lowQualScore : 1 555555 11 3333333333333333333 1111 222222
lowQualScore : 0 4 3 2 2 1 2 3 7 33 444444 2 7 88 33 2 1 00 44 2 2 2 5555555555555555555 33 2 0000 444 2 888888 444 2 2 333 2 2 9 33
lowQualScore : . . . . . . . . . .. ...... . . .. .. . . .. .. . . . ................... .. . .... ... . ...... ... . . ... . . . ..
lowQualScore : 4 6 1 2 5 2 5 2 2 44 666666 9 5 55 77 7 5 33 11 4 4 4 9999999999999999999 44 5 1111 444 5 333333 111 4 4 666 7 7 1 44
consensus : NTTTCGCGAGAACCTCATC-GTCGCGAATATTTC-TCGTC-GCGAACCAGT--CCTT-AGT-AATGTCTGTCATATATAAT-GAA--A-AAGG-CTC-GATCGC-GAA-A-ATT--NCTNGC--C---G----CGA--A-C---CAG---TT-TACCA-CGG-G---T-AAA-TC--GCGAA-AT-AAAGTAGCC-GCGAATAAAAGTTGGTTTACAG
Reference ( gi|8 ) : GTTTTGCGAGATCCTCATC-GTCGCGAATATTTC-TCGTC-GCAAACCAAT--CCTTTAGTTAATGTTTGTCATATATAAT-GAA--A-AAAG-TTC-GATCGC-AAA-A-ATT--TCTATC--C---G----CGA--A-C---TAG---TT-TACCT-CGA-G---T-AAA-TC--ACGAA-AT-AAAGTTGCC-GCGAATAAAAGTTGGTTTACAG
gi|17 : TTTCGCGCGAAACTCATC-GTCGCGAACATTTC-TCTTC-GCGAATCAGT--CCTT--G--AATGTCTGTCATGC-TAAT-GAT--A-AAAGATTC-GTACGC-GAA-A-ATT--
gi|15 : aaagcaatctttattcacgtgtgagaaaaTTTCGCGCGAAACTCATC-GTCGCGAACATTTC-TCTTC-GCGAATCAGT--CCTT--G--AATGTCTGTCATGC-TAAT-GAT--A-AAAGATTC-GTACGC-GAA-A-ATT--ac
gi|2 : tttaaagcaactttattcacgtgtgaaaaaTTTGTGAGAACTTGATCCATTGCAAATATTTC-TTGTC-ACAAATCAGT--CTTT--G--AATGTTTGTCATTTGTAAT-GAA--A-AGGG-CCC-CATTGCAAAA-A-ATT--ATTAGA--C---G----CAA--A-CCATTAA---TT-TACCA-CAG-G---T-GAA-TC--GCGAT-AT-AAAGTAGCC-GCAAATAAAAGTGGGTATACAGac
gi|4 : cactgcaaagtgaactttaatttgcaggtgaaaaaaaatttcgcgagaTTTGCGAGAATCTTGTC-GTCGCGAATATTTC-TCTTC-GCGAACCAGT--CCTTGAATGAATA------AAACAGGATTGAA--A-AAAGATTC-AATCGC-GAA-A-ATC--ACTGGC--C---G----CGA--A-C---ACG---TT-GACCA-CAT-G---T-GGATTC--GTGAT-AT-AAAGTAGAC-GCGAACAAAAATTGCTTTA
gi|1 : ctgtaaaccaacttttattgcaagaaaatttcgcgagaTTCACGAGAACCTCATC-GTCACGATTATTTC-TTGTC-GCGAACCTGT--CCTTGA---AA-GTTTGTCATATATAAT-GAA--A-AGGG-TTC--ATTGC-AAT-A-ATT--ACTCGC--C---A----TAA--A-C---CAG---AT-TACAA-CAA-G---T-GAA-TC--
gi|3 : accaactggtgttcacgtacgagaaaaattcgctagaTTCGCGAAAACTTCATC-GTTGCAAATATTTC-TCATG-GCAAACCAGT--CCTT--G--AATGTCTGTCATAT-TAAG-TAA--A-AAGG-CTCAAATCAC-AAATA-GTT--ACT-----CAAGG----TGA--ACC---CAG---TT-TATCT-----G---T-ATA-TT--AAGTA-A--AAAGggggtatctgtaaagtgcgaaacgaaatcgaagcgaactgaaacgaaaggaaacgaagtctaccgaaacgaaacctactgaatggaattctacca
gi|5 : ctagccagcttttattgacatgcaagaaaactttgcaagaTTTAAGAGAACCTAATC-ATTGCGAATATTTC-TCACC-ACGTACCGGT--CCT---G-TAATGTATTTTGTATTTATT-TAA--ATTTAT-TTC-GTTCGT-GAA-A-AAT--TTGATCAAC---G----CCA--A-C---CAG---TT-CATC----A-GATAT-AAA-TC--ACGAgctcaatcacaaatattactcaaggtgaaccagtttatc
gi|23 : aataatctctgaagctcagtgcattgtaacttttattccgcaaacagaattttttcatgaaaTCGCAGAATACTCATC-GTCGC-AATATTTCTTCGTCTGCGA--CAGT--ACTTTAAT
gi|22 : gtaaaccaacttttaggtgctttgcgagagaaagGCGAGAATCTCATC-GTCGC-AATATTTC-TCGTC-GCGAATCAGT--ACTTat
gi|6 : gtaaaccaacttttatgcgcttgcgagaaaagtccGAAAACTTTATC-GTCGCAAAAATTTC-TCATC-GCGAACCAGT--CCTT--G--AATGTTTGTC---TACCAC--AA--A-AAGG-CTC-GATCGC-GAA-A-ATTA-CCCA-C--C---A----CGA--A-C---CAG---TT-TACCA-CAG-G---T-GGG-TC--GCGAA-AT-AAAGTAACC-T----TAAAAGTaatgctct
gi|10 : gtaaaacaacatttattcgcgtgcacgcgaaaaaaaatcgcgagattcatAGAACCTCATC-ATCACAAATATTTC-TCATT-GCGAACCAGT--CCTTGA---AA-GTCTGTCATAGATAAT-GAA--A-AAGA-CTC-AATTGC-AAA----TT--ACTCAC--T---G----TGA--A-C---CAG---TT-TACCA-CAG-G---T-GAA-TT--GTGAA-AT-AAAACAGGC-ATGAACCAAAGTTGGTTTACAa
gi|11 : TCATT-GTCGCGAACATTTC-TTTTT-GCACACCAGT--C----ACTGAATGTTTGTCTTATATAAT-GAA--A-AATA-CTT-GATTGC-AAA-A-ATT--ACTTGC--C---A----CGA--A-T---GAG---TT-AACCA-CAG-G---T-GGA-TC--ACAAA-AT-AAAGTAGCC-ACAAATAAAAGTTGGTTTACAGa
gi|16 : CATT-ATCGCGAAAATTTA-TTGTC-ACGAAATAGT--CTTTTA
gi|7 : TTGCAAATATTTC-TTGTC-CCGAACCAATATTCTTTAAT--ATACCTTTTATGTTTAA---GA--T-AATG-TT--GGTTGC-GAA-A-ATT-------------------------------AG---TT-AATTA-TGG-G---T-ATA-TC--AAGAA-AT-ACAGTTAGC-ACAAATAAAAGCTGGTTTACAGtctctaacgcaaacattggttgccgcgaagaagtaaatgactgttatatcgcgaaataaagtcacttggttaaaagttggctcacaa
gi|13 : caaatgaaacaaaaaatttattcatgtgcaagaaattttcatgaggtttaTCACAAATATTAC-TCAAG-GTGAACCA----------GTT--TATCTGTCATATA--GT--AA--A-AGAG-CTC-AATC-C-AAA-ATATT--ACT-----C---AAGGTTGA--A-C---CAG---TTATTCCA-CGGTG---G-AAT-TG--ACAAA-ATTAAAGTAGCC-ACGAATAAAAACTGATTTAtat
gi|12 : aaGAATATTTC-TCGCC-GCGAACCAGT--CTT----TCAATGTCTAAAGTATATGCT-TAAGTA-GTAG---C-GACCAC-AAA-A-ATT--ga
