAA--TCATTGA--CCGCCGGCTTATTTA-ATTGGAAAAAAAAAAA-TCTATGAATGTT-AT--TTATTG-TA-AA-TAAA-ATAAAATGGT-----GAAAGGATTTTT-GCATGATTCGCAACACATC-CTTCAGAC-A-TTACA--AC-CAA-AACA----A--CA-------TACACG-CTAA--C----------CAC-TTCG-CTACC--------TGATTTG-ATGAGTTATTCGAA-GGT-TTAAATTTGACTTG-AT--AAAGGAAA---GTA-AATGCCTA-AAGTTTT---TCTTTAAAAAAGT---GTGTTTTTT-ATATATA-ATGG-GTCCAG-TCATCCA--TTTTT---AAAACATGAAAATAGGATATACAGA--GTGTAC-ACTATCA--TTAAACCTT-TCTTT-AGAA-TG-GAGTTTTC-TT-GACCCACTCAT-AT-TCA--AAA--CTA--A----CAATG-TTTAA-TGGCTAT-TGTT-A--ACC----TATCT---TTTCATCAAAAC-TGCG-TATCGAGC----T------------------ATT-ATTAATCAA-ACCTCAATTAATTTAGA--------TAT-GAGAATCTTA-ATTTGGT-GTA-GT--TGAG-ATTCATCCGACT-ACGCA-TTTTCATAA-TAGAGAAACGAATTTT-TGTCATTTTTTGAAAATTTTAGAGATATCCTGTGTCTCCAGAGCGGAGGTATTGC-CCCGCCTTT-GTT-GCGCCAGGATTC
gi|4 : acagcGGCGCTA-CAA-----GCGGGCA----A------ATCC----CTCG-CTC-TGAGAACAGA-TATCT-AAAATTT--CAA------AACGACAA---AAAATT
gi|9 : cgcttgctatacctgacttttaaaaaggacgacaactgaaaattaacgaaagataaaacccaatttgttttgtacagtcagtcacaaagttatatcctgacaaagcgtgtgttgatgacaaagtagttcgaggtataatatatgaggtgtttgtcattcagatctccttctgatatgaaattacataatttttattttcacttgagtggagggatgtagatttttgtgacgaacagaccttacaagagcaccatgtcccagcacttcccgaatatgatagaaacgctctctaatgatttctttcgaaccgcttctgtatttgctgatattcaacagttgtacaacatcattttgtagctcttttctactgcaattccctgcttaactaattttgtttttgcccataactgctttttacacaaacacacatcacacgatatgggactggccattcgtttttggttctatttagccctatttttaccttgtacatgtacatctgatgaaaaattctacaaaattcattgacgcccgcttttattgaacaaaaattatgaatgttatttattgtaacataaaatttaaaaaggattctgcaggttcgacacactccgtcagatcagtacaacacaatcaaacatacacgctaaccacattcgcttaccgtgacttatatagtattgcggtaggtcttaaattgacttcaattaccgcaagcctaagtttttatttaaaaggtgtttttgtatataatgggtccagctccatatatagtatattcagaggttcactatcatttaaacttctctttagaaggtgagagacattggacccactcatattgcaaaactcaatgtttatggctattttagcactattttcacaaaagctgcgtagagttatgtttaacacaccattaattaatcaacacctcaataatgtaggattaagaatctaatttggtggtaagttgagaatcccgacatactcatttttcataatggaccgAA-----G---GTA----ATACCA-ATCC----CCCG-CTT--G----C-TA-TACCT-GGACTTTTA-AAAAGGA--ACGACAACTGAAA-TTAACGAAAAGAT--AACCCAAGTTTGTATGTGATACA--GT-CAGTC-ACTAAAGTT-ATATCC-T-GAC-AAGAGCG-TGTGT-TTGATGACA-AAGTA-TTCGAGG--TATATAT---TATGAGGTATTT-GTCA--TTC-AATCTTC--GTGAT---ATGAA-T---ATAATTT-TTA---TCACTTGAA--TGGA-GGA---------------A--TGTAG-AT-------TTT--TGT-G-AC-AAC----AGACC--T---GCAAAGA------G----------CA-CATGTCCCGCTA----CT-TCCCG---AA-AT-------GATA-GAAA-
gi|4 : CG-CTT--G----C-TA-TACCT-G-ACTTTTA-AAAAGGA---CGACAACTGAAAATTAACGAAA-GATAAAACCCAATTT-GT-TTTG-TACA--GT-CAGTC-AC-AAAGTT-ATATCC-T-GAC-AA-AGC-GTGTG--TTGATGACA-AAGTAGTTCGAGGTATA-ATATA--T--GAGGTGTTT-GTC--ATTCAGATCTCCTTCTGA---TATGAAATTACATAATTT-TTATTTTCACTTGAG--TGGAGGG----------------A--TGTAG-AT-------TTT--TGT-G-ACGAAC----AGA-CCTT---AC-AAGA------G----------CACCATGTCCCAGCA----CT-TCCCG---AATAT-------GATA-GAAACGC----T-C--TCT----------------AATGA---TTTC-TTTCGAAC-CGCTTCTG-TATT-TGCTG---A----------------TA----------------TT-------------C--------------A---A---CAGTT-GTACAA-CATCATTTTGTAGCTCTTTT--CT------ACT-GCAAT-TCCC--TGC-------------TT--AAC---TA--A------------T---TTT-GTTT--TTGCC--C-AT---AACT---GC--TTTTTA-CACAA--------A-CACACA-TC-ACACGATA-TGGG--ACTGGC-C--A-TTCGT-TTTTG-G--TTCT-ATT-TAGCCCTA-TTTTT--ACCTTGTA-CA-TGTACATC-TGATGAAAAA---TTCT-ACAAAATTCATTGAC-GC-CCGCTTT-T----ATT-G---AACAAAAA-T-TATGAATGTT-AT--TTATTG-------TAAC-ATAAAAT-----TTAAAAAGGA-TTCT-GCAGG-TTCG--ACACACTCCGTCAGATCAG-TACA--ACACAATCA-A----A--CA-------TACACG-CTAAC-CA---------CA--TTCG-CTTACCG------TGACTTATAT-AGTATTGCGGTAGGTCTTAAAT-TGACTTCAAT--TACCGCAA----------GCCT--AAGTTTT---TATT-TAAAAGGT---G---TTTTT-GTATATA-ATGG-GTCCA--GC-TCCAT------------ATAT---AGT-ATATT--CAGA-GGTTC---ACTATCA-TTTAAACT-TCTCTTT-AGAA-GGTGAGA-GACATTGGACCCACTCAT-AT-TGC--AA-----A--AC--TCAATG-TTTA--TGGCTAT-T-TT-AGCA-C----TA--T---TTTCA-CAAAAGCTGCG-TA--GAGT----TATGTTT--AACA--CACCATTAATTAATCAACACCTCAA-TAATGTAGG---------ATTAAGAATC-TA-ATTTGGTGGTAAGT--TGAGAA-TC--CCGACATACTCATTTTTCATAA-TGG---ACCGAATTTTTTGTC--GTTTTGAAATTTT---AGATATC---TGTTCTCAGAGCGAGGGATTTGC-C-CG-C-TT-G-TAGCGCC
gi|7 : AAGTT-GTATGTGATACA--GT-TAGTC-ACTAAAGTT-ATATCC-T-G--------------------AT-----AAG------AGAG--TA-ACAT---TC-GAGGTACAT-ACC---TTTCAATCTTC--GTGAT---ATCAAAT---ATAATTT-TTA--TTCATTTAAA--TGGA-GGA---------------A--TGTA-AAT-------TTT--TCT-A-AC-ATC----AGACC--T---ACAAAGGGTACATG----------TA-CATGTTCTGCTA----CT-TCCCA---AA-AC-------GATA-GAAA-GC----TCT--ACT----------------AATGA---CTTTTCTTTAGACACGC-TCTC-TATA-TTCTG---A----------------TCGCCTGCTATTGGTTTACT-------------C--------------ACCCT---TA-TT-C---TA-CA--------------GTTT--CT------CCT-GCAATGCCGCGTTGCTGGAGCAAAGTATTTA-AACGT-TT--GCTCAACTTACG-T---TTT-G-TT--TTGCC--CATT---AACT---GC--TTTTTA-CACAAA-----ACA-CA---A-TC-GTA--ATTCTTGGGAGCTGGCAT--TCTTGTTGTG----G--TTAA-TTC-TAGCCGTA-TTTTCGAA--TTGCA-TG-T--ACGTC-TGG-TGAAAAAGC-TCT-ACAAAATT-ATTGA--CCGTCACTTG-TATA-ATT-GAAAA
gi|6 : T-CTA--TTCACATGAAAATGGA-GGTGAGGCATTATTCCCCA--TGTAGAATATGCTGTTTTGGTGT-G-AC-AACCTTTAGA-C--TTCTACAAAGA------GTTTGGGCTTACA-CATGTCCCGCTACCTACTCTTCCTTTTAA-ATCTGGGAGGGTA-AAAA-GTAATAT-T--GCTCTATTTGGGGCAGGATAATGAGTTTTTTCTTTCGAAACCGC-TCTG-TATA-TTCTG---AGGGTTATTCTAACAGTT-----------------TTATCACA-------T--------------A---T---TA-TTAG---AG-CA--------------TTTT--TTCTATTAACTTGAAAT-ACC--GTGC-------------TTATAACATTTTGGACATA-----CGTTGTATTTAG-TTATCTGCC--T-TT---AACTTAAGCCATTTTTAACACAAAACACTATAGTACGAA-TCACAACGAT--TGGGGAACTGGCAT--TCT--GTGTTTTG-G--TTATATTC-TAGCCCTA-TTTTCGA--CTTGCAATG-TACA--TC-TGAT-GAAAAAAATTCTA-CAAAAT-CATTGACGCCGCCGC-TT-TATA-ATT-GAAAA---AAAA-T-TATGAATG-T-TTATTTATTG-TTAAA-TAAA-ATAAA------TTTAAAAAGGA-TTTT--CAGGATTCG--ACACA-CTCCCCAGATCAG-TACAACACAAAA-AA-G----A--CA-------TACACGC
gi|11 : GC-------------TCA-AA----TT--AC---------GTT---TT--G-TT--TTGCC--CATT---AACT---TC--TTTT-----CAAA-----ACA--AAACA-----TACGAC--TTGGACGCTTGCAT--TCTT-A-GTTTTG-G--T------T-TAG--CTAGTTCTCGTACCgtttttttttttttt
gi|5 : TTCTA-CAAAAG-CATTAAT-T-GTCGCCTT-T-TATATT-GAACAAGAAGA----T-TGAATG-TTATTTTTG--G-TT-AA-ATAA-TTAAAAT--TC---AAAAATGA-TTTT-GCAGGATTGG-A----ACCTCCTCA-AT---TCAAAACACACAA-AA-AGCATA--CAGATCTTTTTCATCTTTAACACAAAAACAATACACGCTCA-CCACTT-CGCTACCGGATTA-AT-A-TA-TTCAAA-AGTA--AATTC-GACTCCGATA-AAAAGGAA---GT--AATGTTTAAAAGTTTTTTCTTT----AAAAGTGCGG-GTTTTTT-GTTTAGA-ATGG-GTTCAGCTT-TCC--TTTTTA---AAAATATGAAAATAGGATATACAGA-GGgactatcagcatagtatat
gi|5 : aa-AGAT-GAAT--ACAGAAGGT--ACACTTATTATTT-AAACC-T-TTTTTCAGAA-TG-GAA---AC-TT-GGCCAACT----ATATTC--AA-----A--AC--TCAGTGTTTTAATGGGCTATCT-TT-A-CACC----TAT-T---TTCCATCAAAAC-TGCG-TAT-GAGCCATGT-TTTTT--AACA--C-CCATT--TTAATCAA-GCAT-AAGTAATTTAGATACATCTGTATACAGAATTCT-TATTTGGT-GTA-GT--TGAG-A-T---CCAACTAACTCA-TTTTCACAA-TAG--AACCGAATTTTTTGGC--ATTTTGAAA-TGTTA-AGGAATCCTGCGT-CTCAGAGATAGGGATTTGC---CGCC-TTGG-T-GCGCCCAACTTCTTcatttcgcaaggccaagtttccgattcgcgtttcggacaacacttggcttgcgaagatgaatacagaaggtacacttattatttaaaccttttttcagaatggaaacttggccaactatattcaaaactcagtgttttaatgggctatctttacacctattttccatcaaaactgcgtatgagccatgttttttaacacccattttaatcaagcataagtaatttagatacatctgtatacagaattcttatttggtgtagttgagatccaactaactcattttcacaatagaaccgaattttttggcattttgaaatgttaaggaatcctgcgtctcagagatagggatttgccgccttggtgcgcccaacttctt
gi|12 : aattctacaaaagcattaattgtcgccttttatattgaacaagaagattgaatgttatttttggttaaataattaaaattcaaaaatgattttgcaggattggaacctcctcaattcaaaacacacaaaaagcatacagatctttttcatctttaacacaaaaacaatacacgctcaccacttcgctaccggattaatatattcaaaagtaaattcgactccgataaaaaggaagtaatgtttaaaagttttttctttaaaagtgcgggttttttgtttagaatgggttcagctttcctttttaaaaatatgaaaataggatatacagaggcatttcgcaaggccaagtttccgattcgcgtttcggacaacacttggcttgcga-TTTTC-AGAA-TC-GAG---AC-TT-GACCCATTCAT-A--TTCAAAAC--TCAGTA---TTGAT-CTTTA--TGGC-AT-T-TT-A-CACCCAAATAT-TAAGTCTCATTGGAACATG
gi|17 : TTC-AGAA-TG-GAG---AC-TT-GACCCATTCAT-AT-TTA--AAcatggacgtgt
gi|16 : t---TCAATGTTTGA--TGGGTAT-T-TT-A-CACC----TAA-T---TTTCATCGAAAC---TGCTGT-G
gi|2 : cTTTTTA-AAAGTCCAGGTATTAGCA-AGCGGGGGATTGGTACTTACC-TT-G-T-GCGCCC
gi|15 : acagcATCCTGTGTC-TCAGAGCGGGGGATTTGC-CCTGCA-TT-G-T-GCGCCCAGATTCTTggaacgacaactgaaaattacaatgtattggatgtacagtcacttcactaaagttcatatccctgaccaagagcgctgtgtttgatgacaaagtattcgaggtaatatactgaggtattgttcattcatcttcgtgatatgaaatataatttcttattcattgaatggaggaattgtagatttttgtcgacatcaactacaaaggcaatgtcccgtacttccagaaatgataagaaagcttctacttaatgatttttcttcgaaccgtctggtatattctggatattcaacaagttagtcacatatatattgaggcatttttctactgcaatcaccgtgcataacttacgtttgttttgcccttttaactgctttttgcacaaagacacacaatcacacattggggactggcattcttgtttatggtttagtatctagcccttatttcgacttgcatgctacatctgatgaataaaaattcttacaaatcattgaccgccggcttatttaattggaaaaaaaaaaatctatgaatgttatttattgtaaataaaataaaatggtgaaaggatttttgcatgattcgcaacacatccttcagacattacaaccaaaacaacatacacgctaaccacttcgctacctgatttgatgagttattcgaaggtttaaatttgacttgataaaggaaagtaaatgcctaaagtttttctttaaaaaagtgtgttttttatatataatgggtccagtcatccatttttaaaacatgaaaataggatatacagagtgtacactatcattaaacctttctttagaatggagttttcttgacccactcatattcaaaactaacaatgtttaatggctattgttaacctatcttttcatcaaaactgcgtatcgagctattattaatcaaacctcaattaatttagatatgagaatcttaatttggtgtagttgagattcatccgactacgcattttcataatagagaaacgaatttttgtcattttttgaaaattttagagatatcctgtgtctccagagcggaggtattgccccgcctttgttgcgccaggattc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): AGCCAAGTGTCCGATTCGCTTAGCTTGTCGAAGTCGACATTGGCTTGCGAAGATGCCAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 4444444444 111 2222 11 11111 1 22 222 1111 2222 3333333333333333 2222222222 1111 2222222222 111111 111111 1111111 22222222 33333333333 111 55555555555555555555555555555555555555555555555555555555555555555555555 1 11111 222 66666666666666666666666666666666666666 111 11 1 111 111 11 22222222222 11 111 2222 11111111 11 33 1 11 111 11 1111 1111 11 111 6666666666666666666666666 1111 1111 11 22 3333333 11 1 1 111 11 1 11 111 1 11111 111 1111 2222222222 1 11 111 555555555555555 1 1111 111 1 1 33333333333 22222222 111 11111 333 111 22222 1111
lowQualScore : 1 6 0000 7777777777 000 5 66 5 5 5 9999 00 1 0 88888 3 5 55 5 5 5 5 5 5 5 5 5 5 55 55 0 66 11 5 55 5 888 5 0000 66 5555 888 5 66 0 66 3333333333333333 5 5555555555 66 5 5 5 0000 66 5 5 1111111111 5 444444 444444 66 5 6666666 5 5 00000000 5 88888888888 555 5 5 5 5 5 5 5 44444444444444444444444444444444444444444444444444444444444444444444444 777 6 9 3 66666 6 222 55555555555555555555555555555555555555 1 000 44 5 77 1 777 000 77 777 33 11111111111 5 0 33 666 5 000 1 3333 5 11111111 2 88 99 6 6 88 6 4 99 5 55 99 333 22 5 77 5 00 1 888 3 1111 6 6 3 4444 6 44 000 6666666666666666666666666 1111 4444 6 6 99 6 66 5 00 8 8 0 3333333 0 88 8 8 8 8 8 66 0 3 8 0 8 444 88 11 3 0 11 444 8 8 8 5 8 8 0 8 33333 222 5555 3 7 6 6 1111111111 0 0 3 8 6 5 33 5 5 000 5 5 5 0 3 444444444444444 9 5 66 5 5 5 5 2222 77 000 1 1 6 88 0 00000000000 88 8 66 0 99999999 6 3 222 8 55555 8 8 444 66 0 0 8 111 8 0 44444 3 6 5555 333 6 6 6 6 6
lowQualScore : . . .... .......... ... . .. . . . .... .. . . ..... . . .. . . . . . . . . . . .. .. . .. .. . .. . ... . .... .. .... ... . .. . .. ................ . .......... .. . . . .... .. . . .......... . ...... ...... .. . ....... . . ........ . ........... ... . . . . . . . ....................................................................... ... . . . ..... . ... ...................................... . ... .. . .. . ... ... .. ... .. ........... . . .. ... . ... . .... . ........ . .. .. . . .. . . .. . .. .. ... .. . .. . .. . ... . .... . . . .... . .. ... ......................... .... .... . . .. . .. . .. . . . ....... . .. . . . . . .. . . . . . ... .. .. . . .. ... . . . . . . . . ..... ... .... . . . . .......... . . . . . . .. . . ... . . . . . ............... . . .. . . . . .... .. ... . . . .. . ........... .. . .. . ........ . . ... . ..... . . ... .. . . . ... . . ..... . . .... ... . . . . .
lowQualScore : 0 7 7777 6666666666 000 0 99 0 0 0 8888 00 4 7 00000 1 0 66 0 0 0 0 0 0 0 0 0 0 11 11 0 99 99 0 11 0 888 0 4444 99 6666 888 0 99 2 99 4444444444444444 0 9999999999 99 0 0 0 6666 99 0 0 9999999999 0 444444 444444 99 0 2222222 0 0 77777777 7 66666666666 777 7 7 7 7 7 7 7 00000000000000000000000000000000000000000000000000000000000000000000000 555 7 8 3 77777 7 777 77777777777777777777777777777777777777 4 000 11 7 99 4 999 000 99 333 66 99999999999 7 7 66 777 7 000 4 6666 7 22222222 5 00 22 7 7 33 7 0 22 7 99 99 000 44 7 44 7 77 3 333 2 8888 7 7 2 0000 7 00 333 7777777777777777777777777 8888 2222 7 7 22 7 77 6 66 0 0 8 2222222 8 88 0 0 0 0 0 88 8 2 2 8 0 000 88 88 2 6 00 000 0 0 0 4 0 0 8 0 22222 000 0000 2 3 7 7 5555555555 8 6 8 0 7 7 66 7 7 000 7 7 7 1 6 333333333333333 0 7 44 7 7 7 7 1111 44 000 4 4 7 88 6 22222222222 88 0 44 8 00000000 0 8 222 0 22222 0 0 666 88 8 8 0 888 0 8 88888 8 0 0000 777 7 7 7 7 7
consensus : AGAAACAGGGCGCA-CAA--G-GTAA----CA----TC---CCCCGCTT-GC--TA-TACCT-GGACTTTTA-AAAAGGA-AACGACAACTGAAAATTAACG-AAAGAT--AACCCAAG-TTGTATGTGATACA-GT-CAGT-CACTAAAGTT-ATATCC-T-GAC-AAGAG-C-G-TGTGT-TTGATGACA-AAGTA-TTCGAGG--TA--ATA-TA-TGAGGTATTT-GTCA--T-TC-A-ATCTTC--GTGAT--TATGAAAT---ATAATTT-TTA--TTCACTTGAA--TGGAGG---------A------AT-GTAGAAT-------TTT--TGT-G-AC-AAC----AGAC--C-TA-CAAAGAG----------CA-CATGT------CCCGCTAC------TTCCCG--AA-AT-------GATA-GAAA-G--------CT-CTACT-----------AATGA---TTTTCTTTCG-AA-C-CGC-TCTG-TATA-TTCTG-A----------------TATTC-----------------A-C--------------T-TA------------TT-G-AG-CATTTTT-CTACT-----GCAAT-CCCCGGTGC-------------TTA-AAC---TT--AC--------CGTT---TTT-G-TT--TTGCCC-TT---AACT---GC--TTTTTA-CACAAA--ACAC------A-CACATCACA-CGAT--TGGGGAACTGG-CATT---CTT-GTGTTTTG-GTT--AT-NTCTAGCCCTATTTTCGAA-CTTG--C-ATG-TACA--TC-TGA-TGAA--AA-AATTCTAACAAAATTCATTGAC-CCGCCGCCTT-T-ATA-ATTG-AAAAAAAAAAA-T-TATGAATGTTATTTTTATTG-TT-AA-TAAA-ATAAAATT--TTAAAAAGGATTTT-GCAGGATTCG-AACACACCTCCT-------------------------CAGATCAGTTACAAC----ACACAAAA-AA--CA-TACACGCCTAACCACACTTCG-C-TACCC-CG--TGATTTA-AT-AG-TA-TT-CGA-AGGT-TTAAATTTGACTTCGAT-AAAA-GGAA---GTA-AA-TGCCTAAAG--TTTT---TCTT-T-AAAAA-GTGTGTTTTTT-GTATA-TAATGG-GTCCAG-TC-TCCATTTTTTT---AAAACATGAAAATAGGATATACAGA-G-G---TTCACAACTATCATTTTAAACC-T-TCTTT-AGAA--TG-GA-G---AC-TT-GACCCACTCAT-ATTTCAA---T---CA--A---TCAATGTTTTAA-TGG-CTAT-T-TT-A-CACC----TAT-T---TTTCATCGAAAC-TGCG-TAT-GAGCTATGTTTT--AACA--C-CCATT-ATTAATCAA-ACCTCAATTAATTTAGATA--------TAGAGAATCTTATATTTGGT-GTAGGT--TGAG-A-TC-A-CCGACTAACTCATTTTTCATAA-T--AG-AACCGAATTTTTTGTC--A--TTTTGAAATTTTTA-AGATATCCTGTGTCCTCAGAGCGGGGGATTTGCCCCGCC-TT-G-T-GCGCCCAGATTCTT
Reference ( family-2345 ) : AGAAACAGGGCGCA-CAA--G-GTAA----CA----TC---CCCCGCTT-GC--TA-TACCT-GGACTTTTA-AAAAGGA-AACGACAACTGAAAATTAACG-AAAGAT--AACCCAAG-TTGTATGTGATACA-GT-CAGT-CACTAAAGTT-ATATCC-T-GAC-AAGAG-C-G-TGTGT-TTGATGACA-AAGTA-TTCGAGG--TA--ATA-TA-TGAGGTATTT-GTC---T-TC-A-ATCTTC--GTGAT--TATGAAAT---ATAATTT-TTA--TTCACTTGAA--TGGAGG---------A------AT-GTAGAAT-------TTT--TGT-G-AC-AAC----AGAC--C-TA-CAAAGAG----------CA-CATGT------CCCGCTAC------TTCCCG--AA-AT-------GATA-GAAA-G--------CT-CTACT-----------AATGA---TTTTCTTTCG-AA-C-CGC-TCTG-TATA-TTCTG-A----------------TATTC-----------------A----------------T-TA------------TT-G-AG-CATTTTT-CTACT-----GCAAT-CCCCGGTGC-------------TTA-AAC---TT--AC--------CGTT---TTT-G-TT--TTGCCC-TT---AACT---GC--TTTTTA-CACAAA--ACAC------A-CACATCACA-CGAT--TGGGGAACTGG-CATT---CTT-NTGTTTTG-GTT--AT-TTTTAGCCCTATTTTCGAA-CTTG--C-ATG-TACAC-TC-TGANTGAA--AA-AATTCTAACAAAATTCATTGAC-CCGCCGCCTT-T-ATA-ATTG-AAAAAAAAAAA-T-TATGAATGTTATTTTTATTG-TT-AA-TAAA-ATAAAATT--TTAAAAAGGATTTT-GCAGGATTCG-AACACACCTCCT-------------------------CAGATCAGTTACAAC----ACACAAAA-AA--CA-TACACGCCTAACCACACTTCG-C-TACCCGCG--TGATTTA-AT-AG-TA-TT-CGA-AGGT-TTAAATTTGACTTCGATGAAAA-GGAA---GTA-AA-TGCCTAAAG--TTTT---TCTT-T-AAAAA-GTGTGTTTTTT-GTATA-TAATGG-GTCCAG-TC-TCCATTTTTTT---AAAACATGAAAATAGGATATACAGA-G-G---TTCACAACTATCATTTTAAACC-T-TCTTT-AGAA--TG-GA-G---AC-TT-GACCCACTCAT-ATTTCAA---T---CA--A---TCAATGTTTTAA-TGG-CTAT-T-TT-A-CACC----TAT-T---TTTCATCGAAAC-TGCG-TAT-GAGCTATGTTT---AACG--C-CCATT-ATTAATCAA-ACCTCAATTAATTTAGATA--------TAGAGAATCTTATATTTGGT-GTAGGT--TGAG-A-TC-A-CCGACTAACTCATTTTTCATAA-T--AG-AACCGAATTTTTTGTC--G--TTTTGAAATTTTTA-AGATATCCTGTGTCCTCAGAGCGGGGGATTTGCCCCGCC-TT-G-T-GCGCCCAGATTCTT
