lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 444444444444444 111 11 1111111 1 111 11111111111111111111111111111111111111111111111111111111111111111111111 22222 1111111111 1111111111 777777777777777777777777777777777777777777777777777777777777777777777 1111111111111 11111111 1 11111111 1 111111 2222
lowQualScore : 6 000 111111111111111 777 4 66 3 999 5 44 4 4 4 2 99 2222222 4 8888 4 3 222 1 88 88888888888888888888888888888888888888888888888888888888888888888888888 99 11111 777 3 5555555555 9999999999 3 666666666666666666666666666666666666666666666666666666666666666666666 8888888888888 55 0 55555555 3 7777 44 555 5 3 0 3 44 3 33333333 3 3 3 0 222222 0 4 55 0 66 0000 2
lowQualScore : . ... ............... ... . .. . ... . .. . . . . .. ....... . .... . . ... . .. ....................................................................... .. ..... ... . .......... .......... . ..................................................................... ............. .. . ........ . .... .. ... . . . . .. . ........ . . . . ...... . . .. . .. .... .
lowQualScore : 7 555 666666666666666 888 4 11 1 000 7 88 4 4 4 7 33 1111111 4 4444 4 7 222 7 00 33333333333333333333333333333333333333333333333333333333333333333333333 55 77777 000 6 9999999999 7777777777 3 333333333333333333333333333333333333333333333333333333333333333333333 5555555555555 88 2 44444444 6 1111 66 444 5 1 2 3 66 3 33333333 3 3 3 3 222222 5 4 33 4 77 8888 8
consensus : TTTTTTA-AATTCCTCCCAAA-CATGANA-A-NAA-TCAA---A-A--CGG-GGTGCCTTATT-G-ATCATAA-ATCTCCTT-CACAGGT-C---CACAAA-TTTC--AA-TTTTTGC---AACAAA-TTGN-G-AG-GTAAACCTGAN------TTTTT----CATTTGN----AGCT-TATTT---AAA---T-A--T-GAGG--TAAG----CTTTG---ACCAAATT-GAA----------AGTCCAAN---------TATACA-TTAATGC---ACT-G------------------------G----T--TTGG--ATT--TG---TTTTT-N---CTCT--A--C-------TT-CTTTGT--A-TG-AAA-CG----TTT--TTC---CCAATT-TCAAGC-AAA--TG-TCGC----T-AAT-T-TTT-CCCAAC----CGGAAAGGCCCTGGCCCCT-GATATC-AAGAC-CT----AAAAAATCC
Reference ( gi|6 ) : TTTTTTA-AATTCCTCCCAAA---TGAAA-AATAA-TTAA---A-A--TAG-TATGCCTTAGT-G-ATCATAA-ATCTTCTC-CACAGGC-C---CACAAA-TTTT--AA-TTTATGC---AGCAAA-TTGC-G-AG-GTGAACCTGAC------TTTTT---CCATTTGA----AGAT-TATTT---AAA---T-A--T-GAGG--TAAG----GTTTG---ACCAAATT-GAA----------AGTCCAAA---------TATACA-TTAACGA---ATT-G------------------------G----T--TTAA--ATT--TG---TTTTT-A-A-CTCT--A--C-------TT-CTTTGT--A-TG-GAA-CG----TTT--TTC---CGAATT-TCAAGC-AAA--TG-TCGC----T-GAT-T-TTT-CACAAT----CGGAAAGGCCCTGGCCCCT-GATATC-AAAAC-CT----AAGAAATCC
gi|3 : TTTTTCC-AATTT-TCCCAAA---C-----------TCAA---A-A--CAG-GGTGATTTATT-G-ATCATAA-ACCTCCTT-TACAGGT-CTGTCACAAATTTTT--AATTTTTTGC---GACAAA-CTGT-G-AA-GTAAACCGAATTG----TTTTT---GCATC-------AGCG-CATTTAAAAAA---T-ATCT-GAGGTATAAGCTTAATTTG---ACCAAAGT-GAA----------AGTCCATT---------TATACA-TTAATGC---ACT-G------------------------G----T--TT----GTT--TGGTTTTTTT-T-C-CTCTCAA--T-------TT-CTTTGT--A-TG-AAA-TA----TTT--TTC---AAAATT-TCAAAC-AAA--TG-CCAC----T-AATAT-ATT-C-CAAT----TAGAAAGGCCATGGGCCCT-GCTATC-AAGAC-CT----AA
gi|1 : ggccaatataaagccccattcccaatgcaaaaagcaggtatTTTTAGAATTCC---CAAAACATGACA-ATAAA-TCAA---A-A--TGG-GGTGCCTTAAT-A-GCGACAA--TCTCTTT-CACAGGT-C---CATGAA-TTTT--AA-TTTTTAC---AGCAAA-TTGA-G-AA-GCAAA--TGAAAAAAAATT--------ATTTGGCTTCAGCT-TATAT---AAA---T-A-----AGG--TAAG----CTTTATTAATCAAATT-GAA----------AGTCCAGT---------TGTACA-TCAATGC---ACT-G------------------------G----T--TTGGT-ACT--T-----TCTT-G---CTCT-------------CT-CTCTGT--A-TT-AAA-CT----TTT--TTC---CCAATT-TCAAAC-AAA--TG-TCGC----T-AGT-T-TTT-------------------CTTTGGCCCCA-GATATT-AAGACTTT----AAAAAATCacaaaa
gi|9 : ttaggggccgaaataaggccccattaccattgctataaagcagataattttttcttaatttttgTTTTG-AATTCC--CCAAAACATGACA-A-TAA-ATGA---ATA--TGA-GGTGCATTACT-A-ATCATAA-ATCCTCAT-CACAGGT-T---CAAAAA-TTTC--AA-ATTCTGC---AACAAA-TTGA-G-AA-GCAAA--TGAA------TTATT------TTTGGCCTCAGTT-TATCT---AAA---T-A-----AAG--TAAG----CTTCA---ACCAGATT-AAG----------AGTCCATT---------TATACA-TTAATGG---GCT-G------------------------G----T---------TT--TGC--TCTTT-C-T-CTCT--A--T-------TT-CTCTGT--A-tctgaaat