gi|20 : tgtaaaccaacttttattcgtgtttcagaaattcgagaatcccgtcttaagactttgA--A-AAGG-CTC-AATTGC-AAA-T-ATT--TCTGGC--C---G----TGA--A-C---CAG---TT-TACCA-CAG-G---T-AAA-TT--GCGAA-AT-AAAGTAGCC-GCGAAGAAAAGTTGGTTTACAGagccgtcatataccaatt
gi|19 : ttgaatgcctgctgA--A-AAGG-CTC-AATTGC-AAA-T-ATT--TCTGGC--C---G----TGA--A-C---CAG---TT-TACCA-C-A-G---TGAAA-TT--GCGAA-AT-AAAGTAGCC-GCGAAGAAAAGTTGGTTTACAGta
gi|16 : ttgaatgcctgctgATCGC-GAA-A-ATT--TATTGT--C---A----CGA--A-A---TAGTCTTT-TATCT-C-------T-AA---C--GCAAACAT--TGGTTGCC-GCGAAGAAta
gi|14 : cattGC-AAA-A-ATTAGT-TA-C--T---G----GGA--A-C---CAG---TT-TATTTACTG-G---T-AAA-TC--ACAAA-AT-CAAGTCTTC-ATGGATTATAGTTGGTTTACgtaaatgactgttatatcgcgaaataaagtcacttggttaaaagttggctcacaa
gi|4 : acctcaataaatatttatcagctctgaccttcagtgtcttttttattgaggactatcttagctTATT--C---G----CGACGA-C---AAG---AT-T--CT-CG------C-AAA-TCTCGCGAA-AT-----TTTCTTGC-AATAAAAGTTGGTTTACAG
gi|24 : C--C---C----CAA--A-C---TAA---TT-CATCA-CTA-G---T-AAA-TC--GTGAA-AT-AAAGTCCTC-GCTGCCGAAAGTTGGTTTGCAGtttctcttcgcgaaccagtccttgaatgaataaaacaggattgaaaaaagattcaatcgcgaaaatcactggccgcgaacacgttgaccacatgtggattcgtgatataaagtagacgcgaacaaaaattgcttta
gi|16 : acaaatatga---T-ATA-TC--GCGAA-AT-AAAGTCACT--TGGTTAAAAGTTGGCTCACAta
gi|12 : cattatcgcgaaaatttattgtcacgaaatagtcttttatctctaacgcaaacattggttgccgcgaagaagtaaatgactgtC-ACGAATAAAAGTTGGTTTACAa
gi|21 : C-ACAAATAAAAGCTGGTTTACAtttcagaaattcgagaatcccgtcttaagactttggaatatttctcgccgcgaaccagtctttcaatgtctaaagtatatgcttaagtagtagcgaccacaaaaattagccgtcatataccaatt
gi|22 : -GCGCATAAAAGTTGGTTTACtgtaagaaattttgccgagcttcaggagaaactcataattacgaatgttgcttgctgtgaggcagctagtcct
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): TTGTTATGTTTTGAAAAATTGATTCCTTATCACAAGAATACGCCGTAAATGAAATTTCCAAATTAAAAAAATGGGTACCTGTAAATGCGAAACGAAATTAAGAAAACAAACAAAACAAAACGAAACAAAATCTACGCCAAACGAAACGAAAATCTGCCAA
Unaligned ( gi|18 ): TTTAGTGCCTCTCATATTGTTTTGATGATTATCTTGGTCATTAGAATTAGTCACCACAAACCAGTTCATCACTGGTATTACAAAACAAAGTCTTCATGAATGAAAGTTATTTTA
Alignments
lowQualScore : 44444
lowQualScore : 3 8888 333 1 2 2 0 2 2 333 66666 7 6666 4 333 33 22 2 555 1 44 3 1 2 333 2 333 2 2 7 0 2 33 2 5555 2 55 22
lowQualScore : . .... ... . . . . . . ... ..... . .... . ... .. .. . ... . .. . . . ... . ... . . . . . .. . .... . .. ..
lowQualScore : 1 3333 999 8 2 2 9 2 2 999 88888 4 4444 4 777 77 66 7 222 9 55 5 7 0 555 0 555 0 1 3 1 4 22 4 3333 5 88 66
consensus : NTTTCGCGAGAAC-CTCATC----G---TCGCGAATATTT-C-TCGTC-GCGAACC-AGT---CCTT-G---AATGTCTGTCATATATAAT--GA-AA---AAG-GCTC-GATCGCGAA---A-A--TTACTCGCCGC-GA---A-CCA---GTT-TACC-ACGGGTGAA-TC--G-CGAAA----T-AAAGT-AGCC-GCGAATAAAAGTTGGTTTACAG
Reference ( family-1619 ) : NTTTCGCGAGAAC-CTCATC----G---TCGCGAATATTT-C-TCGTC-GCGAACC-AGT---CCTT-AGT-AATGTCTGTCATATATAAT--GA-AA---AAG-GCTC-GATCGCGAA---A-A--TTNCTNGCCGC-GA---A-CCA---GTT-TACC-ACGGGTAAA-TC--G-CGAAA----T-AAAGT-AGCC-GCGAATAAAAGTTGGTTTACAG
gi|1 : TTCACGAGAAC-CTCATC----G---TCACGATTATTT-C-TTGTC-GCGAACC-TGT---CCTT-G---AAAGTTTGTCATATATAAT--GA-AA---AGG-GTTC--ATTGCAAT---A-A--TTACTCGCCAT-AA---A-CCA---GAT-TACA-ACAAGTGAA-TC--G-GGGTATCTGT-AAAGT------GCGAA
gi|10 : accaactggtgttcacgtacgagaaaaattcgctagaAGAAC-CTCATC----A---TCACAAATATTT-C-TCATT-GCGAACC-AGT---CCTT-G---AAAGTCTGTCATAGATAAT--GA-AA---AAG-ACTC-AATTGC--A---A-A--TTACTCACTGT-GA---A-CCA---GTT-TACC-ACAGGTGAA-TT--G-TGAAA----T-AAAAC-AGGC-ATGAACCAAAGTTGGTTTACAacgaaatcgaagcgaactgaaacgaaaggaaacgaagtctaccgaaacgaaacctactgaatggaattctacca
gi|11 : TCATT----G---TCGCGAACATTT-C-TTTTT-GCACACC-AGT---CACT-G---AATGTTTGTCTTATATAAT--GA-AA---AAT-ACTT-GATTGCAAA---A-A--TTACTTGCCAC-GA---A-TGA---GTT-AACC-ACAGGTGGA-TC--A-CAAAA----T-AAAGT-AGCC-ACAAATAAAAGTTGGTTTACAGa
gi|12 : C-ACGAATAAAAGTTGGTTTACA
gi|12 : CGAGAAT-CCCGTCTTAAGACTTTG-GAATATTT-C-TCGCC-GCGAACC-AGT---CTTT---C-AATGTCTAAAGTATATGCT--TA-AG---TAG-TAGC-GACCACAAA---A-A--T---TAGCCGT-CATATA-CCA---ATT-tttcagaaattcgagaatcccgtcttaagactttggaatatttctcgccgcgaaccagtctttcaatgtctaaagtatatgcttaagtagtagcgaccacaaaaattagccgtcatataccaatt
gi|13 : tgtaaaccaacttttattcgtgtttcagaaatt---TCACAAATATTA-C-TCAAG-GTGAACC-AGT-----TT-A-------TCTGTCATATA------GT-AA---AAGAGCTC-AATC-CAAA---ATA--TTACTCAAGGTTGA---A-CCA---GTTATTCC-ACGGTGGAA-TT--GACAAAA----TTAAAGT-AGCC-ACGAATAAAAACTGATTTA
gi|14 : aaGCAAA---A-A--TTAGTTACTGG-GA---A-CCA---GTT-TATTTACTGGTAAA-TC--A-CAAAA----T-CAAGT-CTTC-ATGGATTATAGTTGGTTTACga
gi|15 : acctcaataaatatttatcagctctgaccttcagtgtcttttttattgaggactatcttagctTTTCGCGCGAAA-CTCATC----G---TCGCGAACATTT-C-TCTTC-GCGAATC-AGT---CCTT-G---AATGTCTGTCATGC-TAAT--GATAA---AAG-ATTC-GTACGCGAA---A-A--TTAC
