lowQualScore : 2 1 1 3 77777 5 3333 1 1 44444 5 5555 3 1 1 1 1 0
lowQualScore : . . . . ..... . .... . . ..... . .... . . . . . .
lowQualScore : 2 7 7 3 55555 0 5555 7 7 22222 0 3333 5 7 7 7 7 9
consensus : ATTCAC-CC-GC-T-GCTGAGT-----GT-CCA----ATA-ATG-T-----GA-T---TT-A-C-AT-TGA-ACCCAGGGGA
Reference ( gi|9 ) : ATTCAC-CC-GC-T-GCTGAGT-----GT-CCA----ATA-ATG-T-----GA-T---CT-A-C-AT-TGA-ACCCAGGGGAA
gi|12 : ATTCAC-CC-GT-T-GCTGAGT-----GT-CCA----ATA-ATA-T-----GA-T---TT-A-C-AT-TGA-ACCCAGGGGA
gi|6 : ATTCAC-CC-GC-T-GCTGAGT-----GT-CAA----ATA-ATG-T-----GA-T---TT-A-C-AT-TGA-GCCCAGGGGA
gi|4 : caATTCAC-CC-AC-T-GGTGAGT-----GT-CCA----ATA-ATG-T-----GA-T---CT-T-C-AT-TGA-ACCCAGGGGAg
gi|10 : aggcaATTCAC-CC-GC-T-GCTGAGT-----GT-CCA----ATA-ATG-C-----GA-T---TT-A-C-AT-TGA-ACCCATGG
gi|5 : ATTCAC-CC-GC-TTGCTGAGT-----GT-CCA----ATA-ATG-T-----GA-T---TT-A-C-AT-TGA-ACCCATGGGagg
gi|11 : aATTCAC-CC-GC-T-GCTGAGT-----GT-CTA----ATA-ATG-T-----GA-T---TT-A-C-AT-TGA-ACCTAGgg
gi|13 : cATTCAC-CC-TCCT-GC-GAGT-----GA-CCA----ATA-ATG-T-----GA-T---CT-A-C-AT-TGA-ACCCAGGGGtgag
gi|3 : aATTCAC-CC-GC-T-GCTGAGT-----GT-CC-------A-ATG-T-----GA-T---TT-A-C-AT-TGA-ACCC
gi|20 : ctaggcaATTCAT-CT-GC-C-GCTAAGT-----GT-CCC----ATA-ATG----------T---TT-A-C-AT-TGA-ACCCAGGGGAtgagaagg
gi|1 : ATTCAC-CC-GC-T-GCTGAGTCTGAGGT-CCATCTTATA-ATG-T-----GATT---TT-A-C--T-TGA-ACC---GGGA
gi|2 : aggcaATTC-C-CA-TC-T-GCTGAGT-----GTGCCA----ATATATGAT-----GA-T---TTGA-C-AT---A-TCCCAGgg
gi|16 : cttagtaggctaTTCAC-CC-GC-T-GCTGAGT-----GT-CCA----ATA-ATG-T-----GA-T---CA-A-C-AT-TGA-AGCCAGGGG
gi|8 : TTCACGCC-GC-T-GCTGAAT-----GT-CCA----ATA-ATG-T-----GAGT---CT-A-C-ATGTGA-ACACAGGGAA
gi|7 : TTCAC-CCCGC-T-GCTGAGT-----GT-CCA----ATA-A---T-----GA-T---CA-A-C-AT-TGAGAGCGAGGG
gi|18 : aaatTCAG-TC-GC-T-GCTCAGT-----G---CA----ATA-ATG-------GACT---CT-A-C-AT-TGA-GCTCAGGGGAa
gi|22 : aC-CC-GC-T-GCTGAGT-----GT-CCA----ATA-ATG-T-----GA-T---CT-A-C-AT-TGA-ACCCAAGGGAg
gi|23 : -CC-GC-T-GCTGAGT-----GT-CCA----ATA-ATG-T-----GA-T---AT-A-C-AT-TGA-ACCCAGGGGAg
gi|27 : -CC-GC-T-GCTGAGT-----GT-CCA----ATA-ATG-T-----GA-g
gi|17 : C-GC-T-GCTGAGT-----GT-CAA----ATA-ATG-T-----GA-T---TT-A-C-AT-TGA-ACCCAGGGGA
gi|21 : gtatC-GC-T-GCTGAGTT----GT-CCA----TTA-ATG-T-----GA-TAGGTT-A-C-AT-TGA-A-CCAGGGGg
gi|24 : tgC-GC-TTGCTGAGT-----GTACCA----AT--ATG-T-----GA-T---CTAA-C-AT-TGA-A--CAGGGGA
gi|14 : C-AC-T-GCTGAG------GT-GCA----ATA-ATC-T-----GA-T----T-A-C-AT-TGA-A-CCAGGGGA
gi|19 : gcacgaa-GC-T-GCTGAGT-----GTTCCA----ATA-ATG-T-----GA-T---TT-AACGAT-TGA-ACCCAGGGGAgg
gi|15 : C-T-GCTAAGTT----GT-CCA----ATA-ATG-TGTATCGA-T---TC-A-C-AT-TGA-A-CCAGGGGAgg
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|25 ): CATATACATAATTACTAGGCAATTCACCCGCTGC
Unaligned ( gi|26 ): ACATACTAGGCAAATCACCCGCTGCTGAGT
Alignments
lowQualScore : 2 1 1 3 77777 4 3333 1 1 44444 4 222 5 1 1 1 0
lowQualScore : . . . . ..... . .... . . ..... . ... . . . . .