gi|15 : ggtctgtcaggggccgaaataaggccccatttccaatgctaaaaagcaggtattttttttcccaattttagcTTTAA-AATTCCT---AAA-----GAA-TGTGA-TCAA---A-G--CAG-GGTGACTTATT-G-ATCATAA-ATCTCATT-CACAG
gi|5 : ataggggctgaaataaggccccactatcaatgcataaaagcaggtgttttcttcaacttttgcTTTA-AATT--TCCCAAACTATGAATTAATA--TCAA---A-G--CAGGTAGGC-TTGTT-G-TTCATAA-ACCTCTTA-CACAG--------ATAA-----C--AA-TTTTTGC---ATCAAA---------G-G-AAACCTAAT------TTTTTGG-CC-TCTGC-------T-TAATT---AGA---C----T--AGG--TAAG----CTTTG---GCCAAAC--GAA----------AGTCGAAAAAATCTAATTATACC-ATAATGC---AAT-G------------------------G----T--TTAA--ATT--T----TT--------CCCT--A--C-------TT-CTttaca
gi|4 : gggtctgtaaggggccaaaataagattccattcccaatgctaaaaacagatattgttccaattttacA-ATTTCCACCCAAA---TGAGA-AAAAT-TTAA---A-A--T---------TT-GT-GGATCAATA-ATCTCCTTTCACAGAC-C---CACAAA-TTTC--AA-TTTTTGCA--AGCAAA--TGT-G-AG-GTAAACC-AAC------CTTTT---TTGCCT-C----AGCT-TATTT---AAA---A-A--T-GAGGA-TAA-----ATTTG---ACCAAATTGGAA----------AGTCCAAA---------TTTACATTTAATGA---ACT-A-------------------------------------------TG---TTCCT-G-GTCTCT--A--C-------TT-TTTTG------G-GGG-AG----TTT--TTCCCTCAAACT---AAGCAAAA--TG-TCGC----T-GAT-T-TTTCCGCAAC----CAG-AAGGTCTTGCCTCCT-GATATCTAAAAC-caaacaaatgtcactatcacgaccttacagaaaccctggcatcatgtatct
gi|8 : ttagggttgttagacgggatgaaatagggccccattcccagtgctgcaaaacaggtatttcccccaattttcgcttaacCCTCCCAAA---TGAAA-AATAAATTAACTTA-AGTTAG-TATGCCTT--TAG-ACCTCAACATCTTCTC----AGGTTC---CACAAA-TTATGCAA-TTTATGTGCTAGCAAAATTGCAG-AGCGTGAACCTGAA------CTTTT---CCATTT-A----AGATATATTT---AAAGGTTGA--T-GAGG--TAAG----GTT-G---ACCAAATT-GAA-----------GTC-AAA---------TATACA-TTGA--A---ATTAG------------------------G----TGGTTAA--ATT--TG---TTTTTTA-A-CTCT--A--C-------TTTCTTTGT--AATGCGAA-CG----TTT--TTT---CGACAT-TCAGCC------TGGTCG-------GAT-T-TTT-CACAAT----CGGAAAGGCCCTGGCCCGT-GATATC-GAA
gi|10 : CCCAAAACATGACA-ATAAA-TCAA---A-A--TGG-GTTACATTACT-A-ATTATAA-ATATCCTT-CTCAGGT-C---CATAAA-TTTT----------GC---AACAAA-TTGA-G-ATTGCAAA--TGATATTA--TTTTT---GCCTC-------AGCT-TATT-----AG---T-A-----AGA--TAAG----TTTTA---ACCAAATT-GAA----------AGTCCAAT---------TATACA-TTAATGC---AAT-G------------------------G----T--TTGG--TTC--TC---TCTCT-A------T--A--C-------TT-ATCTAT----TA-AAATTG----TTT--TTC---CCAATT-TCAAGC-AGA--TG-TGGCTACTT-AAT-T-CTT-CCCAAC----TGGAAAGGCCCTGGCCCCT-GATATA-AAgt
gi|7 : CCAAAA---TGAAA-A-CAA-TTGA---A-A--TGG-GGTGCCTTATT-G-ATCATAA-ACCTCCTT-CACAGTC-T---T-CAGA-TTTC--CA-TTTTTGC---AACAAC-TT--------GTG--------------------------TTGA----AAAT-C---T---AAA------------GA--TA---------TG---AATAAATC-AAA----------AGTCCAAT---------CATACA-TGTAC-----ATT-A------------------------GGTCAT--TTAA--GT----G---ATATT-AGA-TTTT--A--C-------TT------------G-AAA-TG----TTT--TTC---CCAATT-TCAACC-AAAGCTG-TTAT----TTAAT-T-TTT-CCCAAT----TGGAATTGCCCTGGCCCCT-GATATG-AAGGC-GTAAACAAGAAAT
gi|2 : gccactgctataaagcaggtattttacccaatgtttgctctaaaataaaaaaaCTT-CACAGGT-C---TTCTGA-TTAA--CA-TTTTTGC---AACGAA-TTGT-GTAG-ATAAACTAAAA----------------ATTCGA----ACAA-AATTC---AAG---T-C--CAGTGG--TACG------TTA---A------T-GAA----------AAGGCAAA---------GATA-A-TTAATGT---ACT-G------------------------G----T--TTGG--ATT--T-----TTTT-----CTCT--A---------------TTGT--A-TG-AAA-TG----TTT--ATC---CCAATT-TCAAGC-AAA--TG-TTGC----T-TAT-T-TTT-CCCAAC----TGGAAAGGCCCTGGCCCCT-GATATT-AAGAC-CT----AAAAAATCC
gi|11 : gtctgtaggggggtgaaataaggccccattcccaatgctaaaaagcaggcatttttcccaatttttgctcaataattgttccgaattgaaaataaaacatggtg-G-AA-GTAAGTCAGAT------TTCTTTGGCCATT--------GCT-TATTT---AAA---T------GAGG--TCAG----CTTTG---ACCAAATT-AAAAGTCACAAGGAGTCCAAT---------TATACC-TTGATGC---ATT-GTTTGGTTTTGGGGGGGGGGGGGTTG----T--TTTG--TTT--TG---TTTTT-G-T-TTCT--T--TGTTTTTGTT-CTTCGT--A-TG-AAA-CA----TTTTCTTC---C-AATT-TCAAGC-AGA--TA-TTG-----T-AAT-T-TTT-CCCAAT----TGGTAAGGCctgtattatctcatcataagaaaactgaagatca
gi|16 : caaaaaaatttcaagaactctCCAAAAT-CAA----------AATCCAAA---------TATACA-TTAATGT---ACT-G------------------------G----T--TCG---------G---TTTTT-A-T-CTCT--A--C-------TT-CCAAGCAAA-TG---A-CGCAAATTT--TTC---CCAATT-