gi|1 : AGAAACAGGGCGCA-CAA--G-GTAA-----A----TC---CCCCGCTTTGC--TA-TACCT-GGACTTTTACAAAAGGAGAACGACAACTGAAAATTAACG-AAAGAT--AACCCAAG-TTGTATGTGATACACGT-CAGT--ACTAAAGTT-ATATCC-T-GAC-AAGAG-CGG-TGTGT-TTGATGACA-AAGTA-TTCAAAG--TA--ATA-T--TGAGGTATTT-GTCAAAT-TCTA-ATCTTC--GTGAT--TATGAAAT---ATAATTT-TTA--TTCACTTGAA--TGGAGG----------------AT-GTAGAAT-------TTT--TGT-G-AC-AAC----AGA---C-TA-CAAAGAG----------CA-CATGT------CCCGCTAC------TTTCCG--AA-AT-------GATA-GAAA-G--------CT--TACT-----------AATGA---TTTCTTTTCG-AA-CTCGC-TCTG-TATA-TTCTG-A----------------T-TTC-----------------A----------------T-TA------------TT-G-AG-CA-TTTT-CTACT-----GCAAT-CCCCGATGC-------------TTA-AAC---TT--AC--------CGTT---TTT-G-TT--TTGCCT-TT---AACT---GC--TTTTTA-CACAAACTACAC------A-CACATCCTA-CGAT--TGGGGAACTCG-CATA---CTTCATGTGTTGCGTT--AT-TGTTAGCCCTATTTTCGAACCTTG--C-ATG-TACACATCATGATTGAA--AACACTTCTAACAAAATTCATTGAC-CCGCCGCCTT-T-ATA-ATTG-AAAAAAAAAAA-T-TATGAATG-TATTCTTATTG-TT-AA-TAAA-ATAAAATTTCTTAAAAAGGATTTT-GCAGGATTCG-AACACACCTCCT-------------------------CAGAT-AGTTACAAG----ACACAAAA-AA--CAGTACATGCCTAACC-CACTTCG-C-TACCCGCGCTTGATTTA-AT-AG-TACTT-CGG-CGGTATTAATTCTGACTTC-AT-AAAA-GGAA---GTAGAG-TGCCT-AAG--TTTTCTCTCTTCT-AAAAA-GTG-GTTTTTT-GTATA-T-ATGGAGTCCA--TC-TCCATTTTTTT---GAAACATG-AAAT-GGATTAACAGA-G-G---TTTACAACTATCATTTTAAACC-T-TCTTT-AGAA--TG-GAGG---AC-TT-GACCCACTCATCATTTCAAC--T---CA--A---TCAATGTTTTAACTGG-CTAT-T-TT-A-CACC----TAT-T---TTTCATCAAAACTTGTGCTGT-GAGCT-TGTTT---AACA--C-CCATT-ATTAATCAA-ACCTCAATTAATTTAGATA--------TAGAAAATCTTATATTTGGT-GTAGGTCATGAG-A-TCAA-CCGACTAACTCATTTTTCATAA-T--AGTAACCGATTTTTGTGTCTTA--TTTCGAAATTTTTA-AGATACCCTGTGTCCTCAGAGCGGGGGATTTGCCTCGCC-TT-G-T-GCGCCCAGATTCTT
gi|10 : AGAAACAGGG---A-CAACCGTATAC----CA----AT---CCCCGCTT-ACACTA-AACCT-GGACTTTTA-AAAAGG--ACCGA-AACTGAAAATGAAC------AT--GA-CCAAG-TTGTATGT--TA-A-GTCCAGT-CACT-AAGTT-ATAT-C-T-G-C--AGAG-C-G-TGTGTCTTGACGAC--AAGTA-TTCGAGG-------TA-CA-TGAGGTACTT-GT----T-TC---ATCTTT---TGCTGGTATTAAAT---ATGATT
gi|11 : aaaGC-------------TCA-AA----TT--AC---------GTT---TT--G-TT--TTGCCCATT---AACT---TC--TTTT-----CAAA--ACA-------A-AACAT---A-CGAC--TTGGACGCTTG-CATT---CTT-A-GTTTTG-GTT--
gi|12 : -TTTTC-AGAA--TC-GA-G---AC-TT-GACCCATTCAT-A-TTCAAAACT---CAGTA---TTGATCTTT--A-TGG-C-AT-T-TT-A-CACCCAAATAT-TAAGTCTCATTGGAACATGCA-Ttagctagttctcgtaccgactatcagcatagtatat
gi|13 : AGAATCAGAGTGCA-CAA--G-GTAA----TG----CCAAACCCCGCCT-AC-----TACCT-GGACTTTTA-AAAAGG--AACGACAACTGAAAATTAACggacgtgt
gi|15 : aATCCTGTGTC-TCAGAGCGGGGGATTTGCCCTGCA-TT-G-T-GCGCCCAGATTCTT
gi|16 : ---TCAATGTTT-GA-TGG-GTAT-T-TT-A-CACC----TAA-T---TTTCATCGAAAC-TGCta
gi|17 : cTTC-AGAA--TG-GA-G---AC-TT-GACCCATTCAT-ATTTAAA---tgtg
gi|2 : tGGGCGCA-CAA--G-GTAAGTACCAA---TC---CCCCGCTT-GC--TAATACCT-GGACTTTTA-AAAAGGA-A-CGACAACTGAAAATTA-C---AATGT--A--------TTGGATGT---ACA-GT-CACTTCACTAAAGTTCATATCCCT-GACCAAGAG-C-GCTGTGT-TTGATGACA-AAGTA-TTCGAGG--TA--ATA-TACTGAGGTATTG-TTCA--T-TC-A--TCTTC--GTGAT---ATGAAAT---ATAATTTCTTA--TTCA-TTGAA--TGGAGG---------A------ATTGTAGA-T-------TTT--TGTCG-AC-ATC----AA----C-TA-CAAAG-G----------CA--ATGT------CCCG-TAC------TTCCAG--AA-AT-------GATAAGAAA-G--------CTTCTACTT----------AATGA---TTTTTCTTCG-AA-C-CG--TCTGGTATA-TTCTGGA----------------TATTC-----------------AACAAGTTAGTCACATATATA------------TT-G-AGGCATTTTT-CTACT-----GCAAT-CACCG-TGC-------------ATA-A-C---TT--AC---------GTT---T---G-TT--TTGCCC-TTTT-AACT---GC--TTTTTG-CACAAAG-ACAC------A-CA-ATCACA-C-AT--TGGGGA-CTGG-CATT---CTT-GT-TTATG-GTTTAGT-ATCTAGCCCTTATTTCGA--CTTG--C-ATGCTACA--TC-TGA-TGAATAAA-AATTCTTACAAA--TCATTGAC-C-GCCGGCTTAT-TTA-ATTGGAAAAAAAAAAA-TCTATGAATGTTATTT--ATTG-TA-AA-TAAA-ATAAAATG--GTGAAAGGATTTTT-GCATGATTCGCAACACATC-CTT-------------------------CAGA-CA-TTACAAC-------CAAAACAA--CA-TACACG-CTAAC--CACTTCG-C-TACC------TGATTTG-ATGAGTTA-TT-CGA-AGGT-TTAAATTTGACTT-GAT-AAAG-GAAA---GTA-AA-TGCCTAAAG--TTTT---TCTT-TAAAAAA-GTGTGTTTTTT-ATATA-TAATGG-GTCCAG-TCATCCA--TTTTT---AAAACATGAAAATAGGATATACAGA-GTG---T--AC-ACTATCA--TTAAACCTT-TCTTT-AGAA--TG-GA-GTTTTC-TT-GACCCACTCAT-ATTCAAA---A---CT--A---ACAATG-TTTAA-TGG-CTAT-TGTT-A--ACC----TATCT---TTTCATCAAAAC-TGCG-TATCGAGCT-------------------ATT-ATTAATCAA-ACCTCAATTAATTTAGATA--------T-GAGAATCTTA-ATTTGGT-GTA-GT--TGAG-ATTC-ATCCGACT-ACGCA-TTTTCATAA-TAGAG-AAACGAA-TTTTTGTC--ATTTTTTGAAAATTTTAGAGATATCCTGTGTCTCCAGAGCGGAGGTATTGCCCCGCCTTT-GTT-GCGCCAGGATTC
gi|3 : acagcGAAACAGG-CGCAGCAA--G-GTAATCACCA----TC---CCCCGGCT-GC--TA-TACCTTGGACTTTCA-AAAAGGA-A-CGACAACTGAAAATTAACG-A-----------------TGTATGTGATACA-GT-CAGT-CACTAA-GTT-AT--CC-T-GAC-AAGAGGC-G-TGT-T-TTGATGACATACGTAATTCGAG---TAT-ATA-TA-TGAGGTATTT-GTC---GATC-A--TCT-C--GTGAT---ATGAAAT---A-AATTT-TT---TTC-TTTGAA--TGGAGG---------A------AT-GTAG----------TTT--TGT-GGAC-AAC----AGAC--C-TAACAAAGAG----------CA-CATAT------CCCGCTAC------T-CCCG--AA-AT-------GATA-GAAA-G--------CT-CTACT-----------AATGA---TTTTCTGTCGGAA-C-CGC-TCTA-TTTAATTCTG-A----------------TATTCCAACATTTACACAT---A----------------T-TA------------TT-G-AG-CATTTTTTCTACT-----GCAAT-CTC--GTGC-------------TTA-A-----CT--AA--------CGTT---TT--G-TT--T-GCCC-TTGTAAACT---GC--TTTT-A-CACAAA--ACAC------AACA-ATCACA-CGAT--TGGG-AACTGG-CATTGACCTT-GT---TTG-GTT--AT-CT--AGCC-TATTTTCGA--CTT---C-ATG-TACA--TC-TGAATGAA--AA-AATTCTAGCAAAAT-CATTGAC-C-GCCGC-TT-T-ATATATTG-AAAAAAAAAAAAT-TATGGATGT-ATTGT-ATTGGTT-AAATAAACATAAAATT--T-AAAAAGGATTTTTGC-GGAT-CG-AACACACT--CT-------------------------CAGAT-AGT-ACAAC----ATAAAAAA-AAAACA-TACACGC-TAACCAC--TTGGGC-T--CCACA--TAATTTT--T-AG-TA-TT-CGA-AGGT-TTAAATTTGACTTC-ATGAAAAAGGAAACAGTA-AAATGC--AAAG--TTTT---TCTT-T-AAAAA-GTGTGTTTTTTTGTATACTAATGG--TCCAA-TC-TC-ATTCTTTTTAAAAAACATGAAA-TAGGATATACAGA-G-G---TT-ACA-CTA-CATTTCAACCT-T-TCTTT-AAAAC-TG-GA-G---AC-TT-GACCAAATCA--ACTTCAA---TATTCA--AAACTCAATGTTT-AA-TGA--TAT-T-TTTA-CACC-----AT-T---TTTCATCAAAAC-TGCG-TAT-GAGCTATGTCTTA-AACGAGC-CCATT-ATTATACAA-ACCTCAAT-AATTTAGATA--------TAGAATCTCTAAT-TTTGGT-GTAG-T--TGAG-A-TC-AACCGACTA-CTCATTTTTTATAAAT--AG-ATCCGAATTTTTTGTC--A--TTT-GAAATTT----AGATATCCTGTGTCC--AGA-CGGGG-ATTTGCCCCGCC-TT-G-T-GCGCCCAGAGTCT
gi|4 : CGCTT-GC--TA-TACCT-G-ACTTTTA-AAAAGGA---CGACAACTGAAAATTAACG-AAAGATAAAACCCAAT-TTGT-TTTG-TACA-GT-CAGT-CAC-AAAGTT-ATATCC-T-GAC-AA-AG-C-G-TGTG--TTGATGACA-AAGTAGTTCGAGGTATA--ATA-TA-TGAGGTGTTT-GTCA--T-TC-AGATCTCCTTCTGA---TATGAAATTACATAATTT-TTATTTTCACTTGAG--TGGAGG---------G------AT-GTAG-AT-------TTT--TGT-G-ACGAAC----AGAC--CTTA-C-AAGAG----------CACCATGT------CCCAGCAC------TTCCCG--AATAT-------GATA-GAAACG--------CT-CT-CT-----------AATGA----TTTCTTTCG-AA-C-CGCTTCTG-TATT-TGCTG-A----------------TATTC-----------------AACAG------------T-TGTACAACATCATTTT-GTAG-CTCTTTT-CTACT-----GCAAT-TCCC--TGC-------------TT--AAC---TA--A------------T---TTT-GTTT--TTGCCC-AT---AACT---GC--TTTTTA-CACAA-----AC------A-CACATCACA-CGATA-TGGG--ACTGGCCATT---CGT----TTTTG-GTT--CT-ATTTAGCCCTATTTTT-AC-CTTGTAC-ATG-TACA--TC-TGA-TG-A--AA-AATTCT-ACAAAATTCATTGAC-GC-CCGCTTT-T-----ATTG----AACAAAAA-T-TATGAATGTTA--TTTATTG-------TAAC-ATAAAA-T--TTAAAAAGGATTCT-GCAGG-TTCG--ACACACTCCGT-------------------------CAGATCAG-TACAAC----ACA-ATCA-AA--CA-TACACG-CTAACCACA-TTCG-CTTAC---CG--TGACTTATAT-AG-TA-TTGCGGTAGGTCTTAAA-TTGACTTCAATTA------CC---GCA-A---GCCT-AAG--TTTT---TATT-T-AAAAG-GTG---TTTTT-GTATA-TAATGG-GTCCAG--C-TCCAT--------------AT----ATAGTATATTCAGA-G-G---TTC---ACTATCA-TTTAAACT-TCTCTTT-AGAAGGTGAGA-G---ACATTGGACCCACTCAT-ATTGCAA--------A--AC--TCAATGTTT--A-TGG-CTAT-T-TT-AGCA-C----TA--T---TTTCACAAAAGC-TGCG-TA--GAGTTATGTTT---AACA--CACCATTAATTAATCAACACCTCAA-TAATGTAGG-A--------TTAAGAATC-TA-ATTTGGTGGTAAGT--TGAGAA-TC---CCGACATACTCATTTTTCATAA-T---G-GACCGAATTTTTTGTC--G--TTTTGAAATTTT---AGATATC---TGTTCTCAGAGCGAGGGATTTG-CCCG-C-TT-G-TAGCGCC
gi|5 : -AATTCTA-CAAAAG-CATTAAT-T-GTCGCCTT-TTATA--TTG-AACAAGAAGA----T-TGAATGTTATTTTTG--G-TT-AA-ATAA-TTAAAATT--C-AAAAATGATTTT-GCAGGATTGG-AAC----CTCCTCAATTCAAAACACACAAAAAGCATACAGATCTTTTTCATCTTTAACACAAAA-AC--AA-TACACGC-TCACCAC--TTCG-C-TACC---G---GATT-A-AT-A--TA-TT-CAA-AAGT---AAATTCGACTCCGATAAAAA-GGAA---GT--AA-TGTTTAAAAGTTTTT---TCTT-T-AAAAGTGCGGGTTTTTT-GTTTA-GAATGG-GTTCAGCTT-TCC--TTTTTA---AAAATATGAAAATAGGATATACAGA-G-GCATTTCGCAA
gi|5 : GAAGAT--GA-ATACAGAAG-G---T--ACACTTATTATTT-AAACC-T-TTTTTCAGAA--TG-GA-A---AC-TT-GGCCAACT-AT-ATT-CAA--------A--AC--TCAGTGTTTTAA-TGGGCTATCT-TT-A-CACC----TAT-T---TTCCATCAAAAC-TGCG-TAT-GAGCCATGTTTTTTAACA--C-CCATT--TTAATCAA-GCAT-AAGTAATTTAGATACATCTGTATACAGAATTCT-TATTTGGT-GTAG-T--TGAG-A-TC----CAACTAACTCATTTT-CACAA-T--AG-AACCGAATTTTTTGGC--A--TTTTGAAA-TGTTA-AGGAATCCTGCGT-CTCAGAGATAGGGATTTG--CCGCC-TTGG-T-GCGCCCAACTTCTTggccaagtttccgattcgcgtttcggacaacacttggcttgcgaagatgaatacagaaggtacacttattatttaaaccttttttcagaatggaaacttggccaactatattcaaaactcagtgttttaatgggctatctttacacctattttccatcaaaactgcgtatgagccatgttttttaacacccattttaatcaagcataagtaatttagatacatctgtatacagaattcttatttggtgtagttgagatccaactaactcattttcacaatagaaccgaattttttggcattttgaaatgttaaggaatcctgcgtctcagagatagggatttgccgccttggtgcgcccaacttctt
gi|6 : aattctacaaaagcattaattgtcgccttttatattgaacaagaagattgaatgttatttttggttaaataattaaaattcaaaaatgattttgcaggattggaacctcctcaattcaaaacacacaaaaagcatacagatctttttcatctttaacacaaaaacaatacacgctcaccacttcgctaccggattaatatattcaaaagtaaattcgactccgataaaaaggaagtaatgtttaaaagttttttctttaaaagtgcgggttttttgtttagaatgggttcagctttcctttttaaaaatatgaaaataggatatacagaggcatttcgcaaggccaagtttccgattcgcgtttcggacaacacttggcttgcT-CTA--TTCACATGAAAATGGAGGTGAGGCATTATTCCCCAT-GTAGAATATGCTGTTTTGGTGT-G-AC-AACCTTTAGACTTC-TA-CAAAGAGTTTGGGCTTACA-CATGT------CCCGCTACCTACTCTTCCTTTTAA-ATCTGGGAGGGTA-AAAA-GTAATATTGCT-CTATTTGGGGCAGGATAATGAGTTTTTTCTTTCG-AAAC-CGC-TCTG-TATA-TTCTG-AGGGT------------TATTCTAACAGTTTTATCACATA----------------T-TA------------TTAG-AG-CATTTTTTCTATTAACTTGAAAT-ACC--GTGC-------------TTATAACATTTTGGACATA-----CGTTGTATTTAG-TTATCTGCCT-TT---AACTTAAGCCATTTTTAACACAAA--ACACTATAGTA-CGAATCACAACGAT--TGGGGAACTGG-CATT---C-T-GTGTTTTG-GTT--ATATTCTAGCCCTATTTTCG-A-CTTG--CAATG-TACA--TC-TGATGAAA--AA-AATTCT-ACAAAA-TCATTGACGCCGCCG-CTT-T-ATA-ATTG----AAAAAAAA-T-TATGAATGTT-TATTTATTG-TTAAA-TAAA-ATAAA--T--TTAAAAAGGATTTT--CAGGATTCG--ACACA-CTCCC-------------------------CAGATCAG-TACAAC----ACAAAAAA-GA--CA-TACACGC
gi|7 : AAG-TTGTATGTGATACA-GT-TAGT-CACTAAAGTT-ATATCC-T-GAT-AAGAG-A-G-T----------------AACA-TTCGAGG--TAC-ATA-CC-T----------------T-TC-A-ATCTTC--GTGAT---ATCAAAT---ATAATTT-TTA--TTCATTTAAA--TGGAGG---------A------AT-GTA-AAT-------TTT--TCT-A-AC-ATC----AGAC--C-TA-CAAAGGG----------TA-CATGTACATGTTCTGCTAC------TTCCCA--AA-AC-------GATA-GAAA-G--------CT-CTACT-----------AATGAC--TTTTCTTTAG-AC-A-CGC-TCTC-TATA-TTCTG-ATCGCCTGCTATTGGTTTACTC-----------------ACCC-------------T-TA------------TT-C-TA-CA-GTTT-CTCCT-----GCAATGCCGCGTTGCTGGAGCAAAGTATTTA-AACGT-TT--GCTCAACTTACG-T---TTT-G-TT--TTGCCCATT---AACT---GC--TTTTTA-CACAAA--ACAC------A----ATCGTA---ATTCTTGGGAGCTGG-CATT---CT---TGTTGTG-GTT--AA-TTCTAGCCGTATTTTCGAA--TTG--C-ATG-TACG--TC-TG-GTGAA--AA-AGCTCT-ACAAAATT-ATTGA--CCGTCACTTG-T-ATA-ATTG-AAAAgtttttttttttttt
gi|8 : AGAAACAGGGCGCA-CAA-----CAA----------TC---CCCCGCTT-AC--TA-TACCT-GGACT-----------------ACAACTGAAAATTAACG-AAAGATTAAACCC-AG-TTGTATGTGATACA-GT-CAGT-CACTAAAGTT-ATATCC-TAGAC-AAGAG-C-G-TGTGT-TTGATGACA-AAGTA-TTCGAGG--TAATATA-TA-TGAGGTATTTGGTCA--T-TC-A-ATCTTC--GTGA---TATGAAAT---ATAATTT-TTA--TTCACTTGAA--TGGAGG---------A------AT-GTAG-AT-------TTT--TGT-G-AC-AAC----AGAC--C-TG-CAAAGAG----------CA-CATGT------CCCGCTAC------TTCCCG--AA-AT-------GATA-GAAA-G--------CT-CTACTA----------AATGA---TTTTCTTTCG-AA-C-CGC-TCTG-TATA-TTCTG-A----------------TATTC-----------------A----------------
gi|9 : aAA--G-GTAA----TACCAATC---CCCCGCTT-GC--TA-TACCT-GGACTTTTA-AAAAGG--AACGACAACTG-AAATTAACGAAAAGAT--AACCCAAGTTTGTATGTGATACA-GT-CAGT-CACTAAAGTT-ATATCC-T-GAC-AAGAG-C-G-TGTGT-TTGATGACA-AAGTA-TTCGAGG--TAT-ATATTA-TGAGGTATTT-GTCA--T-TC-A-ATCTTC--GTGA---TATG-AAT---ATAATTT-TTA---TCACTTGAA--TGGAGG---------A------AT-GTAG-AT-------TTT--TGT-G-AC-AAC----AGAC--C-TG-CAAAGAG----------CA-CATGT------CCCGCTAC------TTCCCG--AA-AT-------GATA-GAAA-acagttatcacatattatttg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AGCCAAGTGTCCGATTCGCTTAGCTTGTCGAAGTCGACATTGGCTTGCGAAGATGCCAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 1111 4444444444 111 2222 11 1111111 1 1 222 1111 2222 2222222222222222 2222222222 1111 2222222222 111111 111111 1111111 22222222 33333333333 111 33333333 555555555555555555555555555555555555555555555 111 111111 1 11111 222 66666666666666666666666666666666666666 111 11 1 111 111 11 22222222222 11 111 111111 1111111 111 11 1 1111 11 1 11111 11 111 6666666666666666666666666 2222 2222222222 11 33 1 3333333 111 11 111 11111111111 11 111 111 11111 111 1111 222222222 1 11 111 555555555555 1 1111 111 1 222222222 11111 1 3333333333333 11111 2 11 222 1 1 111 111111 1111 11
lowQualScore : 1 6 0000 7777777777 000 5 66 5 5 5 9999 00 1 0 8888888 3 5 55 5 5 5 5 5 5 5 5 0 5 0 55 0 333 5 5 5 66 0000 66 5555 888 5 66 0 66 7777777777777777 5 5555555555 66 5 5 5 0000 66 5 5 1111111111 5 444444 444444 66 5 6666666 5 5 00000000 5 88888888888 555 0 5 5 5 5 5 5 5 22222222 333333333333333333333333333333333333333333333 777 6 111 999999 3 66666 6 222 55555555555555555555555555555555555555 1 000 44 77 5 1 777 000 77 777 33 11111111111 5 0 33 666 5 000 999999 5 9999999 0 666 99 6 6 99 6 6 6 6 99 5 55 1 2222 7 5 77 5 66 1 6 7 3 6 3 6 33333 6 44 111 6666666666666666666666666 0000 1111111111 6 6 66 0 33 0 3333333 222 8 8 8 8 8 66 0 444 0 8 77777777777 3 0 0 11 444 8 8 8 888 8 0 8 33333 222 5555 3 7 6 6 666666666 0 0 3 8 6 5 33 5 555 5 5 5 0 3 222222222222 5 2 5 66 5 5 5 5 2222 77 000 1 1 6 88 666666666 22222 88 8 5 0000000000000 99999 8 3 11 8 8 999 5 0 8 111 8 0 666666 6 5555 00 2 6 6 6 6 6
lowQualScore : . . .... .......... ... . .. . . . .... .. . . ....... . . .. . . . . . . . . . . . .. . ... . . . .. .... .. .... ... . .. . .. ................ . .......... .. . . . .... .. . . .......... . ...... ...... .. . ....... . . ........ . ........... ... . . . . . . . . ........ ............................................. ... . ... ...... . ..... . ... ...................................... . ... .. .. . . ... ... .. ... .. ........... . . .. ... . ... ...... . ....... . ... .. . . .. . . . . .. . .. . .... . . .. . .. . . . . . . . ..... . .. ... ......................... .... .......... . . .. . .. . ....... ... . . . . . .. . ... . . ........... . . . .. ... . . . ... . . . ..... ... .... . . . . ......... . . . . . . .. . ... . . . . . ............ . . . .. . . . . .... .. ... . . . .. ......... ..... .. . . ............. ..... . . .. . . ... . . . ... . . ...... . .... .. . . . . . .