gi|16 : tttaaagcaactttattcacgtgtgaaaaaCATT----A---TCGCGAAAATTT-A-TTGTC-ACGAAAT-AGT---CTTT------------------TAT------------------CTC-TAACGCAAA---C-A--TTGGTTGCCGC-GA---A-GAA---GTA-AATG-ACTGTTATA-TC--G-CGAAA----T-AAAGT-CACT--TGGTTAAAAGTTGGCTCACA
gi|17 : TTTCGCGCGAAA-CTCATC----G---TCGCGAACATTT-C-TCTTC-GCGAATC-AGT---CCTT-G---AATGTCTGTCATGC-TAAT--GATAA---AAG-ATTC-GTACGCGAA---A-A--TTACa
gi|18 : aaagcaatctttattcacgtgtgagaaaaCTT-GGTCATTAG---A-A--TTAGTCACCAC-AA---A-CCA---GTT-CATC-ACTGGT--A-TT--A-CAAAA----C-AAAGT-CTTC-ATGAATGAAAGTTATTTTA
gi|19 : tttagtgcctctcatattgttttgatgattat-AA---AAG-GCTC-AATTGCAAA---T-A--TTTCTGGCCGT-GA---A-CCA---GTT-TACC-ACAGTGAAA-TT--G-CGAAA----T-AAAGT-AGCC-GCGAAGAAAAGTTGGTTTACAG
gi|2 : ttgaatgcctgctgTTTGTGAGAAC-TTGATCC---A---TTGCAAATATTT-C-TTGTC-ACAAATC-AGT---CTTT-G---AATGTTTGTCATTTGTAAT--GA-AA---AGG-GCCC-CATTGCAAA---A-AA-TTATTAGACGC-AA---A-CCATTAATT-TACC-ACAGGTGAA-TC--G-CGATA----T-AAAGT-AGCC-GCAAATAAAAGTGGGTATACAGta
gi|20 : cactgcaaagtgaactttaatttgcaggtgaaaaaaaatttcgcgaga-AA---AAG-GCTC-AATTGCAAA---T-A--TTTCTGGCCGT-GA---A-CCA---GTT-TACC-ACAGGTAAA-TT--G-CGAAA----T-AAAGT-AGCC-GCGAAGAAAAGTTGGTTTACAG
gi|22 : ttgaatgcctgctg-GCGCATAAAAGTTGGTTTACta
gi|22 : TCCGCGAGAAT-CTCATC----G---TCGC-AATATTT-C-TCGTC-GCGAATC-AGT---ACTT-AAT-ttgcgagaaaagtccgcgagaatctcatcgtcgcaatatttctcgtcgcgaatcagtacttaatgctct
gi|23 : gtaaaccaacttttatgcgcttgcgagaaaagTCGC-AGAATACTCATC----G---TCGC-AATATTT-CTTCGTCTGCGA--C-AGT---ACTT---T-AATATgctct
gi|24 : gtaaaccaacttttaggtgctttgcgagagaaagTGACCCC-AA---A-CTA---ATT-CATC-ACTAGTAAA-TC--G-TGAAA----T-AAAGT-CCTC-GCTGCCGAAAGTTGGTTTGCAG
gi|3 : acaaataTTCGCGAAAAC-TTCATC----G---TTGCAAATATTT-C-TCATG-GCAAACC-AGT---CCTT-G---AATGTCTGTCATAT-TAAG--TA-AA---AAG-GCTCAAATCACAAAT--A-G--TTACTCAAGGT-GA---ACCCA---GTT-TATC-ta
gi|3 : ctagccagcttttattgacatgcaagaaaactttgcaaga---TCACAAATAGTTAC-TCAAG-GTGAACCCAGT-----TT-A-------TCTGT-ATAT-TAAG--TA-AA---AAG-GCTC-AATCACAAA---T-A--TTACTCAAGGT-GA---A-CCA---GTT-TATC-tgtatattaagtaaaaaggctcaatcacaaatattactcaaggtgaaccagtttatc
gi|4 : ctagccagcttttattgacatgcaagaaaactttgcaagattcgcgaaaacttcatcgttgcaaatatttctcatggcaaaccagtccttgaatgtctgtcatattaagtaaaaaggctcaaaA---AGG-ACTG-GTTCGCGAAGAGA-A--ATATTCGCGAC-GA-----CAA---GAT-TCTC-GC----AAA-TCTCG-CGAAA----T-----T-TTCTTGC-AATAAAAGTTGGTTTACAG
gi|4 : TTTGCGAGAAT-CTTGTC----G---TCGCGAATATTT-C-TCTTC-GCGAACC-AGT---CCTT-G---AATGAATA--AAACAGGATTGAA-AA---AAG-ATTC-AATCGCGAA---A-A--TCACTGGCCGC-GA---A-CAC---GTT-GACC-ACATGTGGATTC--G-TGATA----T-AAAGT-AGAC-GCGAACAAAAATTGCTTTAgaatgaataaaacaggattgaaaaaagattcaatcgcgaaaatcactggccgcgaacacgttgaccacatgtggattcgtgatataaagtagacgcgaacaaaaattgcttta
gi|5 : ctgtaaaccaacttttattgcaagaaaatttcgcgagaGAGAAC-CTAATC----A---TTGCGAATATTT-C-TCACC-ACGTACC-GGT---CCT---GT-AATGTATTTTGTATTTATT--TA-AATTTA---TTTC-GTTCGTGAA---A-AATTTGATCAACGC-CA---A-CCA---GTT-CATC-AGATATAAA-TC--A-CGA
gi|6 : aataatctctgaagctcagtgcattgtaacttttattccgcaaacagaattttttcatgaaatttaaTTCATGAAAAC-TTTATC----G---TCGCAAAAATTT-C-TCATC-GCGAACC-AGT---CCTT-G---AATGTTTGTC---TACCAC---A-AA---AAG-GCTC-GATCGCGAA---A-A--TTACCCACCAC-GA---A-CCA---GTT-TACC-ACAGGTGGG-TC--G-CGAAA----T-AAAGT-AACC-T----TAAAAGT
gi|7 : gtaaaacaacatttattcgcgtgcacgcgaaaaaaaatcgcgaga---TTGCAAATATTT-C-TTGTC-CCGAACC-AATATTCTTT-AAT-A-TACCTTTTATGTTTAA---GA-TA---ATG---TT-GGTTGCGAA---A-A--TT-------------------A---GTT-AATT-ATGGGTATA-TC--A-AGAAA----T-ACAGTTAGC--ACAAATAAAAGCTGGTTTACAGa
gi|8 : caaatgaaacaaaaaatttattcatgtgcaagaaattttcatgaggtttaTTTTGCGAGATC-CTCATC----G---TCGCGAATATTT-C-TCGTC-GCAAACC-AAT---CCTTTAGTTAATGTTTGTCATATATAAT--GA-AA---AAA-GTTC-GATCGCAAA---A-A--TTTCTATCCGC-GA---A-CTA---GTT-TACC-TCGAGTAAA-TC--A-CGAAA----T-AAAGT-TGCC-GCGAATAAAAGTTGGTTTACAGtat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TTGTTATGTTTTGAAAAATTGATTCCTTATCACAAGAATACGCCGTAAATGAAATTTCCAAATTAAAAAAATGGGTACCTGTAAATGCGAAACGAAATTAAGAAAACAAACAAAACAAAACGAAACAAAATCTACGCCAAACGAAACGAAAATCTGCCAA
Unaligned ( gi|21 ): TGTAAACCAGCTTTTATTTGTGTGTAAGAAATTTTGCCGAGCTTCAGGAGAAACTCATAATTACGAATGTTGCTTGCTGTGAGGCAGCTAGTCCT
Alignments
lowQualScore : 111111111111111
lowQualScore : 3 8888 333 1 2 2 0 2 2 33 88888 2 22 222222222222222 333 22 33 22 1 44 555 1 22 0 1 1 1 333 1 1 2 6 444 2 2 5555 7777 777 22
lowQualScore : . .... ... . . . . . . .. ..... . .. ............... ... .. .. .. . .. ... . .. . . . . ... . . . . ... . . .... .... ... ..