lowQualScore : 1 7 6 2 22222 8 4444 6 6 00000 8 999 0 7 7 7 4
consensus : ATTCAC-CC-GC-T-GCTGAGT-----GT-CCA----ATA-ATG-TG-----A-T---TT-AC-AT-TGA-ACCCAGGGGA
Reference ( family-2045 ) : ATTCAC-CC-GC-T-GCTGAGT-----GT-CCA----ATA-ATG-TG-----A-T---TT-AC-AT-TGA-ACCCAGGGGA
gi|1 : ATTCAC-CC-GC-T-GCTGAGTCTGAGGT-CCATCTTATA-ATG-TG-----ATT---TT-AC--T-TGA-ACC---GGGA
gi|10 : aggcaATTCAC-CC-GC-T-GCTGAGT-----GT-CCA----ATA-ATG-CG-----A-T---TT-AC-AT-TGA-ACCCATGGgg
gi|11 : ATTCAC-CC-GC-T-GCTGAGT-----GT-CTA----ATA-ATG-TG-----A-T---TT-AC-AT-TGA-ACCTAGagg
gi|12 : cATTCAC-CC-GT-T-GCTGAGT-----GT-CCA----ATA-ATA-TG-----A-T---TT-AC-AT-TGA-ACCCAGGGGAtgag
gi|13 : ATTCAC-CC-TCCT-GC-GAGT-----GA-CCA----ATA-ATG-TG-----A-T---CT-AC-AT-TGA-ACCCAGGGG
gi|14 : aC-AC-T-GCTGAG------GT-GCA----ATA-ATC-TG-----A-T---T--AC-AT-TGA-A-CCAGGGGA
gi|15 : gcacgaaC-T-GCTAAGTT----GT-CCA----ATA-ATG-TGTATCGA-T---TC-AC-AT-TGA-A-CCAGGGGAgg
gi|16 : TTCAC-CC-GC-T-GCTGAGT-----GT-CCA----ATA-ATG-TG-----A-T---CA-AC-AT-TGA-AGCCAGGGGgg
gi|17 : C-GC-T-GCTGAGT-----GT-CAA----ATA-ATG-TG-----A-T---TT-AC-AT-TGA-ACCCAGGGGA
gi|18 : gtatTCAG-TC-GC-T-GCTCAGT-----G---CA----ATA-ATG--G-----ACT---CT-AC-AT-TGA-GCTCAGGGGAg
gi|19 : a-GC-T-GCTGAGT-----GTTCCA----ATA-ATG-TG-----A-T---TTAACGAT-TGA-ACCCAGGGGAg
gi|2 : ATTC-C-CA-TC-T-GCTGAGT-----GTGCCA----ATATATGATG-----A-T---TTGAC-AT---A-TCCCAGgg
gi|20 : cttagtaggctaATTCAT-CT-GC-C-GCTAAGT-----GT-CCC----ATA-ATG----------T---TT-AC-AT-TGA-ACCCAGGGGA
gi|21 : C-GC-T-GCTGAGTT----GT-CCA----TTA-ATG-TG-----A-TAGGTT-AC-AT-TGA-A-CCAGGGG
gi|22 : tgC-CC-GC-T-GCTGAGT-----GT-CCA----ATA-ATG-TG-----A-T---CT-AC-AT-TGA-ACCCAAGGGA
gi|23 : -CC-GC-T-GCTGAGT-----GT-CCA----ATA-ATG-TG-----A-T---AT-AC-AT-TGA-ACCCAGGGGAg
gi|24 : C-GC-TTGCTGAGT-----GTACCA----AT--ATG-TG-----A-T---CTAAC-AT-TGA-A--CAGGGGAg
gi|27 : -CC-GC-T-GCTGAGT-----GT-CCA----ATA-ATG-TG-----A-
gi|3 : ATTCAC-CC-GC-T-GCTGAGT-----GT-CC-------A-ATG-TG-----A-T---TT-AC-AT-TGA-ACCC
gi|4 : ctaggcaATTCAC-CC-AC-T-GGTGAGT-----GT-CCA----ATA-ATG-TG-----A-T---CT-TC-AT-TGA-ACCCAGGGGAtgagaagg