lowQualScore : 0 7 7777 6666666666 000 0 99 0 0 0 8888 00 4 7 0000000 1 0 66 0 0 0 0 0 0 0 0 0 0 1 11 0 999 0 0 0 99 4444 99 6666 888 0 99 2 99 2222222222222222 0 9999999999 99 0 0 0 6666 99 0 0 9999999999 0 444444 444444 99 0 2222222 0 0 77777777 7 66666666666 777 1 7 7 7 7 7 7 7 99999999 666666666666666666666666666666666666666666666 555 7 777 222222 3 77777 7 777 77777777777777777777777777777777777777 4 000 11 99 7 4 999 000 99 333 66 99999999999 7 7 66 777 7 000 777777 7 7777777 7 333 22 7 7 22 7 7 7 7 22 7 99 9 4444 9 7 44 7 44 3 7 3 2 7 3 7 00000 7 00 888 7777777777777777777777777 0000 0000000000 7 7 77 8 66 6 0000000 666 0 0 0 0 0 88 8 222 8 0 00000000000 2 8 8 00 000 0 0 0 444 0 8 0 22222 000 0000 2 3 7 7 555555555 8 6 8 0 7 7 66 7 777 7 7 7 1 6 666666666666 0 0 7 44 7 7 7 7 1111 44 000 4 4 7 88 222222222 88888 88 0 4 8888888888888 44444 0 2 00 0 0 666 8 6 0 888 0 8 888888 0 0000 33 5 7 7 7 7 7
consensus : AGAAACAGGGCGCA-CAA--G-GTAA----CA----TC---CCCCGCTT-GC--TA-TACCT-GGACTTTTA-AAAAGGA-AACGACAACTGAAAATTAACG-AAAGAT--AA--CCCAAG-TTGTATGTGATACA-GT-CAGT-CACTAAAGTT-ATATCC-T-GAC-AAGAG-CG-TGTGT-TTGATGACA-AAGTA-TTCGAGGTA--ATA-TA-TGAGGTATTT-GTCA--TTC-A-ATCTTCGT--GAT--TATGAAAT---ATAATTT-TTATT--CACTTGAA--TGGAGG---------A------AT-GTAGAAT-------TTT--TGT-G-AC-AAC----AGAC--CT-A-CAAAGAG----------CAC-ATGT------CCCGCTAC------TTCCCG--AA-AT-------GATA-GAAA-G--------CT-CTACT-----------AATGA---TTTTCTTTCG-AA-C-CGCT-CTG-TATA-TTCTG-A--------TATTC-------------A---------------C---T-----------TATT-G-AG-C---ATT------TTT-CTACT-----GCAAT-CCCCGGTGC-------------TTA-AAC---TT--AC--------CGTT---TTT-GTT--TT-GCCC-TT---AACT---GC--TTTTTA-CACAAA--ACAC------A-CACATCACA-CGAT--TGGGGAACTGG-CATT---CTT-GTGTTTTG-GTT--AT-NTCTAGCCCTATTTTCGAAC-TTG--C-ATG-TACA--TC-TG-AT-G-AA--AAAA-TTCTAACAAAATTCATTGAC-CCGCCGCCTT-T-ATA-ATTG-AAAAAAAAAAAT-TATGAATGTTATTTTTATT-GTT-AATAAA-ATAAAATTT--TAAAAAGGA-TTTTGCAGGATTCG-AACACACCTCCT-------------------------CAGATCAGTTACAAC----AC--ACAAAA-AACA-TACACGCCTAACCACA-TTCGCTACCC-CG--TGATTTA-AT-AGT-A-TT-CGA-AGGT-TTAAATTTGACTTC--GATAAAA-GGA---AGT-AAA-TGCCTAAAG--TTTT---TCTT-T-AAAAA-GTGTG-TTTTTTGTATA-TAATGG-GTCCAG-TC-TCCATTTTTTT---AAAACATGAAAATAGGATATACAGA-G-G---TTCACAACTATCATTTTAAACC-T-TCTTT-AGAA--TG-GAG---AC-TT-GACCCACTCAT-ATTTCAA---TCA--A---TCAATGTTTTAA-TGG-CTA-T-T-TTA-CACC----TAT-T---TTTCATCGAAAC-TGCG-TAT-GAGCTATGTTTT--AAC--AC-CCATT-ATTAATCAA-ACCTCAATTAATTTAGA--------TATAGAGAATCT-TATATTTGGT-GTA-GT--TGAG-A-TCAA-CCGACTAACTCATTTTTCAT-AAT--AG-AACCGAATTTTTTGTC--A--TTTTGAAATTTTTA-AGATATCCTGTGTCCTCAGAGCGGGGGATTTGCCCCGCC-TT-G-T-GCGCCCAGATTCTT
Reference ( family-2345 ) : AGAAACAGGGCGCA-CAA--G-GTAA----CA----TC---CCCCGCTT-GC--TA-TACCT-GGACTTTTA-AAAAGGA-AACGACAACTGAAAATTAACG-AAAGAT--AA--CCCAAG-TTGTATGTGATACA-GT-CAGT-CACTAAAGTT-ATATCC-T-GAC-AAGAG-CG-TGTGT-TTGATGACA-AAGTA-TTCGAGGTA--ATA-TA-TGAGGTATTT-GTCA--TTC-A-ATCTTCGT--GAT--TATGAAAT---ATAATTT-TTATT--CACTTGAA--TGGAGG---------A------AT-GTAGAAT-------TTT--TGT-G-AC-AAC----AGAC--CT-A-CAAAGAG----------CAC-ATGT------CCCGCTAC------TTCCCG--AA-AT-------GATA-GAAA-G--------CT-CTACT-----------AATGA---TTTTCTTTCG-AA-C-CGCT-CTG-TATA-TTCTG-A--------TATTC-------------A---------------C---T-----------TATT-G-AG-C---ATT------TTT-CTACT-----GCAAT-CCCCGGTGC-------------TTA-AAC---TT--AC--------CGTT---TTT-GTT--TT-GCCC-TT---AACT---GC--TTTTTA-CACAAA--ACAC------A-CACATCACA-CGAT--TGGGGAACTGG-CATT---CTT-GTGTTTTG-GTT--AT-NTCTAGCCCTATTTTCGAAC-TTG--C-ATG-TACA--TC-TG-AT-G-AA--AAAA-TTCTAACAAAATTCATTGAC-CCGCCGCCTT-T-ATA-ATTG-AAAAAAAAAAAT-TATGAATGTTATTTTTATT-GTT-AATAAA-ATAAAATTT--TAAAAAGGA-TTTTGCAGGATTCG-AACACACCTCCT-------------------------CAGATCAGTTACAAC----AC--ACAAAA-AACA-TACACGCCTAACCACACTTCGCTACCC-CG--TGATTTA-AT-AGT-A-TT-CGA-AGGT-TTAAATTTGACTTC--GATAAAA-GGA---AGT-AAA-TGCCTAAAG--TTTT---TCTT-T-AAAAA-GTGTG-TTTTTTGTATA-TAATGG-GTCCAG-TC-TCCATTTTTTT---AAAACATGAAAATAGGATATACAGA-G-G---TTCACAACTATCATTTTAAACC-T-TCTTT-AGAA--TG-GAG---AC-TT-GACCCACTCAT-ATTTCAA---TCA--A---TCAATGTTTTAA-TGG-CTA-T-T-TTA-CACC----TAT-T---TTTCATCGAAAC-TGCG-TAT-GAGCTATGTTTT--AAC--AC-CCATT-ATTAATCAA-ACCTCAATTAATTTAGA--------TATAGAGAATCT-TATATTTGGT-GTAGGT--TGAG-A-TC-A-CCGACTAACTCATTTTTCAT-AAT--AG-AACCGAATTTTTTGTC--A--TTTTGAAATTTTTA-AGATATCCTGTGTCCTCAGAGCGGGGGATTTGCCCCGCC-TT-G-T-GCGCCCAGATTCTT
gi|1 : AGAAACAGGGCGCA-CAA--G-GTAA-----A----TC---CCCCGCTTTGC--TA-TACCT-GGACTTTTACAAAAGGAGAACGACAACTGAAAATTAACG-AAAGAT--AA--CCCAAG-TTGTATGTGATACACGT-CAGT--ACTAAAGTT-ATATCC-T-GAC-AAGAG-CGGTGTGT-TTGATGACA-AAGTA-TTCAAAGTA--ATA-T--TGAGGTATTT-GTCAAATTCTA-ATCTTCGT--GAT--TATGAAAT---ATAATTT-TTATT--CACTTGAA--TGGAGG---------A-------T-GTAGAAT-------TTT--TGT-G-AC-AAC----AGAC---T-A-CAAAGAG----------CAC-ATGT------CCCGCTAC------TTTCCG--AA-AT-------GATA-GAAA-G--------CT--TACT-----------AATGA---TTTCTTTTCG-AA-CTCGCT-CTG-TATA-TTCTG-A--------T-TTC-------------A-------------------T-----------TATT-G-AG-C---ATT------TT--CTACT-----GCAAT-CCCCGATGC-------------TTA-AAC---TT--AC--------CGTT---TTT-GTT--TT-GCCT-TT---AACT---GC--TTTTTA-CACAAACTACAC------A-CACATCCTA-CGAT--TGGGGAACTCG-CATA---CTTCATGTGTTGCGTT--AT-TGTTAGCCCTATTTTCGAACCTTG--C-ATG-TACACATCATG-ATTG-AA--AACACTTCTAACAAAATTCATTGAC-CCGCCGCCTT-T-ATA-ATTG-AAAAAAAAAAAT-TATGAATGT-ATTCTTATT-GTT-AATAAA-ATAAAATTTCTTAAAAAGGA-TTTTGCAGGATTCG-AACACACCTCCT-------------------------CAGAT-AGTTACAAG----AC--ACAAAA-AACAGTACATGCCTAACC-CACTTCGCTACCCGCGCTTGATTTA-AT-AGT-ACTT-CGG-CGGTATTAATTCTGACTTC---ATAAAA-GGA---AGT-AGAGTGCCTAA-G--TTTTCTCTCTTCT-AAAAA-GTG-G-TTTTTTGTATA-TA-TGGAGTCCA--TC-TCCATTTTTTT---GAAACATGAAA-T-GGATTAACAGA-G-G---TTTACAACTATCATTTTAAACC-T-TCTTT-AGAA--TG-GAGG--AC-TT-GACCCACTCATCATTTCAAC--TCA--A---TCAATGTTTTAACTGG-CTA-T-T-TTA-CACC----TAT-T---TTTCATCAAAACTTGTGCTGT-GAGCT-TG-TTT--AAC--AC-CCATT-ATTAATCAA-ACCTCAATTAATTTAGA--------TATAGAAAATCT-TATATTTGGT-GTAGGTCATGAG-A-TCAA-CCGACTAACTCATTTTTCAT-AAT--AGTAACCGATTTTTGTGTCTTA--TTTCGAAATTTTTA-AGATACCCTGTGTCCTCAGAGCGGGGGATTTGCCTCGCC-TT-G-T-GCGCCCAGATTCTT
gi|10 : AGAAACAGGG---A-CAACCGTATAC----CA----AT---CCCCGCTT-ACACTA-AACCT-GGACTTTTA-AAAAGG--ACCGA-AACTGAAAATGAAC------AT--GA---CCAAG-TTGTATGT--TA-A-GTCCAGT-CACT-AAGTT-ATAT-C-T-G-C--AGAG-CG-TGTGTCTTGACGAC--AAGTA-TTCGAGG-----TA-CA-TGAGGTACTT-GT----TTC---ATCTTT-T--GCTGGTATTAAAT---ATGATT
gi|11 : aaaGC-------------TCA-AA----TT--AC---------GTT---TT--GTT--TT-GCCCATT---AACT---TC--TTTT-----CAAA--ACA-------A-AACAT---A-CGAC--TTGGACGCTTG-CATT---CTT-A-GTTTTG-GTT---T-AGCTAGTTCT
gi|12 : -TTTTC-AGAA--TC-GAG---AC-TT-GACCCATTCAT-A-TTCAAAACTCAGTA---TTGATCTTT--A-TGG-C-A-T-T-TTA-CACCCAAATAT-TAAGTCTCATTGGAACATGCA-Tcgtaccgactatcagcatagtatat
gi|13 : AGAATCAGAGTGCA-CAA--G-GTAA----TG----CCAAACCCCGCCT-AC-----TACCT-GGACTTTTA-AAAAGG--AACGACAACTGAAAATTAACggacgtgt
gi|15 : aATCCTGTGTC-TCAGAGCGGGGGATTTGCCCTGCA-TT-G-T-GCGCCCAGATTCTT
gi|16 : ---TCAATGTTT-GA-TGG-GTA-T-T-TTA-CACC----TAA-T---TTTCATCGAAAC-TGCta
gi|17 : cTTC-AGAA--TG-GAG---AC-TT-GACCCATTCAT-ATTTAAA---tgtg
gi|2 : tGGGCGCA-CAA--G-GTAAGTACCAA---TC---CCCCGCTT-GC--TAATACCT-GGACTTTTA-AAAAGGA-A-CGACAACTGAAAATTA-C---AATGT--A----------TTGGATGT---ACA-GT-CACTTCACTAAAGTTCATATCCCT-GACCAAGAG-CGCTGTGT-TTGATGACA-AAGTA-TTCGAGGTA--ATA-TACTGAGGTATTG-TTCA--TTC-A--TCTTCGT--GAT---ATGAAAT---ATAATTTCTTATT--CA-TTGAA--TGGAGG---------A------ATTGTAGA-T-------TTT--TGTCG-AC-ATC----AA----CT-A-CAAAG-G----------CA--ATGT------CCCG-TAC------TTCCAG--AA-AT-------GATAAGAAA-G--------CTTCTACTT----------AATGA---TTTTTCTTCG-AA-C-CG-T-CTGGTATA-TTCTGGA--------TATTC-------------AACAAG----------T---TAGTCACATATATATT-G-AGGC---ATT------TTT-CTACT-----GCAAT-CACCG-TGC-------------ATA-A-C---TT--AC---------GTT---T---GTT--TT-GCCC-TTTT-AACT---GC--TTTTTG-CACAAAG-ACAC------A-CA-ATCACA-C-AT--TGGGGA-CTGG-CATT---CTT-GT-TTATG-GTTTAGT-ATCTAGCCCTTATTTCGA-C-TTG--C-ATGCTACA--TC-TG-AT-G-AATAAAAA-TTCTTACAAA--TCATTGAC-C-GCCGGCTTAT-TTA-ATTGGAAAAAAAAAAATCTATGAATGTTATTT--ATT-GTA-AATAAA-ATAAAATGG--TGAAAGGAT-TTTTGCATGATTCGCAACACATC-CTT-------------------------CAGA-CA-TTACAAC---------CAAAACAACA-TACACGC-TAACCAC--TTCGCTACC------TGATTTG-ATGAGTTA-TT-CGA-AGGT-TTAAATTTGACTT---GATAAAG-GAA---AGT-AAA-TGCCTAAAG--TTTT---TCTT-TAAAAAA-GTGTG-TTTTTTATATA-TAATGG-GTCCAG-TCATCCA--TTTTT---AAAACATGAAAATAGGATATACAGA-GTG---T--AC-ACTATCA--TTAAACCTT-TCTTT-AGAA--TG-GAGTTTTC-TT-GACCCACTCAT-ATTCAAA---ACT--A---ACAATG-TTTAA-TGG-CTA-T-TGTTA--ACC----TATCT---TTTCATCAAAAC-TGCG-TATCGAGCT-------------------ATT-ATTAATCAA-ACCTCAATTAATTTAGA--------TAT-GAGAATCT-TA-ATTTGGT-GTA-GT--TGAG-ATTC-ATCCGACT-ACGCA-TTTTCAT-AATAGAG-AAACGAA-TTTTTGTC--ATTTTTTGAAAATTTTAGAGATATCCTGTGTCTCCAGAGCGGAGGTATTGCCCCGCCTTT-GTT-GCGCCAGGATTC
gi|3 : acagcGAAACAGG-CGCAGCAA--G-GTAATCACCA----TC---CCCCGGCT-GC--TA-TACCTTGGACTTTCA-AAAAGGA-A-CGACAACTGAAAATTAACG-A-------------------TGTATGTGATACA-GT-CAGT-CACTAA-GTT-AT--CC-T-GAC-AAGAGGCG-TGT-T-TTGATGACATACGTAATTCGAG-TAT-ATA-TA-TGAGGTATTT-GTCG--ATC-A--TCT-CGT--GAT---ATGAAAT---A-AATTT-TT-TT--C-TTTGAA--TGGAGG---------A------AT-GTAG----------TTT--TGT-GGAC-AAC----AGAC--CT-AACAAAGAG----------CAC-ATAT------CCCGCTAC------T-CCCG--AA-AT-------GATA-GAAA-G--------CT-CTACT-----------AATGA---TTTTCTGTCGGAA-C-CGCT-CTA-TTTAATTCTG-A--------TATTCCAACATTTAC---A---------------CATAT-----------TATT-G-AG-C---ATT------TTTTCTACT-----GCAAT-CTC--GTGC-------------TTA-A-----CT--AA--------CGTT---TT--GTT--T--GCCC-TTGTAAACT---GC--TTTT-A-CACAAA--ACAC------AACA-ATCACA-CGAT--TGGG-AACTGG-CATTGACCTT-GT---TTG-GTT--AT---CTAGCC-TATTTTCGA-C-TT---C-ATG-TACA--TC-TGAAT-G-AA--AAAA-TTCTAGCAAAA-TCATTGA--CCGCCG-CTT-T-ATATATTGAAAAAAAAAAAAT-TATGGATG-TA-TTGTATTGGTTAAATAAACATAAAA-TT--TAAAAAGGATTTTTGC-GGA-TCG-AACACAC--TCT-------------------------CAGAT-AG-TACAAC----ATAAAAAAAA-AACA-TACACG-CTAACCAC-TTGGGCT-CCA-CA--TAATTT--TT-AGT-A-TT-CGA-AGGT-TTAAATTTGACTTCATGA-AAAA-GGAAACAGTAAAA-TGC--AAAG--TTTT---TCTT-T-AAAAA-GTGTGTTTTTTTGTATACTAAT-G-GTCCAA-TC-T-CATTCTTTTTAAAAAACATG-AAATAGGATATACAGA-G-G---TT-AC-ACTA-CATTTCAACCT-T-TCTTT-AAAAC-TG-GAG---AC-TT-GACCAAATCA--ACTTCAATATTCA--AAACTCAATG-TTTAA-TGA--TATT-T-TTA-CACC-----AT-T---TTTCATCAAAAC-TGCG-TAT-GAGCTATGTCTTA-AACGAGC-CCATT-ATTATACAA-ACCTCAA-TAATTTAGA--------TAT--AGAATCTCTAATTTTGGT-GTA-GT--TGAG-A-TCAA-CCGACT-ACTCATTTTTTATAAAT--AG-ATCCGAATTTTTTGTC--A---TTTGAAATTT----AGATATCCTGTGTC--CAGA-C-GGGGATTTGCCCCGCC-TT-G-T-GCGCCCAGAGTCT
gi|4 : CGCTT-GC--TA-TACCT-G-ACTTTTA-AAAAGGA---CGACAACTGAAAATTAACG-AAAGAT--AAAACCCAAT-TTGT-TTTG-TACA-GT-CAGT-CAC-AAAGTT-ATATCC-T-GAC-AA-AG-CG-TGTGT-T-GATGACA-AAGTAGTTCGAGGTATAATA-TA-TGAGGTGTTT-GTCA--TTC-AGATCTCCTTCTGAT---ATGAAATTACATAATTT-TTATTTTCACTTGAG--TGGAGG---------G------AT-GTAGA-T-------TTT--TGT-G-ACGAAC----AGAC--CTTA-CAA-GAG----------CACCATGT------CCCAGCAC------TTCCCG--AATAT-------GATA-GAAACG--------CT-CT-CT-----------AATGA---TTT-CTTTCG-AA-C-CGCTTCTG-TATT-TGCTG-A--------TATTC-------------AACAGTTGTACAACATC---A-----------TTTT-GTAG-C---TCT------TTT-CTACT-----GCAAT-TCCC--TGC-------------TTA-A-C---TA--A------------T---TTT-GTT--TTTGCCC-AT---AACT---GC--TTTTTA-CACAA-----AC------A-CACATCACA-CGATA-TGGG--ACTGGCCATT---C---GT-TTTTG-GTT--CT-ATTTAGCCCTATTTTT-ACC-TTGTAC-ATG-TACA--TC-TG-AT-G--A--AAAA-TTCT-ACAAAATTCATTGAC-GC-CCGCTTT-T-----ATTG----AACAAAAAT-TATGAATGTTA--TTTATT-G-----TAAC-ATAAAA-TT--TAAAAAGGA-TTCTGCAGG-TTCG--ACACACTCCGT-------------------------CAGATCAG-TACAAC----AC--A-ATCA-AACA-TACACG-CTAACCACA-TTCGCT-TAC-CG--TGACTTATAT-AGT-A-TTGCGGTAGGTCTTAAA-TTGACTTC--AATTACC-GCA---A--------GCCT-AAG--TTTT---TATT-T-AAAAG-GTG----TTTTTGTATA-TAATGG-GTCCAG--C-TCCAT--------------AT----ATAGTATATTCAGA-G-G---TTC---ACTATCA-TTTAAACT-TCTCTTT-AGAAGGTGAGAG---ACATTGGACCCACTCAT-ATTGCAA-----A--AC--TCAATGTTT--A-TGG-CTA-T-T-TTAGCA-C----TA--T---TTTCACAAAAGC-TGCG-TA--GAGTTATG-TTT--AAC--ACACCATTAATTAATCAACACCTCAA-TAATGTAGG---------ATTAAGAATC--TA-ATTTGGTGGTAAGT--TGAGAA-TC---CCGACATACTCATTTTTCAT-AAT---G-GACCGAATTTTTTGTC--G--TTTTGAAATTTT---AGATATC---TGTTCTCAGAGCGAGGGATTTG-CCCG-C-TT-G-TAGCGCC
gi|5 : AA-TTCTA-CAAAAG-CATTAAT-T-GTCGCCTT-TTATA--TTG-AACAAGAAGA---T-TGAATGTTATTTTTG---GTT-AAATAA-TTAAAATTC---AAAAATGA-TTTTGCAGGATTGG-AAC----CTCCTCAATTCAAAACACACAAAAAGCATACAGATCTTTTTCATCTTTAAC--ACAAAA-ACAA-TACACGC-TCACCAC--TTCGCTACC---G---GATT-A-AT-A-T-A-TT-CAA-AAGT---AAATTCGACTCC--GATAAAAAGGA---AGT-AA--TGTTTAAAAGTTTTT---TCTT-T-AAAAGTGCGGG-TTTTTTGTTTA-GAATGG-GTTCAGCTT-TCC--TTTTTA---AAAATATGAAAATAGGATATACAGA-G-GCATTTCGCAA
gi|5 : GAAGAT--GA-ATACAGAAG-G---T--ACACTTATTATTT-AAACC-T-TTTTTCAGAA--TG-GAA---AC-TT-GGCCAACT-AT-ATT-CAA-----A--AC--TCAGTGTTTTAA-TGGGCTA-TCT-TTA-CACC----TAT-T---TTCCATCAAAAC-TGCG-TAT-GAGCCATGTTTTTTAAC--AC-CCATT--TTAATCAA-GCAT-AAGTAATTTAGATACATCTGTATACAGAATTC-T-TATTTGGT-GTA-GT--TGAG-A-T----CCAACTAACTCA-TTTTCAC-AAT--AG-AACCGAATTTTTTGGC--A--TTTTGAAA-TGTTA-AGGAATCCTGCGT-CTCAGAGATAGGGATTTG--CCGCC-TTGG-T-GCGCCCAACTTCTTggccaagtttccgattcgcgtttcggacaacacttggcttgcgaagatgaatacagaaggtacacttattatttaaaccttttttcagaatggaaacttggccaactatattcaaaactcagtgttttaatgggctatctttacacctattttccatcaaaactgcgtatgagccatgttttttaacacccattttaatcaagcataagtaatttagatacatctgtatacagaattcttatttggtgtagttgagatccaactaactcattttcacaatagaaccgaattttttggcattttgaaatgttaaggaatcctgcgtctcagagatagggatttgccgccttggtgcgcccaacttctt
gi|6 : aattctacaaaagcattaattgtcgccttttatattgaacaagaagattgaatgttatttttggttaaataattaaaattcaaaaatgattttgcaggattggaacctcctcaattcaaaacacacaaaaagcatacagatctttttcatctttaacacaaaaacaatacacgctcaccacttcgctaccggattaatatattcaaaagtaaattcgactccgataaaaaggaagtaatgtttaaaagttttttctttaaaagtgcgggttttttgtttagaatgggttcagctttcctttttaaaaatatgaaaataggatatacagaggcatttcgcaaggccaagtttccgattcgcgtttcggacaacacttggcttgcT-CTATT--CACATGAAAATGGAGGTGAGGCATTATTCCCCAT-GTAGAATATGCTGTTTTGGTGT-G-AC-AACCTTTAGACTTCT-A-CAAAGAGTTTGGGCTTACAC-ATGT------CCCGCTACCTACTCTTCCTTTTAA-ATCTGGGAGGGTA-AAAA-GTAATATTGCT-CTATTTGGGGCAGGATAATGAGTTTTTTCTTTCG-AAAC-CGCT-CTG-TATA-TTCTG-AGGGT----TATTCTAACAGTTTTATCA---------------CATAT-----------TATTAG-AG-C---ATT------TTTTCTATTAACTTGAAAT-ACC--GTGC-------------TTATAACATTTTGGACATA-----CGTTGTATTTAGTTATCT-GCCT-TT---AACTTAAGCCATTTTTAACACAAA--ACACTATAGTA-CGAATCACAACGAT--TGGGGAACTGG-CATT---C-T-GTGTTTTG-GTT--ATATTCTAGCCCTATTTTCG-AC-TTG--CAATG-TACA--TC-TG-AT-GAAA--AAAA-TTCT-ACAAAA-TCATTGACGCCGCCG-CTT-T-ATA-ATTG----AAAAAAAAT-TATGAATGTT-TATTTATT-GTTAAATAAA-ATAAA--TT--TAAAAAGGA-TTTT-CAGGATTCG--ACACA-CTCCC-------------------------CAGATCAG-TACAAC----AC--AAAAAA-GACA-TACACGC
gi|7 : AAG-TTGTATGTGATACA-GT-TAGT-CACTAAAGTT-ATATCC-T-GAT-AAGAG-AG-T----------------AACA-TTCGAGGTA---CA-TA-C------------CT--TTC-A-ATCTTCGT--GAT---ATCAAAT---ATAATTT-TTATT--CATTTAAA--TGGAGG---------A------AT-GTA-AAT-------TTT--TCT-A-AC-ATC----AGAC--CT-A-CAAAGGG----------TAC-ATGTACATGTTCTGCTAC------TTCCCA--AA-AC-------GATA-GAAA-G--------CT-CTACT-----------AATGAC--TTTTCTTTAG-AC-A-CGCT-CTC-TATA-TTCTG-ATCGCCTGCTATTG-------------G---------------T---T-----------TACT-C-AC-CCTTATTCTACAGTTT-CTCCT-----GCAATGCCGCGTTGCTGGAGCAAAGTATTTA-AACGT-TT--GCTCAACTTACG-T---TTT-GTT--TT-GCCCATT---AACT---GC--TTTTTA-CACAAA--ACAC------A----ATCGTA---ATTCTTGGGAGCTGG-CATT---CT---TGTTGTG-GTT--AA-TTCTAGCCGTATTTTCGAA--TTG--C-ATG-TACG--TC-TG-GT-G-AA--AAAG-CTCT-ACAAAATT-ATTGA--CCGTCACTTG-T-ATA-ATTG-AAAAgtttttttttttttt
gi|8 : AGAAACAGGGCGCA-CAA-----CAA----------TC---CCCCGCTT-AC--TA-TACCT-GGACT-----------------ACAACTGAAAATTAACG-AAAGATTAAA--CCC-AG-TTGTATGTGATACA-GT-CAGT-CACTAAAGTT-ATATCC-TAGAC-AAGAG-CG-TGTGT-TTGATGACA-AAGTA-TTCGAGGTAATATA-TA-TGAGGTATTTGGTCA--TTC-A-ATCTTCGT--GA---TATGAAAT---ATAATTT-TTATT--CACTTGAA--TGGAGG---------A------AT-GTAG-AT-------TTT--TGT-G-AC-AAC----AGAC--CT-G-CAAAGAG----------CAC-ATGT------CCCGCTAC------TTCCCG--AA-AT-------GATA-GAAA-G--------CT-CTACTA----------AATGA---TTTTCTTTCG-AA-C-CGCT-CTG-TATA-TTCTG-A--------TATTC-------------A---------------
gi|9 : aAA--G-GTAA----TACCAATC---CCCCGCTT-GC--TA-TACCT-GGACTTTTA-AAAAGG--AACGACAACTG-AAATTAACGAAAAGAT--AA--CCCAAGTTTGTATGTGATACA-GT-CAGT-CACTAAAGTT-ATATCC-T-GAC-AAGAG-CG-TGTGT-TTGATGACA-AAGTA-TTCGAGGTAT-ATATTA-TGAGGTATTT-GTCA--TTC-A-ATCTTCGT--GA---TATG-AAT---ATAATTT-TTA-T--CACTTGAA--TGGAGG---------A------AT-GTAG-AT-------TTT--TGT-G-AC-AAC----AGAC--CT-G-CAAAGAG----------CAC-ATGT------CCCGCTAC------TTCCCG--AA-AT-------GATA-GAAA-acagttatcacatattatttg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AGCCAAGTGTCCGATTCGCTTAGCTTGTCGAAGTCGACATTGGCTTGCGAAGATGCCAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 1111 4444444444 111 2222 11 1111111 1 1 222 1111 2222 2222222222222222 2222222222 1111 2222222222 111111 111111 1111111 22222222 33333333333 111 33333333 555555555555555555555555555555555555555555555 111 111111 1 11111 222 66666666666666666666666666666666666666 111 11 1 111 111 11 22222222222 11 111 111111 1111111 111 11 111 11 1111 111 11 111 6666666666666666666666666 1111 1111 2 2 1 3333333 11 111 222222222 11 111 1 11111 111 1111 2222222222 1 11 111 555555555555555 1 1111 111 1 222222222222222222 222222222 111 11 11 1 1 111 111111 1111 11
lowQualScore : 1 6 0000 7777777777 000 5 66 5 5 5 9999 00 1 0 8888888 3 5 55 5 5 5 5 5 5 5 5 0 5 0 55 0 333 5 5 5 66 0000 66 5555 888 5 66 0 66 7777777777777777 5 5555555555 66 5 5 5 0000 66 5 5 1111111111 5 444444 444444 66 5 6666666 5 5 00000000 5 88888888888 555 0 5 5 5 5 5 5 5 22222222 333333333333333333333333333333333333333333333 777 6 111 999999 3 66666 6 222 55555555555555555555555555555555555555 1 000 44 77 5 1 777 000 77 777 33 11111111111 5 0 33 666 5 000 999999 5 9999999 0 666 99 6 6 99 6 6 6 6 99 5 55 99 333 22 5 77 5 00 1 888 7 3 1111 6 6 3 666 6 44 000 6666666666666666666666666 1111 4444 6 6 99 6 0 8 5 0 3333333 0 88 8 8 8 8 8 66 0 444 0 8 666666666 3 0 0 11 444 8 8 8 5 8 8 0 8 33333 222 5555 7 7 6 6 1111111111 0 0 3 8 6 5 33 5 555 5 5 5 0 3 444444444444444 9 5 66 5 5 5 5 2222 77 000 1 1 6 88 555555555555555555 88 8 66 999999999 6 3 222 8 8 8 11 8 8 11 5 0 8 111 8 0 666666 6 5555 00 2 6 6 6 6 6
lowQualScore : . . .... .......... ... . .. . . . .... .. . . ....... . . .. . . . . . . . . . . . .. . ... . . . .. .... .. .... ... . .. . .. ................ . .......... .. . . . .... .. . . .......... . ...... ...... .. . ....... . . ........ . ........... ... . . . . . . . . ........ ............................................. ... . ... ...... . ..... . ... ...................................... . ... .. .. . . ... ... .. ... .. ........... . . .. ... . ... ...... . ....... . ... .. . . .. . . . . .. . .. .. ... .. . .. . .. . ... . . .... . . . ... . .. ... ......................... .... .... . . .. . . . . . ....... . .. . . . . . .. . ... . . ......... . . . .. ... . . . . . . . . ..... ... .... . . . . .......... . . . . . . .. . ... . . . . . ............... . . .. . . . . .... .. ... . . . .. .................. .. . .. ......... . . ... . . . .. . . .. . . . ... . . ...... . .... .. . . . . . .