lowQualScore : 1 3333 999 8 2 2 9 2 2 11 00000 0 88 777777777777777 555 88 11 00 8 00 000 8 55 1 4 9 9 333 9 9 0 3 444 2 2 0000 4444 111 66
consensus : NTTTCGCGAGAAC-CTCATC----G---TCGCGAATATTT-C-TCGTC-GCGAACC-AGT--CCTT--G--AATG-T--CTGTCATATATAAT--GA-AA---AA--G-GCTC-GATCG-C-GAA---A-A--TTACTCGCCGC-GAA-CC---AGT-T-TACC-ACGGGTG-AAT-CG-CGAAA----T----AAAGT-AGCC-GCGAATAAAAGTTGGTTTACAG
Reference ( family-1619 ) : NTTTCGCGAGAAC-CTCATC----G---TCGCGAATATTT-C-TCGTC-GCGAACC-AGT--CCTT--G--AATG-T--CTGTCATATATAAT--GA-AA---AA--G-GCTC-GATCG-C-GAA---A-A--TTACTCGCCGC-GAA-CC---AGT-T-TACC-ACGGGTG-AAT-CG-CGAAA----T----AAAGT-AGCC-GCGAATAAAAGTTGGTTTACAG
gi|1 : TTCACGAGAAC-CTCATC----G---TCACGATTATTT-C-TTGTC-GCGAACC-TGT--CCTT--G--AAAG-T--TTGTCATATATAAT--GA-AA---AG--G-GTTC--ATTG-C-AAT---A-A--TTACTCGCCAT-AAA-CC---AGA-T-TACA-ACAAGTG-AAT-CG-GGGTATCTGT----AAAGT------GCGAA
gi|10 : accaactggtgttcacgtacgagaaaaattcgctagaAGAAC-CTCATC----A---TCACAAATATTT-C-TCATT-GCGAACC-AGT--CCTT--G--AAAG-T--CTGTCATAGATAAT--GA-AA---AA--G-ACTC-AATTG-C---A---A-A--TTACTCACTGT-GAA-CC---AGT-T-TACC-ACAGGTG-AAT-TG-TGAAA----T----AAAAC-AGGC-ATGAACCAAAGTTGGTTTACAacgaaatcgaagcgaactgaaacgaaaggaaacgaagtctaccgaaacgaaacctactgaatggaattctacca
gi|11 : TCATT----G---TCGCGAACATTT-C-TTTTT-GCACACC-AGT--CACT--G--AATG-T--TTGTCTTATATAAT--GA-AA---AA--T-ACTT-GATTG-C-AAA---A-A--TTACTTGCCAC-GAA-TG---AGT-T-AACC-ACAGGTG-GAT-CA-CAAAA----T----AAAGT-AGCC-ACAAATAAAAGTTGGTTTACAGa
gi|12 : T--GA-AA---GACTG-GTTC-G--CGGC-GAG---A-A--ATATTC----C-AAA-------GTCT-TAAG-ACGGG---ATT-CT-CGAAT----TTCTGAAA------C-ACGAATAAAAGTTGGTTTACA
gi|12 : CGAGAAT-CCCGTCTTAAGACTTTG-GAATATTT-C-TCGCC-GCGAACC-AGT--CTTT--C--AATG-T--CTAAAGTATATGCT--TA-AG---TA--G-TAGC-GACCA-C-AAA---A-A--TTAGCCGTCAT-ATA-CC---AAT-T-atgtctaaagtatatgcttaagtagtagcgaccacaaaaattagccgtcatataccaatt
gi|13 : tgtaaaccaacttttattcgtgtttcagaaatt---TCACAAATATTA-C-TCAAG-GTGAACC-AGT--T----------TA-T--CTGTCATATA------GT-AA---AA--GAGCTC-AATC--C-AAA---ATA--TTACTCAAGGTTGAA-CC---AGT-TATTCC-ACGGTGG-AAT-TGACAAAA----TT---AAAGT-AGCC-ACGAATAAAAACTGATTTA
gi|14 : aaG-C-AAA---A-A--TTAGTTACTGG-GAA-CC---AGT-T-TATTTACTGGTA-AAT-CA-CAAAA----T----CAAGT-CTTC-ATGGATTATAGTTGGTTTACga
gi|15 : acctcaataaatatttatcagctctgaccttcagtgtcttttttattgaggactatcttagctTTTCGCGCGAAA-CTCATC----G---TCGCGAACATTT-C-TCTTC-GCGAATC-AGT--CCTT--G--AATG-T--CTGTCATGC-TAAT--GATAA---AA--G-ATTC-GTACG-C-GAA---A-A--TTAC
gi|16 : tttaaagcaactttattcacgtgtgaaaaaCATT----A---TCGCGAAAATTT-A-TTGTC-ACGAAAT-AGT--CTTT---------------------TAT--------------------CTC-TAACG-C-AAA---C-A--TTGGTTGCCGC-GAA-GA---AGT-A-AATG-ACTGTTA-TAT-CG-CGAAA----T----AAAGT-CACT--TGGTTAAAAGTTGGCTCACA
gi|17 : TTTCGCGCGAAA-CTCATC----G---TCGCGAACATTT-C-TCTTC-GCGAATC-AGT--CCTT--G--AATG-T--CTGTCATGC-TAAT--GATAA---AA--G-ATTC-GTACG-C-GAA---A-A--TTACa
gi|18 : aaagcaatctttattcacgtgtgagaaaaCTT-GGTCA-T-TAG---A-A--TTAGTCACCAC-AAA-CC---AGT-T-CATC-ACTGGT---AT-TA-CAAAA----C----AAAGT-CTTC-ATGAATGAAAGTTATTTTA
gi|19 : tttagtgcctctcatattgttttgatgattatTT--G--AATG-C--CTGC---------T--G--AA---AA--G-GCTC-AATTG-C-AAA---T-A--TTTCTGGCCGT-GAA-CC---AGT-T-TACC-AC-AGTGAAAT-TG-CGAAA----T----AAAGT-AGCC-GCGAAGAAAAGTTGGTTTACAG
gi|2 : TTTGTGAGAAC-TTGATCC---A---TTGCAAATATTT-C-TTGTC-ACAAATC-AGT--CTTT--G--AATG-T--TTGTCATTTGTAAT--GA-AA---AG--G-GCCC-CATTG-CAAAA---A-A--TTATTAGACGC-AAA-CCATTAAT-T-TACC-ACAGGTG-AAT-CG-CGATA----T----AAAGT-AGCC-GCAAATAAAAGTGGGTATACAGta
gi|20 : cactgcaaagtgaactttaatttgcaggtgaaaaaaaatttcgcgagaTT--G--AATG-C--CTGC---------T--G--AA---AA--G-GCTC-AATTG-C-AAA---T-A--TTTCTGGCCGT-GAA-CC---AGT-T-TACC-ACAGGTA-AAT-TG-CGAAA----T----AAAGT-AGCC-GCGAAGAAAAGTTGGTTTACAG
gi|22 : -GCGCATAAAAGTTGGTTTACta
gi|22 : TCCGCGAGAAT-CTCATC----G---TCGC-AATATTT-C-TCGTC-GCGAATC-AGT--ACTT-----AATGCT--CTttgcgagaaaagtccgcgagaatctcatcgtcgcaatatttctcgtcgcgaatcagtacttaatgctct
gi|23 : gtaaaccaacttttatgcgcttgcgagaaaagTCGC-AGAATACTCATC----G---TCGC-AATATTT-CTTCGTCTGCGA--C-AGT--ACTT--T--AATA-T--
gi|24 : gtaaaccaacttttaggtgctttgcgagagaaagCCCC-AAA-CT---AAT-T-CATC-ACTAGTA-AAT-CG-TGAAA----T----AAAGT-CCTC-GCTGCCGAAAGTTGGTTTGCAG
gi|3 : acaaatatgaTTCGCGAAAAC-TTCATC----G---TTGCAAATATTT-C-TCATG-GCAAACC-AGT--CCTT--G--AATG-T--CTGTCATAT-TAAG--TA-AA---AA--G-GCTCAAATCA-C-AAAT--A-G--TTACTCAAGGT-GAACCC---AGT-T-TATC-ta
gi|3 : ctagccagcttttattgacatgcaagaaaactttgcaaga---TCACAAATAGTTAC-TCAAG-GTGAACCCAGT--T----------TA-T--CTGT-ATAT-TAAG--TA-AA---AA--G-GCTC-AATCA-C-AAA---T-A--TTACTCAAGGT-GAA-CC---AGT-T-TATC-tgtatattaagtaaaaaggctcaatcacaaatattactcaaggtgaaccagtttatc
gi|4 : ctagccagcttttattgacatgcaagaaaactttgcaagattcgcgaaaacttcatcgttgcaaatatttctcatggcaaaccagtccttgaatgtctgtcatattaagtaaaaaggctcaaaA---AG--G-ACTG-GTTCG-C-GAAGAGA-A--ATATTCGCGAC-GA--CA---AGA-T-TCTC-GCAAATC---T-CG-CGAAA----T--------T-TTCTTGC-AATAAAAGTTGGTTTACAG
