lowQualScore : 1 1 1 11
lowQualScore : 3 3 44 3 6 2 2 44 2 4 4 777 22 6 8
lowQualScore : . . .. . . . . .. . . . ... .. . .
lowQualScore : 2 6 22 1 2 9 9 66 2 5 5 000 33 6 0
consensus : TATTTATTATTTTTCATT-GTAA--TT-TCTTAATTT-CTATTGGT-C-GAAACAACA-CCACGTGAC-TT-TTATAAA---TAATG-TATAGACC-TGATGTTTCCTAAGA
Reference ( gi|4 ) : TATTTATTATTTTTCATT-GTAA--TT-TCTTAATTT-CTATTGGT-C-GAAACAACA-TCACCTGAC-TT-TTATAAA---CAATG-AATTGACC-TGATGTTTCCTAAAA
gi|2 : TATTTATTATTTT-CATT-GTAA--TT-TCTTAATT--CTATTGGT-C-GAAACAACA-TCACCTGACTTT-TTATTAA---CAATG-AATTGACC-TGATGTTTCCTAA
gi|9 : gatataaTAATTATTATTTTTCATA-GTTA--TT-TTTTAATTT-TTATTGGT-C-GAAACAACA-TCACTTGAC-TT-
gi|3 : cataaataaaacTATTTATT----TTCATT-GTA---TT-TCTTAATTTATTATTGGT-TTGAAACAACA-CCACGTGAC-TT-ATTTAAA---TAATG-TATAGACCTTGATG
gi|1 : tagataatgaaatTTATTATTTTTCATT-GTAA--TT-TCTTAATTT-ATATTGGT-T-GAAACAACA-CCACGTGAC-TTATTTTAAA---TAATG-TATAGACC-TGATGTTTCCTAAAA
gi|7 : tatagataaatgaaaTTATTATTTTTCATTTGTAA--TT-TTCTCATTT-CTATTGGT-C-GAAAC-ACAGCCACATGACTTT-TTATAAAAACCAATG-c
gi|13 : aTTATTATTTTTCATT-GTAA--TT-TCTTAA-----TATTGGT----GAACAACA-T
gi|10 : aATTATTTTTCATT-GTAAAATG-TCTGAATTT-CTATTGGC-C-GAAACAACA-CCACATGAC-TTATTATAAA---TAATG-aatg
gi|8 : TTATTTT-CATT-GTAA--TTGCCTTAATTTTCTATTGGTTC-GAAACAACA-CCACATGGC-TTATTATAAA---TAATG-TAT
gi|14 : TTGCATT-GTAA--TT-TCTTAATTT-CTATTAGT-C-GAAACAACA-CCACGTGa
gi|5 : TCATT-GTAA--TT-TTTTAATTT-CTATTGGT-C-GAAACAACA-CCACATGAC-TTATTATAAA---TAATGTTATAGACC-TGATGTTT
gi|6 : ATC-GTAG--GT-TCTTAATTT-CTATTGGT-C-GAAACAACA-TCAa
gi|11 : gaagaatacagtgtattatcttaaatatttctgatgaaTAA--TT-TCTAGAT---CTATTGGT-C-GAAACACCA-CCACGTGAC-TT-ATA
gi|12 : A--TT-TCTTCATTT-CTATTGGT-C-GAAACAACA-CCACATGACTTT-TTATAAA---CAATG-gcgaataacggtatagactt
gi|15 : TGGT-T-AAAACAACA-CCACATGACTTT-TTATGGA---TAATG-
gi|16 : TATAAA---CAATG-AATTGACC-AGATGTTTCCTAAGA
Alignments
lowQualScore : 1 1
lowQualScore : 2 3 33 2 5 2 2 2 3 3 3 3 3 44 0 5 0
lowQualScore : . . .. . . . . . . . . . . .. . . .