gi|5 : aggcaATTCAC-CC-GC-TTGCTGAGT-----GT-CCA----ATA-ATG-TG-----A-T---TT-AC-AT-TGA-ACCCATGGG
gi|6 : aATTCAC-CC-GC-T-GCTGAGT-----GT-CAA----ATA-ATG-TG-----A-T---TT-AC-AT-TGA-GCCCAGGGGAgg
gi|7 : caTTCAC-CCCGC-T-GCTGAGT-----GT-CCA----ATA-A---TG-----A-T---CA-AC-AT-TGAGAGCGAGGGg
gi|8 : aaatTTCACGCC-GC-T-GCTGAAT-----GT-CCA----ATA-ATG-TG-----AGT---CT-AC-ATGTGA-ACACAGGGAAa
gi|9 : ATTCAC-CC-GC-T-GCTGAGT-----GT-CCA----ATA-ATG-TG-----A-T---CT-AC-AT-TGA-ACCCAGGGGA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): CATATACATAATTACTAGGCAATTCACCCGCTGC
Unaligned ( gi|26 ): ACATACTAGGCAAATCACCCGCTGCTGAGT
Alignments
lowQualScore : 2 1 1 3 77777 4 3333 1 1 44444 4 222 5 1 1 1 0
lowQualScore : . . . . ..... . .... . . ..... . ... . . . . .
lowQualScore : 1 7 6 2 22222 8 4444 6 6 00000 8 999 0 7 7 7 4
consensus : ATTCAC-CC-GC-T-GCTGAGT-----GT-CCA----ATA-ATG-TG-----A-T---TT-AC-AT-TGA-ACCCAGGGGA
Reference ( family-2045 ) : ATTCAC-CC-GC-T-GCTGAGT-----GT-CCA----ATA-ATG-TG-----A-T---TT-AC-AT-TGA-ACCCAGGGGA
gi|1 : ATTCAC-CC-GC-T-GCTGAGTCTGAGGT-CCATCTTATA-ATG-TG-----ATT---TT-AC--T-TGA-ACC---GGGA
gi|10 : aggcaATTCAC-CC-GC-T-GCTGAGT-----GT-CCA----ATA-ATG-CG-----A-T---TT-AC-AT-TGA-ACCCATGGgg
gi|11 : ATTCAC-CC-GC-T-GCTGAGT-----GT-CTA----ATA-ATG-TG-----A-T---TT-AC-AT-TGA-ACCTAGagg
gi|12 : cATTCAC-CC-GT-T-GCTGAGT-----GT-CCA----ATA-ATA-TG-----A-T---TT-AC-AT-TGA-ACCCAGGGGAtgag
gi|13 : ATTCAC-CC-TCCT-GC-GAGT-----GA-CCA----ATA-ATG-TG-----A-T---CT-AC-AT-TGA-ACCCAGGGG
gi|14 : aC-AC-T-GCTGAG------GT-GCA----ATA-ATC-TG-----A-T---T--AC-AT-TGA-A-CCAGGGGA
gi|15 : gcacgaaC-T-GCTAAGTT----GT-CCA----ATA-ATG-TGTATCGA-T---TC-AC-AT-TGA-A-CCAGGGGAgg
gi|16 : TTCAC-CC-GC-T-GCTGAGT-----GT-CCA----ATA-ATG-TG-----A-T---CA-AC-AT-TGA-AGCCAGGGGgg
gi|17 : C-GC-T-GCTGAGT-----GT-CAA----ATA-ATG-TG-----A-T---TT-AC-AT-TGA-ACCCAGGGGA
gi|18 : gtatTCAG-TC-GC-T-GCTCAGT-----G---CA----ATA-ATG--G-----ACT---CT-AC-AT-TGA-GCTCAGGGGAg