gi|4 : TTTGCGAGAAT-CTTGTC----G---TCGCGAATATTT-C-TCTTC-GCGAACC-AGT--CCTT--G--AATG-A--ATA--AAACAGGATTGAA-AA---AA--G-ATTC-AATCG-C-GAA---A-A--TCACTGGCCGC-GAA-CA---CGT-T-GACC-ACATGTG-GATTCG-TGATA----T----AAAGT-AGAC-GCGAACAAAAATTGCTTTAgaatgaataaaacaggattgaaaaaagattcaatcgcgaaaatcactggccgcgaacacgttgaccacatgtggattcgtgatataaagtagacgcgaacaaaaattgcttta
gi|5 : ctgtaaaccaacttttattgcaagaaaatttcgcgagaGAGAAC-CTAATC----A---TTGCGAATATTT-C-TCACC-ACGTACC-GGT--CCTG--T--AATG-T--ATTTTGTATTTATT--TA-AATTTA-----TTTC-GTTCG-T-GAA---A-AATTTGATCAACGC-CAA-CC---AGT-T-CATC-AGATATA-AAT-CA-CGA
gi|6 : aataatctctgaagctcagtgcattgtaacttttattccgcaaacagaattttttcatgaaatttaaTTCATGAAAAC-TTTATC----G---TCGCAAAAATTT-C-TCATC-GCGAACC-AGT--CCTT--G--AATG-T--TTGTC---TACCAC---A-AA---AA--G-GCTC-GATCG-C-GAA---A-A--TTACCCACCAC-GAA-CC---AGT-T-TACC-ACAGGTG-GGT-CG-CGAAA----T----AAAGT-AACC-T----TAAAAGT
gi|7 : gtaaaacaacatttattcgcgtgcacgcgaaaaaaaatcgcgaga---TTGCAAATATTT-C-TTGTC-CCGAACC-AATATTCTT--T--AATA-TACCTTTTATGTTTAA---GA-TA---AT--G---TT-GGTTG-C-GAA---A-A--TTA-------------------GT-T-AATT-ATGGGTA-TAT-CA-AGAAA----T----ACAGTTAGC--ACAAATAAAAGCTGGTTTACAGa
gi|8 : caaatgaaacaaaaaatttattcatgtgcaagaaattttcatgaggtttaTTTTGCGAGATC-CTCATC----G---TCGCGAATATTT-C-TCGTC-GCAAACC-AAT--CCTTTAGTTAATG-T--TTGTCATATATAAT--GA-AA---AA--A-GTTC-GATCG-C-AAA---A-A--TTTCTATCCGC-GAA-CT---AGT-T-TACC-TCGAGTA-AAT-CA-CGAAA----T----AAAGT-TGCC-GCGAATAAAAGTTGGTTTACAGtat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TTGTTATGTTTTGAAAAATTGATTCCTTATCACAAGAATACGCCGTAAATGAAATTTCCAAATTAAAAAAATGGGTACCTGTAAATGCGAAACGAAATTAAGAAAACAAACAAAACAAAACGAAACAAAATCTACGCCAAACGAAACGAAAATCTGCCAA
Unaligned ( gi|21 ): TGTAAACCAGCTTTTATTTGTGTGTAAGAAATTTTGCCGAGCTTCAGGAGAAACTCATAATTACGAATGTTGCTTGCTGTGAGGCAGCTAGTCCT
Alignments
lowQualScore : 111111111111111
lowQualScore : 3 8888 333 1 2 2 0 2 2 33 88888 2 22 222222222222222 333 22 33 22 1 44 555 1 22 0 1 1 1 333 1 1 2 6 444 2 2 5555 7777 777 22
lowQualScore : . .... ... . . . . . . .. ..... . .. ............... ... .. .. .. . .. ... . .. . . . . ... . . . . ... . . .... .... ... ..
lowQualScore : 1 3333 999 8 2 2 9 2 2 11 00000 0 88 777777777777777 555 88 11 00 8 00 000 8 55 1 4 9 9 333 9 9 0 3 444 2 2 0000 4444 111 66
consensus : NTTTCGCGAGAAC-CTCATC----G---TCGCGAATATTT-C-TCGTC-GCGAACC-AGT--CCTT--G--AATG-T--CTGTCATATATAAT--GA-AA---AA--G-GCTC-GATCG-C-GAA---A-A--TTACTCGCCGC-GAA-CC---AGT-T-TACC-ACGGGTG-AAT-CG-CGAAA----T----AAAGT-AGCC-GCGAATAAAAGTTGGTTTACAG
Reference ( family-1619 ) : NTTTCGCGAGAAC-CTCATC----G---TCGCGAATATTT-C-TCGTC-GCGAACC-AGT--CCTT--G--AATG-T--CTGTCATATATAAT--GA-AA---AA--G-GCTC-GATCG-C-GAA---A-A--TTACTCGCCGC-GAA-CC---AGT-T-TACC-ACGGGTG-AAT-CG-CGAAA----T----AAAGT-AGCC-GCGAATAAAAGTTGGTTTACAG
gi|1 : TTCACGAGAAC-CTCATC----G---TCACGATTATTT-C-TTGTC-GCGAACC-TGT--CCTT--G--AAAG-T--TTGTCATATATAAT--GA-AA---AG--G-GTTC--ATTG-C-AAT---A-A--TTACTCGCCAT-AAA-CC---AGA-T-TACA-ACAAGTG-AAT-CG-GGGTATCTGT----AAAGT------GCGAA
gi|10 : accaactggtgttcacgtacgagaaaaattcgctagaAGAAC-CTCATC----A---TCACAAATATTT-C-TCATT-GCGAACC-AGT--CCTT--G--AAAG-T--CTGTCATAGATAAT--GA-AA---AA--G-ACTC-AATTG-C---A---A-A--TTACTCACTGT-GAA-CC---AGT-T-TACC-ACAGGTG-AAT-TG-TGAAA----T----AAAAC-AGGC-ATGAACCAAAGTTGGTTTACAacgaaatcgaagcgaactgaaacgaaaggaaacgaagtctaccgaaacgaaacctactgaatggaattctacca
gi|11 : TCATT----G---TCGCGAACATTT-C-TTTTT-GCACACC-AGT--CACT--G--AATG-T--TTGTCTTATATAAT--GA-AA---AA--T-ACTT-GATTG-C-AAA---A-A--TTACTTGCCAC-GAA-TG---AGT-T-AACC-ACAGGTG-GAT-CA-CAAAA----T----AAAGT-AGCC-ACAAATAAAAGTTGGTTTACAGa
gi|12 : T--GA-AA---GACTG-GTTC-G--CGGC-GAG---A-A--ATATTC----C-AAA-------GTCT-TAAG-ACGGG---ATT-CT-CGAAT----TTCTGAAA------C-ACGAATAAAAGTTGGTTTACA
gi|12 : CGAGAAT-CCCGTCTTAAGACTTTG-GAATATTT-C-TCGCC-GCGAACC-AGT--CTTT--C--AATG-T--CTAAAGTATATGCT--TA-AG---TA--G-TAGC-GACCA-C-AAA---A-A--TTAGCCGTCAT-ATA-CC---AAT-T-atgtctaaagtatatgcttaagtagtagcgaccacaaaaattagccgtcatataccaatt
gi|13 : tgtaaaccaacttttattcgtgtttcagaaatt---TCACAAATATTA-C-TCAAG-GTGAACC-AGT--T----------TA-T--CTGTCATATA------GT-AA---AA--GAGCTC-AATC--C-AAA---ATA--TTACTCAAGGTTGAA-CC---AGT-TATTCC-ACGGTGG-AAT-TGACAAAA----TT---AAAGT-AGCC-ACGAATAAAAACTGATTTA
gi|14 : aaG-C-AAA---A-A--TTAGTTACTGG-GAA-CC---AGT-T-TATTTACTGGTA-AAT-CA-CAAAA----T----CAAGT-CTTC-ATGGATTATAGTTGGTTTACga
gi|15 : acctcaataaatatttatcagctctgaccttcagtgtcttttttattgaggactatcttagctTTTCGCGCGAAA-CTCATC----G---TCGCGAACATTT-C-TCTTC-GCGAATC-AGT--CCTT--G--AATG-T--CTGTCATGC-TAAT--GATAA---AA--G-ATTC-GTACG-C-GAA---A-A--TTAC
gi|16 : tttaaagcaactttattcacgtgtgaaaaaCATT----A---TCGCGAAAATTT-A-TTGTC-ACGAAAT-AGT--CTTT---------------------TAT--------------------CTC-TAACG-C-AAA---C-A--TTGGTTGCCGC-GAA-GA---AGT-A-AATG-ACTGTTA-TAT-CG-CGAAA----T----AAAGT-CACT--TGGTTAAAAGTTGGCTCACA
gi|17 : TTTCGCGCGAAA-CTCATC----G---TCGCGAACATTT-C-TCTTC-GCGAATC-AGT--CCTT--G--AATG-T--CTGTCATGC-TAAT--GATAA---AA--G-ATTC-GTACG-C-GAA---A-A--TTACa
gi|18 : aaagcaatctttattcacgtgtgagaaaaCTT-GGTCA-T-TAG---A-A--TTAGTCACCAC-AAA-CC---AGT-T-CATC-ACTGGT---AT-TA-CAAAA----C----AAAGT-CTTC-ATGAATGAAAGTTATTTTA