gi|14 : TACA-TTAATTGTTTATT-G-----------------------------T--TTAATAATTGTTG---TTTTT------TCT--A----------TA-ATTAGT--T-CG-AAA-TA----AAT--TTC---C-AATT-TCAACC-AAA--TG-TCGT-------AT-T-TTT-CCCAAA----TATGATGGCCCTGGCCCCTGGAT-TC-AAATG-GTA---AAAAAATCCgtaaa
gi|13 : TT--TG---GTTCT-C-T-CTCT--ATAC-------TT-GTCTAT--T-AA-AAA-CG----TTT--TTC---CCAATT-TATAGC-AAA--TA-TCGC----T-AAA-TATTT-CCCAAA----TGGAATGTCCCTGGCCCCT-GATACT-AAGAC-CT----AAAAAActgggtctatacatcgaaagcagctgacagatc
gi|5 : g----TTT--TCC---CTACTTCTCAAAC-AAA--TG-TCAC----T-A-------T-CACGACCTTACAGAAA--CCCTGGCatctgtcatggacctcactcatcatatcgggaatggtgggaaaacgttgaccaaattat
gi|20 : gggtctgtaaggggccaaaataagattccattcccaatgctaaaaacagatattgttccaattttactttaaatttcccaaactatgaattaatatcaaagcaggtaggcttgttgttcataaacctcttacacagataacaatttttgcatcaaaggaaacctaattttttggcctctgcttaattagactaggtaagctttggccaaacgaaagtcgaaaaaatctaattataccataatgcaatggtttaaatTC---CCAGTT-TAAAGC-AAA--TG-TCGC----T-AAT-T-TAT-CACGGT----TGGAAAGGACCTGGCCCCatcatgtatct
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): TTTTTTTAGGGATCTGTTGCAGGGAGCTCCATCGACAAAAATAGAGGCCCCATTTCCAGTACCGCACTAAAATTATGAGTACTTTGAATCACGTACCAATTTAGTTGTAAATAAATAAATTCCCACTAATACATGGAAAAAATAAATCAAAATGAGGTGGCAATTTGTAACTTAATCATAAATCTATAGCACAGGT
Unaligned ( gi|17 ): GGGGGGGGGGGGGTTATGGTCTTTTAAAAGCTAATGTACTGCCCCACTCCAAAGTGCTAAATAAATGTGTGTATTTCTCCCAAT
Unaligned ( gi|18 ): TAGAGAGCCAAAATAATGCCCCATTCCCAAAGCTAAAAAGCACGTATTGTCCCTAATTTTTGCTTTAAAATTCGGAA
Unaligned ( gi|19 ): AAGAGTGTGTAGAGAGCTGAAACGAGGTCCCATTTCATATACTAGAAAGCAGGTAATTTGGTCAATTATT
Unaligned ( gi|21 ): TTTTTAAGGGTCTGTGAAGGGTCCAAAATAAGATTCCATTCCAATGCTAAAAAGNAA
Unaligned ( gi|22 ): ATCATATAAGTCAAGAATGTCTGGGAAGTCGCTCAACTTGT
Alignments
lowQualScore : 222 1111111111111 6666666666666666666666666666666666666666666666 3333333333 111111111 1111111111 55555555555555555555555555555555555555555555555 222222 111111
lowQualScore : 5 6 0 3 000 777 4444444444444 666 8888 1 666 7777 3 7777 33 77777 4 999 888 3 3 3 66 55 8888 1 4444444444444444444444444444444444444444444444 55 1111111111 3 55 4 444444444 999999 3 44 4444444444 1 3 44 3 555 0 3 33333333333333333333333333333333333333333333333 333333 33 33 444 000000 0 66 3 44 3 6666 3 44 3 999999 3 3 77 4 4 5 5
lowQualScore : . . . . ... ... ............. ... .... . ... .... . .... .. ..... . ... ... . . . .. .. .... . .............................................. .. .......... . .. . ......... ...... . .. .......... . . .. . ... . . ............................................... ...... .. .. ... ...... . .. . .. . .... . .. . ...... . . .. . . . .
lowQualScore : 0 4 5 6 555 333 5555555555555 444 5555 4 444 1111 3 1111 88 22222 0 999 666 6 6 6 33 99 9999 7 1111111111111111111111111111111111111111111111 00 1111111111 6 00 3 222222222 666666 3 66 6666666666 0 1 22 1 666 7 1 99999999999999999999999999999999999999999999999 555555 99 99 555 111111 2 55 3 22 1 9999 1 22 1 888888 1 1 44 0 0 0 7
consensus : TTTTTTA-AATTCCTCCCAA-AC-ATGAA--AAN--AA-T----C-AA---AA--CGGGGTGCC---TTAT----TGATCATAA-ATC----TCCTT-CACAGGT-C---CACAAATT-T-C-AATTT-T-T-GC-AA-CAAA-TTGC-G-AG-GTAAACCTGAN------TT-T-TT----C-GTTTG----C---A---GCT-TATTTAA--A---T-AT--GAGG-TA--AGCTT----TG---ACCAAA------TT-GAAAG--TC----------CAATTATACA-TT--AAT-GC--ACT-G------------------------GTTTG---G--ATT--T--GT--TTTT--T---CTC--T--A--CTT-----CTTTGTA-TG-AAA-CGTTTT-TCCC---AATTTCAAGC-AAA--TG-TCG-C----TAATT-TTTCC-CAATTGGAAAGGCCCTGGCCCCT-GATATC-AAGAC-CT-AAAAAATCC
Reference ( family-16 ) : TTTTTTA-AATTCCTCCCAA-AC-ATGAN--AAN--AA-T----C-AA---AA--CGGGGTGCC---TTAT----TGATCATAA-ATC----TCCTT-CACAGGT-C---CACAAATT-T-C-AATTT-T-T-GC-AA-CAAA-TTGN-G-AG-GTAAACCTGAN------TT-T-TT----C-ATTTG----N---A---GCT-TATTTAA--A---T-AT--GAGG-TA--AGCTT----TG---ACCAAA------TT-GAAAG--TC----------CAANTATACA-TT--AAT-GC--ACT-G------------------------GTTTG---G--ATT--T--GT--TTTT--N---CTC--T--A--CTT-----CTTTGTA-TG-AAA-CGTTTT-TCCC---AATTTCAAGC-AAA--TG-TCG-C----TAATT-TTTCC-CAACCGGAAAGGCCCTGGCCCCT-GATATC-AAGAC-CT-AAAAAATCC
