lowQualScore : 22222 5555555555555555555555555555555555555555555555 1
lowQualScore : 1 44 11111 0 55555 2 0000000000000000000000000000000000000000000000 1 1 444 33 3 8
lowQualScore : . .. ..... . ..... . .............................................. . . ... .. . .
lowQualScore : 4 22 77777 1 99999 4 0000000000000000000000000000000000000000000000 1 1 777 77 1 8
consensus : GGGCTTACAT--AGG-CATTGCGCCTGCTGCCCG-----ATC-CCATTCG-C-GTATGT----------T-----T---------TA--CGTGAATAAA---A--TATTG-TTTAAATTAAAAT
Reference ( gi|4 ) : GGGCTTACAT--AGG-TATTGCGCCTGCTGCCCA-----ATC-CAATTTG-T-GTATGT----------T-----T---------TA--CATGAATACA---A--TATTG-TTTAAATTCAAAT
gi|1 : GGGCTTACAT--ATG-CATTGCGTCTGCTGCTTA-----CTC-CAATTTA-T-GTATGTATAA------T-----TGTTA-----TA--CATG--TACATGTA--TAT
gi|3 : ggGGGCTTACAT--AGG-CATCGTGCCTGCTGCCCA-----AAC-T-ATTTGAT-GTATGTA---------TAATTGT---------TA--TATAAATGCC---A--Tatacataaataaaata
gi|5 : GGGCTAAAAT--AGG-T--TGTACCTGCTGCCCA-----ATC-CCACGCG-T-GTTTGTCAA-------T-----A---------TA--CATG----TA---A--TATTG-TTTAAATTtcaaataaaaaa
gi|9 : ggaGGATTTCTAT--AGG-CA--GTGCCTGCTGTCTG-----ATC-C----TG-T--TGTGA----------T-----T-------------CATCAAAACA---AAATATTG-TTTAAATTAAAtta
gi|18 : aggGGGCTTATAT--AGGCTAT---GCCTGTTGTCCA-----ATC-C-ATTTG-----ATTT----------T-----T---------T
gi|14 : atgggagaGGGCTATCAT--AGG-CAATGC--CTGCTG-CCG-----ATC-C-ATTCA-C-ATAT-T----------T-----T---------T----GTGAATAAA---A--TATT--TTAAAATTtta
gi|12 : aGGGCTAATAT--AGGGCAT---GCCTGC-GTCCAGATCCATT-CAACATA-T-TTATAT----------T--------------------GTGAATAAA---A--TATTG-TGTATAT
gi|11 : GGGCTAATAT--AAT-GA--GCGCCTGCTGCC-------ATC-CCAATGG-C-ATTTTT----------C-----T---------TAATTGTGAATAAG---A--TATTA-TTT
gi|17 : agCCTACATGTAGG-CATCGCGCCTGTTGCCCA-----ATC-CAATTAA-T-GTATGC----------T-----C---------TA--ta
gi|13 : ataggcttaTTACAT--AG---ACTTTTCCTGCTGCTTA-----ATG-CAAT------G-ATGT----------T-----T---------TT--TCTTAATAAA---A--TACTG-TTTTAAT--AAATt
gi|16 : tACAT--AGG-C-TTGC-CCTGCTGCCTA-----ATC-CTACT-A-T-GT---T----------T-----T---------TG--CAT-AATAAA---A--TAATG-TTTAAATTAAAAaaa
gi|2 : AT--AGG-CAATGCGTCTGTGGACCA-----ATC-CTATTTA-G-GTATGTGTATCTTCTAT-----TAGAACAACATA--CATGAATGAA---A--TATTG-TTCAAA-TCAAAT
gi|6 : tAT--AG---ACTGTGTCTGCTGCTCA-----ATT-CCACTCC-T-GCGT-T----------T-----T---------TA--AA--AATA-A---A--TATTA-TCTAAATt
gi|7 : gagagtgttaaaagGTCTGCTGCCAG-----ATC-TCATTCA-C-ATATTT----------C-----T---------TA---GTGAATAAA---A--TATTG-TTTAAAaaa
gi|20 : gagagggctatgataaacaatCCTGCTGCCCG-----ATC-CCATTAA-C-ATATTT----------C-----T---------TT--CA-GAATAAA---A--TATTG-TTTAAATa
gi|15 : aCTGCTGCCCG-----ATC-TCATTCA-T---ATTT----------T-----T---------TA-------ATAAA---A--TATTG-TTTAA
gi|19 : agaggacaaaaaatggcagttTGCTGCCCG-----ATCGCCATTCA-CCATATTT----------C-----T---------TT--TGTGAATAAA---A--TATTGTTTTAAAcaa
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): GAGAGGGCTAAGATAAGCTGGACCTGTTGATCATTCCCATTCACATGTTTGTGAAAAAGAATATTGATTAATTTTT
Unaligned ( gi|10 ): GAGAGGGCTAGAATAAGCTGTGCCTGCCGCCCGATCCCATTCAGATTTTTTTCAAATAAAATTTTGTATAAAT
Unaligned ( gi|21 ): CAGAAAGGACATATATAAGCAGAGCCTGCAGTCCGATCCTGTTATGATT
Alignments
lowQualScore : 111 444444444444444444444444444444444444444444
lowQualScore : 3 1 33 2 777 0 2 2 333333333333333333333333333333333333333333 0 5 88888 2
lowQualScore : . . .. . ... . . . .......................................... . . ..... .