gi|19 : tttagtgcctctcatattgttttgatgattatTT--G--AATG-C--CTGC---------T--G--AA---AA--G-GCTC-AATTG-C-AAA---T-A--TTTCTGGCCGT-GAA-CC---AGT-T-TACC-AC-AGTGAAAT-TG-CGAAA----T----AAAGT-AGCC-GCGAAGAAAAGTTGGTTTACAG
gi|2 : TTTGTGAGAAC-TTGATCC---A---TTGCAAATATTT-C-TTGTC-ACAAATC-AGT--CTTT--G--AATG-T--TTGTCATTTGTAAT--GA-AA---AG--G-GCCC-CATTG-CAAAA---A-A--TTATTAGACGC-AAA-CCATTAAT-T-TACC-ACAGGTG-AAT-CG-CGATA----T----AAAGT-AGCC-GCAAATAAAAGTGGGTATACAGta
gi|20 : cactgcaaagtgaactttaatttgcaggtgaaaaaaaatttcgcgagaTT--G--AATG-C--CTGC---------T--G--AA---AA--G-GCTC-AATTG-C-AAA---T-A--TTTCTGGCCGT-GAA-CC---AGT-T-TACC-ACAGGTA-AAT-TG-CGAAA----T----AAAGT-AGCC-GCGAAGAAAAGTTGGTTTACAG
gi|22 : -GCGCATAAAAGTTGGTTTACta
gi|22 : TCCGCGAGAAT-CTCATC----G---TCGC-AATATTT-C-TCGTC-GCGAATC-AGT--ACTT-----AATGCT--CTttgcgagaaaagtccgcgagaatctcatcgtcgcaatatttctcgtcgcgaatcagtacttaatgctct
gi|23 : gtaaaccaacttttatgcgcttgcgagaaaagTCGC-AGAATACTCATC----G---TCGC-AATATTT-CTTCGTCTGCGA--C-AGT--ACTT--T--AATA-T--
gi|24 : gtaaaccaacttttaggtgctttgcgagagaaagCCCC-AAA-CT---AAT-T-CATC-ACTAGTA-AAT-CG-TGAAA----T----AAAGT-CCTC-GCTGCCGAAAGTTGGTTTGCAG
gi|3 : acaaatatgaTTCGCGAAAAC-TTCATC----G---TTGCAAATATTT-C-TCATG-GCAAACC-AGT--CCTT--G--AATG-T--CTGTCATAT-TAAG--TA-AA---AA--G-GCTCAAATCA-C-AAAT--A-G--TTACTCAAGGT-GAACCC---AGT-T-TATC-ta
gi|3 : ctagccagcttttattgacatgcaagaaaactttgcaaga---TCACAAATAGTTAC-TCAAG-GTGAACCCAGT--T----------TA-T--CTGT-ATAT-TAAG--TA-AA---AA--G-GCTC-AATCA-C-AAA---T-A--TTACTCAAGGT-GAA-CC---AGT-T-TATC-tgtatattaagtaaaaaggctcaatcacaaatattactcaaggtgaaccagtttatc
gi|4 : ctagccagcttttattgacatgcaagaaaactttgcaagattcgcgaaaacttcatcgttgcaaatatttctcatggcaaaccagtccttgaatgtctgtcatattaagtaaaaaggctcaaaA---AG--G-ACTG-GTTCG-C-GAAGAGA-A--ATATTCGCGAC-GA--CA---AGA-T-TCTC-GCAAATC---T-CG-CGAAA----T--------T-TTCTTGC-AATAAAAGTTGGTTTACAG
gi|4 : TTTGCGAGAAT-CTTGTC----G---TCGCGAATATTT-C-TCTTC-GCGAACC-AGT--CCTT--G--AATG-A--ATA--AAACAGGATTGAA-AA---AA--G-ATTC-AATCG-C-GAA---A-A--TCACTGGCCGC-GAA-CA---CGT-T-GACC-ACATGTG-GATTCG-TGATA----T----AAAGT-AGAC-GCGAACAAAAATTGCTTTAgaatgaataaaacaggattgaaaaaagattcaatcgcgaaaatcactggccgcgaacacgttgaccacatgtggattcgtgatataaagtagacgcgaacaaaaattgcttta
gi|5 : ctgtaaaccaacttttattgcaagaaaatttcgcgagaGAGAAC-CTAATC----A---TTGCGAATATTT-C-TCACC-ACGTACC-GGT--CCTG--T--AATG-T--ATTTTGTATTTATT--TA-AATTTA-----TTTC-GTTCG-T-GAA---A-AATTTGATCAACGC-CAA-CC---AGT-T-CATC-AGATATA-AAT-CA-CGA
gi|6 : aataatctctgaagctcagtgcattgtaacttttattccgcaaacagaattttttcatgaaatttaaTTCATGAAAAC-TTTATC----G---TCGCAAAAATTT-C-TCATC-GCGAACC-AGT--CCTT--G--AATG-T--TTGTC---TACCAC---A-AA---AA--G-GCTC-GATCG-C-GAA---A-A--TTACCCACCAC-GAA-CC---AGT-T-TACC-ACAGGTG-GGT-CG-CGAAA----T----AAAGT-AACC-T----TAAAAGT
gi|7 : gtaaaacaacatttattcgcgtgcacgcgaaaaaaaatcgcgaga---TTGCAAATATTT-C-TTGTC-CCGAACC-AATATTCTT--T--AATA-TACCTTTTATGTTTAA---GA-TA---AT--G---TT-GGTTG-C-GAA---A-A--TTA-------------------GT-T-AATT-ATGGGTA-TAT-CA-AGAAA----T----ACAGTTAGC--ACAAATAAAAGCTGGTTTACAGa
gi|8 : caaatgaaacaaaaaatttattcatgtgcaagaaattttcatgaggtttaTTTTGCGAGATC-CTCATC----G---TCGCGAATATTT-C-TCGTC-GCAAACC-AAT--CCTTTAGTTAATG-T--TTGTCATATATAAT--GA-AA---AA--A-GTTC-GATCG-C-AAA---A-A--TTTCTATCCGC-GAA-CT---AGT-T-TACC-TCGAGTA-AAT-CA-CGAAA----T----AAAGT-TGCC-GCGAATAAAAGTTGGTTTACAGtat
blockSeqs : A TTAA ACT A A T T C AT TAGTT C AC AAACAGGATTGAA TTT CT AG AA G AA GAG T AT A T C ATT C A T A GAA T A . TCTG TAG TG
blockSeqs : . C . G . . . . . G . . CATAGATAATGA . . A A . A T . . G . . . . . . A GA . . . T AG A
blockSeqs : . . . G . . . . . G . . CTTATATAATGA . . A G . G . . . G . . . . . . G GG . . . . AG A
blockSeqs : . . . A . . . . . C . . AGTATATGCTTA . . G G . A . . . A . . . . . . G GA . . . . AG A
blockSeqs : . . . G . . . . . G . . CATGCTAATGAT . . T G . A . . . A . . . . . . T AA . . . . CT A
blockSeqs : . . . G . . . . . G . . CATGCTAATGAT . . A A . A . . . G . . . . . . T AT . . . . CA A
blockSeqs : . . . G . . . . . G . . CATTTGTAATGA . . A G . G . . . A . . . . . . T GA . . . . CT A
blockSeqs : . . . A . . . . . G . . TGTATTTATTTA . . G T . A . . . G . . . . . . A AA . . . . AG G
blockSeqs : . . . A . . . . . G . . CATATATAATGA . . G G . G . . . G . . . . . . A AA . . . . AG G
blockSeqs : . . . A . . . . . T . . CATATTAAGTA . . G G . T . . . G . . . . . . T GG . . . . AG G
blockSeqs : . . . G . . . . . G . . TATGTTTAAGA . . G A . A . . . A . . . . . . A AA . . . . CC G
blockSeqs : . . . G . . . . . G . . ATATTAAGTA . . G C . A . . . A . . . . . . A GG . . . . TT G
blockSeqs : . . A . . . . . T . . CATATAGT . . A A . A . . . G . . . . . . A AT . . . . AG G
blockSeqs : . . A . . . . . G . . CTACCACA . . A A . A . . . G . . . . . . A AA . . . . AA T
blockSeqs : . G . . . . . T . . TAT . . T G . G . . . A . . . . . . G A . . . . TG A
blockSeqs : . . . . . . . . . . TG . . G A . G . . . A . . . . . . G C . . . . . G
blockSeqs : . . . . . . . . . . TG . . G G . G . . . T . . . . . . . . . . .
