lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 44444444 4444444444 111 11 444444444444444444444444444 22222222222222 3333 111111111 22222222 1111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111 222 444444444444444444444444444444444 22222222222222222 111111 111 2 1
lowQualScore : 00000000 5 77 77 1 1111111111 000 66 5 0 9 66 33 77 4 4 4 0 4 222222222222222222222222222 33333333333333 55 5555 3 222222222 88888888 4 1111111111 4 7777777777777777777777777777777777777777777777777777777777777777777777777777777777 666 000000 3 3 3 222 222222222222222222222222222222222 77777777777777777 3 444444 222 3 3 8 0 3 3
lowQualScore : ........ . .. .. . .......... ... .. . . . .. .. .. . . . . . ........................... .............. .. .... . ......... ........ . .......... . .................................................................................. ... ...... . . . ... ................................. ................. . ...... ... . . . . . .
lowQualScore : 33333333 7 99 99 7 4444444444 000 99 0 2 4 99 88 99 6 4 4 1 4 222222222222222222222222222 00000000000000 55 7777 6 333333333 88888888 0 7777777777 0 3333333333333333333333333333333333333333333333333333333333333333333333333333333333 666 666666 3 3 4 222 111111111111111111111111111111111 88888888888888888 0 333333 777 2 2 8 2 7 3
consensus : TAATACAAACA----C-ATGGA-TGC-NTG--GGTTGATATANATGTA-C-ATTT---T--G-GCTTAGTTTNG--TT--GTAATAAGTACAAA-TA-TAAAATT-T-----------CT-AA-AAACTATTAAAGGGACNTGT---A-A----TTTC-TATGAA--CGTTCAAAAGTTG-A-----A---ATA------TTA-TCA------C---CCCT-CCCTATA-CACGAT-ATGT-ACTCT----GCAC-AA-TTTTCCC----NATT--GT-TTNTG-A-C--TT--A-A----ATT--GAGAAATC--ATGG----G-AA-TAAATTACATTCNATAC-G-TAAATTG---TA--NNTATT---TT---TA-CGTA-T---AAAAACAT---------A--NA-TTTGGTTTTC---A--TCAT--TTTTGAGAAAGGATTCTTCATA-ATGTAGC-AGT
Reference ( gi|6 ) : TAATATAAACA----C-ATGGA-TGC-TTG--GATTGATATAAATGTA-CAATTT---T--G-GCTTAGTTTTG--TT--GTAACAAGTATAAA-TA-TAAAATT-T-----------AT-AA-AAACTATTAAAGGGACGTGT---A-A----TTTT-TATGAAT-CGTTCAAAAGTTG-A-----A---ATA------TTA-TCA------C---CCCT-CCATATA-CACAATCATGTCACTCT----ACACCAG-TTTTCCC----GATT--GT-TTATG-A-C--TT--A-A---AATT--GAGAAATC--GTGG----G-AA-TAAATTACATTCAATAC-G-TAAATTG---TA--AATATT---TT---TA-TGTA-T---AAAAACAT---------A--CA-TTTGGTTTTC---A--TCAT--TTTTGAGAAAGGATTCTTCATATATGTAGC-AGT
gi|7 : TAATATAAACA----C-ATGGA-TGC-TTG--GATTGATATAAATGTA-CAATTT---T--GTGCTTAGTTTTG--TTTGGTAACAAGTATAA--TA-TAAAATT-T-----------AT-AA-AAACTATTAAAGGGACGTGT---A-A----TTTT-TATGAATGCGTTCAAAAGTTGAA-----A---ATA-------TA-TCA------C---CCCT-CCATATA-CACAATCATGTCACTCT-----CACCAG-TTTTCCC----GATT--GT-TTATG-A-C--TT--A-A---AATTA-GAGAAATC--GTGG----G-AA-TAA--TACATTCAATAC-G-TAAATTG---TA--AATA-T---TT---TA-TGTA-TA--AAAAACA----------A--C--TTTGGTTTTC---A--TCA---TTTTGAGAAAGGATTCTTCATA-ATGTAGC-AGT
gi|5 : TAATATAAACA----CCATGGA-TGC-TTG--GATTGATATAAATGTAGCAATTTCTAT--G-GCTTA-TTTTG--TTTGGTAACAAGTATAAACTACTAAAATT-G-----------AT--A-AAACTATTAAAGGGACGTG----A-A----TTTT-TATGAAT-CGTTC-AAAGTT--------A---ATA-------TA-TCA------C---CCCT-CCATATAGCACAATCATGTCACCTT----GCACCCGATATTCCC----GATT--GT-TTATG-A-C--TTA-A-A---AATTGGGAGAAATC--GTGG----G-AA-TAA--TAGATTCAATAC-G-TAAATTGT--TA--AATA------T---TA-TGTA-TAA-AAAAACAT---------ACCCA-TTTGGTTTTC---A--TCAT--TTTT-AGAAAGGATTCTTCATA-ATGTAGC-AGT
gi|3 : cTAAAATAAA-A------ATGGA-TTC-ATGCAGGTTGATACATAT-------TTT---T--G-ATTTGGTTTGG--TT--GTAAAAGGTAC---------AAATT-T-----------CT-AACAAA--AT--AAGGAACTTAT---A-T----TTTG-TATGA---CGTTCAAAAATTA-A-----A---ATATAT---TTATTTA------C---CCC-----TATA-CA------------------------AA-TTTCCCC----CA-C--GT-TTG-G-A-CATTT--A-A---TATT--GAAATAT---ATGA----ACAA-TAAATTGTGTTCtagggtcaa
gi|21 : aAATACCAAAA------ATGAA-TGC-ATA--CGTTGATATACGAGT-----TTT---T--G-GCTTAATTCGG--TT--GTAATAAGAACAAA-TA-TATAATT-T-----------CT-AA-AAATAA--AAAAAGAC-T------------TTTC-TATGA---TGTTAAAAgctttacttatgaaaagataattttgatattcactttcataactgaaaattgtcgttataacataaacaaaatgcacatttttcacaatttctgcgttttttaacctacatggtatttcgtctcttggaattttcatagcagtaaaaatcgataacttaattttatttatttatttacattgtattgggagtatactaacagggggtcgtcacgaattgatcttccctcttctctatttaca
gi|19 : ttcactacAATACAAACAACAAT-ATTGA-TGCATGG--GGTTGATATATATAAA-C--------T--G-GTTTAATCT-GCTTT--GTAATTAGTA--GA-TC-TCAAATT-C-----------CT-TA-AA-CTGATGGAGGAACTTGT---A-AAACCTCTG-TGTGA---TGTTCAAAAGTTG-A-----G---ATA------Ttg
gi|8 : ATACAAACAAAA-C-AAGGAATGC-ATG--GGTTGATATAAAGAT--TGATTT---TTTG-GCTAAGTTTGG--CT--GTAA----TATAAA-TG-TAT--TT-T-----------CC-AA-AAACT--TA--GCGACATGT---A-AAT--TTTT-TATGA---TGTTCTAAAGTGT-A-----A---ATG------T-A-TTG------C---CCCTTCCCTATA-TA--ATT------CTTT----ATA--AA-TTTTCCC----CATT--GT-TTTTGGA-C--TT--T-A---TA----GAGAAATC--ATGG----G-GA-TAATTTGCATCCA-----G-TAAATT---------ATATTCAATT---TA-CATA-TTAAAAAAAAATCCCACTTTGA--TA-TTT-ATTTTC---A--TCGA--TTTTGA-AAAGAATT-----TGTTTGTAGCTAGT
gi|10 : gATAAA--------ATGGA-TGC-TTC--GGTTGATGT-----TA-T--TTT---T--T-GCTAAGTTTTG--CT--GTAATAGGTACAAA-TG-TAGAACTCT-----------TT-GA-AAA-TGT----GGCACTTCT---ACA----TTTTCTCTGA---TATTCAAAAGTGG-ATTTACATGTATA------TTA-CCC------C---CCCC-CCCTC---CCCGATAA---AACTCT----TTACAAA-ATTTCCC----CACT--GT-TTTTG-GGC--TT--GTATTTAATT--GAGAAATC--ATGC----G-AA-TAAATCACATTCCATACGG-TAAATCG---TG--TTCATT---TTACATACTTTATT---AAAAACAT---------gt
gi|13 : aa--G-GCTTAGCTTAG--TT--CTAATTAGTACAAA-TA---GGATT-TTCCTGAAAAAGAA-AA-AGAAAAT--AAGGGA-GTTTTAAA-A----TGTC-TATGAA---GTTAAAAATTTG-G-----A---ATA------T-A-CCA------C---CACT-CTCT---------T--TGTAAGTAT----ATACAAAATGTTCCC----ACTT---T-TTAGG-A-C--TT--G-A------T--GA---ATC--ATGG----A-AA-GAAATGATATTCAATGCAG-TAAATTGGTTTA--A----T---TT---TA-Tttcatagttcccattttcgt
gi|4 : AAA-TA-TAAACTT-T-----------CTTAC-AAA--AT--AAGGAACTCAT---A-AGA--TTTC-TATGG---CGCTCAAAAGTTG-G------------------TTA-CCC------T---CTCC-CTATATA--ACAAT---------------ACA--AA-TTTCCCC----A--C--AT-TTG-G-A-C--TTTTA-C---AAT---GAAAAATT--ATGGA---G-AA-TAAACTACATTCTGTTC-GATGAATTG---TA--CTCA-T---TT---TA-CTTT-T---GAAAAGAT---------A--AA-TTAGGATTTCTTTG--TCATAATTTTAAAAA
gi|18 : c---A-A----TTTA-CAAGGAT--GCTCAAAAGCTG-A-----A---ATACATGTATTT-TCA------TTTACCCT-CCCTATA-TA----------ACTCG----ATAAAAA-TTTCCCC----CAA---GT-TT-TGTA-C--TT--T-A-----TC--GAGAAATC--ATAG----G-AAATAAATTACATTCtgtaataattgtagtaaatgcatttttccccacaatgtccagtgccggtacattattttggactatatatggtatttcgtctctcggactttttttttatttggtgtatactgacaggggttcgccacgaaatgaccctctatctgctatatttacatacaaatagagga
gi|9 : ----TTTC-TATGAA---GCTCAAAAGTTG-A-----A---ATACAT---TTA-TTAATTTATC---GCCT-CC--------TAATTAC------CT----GCAC--A-TTTTC-------------------G-A-C--TT--T-A-----TT--GACAAATTCTGTGG--------------TACATTTCGTAC-AATAAATTT---CA--TTTATT---TT----A-CTTA-T---GGAAGC-T---------A--CAATTTGGTTTTC---ATTTCAT--TTcggtccgatagtact
gi|14 : cacTTT-TATTCCT-CTTTCTAGAGTCG-A-----A---ATA------T-A-TCA------C---TCTT-CCCTATA-CATG----TGTAGCTCTTTATGCACC-------CCCAAGGGAGT--GG---ATGGA-C--CT--A-A---G--T--GAGAAATC--ATGGTAATG-AA-TAAATTCCATTCTATAT------ATTG---TATCAAT-TT---CC---CC-TGT-------AAAACGT---------A--AA-TATAGCTTaaataatagtgccaacttctgtcgtcaaaaacccatacaaaacacatactattcacactgcgttcttttcactaaatgtgttttcgtattgatattttttatgaaatcaaagtcacgaaaatttatgtttatcttgggatttaca