lowQualScore : 0 7 7777 6666666666 000 0 99 0 0 0 8888 00 4 7 0000000 1 0 66 0 0 0 0 0 0 0 0 0 0 1 11 0 999 0 0 0 99 4444 99 6666 888 0 99 2 99 2222222222222222 0 9999999999 99 0 0 0 6666 99 0 0 9999999999 0 444444 444444 99 0 2222222 0 0 77777777 7 66666666666 777 1 7 7 7 7 7 7 7 99999999 666666666666666666666666666666666666666666666 555 7 777 222222 3 77777 7 777 77777777777777777777777777777777777777 4 000 11 99 7 4 999 000 99 333 66 99999999999 7 7 66 777 7 000 777777 7 7777777 7 333 22 7 7 22 7 7 7 7 22 7 99 99 000 44 7 44 7 77 3 333 3 2 8888 7 7 2 555 7 00 333 7777777777777777777777777 8888 2222 7 7 22 7 0 0 6 6 0000000 8 88 0 0 0 0 0 88 8 222 8 0 000000000 2 8 8 00 000 0 0 0 4 0 0 8 0 22222 000 0000 3 3 7 7 5555555555 8 6 8 0 7 7 66 7 777 7 7 7 1 6 333333333333333 0 7 44 7 7 7 7 1111 44 000 4 4 7 88 666666666666666666 88 0 44 888888888 0 8 222 0 0 0 00 0 0 44 8 6 0 888 0 8 888888 0 0000 33 5 7 7 7 7 7
consensus : AGAAACAGGGCGCA-CAA--G-GTAA----CA----TC---CCCCGCTT-GC--TA-TACCT-GGACTTTTA-AAAAGGA-AACGACAACTGAAAATTAACG-AAAGAT--AA--CCCAAG-TTGTATGTGATACA-GT-CAGT-CACTAAAGTT-ATATCC-T-GAC-AAGAG-CG-TGTGT-TTGATGACA-AAGTA-TTCGAGGTA--ATA-TA-TGAGGTATTT-GTCA--TTC-A-ATCTTCGT--GAT--TATGAAAT---ATAATTT-TTATT--CACTTGAA--TGGAGG---------A------AT-GTAGAAT-------TTT--TGT-G-AC-AAC----AGAC--CT-A-CAAAGAG----------CAC-ATGT------CCCGCTAC------TTCCCG--AA-AT-------GATA-GAAA-G--------CT-CTACT-----------AATGA---TTTTCTTTCG-AA-C-CGCT-CTG-TATA-TTCTG-A--------TATTC-------------A---------------C---T-----------TATT-G-AG-C---ATT------TTT-CTACT-----GCAAT-CCCCGGTGC-------------TTA-AAC---TT--AC--------CGTT---TTT-GTT--TT-GCCC-TT---AACT---GC--TTTTTA-CACAAA--ACAC------A-CACATCACA-CGAT--TGGGGAACTGG-CATT---CTT-GTGTTTTG-GTT--AT-NTCTAGCCCTATTTTCGAAC-TTG--C-ATG-TACA--TC-TGA-T-G-AA--AAAA-TTCTAACAAAATTCATTGAC-CCGCCGCCTT-T-ATA-ATTG-AAAAAAAAAAA-T-TATGAATGTTATTTTTATTG-TT-AA-TAAA-ATAAAATTT--TAAAAAGGATTTT-GCAGGATTCG-AACACACCTCCT-------------------------CAGATCAGTTACAAC----ACACAAAA-AA--CA-TACACGCCTAACC-AC-TTCGCTACCC-CG--TGATTTA-AT-AGT-A-TT-CGA-AGGT-TTAAATTTGACTTC--GATAAAA-GGAA---GTAAA-TGCCTAAAG--TTTT---TCTT-T-AAAAA-GTGTGTTTTTT-GTATA-TAATGG-GTCCAG-TC-TCCATTTTTTT---AAAACATGAAAATAGGATATACAGA-G-G---TTCACAACTATCATTTTAAACC-T-TCTTT-AGAA--TG-GAG---AC-TT-GACCCACTCAT-ATTTCAA---T---CA--A---TCAATGTTTTAA-TGG-CTAT-T-TT-A-CACC----TAT-T---TTTCATCGAAAC-TGCG-TAT-GAGCTATGTTTT--AA-CA--C-CCATT-ATTAATCAA-ACCTCAATTAATTTAGA--------TATAGAGAATCTTATATTTGGT-GT-A-GT--TGAG-A-TCAACCGACTAACTCATTTTTCAT-AAT--AG-AACCGAATTTTTTGTC--A--TTTTGAAATTTTTA-AGATATCCTGTGTCCTCAGAGCGGGGGATTTGCCCCGCC-TT-G-T-GCGCCCAGATTCTT
Reference ( family-2345 ) : AGAAACAGGGCGCA-CAA--G-GTAA----CA----TC---CCCCGCTT-GC--TA-TACCT-GGACTTTTA-AAAAGGA-AACGACAACTGAAAATTAACG-AAAGAT--AA--CCCAAG-TTGTATGTGATACA-GT-CAGT-CACTAAAGTT-ATATCC-T-GAC-AAGAG-CG-TGTGT-TTGATGACA-AAGTA-TTCGAGGTA--ATA-TA-TGAGGTATTT-GTCA--TTC-A-ATCTTCGT--GAT--TATGAAAT---ATAATTT-TTATT--CACTTGAA--TGGAGG---------A------AT-GTAGAAT-------TTT--TGT-G-AC-AAC----AGAC--CT-A-CAAAGAG----------CAC-ATGT------CCCGCTAC------TTCCCG--AA-AT-------GATA-GAAA-G--------CT-CTACT-----------AATGA---TTTTCTTTCG-AA-C-CGCT-CTG-TATA-TTCTG-A--------TATTC-------------A---------------C---T-----------TATT-G-AG-C---ATT------TTT-CTACT-----GCAAT-CCCCGGTGC-------------TTA-AAC---TT--AC--------CGTT---TTT-GTT--TT-GCCC-TT---AACT---GC--TTTTTA-CACAAA--ACAC------A-CACATCACA-CGAT--TGGGGAACTGG-CATT---CTT-GTGTTTTG-GTT--AT-NTCTAGCCCTATTTTCGAAC-TTG--C-ATG-TACA--TC-TGA-T-G-AA--AAAA-TTCTAACAAAATTCATTGAC-CCGCCGCCTT-T-ATA-ATTG-AAAAAAAAAAA-T-TATGAATGTTATTTTTATTG-TT-AA-TAAA-ATAAAATTT--TAAAAAGGATTTT-GCAGGATTCG-AACACACCTCCT-------------------------CAGATCAGTTACAAC----ACACAAAA-AA--CA-TACACGCCTAACC-ACATTCGCTACCC-CG--TGATTTA-AT-AGT-A-TT-CGA-AGGT-TTAAATTTGACTTC--GATAAAA-GGAA---GTAAA-TGCCTAAAG--TTTT---TCTT-T-AAAAA-GTGTGTTTTTT-GTATA-TAATGG-GTCCAG-TC-TCCATTTTTTT---AAAACATGAAAATAGGATATACAGA-G-G---TTCACAACTATCATTTTAAACC-T-TCTTT-AGAA--TG-GAG---AC-TT-GACCCACTCAT-ATTTCAA---T---CA--A---TCAATGTTTTAA-TGG-CTAT-T-TT-A-CACC----TAT-T---TTTCATCGAAAC-TGCG-TAT-GAGCTATGTTTT--AA-CA--C-CCATT-ATTAATCAA-ACCTCAATTAATTTAGA--------TATAGAGAATCTTATATTTGGT-GT-A-GT--TGAG-A-TCAACCGACTAACTCATTTTTCAT-AAT--AG-AACCGAATTTTTTGTC--A--TTTTGAAATTTTTA-AGATATCCTGTGTCCTCAGAGCGGGGGATTTGCCCCGCC-TT-G-T-GCGCCCAGATTCTT
gi|1 : AGAAACAGGGCGCA-CAA--G-GTAA-----A----TC---CCCCGCTTTGC--TA-TACCT-GGACTTTTACAAAAGGAGAACGACAACTGAAAATTAACG-AAAGAT--AA--CCCAAG-TTGTATGTGATACACGT-CAGT--ACTAAAGTT-ATATCC-T-GAC-AAGAG-CGGTGTGT-TTGATGACA-AAGTA-TTCAAAGTA--ATA-T--TGAGGTATTT-GTCAAATTCTA-ATCTTCGT--GAT--TATGAAAT---ATAATTT-TTATT--CACTTGAA--TGGAGG---------A-------T-GTAGAAT-------TTT--TGT-G-AC-AAC----AGAC---T-A-CAAAGAG----------CAC-ATGT------CCCGCTAC------TTTCCG--AA-AT-------GATA-GAAA-G--------CT--TACT-----------AATGA---TTTCTTTTCG-AA-CTCGCT-CTG-TATA-TTCTG-A--------T-TTC-------------A-------------------T-----------TATT-G-AG-C---ATT------TT--CTACT-----GCAAT-CCCCGATGC-------------TTA-AAC---TT--AC--------CGTT---TTT-GTT--TT-GCCT-TT---AACT---GC--TTTTTA-CACAAACTACAC------A-CACATCCTA-CGAT--TGGGGAACTCG-CATA---CTTCATGTGTTGCGTT--AT-TGTTAGCCCTATTTTCGAACCTTG--C-ATG-TACACATCATGA-TTG-AA--AACACTTCTAACAAAATTCATTGAC-CCGCCGCCTT-T-ATA-ATTG-AAAAAAAAAAA-T-TATGAATGT-ATTCTTATTG-TT-AA-TAAA-ATAAAATTTCTTAAAAAGGATTTT-GCAGGATTCG-AACACACCTCCT-------------------------CAGAT-AGTTACAAG----ACACAAAA-AA--CAGTACATGCCTAACCCAC-TTCGCTACCCGCGCTTGATTTA-AT-AGT-ACTT-CGG-CGGTATTAATTCTGACTTC---ATAAAA-GGAA---GTAGAGTGCCTAA-G--TTTTCTCTCTTCT-AAAAA-GTG-GTTTTTT-GTATA-TA-TGGAGTCCA--TC-TCCATTTTTTT---GAAACATGAAA-T-GGATTAACAGA-G-G---TTTACAACTATCATTTTAAACC-T-TCTTT-AGAA--TG-GAGG--AC-TT-GACCCACTCATCATTTCAAC--T---CA--A---TCAATGTTTTAACTGG-CTAT-T-TT-A-CACC----TAT-T---TTTCATCAAAACTTGTGCTGT-GAGCT-TG-TTT--AA-CA--C-CCATT-ATTAATCAA-ACCTCAATTAATTTAGA--------TATAGAAAATCTTATATTTGGT-GT-AGGTCATGAG-A-TCAACCGACTAACTCATTTTTCAT-AAT--AGTAACCGATTTTTGTGTCTTA--TTTCGAAATTTTTA-AGATACCCTGTGTCCTCAGAGCGGGGGATTTGCCTCGCC-TT-G-T-GCGCCCAGATTCTT
gi|10 : AGAAACAGGG---A-CAACCGTATAC----CA----AT---CCCCGCTT-ACACTA-AACCT-GGACTTTTA-AAAAGG--ACCGA-AACTGAAAATGAAC------AT--GA---CCAAG-TTGTATGT--TA-A-GTCCAGT-CACT-AAGTT-ATAT-C-T-G-C--AGAG-CG-TGTGTCTTGACGAC--AAGTA-TTCGAGG-----TA-CA-TGAGGTACTT-GT----TTC---ATCTTT-T--GCTGGTATTAAAT---ATGATT
gi|11 : aaaGC-------------TCA-AA----TT--AC---------GTT---TT--GTT--TT-GCCCATT---AACT---TC--TTTT-----CAAA--ACA-------A-AACAT---A-CGAC--TTGGACGCTTG-CATT---CTT-A-GTTTTG-GTT---T-AGCTAGTTCT
gi|12 : -TTTTC-AGAA--TC-GAG---AC-TT-GACCCATTCAT-A-TTCAAAACT---CAGTA---TTGATCTTT--A-TGG-C-AT-T-TT-A-CACCCAAATAT-TAAGTCTCATTGGAACATGCA-Tcgtaccgactatcagcatagtatat
gi|13 : AGAATCAGAGTGCA-CAA--G-GTAA----TG----CCAAACCCCGCCT-AC-----TACCT-GGACTTTTA-AAAAGG--AACGACAACTGAAAATTAACggacgtgt
gi|15 : aATCCTGTGTC-TCAGAGCGGGGGATTTGCCCTGCA-TT-G-T-GCGCCCAGATTCTT
gi|16 : ---TCAATGTTT-GA-TGG-GTAT-T-TT-A-CACC----TAA-T---TTTCATCGAAAC-TGCta
gi|17 : cTTC-AGAA--TG-GAG---AC-TT-GACCCATTCAT-ATTTAAA---tgtg
gi|2 : tGGGCGCA-CAA--G-GTAAGTACCAA---TC---CCCCGCTT-GC--TAATACCT-GGACTTTTA-AAAAGGA-A-CGACAACTGAAAATTA-C---AATGT--A----------TTGGATGT---ACA-GT-CACTTCACTAAAGTTCATATCCCT-GACCAAGAG-CGCTGTGT-TTGATGACA-AAGTA-TTCGAGGTA--ATA-TACTGAGGTATTG-TTCA--TTC-A--TCTTCGT--GAT---ATGAAAT---ATAATTTCTTATT--CA-TTGAA--TGGAGG---------A------ATTGTAGA-T-------TTT--TGTCG-AC-ATC----AA----CT-A-CAAAG-G----------CA--ATGT------CCCG-TAC------TTCCAG--AA-AT-------GATAAGAAA-G--------CTTCTACTT----------AATGA---TTTTTCTTCG-AA-C-CG-T-CTGGTATA-TTCTGGA--------TATTC-------------AACAAG----------T---TAGTCACATATATATT-G-AGGC---ATT------TTT-CTACT-----GCAAT-CACCG-TGC-------------ATA-A-C---TT--AC---------GTT---T---GTT--TT-GCCC-TTTT-AACT---GC--TTTTTG-CACAAAG-ACAC------A-CA-ATCACA-C-AT--TGGGGA-CTGG-CATT---CTT-GT-TTATG-GTTTAGT-ATCTAGCCCTTATTTCGA-C-TTG--C-ATGCTACA--TC-TGA-T-G-AATAAAAA-TTCTTACAAA--TCATTGAC-C-GCCGGCTTAT-TTA-ATTGGAAAAAAAAAAA-TCTATGAATGTTATTT--ATTG-TA-AA-TAAA-ATAAAATGG--TGAAAGGATTTTT-GCATGATTCGCAACACATC-CTT-------------------------CAGA-CA-TTACAAC-------CAAAACAA--CA-TACACGC-TAACC-AC-TTCGCTACC------TGATTTG-ATGAGTTA-TT-CGA-AGGT-TTAAATTTGACTT---GATAAAG-GAAA---GTAAA-TGCCTAAAG--TTTT---TCTT-TAAAAAA-GTGTGTTTTTT-ATATA-TAATGG-GTCCAG-TCATCCA--TTTTT---AAAACATGAAAATAGGATATACAGA-GTG---T--AC-ACTATCA--TTAAACCTT-TCTTT-AGAA--TG-GAGTTTTC-TT-GACCCACTCAT-ATTCAAA---A---CT--A---ACAATG-TTTAA-TGG-CTAT-TGTT-A--ACC----TATCT---TTTCATCAAAAC-TGCG-TATCGAGCT--------------------ATT-ATTAATCAA-ACCTCAATTAATTTAGA--------TAT-GAGAATCTTA-ATTTGGT-GT-A-GT--TGAG-ATTCATCCGACT-ACGCA-TTTTCAT-AATAGAG-AAACGAA-TTTTTGTC--ATTTTTTGAAAATTTTAGAGATATCCTGTGTCTCCAGAGCGGAGGTATTGCCCCGCCTTT-GTT-GCGCCAGGATTC
gi|3 : acagcGAAACAGG-CGCAGCAA--G-GTAATCACCA----TC---CCCCGGCT-GC--TA-TACCTTGGACTTTCA-AAAAGGA-A-CGACAACTGAAAATTAACG-A-------------------TGTATGTGATACA-GT-CAGT-CACTAA-GTT-AT--CC-T-GAC-AAGAGGCG-TGT-T-TTGATGACATACGTAATTCGAG-TAT-ATA-TA-TGAGGTATTT-GTCG--ATC-A--TCT-CGT--GAT---ATGAAAT---A-AATTT-TT-TT--C-TTTGAA--TGGAGG---------A------AT-GTAG----------TTT--TGT-GGAC-AAC----AGAC--CT-AACAAAGAG----------CAC-ATAT------CCCGCTAC------T-CCCG--AA-AT-------GATA-GAAA-G--------CT-CTACT-----------AATGA---TTTTCTGTCGGAA-C-CGCT-CTA-TTTAATTCTG-A--------TATTCCAACATTTAC---A---------------CATAT-----------TATT-G-AG-C---ATT------TTTTCTACT-----GCAAT-CTC--GTGC-------------TTA-A-----CT--AA--------CGTT---TT--GTT--T--GCCC-TTGTAAACT---GC--TTTT-A-CACAAA--ACAC------AACA-ATCACA-CGAT--TGGG-AACTGG-CATTGACCTT-GT---TTG-GTT--AT---CTAGCC-TATTTTCGA-C-TT---C-ATG-TACA--TC-TGAAT-G-AA--AAAA-TTCTAGCAAAAT-CATTGAC-C-GCCGC-TT-T-ATATATTG-AAAAAAAAAAAAT-TATGGATGT-ATTGT-ATTGGTT-AAATAAACATAAAATTT---AAAAAGGATTTTTGC-GGAT-CG-AACACACT--CT-------------------------CAGAT-AGT-ACAAC----ATAAAAAA-AAAACA-TACACGC-TAACC-ACTTGGGCT-CCA-CA--TAATTTT--T-AGT-A-TT-CGA-AGGT-TTAAATTTGACTTCATGA-AAAA-GGAAACAGTAAAATGC--AAAG--TTTT---TCTT-T-AAAAA-GTGTGTTTTTTTGTATACTAATGG--TCCAA-TC-TC-ATTCTTTTTAAAAAACATGAAA-TAGGATATACAGA-G-G---TT-ACA-CTA-CATTTCAACCT-T-TCTTT-AAAAC-TG-GAG---AC-TT-GACCAAATCA--ACTTCAA---TATTCA--AAACTCAATGTTT-AA-TGA--TAT-T-TTTA-CACC-----AT-T---TTTCATCAAAAC-TGCG-TAT-GAGCTATGTCTT--AAACGAGC-CCATT-ATTATACAA-ACCTCAAT-AATTTAGA--------TATAGAATCTCTAAT-TTTGGT-GT-A-GT--TGAG-A-TCAACCGACT-ACTCATTTTTTATAAAT--AG-ATCCGAATTTTTTGTC--A---TTTGAAATTT----AGATATCCTGTGTC--CAGA-C-GGGGATTTGCCCCGCC-TT-G-T-GCGCCCAGAGTCT
gi|4 : CGCTT-GC--TA-TACCT-G-ACTTTTA-AAAAGGA---CGACAACTGAAAATTAACG-AAAGAT--AAAACCCAAT-TTGT-TTTG-TACA-GT-CAGT-CAC-AAAGTT-ATATCC-T-GAC-AA-AG-CG-TGTGT-T-GATGACA-AAGTAGTTCGAGGTATAATA-TA-TGAGGTGTTT-GTCA--TTC-AGATCTCCTTCTGAT---ATGAAATTACATAATTT-TTATTTTCACTTGAG--TGGAGG---------G------AT-GTAGA-T-------TTT--TGT-G-ACGAAC----AGAC--CTTA-CAA-GAG----------CACCATGT------CCCAGCAC------TTCCCG--AATAT-------GATA-GAAACG--------CT-CT-CT-----------AATGA---TTT-CTTTCG-AA-C-CGCTTCTG-TATT-TGCTG-A--------TATTC-------------AACAGTTGTACAACATC---A-----------TTTT-GTAG-C---TCT------TTT-CTACT-----GCAAT-TCCC--TGC-------------TTA-A-C---TA--A------------T---TTT-GTT--TTTGCCC-AT---AACT---GC--TTTTTA-CACAA-----AC------A-CACATCACA-CGATA-TGGG--ACTGGCCATT---C---GT-TTTTG-GTT--CT-ATTTAGCCCTATTTTT-ACC-TTGTAC-ATG-TACA--TC-TGA-T-G--A--AAAA-TTCT-ACAAAATTCATTGAC-GC-CCGCTTT-T-----ATTG----AACAAAAA-T-TATGAATGTTA--TTTATTG-------TAAC-ATAAAA-TT--TAAAAAGGATTCT-GCAGG-TTCG--ACACACTCCGT-------------------------CAGATCAG-TACAAC----ACA-ATCA-AA--CA-TACACG-CTAACC-ACATTCGCT-TAC-CG--TGACTTATAT-AGT-A-TTGCGGTAGGTCTTAAA-TTGACTTC--AATTACC-GCAA----------GCCT-AAG--TTTT---TATT-T-AAAAG-GTG---TTTTT-GTATA-TAATGG-GTCCAG--C-TCCAT--------------AT----ATAGTATATTCAGA-G-G---TTC---ACTATCA-TTTAAACT-TCTCTTT-AGAAGGTGAGAG---ACATTGGACCCACTCAT-ATTGCAA--------A--AC--TCAATGTTT--A-TGG-CTAT-T-TT-AGCA-C----TA--T---TTTCACAAAAGC-TGCG-TA--GAGTTATG-TTT--AA-CA--CACCATTAATTAATCAACACCTCAA-TAATGTAGG---------ATTAAGAATC-TA-ATTTGGTGGTAA-GT--TGAGAA-TC--CCGACATACTCATTTTTCAT-AAT---G-GACCGAATTTTTTGTC--G--TTTTGAAATTTT---AGATATC---TGTTCTCAGAGCGAGGGATTTG-CCCG-C-TT-G-TAGCGCC
gi|5 : AA-TTCTA-CAAAAG-CATTAAT-T-GTCGCCTT-TTATA--TTG-AACAAGAAGA----T-TGAATGTTATTTTTG--G-TT-AA-ATAA-TTAAAATTC---AAAAATGATTTT-GCAGGATTGG-AAC----CTCCTCAATTCAAAACACACAAAAAGCATACAGATCTTTTTCATCTTTAACACAAAA-AC--AA-TACACGC-TCACC-AC-TTCGCTACC---G---GATT-A-AT-A-T-A-TT-CAA-AAGT---AAATTCGACTCC--GATAAAAAGGAA---GTAA--TGTTTAAAAGTTTTT---TCTT-T-AAAAGTGCGGGTTTTTT-GTTTA-GAATGG-GTTCAGCTT-TCC--TTTTTA---AAAATATGAAAATAGGATATACAGA-G-GCATTTCGCAA
gi|5 : GAAGAT--GA-ATACAGAAG-G---T--ACACTTATTATTT-AAACC-T-TTTTTCAGAA--TG-GAA---AC-TT-GGCCAACT-AT-ATT-CAA--------A--AC--TCAGTGTTTTAA-TGGGCTATCT-TT-A-CACC----TAT-T---TTCCATCAAAAC-TGCG-TAT-GAGCCATGTTTTTTAA-CA--C-CCATT--TTAATCAA-GCAT-AAGTAATTTAGATACATCTGTATACAGAATTCT-TATTTGGT-GT-A-GT--TGAG-A-T---CCAACTAACTCA-TTTTCAC-AAT--AG-AACCGAATTTTTTGGC--A--TTTTGAAA-TGTTA-AGGAATCCTGCGT-CTCAGAGATAGGGATTTG--CCGCC-TTGG-T-GCGCCCAACTTCTTggccaagtttccgattcgcgtttcggacaacacttggcttgcgaagatgaatacagaaggtacacttattatttaaaccttttttcagaatggaaacttggccaactatattcaaaactcagtgttttaatgggctatctttacacctattttccatcaaaactgcgtatgagccatgttttttaacacccattttaatcaagcataagtaatttagatacatctgtatacagaattcttatttggtgtagttgagatccaactaactcattttcacaatagaaccgaattttttggcattttgaaatgttaaggaatcctgcgtctcagagatagggatttgccgccttggtgcgcccaacttctt
gi|6 : aattctacaaaagcattaattgtcgccttttatattgaacaagaagattgaatgttatttttggttaaataattaaaattcaaaaatgattttgcaggattggaacctcctcaattcaaaacacacaaaaagcatacagatctttttcatctttaacacaaaaacaatacacgctcaccacttcgctaccggattaatatattcaaaagtaaattcgactccgataaaaaggaagtaatgtttaaaagttttttctttaaaagtgcgggttttttgtttagaatgggttcagctttcctttttaaaaatatgaaaataggatatacagaggcatttcgcaaggccaagtttccgattcgcgtttcggacaacacttggcttgcT-CTATT--CACATGAAAATGGAGGTGAGGCATTATTCCCCAT-GTAGAATATGCTGTTTTGGTGT-G-AC-AACCTTTAGACTTCT-A-CAAAGAGTTTGGGCTTACAC-ATGT------CCCGCTACCTACTCTTCCTTTTAA-ATCTGGGAGGGTA-AAAA-GTAATATTGCT-CTATTTGGGGCAGGATAATGAGTTTTTTCTTTCG-AAAC-CGCT-CTG-TATA-TTCTG-AGGGT----TATTCTAACAGTTTTATCA---------------CATAT-----------TATTAG-AG-C---ATT------TTTTCTATTAACTTGAAAT-ACC--GTGC-------------TTATAACATTTTGGACATA-----CGTTGTATTTAGTTATCT-GCCT-TT---AACTTAAGCCATTTTTAACACAAA--ACACTATAGTA-CGAATCACAACGAT--TGGGGAACTGG-CATT---C-T-GTGTTTTG-GTT--ATATTCTAGCCCTATTTTCG-AC-TTG--CAATG-TACA--TC-TGA-T-GAAA--AAAA-TTCT-ACAAAA-TCATTGACGCCGCCG-CTT-T-ATA-ATTG----AAAAAAAA-T-TATGAATGTT-TATTTATTG-TTAAA-TAAA-ATAAA--TT--TAAAAAGGATTTT--CAGGATTCG--ACACA-CTCCC-------------------------CAGATCAG-TACAAC----ACAAAAAA-GA--CA-TACACGC
gi|7 : AAG-TTGTATGTGATACA-GT-TAGT-CACTAAAGTT-ATATCC-T-GAT-AAGAG-AG-T----------------AACA-TTCGAGGTA---CA-TA-C------------CT--TTC-A-ATCTTCGT--GAT---ATCAAAT---ATAATTT-TTATT--CATTTAAA--TGGAGG---------A------AT-GTA-AAT-------TTT--TCT-A-AC-ATC----AGAC--CT-A-CAAAGGG----------TAC-ATGTACATGTTCTGCTAC------TTCCCA--AA-AC-------GATA-GAAA-G--------CT-CTACT-----------AATGAC--TTTTCTTTAG-AC-A-CGCT-CTC-TATA-TTCTG-ATCGCCTGCTATTG-------------G---------------T---T-----------TACT-C-AC-CCTTATTCTACAGTTT-CTCCT-----GCAATGCCGCGTTGCTGGAGCAAAGTATTTA-AACGT-TT--GCTCAACTTACG-T---TTT-GTT--TT-GCCCATT---AACT---GC--TTTTTA-CACAAA--ACAC------A----ATCGTA---ATTCTTGGGAGCTGG-CATT---CT---TGTTGTG-GTT--AA-TTCTAGCCGTATTTTCGAA--TTG--C-ATG-TACG--TC-TGG-T-G-AA--AAAG-CTCT-ACAAAATT-ATTGA--CCGTCACTTG-T-ATA-ATTG-AAAAgtttttttttttttt
gi|8 : AGAAACAGGGCGCA-CAA-----CAA----------TC---CCCCGCTT-AC--TA-TACCT-GGACT-----------------ACAACTGAAAATTAACG-AAAGATTAAA--CCC-AG-TTGTATGTGATACA-GT-CAGT-CACTAAAGTT-ATATCC-TAGAC-AAGAG-CG-TGTGT-TTGATGACA-AAGTA-TTCGAGGTAATATA-TA-TGAGGTATTTGGTCA--TTC-A-ATCTTCGT--GA---TATGAAAT---ATAATTT-TTATT--CACTTGAA--TGGAGG---------A------AT-GTAG-AT-------TTT--TGT-G-AC-AAC----AGAC--CT-G-CAAAGAG----------CAC-ATGT------CCCGCTAC------TTCCCG--AA-AT-------GATA-GAAA-G--------CT-CTACTA----------AATGA---TTTTCTTTCG-AA-C-CGCT-CTG-TATA-TTCTG-A--------TATTC-------------A---------------
gi|9 : aAA--G-GTAA----TACCAATC---CCCCGCTT-GC--TA-TACCT-GGACTTTTA-AAAAGG--AACGACAACTG-AAATTAACGAAAAGAT--AA--CCCAAGTTTGTATGTGATACA-GT-CAGT-CACTAAAGTT-ATATCC-T-GAC-AAGAG-CG-TGTGT-TTGATGACA-AAGTA-TTCGAGGTAT-ATATTA-TGAGGTATTT-GTCA--TTC-A-ATCTTCGT--GA---TATG-AAT---ATAATTT-TTA-T--CACTTGAA--TGGAGG---------A------AT-GTAG-AT-------TTT--TGT-G-AC-AAC----AGAC--CT-G-CAAAGAG----------CAC-ATGT------CCCGCTAC------TTCCCG--AA-AT-------GATA-GAAA-acagttatcacatattatttg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AGCCAAGTGTCCGATTCGCTTAGCTTGTCGAAGTCGACATTGGCTTGCGAAGATGCCAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 1111 4444444444 111 2222 11 1111111 1 1 222 1111 2222 2222222222222222 2222222222 1111 2222222222 111111 111111 1111111 22222222 33333333333 111 33333333 555555555555555555555555555555555555555555555 111 111111 1 11111 222 66666666666666666666666666666666666666 111 11 1 111 111 11 22222222222 11 111 111111 1111111 111 11 111 11 1111 111 11 111 6666666666666666666666666 1111 1111 2 1 3333333 11 111 222222222 11 111 1 11111 111 1111 2222222222 1 11 111 555555555555555 1 1111 111 1 222222222222222222 222222222 111 11 11 1 1 111 111111 1111 11
lowQualScore : 1 6 0000 7777777777 000 5 66 5 5 5 9999 00 1 0 8888888 3 5 55 5 5 5 5 5 5 5 5 0 5 0 55 0 333 5 5 5 66 0000 66 5555 888 5 66 0 66 7777777777777777 5 5555555555 66 5 5 5 0000 66 5 5 1111111111 5 444444 444444 66 5 6666666 5 5 00000000 5 88888888888 555 0 5 5 5 5 5 5 5 22222222 333333333333333333333333333333333333333333333 777 6 111 999999 3 66666 6 222 55555555555555555555555555555555555555 1 000 44 77 5 1 777 000 77 777 33 11111111111 5 0 33 666 5 000 999999 5 9999999 0 666 99 6 6 99 6 6 6 6 99 5 55 99 333 22 5 77 5 00 1 888 7 3 1111 6 6 3 666 6 44 000 6666666666666666666666666 1111 4444 6 6 99 6 0 8 8 8 0 3333333 0 88 8 8 8 8 8 66 0 444 0 8 666666666 3 0 0 11 444 8 8 8 5 8 8 0 8 33333 222 5555 7 7 6 6 1111111111 0 0 3 8 6 5 33 5 555 5 5 5 0 3 444444444444444 9 5 66 5 5 5 5 2222 77 000 1 1 6 88 555555555555555555 88 8 66 999999999 6 3 222 8 8 8 11 8 8 11 5 0 8 111 8 0 666666 6 5555 00 2 6 6 6 6 6
lowQualScore : . . .... .......... ... . .. . . . .... .. . . ....... . . .. . . . . . . . . . . . .. . ... . . . .. .... .. .... ... . .. . .. ................ . .......... .. . . . .... .. . . .......... . ...... ...... .. . ....... . . ........ . ........... ... . . . . . . . . ........ ............................................. ... . ... ...... . ..... . ... ...................................... . ... .. .. . . ... ... .. ... .. ........... . . .. ... . ... ...... . ....... . ... .. . . .. . . . . .. . .. .. ... .. . .. . .. . ... . . .... . . . ... . .. ... ......................... .... .... . . .. . . . . . . ....... . .. . . . . . .. . ... . . ......... . . . .. ... . . . . . . . . ..... ... .... . . . . .......... . . . . . . .. . ... . . . . . ............... . . .. . . . . .... .. ... . . . .. .................. .. . .. ......... . . ... . . . .. . . .. . . . ... . . ...... . .... .. . . . . . .