blockSeqs : . . . . . . G . G . . . . . . . . . .
blockSeqs : . . . . . . G . G . . . . . . . . . .
blockSeqs : G . A . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : G* **** AG*
originalCons : NTTTCGCGAGAAC-CTCATC----G---TCGCGAATATTT-C-TCGTC-GCGAACC-AGT--CCTT--G--AATG-T--CTGTCATATATAAT--GA-AA---AA--G-GCTC-GATCG-C-GAA---A-A--TTACTCGCCGC-GAA-CC---AGT-T-TACC-ACGGGTG-AAT-CG-CGAAA----T----AAAGT-AGCC-GCGAATAAAAGTTGGTTTACAG
finalCons : NTTTCGCGAGAAC-CTCATC----G---TCGCGAATATTT-C-TCGTC-GCGAACC-AGT--CCTT--G--AATG-T--CTGTCATATATAAT--GA-AA---AA--G-GCTCG-ATCG-C-GAA---A-A--TTACTCGCCGC-GAA-CC---AGT-T-TACC-ACGGGTG-AAT-CG-CGAAA----T----AAAGTAG-CC-GCGAATAAAAGTTGGTTTACAG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TTGTTATGTTTTGAAAAATTGATTCCTTATCACAAGAATACGCCGTAAATGAAATTTCCAAATTAAAAAAATGGGTACCTGTAAATGCGAAACGAAATTAAGAAAACAAACAAAACAAAACGAAACAAAATCTACGCCAAACGAAACGAAAATCTGCCAA
Unaligned ( gi|21 ): TGTAAACCAGCTTTTATTTGTGTGTAAGAAATTTTGCCGAGCTTCAGGAGAAACTCATAATTACGAATGTTGCTTGCTGTGAGGCAGCTAGTCCT
Alignments
lowQualScore : 111111111111111
lowQualScore : 3 8888 333 1 2 2 0 2 2 33 88888 2 22 222222222222222 333 22 33 22 1 44 555 1 22 0 1 1 1 333 1 1 2 6 444 2 2 5555 7777 777 22
lowQualScore : . .... ... . . . . . . .. ..... . .. ............... ... .. .. .. . .. ... . .. . . . . ... . . . . ... . . .... .... ... ..
lowQualScore : 1 3333 999 8 2 2 9 2 2 11 00000 0 88 777777777777777 555 88 11 00 8 00 000 8 55 1 4 9 9 333 9 9 0 3 444 2 2 0000 4444 111 66
consensus : NTTTCGCGAGAAC-CTCATC----G---TCGCGAATATTT-C-TCGTC-GCGAACC-AGT--CCTT--G--AATG-T--CTGTCATATATAAT--GA-AA---AA--G-GCTC-GATCG-C-GAA---A-A--TTACTCGCCGC-GAA-CC---AGT-T-TACC-ACGGGTG-AAT-CG-CGAAA----T----AAAGT-AGCC-GCGAATAAAAGTTGGTTTACAG
Reference ( family-1619 ) : NTTTCGCGAGAAC-CTCATC----G---TCGCGAATATTT-C-TCGTC-GCGAACC-AGT--CCTT--G--AATG-T--CTGTCATATATAAT--GA-AA---AA--G-GCTC-GATCG-C-GAA---A-A--TTACTCGCCGC-GAA-CC---AGT-T-TACC-ACGGGTG-AAT-CG-CGAAA----T----AAAGT-AGCC-GCGAATAAAAGTTGGTTTACAG
gi|1 : TTCACGAGAAC-CTCATC----G---TCACGATTATTT-C-TTGTC-GCGAACC-TGT--CCTT--G--AAAG-T--TTGTCATATATAAT--GA-AA---AG--G-GTTC--ATTG-C-AAT---A-A--TTACTCGCCAT-AAA-CC---AGA-T-TACA-ACAAGTG-AAT-CG-GGGTATCTGT----AAAGT------GCGAA
gi|10 : accaactggtgttcacgtacgagaaaaattcgctagaAGAAC-CTCATC----A---TCACAAATATTT-C-TCATT-GCGAACC-AGT--CCTT--G--AAAG-T--CTGTCATAGATAAT--GA-AA---AA--G-ACTC-AATTG-C---A---A-A--TTACTCACTGT-GAA-CC---AGT-T-TACC-ACAGGTG-AAT-TG-TGAAA----T----AAAAC-AGGC-ATGAACCAAAGTTGGTTTACAacgaaatcgaagcgaactgaaacgaaaggaaacgaagtctaccgaaacgaaacctactgaatggaattctacca
gi|11 : TCATT----G---TCGCGAACATTT-C-TTTTT-GCACACC-AGT--CACT--G--AATG-T--TTGTCTTATATAAT--GA-AA---AA--T-ACTT-GATTG-C-AAA---A-A--TTACTTGCCAC-GAA-TG---AGT-T-AACC-ACAGGTG-GAT-CA-CAAAA----T----AAAGT-AGCC-ACAAATAAAAGTTGGTTTACAGa
gi|12 : T--GA-AA---GACTG-GTTC-G--CGGC-GAG---A-A--ATATTC----C-AAA-------GTCT-TAAG-ACGGG---ATT-CT-CGAAT----TTCTGAAA------C-ACGAATAAAAGTTGGTTTACA
gi|12 : CGAGAAT-CCCGTCTTAAGACTTTG-GAATATTT-C-TCGCC-GCGAACC-AGT--CTTT--C--AATG-T--CTAAAGTATATGCT--TA-AG---TA--G-TAGC-GACCA-C-AAA---A-A--TTAGCCGTCAT-ATA-CC---AAT-T-atgtctaaagtatatgcttaagtagtagcgaccacaaaaattagccgtcatataccaatt
gi|13 : tgtaaaccaacttttattcgtgtttcagaaatt---TCACAAATATTA-C-TCAAG-GTGAACC-AGT--T----------TA-T--CTGTCATATA------GT-AA---AA--GAGCTC-AATC--C-AAA---ATA--TTACTCAAGGTTGAA-CC---AGT-TATTCC-ACGGTGG-AAT-TGACAAAA----TT---AAAGT-AGCC-ACGAATAAAAACTGATTTA
gi|14 : aaG-C-AAA---A-A--TTAGTTACTGG-GAA-CC---AGT-T-TATTTACTGGTA-AAT-CA-CAAAA----T----CAAGT-CTTC-ATGGATTATAGTTGGTTTACga
gi|15 : acctcaataaatatttatcagctctgaccttcagtgtcttttttattgaggactatcttagctTTTCGCGCGAAA-CTCATC----G---TCGCGAACATTT-C-TCTTC-GCGAATC-AGT--CCTT--G--AATG-T--CTGTCATGC-TAAT--GATAA---AA--G-ATTC-GTACG-C-GAA---A-A--TTAC
gi|16 : tttaaagcaactttattcacgtgtgaaaaaCATT----A---TCGCGAAAATTT-A-TTGTC-ACGAAAT-AGT--CTTT---------------------TAT--------------------CTC-TAACG-C-AAA---C-A--TTGGTTGCCGC-GAA-GA---AGT-A-AATG-ACTGTTA-TAT-CG-CGAAA----T----AAAGT-CACT--TGGTTAAAAGTTGGCTCACA