gi|1 : TTTTAGAATTCC--CAAA-AC-ATGAC--AAT--AAAT----C-AA---AA--TGGGGTGCC---TTAA----TAGCGACAA--TC----TCTTT-CACAGGT-C---CATGAATT-T-T-AATTT-T-T-AC-AG-CAAA-TTGA-G-AA-GCAAA--TGAAAAAAAATTAT-TT----G-GCTT-----C---A---GCT-TATATAA--A---T-A----AGG-TA--AGCTT----TATTAATCAAA------TT-GAAAG--TC----------CAGTTGTACA-TC--AAT-GC--ACT-G------------------------GTTTG---GT-ACT--T------TCTT--G---CTC--T------CT-----CTCTGTA-TT-AAA-CTTTTT-TCCC---AATTTCAAAC-AAA--TG-TCG-C----TAGTT-TTT---------------CTTTGGCCCCA-GATATT-AAGACTTT-AAAAAATC
gi|10 : ttaggggccgaaataaggccccattaccattgctataaagcagataattttttcttaatttttgCCAAA-AC-ATGAC--AAT--AAAT----C-AA---AA--TGGGTTACA---TTAC----TAATTATAA-ATA----TCCTT-CTCAGGT-C---CATAAATT-T-----------T-GC-AA-CAAA-TTGA-G-ATTGCAAA--TGAT------AT-TATT-------TTTG----CCTCA---GCT-TATT--A--G---T-A----AGA-TA--AGTTT----TA---ACCAAA------TT-GAAAG--TC----------CAATTATACA-TT--AAT-GC--AAT-G------------------------GTTTG--------------GT--TCTC--T---CTCTAT--A--CTT-----ATCTAT--TA-AAATTGTTTT-TCCC---AATTTCAAGC-AGA--TG-TGG-CTACTTAATT-CTTCC-CAACTGGAAAGGCCCTGGCCCCT-GATATA-AAtctgaaat
gi|11 : c-AATTT------C-AA--GAA-CTCT-G-AA-GTAAGTCAGAT------TT-C-TTTGGCC-ATT--------------GCT-TATTTAA--A---T-----GAGG-TC--AGCTT----TG---ACCAAA------TT-AAAAG--TCACAAGGAGTCCAATTATACC-TT--GAT-GC--ATT-GTTTGGTTTTGGGGGGGGGGGGGTTGTTTT---G--TTT--T--GT--TTTT--GTTTCTT--T--G--TTTTTGTTCTTCGTA-TG-AAA-CATTTTCTTCC---AATTTCAAGC-AGA--TA-TTG------TAATT-TTTCC-CAATTGGTAAGGC
gi|12 : caaaaaTA-AATTCCCACTAATAC-ATGGA--AAA--AA-TAAATC-AA---AA--TGAGGTGGCAATTTGTAACTTAATCATAA-ATC----TATAG-CACAGGT-
gi|13 : tttttttagggatctgttgcagggagctccatcgacaaaaatagaggccccatttccagtaccgcactaaaattatgagtactttgaatcacgtaccaatttagttgtaaataaaTT--G--GT--TCTC--T---CTC--T--ATACTT-----GTCTATT-AA-AAA-CGTTTT-TCCC---AATTTATAGC-AAA--TA-TCG-C----TAAATATTTCC-CAAATGGAATGTCCCTGGCCCCT-GATACT-AAGAC-CT-AAAAAA
gi|14 : gtTACA-TT--AATTGTTTATT-G-------------------------TTTA---ATAATTGTT--GT--TTTT--T---CTA--T--A--ATT-----AGTT----CG-AAA-TAAATT-TCC----AATTTCAACC-AAA--TG-TCG-T------ATT-TTTCC-CAAATATGATGGCCCTGGCCCCTGGAT-TC-AAATG-GTAAAAAAATCCatctgtcatggacctcactcatcatatcgggaatggtgggaaaacgttgaccaaattat
gi|15 : TTTAA-AATTCCT---AA-A----GAA--TGT--GA-T----C-AA---AG--CAGGGTGAC---TTAT----TGATCATAA-ATC----TCATT-CACAGctgggtctatacatcgaaagcagctgacagatc
gi|16 : ataggggctgaaataaggccccactatcaatgcataaaagcaggtgttttcttcaacttttgcCCAAA------AT-CAAAA--TC----------CAAATATACA-TT--AAT-GT--ACT-G------------------------GTTCG--------------GT--TTTTA-T---CTC--T--A--CTT-----C---------------------------------CAAGC-AAA--TG-ACG-C----AAATT-TTTCC-CAATTGTAAAttaca
gi|2 : AT----TGAAAATAA-AACATGGTGCTT-CACAGGT-C---TTCTGATT-A-A-CATTT-T-T-GC-AA-CGAA-TTGT-GTAG-ATAAACTAAAA-------------------ATTCG----A---A---CAA-AATTCAA--G---T-CCA-GTGG-TA--CGTT--------------AA------TG-AAAAG--GC----------AAAG-ATA-A-TT--AAT-GT--ACT-G------------------------GTTTG---G--ATT--T-------TTT--T---CTC--T--A------------TTGTA-TG-AAA-TGTTTA-TCCC---AATTTCAAGC-AAA--TG-TTG-C----TTATT-TTTCC-CAACTGGAAAGGCCCTGGCCCCT-GATATT-AAGAC-CT-AAAAAATCC
gi|20 : gtctgtaggggggtgaaataaggccccattcccaatgctaaaaagcaggcatttttcccaatttttgctcaataattgttccga-TCCC---AGTTTAAAGC-AAA--TG-TCG-C----TAATT-TATCA-CGGTTGGAAAGGACCTGGCCCCctgtattatctcatcataagaaaactgaagatca
gi|3 : TTTTTCC-AATTT-TCCCAA-AC----------------T----C-AA---AA--CAGGGTGAT---TTAT----TGATCATAA-ACC----TCCTT-TACAGGT-CTGTCACAAATT-T-TTAATTT-T-TTGC-GA-CAAA-CTGT-G-AA-GTAAACC-GAA------TT-G-TT-------TTTG----C---ATCAGCG-CATTTAA--AAAAT-ATCTGAGG-TATAAGCTTAATTTG---ACCAAA------GT-GAAAG--TC----------CATTTATACA-TT--AAT-GC--ACT-G------------------------GTTTGTTTG--GTT--T---T--TTTT--C---CTC--TCAA--TTT-----CTTTGTA-TG-AAA-TATTTT-TCAA---AATTTCAAAC-AAA--TG-CCA-C----TAATA-TATTC-CAATTAGAAAGGCCATGGGCCCT-GCTATC-AAGAC-CT-AAACAAag
gi|4 : ggccaatataaagccccattcccaatgcaaaaagcaggtatA-ATTTCCACCCAA-A---TGAG--AAA--AA-T----TTAA---AA--T-----------TTGT----GGATCAATA-ATC----TCCTTTCACAGAC-C---CACAAATT-T-C-AATTT-T-T-GC-AAGCAAA--TGT-G-AG-GTAAACCAACC------TT-T-TT----T-GCCT-----C---A---GCT-TATTTAA--A---A-AT--GAGGATA--AA-TT----TG---ACCAAA------TTGGAAAG--TC----------CAAATTTACATTT--AAT-GA--ACT-A----------------------------------------T--GT--TCCTGGT---CTC--T--A--CTT-----TTTTGGG-GG-A----GTTTT-TCCCTCAAACT--AAGCAAAA--TG-TCG-C----TGATT-TTTCCGCAACCAG-AAGGTCTTGCCTCCT-GATATCTAAAAC-aa