gi|22 : TCCC----TATTTCGTGTTCTGGA-T--TT--A-A-----TG--GAGAAATC--ATGG----G-AA-TAAATTACATTGAATACGG-TGGAATG---T---ATTAAT---TT---TA-
gi|20 : aaaaccttcaatactctgG-G-C--TT--A-A-----TT--GAGACATC--ATGG----G-AA-TTAATTGCATTCCATATAA-TAGATTG---TA--TTCATC---TTA--TA-TGCA-----AAAGAC-T---------A--AA-TTATTTTTCC---A--TCAT--TGTTGGGAAAGGTTTGTTTATctaatt
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|1 ): CTAAGTCAATGTGTTATACTGTAATACCTGATATTGTTAAGGTTGTTGATACTAGATAGAATGTAGATACCATGTGAATGCATTGTTAATGTCTTTCTTAATTTTTTATGCTTTCCCAATGTGTATAAATTACTTGATGAATTGTGTATTTTGTTTACAGTTTGCCTTACGTTTGATGCGGAATAATAATACATTTCATCGTACTTTGAGTCCTGTCATCTCGACTAAGGCCAGCTTTATACATCTATATGATGTATAACAAGAGTTTGGTCGGCTCCATTCAAATATCTGCACTGGATCTGCCAGTAGTAGTATTTTTTGAAATGTTAGTCTGACTATAGCATTACAAATTACATGTTTAACATTTCTATGCAAAATGCAAGGAACTCATAAGAATTTCTATGACGCTTCCACCAAACTTAAAATAAATCTTCCACCGCTCCCACCATTACTATACAATATTTCACCGTCACCACGCCGGATTTAATTACCCATGAGAAATCATTGGGTTGGAAAAATTCCCATTTTGGTCACTGGAAATTGT
Unaligned ( gi|2 ): ATTAGTGAGATACTTGATGTGTTGCTTACATAGGGGTTGATTTGATCTTAAGTTCAATGTGTATACCTATTCCATGCGTGTAATGTTAAGCGTTGTTGATCACGAGGTATAAATGAGATTAATGTGATGCATAGTTAATGTTCTTTTACTTTTCTTATCTTCCTTGTATAATTGACTGAATGAAAATTGTCGCATTTGTTTACAGTTCTTACGTTGATGTCGGCTTAAAAAACATCATCCGTACTTTGGAGTCCGTGTGATCTGACTAAGCGCACAGCTATAGCATTAGTATGACTGTCAGGCTTGTCGGCACCATCAATCATGTCTGCCATTTCTGCAGTAGTGTATTTTGATTTAGTTTGACTTTTAGCATTAACATGTATATCTCTTAAAAAGTGAAAGAATCATACGATTTCTTGACGCCTCAAATAAAAAAATAAAATTATCACGCTCCCTATTGCATATAACAAGTTTCCCGCAGTTAAATTTTAATGGAGGGGAATCATTGGTGGGAACTTACATTTGGTATAATTGT
Unaligned ( gi|11 ): ATTGGCTGAGATGAACTTGTATATTGATTGAATATGGGGTTATTATGGCTAAGTCAATGTGTATACTAGTCACACATGTTAAAAGTTGTTGATACTAGTATAGAGTATAAACACACGTGATGCATTAATGCCTTTCTTAATTTTCTTATGTTTTACTTATATAATTAGTGAGGAAATTTGTATTGTTGACAGTTCTTAGGTTGATGTCGGGAATAAAATGATTATCAGTACTTTGATCTTGGCATTAACCAAGACAGCT
Unaligned ( gi|12 ): TACTTATTTTACTTATTGAAAATTAGATTTGCTTTTCTAGTCATATTTTGAAAATGTACCAGTTGTTTCAAACTTACACGCAGAATGAATGTTTTTCACTCTGACTATGTAAGTTCTTTTGAAGTATATGAAGTTTCATAACAGCATAGACTTGTATTTTATTTTCATAATGTTCCACTGGGAGGATACTTACAGGGACTCGCCACAAATTGACCCTAGATCTTCTATATCTAAACCAAAAGGA
Unaligned ( gi|15 ): AAGTAAAGTAAATGGACGCATGTGGGCTGATCTGTATTTTTGGTTGAGTTTGATCGTAAACTGCAATAAAAATTCTTTTTAAAAAAATGAAGGACTTGTACATTTTCTATGGTGTTGTTTGACCCCTCCCTATATATCTTTGCAAATTCCCCCACTGTTTTGG
Unaligned ( gi|16 ): ATTTTCCATTGAATTCAAAAGTTGAAATACTATTTATGAATTCATCGCCTTTTATAATTTCTTACGTTTTCGACTTTATATGAACAAATTTTTTAGTCATTTCGCTACAATATAATTGCATTAAACTACCATATGAAACATAAAAATTGGGTTGTCTTT
Unaligned ( gi|17 ): TTTGTTTTTAAAACTACAGAAAAAATAGAGAACTCGTGAATTTTGTATGAAACTCAAACGTTGAAATACATTTGATTTATCTCATTTCCTCCACGTTTTTTACTTCATTGACAAGTTCATACAATAAATTAAATTTACTTTGCTTATGGA
Unaligned ( gi|23 ): ACTTATTTTACTTATTCAAAATTAACATTTAGCTTTCATTGTCAATGTACTAGTTGTTAAAAATCATACACCAAAATTGAATATTTTTCAA
Alignments
lowQualScore : 222222 11 55555555555 11 3333333333333 1111 222222 11111111 999999999999999999999999999999999999 1111111111 11 3333333333333 111 1 11111111111 2222222222222222222 1111111 1 1
lowQualScore : 4 0 999999 4 1 22 4 1 22222222222 777 4 1 55 3 0 55 33 7777 3 3 3 7777777777777 1 1 44 3333 5 2 888888 999999999 2 99999999 3 999999 555 3 0 444444444444444444444444444444444444 3333333333 3 11 3 3 44 0000000000000 3 44 3 3 9999 6 2 888 3 55 9 3 3 44444444444 1111111111111111111 0 7777777 777 1 1 8 3 0 0
lowQualScore : . . ...... . . .. . . ........... ... . . .. . . .. .. .... . . . ............. . . .. .... . . ...... ......... . ........ . ...... ... . . .................................... .......... . .. . . .. ............. . .. . . .... . . ... . .. . . . ........... ................... . ....... ... . . . . . .
lowQualScore : 0 7 666666 4 0 22 4 0 66666666666 888 0 0 00 0 4 77 99 7777 6 6 6 9999999999999 2 0 66 6666 7 9 666666 444444444 9 99999999 1 666666 888 3 4 888888888888888888888888888888888888 0000000000 1 44 1 1 22 5555555555555 1 22 1 1 6666 2 2 999 3 22 8 3 2 88888888888 4444444444444444444 1 2222222 222 0 0 0 2 0 0
consensus : TAATACAAACA----C-ATGGA-TGCNTG--GG-TTGATATANA---TGTA-C--TTT---TG-GCTTAGTTTGGTT--GTAATAAGTACAAA-TA-TAAAA----TT-TCT-AA-AAACTATTA-------AAGGGACTTGT--A-A--TTT-CTAT-G-AA--CGTTCAAAAGTTGA-----A---A-TA------TTA-TCA------C---CCCT-CCCTATA-CA---CGAT-ATGT-A-CTC----TGCAC--AAT-TTTCCC----CATT--GT-TTNTG-A-C--TT--A-----A-A--TT-G--AGAAATCAT-G-G----GAATAAATTACATTCNATAC-G-TAAATTGT-ATTCA-TTT-TACGTA------T---AAAAA--CAT---------A-A--ATTTGGTTTTC---A---TCAT--TTTTGAGAAAGGATTC-TTCATA-ATGTAGC-AGT
Reference ( family-1870 ) : TAATACAAACA----C-ATGGA-TGCNTG--GG-TTGATATANA---TGTA-CA-TTT---TG-GCTTAGTTTNGTT--GTAATAAGTACAAA-TA-TAAAA----TT-TCT-AA-AAACTATTA-------AAGGGACNTGT--A-A--TTT-CTAT-G-AA--CGTTCAAAAGTTGA-----A---A-TA------TTA-TCA------C---CCCT-CCCTATA-CA---CGAT-ATGT-A-CTC----TGCAC--AAT-TTTCCC----NATT--GT-TTNTG-A-C--TT--A-----A-A--TT-G--AGAAATCAT-G-G----GAATAAATTACATTCNATAC-G-TAAATTGT-ANNTATTTT-TACGTA------T---AAAAA--CAT---------A-N--ATTTGGTTTTC---A---TCAT--TTTTGAGAAAGGATTC-TTCATA-ATGTAGC-AGT
gi|10 : -ATGGA-TGCTTC--GG-TTGATGT-TA---T-------TTT---TT-GCTAAGTTTTGCT--GTAATAGGTACAAA-TG-TAGAA----CTCTTT-GA-AAA-TGT-----------GGCACTTCT--ACA--TTTTCTCT-G-A---TATTCAAAAGTGGATTTACATGTA-TA------TTA-CCC------C---CCCC-CCCTC---CC---CGAT-AAA--A-CTC----TTTAC--AAAATTTCCC----CACT--GT-TTTTG-GGC--TT--GTATTTA-A--TT-G--AGAAATCAT-G-C----GAATAAATCACATTCCATACGG-TAAATCGT-GTTCA-TTT-TACATACTTTATT---AAAAA--CAT---------
gi|13 : aaataaaG-GCTTAGCTTAGTT--CTAATTAGTACAAA-TA-GGATT----TT-CCT-GA-AAAAGAAAAAGAAAATAAGGGAGTTTTAAA-A--TGT-CTAT-G-AA---GTTAAAAATTTGG-----A---A-TA-------TA-CCA------C---CACT-CTCTTTG-TA---AG-T-ATAT-A----------CAA--AAT-GTTCCC----ACTT---T-TTAGG-A-C--TT--G-----A-----T-G-----AATCAT-G-G----AAAGAAATGATATTCAATGCAG-TAAATTG--GTTTAATTT-TAttcatagttcccattttcgt
gi|14 : TTCTAGAGTCGA-----A---A-TA------T-A-TCA------C---TCTT-CCCTATA-CA---TG----TGT-AGCTCTTTATGCAC--------CCCCAAGGGAGT--GG-ATG-G-A-C--CT--A-----A-G---T-G--AGAAATCAT-G-GTAATGAATAAATTCCATTCTATAT------ATTGT-ATCAATTTC-C-CCTG------T----AAAA--CGT---------A-A--ATATAGCTTt
gi|15 : ttttattcctct-ATGGA-CGCATGTGGG-CTGATCTGTA---T-------TTT---TG-GTTGAGTTTGATC--GTAA--ACTGCAA-----TAAAAATTCTT-TTT-AA-AAA--AATG-------AAGG-ACTTGT--ACA--TTTTCTAT-G------GT------GTTG--------------------TT--TGA------C---CCCT-CCCTAT---------AT-AT-----CTT----TGCA---AA--TTCCCC----CACT--GT-TT
gi|16 : aagtaaagtaa--TTT-CCATTG-AA----TTCAAAAGTTGA-----A---A-TA------CTA-Ttgg
gi|18 : at--A-A--TTT-ACAA-G-GA--TGCTCAAAAGCTGA-----A---A-TACATGTATTT-TCA------TTTACCCT-CCCTATA-TAACTCGAT-A----------------AA--AAT-TTCCCC----CAA---GT-TTTGT-A-C--TT--T-----A----TC-G--AGAAATCATAG-G----AAATAAATTACATTCttatgaattcatcgccttttataatttcttacgttttcgactttatatgaacaaattttttagtcatttcgctacaatataattgcattaaactaccatatgaaacataaaaattgggttgtcttt
gi|19 : AATACAAACAACAAT-ATTGA-TGCATG--GGGTTGATATATA---TAAA-C--------TG-GTTTAATCTGCTTT-GTAATTAGTA--GA-TC-TCAAA----TT-CCT-TA-AA-CTGATG-------GAGGAACTTGT--A-AAACCT-CTGT-GTGA--TGTTCAAAAGTTGA-----G---A-TA------Tcggtccgatagtact