lowQualScore : 1 3 99 9 7 7 7 7 2 3 3 3 6 44 8 7 7
consensus : TATTTATTATTTTTCATT-GTAA--TT-TCTTAATTT-CTATTGGT-C-GAAACAACA-CCACGTGAC-TT-TTA-TAAATAAT-G-TATAGACC-TGATGTTTCCTAAAA
Reference ( family-1617 ) : TATTTATTATTTTTCATT-GTAA--TT-TCTTAATTT-CTATTGGT-C-GAAACAACA-CCACGTGAC-TT-TTA-TAAATAAT-G-TATAGACC-TGATGTTTCCTAAGA
gi|1 : TTATTATTTTTCATT-GTAA--TT-TCTTAATTT-ATATTGGT-T-GAAACAACA-CCACGTGAC-TTATTT-TAAATAAT-G-TATAGACC-TGATGTTTCCTAAAA
gi|10 : tatagataaatgaaaATTATTTTTCATT-GTAAAATG-TCTGAATTT-CTATTGGC-C-GAAACAACA-CCACATGAC-TTATTA-TAAATAAT-G-c
gi|11 : TAA--TT-TCTAGAT---CTATTGGT-C-GAAACACCA-CCACGTGAC-TT-ATAGCGAATAACGG-TATAGACT-
gi|12 : A--TT-TCTTCATTT-CTATTGGT-C-GAAACAACA-CCACATGACTTT-TTA-TAAACAAT-G-
gi|13 : TTATTATTTTTCATT-GTAA--TT-TCTTAA-----TATTGGT----GAACAACA-
gi|14 : aTTGCATT-GTAA--TT-TCTTAATTT-CTATTAGT-C-GAAACAACA-CCACGTGtaatg
gi|15 : TGGT-T-AAAACAACA-CCACATGACTTT-TTA-TGGATAAT-G-
gi|16 : TA-TAAACAAT-G-AATTGACC-AGATGTTTCCTAAGA
gi|2 : TATTTATTATTTT-CATT-GTAA--TT-TCTTAATT--CTATTGGT-C-GAAACAACA-TCACCTGACTTT-TTA-TTAACAAT-G-AATTGACC-TGATGTTTCCTAAt
gi|3 : gatataaTATTTATT----TTCATT-GTA---TT-TCTTAATTTATTATTGGT-TTGAAACAACA-CCACGTGAC-TT-ATT-TAAATAAT-G-TATAGACCTTGATG
gi|4 : tagataatgaaatTATTTATTATTTTTCATT-GTAA--TT-TCTTAATTT-CTATTGGT-C-GAAACAACA-TCACCTGAC-TT-TTA-TAAACAAT-G-AATTGACC-TGATGTTTCCTAAAA
gi|5 : TCATT-GTAA--TT-TTTTAATTT-CTATTGGT-C-GAAACAACA-CCACATGAC-TTATTA-TAAATAAT-GTTATAGACC-TGATGTTT
gi|6 : ATC-GTAG--GT-TCTTAATTT-CTATTGGT-C-GAAACAACA-TCAa
gi|7 : gaagaatacagtgtattatcttaaatatttctgatgaaTTATTATTTTTCATTTGTAA--TT-TTCTCATTT-CTATTGGT-C-GAAAC-ACAGCCACATGACTTT-TTA-TAAA
gi|8 : aTTATTTT-CATT-GTAA--TTGCCTTAATTTTCTATTGGTTC-GAAACAACA-CCACATGGC-TTATTA-TAAATAAT-G-TATAaaccaatg
gi|9 : TAATTATTATTTTTCATA-GTTA--TT-TTTTAATTT-TTATTGGT-C-GAAACAACA-TCACTTGAC-TT-
Alignments
lowQualScore : 1 1
lowQualScore : 2 3 33 2 5 2 2 2 3 3 3 3 3 44 0 5
lowQualScore : . . .. . . . . . . . . . . .. . .