lowQualScore : 0 1 44 5 777 7 0 8 999999999999999999999999999999999999999999 8 0 88888 5
consensus : GGGCTNACAT--AGG-CATTGCGCCTGCTGCCCGATC-CCATTC--G-C-GTATGT----------TT---------T-A--C-GTGAATA-A-----AATATTG-TTTAAATTAAAAT
Reference ( family-1783 ) : GGGCTTACAT--AGG-CATTGCGCCTGCTGCCCGATC-CCATTC--G-C-GTATGT----------TT---------T-A--C-GTGAATA-A-----AATATTG-TTTAAATTAAAAT
gi|1 : GGGCTTACAT--ATG-CATTGCGTCTGCTGCTTACTC-CAATTT--A-T-GTATGT----------
gi|10 : ggGGGCTAGAAT--AAG-C--TGTGCCTGCCGCCCGATC-CCATTC--A---G-ATTT----------TT---------T-T--C---AAATA-A-----AATTTTG-TATAAATataattgttatacatgtacatgtatatatacataaataaaata
gi|11 : gagaGGGCTAATAT--AAT-GA--GCGCCTGCTGCC--ATC-CCAATG--G-C-ATTTTT----------CT---------T-AATT-GTGAATA-A-----GATATTA-TTT
gi|12 : agGGGCTAATAT--AGGGCAT---GCCTGCGTCCAGATC-C-ATTC--AAC-ATAT-T----------TA---------T-A--TTGTGAATA-A-----AATATTG-TGTATATta
gi|14 : GGGCTATCAT--AGG-CAATGC--CTGCTGCC-GATC-C-ATTC--A-C-ATAT-T----------TT---------T------GTGAATA-A-----AATATT--TTAAAATT
gi|15 : aCTGCTGCCCGATC-TCATTC--------ATAT----------TT---------T-------TTAATA-A-----AATATTG-TTTAA
gi|16 : agaggacaaaaaatggcagttACAT--AGG-C-TTGC-CCTGCTGCCTAATC-CTACT---------ATGT----------TT---------TTG--C-AT-AATA-A-----AATAATG-TTTAAATTAAAAcaa
gi|17 : CCTACATGTAGG-CATCGCGCCTGTTGCCCAATC-CAATTA--A-T-GTATGC----------TC---------T-A--
gi|18 : ataggcttaGGGCTTATAT--AGG-C--TATGCCTGTTGTCCAAT--CCATTT--G-----ATTT----------TT---------T-t
gi|19 : atgggagaTGCTGCCCGATCGCCATTC--A-CCATATTT----------CT---------T-T--T-GTGAATA-A-----AATATTGTTTTAAAtta
gi|2 : AT--AGG-CAATGCGTCTGTGGACCAATC-CTATTT--A-G-GTATGTGTATCTTCTATTAGAACAACAT-A--C-ATGAATG-A-----AATATTG-TTCAAATCAAA
gi|20 : tCCTGCTGCCCGATC-CCATTA--A-C-ATATTT----------CT---------T-T--C-A-GAATA-A-----AATATTG-TTTAAATtt
gi|21 : aGGACATATAT--AAG-CA--GAGCCTGCAGTCCGATC-CTGTT
gi|3 : cagaaaGGGCTTACAT--AGG-CATCGTGCCTGCTGCCCAA-A-CTATTT--GAT-GTATGT----------AT---------A-AT-T-GTT-ATATA-----AATGCCA-TTCAAATAAAAAatgatt
gi|4 : GGGCTTACAT--AGG-TATTGCGCCTGCTGCCCAATC-CAATTT--G-T-GTATGT----------TT---------T-A--C-ATGAATA-C-----AATATTG-TTTAAATTCAAATa
gi|5 : GGGCTAAAAT--AGG---TTGTACCTGCTGCCCAATC-CCA--C--G-C-G--TGT----------TT----------------GTCAATATACATGTAATATTG-TTTAAATT
gi|6 : ggaAT--AGA-C--TGTGTCTGCTGCTCAATT-CCACTCCTG-C-GT---T----------TT---------T-A--A---AAAT--A-----AATATTA-TCTAAA-TAAAtta
gi|7 : gagagtgttaaaagGTCTGCTGCCAGATC-TCATTC--A-C-ATATTT----------CT---------T-A----GTGAATA-A-----AATATTG-TTTAAA
gi|8 : gagagggctatgataaacaatGGGCTAAGAT--AAG-C--TGGACCTGTTGATCATTC-CCATTC--A-C---ATGT----------TT----------------GTGAAAA-AG----AATATTG-ATTAATTTa
gi|9 : gagaGGATTTCTAT--AGG-CA--GTGCCTGCTGTCTGATC-CTGTT---------GTGA----------TT---------C-A--T-CAAAACA-A-----AATATTG-TTTAAATTAAAtt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTTACATAGACTTTTCCTGCTGCTTAATGCAATGATGTTTTTTCTTAATAAAATACTGTTTTAATAAATAAA
Alignments
lowQualScore : 11 444444444444444444444444444444444444444444
lowQualScore : 1 1 33 2 33 2 1 2 3 333333333333333333333333333333333333333333 0 5 88888 2
lowQualScore : . . .. . .. . . . . .......................................... . . ..... .