gi|20 : G-G-C--TT--A-----A----TT-G--AGACATCAT-G-G----GAATTAATTGCATTCCATATAA-TAGATTGT-ATTCATCTTATATGCA----------AAAGA--C-T---------A-A--ATTATTTTTCC---A---TCAT--TGTTGGGAAAGGTTTG-TTTAT
gi|21 : AATACCAAAA------ATGAA-TGCATA--CG-TTGATATACG---AGT-----TTT---TG-GCTTAATTCGGTT--GTAATAAGAACAAA-TA-TATAA----TT-TCT-AA-AAATAA--A-------AAAAGACT----------TTT-CTAT-G--A--TGTTAAAAtgccagtgtca
gi|22 : ttcactacT-A-CTC----TG-----------TCCC----TATTTCGTGTTCTG-G-A--TT--T-----A-A--TG-G--AGAAATCAT-G-G----GAATAAATTACATTGAATACGG-TGGAATGT-A-TTAATTT-TACtg
gi|3 : aaaaccttcaaAATA-AAA--------ATGGA-TTCATGCAGG-TTGATACATA---T-------TTT---TG-ATTTGGTTTGGTT--GTAAAAGGTACA---------AA----TT-TCT-AACAAA--AT---------AAGGAACTTAT--A-T--TTT-GTAT-G--A--CGTTCAAAAATTAA-----A---A-TATAT---TTATTTA------C--------CCCTATA-CA-----------------------------AAT-TTCCCC----CA-C--GT-TTG-G-A-CATTT--A-----ATA--TT-----GAAAT-AT-A-T----GAACAA-----------------TAAATTGT-GTTCG-CTT-TACTTA------T---GAAAA--GAT---------A-A--TTTTGATATTC---ACTTTCAT--taatt
gi|4 : ataaCAAA-TA-TAAAC----TT-TCTTAC-AAA--AT---------AAGGAACTCAT--A-AGATTT-CTAT-G-G---CGCTCAAAAGTTGG-------------------TTA-CC-----------CTCT-CCCTATA-TAA--CAAT-A-----------------C--AAA-TTTCCC----CAC---AT-TTG-G-A-C--TTTTA-----C-A--AT-G--AAAAATTAT-G-GA---GAATAAACTACATTCTGTTC-GATGAATTGT-ACTCA-TTT-TACTTT------T---GAAAA--GAT---------A-A--ATTAGGATTTCTTTG---TCATAATTTTAAAAAaactgaaaattgtcgttataacataaacaaaatgcacatttttcacaatttctgcgttttttaacctacatggtatttcgtctcttggaattttcatagcagtaaaaatcgataacttaattttatttatttatttacattgtattgggagtatactaacagggggtcgtcacgaattgatcttccctcttctctatttaca
gi|5 : TAATATAAACA----CCATGGA-TGCTTG--GA-TTGATATAAA---TGTAGCAATTTCTATG-GCTTA-TTTTGTTTGGTAACAAGTATAAACTACTAAAA----TT-GAT-AA-AA-CTATTA-------AAGGGACGTG---A-A--TTT-TTAT-G-AAT-CGTTCAAA-GTT-------A---A-TA------T-A-TCA------C---CCCT-CCATATAGCA---CAATCATGTCA-CCT----TGCACCCGAT-ATTCCC----GATT--GT-TTATG-A-C--TT--A-----A-AAATT-GGGAGAAATCGT-G-G----GAATAA--TAGATTCAATAC-G-TAAATTGTTAAATATT----ATGTA------T---AAAAAAACAT---------A-CCCATTTGGTTTTC---A---TCAT--TTTT-AGAAAGGATTC-TTCATA-ATGTAGC-AGTtgtaataattgtagtaaatgcatttttccccacaatgtccagtgccggtacattattttggactatatatggtatttcgtctctcggactttttttttatttggtgtatactgacaggggttcgccacgaaatgaccctctatctgctatatttacatacaaatagagga
gi|6 : cTAATATAAACA----C-ATGGA-TGCTTG--GA-TTGATATAAA---TGTA-CAATTT---TG-GCTTAGTTTTGTT--GTAACAAGTATAAA-TA-TAAAA----TT-TAT-AA-AAACTATTA-------AAGGGACGTGT--A-A--TTT-TTAT-G-AAT-CGTTCAAAAGTTGA-----A---A-TA------TTA-TCA------C---CCCT-CCATATA-CA---CAATCATGTCA-CTC----TACACC-AGT-TTTCCC----GATT--GT-TTATG-A-C--TT--A-----A-AA-TT-G--AGAAATCGT-G-G----GAATAAATTACATTCAATAC-G-TAAATTGT-AAATATTTT-TATGTA------T---AAAAA--CAT---------A-C--ATTTGGTTTTC---A---TCAT--TTTTGAGAAAGGATTC-TTCATATATGTAGC-AGTtagggtcaa
gi|7 : TAATATAAACA----C-ATGGA-TGCTTG--GA-TTGATATAAA---TGTA-CAATTT---TGTGCTTAGTTTTGTTTGGTAACAAGTATAA--TA-TAAAA----TT-TAT-AA-AAACTATTA-------AAGGGACGTGT--A-A--TTT-TTAT-G-AATGCGTTCAAAAGTTGA-----A---AATA------T-A-TCA------C---CCCT-CCATATA-CA---CAATCATGTCA-CTC----T-CACC-AGT-TTTCCC----GATT--GT-TTATG-A-C--TT--A-----A-AA-TTAG--AGAAATCGT-G-G----GAATAA--TACATTCAATAC-G-TAAATTGT-AAATA-TTT-TATGTA------T---AAAAA---AC---------A-A--CTTTGGTTTTC---A---TCA---TTTTGAGAAAGGATTC-TTCATA-ATGTAGC-AGT
gi|8 : ATACAAACAAAA-C-AAGGAATGCATG--GG-TTGATATAAAGATTG-A-TT-TTT---TG-GCTAAGTTTGGCT--GTAATA----TAAA-TG-TAT------TT-TCC-AA-AAACT--TA---------GCGACATGT--A-AATTTT-TTAT-G-A---TGTTCTAAAGTGTA-----A---A-TG------T-A-TTG------C---CCCTTCCCTATA-TA--------AT-T---CTT----TATA---AAT-TTTCCC----CATT--GT-TTTTGGA-C--TT--T-----A----TA-G--AGAAATCAT-G-G----GGATAATTTGCATCCA-----G-TAAATTAT-ATTCA-ATT-TACATA------TTAAAAAAA--AATCCCACTTTGA-T--ATTT-ATTTTC---A---TCGA--TTTTGA-AAAGAATTTGTT------TGTAGCTAGT
gi|9 : g--TTT-CTAT-G-AA---GCTCAAAAGTTGA-----A---A-TACAT---TTA-TTAATTTATC---GCCT-CC---TA-----------AT-T-A-C-C----TGCAC---AT-TTTC-------------------G-A-C--TT--------T-A--TT-G--ACAAATTCT-GTG----G-------TACATTTCGTACAA-TAAATTTC-ATTTA-TTT-TACTTA------T---GGAAG--C-T---------ACA--ATTTGGTTTTC---ATT-TCAT--TTgt
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): CTAAGTCAATGTGTTATACTGTAATACCTGATATTGTTAAGGTTGTTGATACTAGATAGAATGTAGATACCATGTGAATGCATTGTTAATGTCTTTCTTAATTTTTTATGCTTTCCCAATGTGTATAAATTACTTGATGAATTGTGTATTTTGTTTACAGTTTGCCTTACGTTTGATGCGGAATAATAATACATTTCATCGTACTTTGAGTCCTGTCATCTCGACTAAGGCCAGCTTTATACATCTATATGATGTATAACAAGAGTTTGGTCGGCTCCATTCAAATATCTGCACTGGATCTGCCAGTAGTAGTATTTTTTGAAATGTTAGTCTGACTATAGCATTACAAATTACATGTTTAACATTTCTATGCAAAATGCAAGGAACTCATAAGAATTTCTATGACGCTTCCACCAAACTTAAAATAAATCTTCCACCGCTCCCACCATTACTATACAATATTTCACCGTCACCACGCCGGATTTAATTACCCATGAGAAATCATTGGGTTGGAAAAATTCCCATTTTGGTCACTGGAAATTGT
Unaligned ( gi|2 ): ATTAGTGAGATACTTGATGTGTTGCTTACATAGGGGTTGATTTGATCTTAAGTTCAATGTGTATACCTATTCCATGCGTGTAATGTTAAGCGTTGTTGATCACGAGGTATAAATGAGATTAATGTGATGCATAGTTAATGTTCTTTTACTTTTCTTATCTTCCTTGTATAATTGACTGAATGAAAATTGTCGCATTTGTTTACAGTTCTTACGTTGATGTCGGCTTAAAAAACATCATCCGTACTTTGGAGTCCGTGTGATCTGACTAAGCGCACAGCTATAGCATTAGTATGACTGTCAGGCTTGTCGGCACCATCAATCATGTCTGCCATTTCTGCAGTAGTGTATTTTGATTTAGTTTGACTTTTAGCATTAACATGTATATCTCTTAAAAAGTGAAAGAATCATACGATTTCTTGACGCCTCAAATAAAAAAATAAAATTATCACGCTCCCTATTGCATATAACAAGTTTCCCGCAGTTAAATTTTAATGGAGGGGAATCATTGGTGGGAACTTACATTTGGTATAATTGT
Unaligned ( gi|11 ): ATTGGCTGAGATGAACTTGTATATTGATTGAATATGGGGTTATTATGGCTAAGTCAATGTGTATACTAGTCACACATGTTAAAAGTTGTTGATACTAGTATAGAGTATAAACACACGTGATGCATTAATGCCTTTCTTAATTTTCTTATGTTTTACTTATATAATTAGTGAGGAAATTTGTATTGTTGACAGTTCTTAGGTTGATGTCGGGAATAAAATGATTATCAGTACTTTGATCTTGGCATTAACCAAGACAGCT
Unaligned ( gi|12 ): TACTTATTTTACTTATTGAAAATTAGATTTGCTTTTCTAGTCATATTTTGAAAATGTACCAGTTGTTTCAAACTTACACGCAGAATGAATGTTTTTCACTCTGACTATGTAAGTTCTTTTGAAGTATATGAAGTTTCATAACAGCATAGACTTGTATTTTATTTTCATAATGTTCCACTGGGAGGATACTTACAGGGACTCGCCACAAATTGACCCTAGATCTTCTATATCTAAACCAAAAGGA
Unaligned ( gi|17 ): TTTGTTTTTAAAACTACAGAAAAAATAGAGAACTCGTGAATTTTGTATGAAACTCAAACGTTGAAATACATTTGATTTATCTCATTTCCTCCACGTTTTTTACTTCATTGACAAGTTCATACAATAAATTAAATTTACTTTGCTTATGGA
Unaligned ( gi|23 ): ACTTATTTTACTTATTCAAAATTAACATTTAGCTTTCATTGTCAATGTACTAGTTGTTAAAAATCATACACCAAAATTGAATATTTTTCAA
Alignments
lowQualScore : 222222 11 33333333333333 44444444444444 22222 222222 2222222222 9999999999999999999999999999999999999 22222222222222222222 333333333333333333333 111 111111 1111 11111111111 111111 1111111 1 1
lowQualScore : 4 0 999999 4 1 22 4 66666666666666 777 4 88 3 55 99999 55 55 7777 3 3 555 3 00000000000000 1 0 33333 2 2 888888 33 33 888888888 2 5555555555 888888 555 3 3 2222222222222222222222222222222222222 1 00000000000000000000 2 33 222222222222222222222 33 2 2 8888 6 2 888 2 3 4 111111 3 4 0000 66666666666 222222 7777777 777 1 1 8 3 0 0
lowQualScore : . . ...... . . .. . .............. ... . .. . .. ..... .. .. .... . . ... . .............. . . ..... . . ...... .. .. ......... . .......... ...... ... . . ..................................... . .................... . .. ..................... .. . . .... . . ... . . . ...... . . .... ........... ...... ....... ... . . . . . .