lowQualScore : 0 7 7777 6666666666 000 0 99 0 0 0 8888 00 4 7 0000000 1 0 66 0 0 0 0 0 0 0 0 0 0 1 11 0 999 0 0 0 99 4444 99 6666 888 0 99 2 99 2222222222222222 0 9999999999 99 0 0 0 6666 99 0 0 9999999999 0 444444 444444 99 0 2222222 0 0 77777777 7 66666666666 777 1 7 7 7 7 7 7 7 99999999 666666666666666666666666666666666666666666666 555 7 777 222222 3 77777 7 777 77777777777777777777777777777777777777 4 000 11 99 7 4 999 000 99 333 66 99999999999 7 7 66 777 7 000 777777 7 7777777 7 333 22 7 7 22 7 7 7 7 22 7 99 99 000 44 7 44 7 77 3 333 3 2 8888 7 7 2 555 7 00 333 7777777777777777777777777 8888 2222 7 7 22 7 0 0 0 0 6 0000000 8 88 0 0 0 0 0 88 8 222 8 0 000000000 2 8 8 00 000 0 0 0 4 0 0 8 0 22222 000 0000 3 3 7 7 5555555555 8 6 8 0 7 7 66 7 777 7 7 7 1 6 333333333333333 0 7 44 7 7 7 7 1111 44 000 4 4 7 88 666666666666666666 88 0 44 888888888 0 8 222 0 0 0 00 0 0 44 8 6 0 888 0 8 888888 0 0000 33 5 7 7 7 7 7
consensus : AGAAACAGGGCGCA-CAA--G-GTAA----CA----TC---CCCCGCTT-GC--TA-TACCT-GGACTTTTA-AAAAGGA-AACGACAACTGAAAATTAACG-AAAGAT--AA--CCCAAG-TTGTATGTGATACA-GT-CAGT-CACTAAAGTT-ATATCC-T-GAC-AAGAG-CG-TGTGT-TTGATGACA-AAGTA-TTCGAGGTA--ATA-TA-TGAGGTATTT-GTCA--TTC-A-ATCTTCGT--GAT--TATGAAAT---ATAATTT-TTATT--CACTTGAA--TGGAGG---------A------AT-GTAGAAT-------TTT--TGT-G-AC-AAC----AGAC--CT-A-CAAAGAG----------CAC-ATGT------CCCGCTAC------TTCCCG--AA-AT-------GATA-GAAA-G--------CT-CTACT-----------AATGA---TTTTCTTTCG-AA-C-CGCT-CTG-TATA-TTCTG-A--------TATTC-------------A---------------C---T-----------TATT-G-AG-C---ATT------TTT-CTACT-----GCAAT-CCCCGGTGC-------------TTA-AAC---TT--AC--------CGTT---TTT-GTT--TT-GCCC-TT---AACT---GC--TTTTTA-CACAAA--ACAC------A-CACATCACA-CGAT--TGGGGAACTGG-CATT---CTT-GTGTTTTG-GTT--AT-NTCTAGCCCTATTTTCGAAC-TTG--C-ATG-TACA--TC-TGA-T-G-AA--AAAA-TTCTAACAAAATTCATTGAC-CCGCCGCCTT-T-ATA-ATTG-AAAAAAAAAAA-T-TATGAATGTTATTTTTATTG-TT-AA-TAAA-ATAAAATTT--TAAAAAGGATTTT-GCAGGATTCG-AACACACCTCCT-------------------------CAGATCAGTTACAAC----ACACAAAA-AA--CA-TACACGCCTAACC-AC-TTCG-CTACCC-CG--TGATTTA-AT-AGT-A-TT-CGA-AGGT-TTAAATTTGACTTC--GATAAAA-GGAA---GTAAA-TGCCTAAAG--TTTT---TCTT-T-AAAAA-GTGTGTTTTTT-GTATA-TAATGG-GTCCAG-TC-TCCATTTTTTT---AAAACATGAAAATAGGATATACAGA-G-G---TTCACAACTATCATTTTAAACC-T-TCTTT-AGAA--TG-GAG---AC-TT-GACCCACTCAT-ATTTCAA---T---CA--A---TCAATGTTTTAA-TGG-CTAT-T-TT-A-CACC----TAT-T---TTTCATCGAAAC-TGCG-TAT-GAGCTATGTTTT--AA-CA--C-CCATT-ATTAATCAA-ACCTCAATTAATTTAGA--------TATAGAGAATCTTATATTTGGT-GT-A-GT--TGAG-A-TCAACCGACTAACTCATTTTTCAT-AAT--AG-AACCGAATTTTTTGTC--A--TTTTGAAATTTTTA-AGATATCCTGTGTCCTCAGAGCGGGGGATTTGCCCCGCC-TT-G-T-GCGCCCAGATTCTT
Reference ( family-2345 ) : AGAAACAGGGCGCA-CAA--G-GTAA----CA----TC---CCCCGCTT-GC--TA-TACCT-GGACTTTTA-AAAAGGA-AACGACAACTGAAAATTAACG-AAAGAT--AA--CCCAAG-TTGTATGTGATACA-GT-CAGT-CACTAAAGTT-ATATCC-T-GAC-AAGAG-CG-TGTGT-TTGATGACA-AAGTA-TTCGAGGTA--ATA-TA-TGAGGTATTT-GTCA--TTC-A-ATCTTCGT--GAT--TATGAAAT---ATAATTT-TTATT--CACTTGAA--TGGAGG---------A------AT-GTAGAAT-------TTT--TGT-G-AC-AAC----AGAC--CT-A-CAAAGAG----------CAC-ATGT------CCCGCTAC------TTCCCG--AA-AT-------GATA-GAAA-G--------CT-CTACT-----------AATGA---TTTTCTTTCG-AA-C-CGCT-CTG-TATA-TTCTG-A--------TATTC-------------A---------------C---T-----------TATT-G-AG-C---ATT------TTT-CTACT-----GCAAT-CCCCGGTGC-------------TTA-AAC---TT--AC--------CGTT---TTT-GTT--TT-GCCC-TT---AACT---GC--TTTTTA-CACAAA--ACAC------A-CACATCACA-CGAT--TGGGGAACTGG-CATT---CTT-GTGTTTTG-GTT--AT-NTCTAGCCCTATTTTCGAAC-TTG--C-ATG-TACA--TC-TGA-T-G-AA--AAAA-TTCTAACAAAATTCATTGAC-CCGCCGCCTT-T-ATA-ATTG-AAAAAAAAAAA-T-TATGAATGTTATTTTTATTG-TT-AA-TAAA-ATAAAATTT--TAAAAAGGATTTT-GCAGGATTCG-AACACACCTCCT-------------------------CAGATCAGTTACAAC----ACACAAAA-AA--CA-TACACGCCTAACC-AC-TTCG-CTACCC-CG--TGATTTA-AT-AGT-A-TT-CGA-AGGT-TTAAATTTGACTTC--GATAAAA-GGAA---GTAAA-TGCCTAAAG--TTTT---TCTT-T-AAAAA-GTGTGTTTTTT-GTATA-TAATGG-GTCCAG-TC-TCCATTTTTTT---AAAACATGAAAATAGGATATACAGA-G-G---TTCACAACTATCATTTTAAACC-T-TCTTT-AGAA--TG-GAG---AC-TT-GACCCACTCAT-ATTTCAA---T---CA--A---TCAATGTTTTAA-TGG-CTAT-T-TT-A-CACC----TAT-T---TTTCATCGAAAC-TGCG-TAT-GAGCTATGTTTT--AA-CA--C-CCATT-ATTAATCAA-ACCTCAATTAATTTAGA--------TATAGAGAATCTTATATTTGGT-GT-A-GT--TGAG-A-TCAACCGACTAACTCATTTTTCAT-AAT--AG-AACCGAATTTTTTGTC--A--TTTTGAAATTTTTA-AGATATCCTGTGTCCTCAGAGCGGGGGATTTGCCCCGCC-TT-G-T-GCGCCCAGATTCTT
gi|1 : AGAAACAGGGCGCA-CAA--G-GTAA-----A----TC---CCCCGCTTTGC--TA-TACCT-GGACTTTTACAAAAGGAGAACGACAACTGAAAATTAACG-AAAGAT--AA--CCCAAG-TTGTATGTGATACACGT-CAGT--ACTAAAGTT-ATATCC-T-GAC-AAGAG-CGGTGTGT-TTGATGACA-AAGTA-TTCAAAGTA--ATA-T--TGAGGTATTT-GTCAAATTCTA-ATCTTCGT--GAT--TATGAAAT---ATAATTT-TTATT--CACTTGAA--TGGAGG---------A-------T-GTAGAAT-------TTT--TGT-G-AC-AAC----AGAC---T-A-CAAAGAG----------CAC-ATGT------CCCGCTAC------TTTCCG--AA-AT-------GATA-GAAA-G--------CT--TACT-----------AATGA---TTTCTTTTCG-AA-CTCGCT-CTG-TATA-TTCTG-A--------T-TTC-------------A-------------------T-----------TATT-G-AG-C---ATT------TT--CTACT-----GCAAT-CCCCGATGC-------------TTA-AAC---TT--AC--------CGTT---TTT-GTT--TT-GCCT-TT---AACT---GC--TTTTTA-CACAAACTACAC------A-CACATCCTA-CGAT--TGGGGAACTCG-CATA---CTTCATGTGTTGCGTT--AT-TGTTAGCCCTATTTTCGAACCTTG--C-ATG-TACACATCATGA-TTG-AA--AACACTTCTAACAAAATTCATTGAC-CCGCCGCCTT-T-ATA-ATTG-AAAAAAAAAAA-T-TATGAATGT-ATTCTTATTG-TT-AA-TAAA-ATAAAATTTCTTAAAAAGGATTTT-GCAGGATTCG-AACACACCTCCT-------------------------CAGAT-AGTTACAAG----ACACAAAA-AA--CAGTACATGCCTAACCCAC-TTCG-CTACCCGCGCTTGATTTA-AT-AGT-ACTT-CGG-CGGTATTAATTCTGACTTC---ATAAAA-GGAA---GTAGAGTGCCTAA-G--TTTTCTCTCTTCT-AAAAA-GTG-GTTTTTT-GTATA-TA-TGGAGTCCA--TC-TCCATTTTTTT---GAAACATGAAA-T-GGATTAACAGA-G-G---TTTACAACTATCATTTTAAACC-T-TCTTT-AGAA--TG-GAGG--AC-TT-GACCCACTCATCATTTCAAC--T---CA--A---TCAATGTTTTAACTGG-CTAT-T-TT-A-CACC----TAT-T---TTTCATCAAAACTTGTGCTGT-GAGCT-TG-TTT--AA-CA--C-CCATT-ATTAATCAA-ACCTCAATTAATTTAGA--------TATAGAAAATCTTATATTTGGT-GT-AGGTCATGAG-A-TCAACCGACTAACTCATTTTTCAT-AAT--AGTAACCGATTTTTGTGTCTTA--TTTCGAAATTTTTA-AGATACCCTGTGTCCTCAGAGCGGGGGATTTGCCTCGCC-TT-G-T-GCGCCCAGATTCTT
gi|10 : AGAAACAGGG---A-CAACCGTATAC----CA----AT---CCCCGCTT-ACACTA-AACCT-GGACTTTTA-AAAAGG--ACCGA-AACTGAAAATGAAC------AT--GA---CCAAG-TTGTATGT--TA-A-GTCCAGT-CACT-AAGTT-ATAT-C-T-G-C--AGAG-CG-TGTGTCTTGACGAC--AAGTA-TTCGAGG-----TA-CA-TGAGGTACTT-GT----TTC---ATCTTT-T--GCTGGTATTAAAT---ATGATT
gi|11 : aaaGC-------------TCA-AA----TT--AC---------GTT---TT--GTT--TT-GCCCATT---AACT---TC--TTTT-----CAAA--ACA-------A-AACAT---A-CGAC--TTGGACGCTTG-CATT---CTT-A-GTTTTG-GTT---T-AGCTAGTTCT
gi|12 : -TTTTC-AGAA--TC-GAG---AC-TT-GACCCATTCAT-A-TTCAAAACT---CAGTA---TTGATCTTT--A-TGG-C-AT-T-TT-A-CACCCAAATAT-TAAGTCTCATTGGAACATGCA-Tcgtaccgactatcagcatagtatat
gi|13 : AGAATCAGAGTGCA-CAA--G-GTAA----TG----CCAAACCCCGCCT-AC-----TACCT-GGACTTTTA-AAAAGG--AACGACAACTGAAAATTAACggacgtgt
gi|15 : aATCCTGTGTC-TCAGAGCGGGGGATTTGCCCTGCA-TT-G-T-GCGCCCAGATTCTT
gi|16 : ---TCAATGTTT-GA-TGG-GTAT-T-TT-A-CACC----TAA-T---TTTCATCGAAAC-TGCta
gi|17 : cTTC-AGAA--TG-GAG---AC-TT-GACCCATTCAT-ATTTAAA---tgtg
gi|2 : tGGGCGCA-CAA--G-GTAAGTACCAA---TC---CCCCGCTT-GC--TAATACCT-GGACTTTTA-AAAAGGA-A-CGACAACTGAAAATTA-C---AATGT--A----------TTGGATGT---ACA-GT-CACTTCACTAAAGTTCATATCCCT-GACCAAGAG-CGCTGTGT-TTGATGACA-AAGTA-TTCGAGGTA--ATA-TACTGAGGTATTG-TTCA--TTC-A--TCTTCGT--GAT---ATGAAAT---ATAATTTCTTATT--CA-TTGAA--TGGAGG---------A------ATTGTAGA-T-------TTT--TGTCG-AC-ATC----AA----CT-A-CAAAG-G----------CA--ATGT------CCCG-TAC------TTCCAG--AA-AT-------GATAAGAAA-G--------CTTCTACTT----------AATGA---TTTTTCTTCG-AA-C-CG-T-CTGGTATA-TTCTGGA--------TATTC-------------AACAAG----------T---TAGTCACATATATATT-G-AGGC---ATT------TTT-CTACT-----GCAAT-CACCG-TGC-------------ATA-A-C---TT--AC---------GTT---T---GTT--TT-GCCC-TTTT-AACT---GC--TTTTTG-CACAAAG-ACAC------A-CA-ATCACA-C-AT--TGGGGA-CTGG-CATT---CTT-GT-TTATG-GTTTAGT-ATCTAGCCCTTATTTCGA-C-TTG--C-ATGCTACA--TC-TGA-T-G-AATAAAAA-TTCTTACAAA--TCATTGAC-C-GCCGGCTTAT-TTA-ATTGGAAAAAAAAAAA-TCTATGAATGTTATTT--ATTG-TA-AA-TAAA-ATAAAATGG--TGAAAGGATTTTT-GCATGATTCGCAACACATC-CTT-------------------------CAGA-CA-TTACAAC-------CAAAACAA--CA-TACACGC-TAACC-AC-TTCG-CTACC------TGATTTG-ATGAGTTA-TT-CGA-AGGT-TTAAATTTGACTT---GATAAAG-GAAA---GTAAA-TGCCTAAAG--TTTT---TCTT-TAAAAAA-GTGTGTTTTTT-ATATA-TAATGG-GTCCAG-TCATCCA--TTTTT---AAAACATGAAAATAGGATATACAGA-GTG---T--AC-ACTATCA--TTAAACCTT-TCTTT-AGAA--TG-GAGTTTTC-TT-GACCCACTCAT-ATTCAAA---A---CT--A---ACAATG-TTTAA-TGG-CTAT-TGTT-A--ACC----TATCT---TTTCATCAAAAC-TGCG-TATCGAGCT--------------------ATT-ATTAATCAA-ACCTCAATTAATTTAGA--------TAT-GAGAATCTTA-ATTTGGT-GT-A-GT--TGAG-ATTCATCCGACT-ACGCA-TTTTCAT-AATAGAG-AAACGAA-TTTTTGTC--ATTTTTTGAAAATTTTAGAGATATCCTGTGTCTCCAGAGCGGAGGTATTGCCCCGCCTTT-GTT-GCGCCAGGATTC
gi|3 : acagcGAAACAGG-CGCAGCAA--G-GTAATCACCA----TC---CCCCGGCT-GC--TA-TACCTTGGACTTTCA-AAAAGGA-A-CGACAACTGAAAATTAACG-A-------------------TGTATGTGATACA-GT-CAGT-CACTAA-GTT-AT--CC-T-GAC-AAGAGGCG-TGT-T-TTGATGACATACGTAATTCGAG-TAT-ATA-TA-TGAGGTATTT-GTCG--ATC-A--TCT-CGT--GAT---ATGAAAT---A-AATTT-TT-TT--C-TTTGAA--TGGAGG---------A------AT-GTAG----------TTT--TGT-GGAC-AAC----AGAC--CT-AACAAAGAG----------CAC-ATAT------CCCGCTAC------T-CCCG--AA-AT-------GATA-GAAA-G--------CT-CTACT-----------AATGA---TTTTCTGTCGGAA-C-CGCT-CTA-TTTAATTCTG-A--------TATTCCAACATTTAC---A---------------CATAT-----------TATT-G-AG-C---ATT------TTTTCTACT-----GCAAT-CTC--GTGC-------------TTA-A-----CT--AA--------CGTT---TT--GTT--T--GCCC-TTGTAAACT---GC--TTTT-A-CACAAA--ACAC------AACA-ATCACA-CGAT--TGGG-AACTGG-CATTGACCTT-GT---TTG-GTT--AT---CTAGCC-TATTTTCGA-C-TT---C-ATG-TACA--TC-TGAAT-G-AA--AAAA-TTCTAGCAAAAT-CATTGAC-C-GCCGC-TT-T-ATATATTG-AAAAAAAAAAAAT-TATGGATGT-ATTGT-ATTGGTT-AAATAAACATAAAATTT---AAAAAGGATTTTTGC-GGAT-CG-AACACACT--CT-------------------------CAGAT-AGT-ACAAC----ATAAAAAA-AAAACA-TACACGC-TAACC-AC-TTGGGCT-CCA-CA--TAATTTT--T-AGT-A-TT-CGA-AGGT-TTAAATTTGACTTCATGA-AAAA-GGAAACAGTAAAATGC--AAAG--TTTT---TCTT-T-AAAAA-GTGTGTTTTTTTGTATACTAATGG--TCCAA-TC-TC-ATTCTTTTTAAAAAACATGAAA-TAGGATATACAGA-G-G---TT-ACA-CTA-CATTTCAACCT-T-TCTTT-AAAAC-TG-GAG---AC-TT-GACCAAATCA--ACTTCAA---TATTCA--AAACTCAATGTTT-AA-TGA--TAT-T-TTTA-CACC-----AT-T---TTTCATCAAAAC-TGCG-TAT-GAGCTATGTCTT--AAACGAGC-CCATT-ATTATACAA-ACCTCAAT-AATTTAGA--------TATAGAATCTCTAAT-TTTGGT-GT-A-GT--TGAG-A-TCAACCGACT-ACTCATTTTTTATAAAT--AG-ATCCGAATTTTTTGTC--A---TTTGAAATTT----AGATATCCTGTGTC--CAGA-C-GGGGATTTGCCCCGCC-TT-G-T-GCGCCCAGAGTCT
gi|4 : CGCTT-GC--TA-TACCT-G-ACTTTTA-AAAAGGA---CGACAACTGAAAATTAACG-AAAGAT--AAAACCCAAT-TTGT-TTTG-TACA-GT-CAGT-CAC-AAAGTT-ATATCC-T-GAC-AA-AG-CG-TGTGT-T-GATGACA-AAGTAGTTCGAGGTATAATA-TA-TGAGGTGTTT-GTCA--TTC-AGATCTCCTTCTGAT---ATGAAATTACATAATTT-TTATTTTCACTTGAG--TGGAGG---------G------AT-GTAGA-T-------TTT--TGT-G-ACGAAC----AGAC--CTTA-CAA-GAG----------CACCATGT------CCCAGCAC------TTCCCG--AATAT-------GATA-GAAACG--------CT-CT-CT-----------AATGA---TTT-CTTTCG-AA-C-CGCTTCTG-TATT-TGCTG-A--------TATTC-------------AACAGTTGTACAACATC---A-----------TTTT-GTAG-C---TCT------TTT-CTACT-----GCAAT-TCCC--TGC-------------TTA-A-C---TA--A------------T---TTT-GTT--TTTGCCC-AT---AACT---GC--TTTTTA-CACAA-----AC------A-CACATCACA-CGATA-TGGG--ACTGGCCATT---C---GT-TTTTG-GTT--CT-ATTTAGCCCTATTTTT-ACC-TTGTAC-ATG-TACA--TC-TGA-T-G--A--AAAA-TTCT-ACAAAATTCATTGAC-GC-CCGCTTT-T-----ATTG----AACAAAAA-T-TATGAATGTTA--TTTATTG-------TAAC-ATAAAA-TT--TAAAAAGGATTCT-GCAGG-TTCG--ACACACTCCGT-------------------------CAGATCAG-TACAAC----ACA-ATCA-AA--CA-TACACG-CTAACC-ACATTCG-CT-TAC-CG--TGACTTATAT-AGT-A-TTGCGGTAGGTCTTAAA-TTGACTTC--AATTACC-GCAA----------GCCT-AAG--TTTT---TATT-T-AAAAG-GTG---TTTTT-GTATA-TAATGG-GTCCAG--C-TCCAT--------------AT----ATAGTATATTCAGA-G-G---TTC---ACTATCA-TTTAAACT-TCTCTTT-AGAAGGTGAGAG---ACATTGGACCCACTCAT-ATTGCAA--------A--AC--TCAATGTTT--A-TGG-CTAT-T-TT-AGCA-C----TA--T---TTTCACAAAAGC-TGCG-TA--GAGTTATG-TTT--AA-CA--CACCATTAATTAATCAACACCTCAA-TAATGTAGG---------ATTAAGAATC-TA-ATTTGGTGGTAA-GT--TGAGAA-TC--CCGACATACTCATTTTTCAT-AAT---G-GACCGAATTTTTTGTC--G--TTTTGAAATTTT---AGATATC---TGTTCTCAGAGCGAGGGATTTG-CCCG-C-TT-G-TAGCGCC
gi|5 : AA-TTCTA-CAAAAG-CATTAAT-T-GTCGCCTT-TTATA--TTG-AACAAGAAGA----T-TGAATGTTATTTTTG--G-TT-AA-ATAA-TTAAAATTC---AAAAATGATTTT-GCAGGATTGG-AAC----CTCCTCAATTCAAAACACACAAAAAGCATACAGATCTTTTTCATCTTTAACACAAAA-AC--AA-TACACGC-TCACC-AC-TTCG-CTACC---G---GATT-A-AT-A-T-A-TT-CAA-AAGT---AAATTCGACTCC--GATAAAAAGGAA---GTAA--TGTTTAAAAGTTTTT---TCTT-T-AAAAGTGCGGGTTTTTT-GTTTA-GAATGG-GTTCAGCTT-TCC--TTTTTA---AAAATATGAAAATAGGATATACAGA-G-GCATTTCGCAA
gi|5 : GAAGAT--GA-ATACAGAAG-G---T--ACACTTATTATTT-AAACC-T-TTTTTCAGAA--TG-GAA---AC-TT-GGCCAACT-AT-ATT-CAA--------A--AC--TCAGTGTTTTAA-TGGGCTATCT-TT-A-CACC----TAT-T---TTCCATCAAAAC-TGCG-TAT-GAGCCATGTTTTTTAA-CA--C-CCATT--TTAATCAA-GCAT-AAGTAATTTAGATACATCTGTATACAGAATTCT-TATTTGGT-GT-A-GT--TGAG-A-T---CCAACTAACTCA-TTTTCAC-AAT--AG-AACCGAATTTTTTGGC--A--TTTTGAAA-TGTTA-AGGAATCCTGCGT-CTCAGAGATAGGGATTTG--CCGCC-TTGG-T-GCGCCCAACTTCTTggccaagtttccgattcgcgtttcggacaacacttggcttgcgaagatgaatacagaaggtacacttattatttaaaccttttttcagaatggaaacttggccaactatattcaaaactcagtgttttaatgggctatctttacacctattttccatcaaaactgcgtatgagccatgttttttaacacccattttaatcaagcataagtaatttagatacatctgtatacagaattcttatttggtgtagttgagatccaactaactcattttcacaatagaaccgaattttttggcattttgaaatgttaaggaatcctgcgtctcagagatagggatttgccgccttggtgcgcccaacttctt
gi|6 : aattctacaaaagcattaattgtcgccttttatattgaacaagaagattgaatgttatttttggttaaataattaaaattcaaaaatgattttgcaggattggaacctcctcaattcaaaacacacaaaaagcatacagatctttttcatctttaacacaaaaacaatacacgctcaccacttcgctaccggattaatatattcaaaagtaaattcgactccgataaaaaggaagtaatgtttaaaagttttttctttaaaagtgcgggttttttgtttagaatgggttcagctttcctttttaaaaatatgaaaataggatatacagaggcatttcgcaaggccaagtttccgattcgcgtttcggacaacacttggcttgcT-CTATT--CACATGAAAATGGAGGTGAGGCATTATTCCCCAT-GTAGAATATGCTGTTTTGGTGT-G-AC-AACCTTTAGACTTCT-A-CAAAGAGTTTGGGCTTACAC-ATGT------CCCGCTACCTACTCTTCCTTTTAA-ATCTGGGAGGGTA-AAAA-GTAATATTGCT-CTATTTGGGGCAGGATAATGAGTTTTTTCTTTCG-AAAC-CGCT-CTG-TATA-TTCTG-AGGGT----TATTCTAACAGTTTTATCA---------------CATAT-----------TATTAG-AG-C---ATT------TTTTCTATTAACTTGAAAT-ACC--GTGC-------------TTATAACATTTTGGACATA-----CGTTGTATTTAGTTATCT-GCCT-TT---AACTTAAGCCATTTTTAACACAAA--ACACTATAGTA-CGAATCACAACGAT--TGGGGAACTGG-CATT---C-T-GTGTTTTG-GTT--ATATTCTAGCCCTATTTTCG-AC-TTG--CAATG-TACA--TC-TGA-T-GAAA--AAAA-TTCT-ACAAAA-TCATTGACGCCGCCG-CTT-T-ATA-ATTG----AAAAAAAA-T-TATGAATGTT-TATTTATTG-TTAAA-TAAA-ATAAA--TT--TAAAAAGGATTTT--CAGGATTCG--ACACA-CTCCC-------------------------CAGATCAG-TACAAC----ACAAAAAA-GA--CA-TACACGC
gi|7 : AAG-TTGTATGTGATACA-GT-TAGT-CACTAAAGTT-ATATCC-T-GAT-AAGAG-AG-T----------------AACA-TTCGAGGTA---CA-TA-C------------CT--TTC-A-ATCTTCGT--GAT---ATCAAAT---ATAATTT-TTATT--CATTTAAA--TGGAGG---------A------AT-GTA-AAT-------TTT--TCT-A-AC-ATC----AGAC--CT-A-CAAAGGG----------TAC-ATGTACATGTTCTGCTAC------TTCCCA--AA-AC-------GATA-GAAA-G--------CT-CTACT-----------AATGAC--TTTTCTTTAG-AC-A-CGCT-CTC-TATA-TTCTG-ATCGCCTGCTATTG-------------G---------------T---T-----------TACT-C-AC-CCTTATTCTACAGTTT-CTCCT-----GCAATGCCGCGTTGCTGGAGCAAAGTATTTA-AACGT-TT--GCTCAACTTACG-T---TTT-GTT--TT-GCCCATT---AACT---GC--TTTTTA-CACAAA--ACAC------A----ATCGTA---ATTCTTGGGAGCTGG-CATT---CT---TGTTGTG-GTT--AA-TTCTAGCCGTATTTTCGAA--TTG--C-ATG-TACG--TC-TGG-T-G-AA--AAAG-CTCT-ACAAAATT-ATTGA--CCGTCACTTG-T-ATA-ATTG-AAAAgtttttttttttttt