gi|5 : ttagggttgttagacgggatgaaatagggccccattcccagtgctgcaaaacaggtatttcccccaattttcgcttaacTTTA-AATT--TCCCAA-ACTATGAATTAAT--A--T----C-AA---AG--CAGGTAGGC---TTGT----TGTTCATAA-ACC----TCTTA-CACAGAT---------AA-----C-AATTT-T-T-GC-AT-CAAA---------G-G-AAACCTAAT------TT-T-TTGG--C-CTCTG-------------CT-TAATTAG--A---C--T---AGG-TA--AGCTT----TG---GCCAAACGAAAGTC-GAAAAAATC----------TAATTATACC-AT--AAT-GC--AAT-G------------------------GTTTA---A--A-----------TTTT--T---CCC--T--A--CTT-----CT
gi|6 : gggtctgtaaggggccaaaataagattccattcccaatgctaaaaacagatattgttccaattttacTTTTTTA-AATTCCTCCCAA-A---TGAA--AAAT-AA-T----T-AA---AA--TAGTATGCC---TTAG----TGATCATAA-ATC----TTCTC-CACAGGC-C---CACAAATT-T-T-AATTT-A-T-GC-AG-CAAA-TTGC-G-AG-GTGAACCTGAC------TT-T-TT----CCATTTG----A---A---GAT-TATTTAA--A---T-AT--GAGG-TA--AGGTT----TG---ACCAAA------TT-GAAAG--TC----------CAAATATACA-TT--AAC-GA--ATT-G------------------------GTTTA---A--ATT--T--GT--TTTT--AA--CTC--T--A--CTT-----CTTTGTA-TG-GAA-CGTTTT-TCCG---AATTTCAAGC-AAA--TG-TCG-C----TGATT-TTTCA-CAATCGGAAAGGCCCTGGCCCCT-GATATC-AAAAC-CT-AAGAAATCCcaaacaaatgtcactatcacgaccttacagaaaccctggcatcatgtatct
gi|7 : CCAA-A--ATGAA--AAC--AA-T----T-GA---AA--TGGGGTGCC---TTAT----TGATCATAA-ACC----TCCTT-CACA-GT-C---TTCAGATT-T-C-CATTT-T-T-GC-AA-CAAC-TTGT-G------------------------------------TTG----A---A---A----ATCTAAAGA---T-AT--GA-A-TA--A------------------A------TC-AAAAG--TC----------CAATCATACA-T----GT-AC--ATTAG------------------------GTC--------ATT--TAAGTGATATTAGA---TTT--T--A--CT--------------TG-AAA-TGTTTT-TCCC---AATTTCAACC-AAAGCTG-TTATT----TAATT-TTTCC-CAATTGGAATTGCCCTGGCCCCT-GATATG-AAGGC-GT-AAACAA
gi|8 : gccactgctataaagcaggtattttacccaatgtttgctctaaaataaaaaaaCCTCCCAA-A---TGAA--AAATAAA-T----T-AACTTAAGTTAGTATGCC---TT-T----AGACCTCAACATC----TTCT----CAGGTTC---CACAAATTATGC-AATTTATGT-GCTAG-CAAAATTGCAG-AGCGTGAACCTGAA------CT-T-TT----CCATTT-----A---A---GATATATTTAA--AGGTTGAT--GAGG-TA--AGGTT-----G---ACCAAA------TT-GAA-G--TC-----------AAATATACA-TTGAAAT-TA--GGT-G------------------------GTT-A---A--ATT--T--GT--TTTT--TAA-CTC--T--A--CTTT----CTTTGTAATGCGAA-CGTTTT-TTCG---ACATTCAGCC------TGGTCG-------GATT-TTTCA-CAATCGGAAAGGCCCTGGCCCGT-GATATC-GAgaaat
gi|9 : TTTTG-AATTCC-CCAAA-AC-ATGAC--AAT--AAAT----G-AA---TA--TGAGGTGCA---TTAC----TAATCATAA-ATC----CTCAT-CACAGGT-T---CAAAAATT-T-C-AAATT-C-T-GC-AA-CAAA-TTGA-G-AA-GCAAA--TGAA------TT-A-TT-------TTTGGCCTC---A---GTT-TATCTAA--A---T-A----AAG-TA--AGCTT----CA---ACCAGA------TT-AAGAG--TC----------CATTTATACA-TT--AAT-GG--GCT-G------------------------GTTTT---G--CT-------C--TTTC--T---CTC--T--A--TTT-----CTCTGTA-agt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GGGGGGGGGGGGGTTATGGTCTTTTAAAAGCTAATGTACTGCCCCACTCCAAAGTGCTAAATAAATGTGTGTATTTCTCCCAAT
Unaligned ( gi|18 ): TAGAGAGCCAAAATAATGCCCCATTCCCAAAGCTAAAAAGCACGTATTGTCCCTAATTTTTGCTTTAAAATTCGGAA
Unaligned ( gi|19 ): AAGAGTGTGTAGAGAGCTGAAACGAGGTCCCATTTCATATACTAGAAAGCAGGTAATTTGGTCAATTATT
Unaligned ( gi|21 ): TTTTTAAGGGTCTGTGAAGGGTCCAAAATAAGATTCCATTCCAATGCTAAAAAGNAA
Unaligned ( gi|22 ): ATCATATAAGTCAAGAATGTCTGGGAAGTCGCTCAACTTGT
Alignments
lowQualScore : 222 1111111111111 11 555555555555555555555555555555555 3333333333 111111111 1111111111 5555555555555555555555555555555555555555555555555 111111 111111
lowQualScore : 5 6 0 3 000 666 4444444444444 666 8888 1 666 7777 3 7777 33 77777 4 999 888 3 3 3 66 00 3 77 1 777 888888888888888888888888888888888 444 1111111111 3 55 4 444444444 999999 3 44 4444444444 0 3 44 3 555 0 3 6666666666666666666666666666666666666666666666666 555 444444 33 33 444 000000 0 66 3 44 3 6666 3 44 3 999999 3 3 4 4 5 5
lowQualScore : . . . . ... ... ............. ... .... . ... .... . .... .. ..... . ... ... . . . .. .. . .. . ... ................................. ... .......... . .. . ......... ...... . .. .......... . . .. . ... . . ................................................. ... ...... .. .. ... ...... . .. . .. . .... . .. . ...... . . . . . .