lowQualScore : 0 7 666666 4 0 22 4 22222222222222 888 0 66 6 00 66666 88 00 1111 3 3 888 3 77777777777777 6 2 00000 7 7 111111 44 44 222222222 7 9999999999 888888 444 1 5 0000000000000000000000000000000000000 9 33333333333333333333 9 99 000000000000000000000 99 9 9 9999 2 2 999 3 3 8 555555 0 0 3333 22222222222 888888 2222222 222 0 0 0 2 0 0
consensus : TAATACAAACA----C-ATGGA-TGCNTG--GG-TTGATATAAA---TGTA-C--TTT---TG-GCTTAGTTTGGTT--G-TA--AT----AAGTACAAA-TA-TAAAA----TT-TCT-A---A-AAACTATTAA-------AGGGACTTGTA-A---TTT-CTAT-G-AA--CG--TTCA--AAAGTTGA-----A---A-TA------TTA-TCA------C---CCCT-CCCTATA-CA---CGAT-ATGT-A-CTCT----GCA-C--AAT-TTTCCCCA-----TT--GT-T---TNT-GA-C--TT--A-----A-A--T-----T-G--AGAAATCAT-G-G----GAATAAATTACATTCNATAC-G-TAAATTGTATTCA-TTTTACGTA------TAAAA-A--CATA-A--A------TTTG------GTTTTC---A---TCAT--TTTTGAGAAAGGATTC-TTCATA-ATGTAGC-AGT
Reference ( family-1870 ) : TAATACAAACA----C-ATGGA-TGCNTG--GG-TTGATATANA---TGTA-C--TTT---TG-GCTTAGTTTGGTT--G-TA--AT----AAGTACAAA-TA-TAAAA----TT-TCT-A---A-AAACTATTAA-------AGGGACTTGTA-A---TTT-CTAT-G-AA--CG--TTCA--AAAGTTGA-----A---A-TA------TTA-TCA------C---CCCT-CCCTATA-CA---CGAT-ATGT-A-CTCT----GCA-C--AAT-TTTCCCCA-----TT--GT-T---TNT-GA-C--TT--A-----A-A--T-----T-G--AGAAATCAT-G-G----GAATAAATTACATTCNATAC-G-TAAATTGTATTCA-TTTTACGTA------TAAAA-A--CATA-A--A------TTTG------GTTTTC---A---TCAT--TTTTGAGAAAGGATTC-TTCATA-ATGTAGC-AGT
gi|1 : TTAGTCTGACT--A-TAGCATTACAAATTACATG-TT-TAACA----TT-TCT-ATGCA-AAA---TGCA-------AGGAACTCATA-AGAATTT-CTAT-G--A--CGCTTCCACCAAACTTAA-----A---A-TAAATC--TT--CCA------C---CGCT-CC------CA---CCAT----T-A-CTAT------A-C--AATATTTCACCG-----TC--AC-CACGCCG-GA-T--TT--A-----A-T--TACCCAT-G--AGAAATCAT-T-G----G
gi|10 : ctaagtcaatgtgttatactgtaatacctgatattgttaaggttgttgatactagatagaatgtagataccatgtgaatgcattgttaatgtctttcttaattttttatgctttcccaatgtgtataaattacttgatgaattgtgtattttgtttacagtttgccttacgtttgatgcggaataataatacatttcatcgtactttgagtcctgtcatctcgactaaggccagctttatacatctatatgatgtataacaagagtttggtcggctccattcaaatatctgcactggatctgccagtagtagtattttttgaaatg-ATGGA-TGCTTC--GG-TTGATGT--------TA-T--TTT---TT-GCTAAGTTTTGCT--G-TA--AT----AGGTACAAA-TG-TAGAA----CTCTTT-G---A-AAA-TGT-----------GGCACTTCTACA---TTTTCTCT-G-A---TA--TTCA--AAAGTGGATTTACATGTA-TA------TTA-CCC------C---CCCC-CCCTC---CC---CGAT-AAA--A-CTCT----TTA-C--AAAATTTCCCCA-----CT--GT-T---TTT-GGGC--TT--GTATTTA-A--T-----T-G--AGAAATCAT-G-C----GAATAAATCACATTCCATACGG-TAAATCGTGTTCA-TTTTACATACTTTATTAAAA-A--CATgttggaaaaattcccattttggtcactggaaattgt
gi|13 : aaataaaG-GCTTAGCTTAGTT--C-TA--AT----TAGTACAAA-TA-GGATT----TT-CCT-G---A-AAAAGAAAAAGAAAATAAGGGAGTTTTA-AAA-TGT-CTAT-G-AA---G--TTAA--AAATTTGG-----A---A-TA------T-A-CCA------C---CACT-CTCTTTG-TA---AG-T-ATAT-A-C---------A-A--AAT-GTTCCC-A-----CT--TT-T---TAG-GA-C--TT--G-----A----------T-G--A---ATCAT-G-G----AAAGAAATGATATTCAATGCAG-TAAATTGGTTTAA-TTTTAttcatagttcccattttcgt
gi|14 : --TTCT--AGAGTCGA-----A---A-TA------T-A-TCA------C---TCTT-CCCTATA-CA---TG----TGT-AGCTCTTTATGCA-C---------CCCCAAGGGAGT--GG-A---TG--GA-C--CT--A-----A-G--T-------G--AGAAATCAT-G-GTAATGAATAAATTCCATTCTATAT------ATTGTATCAA-TTTCCCCTG------T-AAA-A--CGTA-A--A------TATA------GCTTt
gi|15 : ttttattcctct-ATGGA-CGCATGTGGG-CTGATCT-------GTA-T--TTT---TG-GTTGAGTTTGATC--G-TA--A------ACTGCAA-----TAAAAATTCTT-TTT-A---A-AAA--AATGA-------AGG-ACTTGTACAT--TTT-CTAT-G------G--T--------GTTG--------------------TT--TGA------C---CCCT-CCCTAT---------AT-AT-----CTTT----GCA----AA--TTCCCCCA-----CT--GT-T---T
gi|16 : aagtaaagtaa---TTT-CCATTG-AA------TTCA--AAAGTTGA-----A---A-TA------CTA-Ttgg
gi|18 : atA-A---TTT-ACAA-G-GA--TG--CTCA--AAAGCTGA-----A---A-TACATGTATTT-TCA------TTTACCCT-CCCTATA-TAACTCGAT-A----------------A-A--AAT-TTCCCCCA-----A---GT-T---TTG-TA-C--TT--T-----A----T-----C-G--AGAAATCATAG-G----AAATAAATTACATTCttatgaattcatcgccttttataatttcttacgttttcgactttatatgaacaaattttttagtcatttcgctacaatataattgcattaaactaccatatgaaacataaaaattgggttgtcttt
gi|19 : AATACAAACAACAAT-ATTGA-TGCATG--GGGTTGATATATA---TAAA-C--T------G-GTTTAATCTGCTTT-G-TA--AT----TAGTA--GA-TC-TCAAA----TT-CCT-T---A-AA-CTGATGG-------AGGAACTTGTA-AAA-CCT-CTGT-GTGA--TG--TTCA--AAAGTTGA-----G---A-TA------Tcggtccgatagtact
gi|20 : -GG-C--TT--A-----A----T-----T-G--AGACATCAT-G-G----GAATTAATTGCATTCCATAT-AATAGATTGTATTCA-TCTTATATG------CAAAAGA--C-TA-A--A------TTAT------TTTTCC---A---TCAT--TGTTGGGAAAGGTTTG-TTTAT
gi|21 : AATACCAAAA------ATGAA-TGCATA--CG-TTGATATACG---AGT-----TTT---TG-GCTTAATTCGGTT--G-TA--AT----AAGAACAAA-TA-TATAA----TT-TCT-A---A-AAATAA--AA-------AAAGACT---------TTT-CTAT-G--A--TG--TTAA--AAtgccagtgtca
gi|22 : ttcactacT-A-CTCT----G------------TCCCTA-----TTTCGTGT---TCT-GG-A--TT--T-----A-A--T-----G-G--AGAAATCAT-G-G----GAATAAATTACATTGAATACGG-TGGAATGTATTAA-TTTTACtg
gi|3 : aaaaccttcaaAATA-AAA--------ATGGA-TTCATGCAGG-TTGATACATA---T-------TTT---TG-ATTTGGTTTGGTT--G-TA--AA----AGGTAC---------AAA----TT-TCT-A---ACAAA--AT--A-------AGGAACTTATA-T---TTT-GTAT-G--A--CG--TTCA--AAAATTAA-----A---A-TATAT---TTATTTA------C--------CCCTATA-CA------------------------------AAT-TTCCCCCA------C--GT-T---TG--GA-CATTT--A-----ATA--T-----T-----GAAAT-AT-A-T----GAACAA-----------------TAAATTGTGTTCG-CTTTACTTA------TGAAA-A--GATA-A--T------TTTG------ATATTC---ACTTTCAT--taatt
gi|4 : ataaCAAA-TA-TAAAC----TT-TCTTA---C-AAA--AT--A-------AGGAACTCATA-AGA-TTT-CTAT-G-G---CG--CTCA--AAAGTTGG-------------------TTA-CC-----------CTCT-CCCTATA-TAA--CAAT-A------------------C--AAA-TTTCCCCA-----C---AT-T---TG--GA-C--TTTTA-----C-A--A-----T-G--AAAAATTAT-G-GA---GAATAAACTACATTCTGTTC-GATGAATTGTACTCA-TTTTACTTT------TGAAA-A--GATA-A--A------TTAG------GATTTCTTTG---TCATAATTTTAAAAAaactgaaaattgtcgttataacataaacaaaatgcacatttttcacaatttctgcgttttttaacctacatggtatttcgtctcttggaattttcatagcagtaaaaatcgataacttaattttatttatttatttacattgtattgggagtatactaacagggggtcgtcacgaattgatcttccctcttctctatttaca
gi|5 : TAATATAAACA----CCATGGA-TGCTTG--GA-TTGATATAAA---TGTAGCAATTTCTATG-GCTTATTTTGTTT--GGTA--AC----AAGTATAAACTACTAAAA----TT-GAT-A---A-AA-CTATTAA-------AGGGACGTG-A-A---TTT-TTAT-G-AAT-CG--TTCA--AA-GTT-------A---A-TA------T-A-TCA------C---CCCT-CCATATAGCA---CAATCATGTCA-CCTT----GCA-CCCGAT-ATTCCCGA-----TT--GT-T---TAT-GA-C--TT--A-----A-AAAT-----T-GGGAGAAATCGT-G-G----GAATAA--TAGATTCAATAC-G-TAAATTGT-TAAA-TATTATGTA------TAAAA-AAACATA-CCCA------TTTG------GTTTTC---A---TCAT--TTTT-AGAAAGGATTC-TTCATA-ATGTAGC-AGTtgtaataattgtagtaaatgcatttttccccacaatgtccagtgccggtacattattttggactatatatggtatttcgtctctcggactttttttttatttggtgtatactgacaggggttcgccacgaaatgaccctctatctgctatatttacatacaaatagagga
gi|6 : cTAATATAAACA----C-ATGGA-TGCTTG--GA-TTGATATAAA---TGTA-CAATTT---TG-GCTTAGTTTTGTT--G-TA--AC----AAGTATAAA-TA-TAAAA----TT-TAT-A---A-AAACTATTAA-------AGGGACGTGTA-A---TTT-TTAT-G-AAT-CG--TTCA--AAAGTTGA-----A---A-TA------TTA-TCA------C---CCCT-CCATATA-CA---CAATCATGTCA-CTCT----ACACC--AGT-TTTCCCGA-----TT--GT-T---TAT-GA-C--TTA-A-----A-A--T-----T-G--AGAAATCGT-G-G----GAATAAATTACATTCAATAC-G-TAAATTGTAAATATTTTTATGTA------TAAAA-A--CATA-C--A------TTTG------GTTTTC---A---TCAT--TTTTGAGAAAGGATTC-TTCATATATGTAGC-AGTtagggtcaa