gi|8 : AGAAACAGGGCGCA-CAA-----CAA----------TC---CCCCGCTT-AC--TA-TACCT-GGACT-----------------ACAACTGAAAATTAACG-AAAGATTAAA--CCC-AG-TTGTATGTGATACA-GT-CAGT-CACTAAAGTT-ATATCC-TAGAC-AAGAG-CG-TGTGT-TTGATGACA-AAGTA-TTCGAGGTAATATA-TA-TGAGGTATTTGGTCA--TTC-A-ATCTTCGT--GA---TATGAAAT---ATAATTT-TTATT--CACTTGAA--TGGAGG---------A------AT-GTAG-AT-------TTT--TGT-G-AC-AAC----AGAC--CT-G-CAAAGAG----------CAC-ATGT------CCCGCTAC------TTCCCG--AA-AT-------GATA-GAAA-G--------CT-CTACTA----------AATGA---TTTTCTTTCG-AA-C-CGCT-CTG-TATA-TTCTG-A--------TATTC-------------A---------------
gi|9 : aAA--G-GTAA----TACCAATC---CCCCGCTT-GC--TA-TACCT-GGACTTTTA-AAAAGG--AACGACAACTG-AAATTAACGAAAAGAT--AA--CCCAAGTTTGTATGTGATACA-GT-CAGT-CACTAAAGTT-ATATCC-T-GAC-AAGAG-CG-TGTGT-TTGATGACA-AAGTA-TTCGAGGTAT-ATATTA-TGAGGTATTT-GTCA--TTC-A-ATCTTCGT--GA---TATG-AAT---ATAATTT-TTA-T--CACTTGAA--TGGAGG---------A------AT-GTAG-AT-------TTT--TGT-G-AC-AAC----AGAC--CT-G-CAAAGAG----------CAC-ATGT------CCCGCTAC------TTCCCG--AA-AT-------GATA-GAAA-acagttatcacatattatttg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AGCCAAGTGTCCGATTCGCTTAGCTTGTCGAAGTCGACATTGGCTTGCGAAGATGCCAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 1111 4444444444 111 2222 11 1111111 1 1 222 1111 2222 2222222222222222 2222222222 1111 2222222222 111111 111111 1111111 22222222 33333333333 111 33333333 555555555555555555555555555555555555555555555 111 111111 1 11111 222 66666666666666666666666666666666666666 111 11 1 111 111 11 22222222222 11 111 111111 1111111 111 11 111 11 1111 111 11 111 6666666666666666666666666 1111 1111 2 1 3333333 11 111 222222222 11 111 1 11111 111 1111 2222222222 1 11 111 555555555555555 1 1111 111 1 222222222222222222 222222222 111 11 11 1 1 111 111111 1111 11
lowQualScore : 1 6 0000 7777777777 000 5 66 5 5 5 9999 00 1 0 8888888 3 5 55 5 5 5 5 5 5 5 5 0 5 0 55 0 333 5 5 5 66 0000 66 5555 888 5 66 0 66 7777777777777777 5 5555555555 66 5 5 5 0000 66 5 5 1111111111 5 444444 444444 66 5 6666666 5 5 00000000 5 88888888888 555 0 5 5 5 5 5 5 5 22222222 333333333333333333333333333333333333333333333 777 6 111 999999 3 66666 6 222 55555555555555555555555555555555555555 1 000 44 77 5 1 777 000 77 777 33 11111111111 5 0 33 666 5 000 999999 5 9999999 0 666 99 6 6 99 6 6 6 6 99 5 55 99 333 22 5 77 5 00 1 888 7 3 1111 6 6 3 666 6 44 000 6666666666666666666666666 1111 4444 6 6 99 6 0 8 8 8 0 3333333 0 88 8 8 8 8 8 66 0 444 0 8 666666666 3 0 0 11 444 8 8 8 5 8 8 0 8 33333 222 5555 7 7 6 6 1111111111 0 0 3 8 6 5 33 5 555 5 5 5 0 3 444444444444444 9 5 66 5 5 5 5 2222 77 000 1 1 6 88 555555555555555555 88 8 66 999999999 6 3 222 8 8 8 11 8 8 11 5 0 8 111 8 0 666666 6 5555 00 2 6 6 6 6 6
lowQualScore : . . .... .......... ... . .. . . . .... .. . . ....... . . .. . . . . . . . . . . . .. . ... . . . .. .... .. .... ... . .. . .. ................ . .......... .. . . . .... .. . . .......... . ...... ...... .. . ....... . . ........ . ........... ... . . . . . . . . ........ ............................................. ... . ... ...... . ..... . ... ...................................... . ... .. .. . . ... ... .. ... .. ........... . . .. ... . ... ...... . ....... . ... .. . . .. . . . . .. . .. .. ... .. . .. . .. . ... . . .... . . . ... . .. ... ......................... .... .... . . .. . . . . . . ....... . .. . . . . . .. . ... . . ......... . . . .. ... . . . . . . . . ..... ... .... . . . . .......... . . . . . . .. . ... . . . . . ............... . . .. . . . . .... .. ... . . . .. .................. .. . .. ......... . . ... . . . .. . . .. . . . ... . . ...... . .... .. . . . . . .
lowQualScore : 0 7 7777 6666666666 000 0 99 0 0 0 8888 00 4 7 0000000 1 0 66 0 0 0 0 0 0 0 0 0 0 1 11 0 999 0 0 0 99 4444 99 6666 888 0 99 2 99 2222222222222222 0 9999999999 99 0 0 0 6666 99 0 0 9999999999 0 444444 444444 99 0 2222222 0 0 77777777 7 66666666666 777 1 7 7 7 7 7 7 7 99999999 666666666666666666666666666666666666666666666 555 7 777 222222 3 77777 7 777 77777777777777777777777777777777777777 4 000 11 99 7 4 999 000 99 333 66 99999999999 7 7 66 777 7 000 777777 7 7777777 7 333 22 7 7 22 7 7 7 7 22 7 99 99 000 44 7 44 7 77 3 333 3 2 8888 7 7 2 555 7 00 333 7777777777777777777777777 8888 2222 7 7 22 7 0 0 0 0 6 0000000 8 88 0 0 0 0 0 88 8 222 8 0 000000000 2 8 8 00 000 0 0 0 4 0 0 8 0 22222 000 0000 3 3 7 7 5555555555 8 6 8 0 7 7 66 7 777 7 7 7 1 6 333333333333333 0 7 44 7 7 7 7 1111 44 000 4 4 7 88 666666666666666666 88 0 44 888888888 0 8 222 0 0 0 00 0 0 44 8 6 0 888 0 8 888888 0 0000 33 5 7 7 7 7 7
consensus : AGAAACAGGGCGCA-CAA--G-GTAA----CA----TC---CCCCGCTT-GC--TA-TACCT-GGACTTTTA-AAAAGGA-AACGACAACTGAAAATTAACG-AAAGAT--AA--CCCAAG-TTGTATGTGATACA-GT-CAGT-CACTAAAGTT-ATATCC-T-GAC-AAGAG-CG-TGTGT-TTGATGACA-AAGTA-TTCGAGGTA--ATA-TA-TGAGGTATTT-GTCA--TTC-A-ATCTTCGT--GAT--TATGAAAT---ATAATTT-TTATT--CACTTGAA--TGGAGG---------A------AT-GTAGAAT-------TTT--TGT-G-AC-AAC----AGAC--CT-A-CAAAGAG----------CAC-ATGT------CCCGCTAC------TTCCCG--AA-AT-------GATA-GAAA-G--------CT-CTACT-----------AATGA---TTTTCTTTCG-AA-C-CGCT-CTG-TATA-TTCTG-A--------TATTC-------------A---------------C---T-----------TATT-G-AG-C---ATT------TTT-CTACT-----GCAAT-CCCCGGTGC-------------TTA-AAC---TT--AC--------CGTT---TTT-GTT--TT-GCCC-TT---AACT---GC--TTTTTA-CACAAA--ACAC------A-CACATCACA-CGAT--TGGGGAACTGG-CATT---CTT-GTGTTTTG-GTT--AT-NTCTAGCCCTATTTTCGAAC-TTG--C-ATG-TACA--TC-TGA-T-G-AA--AAAA-TTCTAACAAAATTCATTGAC-CCGCCGCCTT-T-ATA-ATTG-AAAAAAAAAAA-T-TATGAATGTTATTTTTATTG-TT-AA-TAAA-ATAAAATTT--TAAAAAGGATTTT-GCAGGATTCG-AACACACCTCCT-------------------------CAGATCAGTTACAAC----ACACAAAA-AA--CA-TACACGCCTAACC-AC-TTCG-CTACCC-CG--TGATTTA-AT-AGT-A-TT-CGA-AGGT-TTAAATTTGACTTC--GATAAAA-GGAA---GTAAA-TGCCTAAAG--TTTT---TCTT-T-AAAAA-GTGTGTTTTTT-GTATA-TAATGG-GTCCAG-TC-TCCATTTTTTT---AAAACATGAAAATAGGATATACAGA-G-G---TTCACAACTATCATTTTAAACC-T-TCTTT-AGAA--TG-GAG---AC-TT-GACCCACTCAT-ATTTCAA---T---CA--A---TCAATGTTTTAA-TGG-CTAT-T-TT-A-CACC----TAT-T---TTTCATCGAAAC-TGCG-TAT-GAGCTATGTTTT--AA-CA--C-CCATT-ATTAATCAA-ACCTCAATTAATTTAGA--------TATAGAGAATCTTATATTTGGT-GT-A-GT--TGAG-A-TCAACCGACTAACTCATTTTTCAT-AAT--AG-AACCGAATTTTTTGTC--A--TTTTGAAATTTTTA-AGATATCCTGTGTCCTCAGAGCGGGGGATTTGCCCCGCC-TT-G-T-GCGCCCAGATTCTT
Reference ( family-2345 ) : AGAAACAGGGCGCA-CAA--G-GTAA----CA----TC---CCCCGCTT-GC--TA-TACCT-GGACTTTTA-AAAAGGA-AACGACAACTGAAAATTAACG-AAAGAT--AA--CCCAAG-TTGTATGTGATACA-GT-CAGT-CACTAAAGTT-ATATCC-T-GAC-AAGAG-CG-TGTGT-TTGATGACA-AAGTA-TTCGAGGTA--ATA-TA-TGAGGTATTT-GTCA--TTC-A-ATCTTCGT--GAT--TATGAAAT---ATAATTT-TTATT--CACTTGAA--TGGAGG---------A------AT-GTAGAAT-------TTT--TGT-G-AC-AAC----AGAC--CT-A-CAAAGAG----------CAC-ATGT------CCCGCTAC------TTCCCG--AA-AT-------GATA-GAAA-G--------CT-CTACT-----------AATGA---TTTTCTTTCG-AA-C-CGCT-CTG-TATA-TTCTG-A--------TATTC-------------A---------------C---T-----------TATT-G-AG-C---ATT------TTT-CTACT-----GCAAT-CCCCGGTGC-------------TTA-AAC---TT--AC--------CGTT---TTT-GTT--TT-GCCC-TT---AACT---GC--TTTTTA-CACAAA--ACAC------A-CACATCACA-CGAT--TGGGGAACTGG-CATT---CTT-GTGTTTTG-GTT--AT-NTCTAGCCCTATTTTCGAAC-TTG--C-ATG-TACA--TC-TGA-T-G-AA--AAAA-TTCTAACAAAATTCATTGAC-CCGCCGCCTT-T-ATA-ATTG-AAAAAAAAAAA-T-TATGAATGTTATTTTTATTG-TT-AA-TAAA-ATAAAATTT--TAAAAAGGATTTT-GCAGGATTCG-AACACACCTCCT-------------------------CAGATCAGTTACAAC----ACACAAAA-AA--CA-TACACGCCTAACC-AC-TTCG-CTACCC-CG--TGATTTA-AT-AGT-A-TT-CGA-AGGT-TTAAATTTGACTTC--GATAAAA-GGAA---GTAAA-TGCCTAAAG--TTTT---TCTT-T-AAAAA-GTGTGTTTTTT-GTATA-TAATGG-GTCCAG-TC-TCCATTTTTTT---AAAACATGAAAATAGGATATACAGA-G-G---TTCACAACTATCATTTTAAACC-T-TCTTT-AGAA--TG-GAG---AC-TT-GACCCACTCAT-ATTTCAA---T---CA--A---TCAATGTTTTAA-TGG-CTAT-T-TT-A-CACC----TAT-T---TTTCATCGAAAC-TGCG-TAT-GAGCTATGTTTT--AA-CA--C-CCATT-ATTAATCAA-ACCTCAATTAATTTAGA--------TATAGAGAATCTTATATTTGGT-GT-A-GT--TGAG-A-TCAACCGACTAACTCATTTTTCAT-AAT--AG-AACCGAATTTTTTGTC--A--TTTTGAAATTTTTA-AGATATCCTGTGTCCTCAGAGCGGGGGATTTGCCCCGCC-TT-G-T-GCGCCCAGATTCTT
gi|1 : AGAAACAGGGCGCA-CAA--G-GTAA-----A----TC---CCCCGCTTTGC--TA-TACCT-GGACTTTTACAAAAGGAGAACGACAACTGAAAATTAACG-AAAGAT--AA--CCCAAG-TTGTATGTGATACACGT-CAGT--ACTAAAGTT-ATATCC-T-GAC-AAGAG-CGGTGTGT-TTGATGACA-AAGTA-TTCAAAGTA--ATA-T--TGAGGTATTT-GTCAAATTCTA-ATCTTCGT--GAT--TATGAAAT---ATAATTT-TTATT--CACTTGAA--TGGAGG---------A-------T-GTAGAAT-------TTT--TGT-G-AC-AAC----AGAC---T-A-CAAAGAG----------CAC-ATGT------CCCGCTAC------TTTCCG--AA-AT-------GATA-GAAA-G--------CT--TACT-----------AATGA---TTTCTTTTCG-AA-CTCGCT-CTG-TATA-TTCTG-A--------T-TTC-------------A-------------------T-----------TATT-G-AG-C---ATT------TT--CTACT-----GCAAT-CCCCGATGC-------------TTA-AAC---TT--AC--------CGTT---TTT-GTT--TT-GCCT-TT---AACT---GC--TTTTTA-CACAAACTACAC------A-CACATCCTA-CGAT--TGGGGAACTCG-CATA---CTTCATGTGTTGCGTT--AT-TGTTAGCCCTATTTTCGAACCTTG--C-ATG-TACACATCATGA-TTG-AA--AACACTTCTAACAAAATTCATTGAC-CCGCCGCCTT-T-ATA-ATTG-AAAAAAAAAAA-T-TATGAATGT-ATTCTTATTG-TT-AA-TAAA-ATAAAATTTCTTAAAAAGGATTTT-GCAGGATTCG-AACACACCTCCT-------------------------CAGAT-AGTTACAAG----ACACAAAA-AA--CAGTACATGCCTAACCCAC-TTCG-CTACCCGCGCTTGATTTA-AT-AGT-ACTT-CGG-CGGTATTAATTCTGACTTC---ATAAAA-GGAA---GTAGAGTGCCTAA-G--TTTTCTCTCTTCT-AAAAA-GTG-GTTTTTT-GTATA-TA-TGGAGTCCA--TC-TCCATTTTTTT---GAAACATGAAA-T-GGATTAACAGA-G-G---TTTACAACTATCATTTTAAACC-T-TCTTT-AGAA--TG-GAGG--AC-TT-GACCCACTCATCATTTCAAC--T---CA--A---TCAATGTTTTAACTGG-CTAT-T-TT-A-CACC----TAT-T---TTTCATCAAAACTTGTGCTGT-GAGCT-TG-TTT--AA-CA--C-CCATT-ATTAATCAA-ACCTCAATTAATTTAGA--------TATAGAAAATCTTATATTTGGT-GT-AGGTCATGAG-A-TCAACCGACTAACTCATTTTTCAT-AAT--AGTAACCGATTTTTGTGTCTTA--TTTCGAAATTTTTA-AGATACCCTGTGTCCTCAGAGCGGGGGATTTGCCTCGCC-TT-G-T-GCGCCCAGATTCTT
gi|10 : AGAAACAGGG---A-CAACCGTATAC----CA----AT---CCCCGCTT-ACACTA-AACCT-GGACTTTTA-AAAAGG--ACCGA-AACTGAAAATGAAC------AT--GA---CCAAG-TTGTATGT--TA-A-GTCCAGT-CACT-AAGTT-ATAT-C-T-G-C--AGAG-CG-TGTGTCTTGACGAC--AAGTA-TTCGAGG-----TA-CA-TGAGGTACTT-GT----TTC---ATCTTT-T--GCTGGTATTAAAT---ATGATT
gi|11 : aaaGC-------------TCA-AA----TT--AC---------GTT---TT--GTT--TT-GCCCATT---AACT---TC--TTTT-----CAAA--ACA-------A-AACAT---A-CGAC--TTGGACGCTTG-CATT---CTT-A-GTTTTG-GTT---T-AGCTAGTTCT
gi|12 : -TTTTC-AGAA--TC-GAG---AC-TT-GACCCATTCAT-A-TTCAAAACT---CAGTA---TTGATCTTT--A-TGG-C-AT-T-TT-A-CACCCAAATAT-TAAGTCTCATTGGAACATGCA-Tcgtaccgactatcagcatagtatat
gi|13 : AGAATCAGAGTGCA-CAA--G-GTAA----TG----CCAAACCCCGCCT-AC-----TACCT-GGACTTTTA-AAAAGG--AACGACAACTGAAAATTAACggacgtgt
gi|15 : aATCCTGTGTC-TCAGAGCGGGGGATTTGCCCTGCA-TT-G-T-GCGCCCAGATTCTT
gi|16 : ---TCAATGTTT-GA-TGG-GTAT-T-TT-A-CACC----TAA-T---TTTCATCGAAAC-TGCta
gi|17 : cTTC-AGAA--TG-GAG---AC-TT-GACCCATTCAT-ATTTAAA---tgtg
gi|2 : tGGGCGCA-CAA--G-GTAAGTACCAA---TC---CCCCGCTT-GC--TAATACCT-GGACTTTTA-AAAAGGA-A-CGACAACTGAAAATTA-C---AATGT--A----------TTGGATGT---ACA-GT-CACTTCACTAAAGTTCATATCCCT-GACCAAGAG-CGCTGTGT-TTGATGACA-AAGTA-TTCGAGGTA--ATA-TACTGAGGTATTG-TTCA--TTC-A--TCTTCGT--GAT---ATGAAAT---ATAATTTCTTATT--CA-TTGAA--TGGAGG---------A------ATTGTAGA-T-------TTT--TGTCG-AC-ATC----AA----CT-A-CAAAG-G----------CA--ATGT------CCCG-TAC------TTCCAG--AA-AT-------GATAAGAAA-G--------CTTCTACTT----------AATGA---TTTTTCTTCG-AA-C-CG-T-CTGGTATA-TTCTGGA--------TATTC-------------AACAAG----------T---TAGTCACATATATATT-G-AGGC---ATT------TTT-CTACT-----GCAAT-CACCG-TGC-------------ATA-A-C---TT--AC---------GTT---T---GTT--TT-GCCC-TTTT-AACT---GC--TTTTTG-CACAAAG-ACAC------A-CA-ATCACA-C-AT--TGGGGA-CTGG-CATT---CTT-GT-TTATG-GTTTAGT-ATCTAGCCCTTATTTCGA-C-TTG--C-ATGCTACA--TC-TGA-T-G-AATAAAAA-TTCTTACAAA--TCATTGAC-C-GCCGGCTTAT-TTA-ATTGGAAAAAAAAAAA-TCTATGAATGTTATTT--ATTG-TA-AA-TAAA-ATAAAATGG--TGAAAGGATTTTT-GCATGATTCGCAACACATC-CTT-------------------------CAGA-CA-TTACAAC-------CAAAACAA--CA-TACACGC-TAACC-AC-TTCG-CTACC------TGATTTG-ATGAGTTA-TT-CGA-AGGT-TTAAATTTGACTT---GATAAAG-GAAA---GTAAA-TGCCTAAAG--TTTT---TCTT-TAAAAAA-GTGTGTTTTTT-ATATA-TAATGG-GTCCAG-TCATCCA--TTTTT---AAAACATGAAAATAGGATATACAGA-GTG---T--AC-ACTATCA--TTAAACCTT-TCTTT-AGAA--TG-GAGTTTTC-TT-GACCCACTCAT-ATTCAAA---A---CT--A---ACAATG-TTTAA-TGG-CTAT-TGTT-A--ACC----TATCT---TTTCATCAAAAC-TGCG-TATCGAGCT--------------------ATT-ATTAATCAA-ACCTCAATTAATTTAGA--------TAT-GAGAATCTTA-ATTTGGT-GT-A-GT--TGAG-ATTCATCCGACT-ACGCA-TTTTCAT-AATAGAG-AAACGAA-TTTTTGTC--ATTTTTTGAAAATTTTAGAGATATCCTGTGTCTCCAGAGCGGAGGTATTGCCCCGCCTTT-GTT-GCGCCAGGATTC
gi|3 : acagcGAAACAGG-CGCAGCAA--G-GTAATCACCA----TC---CCCCGGCT-GC--TA-TACCTTGGACTTTCA-AAAAGGA-A-CGACAACTGAAAATTAACG-A-------------------TGTATGTGATACA-GT-CAGT-CACTAA-GTT-AT--CC-T-GAC-AAGAGGCG-TGT-T-TTGATGACATACGTAATTCGAG-TAT-ATA-TA-TGAGGTATTT-GTCG--ATC-A--TCT-CGT--GAT---ATGAAAT---A-AATTT-TT-TT--C-TTTGAA--TGGAGG---------A------AT-GTAG----------TTT--TGT-GGAC-AAC----AGAC--CT-AACAAAGAG----------CAC-ATAT------CCCGCTAC------T-CCCG--AA-AT-------GATA-GAAA-G--------CT-CTACT-----------AATGA---TTTTCTGTCGGAA-C-CGCT-CTA-TTTAATTCTG-A--------TATTCCAACATTTAC---A---------------CATAT-----------TATT-G-AG-C---ATT------TTTTCTACT-----GCAAT-CTC--GTGC-------------TTA-A-----CT--AA--------CGTT---TT--GTT--T--GCCC-TTGTAAACT---GC--TTTT-A-CACAAA--ACAC------AACA-ATCACA-CGAT--TGGG-AACTGG-CATTGACCTT-GT---TTG-GTT--AT---CTAGCC-TATTTTCGA-C-TT---C-ATG-TACA--TC-TGAAT-G-AA--AAAA-TTCTAGCAAAAT-CATTGAC-C-GCCGC-TT-T-ATATATTG-AAAAAAAAAAAAT-TATGGATGT-ATTGT-ATTGGTT-AAATAAACATAAAATTT---AAAAAGGATTTTTGC-GGAT-CG-AACACACT--CT-------------------------CAGAT-AGT-ACAAC----ATAAAAAA-AAAACA-TACACGC-TAACC-AC-TTGGGCT-CCA-CA--TAATTTT--T-AGT-A-TT-CGA-AGGT-TTAAATTTGACTTCATGA-AAAA-GGAAACAGTAAAATGC--AAAG--TTTT---TCTT-T-AAAAA-GTGTGTTTTTTTGTATACTAATGG--TCCAA-TC-TC-ATTCTTTTTAAAAAACATGAAA-TAGGATATACAGA-G-G---TT-ACA-CTA-CATTTCAACCT-T-TCTTT-AAAAC-TG-GAG---AC-TT-GACCAAATCA--ACTTCAA---TATTCA--AAACTCAATGTTT-AA-TGA--TAT-T-TTTA-CACC-----AT-T---TTTCATCAAAAC-TGCG-TAT-GAGCTATGTCTT--AAACGAGC-CCATT-ATTATACAA-ACCTCAAT-AATTTAGA--------TATAGAATCTCTAAT-TTTGGT-GT-A-GT--TGAG-A-TCAACCGACT-ACTCATTTTTTATAAAT--AG-ATCCGAATTTTTTGTC--A---TTTGAAATTT----AGATATCCTGTGTC--CAGA-C-GGGGATTTGCCCCGCC-TT-G-T-GCGCCCAGAGTCT