gi|19 : a-GC-T-GCTGAGT-----GTTCCA----ATA-ATG-TG-----A-T---TTAACGAT-TGA-ACCCAGGGGAg
gi|2 : ATTC-C-CA-TC-T-GCTGAGT-----GTGCCA----ATATATGATG-----A-T---TTGAC-AT---A-TCCCAGgg
gi|20 : cttagtaggctaATTCAT-CT-GC-C-GCTAAGT-----GT-CCC----ATA-ATG----------T---TT-AC-AT-TGA-ACCCAGGGGA
gi|21 : C-GC-T-GCTGAGTT----GT-CCA----TTA-ATG-TG-----A-TAGGTT-AC-AT-TGA-A-CCAGGGG
gi|22 : tgC-CC-GC-T-GCTGAGT-----GT-CCA----ATA-ATG-TG-----A-T---CT-AC-AT-TGA-ACCCAAGGGA
gi|23 : -CC-GC-T-GCTGAGT-----GT-CCA----ATA-ATG-TG-----A-T---AT-AC-AT-TGA-ACCCAGGGGAg
gi|24 : C-GC-TTGCTGAGT-----GTACCA----AT--ATG-TG-----A-T---CTAAC-AT-TGA-A--CAGGGGAg
gi|27 : -CC-GC-T-GCTGAGT-----GT-CCA----ATA-ATG-TG-----A-
gi|3 : ATTCAC-CC-GC-T-GCTGAGT-----GT-CC-------A-ATG-TG-----A-T---TT-AC-AT-TGA-ACCC
gi|4 : ctaggcaATTCAC-CC-AC-T-GGTGAGT-----GT-CCA----ATA-ATG-TG-----A-T---CT-TC-AT-TGA-ACCCAGGGGAtgagaagg
gi|5 : aggcaATTCAC-CC-GC-TTGCTGAGT-----GT-CCA----ATA-ATG-TG-----A-T---TT-AC-AT-TGA-ACCCATGGG
gi|6 : aATTCAC-CC-GC-T-GCTGAGT-----GT-CAA----ATA-ATG-TG-----A-T---TT-AC-AT-TGA-GCCCAGGGGAgg
gi|7 : caTTCAC-CCCGC-T-GCTGAGT-----GT-CCA----ATA-A---TG-----A-T---CA-AC-AT-TGAGAGCGAGGGg
gi|8 : aaatTTCACGCC-GC-T-GCTGAAT-----GT-CCA----ATA-ATG-TG-----AGT---CT-AC-ATGTGA-ACACAGGGAAa
gi|9 : ATTCAC-CC-GC-T-GCTGAGT-----GT-CCA----ATA-ATG-TG-----A-T---CT-AC-AT-TGA-ACCCAGGGGA
blockSeqs : G C C T T T . T A TATCG C AGG A G G G
blockSeqs : . . . T T G . . . . G . G . . .
blockSeqs : . . . . . A . . . . . . A . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons : ***** ****
originalCons : ATTCAC-CC-GC-T-GCTGAGT-----GT-CCA----ATA-ATG-TG-----A-T---TT-AC-AT-TGA-ACCCAGGGGA
finalCons : ATTCAC-CC-GC-T-GCTGAGT-----GT-CCA----ATA-ATG-TG-----A-T---TT-AC-AT-TGA-ACCCAGGGGA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): CATATACATAATTACTAGGCAATTCACCCGCTGC
Unaligned ( gi|26 ): ACATACTAGGCAAATCACCCGCTGCTGAGT
Alignments
lowQualScore : 2 1 1 3 77777 4 3333 1 1 44444 4 222 5 1 1 1 0
lowQualScore : . . . . ..... . .... . . ..... . ... . . . . .