lowQualScore : 0 0 77 7 22 1 0 2 3 777777777777777777777777777777777777777777 8 0 88888 5
consensus : GGGCTAACAT--AGG-CATTGCGCCTGCTGCCCGATC-CCATTC--G-C-GTATGT----------TT---------T-A--C-GTGAATA-A-----AATATTG-TTTAAATTAAAAT
Reference ( family-1783 ) : GGGCTNACAT--AGG-CATTGCGCCTGCTGCCCGATC-CCATTC--G-C-GTATGT----------TT---------T-A--C-GTGAATA-A-----AATATTG-TTTAAATTAAAAT
gi|1 : GGGCTTACAT--ATG-CATTGCGTCTGCTGCTTACTC-CAATTT--A-T-GTATGT----------
gi|10 : ggGGGCTAGAAT--AAG-C--TGTGCCTGCCGCCCGATC-CCATTC--A---G-ATTT----------TT---------T-T--C---AAATA-A-----AATTTTG-TATAAATataattgttatacatgtacatgtatatatacataaataaaata
gi|11 : gagaGGGCTAATAT--AAT-GA--GCGCCTGCTGCC--ATC-CCAATG--G-C-ATTTTT----------CT---------T-AATT-GTGAATA-A-----GATATTA-TTT
gi|12 : agGGGCTAATAT--AGGGCAT---GCCTGCGTCCAGATC-C-ATTC--AAC-ATAT-T----------TA---------T-A--TTGTGAATA-A-----AATATTG-TGTATATta
gi|14 : GGGCTATCAT--AGG-CAATGC--CTGCTGCC-GATC-C-ATTC--A-C-ATAT-T----------TT---------T------GTGAATA-A-----AATATT--TTAAAATT
gi|15 : aCTGCTGCCCGATC-TCATTC--------ATAT----------TT---------T-------TTAATA-A-----AATATTG-TTTAA
gi|16 : agaggacaaaaaatggcagttACAT--AGG-C-TTGC-CCTGCTGCCTAATC-CTACT---------ATGT----------TT---------TTG--C-AT-AATA-A-----AATAATG-TTTAAATTAAAAcaa
gi|17 : CCTACATGTAGG-CATCGCGCCTGTTGCCCAATC-CAATTA--A-T-GTATGC----------TC---------T-A--
gi|19 : ataggcttaTGCTGCCCGATCGCCATTC--A-CCATATTT----------CT---------T-T--T-GTGAATA-A-----AATATTGTTTTAAAt
gi|2 : AT--AGG-CAATGCGTCTGTGGACCAATC-CTATTT--A-G-GTATGTGTATCTTCTATTAGAACAACAT-A--C-ATGAATG-A-----AATATTG-TTCAAATCAAA
gi|20 : tCCTGCTGCCCGATC-CCATTA--A-C-ATATTT----------CT---------T-T--C-A-GAATA-A-----AATATTG-TTTAAATtt
gi|3 : aGGGCTTACAT--AGG-CATCGTGCCTGCTGCCCAA-A-CTATTT--GAT-GTATGT----------AT---------A-AT-T-GTT-ATATA-----AATGCCA-TTCAAATAAAAA
gi|4 : GGGCTTACAT--AGG-TATTGCGCCTGCTGCCCAATC-CAATTT--G-T-GTATGT----------TT---------T-A--C-ATGAATA-C-----AATATTG-TTTAAATTCAAATa
gi|5 : GGGCTAAAAT--AGG---TTGTACCTGCTGCCCAATC-CCA--C--G-C-G--TGT----------TT----------------GTCAATATACATGTAATATTG-TTTAAATT
gi|6 : ggaAT--AGA-C--TGTGTCTGCTGCTCAATT-CCACTCCTG-C-GT---T----------TT---------T-A--A---AAAT--A-----AATATTA-TCTAAA-TAAAtta
gi|7 : gagagtgttaaaagGGGCTATGAT--AAA-CAATGT--CTGCTGCCAGATC-TCATTC--A-C-ATATTT----------CT---------T-A----GTGAATA-A-----AATATTG-TTTAAA
gi|8 : gagaGGGCTAAGAT--AAG-C--TGGACCTGTTGATCATTC-CCATTC--A-C---ATGT----------TT----------------GTGAAAA-AG----AATATTG-ATTAATTTa
gi|9 : gagaAT--AGG-CA--GTGCCTGCTGTCTGATC-CTGTT---------GTGA----------TT---------C-A--T-CAAAACA-A-----AATATTG-TTTAAATTAAAtt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTTACATAGACTTTTCCTGCTGCTTAATGCAATGATGTTTTTTCTTAATAAAATACTGTTTTAATAAATAAA