lowQualScore : 0 4 5 6 555 111 5555555555555 444 5555 4 444 1111 3 1111 88 22222 0 999 666 6 6 6 33 00 6 66 9 444 999999999999999999999999999999999 000 1111111111 6 00 3 222222222 666666 3 66 6666666666 4 1 22 1 666 7 1 1111111111111111111111111111111111111111111111111 000 222222 99 99 555 111111 2 55 3 22 1 9999 1 22 1 888888 1 1 0 0 0 7
consensus : TTTTTTA-AATTCCTCCCAA-AC-ATGAA--AAN--AA-T----C-AA---AA--CGGGGTGCC---TTAT----TGATCATAA-ATC----TCCTT-CACAGGT-C---CACAAATT-T-C-AATTT-T-T-GC-AA-CAAA-TTGC-G-AG-GTAAACCTGAN------TT-T-TTC-GTTTG----C---A---GCT-TATTTAAA---T-AT--GAGG-TA--AGCTT----TG---ACCAAA------TT-GAAAG--TC----------CAATTATACA-TT--AAT-GC--ACT-G------------------------GTTTG---G--ATT--T--GT----TT---TT---T--CTC--T--A--CTT-----CTTTGTA-TG-AAA-CGTTTT-TCCC---AATTTCAAGC-AAA--TG-TCG-C----TAATT-TTTCC-CAATTGGAAAGGCCCTGGCCCCT-GATATC-AAGAC-CT-AAAAAATCC
Reference ( family-16 ) : TTTTTTA-AATTCCTCCCAA-AC-ATGAA--AAN--AA-T----C-AA---AA--CGGGGTGCC---TTAT----TGATCATAA-ATC----TCCTT-CACAGGT-C---CACAAATT-T-C-AATTT-T-T-GC-AA-CAAA-TTGC-G-AG-GTAAACCTGAN------TT-T-TTC-GTTTG----C---A---GCT-TATTTAAA---T-AT--GAGG-TA--AGCTT----TG---ACCAAA------TT-GAAAG--TC----------CAATTATACA-TT--AAT-GC--ACT-G------------------------GTTTG---G--ATT--T--GT----TT---TT---T--CTC--T--A--CTT-----CTTTGTA-TG-AAA-CGTTTT-TCCC---AATTTCAAGC-AAA--TG-TCG-C----TAATT-TTTCC-CAATTGGAAAGGCCCTGGCCCCT-GATATC-AAGAC-CT-AAAAAATCC
gi|1 : TTTTAGAATTCC--CAAA-AC-ATGAC--AAT--AAAT----C-AA---AA--TGGGGTGCC---TTAA----TAGCGACAA--TC----TCTTT-CACAGGT-C---CATGAATT-T-T-AATTT-T-T-AC-AG-CAAA-TTGA-G-AA-GCAAA--TGAAAAAAAATTAT-TTG-GCTT-----C---A---GCT-TATATAAA---T-A----AGG-TA--AGCTT----TATTAATCAAA------TT-GAAAG--TC----------CAGTTGTACA-TC--AAT-GC--ACT-G------------------------GTTTG---GT-ACT--T--------TC---TT---G--CTC--T------CT-----CTCTGTA-TT-AAA-CTTTTT-TCCC---AATTTCAAAC-AAA--TG-TCG-C----TAGTT-TTTC-----TT----------TGGCCCCA-GATATT-AAGACTTT-AAAAAATC
gi|10 : ttaggggccgaaataaggccccattaccattgctataaagcagataattttttcttaatttttgCCAAA-AC-ATGAC--AAT--AAAT----C-AA---AA--TGGGTTACA---TTAC----TAATTATAA-ATA----TCCTT-CTCAGGT-C---CATAAATT-T-----------T-GC-AA-CAAA-TTGA-G-ATTGCAAA--TGAT------AT-TATT---TTTG----CCTCA---GCT-TATT--AG---T-A----AGA-TA--AGTTT----TA---ACCAAA------TT-GAAAG--TC----------CAATTATACA-TT--AAT-GC--AAT-G------------------------GTTTG--------------GT----TC---TC---T--CTCTAT--A--CTT-----ATCTAT--TA-AAATTGTTTT-TCCC---AATTTCAAGC-AGA--TG-TGG-CTACTTAATT-CTTCC-CAACTGGAAAGGCCCTGGCCCCT-GATATA-AAtctgaaat
gi|11 : c-AATTT------C-AA--GAA-CTCT-G-AA-GTAAGTCAGAT------TT-C-TTT-GGCCA----T---T---GCT-TATTTAAA---T-----GAGG-TC--AGCTT----TG---ACCAAA------TT-AAAAG--TCACAAGGAGTCCAATTATACC-TT--GAT-GC--ATT-GTTTGGTTTTGGGGGGGGGGGGGTTGTTTT---G--TTT--T--GT----TT---TTGTTT--CTT--T--G--TTTTTGTTCTTCGTA-TG-AAA-CATTTTCTTCC---AATTTCAAGC-AGA--TA-TTG------TAATT-TTTCC-CAATTGGTAAGGC
gi|12 : caaaaaTA-AATTCCCACTAATAC-ATGGA--AAA--AA-TAAATC-AA---AA--TGAGGTGGCAATTTGTAACTTAATCATAA-ATC----TATAG-CACAGGT-
gi|13 : tttttttagggatctgttgcagggagctccatcgacaaaaatagaggccccatttccagtaccgcactaaaattatgagtactttgaatcacgtaccaatttagttgtaaataaaTT--G--GT----TC---TC---T--CTC--T--ATACTT-----GTCTATT-AA-AAA-CGTTTT-TCCC---AATTTATAGC-AAA--TA-TCG-C----TAAATATTTCC-CAAATGGAATGTCCCTGGCCCCT-GATACT-AAGAC-CT-AAAAAA
gi|14 : gtTACA-TT--AATTGTTTATT-G-------------------------TTTA---ATAATTGTT--GT----TT---TT---T--CTA--T--A--ATT-----AGTT----CG-AAA-TAAATT-TCC----AATTTCAACC-AAA--TG-TCG-T------ATT-TTTCC-CAAATATGATGGCCCTGGCCCCTGGAT-TC-AAATG-GTAAAAAAATCCatctgtcatggacctcactcatcatatcgggaatggtgggaaaacgttgaccaaattat
gi|15 : TTTAA-AATTCCT---AA-A----GAA--TGT--GA-T----C-AA---AG--CAGGGTGAC---TTAT----TGATCATAA-ATC----TCATT-CACAGctgggtctatacatcgaaagcagctgacagatc
gi|16 : ataggggctgaaataaggccccactatcaatgcataaaagcaggtgttttcttcaacttttgcCCAAA------AT-CAAAA--TC----------CAAATATACA-TT--AAT-GT--ACT-G------------------------GTTCG--------------GT----TT---TTA--T--CTC--T--A--CTT-----C---------------------------------CAAGC-AAA--TG-ACG-C----AAATT-TTTCC-CAATTGTAAAttaca