gi|7 : TAATATAAACA----C-ATGGA-TGCTTG--GA-TTGATATAAA---TGTA-CAATTT---TGTGCTTAGTTTTGTTTGG-TA--AC----AAGTATAA--TA-TAAAA----TT-TAT-A---A-AAACTATTAA-------AGGGACGTGTA-A---TTT-TTAT-G-AATGCG--TTCA--AAAGTTGA-----A---AATA------T-A-TCA------C---CCCT-CCATATA-CA---CAATCATGTCA-CTCT-----CA-CC-AGT-TTTCCCGA-----TT--GT-T---TAT-GA-C--TT--A-----A-AA-T-----TAG--AGAAATCGT-G-G----GAATAA--TACATTCAATAC-G-TAAATTGTAAATA-TTTTATGTA------TAAAA-A---ACA-A--C------TTTG------GTTTTC---A---TCA---TTTTGAGAAAGGATTC-TTCATA-ATGTAGC-AGT
gi|8 : ATACAAACAAAA-C-AAGGAATGCATG--GG-TTGATATAAAGATTGAT-T--TTT---TG-GCTAAGTTTGGCT--G-TA--AT----A----TAAA-TG-TAT------TT-TCC-A---A-AAACT--TA---------GCGACATGTA-AAT-TTT-TTAT-G-A---TG--TTCT--AAAGTGTA-----A---A-TG------T-A-TTG------C---CCCTTCCCTATA-TA--------AT-T---CTTT----ATA----AAT-TTTCCCCA-----TT--GT-T---TTTGGA-C--TT--------T-A--T-----A-G--AGAAATCAT-G-G----GGATAATTTGCATCCA-----G-TAAATTATATTCA-ATTTACATA------TTAAA-A--AA-A-A--ATCCCACTTTGATATTTATTTTC---A---TCGA--TTTTGA-AAAGAATTTGTT------TGTAGCTAGT
gi|9 : g---TTT-CTAT-G-AA---G--CTCA--AAAGTTGA-----A---A-TACAT---TTA-TTAATTTATC---GCCT-CC---TA-----------AT-T-A-C-CT----GCA-C--A-T-TTTC------------------------GA-C--TT--T-----A----T-----T-G--ACAAATTCT-GTG----G-------TACATTTCGTAC-AATAAATTTCATTTA-TTTTACTTA------TGGAA-G--C-TACA--A------TTTG------GTTTTC---ATT-TCAT--TTgt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): ATTAGTGAGATACTTGATGTGTTGCTTACATAGGGGTTGATTTGATCTTAAGTTCAATGTGTATACCTATTCCATGCGTGTAATGTTAAGCGTTGTTGATCACGAGGTATAAATGAGATTAATGTGATGCATAGTTAATGTTCTTTTACTTTTCTTATCTTCCTTGTATAATTGACTGAATGAAAATTGTCGCATTTGTTTACAGTTCTTACGTTGATGTCGGCTTAAAAAACATCATCCGTACTTTGGAGTCCGTGTGATCTGACTAAGCGCACAGCTATAGCATTAGTATGACTGTCAGGCTTGTCGGCACCATCAATCATGTCTGCCATTTCTGCAGTAGTGTATTTTGATTTAGTTTGACTTTTAGCATTAACATGTATATCTCTTAAAAAGTGAAAGAATCATACGATTTCTTGACGCCTCAAATAAAAAAATAAAATTATCACGCTCCCTATTGCATATAACAAGTTTCCCGCAGTTAAATTTTAATGGAGGGGAATCATTGGTGGGAACTTACATTTGGTATAATTGT
Unaligned ( gi|11 ): ATTGGCTGAGATGAACTTGTATATTGATTGAATATGGGGTTATTATGGCTAAGTCAATGTGTATACTAGTCACACATGTTAAAAGTTGTTGATACTAGTATAGAGTATAAACACACGTGATGCATTAATGCCTTTCTTAATTTTCTTATGTTTTACTTATATAATTAGTGAGGAAATTTGTATTGTTGACAGTTCTTAGGTTGATGTCGGGAATAAAATGATTATCAGTACTTTGATCTTGGCATTAACCAAGACAGCT
Unaligned ( gi|12 ): TACTTATTTTACTTATTGAAAATTAGATTTGCTTTTCTAGTCATATTTTGAAAATGTACCAGTTGTTTCAAACTTACACGCAGAATGAATGTTTTTCACTCTGACTATGTAAGTTCTTTTGAAGTATATGAAGTTTCATAACAGCATAGACTTGTATTTTATTTTCATAATGTTCCACTGGGAGGATACTTACAGGGACTCGCCACAAATTGACCCTAGATCTTCTATATCTAAACCAAAAGGA
Unaligned ( gi|17 ): TTTGTTTTTAAAACTACAGAAAAAATAGAGAACTCGTGAATTTTGTATGAAACTCAAACGTTGAAATACATTTGATTTATCTCATTTCCTCCACGTTTTTTACTTCATTGACAAGTTCATACAATAAATTAAATTTACTTTGCTTATGGA
Unaligned ( gi|23 ): ACTTATTTTACTTATTCAAAATTAACATTTAGCTTTCATTGTCAATGTACTAGTTGTTAAAAATCATACACCAAAATTGAATATTTTTCAA
Alignments
lowQualScore : 222222 11 33333333333333 44444444444444 22222 222222 2222222222 9999999999999999999999999999999999999 22222222222222222222 333333333333333333333 111 111111 1111 11111111111 111111 1111111 1 1
lowQualScore : 4 0 999999 4 1 22 4 55555555555555 777 4 88 3 55 99999 55 55 7777 3 3 555 3 00000000000000 1 0 33333 2 2 888888 33 33 888888888 2 5555555555 888888 555 3 3 2222222222222222222222222222222222222 1 00000000000000000000 2 33 222222222222222222222 33 2 2 8888 6 2 888 2 3 4 111111 3 4 0000 66666666666 222222 7777777 777 1 1 8 3 0 0
lowQualScore : . . ...... . . .. . .............. ... . .. . .. ..... .. .. .... . . ... . .............. . . ..... . . ...... .. .. ......... . .......... ...... ... . . ..................................... . .................... . .. ..................... .. . . .... . . ... . . . ...... . . .... ........... ...... ....... ... . . . . . .
lowQualScore : 0 7 666666 4 0 22 4 77777777777777 888 0 66 6 00 66666 88 00 1111 3 3 888 3 77777777777777 6 2 00000 7 7 111111 44 44 222222222 7 9999999999 888888 444 1 5 0000000000000000000000000000000000000 9 33333333333333333333 9 99 000000000000000000000 99 9 9 9999 2 2 999 3 3 8 555555 0 0 3333 22222222222 888888 2222222 222 0 0 0 2 0 0
consensus : TAATACAAACA----C-ATGGA-TGCNTG--GG-TTGATATAAA---TGTA-C--TTT---TG-GCTTAGTTTGGTT--G-TA--AT----AAGTACAAA-TA-TAAAA----TT-TCT-A---A-AAACTATTAA-------AGGGACTTGTA-A---TTT-CTAT-G-AA--CG--TTCA--AAAGTTGA-----A---A-TA------TTA-TCA------C---CCCT-CCCTATA-CA---CGAT-ATGT-A-CTCT----GCA-C--AAT-TTTCCCCA-----TT--GT-T---TNT-GA-C--TT--A-----A-A--T-----T-G--AGAAATCAT-G-G----GAATAAATTACATTCNATAC-G-TAAATTGTATTCA-TTTTACGTA------TAAAA-A--CATA-A--A------TTTG------GTTTTC---A---TCAT--TTTTGAGAAAGGATTC-TTCATA-ATGTAGC-AGT
Reference ( family-1870 ) : TAATACAAACA----C-ATGGA-TGCNTG--GG-TTGATATAAA---TGTA-C--TTT---TG-GCTTAGTTTGGTT--G-TA--AT----AAGTACAAA-TA-TAAAA----TT-TCT-A---A-AAACTATTAA-------AGGGACTTGTA-A---TTT-CTAT-G-AA--CG--TTCA--AAAGTTGA-----A---A-TA------TTA-TCA------C---CCCT-CCCTATA-CA---CGAT-ATGT-A-CTCT----GCA-C--AAT-TTTCCCCA-----TT--GT-T---TNT-GA-C--TT--A-----A-A--T-----T-G--AGAAATCAT-G-G----GAATAAATTACATTCNATAC-G-TAAATTGTATTCA-TTTTACGTA------TAAAA-A--CATA-A--A------TTTG------GTTTTC---A---TCAT--TTTTGAGAAAGGATTC-TTCATA-ATGTAGC-AGT
gi|1 : TTAGTCTGACT--A-TAGCATTACAAATTACATG-TT-TAACA----TT-TCT-ATGCA-AAA---TGCA-------AGGAACTCATA-AGAATTT-CTAT-G--A--CGCTTCCACCAAACTTAA-----A---A-TAAATC--TT--CCA------C---CGCT-CC------CA---CCAT----T-A-CTAT------A-C--AATATTTCACCG-----TC--AC-CACGCCG-GA-T--TT--A-----A-T--TACCCAT-G--AGAAATCAT-T-G----G
gi|10 : ctaagtcaatgtgttatactgtaatacctgatattgttaaggttgttgatactagatagaatgtagataccatgtgaatgcattgttaatgtctttcttaattttttatgctttcccaatgtgtataaattacttgatgaattgtgtattttgtttacagtttgccttacgtttgatgcggaataataatacatttcatcgtactttgagtcctgtcatctcgactaaggccagctttatacatctatatgatgtataacaagagtttggtcggctccattcaaatatctgcactggatctgccagtagtagtattttttgaaatg-ATGGA-TGCTTC--GG-TTGATGT--------TA-T--TTT---TT-GCTAAGTTTTGCT--G-TA--AT----AGGTACAAA-TG-TAGAA----CTCTTT-G---A-AAA-TGT-----------GGCACTTCTACA---TTTTCTCT-G-A---TA--TTCA--AAAGTGGATTTACATGTA-TA------TTA-CCC------C---CCCC-CCCTC---CC---CGAT-AAA--A-CTCT----TTA-C--AAAATTTCCCCA-----CT--GT-T---TTT-GGGC--TT--GTATTTA-A--T-----T-G--AGAAATCAT-G-C----GAATAAATCACATTCCATACGG-TAAATCGTGTTCA-TTTTACATACTTTATTAAAA-A--CATgttggaaaaattcccattttggtcactggaaattgt
gi|13 : aaataaaG-GCTTAGCTTAGTT--C-TA--AT----TAGTACAAA-TA-GGATT----TT-CCT-G---A-AAAAGAAAAAGAAAATAAGGGAGTTTTA-AAA-TGT-CTAT-G-AA---G--TTAA--AAATTTGG-----A---A-TA------T-A-CCA------C---CACT-CTCTTTG-TA---AG-T-ATAT-A-C---------A-A--AAT-GTTCCC-A-----CT--TT-T---TAG-GA-C--TT--G-----A----------T-G--A---ATCAT-G-G----AAAGAAATGATATTCAATGCAG-TAAATTGGTTTAA-TTTTAttcatagttcccattttcgt
gi|14 : --TTCT--AGAGTCGA-----A---A-TA------T-A-TCA------C---TCTT-CCCTATA-CA---TG----TGT-AGCTCTTTATGCA-C---------CCCCAAGGGAGT--GG-A---TG--GA-C--CT--A-----A-G--T-------G--AGAAATCAT-G-GTAATGAATAAATTCCATTCTATAT------ATTGTATCAA-TTTCCCCTG------T-AAA-A--CGTA-A--A------TATA------GCTTt
gi|15 : ttttattcctct-ATGGA-CGCATGTGGG-CTGATCT-------GTA-T--TTT---TG-GTTGAGTTTGATC--G-TA--A------ACTGCAA-----TAAAAATTCTT-TTT-A---A-AAA--AATGA-------AGG-ACTTGTACAT--TTT-CTAT-G------G--T--------GTTG--------------------TT--TGA------C---CCCT-CCCTAT---------AT-AT-----CTTT----GCA----AA--TTCCCCCA-----CT--GT-T---T