gi|17 : TTTCGCGCGAAA-CTCATC----G---TCGCGAACATTT-C-TCTTC-GCGAATC-AGT--CCTT--G--AATG-T--CTGTCATGC-TAAT--GATAA---AA--G-ATTC-GTACG-C-GAA---A-A--TTACa
gi|18 : aaagcaatctttattcacgtgtgagaaaaCTT-GGTCA-T-TAG---A-A--TTAGTCACCAC-AAA-CC---AGT-T-CATC-ACTGGT---AT-TA-CAAAA----C----AAAGT-CTTC-ATGAATGAAAGTTATTTTA
gi|19 : tttagtgcctctcatattgttttgatgattatTT--G--AATG-C--CTGC---------T--G--AA---AA--G-GCTC-AATTG-C-AAA---T-A--TTTCTGGCCGT-GAA-CC---AGT-T-TACC-AC-AGTGAAAT-TG-CGAAA----T----AAAGT-AGCC-GCGAAGAAAAGTTGGTTTACAG
gi|2 : TTTGTGAGAAC-TTGATCC---A---TTGCAAATATTT-C-TTGTC-ACAAATC-AGT--CTTT--G--AATG-T--TTGTCATTTGTAAT--GA-AA---AG--G-GCCC-CATTG-CAAAA---A-A--TTATTAGACGC-AAA-CCATTAAT-T-TACC-ACAGGTG-AAT-CG-CGATA----T----AAAGT-AGCC-GCAAATAAAAGTGGGTATACAGta
gi|20 : cactgcaaagtgaactttaatttgcaggtgaaaaaaaatttcgcgagaTT--G--AATG-C--CTGC---------T--G--AA---AA--G-GCTC-AATTG-C-AAA---T-A--TTTCTGGCCGT-GAA-CC---AGT-T-TACC-ACAGGTA-AAT-TG-CGAAA----T----AAAGT-AGCC-GCGAAGAAAAGTTGGTTTACAG
gi|22 : -GCGCATAAAAGTTGGTTTACta
gi|22 : TCCGCGAGAAT-CTCATC----G---TCGC-AATATTT-C-TCGTC-GCGAATC-AGT--ACTT-----AATGCT--CTttgcgagaaaagtccgcgagaatctcatcgtcgcaatatttctcgtcgcgaatcagtacttaatgctct
gi|23 : gtaaaccaacttttatgcgcttgcgagaaaagTCGC-AGAATACTCATC----G---TCGC-AATATTT-CTTCGTCTGCGA--C-AGT--ACTT--T--AATA-T--
gi|24 : gtaaaccaacttttaggtgctttgcgagagaaagCCCC-AAA-CT---AAT-T-CATC-ACTAGTA-AAT-CG-TGAAA----T----AAAGT-CCTC-GCTGCCGAAAGTTGGTTTGCAG
gi|3 : acaaatatgaTTCGCGAAAAC-TTCATC----G---TTGCAAATATTT-C-TCATG-GCAAACC-AGT--CCTT--G--AATG-T--CTGTCATAT-TAAG--TA-AA---AA--G-GCTCAAATCA-C-AAAT--A-G--TTACTCAAGGT-GAACCC---AGT-T-TATC-ta
gi|3 : ctagccagcttttattgacatgcaagaaaactttgcaaga---TCACAAATAGTTAC-TCAAG-GTGAACCCAGT--T----------TA-T--CTGT-ATAT-TAAG--TA-AA---AA--G-GCTC-AATCA-C-AAA---T-A--TTACTCAAGGT-GAA-CC---AGT-T-TATC-tgtatattaagtaaaaaggctcaatcacaaatattactcaaggtgaaccagtttatc
gi|4 : ctagccagcttttattgacatgcaagaaaactttgcaagattcgcgaaaacttcatcgttgcaaatatttctcatggcaaaccagtccttgaatgtctgtcatattaagtaaaaaggctcaaaA---AG--G-ACTG-GTTCG-C-GAAGAGA-A--ATATTCGCGAC-GA--CA---AGA-T-TCTC-GCAAATC---T-CG-CGAAA----T--------T-TTCTTGC-AATAAAAGTTGGTTTACAG
gi|4 : TTTGCGAGAAT-CTTGTC----G---TCGCGAATATTT-C-TCTTC-GCGAACC-AGT--CCTT--G--AATG-A--ATA--AAACAGGATTGAA-AA---AA--G-ATTC-AATCG-C-GAA---A-A--TCACTGGCCGC-GAA-CA---CGT-T-GACC-ACATGTG-GATTCG-TGATA----T----AAAGT-AGAC-GCGAACAAAAATTGCTTTAgaatgaataaaacaggattgaaaaaagattcaatcgcgaaaatcactggccgcgaacacgttgaccacatgtggattcgtgatataaagtagacgcgaacaaaaattgcttta
gi|5 : ctgtaaaccaacttttattgcaagaaaatttcgcgagaGAGAAC-CTAATC----A---TTGCGAATATTT-C-TCACC-ACGTACC-GGT--CCTG--T--AATG-T--ATTTTGTATTTATT--TA-AATTTA-----TTTC-GTTCG-T-GAA---A-AATTTGATCAACGC-CAA-CC---AGT-T-CATC-AGATATA-AAT-CA-CGA
gi|6 : aataatctctgaagctcagtgcattgtaacttttattccgcaaacagaattttttcatgaaatttaaTTCATGAAAAC-TTTATC----G---TCGCAAAAATTT-C-TCATC-GCGAACC-AGT--CCTT--G--AATG-T--TTGTC---TACCAC---A-AA---AA--G-GCTC-GATCG-C-GAA---A-A--TTACCCACCAC-GAA-CC---AGT-T-TACC-ACAGGTG-GGT-CG-CGAAA----T----AAAGT-AACC-T----TAAAAGT
gi|7 : gtaaaacaacatttattcgcgtgcacgcgaaaaaaaatcgcgaga---TTGCAAATATTT-C-TTGTC-CCGAACC-AATATTCTT--T--AATA-TACCTTTTATGTTTAA---GA-TA---AT--G---TT-GGTTG-C-GAA---A-A--TTA-------------------GT-T-AATT-ATGGGTA-TAT-CA-AGAAA----T----ACAGTTAGC--ACAAATAAAAGCTGGTTTACAGa
gi|8 : caaatgaaacaaaaaatttattcatgtgcaagaaattttcatgaggtttaTTTTGCGAGATC-CTCATC----G---TCGCGAATATTT-C-TCGTC-GCAAACC-AAT--CCTTTAGTTAATG-T--TTGTCATATATAAT--GA-AA---AA--A-GTTC-GATCG-C-AAA---A-A--TTTCTATCCGC-GAA-CT---AGT-T-TACC-TCGAGTA-AAT-CA-CGAAA----T----AAAGT-TGCC-GCGAATAAAAGTTGGTTTACAGtat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TTGTTATGTTTTGAAAAATTGATTCCTTATCACAAGAATACGCCGTAAATGAAATTTCCAAATTAAAAAAATGGGTACCTGTAAATGCGAAACGAAATTAAGAAAACAAACAAAACAAAACGAAACAAAATCTACGCCAAACGAAACGAAAATCTGCCAA
Unaligned ( gi|21 ): TGTAAACCAGCTTTTATTTGTGTGTAAGAAATTTTGCCGAGCTTCAGGAGAAACTCATAATTACGAATGTTGCTTGCTGTGAGGCAGCTAGTCCT