gi|2 : AT----TGAAAATAA-AACATGGTGCTT-CACAGGT-C---TTCTGATT-A-A-CATTT-T-T-GC-AA-CGAA-TTGT-GTAG-ATAAACTAAAA------AT-T---C-GA--A----C---A---AA---ATTCAAG---T-CCA-GTGG-TA--CGTT--------------AA------TG-AAAAG--GC----------AAAG-ATA-A-TT--AAT-GT--ACT-G------------------------GTTTG---G--ATT--T---------T---TT---T--CTC--T--A------------TTGTA-TG-AAA-TGTTTA-TCCC---AATTTCAAGC-AAA--TG-TTG-C----TTATT-TTTCC-CAACTGGAAAGGCCCTGGCCCCT-GATATT-AAGAC-CT-AAAAAATCC
gi|20 : gtctgtaggggggtgaaataaggccccattcccaatgctaaaaagcaggcatttttcccaatttttgctcaataattgttccga-TCCC---AGTTTAAAGC-AAA--TG-TCG-C----TAATT-TATCA-CGGTTGGAAAGGACCTGGCCCCctgtattatctcatcataagaaaactgaagatca
gi|3 : TTTTTCC-AATTT-TCCCAA-AC----------------T----C-AA---AA--CAGGGTGAT---TTAT----TGATCATAA-ACC----TCCTT-TACAGGT-CTGTCACAAATT-T-TTAATTT-T-TTGC-GA-CAAA-CTGT-G-AA-GTAAACC-GAA------TT-G-TT---TTTG----C---ATCAGCG-CATTTAAAAAAT-ATCTGAGG-TATAAGCTTAATTTG---ACCAAA------GT-GAAAG--TC----------CATTTATACA-TT--AAT-GC--ACT-G------------------------GTTTGTTTG--GTT--T---T----TT---TT---C--CTC--TCAA--TTT-----CTTTGTA-TG-AAA-TATTTT-TCAA---AATTTCAAAC-AAA--TG-CCA-C----TAATA-TATTC-CAATTAGAAAGGCCATGGGCCCT-GCTATC-AAGAC-CT-AAACAAag
gi|4 : ggccaatataaagccccattcccaatgcaaaaagcaggtatA-ATTTCCACCCAA-A---TGAG--AAA--AA-T----TTAA---AA--T-----------TTGT----GGATCAATA-ATC----TCCTTTCACAGAC-C---CACAAATT-T-C-AATTT-T-T-GC-AAGCAAA--TGT-G-AG-GTAAACCAACC------TT-T-TTT-GCCT-----C---A---GCT-TATTTAAA---A-AT--GAGGATA--AA-TT----TG---ACCAAA------TTGGAAAG--TC----------CAAATTTACATTT--AAT-GA--ACT-A----------------------------------------T--GT----TC---CTGG-T--CTC--T--A--CTT-----TTTTGGG-GG-A----GTTTT-TCCCTCAAACT--AAGCAAAA--TG-TCG-C----TGATT-TTTCCGCAACCAG-AAGGTCTTGCCTCCT-GATATCTAAAAC-aa
gi|5 : ttagggttgttagacgggatgaaatagggccccattcccagtgctgcaaaacaggtatttcccccaattttcgcttaacTTTA-AATT--TCCCAA-ACTATGAATTAAT--A--T----C-AA---AG--CAGGTAGGC---TTGT----TGTTCATAA-ACC----TCTTA-CACAGAT---------AA-----C-AATTT-T-T-GC-AT-CAAA---------G-G-AAACCTAAT------TT-T-TTG-GCCT-----C---T---GCT-TAATTAGA---C--T---AGG-TA--AGCTT----TG---GCCAAACGAAAGTC-GAAAAAATC----------TAATTATACC-AT--AAT-GC--AAT-G------------------------GTTTA---A--A-------------TT---TT---T--CCC--T--A--CTT-----CT
gi|6 : gggtctgtaaggggccaaaataagattccattcccaatgctaaaaacagatattgttccaattttacTTTTTTA-AATTCCTCCCAA-A---TGAA--AAAT-AA-T----T-AA---AA--TAGTATGCC---TTAG----TGATCATAA-ATC----TTCTC-CACAGGC-C---CACAAATT-T-T-AATTT-A-T-GC-AG-CAAA-TTGC-G-AG-GTGAACCTGAC------TT-T-TTCCATTTG----A---A---GAT-TATTTAAA---T-AT--GAGG-TA--AGGTT----TG---ACCAAA------TT-GAAAG--TC----------CAAATATACA-TT--AAC-GA--ATT-G------------------------GTTTA---A--ATT--T--GT----TT---TT---AA-CTC--T--A--CTT-----CTTTGTA-TG-GAA-CGTTTT-TCCG---AATTTCAAGC-AAA--TG-TCG-C----TGATT-TTTCA-CAATCGGAAAGGCCCTGGCCCCT-GATATC-AAAAC-CT-AAGAAATCCcaaacaaatgtcactatcacgaccttacagaaaccctggcatcatgtatct
gi|7 : CCAA-A--ATGAA--AAC--AA-T----T-GA---AA--TGGGGTGCC---TTAT----TGATCATAA-ACC----TCCTT-CACA-GT-C---TTCAGATT-T-C-CATTT-T-T-GC-AA-CAAC-TTGT-G-TT-GAAAATCTAA------------------------------------------AGA---T-AT--GA-A-TA--A-------------ATCA------------AAAG--TC----------CAATCATACA-T----GT-AC--ATTAG------------------------GTC--------ATT--TAAGTGATATTAGATT---T-------T--A--CT--------------TG-AAA-TGTTTT-TCCC---AATTTCAACC-AAAGCTG-TTATT----TAATT-TTTCC-CAATTGGAATTGCCCTGGCCCCT-GATATG-AAGGC-GT-AAACAA
gi|8 : gccactgctataaagcaggtattttacccaatgtttgctctaaaataaaaaaaCCTCCCAA-A---TGAA--AAATAAA-T----T-AACTTAAGTTAGTATGCC---TT-T----AGACCTCAACATC----TTCT----CAGGTTC---CACAAATTATGC-AATTTATGT-GCTAG-CAAAATTGCAG-AGCGTGAACCTGAA------CT-T-TTCCATTTA--------A---GATATATTTAAAGGTTGAT--GAGG-TA--AGGTT-----G---ACCAAA------TT-GAA-G--TC----------AAAT-ATACA-TTGAAAT-TA--GGT-G------------------------GTT-A---A--ATT--T--GT----TT---TT---TAACTC--T--A--CTTT----CTTTGTAATGCGAA-CGTTTT-TTCG---ACATTCAGCC------TGGTCG-------GATT-TTTCA-CAATCGGAAAGGCCCTGGCCCGT-GATATC-GAgaaat