Unaligned ( gi|18 ): ATGGGAGAGGGCTTATATAGGCTATGCCTGTTGTCCAATCCATTTGATTTTTTTTA
Unaligned ( gi|21 ): CAGAAAGGACATATATAAGCAGAGCCTGCAGTCCGATCCTGTTATGATT
Alignments
lowQualScore : 11 444444444444444444444444444444444444444444
lowQualScore : 3 2 33 2 1 2 3 333333333333333333333333333333333333333333 0 5 88888 2
lowQualScore : . . .. . . . . .......................................... . . ..... .
lowQualScore : 1 7 22 1 0 2 3 777777777777777777777777777777777777777777 8 0 88888 5
consensus : GGGCTAANATAGG-CATTGCGCCTGCTGCCCGATC-CCATTC--G-C-GTATGT----------TT---------T-A--C-GTGAATA-A-----AATATTG-TTTAAATTAAAAT
Reference ( family-1783 ) : GGGCTAACATAGG-CATTGCGCCTGCTGCCCGATC-CCATTC--G-C-GTATGT----------TT---------T-A--C-GTGAATA-A-----AATATTG-TTTAAATTAAAAT
gi|1 : GGGCTTACATATG-CATTGCGTCTGCTGCTTACTC-CAATTT--A-T-GTATGT----------
gi|10 : ggGGGCTAGAATAAG-C--TGTGCCTGCCGCCCGATC-CCATTC--A---G-ATTT----------TT---------T-T--C---AAATA-A-----AATTTTG-TATAAATataattgttatacatgtacatgtatatatacataaataaaata
gi|11 : gagaGGGCTAATATAAT-GA--GCGCCTGCTGCC--ATC-CCAATG--G-C-ATTTTT----------CT---------T-AATT-GTGAATA-A-----GATATTA-TTT
gi|12 : agGGGCTAATATAGGGCAT---GCCTGCGTCCAGATC-C-ATTC--AAC-ATAT-T----------TA---------T-A--TTGTGAATA-A-----AATATTG-TGTATATta
gi|14 : GGGCTATCATAGG-CAATGC--CTGCTGCC-GATC-C-ATTC--A-C-ATAT-T----------TT---------T------GTGAATA-A-----AATATT--TTAAAATT
gi|15 : aCTGCTGCCCGATC-TCATTC--------ATAT----------TT---------T-------TTAATA-A-----AATATTG-TTTAA
gi|16 : agaggacaaaaaatggcagttACATAGG-C-TTGC-CCTGCTGCCTAATC-CTACT---------ATGT----------TT---------TTG--C-AT-AATA-A-----AATAATG-TTTAAATTAAAAcaa
gi|17 : TAGG-CATCGCGCCTGTTGCCCAATC-CAATTA--A-T-GTATGC----------TC---------T-A--
gi|19 : ataggcttacctacatgTGCTGCCCGATCGCCATTC--A-CCATATTT----------CT---------T-T--T-GTGAATA-A-----AATATTGTTTTAAAt
gi|2 : ATAGG-CAATGCGTCTGTGGACCAATC-CTATTT--A-G-GTATGTGTATCTTCTATTAGAACAACAT-A--C-ATGAATG-A-----AATATTG-TTCAAATCAAA
gi|20 : tCCTGCTGCCCGATC-CCATTA--A-C-ATATTT----------CT---------T-T--C-A-GAATA-A-----AATATTG-TTTAAATtt
gi|3 : aGGGCTTACATAGG-CATCGTGCCTGCTGCCCAA-A-CTATTT--GAT-GTATGT----------AT---------A-AT-T-GTT-ATATA-----AATGCCA-TTCAAATAAAAA
gi|4 : GGGCTTACATAGG-TATTGCGCCTGCTGCCCAATC-CAATTT--G-T-GTATGT----------TT---------T-A--C-ATGAATA-C-----AATATTG-TTTAAATTCAAATa
gi|5 : GGGCTAAAATAGG---TTGTACCTGCTGCCCAATC-CCA--C--G-C-G--TGT----------TT----------------GTCAATATACATGTAATATTG-TTTAAATT
gi|6 : ggaAAGATAGA-C--TGTGTCTGCTGCTCAATT-CCACTCCTG-C-GT---T----------TT---------T-A--A---AAAT--A-----AATATTA-TCTAAA-TAAAtta
gi|7 : gagagtgttaaGGGCTATGATAAA-CAATGT--CTGCTGCCAGATC-TCATTC--A-C-ATATTT----------CT---------T-A----GTGAATA-A-----AATATTG-TTTAAA