lowQualScore : 1 3 99 9 7 7 7 7 2 3 3 3 6 44 8 7
consensus : TATTTATTATTTTTCATT-GTAA--TT-TCTTAATTT-CTATTGGT-C-GAAACAACA-CCACGTGAC-TT-TTA-TAAATAAT-G-TATAGACC-TGATGTTTCCTAAAA
Reference ( family-1617 ) : TATTTATTATTTTTCATT-GTAA--TT-TCTTAATTT-CTATTGGT-C-GAAACAACA-CCACGTGAC-TT-TTA-TAAATAAT-G-TATAGACC-TGATGTTTCCTAAAA
gi|1 : TTATTATTTTTCATT-GTAA--TT-TCTTAATTT-ATATTGGT-T-GAAACAACA-CCACGTGAC-TTATTT-TAAATAAT-G-TATAGACC-TGATGTTTCCTAAAA
gi|10 : tatagataaatgaaaATTATTTTTCATT-GTAAAATG-TCTGAATTT-CTATTGGC-C-GAAACAACA-CCACATGAC-TTATTA-TAAATAAT-G-c
gi|11 : TAA--TT-TCTAGAT---CTATTGGT-C-GAAACACCA-CCACGTGAC-TT-ATAGCGAATAACGG-TATAGACT-
gi|12 : A--TT-TCTTCATTT-CTATTGGT-C-GAAACAACA-CCACATGACTTT-TTA-TAAACAAT-G-
gi|13 : TTATTATTTTTCATT-GTAA--TT-TCTTAA-----TATTGGT----GAACAACA-
gi|14 : aTTGCATT-GTAA--TT-TCTTAATTT-CTATTAGT-C-GAAACAACA-CCACGTGtaatg
gi|15 : TGGT-T-AAAACAACA-CCACATGACTTT-TTA-TGGATAAT-G-
gi|16 : TA-TAAACAAT-G-AATTGACC-AGATGTTTCCTAAGA
gi|2 : TATTTATTATTTT-CATT-GTAA--TT-TCTTAATT--CTATTGGT-C-GAAACAACA-TCACCTGACTTT-TTA-TTAACAAT-G-AATTGACC-TGATGTTTCCTAAt
gi|3 : gatataaTATTTATT----TTCATT-GTA---TT-TCTTAATTTATTATTGGT-TTGAAACAACA-CCACGTGAC-TT-ATT-TAAATAAT-G-TATAGACCTTGATG
gi|4 : tagataatgaaatTATTTATTATTTTTCATT-GTAA--TT-TCTTAATTT-CTATTGGT-C-GAAACAACA-TCACCTGAC-TT-TTA-TAAACAAT-G-AATTGACC-TGATGTTTCCTAAAA
gi|5 : TCATT-GTAA--TT-TTTTAATTT-CTATTGGT-C-GAAACAACA-CCACATGAC-TTATTA-TAAATAAT-GTTATAGACC-TGATGTTT
gi|6 : ATC-GTAG--GT-TCTTAATTT-CTATTGGT-C-GAAACAACA-TCAa
gi|7 : gaagaatacagtgtattatcttaaatatttctgatgaaTTATTATTTTTCATTTGTAA--TT-TTCTCATTT-CTATTGGT-C-GAAAC-ACAGCCACATGACTTT-TTA-TAAA
gi|8 : aTTATTTT-CATT-GTAA--TTGCCTTAATTTTCTATTGGTTC-GAAACAACA-CCACATGGC-TTATTA-TAAATAAT-G-TATAaaccaatg
gi|9 : TAATTATTATTTTTCATA-GTTA--TT-TTTTAATTT-TTATTGGT-C-GAAACAACA-TCACTTGAC-TT-
blockSeqs : T T AA G A T T G A T A G G TT T
blockSeqs : T . . . T . . . G T A . . T .
blockSeqs : G . . . . . . . A T A . . A .
blockSeqs : T . . . . . . . G T . . . A .
blockSeqs : T . . . . . . . A . . . . T .
blockSeqs : T . . . . . . . C . . . . A .
blockSeqs : T . . . . . . . G . . . . T
blockSeqs : T . . . . . . . C . . . .
blockSeqs : . . . . . . . . A . . . .
blockSeqs : . . . . . . . . A . . . .
blockSeqs : . . . . . . . A . . .
blockSeqs : . . . . . . T
blockSeqs : . . . . . .
blockSeqs : . . .