gi|4 : CGCTT-GC--TA-TACCT-G-ACTTTTA-AAAAGGA---CGACAACTGAAAATTAACG-AAAGAT--AAAACCCAAT-TTGT-TTTG-TACA-GT-CAGT-CAC-AAAGTT-ATATCC-T-GAC-AA-AG-CG-TGTGT-T-GATGACA-AAGTAGTTCGAGGTATAATA-TA-TGAGGTGTTT-GTCA--TTC-AGATCTCCTTCTGAT---ATGAAATTACATAATTT-TTATTTTCACTTGAG--TGGAGG---------G------AT-GTAGA-T-------TTT--TGT-G-ACGAAC----AGAC--CTTA-CAA-GAG----------CACCATGT------CCCAGCAC------TTCCCG--AATAT-------GATA-GAAACG--------CT-CT-CT-----------AATGA---TTT-CTTTCG-AA-C-CGCTTCTG-TATT-TGCTG-A--------TATTC-------------AACAGTTGTACAACATC---A-----------TTTT-GTAG-C---TCT------TTT-CTACT-----GCAAT-TCCC--TGC-------------TTA-A-C---TA--A------------T---TTT-GTT--TTTGCCC-AT---AACT---GC--TTTTTA-CACAA-----AC------A-CACATCACA-CGATA-TGGG--ACTGGCCATT---C---GT-TTTTG-GTT--CT-ATTTAGCCCTATTTTT-ACC-TTGTAC-ATG-TACA--TC-TGA-T-G--A--AAAA-TTCT-ACAAAATTCATTGAC-GC-CCGCTTT-T-----ATTG----AACAAAAA-T-TATGAATGTTA--TTTATTG-------TAAC-ATAAAA-TT--TAAAAAGGATTCT-GCAGG-TTCG--ACACACTCCGT-------------------------CAGATCAG-TACAAC----ACA-ATCA-AA--CA-TACACG-CTAACC-ACATTCG-CT-TAC-CG--TGACTTATAT-AGT-A-TTGCGGTAGGTCTTAAA-TTGACTTC--AATTACC-GCAA----------GCCT-AAG--TTTT---TATT-T-AAAAG-GTG---TTTTT-GTATA-TAATGG-GTCCAG--C-TCCAT--------------AT----ATAGTATATTCAGA-G-G---TTC---ACTATCA-TTTAAACT-TCTCTTT-AGAAGGTGAGAG---ACATTGGACCCACTCAT-ATTGCAA--------A--AC--TCAATGTTT--A-TGG-CTAT-T-TT-AGCA-C----TA--T---TTTCACAAAAGC-TGCG-TA--GAGTTATG-TTT--AA-CA--CACCATTAATTAATCAACACCTCAA-TAATGTAGG---------ATTAAGAATC-TA-ATTTGGTGGTAA-GT--TGAGAA-TC--CCGACATACTCATTTTTCAT-AAT---G-GACCGAATTTTTTGTC--G--TTTTGAAATTTT---AGATATC---TGTTCTCAGAGCGAGGGATTTG-CCCG-C-TT-G-TAGCGCC
gi|5 : AA-TTCTA-CAAAAG-CATTAAT-T-GTCGCCTT-TTATA--TTG-AACAAGAAGA----T-TGAATGTTATTTTTG--G-TT-AA-ATAA-TTAAAATTC---AAAAATGATTTT-GCAGGATTGG-AAC----CTCCTCAATTCAAAACACACAAAAAGCATACAGATCTTTTTCATCTTTAACACAAAA-AC--AA-TACACGC-TCACC-AC-TTCG-CTACC---G---GATT-A-AT-A-T-A-TT-CAA-AAGT---AAATTCGACTCC--GATAAAAAGGAA---GTAA--TGTTTAAAAGTTTTT---TCTT-T-AAAAGTGCGGGTTTTTT-GTTTA-GAATGG-GTTCAGCTT-TCC--TTTTTA---AAAATATGAAAATAGGATATACAGA-G-GCATTTCGCAA
gi|5 : GAAGAT--GA-ATACAGAAG-G---T--ACACTTATTATTT-AAACC-T-TTTTTCAGAA--TG-GAA---AC-TT-GGCCAACT-AT-ATT-CAA--------A--AC--TCAGTGTTTTAA-TGGGCTATCT-TT-A-CACC----TAT-T---TTCCATCAAAAC-TGCG-TAT-GAGCCATGTTTTTTAA-CA--C-CCATT--TTAATCAA-GCAT-AAGTAATTTAGATACATCTGTATACAGAATTCT-TATTTGGT-GT-A-GT--TGAG-A-T---CCAACTAACTCA-TTTTCAC-AAT--AG-AACCGAATTTTTTGGC--A--TTTTGAAA-TGTTA-AGGAATCCTGCGT-CTCAGAGATAGGGATTTG--CCGCC-TTGG-T-GCGCCCAACTTCTTggccaagtttccgattcgcgtttcggacaacacttggcttgcgaagatgaatacagaaggtacacttattatttaaaccttttttcagaatggaaacttggccaactatattcaaaactcagtgttttaatgggctatctttacacctattttccatcaaaactgcgtatgagccatgttttttaacacccattttaatcaagcataagtaatttagatacatctgtatacagaattcttatttggtgtagttgagatccaactaactcattttcacaatagaaccgaattttttggcattttgaaatgttaaggaatcctgcgtctcagagatagggatttgccgccttggtgcgcccaacttctt
gi|6 : aattctacaaaagcattaattgtcgccttttatattgaacaagaagattgaatgttatttttggttaaataattaaaattcaaaaatgattttgcaggattggaacctcctcaattcaaaacacacaaaaagcatacagatctttttcatctttaacacaaaaacaatacacgctcaccacttcgctaccggattaatatattcaaaagtaaattcgactccgataaaaaggaagtaatgtttaaaagttttttctttaaaagtgcgggttttttgtttagaatgggttcagctttcctttttaaaaatatgaaaataggatatacagaggcatttcgcaaggccaagtttccgattcgcgtttcggacaacacttggcttgcT-CTATT--CACATGAAAATGGAGGTGAGGCATTATTCCCCAT-GTAGAATATGCTGTTTTGGTGT-G-AC-AACCTTTAGACTTCT-A-CAAAGAGTTTGGGCTTACAC-ATGT------CCCGCTACCTACTCTTCCTTTTAA-ATCTGGGAGGGTA-AAAA-GTAATATTGCT-CTATTTGGGGCAGGATAATGAGTTTTTTCTTTCG-AAAC-CGCT-CTG-TATA-TTCTG-AGGGT----TATTCTAACAGTTTTATCA---------------CATAT-----------TATTAG-AG-C---ATT------TTTTCTATTAACTTGAAAT-ACC--GTGC-------------TTATAACATTTTGGACATA-----CGTTGTATTTAGTTATCT-GCCT-TT---AACTTAAGCCATTTTTAACACAAA--ACACTATAGTA-CGAATCACAACGAT--TGGGGAACTGG-CATT---C-T-GTGTTTTG-GTT--ATATTCTAGCCCTATTTTCG-AC-TTG--CAATG-TACA--TC-TGA-T-GAAA--AAAA-TTCT-ACAAAA-TCATTGACGCCGCCG-CTT-T-ATA-ATTG----AAAAAAAA-T-TATGAATGTT-TATTTATTG-TTAAA-TAAA-ATAAA--TT--TAAAAAGGATTTT--CAGGATTCG--ACACA-CTCCC-------------------------CAGATCAG-TACAAC----ACAAAAAA-GA--CA-TACACGC
gi|7 : AAG-TTGTATGTGATACA-GT-TAGT-CACTAAAGTT-ATATCC-T-GAT-AAGAG-AG-T----------------AACA-TTCGAGGTA---CA-TA-C------------CT--TTC-A-ATCTTCGT--GAT---ATCAAAT---ATAATTT-TTATT--CATTTAAA--TGGAGG---------A------AT-GTA-AAT-------TTT--TCT-A-AC-ATC----AGAC--CT-A-CAAAGGG----------TAC-ATGTACATGTTCTGCTAC------TTCCCA--AA-AC-------GATA-GAAA-G--------CT-CTACT-----------AATGAC--TTTTCTTTAG-AC-A-CGCT-CTC-TATA-TTCTG-ATCGCCTGCTATTG-------------G---------------T---T-----------TACT-C-AC-CCTTATTCTACAGTTT-CTCCT-----GCAATGCCGCGTTGCTGGAGCAAAGTATTTA-AACGT-TT--GCTCAACTTACG-T---TTT-GTT--TT-GCCCATT---AACT---GC--TTTTTA-CACAAA--ACAC------A----ATCGTA---ATTCTTGGGAGCTGG-CATT---CT---TGTTGTG-GTT--AA-TTCTAGCCGTATTTTCGAA--TTG--C-ATG-TACG--TC-TGG-T-G-AA--AAAG-CTCT-ACAAAATT-ATTGA--CCGTCACTTG-T-ATA-ATTG-AAAAgtttttttttttttt
gi|8 : AGAAACAGGGCGCA-CAA-----CAA----------TC---CCCCGCTT-AC--TA-TACCT-GGACT-----------------ACAACTGAAAATTAACG-AAAGATTAAA--CCC-AG-TTGTATGTGATACA-GT-CAGT-CACTAAAGTT-ATATCC-TAGAC-AAGAG-CG-TGTGT-TTGATGACA-AAGTA-TTCGAGGTAATATA-TA-TGAGGTATTTGGTCA--TTC-A-ATCTTCGT--GA---TATGAAAT---ATAATTT-TTATT--CACTTGAA--TGGAGG---------A------AT-GTAG-AT-------TTT--TGT-G-AC-AAC----AGAC--CT-G-CAAAGAG----------CAC-ATGT------CCCGCTAC------TTCCCG--AA-AT-------GATA-GAAA-G--------CT-CTACTA----------AATGA---TTTTCTTTCG-AA-C-CGCT-CTG-TATA-TTCTG-A--------TATTC-------------A---------------
gi|9 : aAA--G-GTAA----TACCAATC---CCCCGCTT-GC--TA-TACCT-GGACTTTTA-AAAAGG--AACGACAACTG-AAATTAACGAAAAGAT--AA--CCCAAGTTTGTATGTGATACA-GT-CAGT-CACTAAAGTT-ATATCC-T-GAC-AAGAG-CG-TGTGT-TTGATGACA-AAGTA-TTCGAGGTAT-ATATTA-TGAGGTATTT-GTCA--TTC-A-ATCTTCGT--GA---TATG-AAT---ATAATTT-TTA-T--CACTTGAA--TGGAGG---------A------AT-GTAG-AT-------TTT--TGT-G-AC-AAC----AGAC--CT-G-CAAAGAG----------CAC-ATGT------CCCGCTAC------TTCCCG--AA-AT-------GATA-GAAA-acagttatcacatattatttg
blockSeqs : T G CCGT GTACCAA AAA . AC A T . AC GA A AAAAC A T GA . C T C C A C G C C AT A TAA T C G . AGA CT TGGT TAC C TT AA TGAGGCATTATTCCCC T AATATGCTGT GG C G G CTTT TT T A TTTGGGCTTA C ACATGT CTACTC TT T CTGGGAG A C TAATATTG T TGGGGCAGGAT GTT G A . T G A G TCGCCTGC AACAAGTTAGTCACATATA GT G CTT CTACAG T AACTT G CGT TGGAGCAAAGTATTTAAACGTTTGCTCAACTTAC T GTA TA AT T A GTA TAA CA TAA G TATAGTACGA A TC ACG C GAC TTAG . TAGTAT CC TA A C . . A . A TA . TA TT GCC GC A TA T GA A TC T T GTT A C T T T CA CTC CAATTCAAAACACACAAAAAGCATA CTTT TTTA C C AA . C . A G A ACAT TA G T . G T CT ATG A ACAGTAAAA C GT . . A T T T C . GTCA ATT TTAA A A A T CATTTCGCAA T T T C C GG A TTT A G . T TATTCAAAAC T . GC C G T G CAAA TC AAG G A . TC ATGTCTTAAACGAGC AA C TT TACATCTGT A T AA G A . . A T AT T T A AGA . ATTT A TTAG CT G C T G T A
blockSeqs : C . G TCACCA . . . . . . AA G A TAAAC A . GA . . . . . . . . . . A G ATA . . . . AA . T . . . . A . AAT . . . . . . . . . . . . . . . . . . . T C . . . . . . . GGGT TAACAGTTTTATCACATAT AG . . . T . . CG TTATAACATTTTGGACATAC T . T . . A TT . . TG . AAAC . A GAA . . TTGT . ATATT AC . . . . . . . . . . AG TT GC CT . T . A A AT T T TTA . . T T . A TC . CAT . A . . . . . . . A CCGT A . . . . . T G . GTAAA C . . . . . T . . . GCTT AT T A A . . TTACA T C . . . C . . . . . T AACTCAGTA T . C . . . . . T . G . . T ATGTTTTTTAACAC A . GT T T T AT . . . . . . AA A T . A . GT T TTA TC G C . . . .
blockSeqs : C . G TACCAA . . . . . . AA G A AAC A . GA . . . . . . . . . . A . TA . . . . AA . T . . . . A . AT . . . . . . . . . . . . . . . . . . . A . . . . . . . . . AACAGTTGTACAACATCA G . . . . . . G TCAAATTAC T . T . . . . . . TA . AACA . . GAG . . TTGT . CTAT C . . . . . . . . . . A T CC CC . A . A C T T T TA . . T T . A CT . AGT . C . . . . . . . . T A . . . . . T A . GTAA T . . . . . G . . . ATC A A A A . . TACAC . T . . . . . . . . . C ACTA . . G . . . . . A . A . . T ATGTTTAACACA A . T T A C AA . . . . . . . . . . A . AT T T C G C . . . .
blockSeqs : C . G CA . . . . . . AA G A GA A . GA . . . . . . . . . . A . TA . . . . AA . T . . . . G . AT . . . . . . . . . . . . . . . . . . . . . . . . . . . . . CAACATTTACACATAT G . . . . . . C ATAACTTAC T . . . . . . . . TA . ACAC . . GA . . TGTG . AATT C . . . . . . . . . . A T C CT . A . A A T T . TT . . . . . . CT . CAG . A . . . . . . . . G . . . . . . . G . . . . . . . . . . . . GC T . A A . . TACA . . . . . . . . . . . T AAC . . C . . . . . T . A . . . . . . T . . . TA . . . . . . . . . . . . A . . C T . . . . .
blockSeqs : . . G TG . . . . . . AA . . A . . G . . . . . . . . . . A . A . . . . A . T . . . . A . AT . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GTT C . . . . . . G TTAACTAAC . . . . . . . . . A . ACA . . AA . . TTG . TAG A . . . . . . . . . . A G C C . A . . . . . . . . . . . . . CT . CAG . . . . . . . . . TTCA . . . . . . . . G AAC . . C . . . . . T . A . . C . . . . . .
blockSeqs : . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . A . T . . . . A . AT . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TTAACTAA . . . . . . . . . . . A . . A . . GT . AT . A T T C . . . . . . . . . . . . . . . . . . . . . . . A .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . A . T . . . . A . . . . . . . . . . . . . . . . . . .
blockSeqCons : TACCA***** AA** AAC**** TA* ** AA** T*** AT******** AACAGTTTTACCACATAT*************************** G** TTAACTTAC***************************** T* ** TTGN** C** ** A* T* GC* T** TT** T** CT* T****** T* G** GTAA***** *** GTC** AT* TACA****** *** AACT*********** ATGTCTAACGC******* AA* ** A* AT**** T*** C*
originalCons : AGAAACAGGGCGCA-CAA--G-GTAA----CA----TC---CCCCGCTT-GC--TA-TACCT-GGACTTTTA-AAAAGGA-AACGACAACTGAAAATTAACG-AAAGAT--AA--CCCAAG-TTGTATGTGATACA-GT-CAGT-CACTAAAGTT-ATATCC-T-GAC-AAGAG-CG-TGTGT-TTGATGACA-AAGTA-TTCGAGGTA--ATA-TA-TGAGGTATTT-GTCA--TTC-A-ATCTTCGT--GAT--TATGAAAT---ATAATTT-TTATT--CACTTGAA--TGGAGG---------A------AT-GTAGAAT-------TTT--TGT-G-AC-AAC----AGAC--CT-A-CAAAGAG----------CAC-ATGT------CCCGCTAC------TTCCCG--AA-AT-------GATA-GAAA-G--------CT-CTACT-----------AATGA---TTTTCTTTCG-AA-C-CGCT-CTG-TATA-TTCTG-A--------TATTC-------------A---------------C---T-----------TATT-G-AG-C---ATT------TTT-CTACT-----GCAAT-CCCCGGTGC-------------TTA-AAC---TT--AC--------CGTT---TTT-GTT--TT-GCCC-TT---AACT---GC--TTTTTA-CACAAA--ACAC------A-CACATCACA-CGAT--TGGGGAACTGG-CATT---CTT-GTGTTTTG-GTT--AT-NTCTAGCCCTATTTTCGAAC-TTG--C-ATG-TACA--TC-TGA-T-G-AA--AAAA-TTCTAACAAAATTCATTGAC-CCGCCGCCTT-T-ATA-ATTG-AAAAAAAAAAA-T-TATGAATGTTATTTTTATTG-TT-AA-TAAA-ATAAAATTT--TAAAAAGGATTTT-GCAGGATTCG-AACACACCTCCT-------------------------CAGATCAGTTACAAC----ACACAAAA-AA--CA-TACACGCCTAACC-AC-TTCG-CTACCC-CG--TGATTTA-AT-AGT-A-TT-CGA-AGGT-TTAAATTTGACTTC--GATAAAA-GGAA---GTAAA-TGCCTAAAG--TTTT---TCTT-T-AAAAA-GTGTGTTTTTT-GTATA-TAATGG-GTCCAG-TC-TCCATTTTTTT---AAAACATGAAAATAGGATATACAGA-G-G---TTCACAACTATCATTTTAAACC-T-TCTTT-AGAA--TG-GAG---AC-TT-GACCCACTCAT-ATTTCAA---T---CA--A---TCAATGTTTTAA-TGG-CTAT-T-TT-A-CACC----TAT-T---TTTCATCGAAAC-TGCG-TAT-GAGCTATGTTTT--AA-CA--C-CCATT-ATTAATCAA-ACCTCAATTAATTTAGA--------TATAGAGAATCTTATATTTGGT-GT-A-GT--TGAG-A-TCAACCGACTAACTCATTTTTCAT-AAT--AG-AACCGAATTTTTTGTC--A--TTTTGAAATTTTTA-AGATATCCTGTGTCCTCAGAGCGGGGGATTTGCCCCGCC-TT-G-T-GCGCCCAGATTCTT
finalCons : AGAAACAGGGCGCA-CAA--G-GTAATACCA-----TC---CCCCGCTT-GC--TA-TACCT-GGACTTTTA-AAAAGGAA--CGACAACTGAAAATTAACG-AAAGATAAC----CCAAG-TTGTATGTGATACA-GT-CAGT-CACTAAAGTT-ATATCC-T-GAC-AAGAG-CG-TGTGT-TTGATGACA-AAGTA-TTCGAGGTATA-TA-TA-TGAGGTATTT-GTCA--TTCAA--TCTTCGT--GAT---ATGAAAT---ATAATTT-TTATT--CACTTGAA--TGGAGG---------A------AT-GTAGAT--------TTT--TGT-G-AC-AAC----AGAC--CT-A-CAAAGAG----------CAC-ATGT------CCCGCTAC------TTCCCG--AA-AT-------GATA-GAAA-G--------CT-CTACT-----------AATGA---TTTTCTTTCG-AA-C-CGCT-CTG-TATA-TTCTG-A--------TATTCAACAGTTTTACCACATAT---------------------------TATT-G-AG-C---ATT------TTT-CTACT-----GCAAT-CCCG--TGCTTAACTTAC-----------------------------GTT---TTT-GTT--TT-GCCC-TT---AACT---GC--TTTTTA-CACAAA--ACAC------A-CACATCACA-CGAT--TGGGGAACTGG-CATT---CTTGN--TTTTG-GTT--AT-NTCTAGCCCTATTTTCGAC--TTG--C-ATG-TACA--TC-TGA-T-G-AA--AAAA-TTCTA-CAAAAT-CATTGACGC-GCCGCCTT-T-ATA-ATTG-AAAAAAAAAAAT--TATGAATGTTATTTTTATTGTT--AA-TAAA-ATAAAATTTT--AAAAAGGATTTT-GCAGGATTCG-AACACACT-CCT-------------------------CAGATCAGTTACAAC----ACACAAAA-AA--CA-TACACGCCTAACC-AC-TTCG-CTACCT------GATTTA-AT-AGT-A-TT-CGA-AGGTT-TAAATTTGACTTCG--ATAAAA-GGAAGTAA-----TGCCTAAAG--TTTT---TCTT-T-AAAAA-GTGTGTTTTTT-GTATA-TAATGG-GTCCAGTC--TCCAT-TTTTT---AAAACATGAAAATAGGATATACAGA-G-GTACA------CTATCATTTTAAACC-T-TCTTT-AGAA--TG-GAG---AC-TT-GACCCACTCAT-ATTTCAAAACT-----------TCAATGTTTTAA-TGG-CTAT-T-TT-A-CACC----TAT-T---TTTCATCGAAAC-TGCG-TAT-GAGCTATGTCTAACGC-------CCATT-ATTAATCAA-ACCTCAATTAATTTAGA--------TATAGAGAATCTTAA-TTTGGT-GT-A-GT--TGAG-A-TCA-CCGACTAACTCATTTTTCAT-AAT--AG-AACCGAATTTTTTGTCAT----TTTGAAATTTT---AGATATCCTGTGTC-TCAGAGCGGGGGATTTGCCCCGCC-TT-G-T-GCGCCCAGATTCTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AGCCAAGTGTCCGATTCGCTTAGCTTGTCGAAGTCGACATTGGCTTGCGAAGATGCCAT
Alignments
lowQualScore : 1111 1 111 11111 1 1 11 111 11 2222222222222222 22222222 1 1111 2222222222 111111 111111 1111111 22222222 33333333333 111 111111111 11111111 11 11111 111111 6666666666666666666666666666666666666666 11111 1 111 111 11 22222222222 11 111 111 1111111 11111 1 22 11 1 11111 11 666666666666666666666666666 2222 2222222222 11 111 333333 111 11 111 222222222222 11 111 111 111 22222 1 11 111 1111111 1 33333 1111 1111 111 1 3333333333333 1 33333333333 11 11 333 1 111 11 111 22222
lowQualScore : 1 6 66 4444 1 5 66 55 5 5 000 777777 88888 3 5 55 5 5 5 5 5 5 5 5 0 55 55 0 5 33 000 5 66 5 11 66 5 5 888 5 66 0 66 7777777777777777 5 33333333 66 0 5 0000 8888 5 1111111111 5 444444 444444 66 5 6666666 5 5 00000000 5 88888888888 555 5 5 5 5 5 5 5 444444444 5 5 88888888 77 5 5 6 6 6 44 66666 77 777777 3333333333333333333333333333333333333333 5 66666 5 5 77 1 777 000 77 5 33 11111111111 5 0 33 4 2 5 000 222 5 5 9999999 77 5 22222 5 5 5 77 6 6 6 99 5 5 5 1 555 77 7 5 77 5 66 1 6 7 3 6 3 6 33333 6 44 6 666666666666666666666666666 0000 1111111111 6 6 66 8 8 444 8 111111 222 8 8 8 8 8 66 0 444 0 8 555555555555 3 0 0 11 444 8 333 888 8 0 8 8888 3 11 66666 3 7 6 6 9999 8 8 0 0 3 8 6 5 33 5 555 5 5 8888888 5 2 1 22222 5 2222 55 5 66 5 5 5 5 2222 77 000 1 5 5 6 88 0 0000000000000 88 8 5 0 99999999999 11 8 8 8 8 8 11 8 8 444 5 0 0 8 111 8 0 11 0 444 0 44444 0 6 6 2 6 6 6 6 6
lowQualScore : . . .. .... . . .. .. . . ... ...... ..... . . .. . . . . . . . . . .. .. . . .. ... . .. . .. .. . . ... . .. . .. ................ . ........ .. . . .... .... . .......... . ...... ...... .. . ....... . . ........ . ........... ... . . . . . . . ......... . . ........ .. . . . . . .. ..... .. ...... ........................................ . ..... . . .. . ... ... .. . .. ........... . . .. . . . ... ... . . ....... .. . ..... . . . .. . . . .. . . . . ... .. . . .. . .. . . . . . . . ..... . .. . ........................... .... .......... . . .. . . ... . ...... ... . . . . . .. . ... . . ............ . . . .. ... . ... ... . . . .... . .. ..... . . . . .... . . . . . . . . .. . ... . . ....... . . . ..... . .... .. . .. . . . . .... .. ... . . . . .. . ............. .. . . . ........... .. . . . . . .. . . ... . . . . ... . . .. . ... . ..... . . . . . . . . .