gi|8 : gagaGGGCTAAGATAAG-C--TGGACCTGTTGATCATTC-CCATTC--A-C---ATGT----------TT----------------GTGAAAA-AG----AATATTG-ATTAATTTa
gi|9 : gagaATAGG-CA--GTGCCTGCTGTCTGATC-CTGTT---------GTGA----------TT---------C-A--T-CAAAACA-A-----AATATTG-TTTAAATTAAAtt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTTACATAGACTTTTCCTGCTGCTTAATGCAATGATGTTTTTTCTTAATAAAATACTGTTTTAATAAATAAA
Unaligned ( gi|18 ): ATGGGAGAGGGCTTATATAGGCTATGCCTGTTGTCCAATCCATTTGATTTTTTTTA
Unaligned ( gi|21 ): CAGAAAGGACATATATAAGCAGAGCCTGCAGTCCGATCCTGTTATGATT
Alignments
lowQualScore : 11 444444444444444444444444444444444444444444
lowQualScore : 2 1 2 22 33 1 2 3 333333333333333333333333333333333333333333 0 5 88888 2
lowQualScore : . . . .. .. . . . .......................................... . . ..... .
lowQualScore : 9 0 5 88 66 0 2 3 777777777777777777777777777777777777777777 8 0 88888 5
consensus : GGGCTA-ANATAGG-CATTGCGCCTGCTGCCCGATC-CCATTC--G-C-GTATGT----------TT---------T-A--C-GTGAATA-A-----AATATTG-TTTAAATTAAAAT
Reference ( family-1783 ) : GGGCTA-ANATAGG-CATTGCGCCTGCTGCCCGATC-CCATTC--G-C-GTATGT----------TT---------T-A--C-GTGAATA-A-----AATATTG-TTTAAATTAAAAT
gi|1 : GGGCTT-ACATATG-CATTGCGTCTGCTGCTTACTC-CAATTT--A-T-GTATGT----------
gi|10 : ggGGGCTA-GAATAAG-C--TGTGCCTGCCGCCCGATC-CCATTC--A---G-ATTT----------TT---------T-T--C---AAATA-A-----AATTTTG-TATAAATataattgttatacatgtacatgtatatatacataaataaaata
gi|11 : gagaGGGCTA-ATATAAT-GA--GCGCCTGCTGCC--ATC-CCAATG--G-C-ATTTTT----------CT---------T-AATT-GTGAATA-A-----GATATTA-TTT
gi|12 : agGGGCTA-ATATAGGGCAT---GCCTGCGTCCAGATC-C-ATTC--AAC-ATAT-T----------TA---------T-A--TTGTGAATA-A-----AATATTG-TGTATATta
gi|14 : GGGCTA-TCATAGG-CAATGC--CTGCTGCC-GATC-C-ATTC--A-C-ATAT-T----------TT---------T------GTGAATA-A-----AATATT--TTAAAATT
gi|15 : aA-AAAT-GG-CAGT---TCTGCTGCCCGATC-TCATTC--------ATAT----------TT---------T-------TTAATA-A-----AATATTG-TTTAA
gi|16 : agaggacaa-ACATAGG-C-TTGC-CCTGCTGCCTAATC-CTACT---------ATGT----------TT---------TTG--C-AT-AATA-A-----AATAATG-TTTAAATTAAAAcaa
gi|17 : CTACATGTAGG-CATCGCGCCTGTTGCCCAATC-CAATTA--A-T-GTATGC----------TC---------T-A--
gi|19 : ataggcttacTGCTGCCCGATCGCCATTC--A-CCATATTT----------CT---------T-T--T-GTGAATA-A-----AATATTGTTTTAAAt
gi|2 : ATAGG-CAATGCGTCTGTGGACCAATC-CTATTT--A-G-GTATGTGTATCTTCTATTAGAACAACAT-A--C-ATGAATG-A-----AATATTG-TTCAAATCAAA
gi|20 : tCCTGCTGCCCGATC-CCATTA--A-C-ATATTT----------CT---------T-T--C-A-GAATA-A-----AATATTG-TTTAAATtt
gi|3 : aGGGCTT-ACATAGG-CATCGTGCCTGCTGCCCAA-A-CTATTT--GAT-GTATGT----------AT---------A-AT-T-GTT-ATATA-----AATGCCA-TTCAAATAAAAA
gi|4 : GGGCTT-ACATAGG-TATTGCGCCTGCTGCCCAATC-CAATTT--G-T-GTATGT----------TT---------T-A--C-ATGAATA-C-----AATATTG-TTTAAATTCAAATa