gi|16 : aagtaaagtaa---TTT-CCATTG-AA------TTCA--AAAGTTGA-----A---A-TA------CTA-Ttgg
gi|18 : atA-A---TTT-ACAA-G-GA--TG--CTCA--AAAGCTGA-----A---A-TACATGTATTT-TCA------TTTACCCT-CCCTATA-TAACTCGAT-A----------------A-A--AAT-TTCCCCCA-----A---GT-T---TTG-TA-C--TT--T-----A----T-----C-G--AGAAATCATAG-G----AAATAAATTACATTCttatgaattcatcgccttttataatttcttacgttttcgactttatatgaacaaattttttagtcatttcgctacaatataattgcattaaactaccatatgaaacataaaaattgggttgtcttt
gi|19 : AATACAAACAACAAT-ATTGA-TGCATG--GGGTTGATATATA---TAAA-C--T------G-GTTTAATCTGCTTT-G-TA--AT----TAGTA--GA-TC-TCAAA----TT-CCT-T---A-AA-CTGATGG-------AGGAACTTGTA-AAA-CCT-CTGT-GTGA--TG--TTCA--AAAGTTGA-----G---A-TA------Tcggtccgatagtact
gi|20 : -GG-C--TT--A-----A----T-----T-G--AGACATCAT-G-G----GAATTAATTGCATTCCATAT-AATAGATTGTATTCA-TCTTATATG------CAAAAGA--C-TA-A--A------TTAT------TTTTCC---A---TCAT--TGTTGGGAAAGGTTTG-TTTAT
gi|21 : AATACCAAAA------ATGAA-TGCATA--CG-TTGATATACG---AGT-----TTT---TG-GCTTAATTCGGTT--G-TA--AT----AAGAACAAA-TA-TATAA----TT-TCT-A---A-AAATAA--AA-------AAAGACT---------TTT-CTAT-G--A--TG--TTAA--AAtgccagtgtca
gi|22 : ttcactacT-A-CTCT----G------------TCCCTA-----TTTCGTGT---TCT-GG-A--TT--T-----A-A--T-----G-G--AGAAATCAT-G-G----GAATAAATTACATTGAATACGG-TGGAATGTATTAA-TTTTACtg
gi|3 : aaaaccttcaaAATA-AAA--------ATGGA-TTCATGCAGG-TTGATACA-------TA-T--TTT---TG-ATTTGGTTTGGTT--G-TA--AA----AGGTAC---------AAA----TT-TCT-A---ACAAA--AT--A-------AGGAACTTATA-T---TTT-GTAT-G--A--CG--TTCA--AAAATTAA-----A---A-TATAT---TTATTTA------C--------CCCTATA-CA------------------------------AAT-TTCCCCCA------C--GT-T---TG--GA-CATTT--A-----ATA--T-----T-----GAAAT-AT-A-T----GAACAA-----------------TAAATTGTGTTCG-CTTTACTTA------TGAAA-A--GATA-A--T------TTTG------ATATTC---ACTTTCAT--taatt
gi|4 : ataaCAAA-TA-TAAAC----TT-TCTTA---C-AAA--AT--A-------AGGAACTCATA-AGA-TTT-CTAT-G-G---CG--CTCA--AAAGTTGG-------------------TTA-CC-----------CTCT-CCCTATA-TAA--CAAT-A------------------C--AAA-TTTCCCCA-----C---AT-T---TG--GA-C--TTTTA-----C-A--A-----T-G--AAAAATTAT-G-GA---GAATAAACTACATTCTGTTC-GATGAATTGTACTCA-TTTTACTTT------TGAAA-A--GATA-A--A------TTAG------GATTTCTTTG---TCATAATTTTAAAAAaactgaaaattgtcgttataacataaacaaaatgcacatttttcacaatttctgcgttttttaacctacatggtatttcgtctcttggaattttcatagcagtaaaaatcgataacttaattttatttatttatttacattgtattgggagtatactaacagggggtcgtcacgaattgatcttccctcttctctatttaca
gi|5 : TAATATAAACA----CCATGGA-TGCTTG--GA-TTGATATAAA---TGTAGCAATTTCTATG-GCTTATTTTGTTT--GGTA--AC----AAGTATAAACTACTAAAA----TT-GAT-A---A-AA-CTATTAA-------AGGGACGTG-A-A---TTT-TTAT-G-AAT-CG--TTCA--AA-GTT-------A---A-TA------T-A-TCA------C---CCCT-CCATATAGCA---CAATCATGTCA-CCTT----GCA-CCCGAT-ATTCCCGA-----TT--GT-T---TAT-GA-C--TT--A-----A-AAAT-----T-GGGAGAAATCGT-G-G----GAATAA--TAGATTCAATAC-G-TAAATTGT-TAAA-TATTATGTA------TAAAA-AAACATA-CCCA------TTTG------GTTTTC---A---TCAT--TTTT-AGAAAGGATTC-TTCATA-ATGTAGC-AGTtgtaataattgtagtaaatgcatttttccccacaatgtccagtgccggtacattattttggactatatatggtatttcgtctctcggactttttttttatttggtgtatactgacaggggttcgccacgaaatgaccctctatctgctatatttacatacaaatagagga
gi|6 : cTAATATAAACA----C-ATGGA-TGCTTG--GA-TTGATATAAA---TGTA-CAATTT---TG-GCTTAGTTTTGTT--G-TA--AC----AAGTATAAA-TA-TAAAA----TT-TAT-A---A-AAACTATTAA-------AGGGACGTGTA-A---TTT-TTAT-G-AAT-CG--TTCA--AAAGTTGA-----A---A-TA------TTA-TCA------C---CCCT-CCATATA-CA---CAATCATGTCA-CTCT----ACACC--AGT-TTTCCCGA-----TT--GT-T---TAT-GA-C--TTA-A-----A-A--T-----T-G--AGAAATCGT-G-G----GAATAAATTACATTCAATAC-G-TAAATTGTAAATATTTTTATGTA------TAAAA-A--CATA-C--A------TTTG------GTTTTC---A---TCAT--TTTTGAGAAAGGATTC-TTCATATATGTAGC-AGTtagggtcaa
gi|7 : TAATATAAACA----C-ATGGA-TGCTTG--GA-TTGATATAAA---TGTA-CAATTT---TGTGCTTAGTTTTGTTTGG-TA--AC----AAGTATAA--TA-TAAAA----TT-TAT-A---A-AAACTATTAA-------AGGGACGTGTA-A---TTT-TTAT-G-AATGCG--TTCA--AAAGTTGA-----A---AATA------T-A-TCA------C---CCCT-CCATATA-CA---CAATCATGTCA-CTCT-----CA-CC-AGT-TTTCCCGA-----TT--GT-T---TAT-GA-C--TT--A-----A-AA-T-----TAG--AGAAATCGT-G-G----GAATAA--TACATTCAATAC-G-TAAATTGTAAATA-TTTTATGTA------TAAAA-A---ACA-A--C------TTTG------GTTTTC---A---TCA---TTTTGAGAAAGGATTC-TTCATA-ATGTAGC-AGT
gi|8 : ATACAAACAAAA-C-AAGGAATGCATG--GG-TTGATATAAAGATTGAT-T--TTT---TG-GCTAAGTTTGGCT--G-TA--AT----A----TAAA-TG-TAT------TT-TCC-A---A-AAACT--TA---------GCGACATGTA-AAT-TTT-TTAT-G-A---TG--TTCT--AAAGTGTA-----A---A-TG------T-A-TTG------C---CCCTTCCCTATA-TA--------AT-T---CTTT----ATA----AAT-TTTCCCCA-----TT--GT-T---TTTGGA-C--TT--------T-A--T-----A-G--AGAAATCAT-G-G----GGATAATTTGCATCCA-----G-TAAATTATATTCA-ATTTACATA------TTAAA-A--AA-A-A--ATCCCACTTTGATATTTATTTTC---A---TCGA--TTTTGA-AAAGAATTTGTT------TGTAGCTAGT
gi|9 : g---TTT-CTAT-G-AA---G--CTCA--AAAGTTGA-----A---A-TACAT---TTA-TTAATTTATC---GCCT-CC---TA-----------AT-T-A-C-CT----GCA-C---AT-TTTC------------------------GA-C--TT--------T-A--T-----T-G--ACAAATTCT-GTG----G-------TACATTTCGTACAA-TAAATTTCATTTA-TTTTACTTA------TGGAA-G--C-TACA--A------TTTG------GTTTTC---ATT-TCAT--TTgt
blockSeqs : C AAAC A A TG G AAATGTAGCAA CTA T TG G . T AC AC ATTC C T . C AGAAAAAGAAAATA C AAA T T AATGC . . TTTACATGT A CATGTATTT ATTTAT TTA T C GCACAATCATGTCACCTTGCACCCGAT C AGGGAGTGGATG G AT GTATTTAATT GG A T TAAT A A AG A T C . A G AACA AATCCCAC ATATTT ACTT TAA A A G C T T
blockSeqs : T CC . A CA . AAAGATTGATT . . T . . T A G . . . . . CTGATGG G CAT . . TGAT . . A . TATTTAT . . . C CACAATCATGTCACTCTACACCAGT C TTTCGTGTTCT . . TTACAAT . . . A A T AA A . A . G . CG CCCA . TTTG T G G . C . .
blockSeqs : T C . A . . AAATGTACAA . . . . . T A A . . . . . CTATTAA A AAA . . AATC . . A . CATTTA . . . C CACAATCATGTCACTCTCACCAGT C TTGTTTTTG . . AAAAATT . . . . A C GG C . T . G . GA CAA . ATT T G G . C . .
blockSeqs : T C . A . . AAATGTACAA . . . . . T A C . . . . . CTATTAA G AGA . . AATC . . A . TTA . . . C CCCGATAAAACTCTTTACAAAA C CTGTTTTT . . AAAATTA . . . . A A GA A . T . A . GA AA . A T G G . .
blockSeqs : C . . T . . ATATAAAC . . . . . A A A . . . . . CTATTAA A AAT . . GAT . . A . CTA . . . C CATGTGTAGCTCTTTATGCAC T CTTTTTAG . . AATATT . . . . A T AA C . G . A . CA AT . A A . .
blockSeqs : . . . T . . ACGAGT . . . . . C A A . . . . . AATGA A CA . . AT . . G . TTA . . . C TAAGTATATACAAAAT C TTGTTTAT . . AAAATT . . . . A A G C . G . A . AA AA . A T
blockSeqs : . T . . GTAT . . . . . C A A . . . . . TAAAA G A . . AA . . A . TTA . . . C TAACTCGATAAAAAT C TTGTTTAT . . TAATG . . . . A A G A . G . T . C CA . A .
blockSeqs : . A . . ATAT . . . . . C A A . . . . . CTTA G T . . AA . . A . TA . . . A TAATTCTTTATAAAT G TTGTTTAT . . AAGT . . . . T A G T . A . G . A AC .
blockSeqs : . . . . T . G . . . . . TGT G A . . AT . . A . TA . . . A ATATCTTTGCAAA G AGTTTTG . . TATC . . . . . A G T . T . . . C
blockSeqs : . . . . . . . . . . . ATA G A . . AC . . A . TT . . . A ATTACCTGCACAT G CGTTTG . . AATT . . . . . C . C .
blockSeqs : . . . . . . . ATA . A . . GC . . A . TA . . . C TAACAATACAAA C CATTTG . . TATA . . . . . . . T .