lowQualScore : 0 7 44 3333 4 0 99 44 0 0 000 999999 00000 1 0 66 0 0 0 0 0 0 0 0 0 11 11 0 0 11 111 0 99 0 55 99 0 0 888 0 99 2 99 2222222222222222 0 11111111 99 0 0 6666 1111 0 9999999999 0 444444 444444 99 0 2222222 0 0 77777777 7 66666666666 777 7 7 7 7 7 7 7 666666666 7 7 44444444 11 7 7 7 7 7 00 77777 77 777777 4444444444444444444444444444444444444444 7 44444 7 7 99 4 999 000 99 7 66 99999999999 7 7 66 3 3 7 000 333 7 7 7777777 99 7 99999 7 7 7 99 7 7 7 22 7 7 7 4 999 99 9 7 44 7 44 3 7 3 2 7 3 7 00000 7 00 7 888888888888888888888888888 0000 0000000000 7 7 77 0 0 000 0 000000 666 0 0 0 0 0 88 8 222 8 0 444444444444 2 8 8 00 000 0 000 444 0 8 0 2222 2 66 00000 2 3 7 7 3333 0 0 8 6 8 0 7 7 66 7 777 7 7 6666666 7 0 4 99999 0 1111 33 7 44 7 7 7 7 1111 44 000 4 7 7 7 88 6 6666666666666 88 0 4 8 00000000000 88 0 0 0 0 0 00 0 0 666 8 8 8 0 888 0 8 00 8 000 8 00000 8 7 7 5 7 7 7 7 7
consensus : AGAAACAGGGCGCA-CAAG-GTAA-T-ACCA-TCCCCCGCTT-GC--TA-TACCT-GGACTTTTA-AAAAGGA--ACGACAACTGAAAATTAACGAAA-GAT--AACCCAAGTT-GTATGTGATACA-GT-CAGT-CACTAAAGTT-ATATCC-T-GAC-AAGAG-CG-TGTGT-TTGATGACA-AAGTA-TTCGAGGT-AT-ATAT-A-TGAGGTATTT-GTCA--TTC-A-ATCTTC--G-TGAT-ATGAAAT---ATAATTT-TTA--TTCACTTGAA--TGGAGG---------A------AT-GTAGA--------TTTT--TGT-GAC-AAC----AGAC--C-T-ACAAAGAG----------CA-CATGT------CCCGCTAC------TTCCCG--AA-AT-------GATA-GAAA-G--------CT-CTACT-----------AATGA---TTTTCTTTC-GAA-C-CGC-TCTG-TAT-ATTCTG-A----TA---TT-C-AACAG-TTTAT-CACAT-AT-TATT-G-AG-CA-TTTTT-CTACT-----GCAATC-CC--G---TGC-------------TTA-----------A------------CTTAC-GTT---TTT-G-TT--TTGCCC-TT---AACT---GC--TTTTTA-CACAAA--ACAC------ACAC-ATCACA-CGAT--TGGGGAACTGG-CATT---CTTGNT-T-TTG-GTT--ATAT-CTAGCCCTATTTTCGA--CT-T--G--CA-T-G-TACA--TC-TG-AT-GAA--AA-AA-TTCT-A-CAAAA-T-CATTGAC--CGCCGCCTT-T-ATA-ATTG-AAAAAAAAAAAT-TATGAATGTTATTTTTATT-GTT-AATAAA-ATAAAATTT--TAAAAAGGA-TTTTGCAGGATTCG-AACACAC-TCC-T-------------------------CAGATCAGTTACAAC----AC--ACAAAA-AACA-TACACGCCTAACC-AC-TT---CGC-TACC------TGATTTA-AT-AGT-A-TT-CGA-AGGT-TTAAATTTGACTTC--GATAAAA-GGA---AGT--AAA-TGCCTAAAG--TTTT---TCTT-TAAAA-A-GTGTG-TTTTTTGTATA-TAATGG-GTCCAGTC-TCCATTTTTTT---AAAACATGAAAATAGGATATACAGA-G-G-T--ACA-CT-ATCATTTTAAACC-T-TCTTT-AGAA--TG-GAG---AC-TT-GACCCACTC-------AT-ATTTCAAAACT---TCAATGTT----TTAA-TGG-CTA-T-T-TTA-CACC----TAT-T---TTTCATCGAAAC-T-GCG-TAT-GAGCTATGTTTT--AAC--AC-CCATT-ATTAATCAA-ACCTCAATTAATTTAGATA--------TAGAGAATCT-TA-A-TTTGGT-GT-A-GT--TGAG-A-TCAA-CCGACTAACTCATTTTTCAT-AAT--AG-AACCGAATTTTTTGTC--ATTTT---GAAATTTT--A--GATATCCTGTGT-CT-CAGAGCGGGGGATTTGCCCCGCC-TT-G-T-GCGCCCAGATTCTT
Reference ( family-2345 ) : AGAAACAGGGCGCA-CAAG-GTAA-T-ACCA-TCCCCCGCTT-GC--TA-TACCT-GGACTTTTA-AAAAGGA--ACGACAACTGAAAATTAACGAAA-GAT--AACCCAAGTT-GTATGTGATACA-GT-CAGT-CACTAAAGTT-ATATCC-T-GAC-AAGAG-CG-TGTGT-TTGATGACA-AAGTA-TTCGAGGT-AT-ATAT-A-TGAGGTATTT-GTCA--TTC-A-ATCTTC--G-TGAT-ATGAAAT---ATAATTT-TTA--TTCACTTGAA--TGGAGG---------A------AT-GTAGA--------TTTT--TGT-GAC-AAC----AGAC--C-T-ACAAAGAG----------CA-CATGT------CCCGCTAC------TTCCCG--AA-AT-------GATA-GAAA-G--------CT-CTACT-----------AATGA---TTTTCTTTC-GAA-C-CGC-TCTG-TAT-ATTCTG-A----TA---TT-C-AACAGTTTTAC-CACAT-AT-TATT-G-AG-CA-TTTTT-CTACT-----GCAATC-CC--G---TGC-------------TTA-----------A------------CTTAC-GTT---TTT-G-TT--TTGCCC-TT---AACT---GC--TTTTTA-CACAAA--ACAC------ACAC-ATCACA-CGAT--TGGGGAACTGG-CATT---CTTGNT-T-TTG-GTT--ATNT-CTAGCCCTATTTTCGA--CT-T--G--CA-T-G-TACA--TC-TG-AT-GAA--AA-AA-TTCT-A-CAAAA-T-CATTGACG-CGCCGCCTT-T-ATA-ATTG-AAAAAAAAAAAT-TATGAATGTTATTTTTATT-GTT-AATAAA-ATAAAATTT--TAAAAAGGA-TTTTGCAGGATTCG-AACACAC-TCC-T-------------------------CAGATCAGTTACAAC----AC--ACAAAA-AACA-TACACGCCTAACC-AC-TT---CGC-TACC------TGATTTA-AT-AGT-A-TT-CGA-AGGT-TTAAATTTGACTTC--GATAAAA-GGA---AGT--AA--TGCCTAAAG--TTTT---TCTT-TAAAA-A-GTGTG-TTTTTTGTATA-TAATGG-GTCCAGTC-TCCATTTTTT----AAAACATGAAAATAGGATATACAGA-G-G-T--ACA-CT-ATCATTTTAAACC-T-TCTTT-AGAA--TG-GAG---AC-TT-GACCCACTC-------AT-ATTTCAAAACT---TCAATGTT----TTAA-TGG-CTA-T-T-TTA-CACC----TAT-T---TTTCATCGAAAC-T-GCG-TAT-GAGCTATGTCT---AAC--GC-CCATT-ATTAATCAA-ACCTCAATTAATTTAGATA--------TAGAGAATCT-TA-A-TTTGGT-GT-A-GT--TGAG-A-TC-A-CCGACTAACTCATTTTTCAT-AAT--AG-AACCGAATTTTTTGTC--ATTTT---GAAATTTT--A--GATATCCTGTGT-CT-CAGAGCGGGGGATTTGCCCCGCC-TT-G-T-GCGCCCAGATTCTT
gi|1 : AGAAACAGGGCGCA-CAAG-GTAA------A-TCCCCCGCTTTGC--TA-TACCT-GGACTTTTACAAAAGGAGAACGACAACTGAAAATTAACGAAA-GAT--AACCCAAGTT-GTATGTGATACACGT-CAGT--ACTAAAGTT-ATATCC-T-GAC-AAGAG-CGGTGTGT-TTGATGACA-AAGTA-TTCAAAGT-A--ATAT---TGAGGTATTT-GTCAAATTCTA-ATCTTC--G-TGATTATGAAAT---ATAATTT-TTA--TTCACTTGAA--TGGAGG---------A-------T-GTAGAA-------TTTT--TGT-GAC-AAC----AGAC----T-ACAAAGAG----------CA-CATGT------CCCGCTAC------TTTCCG--AA-AT-------GATA-GAAA-G--------CT--TACT-----------AATGA---TTTCTTTTC-GAA-CTCGC-TCTG-TAT-ATTCTG-A----T----TT-C-A------------------T-TATT-G-AG-CA-TTTT--CTACT-----GCAATC-CCCGA---TGC-------------TTA-----------AA-----------CTTACCGTT---TTT-G-TT--TTGCCT-TT---AACT---GC--TTTTTA-CACAAACTACAC------ACAC-ATCCTA-CGAT--TGGGGAACTCG-CATA---CTTCATGTGTTGCGTT--ATTG-TTAGCCCTATTTTCGAACCT-T--G--CA-T-G-TACACATCATG-ATTGAA--AA-CACTTCT-AACAAAA-TTCATTGACC-CGCCGCCTT-T-ATA-ATTG-AAAAAAAAAAAT-TATGAATGT-ATTCTTATT-GTT-AATAAA-ATAAAATTTCTTAAAAAGGA-TTTTGCAGGATTCG-AACACACCTCC-T-------------------------CAGAT-AGTTACAAG----AC--ACAAAA-AACAGTACATGCCTAACCCAC-TT---CGC-TACCCGCGCTTGATTTA-AT-AGT-ACTT-CGG-CGGTATTAATTCTGACTTC---ATAAAA-GGA---AGT--AGAGTGCCTAA-G--TTTTCTCTCTTCTAAAA-A-GTG-G-TTTTTTGTATA-TA-TGGAGTCCA-TC-TCCATTTTTTT---GAAACATGAAA-T-GGATTAACAGA-G-G-TTTACAACT-ATCATTTTAAACC-T-TCTTT-AGAA--TG-GAGG--AC-TT-GACCCACTC-------ATCATTTCAA--CTCAATCAATGTT----TTAACTGG-CTA-T-T-TTA-CACC----TAT-T---TTTCATCAAAAC-TTGTGCTGT-GAGCT-TGTTT---AAC--AC-CCATT-ATTAATCAA-ACCTCAATTAATTTAGATA--------TAGAAAATCT-TATA-TTTGGT-GT-AGGTCATGAG-A-TCAA-CCGACTAACTCATTTTTCAT-AAT--AGTAACCGATTTTTGTGTCTTATTTC---GAAATTTTTAA--GATACCCTGTGTCCT-CAGAGCGGGGGATTTGCCTCGCC-TT-G-T-GCGCCCAGATTCTT
gi|10 : AGAAACAGGG---A-CAACCGTA--T-ACCA-ATCCCCGCTT-ACACTA-AACCT-GGACTTTTA-AAAAGGA--CCGA-AACTGAAAATGAAC------AT--GA-CCAAGTT-GTATGT--TA-A-GTCCAGT-CACT-AAGTT-ATAT-C-T-G-C--AGAG-CG-TGTGTCTTGACGAC--AAGTA-TTCGAGG------TAC-A-TGAGGTACTT-GT----TTC-A-TCTTTT--GCTGGT-ATTAAAT---ATGATT
gi|11 : aaaGC-------------TCA-----------A------------ATTAC-GT----TTT-G-TT--TTGCCCATT---AACT---TC--TTTT-----CAAA--ACA-------AAAC-AT---A-CGAC--TTGGACGCTTG-CATT---CTTAGT-T-TTG-GTT---TAG-CTAGTTCTCGTACCGA--CTATCAG--CA-TAG-TATA--T
gi|12 : -TTTTC-AGAA--TC-GAG---AC-TT-GACCCATTC-------AT-A-TTCAAAAC----TCAGTATTGATCTTTA-TGG-C-A-T-T-TTA-CACCCAAATAT-TAAGTCTCATTGGAACAT-GCA-T
gi|13 : AGAATCAGAGTGCA-CAAG-GTAA-T-GCCA-AACCCCGCCT-AC--TA---CCT-GGACTTTTA-AAAAGGA--ACGACAACTGAAAATTAACggacgtgt
gi|15 : aATCCTGTGT-CT-CAGAGCGGGGGATTTGCCCTGCA-TT-G-T-GCGCCCAGATTCTT
gi|16 : ---TCAATGTT----T-GA-TGG-GTA-T-T-TTA-CACC----TAA-T---TTTCATCGAAAC-T-GCta
gi|17 : cTTC-AGAA--TG-GAG---AC-TT-GACCCATTC-------AT-ATTTAAAtgtg
gi|2 : tGGGCGCA-CAAG-GTAAGT-ACCAATCCCCCGCTT-GC--TAATACCT-GGACTTTTA-AAAAGGA--ACGACAACTGAAAATTA-C--AA-TGT--A-------TT-GGATGT---ACA-GT-CACTTCACTAAAGTTCATATCCCT-GACCAAGAG-CGCTGTGT-TTGATGACA-AAGTA-TTCGAGGT-A--ATAT-ACTGAGGTATTG-TTCA--TTC-A--TCTTC--G-TGAT-ATGAAAT---ATAATTTCTTA--TTCA-TTGAA--TGGAGG---------A------ATTGTAGA--------TTTT--TGTCGAC-ATC----AA----C-T-ACAAAG-G----------CA--ATGT------CCCG-TAC------TTCCAG--AA-AT-------GATAAGAAA-G--------CTTCTACTT----------AATGA---TTTTTCTTC-GAA-C-CG--TCTGGTAT-ATTCTGGA----TA---TT-C-AACAAGTTAGT-CACAT-ATATATT-G-AGGCA-TTTTT-CTACT-----GCAATCACC--G---TGC-------------ATA-----------A------------CTTAC-GTT---T---G-TT--TTGCCC-TTTT-AACT---GC--TTTTTG-CACAAAG-ACAC------ACA--ATCACA-C-AT--TGGGGA-CTGG-CATT---CTTGTT-T-ATG-GTTTAGTAT-CTAGCCCTTATTTCGA--CT-T--G--CA-T-GCTACA--TC-TG-AT-GAATAAA-AA-TTCTTA-CAAA--T-CATTGAC--CGCCGGCTTAT-TTA-ATTGGAAAAAAAAAAATCTATGAATGTTATTT--ATT-GTA-AATAAA-ATAAAATGG--TGAAAGGAT-TTTTGCATGATTCGCAACACAT-CCT-T-------------------------CAGA-CA-TTACAAC---------CAAAACAACA-TACACGC-TAACC-AC-TT---CGC-TACC------TGATTTG-ATGAGTTA-TT-CGA-AGGT-TTAAATTTGACTT---GATAAAG-GAA---AGT--AAA-TGCCTAAAG--TTTT---TCTT-TAAAAAA-GTGTG-TTTTTTATATA-TAATGG-GTCCAGTCATCCA-TTTTT----AAAACATGAAAATAGGATATACAGA-GTG-T--ACA-CT-ATCA--TTAAACCTT-TCTTT-AGAA--TG-GAGTTTTC-TT-GACCCACTC-------AT-A-TTCAAAACTA--ACAATG-T----TTAA-TGG-CTA-T-TGTTA--ACC----TATCT---TTTCATCAAAAC-T-GCG-TATCGAGCT-------------------ATT-ATTAATCAA-ACCTCAATTAATTTAGATA--------T-GAGAATCT-TA-A-TTTGGT-GT-A-GT--TGAG-ATTC-ATCCGACT-ACGCA-TTTTCAT-AATAGAG-AAACGAA-TTTTTGTC--ATTTTTTGAAAATTTTAGA--GATATCCTGTGT-CTCCAGAGCGGAGGTATTGCCCCGCCTTT-GTT-GCGCCAGGATTC
gi|3 : acagcGAAACAGG-CGCAGCAAG-GTAA-TCACCA-TCCCCCGGCT-GC--TA-TACCTTGGACTTTCA-AAAAGGA--ACGACAACTGAAAATTAACGA-----------------T-GTATGTGATACA-GT-CAGT-CACTAA-GTT-AT--CC-T-GAC-AAGAGGCG-TGT-T-TTGATGACATACGTAATTCGAG-T-AT-ATAT-A-TGAGGTATTT-GTCG--ATC-A--TCT-C--G-TGAT-ATGAAAT---A-AATTT-TT---TTC-TTTGAA--TGGAGG---------A------AT-GTAG----------TTT--TGTGGAC-AAC----AGAC--C-TAACAAAGAG----------CA-CATAT------CCCGCTAC-------TCCCG--AA-AT-------GATA-GAAA-G--------CT-CTACT-----------AATGA---TTTTCTGTCGGAA-C-CGC-TCTA-TTTAATTCTG-A----TA---TTCC-AACA--TTTA--CACAT-AT-TATT-G-AG-CATTTTTT-CTACT-----GCAATC-TC--G---TGC-------------TTA-----------A------------CTAAC-G-T---TTT-G--T--TTGCCC-TTGTAAACT---GC---TTTTA-CACAAA--ACAC------A-ACAATCACA-CGAT--T-GGGAACTGG-CATTGACCTTG---T-TTG-GTT--A--T-CTAG-CCTATTTTCGA--CT-T-----CA-T-G-TACA--TC-TGAAT-GAA--AA-AA-TTCT-AGCAAAA-T-CATTGAC--CGCCG-CTT-T-ATATATTGAAAAAAAAAAAAT-TATGGATG-TA-TTGTATTGGTTAAATAAACATAAAA-TT--TAAAAAGGATTTTTGC-GGA-TCG-AACACAC-T-C-T-------------------------CAGAT-AG-TACAAC----ATAAAAAAAA-AACA-TACACG-CTAACC-AC-TTGGGCTC-CACA------TAATTT--TT-AGT-A-TT-CGA-AGGT-TTAAATTTGACTTCATGA-AAAA-GGAAACAGTAAAA--TGC--AAAG--TTTT---TCTT-TAAAA-A-GTGTGTTTTTTTGTATACTAAT-G-GTCCAATC-T-CATTCTTTTTAAAAAACATG-AAATAGGATATACAGA-G-GTT--ACA-CT-A-CATTTCAACCT-T-TCTTT-AAAAC-TG-GAG---AC-TT-GACCAAATCAACTTCAAT-A-TTCAAAAC----TCAATG-T----TTAA-TGA--TATT-T-TTA-CACC-----AT-T---TTTCATCAAAAC-T-GCG-TAT-GAGCTATGTCTTA-AACGAGC-CCATT-ATTATACAA-ACCTCAA-TAATTTAGATA--------T--AGAATCTCTA-ATTTTGGT-GT-A-GT--TGAG-A-TCAA-CCGACT-ACTCATTTTTTATAAAT--AG-ATCCGAATTTTTTGTC--A-TTT---GAAA-TTT--A--GATATCCTGTGT-C--CAGA-C-GGGGATTTGCCCCGCC-TT-G-T-GCGCCCAGAGTCT
gi|4 : CGCTT-GC--TA-TACCT-G-ACTTTTA-AAAAGGA---CGACAACTGAAAATTAACGAAA-GATAAAACCCAATTT-GT-TTTG-TACA-GT-CAGT-CAC-AAAGTT-ATATCC-T-GAC-AA-AG-CG-TGTG--TTGATGACA-AAGTAGTTCGAGGT-ATAATAT-A-TGAGGTGTTT-GTCA--TTC-AGATCTCCTTC-TGAT-ATGAAATTACATAATTT-TTATTTTCACTTGAG--TGGAGG---------G------AT-GTAGA--------TTTT--TGT-GACGAAC----AGAC--CTT-AC-AAGAG----------CACCATGT------CCCAGCAC------TTCCCG--AATAT-------GATA-GAAACG--------CT-CT-CT-----------AATGA----TTTCTTTC-GAA-C-CGCTTCTG-TAT-TTGCTG-A----TA---TT-C-AACAGTTGTAC-AACATCAT-T-TT-GTAG-CT-CTTTT-CTACT-----GCAATT-CC--C---TGC-------------TTA-----------A------------CTAA----T---TTT-GTTT--TTGCCC-AT---AACT---GC--TTTTTA-CACAA-----AC------ACAC-ATCACA-CGATA-TGGG--ACTGGCCATT---C--GTT-T-TTG-GTT--CTAT-TTAGCCCTATTTTTAC--CT-T--GTACA-T-G-TACA--TC-TG-AT-G-A--AA-AA-TTCT-A-CAAAATT-CATTGACG-C-CCGCTTT-T-----ATTG----AACAAAAAT-TATGAATGTTA--TTTATT-G-----TAAC-ATAAAA-TT--TAAAAAGGA-TTCTGCAGG-TTCG--ACACAC-TCCGT-------------------------CAGATCAG-TACAAC----AC--A-ATCA-AACA-TACACG-CTAACC-ACATT---CGCTTACCG-----TGACTTATAT-AGT-A-TTGCGGTAGGTCTTAAA-TTGACTTC--AATTACC-GCA---A---------GCCT-AAG--TTTT---TATT-TAAAA-G-GTG----TTTTTGTATA-TAATGG-GTCCAG-C-TCCAT--------------AT----ATAGTATATTCAGA-G-G-T--TCA-CT-ATCA-TTTAAACT-TCTCTTT-AGAAGGTGAGAG---ACATTGGACCCACTC-------AT-ATTGCAAAAC----TCAATGTT----T--A-TGG-CTA-T-T-TTAGCA-C----TA--T---TTTCACAAAAGC-T-GCG-TA--GAGTTATGTTT---AAC--ACACCATTAATTAATCAACACCTCAA-TAATGTAGG-A--------TTAAGAATC--TA-A-TTTGGTGGTAA-GT--TGAGAA-TC---CCGACATACTCATTTTTCAT-AAT---G-GACCGAATTTTTTGTC--GTTTT---GAAATTTT--A--GATAT-CTGT-T-CT-CAGAGCGAGGGATTTG-CCCG-C-TT-G-TAGCGCC
gi|5 : -AA-TTCT-A-CAAAA-G-CATTAAT--TGTCGCCTT-TTATA--TTG-AACAAGAAGA---T-TGAATGTTATTTTTG---GTT-AAATAA-TTAAAATTC---AAAAATGA-TTTTGCAGGATTGG-AAC---C-TCC-TCAATTCAAAACACACAAAAAGCATACAGATCTTTTTCATCTTTAAC--ACAAAA-ACAA-TACACGC-TCACC-AC-TT---CGC-TACC------GGATT-A-AT-A-T-A-TT-CAA-AAGT---AAATTCGACTCC--GATAAAAAGGA---AGT--AA--TGTTTAAAAGTTTTT---TCTT-TAAAA-GTGCGGG-TTTTTTGTTTA-GAATGG-GTTCAGCT-TTCCTTTTTA----AAAATATGAAAATAGGATATACAGA-G-G-C--A
gi|5 : GAAGAT--GA-ATACAGAAG-G-T--ACA-CTTATTATTT-AAACC-T-TTTTTCAGAA--TG-GAA---AC-TT-GGCCAACT--------AT-ATT-CAAAACT----CAGTGTT----TTAA-TGGGCTA-TCT-TTA-CACC----TAT-T---TTCCATCAAAAC-T-GCG-TAT-GAGCCATGTTTTTTAAC--AC-CCATT--TTAATCAA-GCAT-AAGTAATTTAGATACATCTGTATACAGAATTC-TT-A-TTTGGT-GT-A-GT--TGAG-A-TC----CAACTAACTCATTTT-CAC-AAT--AG-AACCGAATTTTTTGGC--ATTTT---GAAATGTT--AAGGA-ATCCTGCGT-CT-CAGAGATAGGGATTTG--CCGCC-TTGG-T-GCGCCCAACTTCTTtttcgcaaggccaagtttccgattcgcgtttcggacaacacttggcttgcgaagatgaatacagaaggtacacttattatttaaaccttttttcagaatggaaacttggccaactatattcaaaactcagtgttttaatgggctatctttacacctattttccatcaaaactgcgtatgagccatgttttttaacacccattttaatcaagcataagtaatttagatacatctgtatacagaattcttatttggtgtagttgagatccaactaactcattttcacaatagaaccgaattttttggcattttgaaatgttaaggaatcctgcgtctcagagatagggatttgccgccttggtgcgcccaacttctt
gi|6 : aattctacaaaagcattaattgtcgccttttatattgaacaagaagattgaatgttatttttggttaaataattaaaattcaaaaatgattttgcaggattggaacctcctcaattcaaaacacacaaaaagcatacagatctttttcatctttaacacaaaaacaatacacgctcaccacttcgctaccggattaatatattcaaaagtaaattcgactccgataaaaaggaagtaatgtttaaaagttttttctttaaaagtgcgggttttttgtttagaatgggttcagctttcctttttaaaaatatgaaaataggatatacagaggcatttcgcaaggccaagtttccgattcgcgtttcggacaacacttggcttgcT-CTA--TTCACATGAAAATGGAGGTGAGGCATTATTCCCCAT-GTAGAATATGCTGTTTTGGTGT-GAC-AACCTTTAGACTTC-T-ACAAAGAGTTTGGGCTTACA-CATGT------CCCGCTACCTACTCTTCCTTTTAA-ATCTGGGAGGGTA-AAAA-GTAATATTGCT-CTATTTGGGGCAGGATAATGAGTTTTTTCTTTC-GAAAC-CGC-TCTG-TAT-ATTCTG-AGGGTTA---TT-CTAACAGTTTTAT-CACAT-AT-TATTAG-AG-CA-TTTTTTCTATTAACTTGAAATA-CC--G---TGC-------------TTATAACATTTTGGA------------CATAC-GTTGTATTTAG-TTATCTGCCT-TT---AACTTAAGCCATTTTTAACACAAA--ACACTATAGTACGA-ATCACAACGAT--TGGGGAACTGG-CATT---CTGTGT-T-TTG-GTT--ATATTCTAGCCCTATTTTCGA--CT-T--G--CAAT-G-TACA--TC-TG-AT-GAA--AAAAA-TTCT-A-CAAAA-T-CATTGACGCCGCCG-CTT-T-ATA-ATTG----AAAAAAAAT-TATGAATGTT-TATTTATT-GTTAAATAAA-ATAAA--TT--TAAAAAGGA-TTTT-CAGGATTCG--ACACAC-TCC-C-------------------------CAGATCAG-TACAAC----AC--AAAAAA-GACA-TACACGC
gi|7 : AAGTT-GTATGTGATACA-GT-TAGT-CACTAAAGTT-ATATCC-T-GAT-AAGAG-AG-T----------------AACA-TTCGAGGT-AC-ATAC-C-T----------------TTC-A-ATCTTC--G-TGAT-ATCAAAT---ATAATTT-TTA--TTCATTTAAA--TGGAGG---------A------AT-GTAAA--------TTTT--TCT-AAC-ATC----AGAC--C-T-ACAAAGGG----------TA-CATGTACATGTTCTGCTAC------TTCCCA--AA-AC-------GATA-GAAA-G--------CT-CTACT-----------AATGAC--TTTTCTTTA-GAC-A-CGC-TCTC-TAT-ATTCTG-A----TCGCCTG-C-TATTGGTTTACTCACCC--T-TATT-C-TA-CA-GTTT--CTCCT-----GCAATG-CC--GCGTTGCTGGAGCAAAGTATTTA-----------AACGTTTGCTCAACTTAC-G-T---TTT-G-TT--TTGCCCATT---AACT---GC--TTTTTA-CACAAA--ACAC------A----ATCGTA---ATTCTTGGGAGCTGG-CATT---CTTG-T-T-GTG-GTT--AATT-CTAGCCGTATTTTCGA--AT-T--G--CA-T-G-TACG--TC-TG-GT-GAA--AA-AG-CTCT-A-CAAAA-T-TATTGAC--CGTCACTTG-T-ATA-ATTG-AAAAgtttttttttttttt
gi|8 : AGAAACAGGGCGCA-CAA----------CAA-TCCCCCGCTT-AC--TA-TACCT-GGACT-----------------ACAACTGAAAATTAACGAAA-GATTAAACCC-AGTT-GTATGTGATACA-GT-CAGT-CACTAAAGTT-ATATCC-TAGAC-AAGAG-CG-TGTGT-TTGATGACA-AAGTA-TTCGAGGTAAT-ATAT-A-TGAGGTATTTGGTCA--TTC-A-ATCTTC--G-TGAT-ATGAAAT---ATAATTT-TTA--TTCACTTGAA--TGGAGG---------A------AT-GTAGA--------TTTT--TGT-GAC-AAC----AGAC--C-T-GCAAAGAG----------CA-CATGT------CCCGCTAC------TTCCCG--AA-AT-------GATA-GAAA-G--------CT-CTACTA----------AATGA---TTTTCTTTC-GAA-C-CGC-TCTG-TAT-ATTCTG-A----TA---TT-C-AACAG--TTAT-CACAT-AT-TATT-
gi|9 : aAAG-GTAA-T-ACCAATCCCCCGCTT-GC--TA-TACCT-GGACTTTTA-AAAAGGA--ACGACAACTGAAA-TTAACGAAAAGAT--AACCCAAGTTTGTATGTGATACA-GT-CAGT-CACTAAAGTT-ATATCC-T-GAC-AAGAG-CG-TGTGT-TTGATGACA-AAGTA-TTCGAGGT-AT-ATATTA-TGAGGTATTT-GTCA--TTC-A-ATCTTC--G-TGAT-ATGAA-T---ATAATTT-TTA--T-CACTTGAA--TGGAGG---------A------AT-GTAGA--------TTTT--TGT-GAC-AAC----AGAC--C-T-GCAAAGAG----------CA-CATGT------CCCGCTAC------TTCCCG--AA-AT-------GATA-GAAA-tg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AGCCAAGTGTCCGATTCGCTTAGCTTGTCGAAGTCGACATTGGCTTGCGAAGATGCCAT