gi|5 : GGGCTA-AAATAGG---TTGTACCTGCTGCCCAATC-CCA--C--G-C-G--TGT----------TT----------------GTCAATATACATGTAATATTG-TTTAAATT
gi|6 : ggaA-AGATAGA-C--TGTGTCTGCTGCTCAATT-CCACTCCTG-C-GT---T----------TT---------T-A--A---AAAT--A-----AATATTA-TCTAAA-TAAAtta
gi|7 : gagagtgttaaGGGCTA-TGATAAA-CAATGT--CTGCTGCCAGATC-TCATTC--A-C-ATATTT----------CT---------T-A----GTGAATA-A-----AATATTG-TTTAAA
gi|8 : gagaGGGCTA-AGATAAG-C--TGGACCTGTTGATCATTC-CCATTC--A-C---ATGT----------TT----------------GTGAAAA-AG----AATATTG-ATTAATTTa
gi|9 : gagaATAGG-CA--GTGCCTGCTGTCTGATC-CTGTT---------GTGA----------TT---------C-A--T-CAAAACA-A-----AATATTG-TTTAAATTAAAtt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTTACATAGACTTTTCCTGCTGCTTAATGCAATGATGTTTTTTCTTAATAAAATACTGTTTTAATAAATAAA
Unaligned ( gi|18 ): ATGGGAGAGGGCTTATATAGGCTATGCCTGTTGTCCAATCCATTTGATTTTTTTTA
Unaligned ( gi|21 ): CAGAAAGGACATATATAAGCAGAGCCTGCAGTCCGATCCTGTTATGATT
Alignments
lowQualScore : 11 444444444444444444444444444444444444444444
lowQualScore : 2 1 2 22 33 1 2 3 333333333333333333333333333333333333333333 0 5 88888 2
lowQualScore : . . . .. .. . . . .......................................... . . ..... .
lowQualScore : 9 0 5 88 66 0 2 3 777777777777777777777777777777777777777777 8 0 88888 5
consensus : GGGCTA-ANATAGG-CATTGCGCCTGCTGCCCGATC-CCATTC--G-C-GTATGT----------TT---------T-A--C-GTGAATA-A-----AATATTG-TTTAAATTAAAAT
Reference ( family-1783 ) : GGGCTA-ANATAGG-CATTGCGCCTGCTGCCCGATC-CCATTC--G-C-GTATGT----------TT---------T-A--C-GTGAATA-A-----AATATTG-TTTAAATTAAAAT
gi|1 : GGGCTT-ACATATG-CATTGCGTCTGCTGCTTACTC-CAATTT--A-T-GTATGT----------
gi|10 : ggGGGCTA-GAATAAG-C--TGTGCCTGCCGCCCGATC-CCATTC--A---G-ATTT----------TT---------T-T--C---AAATA-A-----AATTTTG-TATAAATataattgttatacatgtacatgtatatatacataaataaaata
gi|11 : gagaGGGCTA-ATATAAT-GA--GCGCCTGCTGCC--ATC-CCAATG--G-C-ATTTTT----------CT---------T-AATT-GTGAATA-A-----GATATTA-TTT
gi|12 : agGGGCTA-ATATAGGGCAT---GCCTGCGTCCAGATC-C-ATTC--AAC-ATAT-T----------TA---------T-A--TTGTGAATA-A-----AATATTG-TGTATATta
gi|14 : GGGCTA-TCATAGG-CAATGC--CTGCTGCC-GATC-C-ATTC--A-C-ATAT-T----------TT---------T------GTGAATA-A-----AATATT--TTAAAATT
gi|15 : aA-AAAT-GG-CAGT---TCTGCTGCCCGATC-TCATTC--------ATAT----------TT---------T-------TTAATA-A-----AATATTG-TTTAA
gi|16 : agaggacaa-ACATAGG-C-TTGC-CCTGCTGCCTAATC-CTACT---------ATGT----------TT---------TTG--C-AT-AATA-A-----AATAATG-TTTAAATTAAAAcaa
gi|17 : CTACATGTAGG-CATCGCGCCTGTTGCCCAATC-CAATTA--A-T-GTATGC----------TC---------T-A--
gi|19 : ataggcttacTGCTGCCCGATCGCCATTC--A-CCATATTT----------CT---------T-T--T-GTGAATA-A-----AATATTGTTTTAAAt
gi|2 : ATAGG-CAATGCGTCTGTGGACCAATC-CTATTT--A-G-GTATGTGTATCTTCTATTAGAACAACAT-A--C-ATGAATG-A-----AATATTG-TTCAAATCAAA