blockSeqs : . . . AT . . A . TA . . . . CAAAT . . . . TATT . . . . .
blockSeqs : . . AA . . . . TA . . . GAT . . . .
blockSeqs : . . . . . . .
blockSeqs : . .
blockSeqCons : C***** AAATGTACGA**** ** T**** *** CTATTAA******* A**** ** ** TA******** CAACTCTNTACAAAT********************** CTGTTTNT************ AATT***************** ******
originalCons : TAATACAAACA----C-ATGGA-TGCNTG--GG-TTGATATAAA---TGTA-C--TTT---TG-GCTTAGTTTGGTT--G-TA--AT----AAGTACAAA-TA-TAAAA----TT-TCT-A---A-AAACTATTAA-------AGGGACTTGTA-A---TTT-CTAT-G-AA--CG--TTCA--AAAGTTGA-----A---A-TA------TTA-TCA------C---CCCT-CCCTATA-CA---CGAT-ATGT-A-CTCT----GCA-C--AAT-TTTCCCCA-----TT--GT-T---TNT-GA-C--TT--A-----A-A--T-----T-G--AGAAATCAT-G-G----GAATAAATTACATTCNATAC-G-TAAATTGTATTCA-TTTTACGTA------TAAAA-A--CATA-A--A------TTTG------GTTTTC---A---TCAT--TTTTGAGAAAGGATTC-TTCATA-ATGTAGC-AGT
finalCons : TAATACAAACAC-----ATGGA-TGCNTG--GG-TTGATATAAATGTACGA----TTT---TG-GCTTAGTTTGGTT--G-TA--AT----AAGTACAAA-TA-TAAAA----TT-TCT-A---A-AAACTATTAA-------AGGGACTTGTAA----TTT-CTAT-G-AA--CG--TTCA--AAAGTTGA-----A---A-TATA--------TCA------C---CCCT-CCCTATACAACTCTNTACAAAT----------------------TTTCCCCACTGTTTNT------------GA-C--TTAATT-----------------G--AGAAATCAT-G-G----GAATAAATTACATTCNATAC-G-TAAATTGTATTCA-TTTTACGTA------TAAAA-A--CATA-A--A------TTTG------GTTTTC---A---TCAT--TTTTGAGAAAGGATTC-TTCATA-ATGTAGC-AGT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): ATTAGTGAGATACTTGATGTGTTGCTTACATAGGGGTTGATTTGATCTTAAGTTCAATGTGTATACCTATTCCATGCGTGTAATGTTAAGCGTTGTTGATCACGAGGTATAAATGAGATTAATGTGATGCATAGTTAATGTTCTTTTACTTTTCTTATCTTCCTTGTATAATTGACTGAATGAAAATTGTCGCATTTGTTTACAGTTCTTACGTTGATGTCGGCTTAAAAAACATCATCCGTACTTTGGAGTCCGTGTGATCTGACTAAGCGCACAGCTATAGCATTAGTATGACTGTCAGGCTTGTCGGCACCATCAATCATGTCTGCCATTTCTGCAGTAGTGTATTTTGATTTAGTTTGACTTTTAGCATTAACATGTATATCTCTTAAAAAGTGAAAGAATCATACGATTTCTTGACGCCTCAAATAAAAAAATAAAATTATCACGCTCCCTATTGCATATAACAAGTTTCCCGCAGTTAAATTTTAATGGAGGGGAATCATTGGTGGGAACTTACATTTGGTATAATTGT
Unaligned ( gi|11 ): ATTGGCTGAGATGAACTTGTATATTGATTGAATATGGGGTTATTATGGCTAAGTCAATGTGTATACTAGTCACACATGTTAAAAGTTGTTGATACTAGTATAGAGTATAAACACACGTGATGCATTAATGCCTTTCTTAATTTTCTTATGTTTTACTTATATAATTAGTGAGGAAATTTGTATTGTTGACAGTTCTTAGGTTGATGTCGGGAATAAAATGATTATCAGTACTTTGATCTTGGCATTAACCAAGACAGCT
Unaligned ( gi|12 ): TACTTATTTTACTTATTGAAAATTAGATTTGCTTTTCTAGTCATATTTTGAAAATGTACCAGTTGTTTCAAACTTACACGCAGAATGAATGTTTTTCACTCTGACTATGTAAGTTCTTTTGAAGTATATGAAGTTTCATAACAGCATAGACTTGTATTTTATTTTCATAATGTTCCACTGGGAGGATACTTACAGGGACTCGCCACAAATTGACCCTAGATCTTCTATATCTAAACCAAAAGGA
Unaligned ( gi|17 ): TTTGTTTTTAAAACTACAGAAAAAATAGAGAACTCGTGAATTTTGTATGAAACTCAAACGTTGAAATACATTTGATTTATCTCATTTCCTCCACGTTTTTTACTTCATTGACAAGTTCATACAATAAATTAAATTTACTTTGCTTATGGA
Unaligned ( gi|23 ): ACTTATTTTACTTATTCAAAATTAACATTTAGCTTTCATTGTCAATGTACTAGTTGTTAAAAATCATACACCAAAATTGAATATTTTTCAA
Alignments
lowQualScore : 222222 11 3333333333333 11 44444444444444 222222 222222 111111111111 44444444444444444444444444444444444 1111111 11111111111 1111 1111111 222 1111111111 1111111111 111111 1111111 1 1
lowQualScore : 4 0 999999 4 1 22 4 9999999999999 777 55 3 3 11 99 88888 0 55 33 6666 2 99999 2 22222222222222 4 2 444444 333 777777 2 33 77777777 2 66666 2 2 999999999999 444 2 2 44444444444444444444444444444444444 2 555 444 2 2 33 5555555 444 77777777777 33 6666 4444444 33 2 5555 2 2 7777 5 22 000 2 3 4 2222222222 4 44 6666666666 222222 7777777 777 1 1 8 3 0 0
lowQualScore : . . ...... . . .. . ............. ... .. . . .. .. ..... . .. .. .... . ..... . .............. . . ...... ... ...... . .. ........ . ..... . . ............ ... . . ................................... . ... ... . . .. ....... ... ........... .. .... ....... .. . .... . . .... . .. ... . . . .......... . .. .......... ...... ....... ... . . . . . .
lowQualScore : 0 7 666666 4 0 22 4 2222222222222 000 00 6 3 22 22 11111 4 88 77 1111 9 33333 9 00000000000000 6 7 000000 111 777777 4 22 55555555 5 22222 5 5 666666666666 777 7 7 44444444444444444444444444444444444 7 555 777 7 0 77 9999999 444 88888888888 44 6666 4444444 44 5 3333 5 5 8888 7 22 555 3 3 8 5555555555 0 88 2222222222 888888 2222222 222 0 0 0 2 0 0
consensus : TAATACAAACA----C-ATGGA-TGCNTG--GG-TTGATATAAATGTA-CGA--TTT---T--G-GCTTAGTTTGG-TT--GTA--AT----AAGTACAAA-TA-TAAAA----TT-TCT-A---A-AAACTATTAA-------AGGGACTCGT-A--A---TTT-C-TATG-AA--CG-TT--C-----A--AAAGTTG-A-----A-ATA-TAT-------C----AC---CC-CT-CCCT--------A-T---ACA----------A------CT-CTNT-ACA---A-ATTTCCCC--CAC-----TGTT---TNT-G-------AC--TT----AATT------GA--GAAAT-CA----T-G-G----GAATAAATTACATTCNATAC-G-TAAATTGTATTCA-TTTTACGTA------T--AAAA-ACATA--AA------TTTG------GTTTTC---A---TCAT--TTTTGAGAAAGGATTC-TTCATA-ATGTAGC-AGT
Reference ( family-1870 ) : TAATACAAACA----C-ATGGA-TGCNTG--GG-TTGATATAAATGTA-CGA--TTT---T--G-GCTTAGTTTGG-TT--GTA--AT----AAGTACAAA-TA-TAAAA----TT-TCT-A---A-AAACTATTAA-------AGGGACTTGT-A--A---TTT-C-TATG-AA--CG-TT--C-----A--AAAGTTG-A-----A-ATA-TAT-------C----AC---CC-CT-CCCT--------A-T---ACA----------A------CT-CTNT-ACA---A-ATTTTCCC--CAC-----TGTT---TNT-G-------AC--TT----AATT------GA--GAAAT-CA----T-G-G----GAATAAATTACATTCNATAC-G-TAAATTGTATTCA-TTTTACGTA------T--AAAA-ACATA--AA------TTTG------GTTTTC---A---TCAT--TTTTGAGAAAGGATTC-TTCATA-ATGTAGC-AGT
gi|1 : TTAGTCTGA-CT--ATAGCATTACAAATTACATG-TT-TAACA----TT-TCT-ATGCA-AAA---TGCA-------AGGAACTCAT-A--AGAATTT-C-TATG-A---CG-CTTCC-----ACCAAACTTA-A-----A-ATA-AAT-------CTTCCAC---CG-CT-CCC---------------ACC----------A------TTACTAT-ACA---ATATTTCACCGTCAC-----CACG---CCG-G-------AT--TT----AATTACCCATGA--GAAAT-CA----T-T-G----G
gi|10 : ctaagtcaatgtgttatactgtaatacctgatattgttaaggttgttgatactagatagaatgtagataccatgtgaatgcattgttaatgtctttcttaattttttatgctttcccaatgtgtataaattacttgatgaattgtgtattttgtttacagtttgccttacgtttgatgcggaataataatacatttcatcgtactttgagtcctgtcatctcgactaaggccagctttatacatctatatgatgtataacaagagtttggtcggctccattcaaatatctgcactggatctgccagtagtagtattttttgaaatg-ATGGA-TGCTTC--GG-TTGATGT-----TA-T----TTT---T--T-GCTAAGTTTTG-CT--GTA--AT----AGGTACAAA-TG-TAGAA----CTCTTT-G---A-AAA-TGT-----------GGCACTTCT-AC-A---TTTTC-TCTG-A---TA-TT--C-----A--AAAGTGG-ATTTACATGTA-TAT-------T----AC---CC-CC-CCCCCCTCCCCGA-T---AAA----------A------CT-CTTT-ACA---A-AATTTCCC--CAC-----TGTT---TTT-GGGCTTGTAT--TT----AATT------GA--GAAAT-CA----T-G-C----GAATAAATCACATTCCATACGG-TAAATCGTGTTCA-TTTTACATACTTTATT--AAAA-ACATgttggaaaaattcccattttggtcactggaaattgt
gi|13 : aaataaa--G-GCTTAGCTTAG-TT--CTA--AT----TAGTACAAA-TA-GGATT----TT-CCT-G---A-AAAAGAAAAAGAAAATAAGGGAGTTTT-A--AAA-TGT-C-TATG-AA---G-TT--A-----A--AAATTTG-G-----A-ATA-TAC-------C----AC---CA-CT-CTCT--------T-T---GTA----------A------GT-ATAT-ACA---A-AATGTTCC--CAC-----TTTT---TAG-G-------AC--TT----GAT------------GAAT-CA----T-G-G----AAAGAAATGATATTCAATGCAG-TAAATTGGTTTAA-TTTTAttcatagttcccattttcgt
gi|14 : -TT--C-----T--AGAGTCG-A-----A-ATA-TAT-------C----AC---TC-TT-CCCT--------A-T---ACATGTGTA----G------CT-CTTT-ATG---C-AC---CCC--CAAGGGAGTGGA---TG--G-------AC--CT----AAGT------GA--GAAAT-CA----T-G-GTAATGAATAAATTCCATTCTATAT------ATTGTATCAA-TTTCCCCTG------T---AAA-ACGTA--AA------TATA------GCTTt