blockSeqCons :
originalCons : TATTTATTATTTTTCATT-GTAA--TT-TCTTAATTT-CTATTGGT-C-GAAACAACA-CCACGTGAC-TT-TTA-TAAATAAT-G-TATAGACC-TGATGTTTCCTAAAA
finalCons : TATTTATTATTTTTCATT-GTAA--TT-TCTTAATTT-CTATTGGT-C-GAAACAACA-CCACGTGAC-TT-TTA-TAAATAAT-G-TATAGACC-TGATGTTTCCTAAAA
Alignments
lowQualScore : 1 1
lowQualScore : 2 3 33 2 5 2 2 2 3 3 3 3 3 44 0 5
lowQualScore : . . .. . . . . . . . . . . .. . .
lowQualScore : 1 3 99 9 7 7 7 7 2 3 3 3 6 44 8 7
consensus : TATTTATTATTTTTCATT-GTAA--TT-TCTTAATTT-CTATTGGT-C-GAAACAACA-CCACGTGAC-TT-TTA-TAAATAAT-G-TATAGACC-TGATGTTTCCTAAAA
Reference ( family-1617 ) : TATTTATTATTTTTCATT-GTAA--TT-TCTTAATTT-CTATTGGT-C-GAAACAACA-CCACGTGAC-TT-TTA-TAAATAAT-G-TATAGACC-TGATGTTTCCTAAAA
gi|1 : TTATTATTTTTCATT-GTAA--TT-TCTTAATTT-ATATTGGT-T-GAAACAACA-CCACGTGAC-TTATTT-TAAATAAT-G-TATAGACC-TGATGTTTCCTAAAA
gi|10 : tatagataaatgaaaATTATTTTTCATT-GTAAAATG-TCTGAATTT-CTATTGGC-C-GAAACAACA-CCACATGAC-TTATTA-TAAATAAT-G-c
gi|11 : TAA--TT-TCTAGAT---CTATTGGT-C-GAAACACCA-CCACGTGAC-TT-ATAGCGAATAACGG-TATAGACT-
gi|12 : A--TT-TCTTCATTT-CTATTGGT-C-GAAACAACA-CCACATGACTTT-TTA-TAAACAAT-G-
gi|13 : TTATTATTTTTCATT-GTAA--TT-TCTTAA-----TATTGGT----GAACAACA-
gi|14 : aTTGCATT-GTAA--TT-TCTTAATTT-CTATTAGT-C-GAAACAACA-CCACGTGtaatg
gi|15 : TGGT-T-AAAACAACA-CCACATGACTTT-TTA-TGGATAAT-G-
gi|16 : TA-TAAACAAT-G-AATTGACC-AGATGTTTCCTAAGA
gi|2 : TATTTATTATTTT-CATT-GTAA--TT-TCTTAATT--CTATTGGT-C-GAAACAACA-TCACCTGACTTT-TTA-TTAACAAT-G-AATTGACC-TGATGTTTCCTAAt
gi|3 : gatataaTATTTATT----TTCATT-GTA---TT-TCTTAATTTATTATTGGT-TTGAAACAACA-CCACGTGAC-TT-ATT-TAAATAAT-G-TATAGACCTTGATG
gi|4 : tagataatgaaatTATTTATTATTTTTCATT-GTAA--TT-TCTTAATTT-CTATTGGT-C-GAAACAACA-TCACCTGAC-TT-TTA-TAAACAAT-G-AATTGACC-TGATGTTTCCTAAAA
gi|5 : TCATT-GTAA--TT-TTTTAATTT-CTATTGGT-C-GAAACAACA-CCACATGAC-TTATTA-TAAATAAT-GTTATAGACC-TGATGTTT
gi|6 : ATC-GTAG--GT-TCTTAATTT-CTATTGGT-C-GAAACAACA-TCAa
gi|7 : gaagaatacagtgtattatcttaaatatttctgatgaaTTATTATTTTTCATTTGTAA--TT-TTCTCATTT-CTATTGGT-C-GAAAC-ACAGCCACATGACTTT-TTA-TAAA
gi|8 : aTTATTTT-CATT-GTAA--TTGCCTTAATTTTCTATTGGTTC-GAAACAACA-CCACATGGC-TTATTA-TAAATAAT-G-TATAaaccaatg
gi|9 : TAATTATTATTTTTCATA-GTTA--TT-TTTTAATTT-TTATTGGT-C-GAAACAACA-TCACTTGAC-TT-