gi|20 : tCCTGCTGCCCGATC-CCATTA--A-C-ATATTT----------CT---------T-T--C-A-GAATA-A-----AATATTG-TTTAAATtt
gi|3 : aGGGCTT-ACATAGG-CATCGTGCCTGCTGCCCAA-A-CTATTT--GAT-GTATGT----------AT---------A-AT-T-GTT-ATATA-----AATGCCA-TTCAAATAAAAA
gi|4 : GGGCTT-ACATAGG-TATTGCGCCTGCTGCCCAATC-CAATTT--G-T-GTATGT----------TT---------T-A--C-ATGAATA-C-----AATATTG-TTTAAATTCAAATa
gi|5 : GGGCTA-AAATAGG---TTGTACCTGCTGCCCAATC-CCA--C--G-C-G--TGT----------TT----------------GTCAATATACATGTAATATTG-TTTAAATT
gi|6 : ggaA-AGATAGA-C--TGTGTCTGCTGCTCAATT-CCACTCCTG-C-GT---T----------TT---------T-A--A---AAAT--A-----AATATTA-TCTAAA-TAAAtta
gi|7 : gagagtgttaaGGGCTA-TGATAAA-CAATGT--CTGCTGCCAGATC-TCATTC--A-C-ATATTT----------CT---------T-A----GTGAATA-A-----AATATTG-TTTAAA
gi|8 : gagaGGGCTA-AGATAAG-C--TGGACCTGTTGATCATTC-CCATTC--A-C---ATGT----------TT----------------GTGAAAA-AG----AATATTG-ATTAATTTa
gi|9 : gagaATAGG-CA--GTGCCTGCTGTCTGATC-CTGTT---------GTGA----------TT---------C-A--T-CAAAACA-A-----AATATTG-TTTAAATTAAAtt
blockSeqs : C A G AT TG C G C TAGGTATGTGTATCTTCTATTAGAACAACATACA T CATGT T
blockSeqs : . T . AA CG A . C GGCATTTTTCTTAATTG T G .
blockSeqs : . T . AG CG C . C TGATGTATGTATAATTG . . .
blockSeqs : . C . AT CG T . T CAACATATTTATATTG . . .
blockSeqs : . A . AA TG C . A CACCATATTTCTTTTG . . .
blockSeqs : . C . AT CG C . C AACATATTTCTTTCA . . .
blockSeqs : . T . AT TA C . T TGTGTATGTTTTACA . . .
blockSeqs : . C . AA TG C . C CACATATTTCTTAG . . .
blockSeqs : . C . A GA C . T CCTGCGTTTTTAA . . .
blockSeqs : . A . T TG C . A CACATATTTTTG . . .
blockSeqs : . G . T G C . C ATGTTTTTGCA . . .
blockSeqs : . G . A C C . C CGCGTGTTTG . . .
blockSeqs : . G . . C A . C CACATGTTTG . . .
blockSeqs : . . T C . C GTGATTCATC . . .
blockSeqs : . . . T . T CATATTTT . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqCons : CACGTATTTTTG******************************
originalCons : GGGCTA-ANATAGG-CATTGCGCCTGCTGCCCGATC-CCATTC--G-C-GTATGT----------TT---------T-A--C-GTGAATA-A-----AATATTG-TTTAAATTAAAAT
finalCons : GGGCTA-ANATAGG-CATTGCGCCTGCTGCCCGATC-CCATTCACGTATTTTTG------------------------------TGAATA-A-----AATATTG-TTTAAATTAAAAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTTACATAGACTTTTCCTGCTGCTTAATGCAATGATGTTTTTTCTTAATAAAATACTGTTTTAATAAATAAA
Unaligned ( gi|18 ): ATGGGAGAGGGCTTATATAGGCTATGCCTGTTGTCCAATCCATTTGATTTTTTTTA
Unaligned ( gi|21 ): CAGAAAGGACATATATAAGCAGAGCCTGCAGTCCGATCCTGTTATGATT
Alignments
lowQualScore : 11 1111111 333333333333333333333333333333
lowQualScore : 2 1 2 22 33 1 2 3 1111111 2 77777 333333333333333333333333333333 5 88888 2
lowQualScore : . . . .. .. . . . ....... . ..... .............................. . ..... .