gi|15 : ttttattcctct-ATGGA-CGCATGTGGG-CTGATCT----GTA-T----TTT---T--G-GTTGAGTTTGA-TC--GTA--A------ACTGCAA-----TAAAAATTCTT-TTT-A---A-AAA--AATGA-------AGG-ACTTGT-AC-AT--TTT-C-TATG------G-T---------------GTTG-------------TTT-------G----AC---CC-CT-CCCT--------A-T---ATA------------------T-CTTT-GCA---A-A-TTCCCC--CAC-----TGTT---T
gi|17 : aagtaaagtaa-TAAAA----CT-ACA-G---A-AAA--AATAG-------AGA-ACTCGTGA--A---TTT-TGTATG-AA---A-CT--C-----A--AACGTTG-A-----A-ATA-CAT---------------------T-TGAT--------T-T---A--------------------T-CTC----------ATTTCCTC--CAC------GTT---TTT-T-------AC--TT----CATT------GA--CAAGTTCA----T-A-C-----AATAAATTAAATTtgg
gi|18 : tttgtttt-A--A---TTT-A-CAAG-GA--TG-CT--C-----A--AAAGCTG-A-----A-ATA-CATGTATTTTC----ATTTACC-CT-CCCT--------A-T---ATA----------A------CT-CGAT-AAA---A-ATTTCCCC--CAA------GTT---TTG-T-------AC--TT----TATC------GA--GAAAT-CA----TAG-G----AAATAAATTACATTCtactttgcttatgga
gi|19 : AATACAAACAACAAT-ATTGA-TGCATG--GGGTTGATATATATAAA-C----------T--G-GTTTAATCTGC-TTT-GTA--AT----TAGTA--GA-TC-TCAAA----TT-CCT-T---A-AA-CTGATGG-------AGGAACTTGT-A--AAA-CCT-C-TGTGTGA--TG-TT--C-----A--AAAGTTG-A-----G-ATA-Tcggtccgatagtact
gi|2 : A--TTT---T--G-ATTTAGTTTGACTT--TTAGCAT----TA--ACATG-TA-T---A----TC-TCT-T---A-AAA--AGTGA-------AAGAA-TCAT-ACGA---TTT-C-T-TG--A--CGCCT--CAAATAA--AAAAATA-A-----A-AT--TAT-------C----A----CG-CT-CCCT--------ATT---GCA---------------------TATAACA---A-GTTTCCCG--CA-------GTTAAATT--------------TT----AATG------GAGGGGAAT-CATTGGT-G-G----GAAC---TTACATTTGGTAT-----AATTGT
gi|20 : attagtgagatacttgatgtgttgcttacataggggttgatttgatcttaagttcaatgtgtatacctattccatgcgtgtaatgttaagcgttgttgatcacgaggtataaatgagattaatgtgatgcatagttaatgttcttttacttttcttatcttccttgtataattgactgaatgaaaattgtcgcatttgtttacagttcttacgttgatgtcggcttaaaaaacatcatccgtactttggagtccgtgtgatctgactaagcgcacagctatagcattagtatgactgtcaggcttgtcggcaccatcaatcatgtctgccatttctgcagtagtgt-G-------GC--TT----AATT------GA--GACAT-CA----T-G-G----GAATTAATTGCATTCCATAT-AATAGATTGTATTCA-TCTTATATG------C--AAAAGAC-TA--AA------TTAT------TTTTCC---A---TCAT--TGTTGGGAAAGGTTTG-TTTAT
gi|21 : AATACCAAAA------ATGAA-TGCATA--CG-TTGATATA-------CGAGTTTT---T--G-GCTTAATTCGG-TT--GTA--AT----AAGAACAAA-TA-TATAA----TT-TCT-A---A-AAATAA--AA-------AAAGACT-----------TTT-C-TATG--A--TG-TT--A-----A--AAtgccagtgtca
gi|22 : ttcactac-----TGTT---CTG-G-------AT--TT----AATG------GA--GAAAT-CA----T-G-G----GAATAAATTACATTGAATACGG-TGGAATGTATTAA-TTTTACtg
gi|3 : aaaaccttcaatactctgtccctatttcgAATA-AAA--------ATGGA-TTCATGCAGG-TTGATACATAT---------TTT---T--G-ATTTGGTTTGG-TT--GTA--AA----AGGTAC---------AAA----TT-TCT-A---ACAAA--AT--A-------AGGAACTTAT-A--T---TTT-G-TATG--A--CG-TT--C-----A--AAAATTA-A-----A-ATA-TAT-------------------------TT--------A-T---TTA----------C------CC-CTAT-ACA---A-ATTTCCCC--CAC------GTT---TG--G-------ACATTT----AATA------TT--GAAAT--A----T-A-T----GAACAA-----------------TAAATTGTGTTCG-CTTTACTTA------T--GAAA-AGATA--AT------TTTG------ATATTC---ACTTTCAT--taatt
gi|4 : ataaCAAA-TA-TAAAC----TT-TCTTA---C-AAA--AT--A-------AGGAACTCAT-A--AGA-TTT-C-TATG-G---CG-CT--C-----A--AAAGTTG-G-------------T-------T----AC---CCTCT-CCCT--------A-T---ATA----------A---------CAAT-ACA---A-A-TTTCCC--CAC------ATT---TG--G-------AC--TTTTACAA-T------GA--AAAAT-TA----T-G-GA---GAATAAACTACATTCTGTTC-GATGAATTGTACTCA-TTTTACTTT------T--GAAA-AGATA--AA------TTAG------GATTTCTTTG---TCATAATTTTAAAAAaactgaaaattgtcgttataacataaacaaaatgcacatttttcacaatttctgcgttttttaacctacatggtatttcgtctcttggaattttcatagcagtaaaaatcgataacttaattttatttatttatttacattgtattgggagtatactaacagggggtcgtcacgaattgatcttccctcttctctatttaca
gi|5 : TAATATAAACA----CCATGGA-TGCTTG--GA-TTGATATAAATGTAGCAA--TTTCTAT--G-GCTTATTTTGT-TTG-GTA--AC----AAGTATAAACTACTAAAA----TT-GAT-----A-AAACTATTAA-------AGGGACGTG--A--A---TTT-T-TATG-AAT-CG-TT--C--------AAAGTT--------A-ATA-TAT-------C----AC---CC-CT-CCAT--------A-TAGCACA----------ATCATGTCA-CCTT-GCACCCG-ATATTCCC--GAT-----TGTT---TAT-G-------AC--TTAAA-AATTGG----GA--GAAAT-CG----T-G-G----GAATAA--TAGATTCAATAC-G-TAAATTGT-TAAA-TATTATGTA------TAAAAAA-ACATACCCA------TTTG------GTTTTC---A---TCAT--TTTT-AGAAAGGATTC-TTCATA-ATGTAGC-AGTtgtaataattgtagtaaatgcatttttccccacaatgtccagtgccggtacattattttggactatatatggtatttcgtctctcggactttttttttatttggtgtatactgacaggggttcgccacgaaatgaccctctatctgctatatttacatacaaatagagga
gi|6 : cTAATATAAACA----C-ATGGA-TGCTTG--GA-TTGATATAAATGTA-CAA--TTT---T--G-GCTTAGTTTTG-TT--GTA--AC----AAGTATAAA-TA-TAAAA----TT-TAT-A---A-AAACTATTAA-------AGGGACGTGT-A--A---TTT-T-TATG-AAT-CG-TT--C-----A--AAAGTTG-A-----A-ATATTAT-------C----AC---CC-CT-CCAT--------A-T---ACACAATCATGTCA------CT-CTAC-ACC---A-GTTTTCCC--GAT-----TGTT---TAT-G-------AC--TTAA--AATT------GA--GAAAT-CG----T-G-G----GAATAAATTACATTCAATAC-G-TAAATTGTAAATATTTTTATGTA------T--AAAA-ACATA--CA------TTTG------GTTTTC---A---TCAT--TTTTGAGAAAGGATTC-TTCATATATGTAGC-AGTtagggtcaa
gi|7 : TAATATAAACA----C-ATGGA-TGCTTG--GA-TTGATATAAATGTA-CAA--TTT---T--GTGCTTAGTTTTG-TTTGGTA--AC----AAGTATAA--TA-TAAAA----TT-TAT-A---A-AAACTATTAA-------AGGGACGTGT-A--A---TTT-T-TATG-AATGCG-TT--C-----A--AAAGTTGAA-----A-ATA-TAT-------C----AC---CC-CT-CCAT--------A-T---ACACAATCATGTCA------CT-CTC--ACC---A-GTTTTCCC--GAT-----TGTT---TAT-G-------AC--TTAA--AATTA-----GA--GAAAT-CG----T-G-G----GAATAA--TACATTCAATAC-G-TAAATTGTAAATA-TTTTATGTA------T--AAAA-A-ACA--AC------TTTG------GTTTTC---A---TCA---TTTTGAGAAAGGATTC-TTCATA-ATGTAGC-AGT
gi|8 : ATACAAACAAAA-C-AAGGAATGCATG--GG-TTGATATAAAGAT--TGA--TTT---TTTG-GCTAAGTTTGG-CT--GTA--AT----A----TAAA-TG-TAT------TT-TCC-A---A-AAACT--TA---------GCGACATGT-A--AAT-TTT-T-TATG-A---TG-TT--C-----T--AAAGTGT-A-----A-ATG-TAT-------T----GC---CC-CTTCCCT--------A-T---ATA----------A------TT-CTTT-ATA---A-ATTTTCCC--CAT-----TGTT---TTTGG-------AC--TT----TATA------GA--GAAAT-CA----T-G-G----GGATAATTTGCATCCA-----G-TAAATTATATTCA-ATTTACATA------T--TAAA-AAA-A--AATCCCACTTTGATATTTATTTTC---A---TCGA--TTTTGA-AAAGAATTTGTT------TGTAGCTAGT
gi|9 : g---TTT-C-TATG-AA---G-CT--C-----A--AAAGTTG-A-----A-ATA-CAT-------TT---AT---TA-AT-T--T--------A-T----CG----------C------CT-CCT--------A-ATTACCTG--CAC------ATT---TTC-G-------AC--TT----TATT------GA--CAAAT-TC----T-GTG----G-------TACATTTCGTAC-AATAAATTTCATTTA-TTTTACTTA------T--GGAA-GC-TAC-AA------TTTG------GTTTTC---ATT-TCAT--TTgt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): ATTGGCTGAGATGAACTTGTATATTGATTGAATATGGGGTTATTATGGCTAAGTCAATGTGTATACTAGTCACACATGTTAAAAGTTGTTGATACTAGTATAGAGTATAAACACACGTGATGCATTAATGCCTTTCTTAATTTTCTTATGTTTTACTTATATAATTAGTGAGGAAATTTGTATTGTTGACAGTTCTTAGGTTGATGTCGGGAATAAAATGATTATCAGTACTTTGATCTTGGCATTAACCAAGACAGCT
Unaligned ( gi|12 ): TACTTATTTTACTTATTGAAAATTAGATTTGCTTTTCTAGTCATATTTTGAAAATGTACCAGTTGTTTCAAACTTACACGCAGAATGAATGTTTTTCACTCTGACTATGTAAGTTCTTTTGAAGTATATGAAGTTTCATAACAGCATAGACTTGTATTTTATTTTCATAATGTTCCACTGGGAGGATACTTACAGGGACTCGCCACAAATTGACCCTAGATCTTCTATATCTAAACCAAAAGGA
Unaligned ( gi|16 ): ATTTTCCATTGAATTCAAAAGTTGAAATACTATTTATGAATTCATCGCCTTTTATAATTTCTTACGTTTTCGACTTTATATGAACAAATTTTTTAGTCATTTCGCTACAATATAATTGCATTAAACTACCATATGAAACATAAAAATTGGGTTGTCTTT
Unaligned ( gi|23 ): ACTTATTTTACTTATTCAAAATTAACATTTAGCTTTCATTGTCAATGTACTAGTTGTTAAAAATCATACACCAAAATTGAATATTTTTCAA