lowQualScore : 1 7 6 2 22222 8 4444 6 6 00000 8 999 0 7 7 7 4
consensus : ATTCAC-CC-GC-T-GCTGAGT-----GT-CCA----ATA-ATG-TG-----A-T---TT-AC-AT-TGA-ACCCAGGGGA
Reference ( family-2045 ) : ATTCAC-CC-GC-T-GCTGAGT-----GT-CCA----ATA-ATG-TG-----A-T---TT-AC-AT-TGA-ACCCAGGGGA
gi|1 : ATTCAC-CC-GC-T-GCTGAGTCTGAGGT-CCATCTTATA-ATG-TG-----ATT---TT-AC--T-TGA-ACC---GGGA
gi|10 : aggcaATTCAC-CC-GC-T-GCTGAGT-----GT-CCA----ATA-ATG-CG-----A-T---TT-AC-AT-TGA-ACCCATGGgg
gi|11 : ATTCAC-CC-GC-T-GCTGAGT-----GT-CTA----ATA-ATG-TG-----A-T---TT-AC-AT-TGA-ACCTAGagg
gi|12 : cATTCAC-CC-GT-T-GCTGAGT-----GT-CCA----ATA-ATA-TG-----A-T---TT-AC-AT-TGA-ACCCAGGGGAtgag
gi|13 : ATTCAC-CC-TCCT-GC-GAGT-----GA-CCA----ATA-ATG-TG-----A-T---CT-AC-AT-TGA-ACCCAGGGG
gi|14 : aC-AC-T-GCTGAG------GT-GCA----ATA-ATC-TG-----A-T---T--AC-AT-TGA-A-CCAGGGGA
gi|15 : gcacgaaC-T-GCTAAGTT----GT-CCA----ATA-ATG-TGTATCGA-T---TC-AC-AT-TGA-A-CCAGGGGAgg
gi|16 : TTCAC-CC-GC-T-GCTGAGT-----GT-CCA----ATA-ATG-TG-----A-T---CA-AC-AT-TGA-AGCCAGGGGgg
gi|17 : C-GC-T-GCTGAGT-----GT-CAA----ATA-ATG-TG-----A-T---TT-AC-AT-TGA-ACCCAGGGGA
gi|18 : gtatTCAG-TC-GC-T-GCTCAGT-----G---CA----ATA-ATG--G-----ACT---CT-AC-AT-TGA-GCTCAGGGGAg
gi|19 : a-GC-T-GCTGAGT-----GTTCCA----ATA-ATG-TG-----A-T---TTAACGAT-TGA-ACCCAGGGGAg
gi|2 : ATTC-C-CA-TC-T-GCTGAGT-----GTGCCA----ATATATGATG-----A-T---TTGAC-AT---A-TCCCAGgg
gi|20 : cttagtaggctaATTCAT-CT-GC-C-GCTAAGT-----GT-CCC----ATA-ATG----------T---TT-AC-AT-TGA-ACCCAGGGGA
gi|21 : C-GC-T-GCTGAGTT----GT-CCA----TTA-ATG-TG-----A-TAGGTT-AC-AT-TGA-A-CCAGGGG
gi|22 : tgC-CC-GC-T-GCTGAGT-----GT-CCA----ATA-ATG-TG-----A-T---CT-AC-AT-TGA-ACCCAAGGGA
gi|23 : -CC-GC-T-GCTGAGT-----GT-CCA----ATA-ATG-TG-----A-T---AT-AC-AT-TGA-ACCCAGGGGAg
gi|24 : C-GC-TTGCTGAGT-----GTACCA----AT--ATG-TG-----A-T---CTAAC-AT-TGA-A--CAGGGGAg
gi|27 : -CC-GC-T-GCTGAGT-----GT-CCA----ATA-ATG-TG-----A-
gi|3 : ATTCAC-CC-GC-T-GCTGAGT-----GT-CC-------A-ATG-TG-----A-T---TT-AC-AT-TGA-ACCC
gi|4 : ctaggcaATTCAC-CC-AC-T-GGTGAGT-----GT-CCA----ATA-ATG-TG-----A-T---CT-TC-AT-TGA-ACCCAGGGGAtgagaagg
gi|5 : aggcaATTCAC-CC-GC-TTGCTGAGT-----GT-CCA----ATA-ATG-TG-----A-T---TT-AC-AT-TGA-ACCCATGGG
gi|6 : aATTCAC-CC-GC-T-GCTGAGT-----GT-CAA----ATA-ATG-TG-----A-T---TT-AC-AT-TGA-GCCCAGGGGAgg
gi|7 : caTTCAC-CCCGC-T-GCTGAGT-----GT-CCA----ATA-A---TG-----A-T---CA-AC-AT-TGAGAGCGAGGGg
gi|8 : aaatTTCACGCC-GC-T-GCTGAAT-----GT-CCA----ATA-ATG-TG-----AGT---CT-AC-ATGTGA-ACACAGGGAAa
gi|9 : ATTCAC-CC-GC-T-GCTGAGT-----GT-CCA----ATA-ATG-TG-----A-T---CT-AC-AT-TGA-ACCCAGGGGA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): CATATACATAATTACTAGGCAATTCACCCGCTGC
Unaligned ( gi|26 ): ACATACTAGGCAAATCACCCGCTGCTGAGT