lowQualScore : 9 0 5 88 66 0 2 3 5555555 2 88888 333333333333333333333333333333 0 88888 5
consensus : GGGCTA-ANATAGG-CATTGCGCCTGCTGCCCGATC-CCATTC-A-C-GT-AT-----TT-----TT-----------------GT--G-AATA-A-----AATATTG-TTTAAATTAAAAT
Reference ( family-1783 ) : GGGCTA-ANATAGG-CATTGCGCCTGCTGCCCGATC-CCATTC-A-C-GT-AT-----TT-----TT-----------------GT--G-AATA-A-----AATATTG-TTTAAATTAAAAT
gi|1 : GGGCTT-ACATATG-CATTGCGTCTGCTGCTTACTC-CAATTT-A-T-GT-AT-----
gi|10 : ggGGGCTA-GAATAAG-C--TGTGCCTGCCGCCCGATC-CCATTC-A-G-AT--T-----TT-----TT-----------------TC--A-AATA-A-----AATTTTG-TATAAATgtataattgttatacatgtacatgtatatatacataaataaaata
gi|11 : gagaGGGCTA-ATATAAT-GA--GCGCCTGCTGCC--ATC-CCAATG-G-C-AT-TT-----TTCTTAATT-----------------GT--G-AATA-A-----GATATTA-TTT
gi|12 : agGGGCTA-ATATAGGGCAT---GCCTGCGTCCAGATC-C-ATTC-AAC-AT-AT-----TTATA--TT-----------------GT--G-AATA-A-----AATATTG-TGTATATta
gi|14 : GGGCTA-TCATAGG-CAATGC--CTGCTGCC-GATC-C-ATTC-A-C-AT-AT-----TT-----TT-----------------GT--G-AATA-A-----AATATT--TTAAAATT
gi|15 : aA-AAAT-GG-CAGT---TCTGCTGCCCGATC-TCATTC-A----T-AT-----TT-----TT------------------T----AATA-A-----AATATTG-TTTAA
gi|16 : agaggacaa-ACATAGG-C-TTGC-CCTGCTGCCTAATC-CTACT------AT-GT-----TT-----TT-----------------GC--ATAATA-A-----AATAATG-TTTAAATTAAAAcaa
gi|17 : CTACATGTAGG-CATCGCGCCTGTTGCCCAATC-CAATTA-A-T-GT-AT-----
gi|19 : ataggcttacTGCTGCCCGATCGCCATTC-A-CCAT-AT-----TTCTT--TT-----------------GT--G-AATA-A-----AATATTGTTTTAAAgctctat
gi|2 : ATAGG-CAATGCGTCTGTGGACCAATC-CTATTT-A-G-GT-ATGTGTATC-----TTCTATTAGAACAACATACAT--G-AATG-A-----AATATTG-TTCAAATCAAA
gi|20 : tCCTGCTGCCCGATC-CCATTA-A-C-AT-AT-----TT-----CT-----------------TTCAG-AATA-A-----AATATTG-TTTAAATtt
gi|3 : aGGGCTT-ACATAGG-CATCGTGCCTGCTGCCCAA-A-CTATTTGA-T-GT-AT-----GTATAA-TT-----------------GT--T--ATATA-----AATGCCA-TTCAAATAAAAA
gi|4 : GGGCTT-ACATAGG-TATTGCGCCTGCTGCCCAATC-CAATTT-G-T-GT-ATG----TT-----TTAC---------------AT--G-AATA-C-----AATATTG-TTTAAATTCAAATa
gi|5 : GGGCTA-AAATAGG---TTGTACCTGCTGCCCAATC-CCA--C-G-C-GT-G-------T-----TT-----------------GT--C-AATATACATGTAATATTG-TTTAAATT
gi|6 : ggaA-AGATAGA-C--TGTGTCTGCTGCTCAATT-CCACTC-C-T-GC-GT-----TT-----TT-----------------AA--A-AAT--A-----AATATTA-TCTAAA-TAAAtta
gi|7 : gagagtgttaaGGGCTA-TGATAAA-CAATGT--CTGCTGCCAGATC-TCATTC-A-C-AT-AT-----TT-----CTTA---------------GT--G-AATA-A-----AATATTG-TTTAAA
gi|8 : gagaGGGCTA-AGATAAG-C--TGGACCTGTTGATCATTC-CCATTC-A-C----AT-----GT-----TT-----------------GT--G-AAAA-AG----AATATTG-ATTAATTTa
gi|9 : gagaATAGG-CA--GTGCCTGCTGTCTGATC-CTGTT------GTGAT-----TC-----AT-----------------CA--A-AACA-A-----AATATTG-TTTAAATTAAAtt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTTACATAGACTTTTCCTGCTGCTTAATGCAATGATGTTTTTTCTTAATAAAATACTGTTTTAATAAATAAA
Unaligned ( gi|18 ): ATGGGAGAGGGCTTATATAGGCTATGCCTGTTGTCCAATCCATTTGATTTTTTTTA
Unaligned ( gi|21 ): CAGAAAGGACATATATAAGCAGAGCCTGCAGTCCGATCCTGTTATGATT