gi|9 : TTTTG-AATTCC-CCAAA-AC-ATGAC--AAT--AAAT----G-AA---TA--TGAGGTGCA---TTAC----TAATCATAA-ATC----CTCAT-CACAGGT-T---CAAAAATT-T-C-AAATT-C-T-GC-AA-CAAA-TTGA-G-AA-GCAAA--TGAA------TT-A-TT---TTTGGCCTC---A---GTT-TATCTAAA---T-A----AAG-TA--AGCTT----CA---ACCAGA------TT-AAGAG--TC----------CATTTATACA-TT--AAT-GG--GCT-G------------------------GTTTT---G--CT-------C----TT---TC---T--CTC--T--A--TTT-----CTCTGTA-agt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GGGGGGGGGGGGGTTATGGTCTTTTAAAAGCTAATGTACTGCCCCACTCCAAAGTGCTAAATAAATGTGTGTATTTCTCCCAAT
Unaligned ( gi|18 ): TAGAGAGCCAAAATAATGCCCCATTCCCAAAGCTAAAAAGCACGTATTGTCCCTAATTTTTGCTTTAAAATTCGGAA
Unaligned ( gi|19 ): AAGAGTGTGTAGAGAGCTGAAACGAGGTCCCATTTCATATACTAGAAAGCAGGTAATTTGGTCAATTATT
Unaligned ( gi|21 ): TTTTTAAGGGTCTGTGAAGGGTCCAAAATAAGATTCCATTCCAATGCTAAAAAGNAA
Unaligned ( gi|22 ): ATCATATAAGTCAAGAATGTCTGGGAAGTCGCTCAACTTGT
Alignments
lowQualScore : 222 1111111111111 11 555555555555555555555555555555555 3333333333 111111111 1111111111 5555555555555555555555555555555555555555555555555 111111 111111
lowQualScore : 5 6 0 3 000 666 4444444444444 666 8888 1 666 7777 3 7777 33 77777 4 999 888 3 3 3 66 00 3 77 1 777 888888888888888888888888888888888 444 1111111111 3 55 4 444444444 999999 3 44 4444444444 0 3 44 3 555 0 3 6666666666666666666666666666666666666666666666666 555 444444 33 33 444 000000 0 66 3 44 3 6666 3 44 3 999999 3 3 4 4 5 5
lowQualScore : . . . . ... ... ............. ... .... . ... .... . .... .. ..... . ... ... . . . .. .. . .. . ... ................................. ... .......... . .. . ......... ...... . .. .......... . . .. . ... . . ................................................. ... ...... .. .. ... ...... . .. . .. . .... . .. . ...... . . . . . .
lowQualScore : 0 4 5 6 555 111 5555555555555 444 5555 4 444 1111 3 1111 88 22222 0 999 666 6 6 6 33 00 6 66 9 444 999999999999999999999999999999999 000 1111111111 6 00 3 222222222 666666 3 66 6666666666 4 1 22 1 666 7 1 1111111111111111111111111111111111111111111111111 000 222222 99 99 555 111111 2 55 3 22 1 9999 1 22 1 888888 1 1 0 0 0 7
consensus : TTTTTTA-AATTCCTCCCAA-AC-ATGAA--AAN--AA-T----C-AA---AA--CGGGGTGCC---TTAT----TGATCATAA-ATC----TCCTT-CACAGGT-C---CACAAATT-T-C-AATTT-T-T-GC-AA-CAAA-TTGC-G-AG-GTAAACCTGAN------TT-T-TTC-GTTTG----C---A---GCT-TATTTAAA---T-AT--GAGG-TA--AGCTT----TG---ACCAAA------TT-GAAAG--TC----------CAATTATACA-TT--AAT-GC--ACT-G------------------------GTTTG---G--ATT--T--GT----TT---TT---T--CTC--T--A--CTT-----CTTTGTA-TG-AAA-CGTTTT-TCCC---AATTTCAAGC-AAA--TG-TCG-C----TAATT-TTTCC-CAATTGGAAAGGCCCTGGCCCCT-GATATC-AAGAC-CT-AAAAAATCC
Reference ( family-16 ) : TTTTTTA-AATTCCTCCCAA-AC-ATGAA--AAN--AA-T----C-AA---AA--CGGGGTGCC---TTAT----TGATCATAA-ATC----TCCTT-CACAGGT-C---CACAAATT-T-C-AATTT-T-T-GC-AA-CAAA-TTGC-G-AG-GTAAACCTGAN------TT-T-TTC-GTTTG----C---A---GCT-TATTTAAA---T-AT--GAGG-TA--AGCTT----TG---ACCAAA------TT-GAAAG--TC----------CAATTATACA-TT--AAT-GC--ACT-G------------------------GTTTG---G--ATT--T--GT----TT---TT---T--CTC--T--A--CTT-----CTTTGTA-TG-AAA-CGTTTT-TCCC---AATTTCAAGC-AAA--TG-TCG-C----TAATT-TTTCC-CAATTGGAAAGGCCCTGGCCCCT-GATATC-AAGAC-CT-AAAAAATCC
gi|1 : TTTTAGAATTCC--CAAA-AC-ATGAC--AAT--AAAT----C-AA---AA--TGGGGTGCC---TTAA----TAGCGACAA--TC----TCTTT-CACAGGT-C---CATGAATT-T-T-AATTT-T-T-AC-AG-CAAA-TTGA-G-AA-GCAAA--TGAAAAAAAATTAT-TTG-GCTT-----C---A---GCT-TATATAAA---T-A----AGG-TA--AGCTT----TATTAATCAAA------TT-GAAAG--TC----------CAGTTGTACA-TC--AAT-GC--ACT-G------------------------GTTTG---GT-ACT--T--------TC---TT---G--CTC--T------CT-----CTCTGTA-TT-AAA-CTTTTT-TCCC---AATTTCAAAC-AAA--TG-TCG-C----TAGTT-TTTC-----TT----------TGGCCCCA-GATATT-AAGACTTT-AAAAAATC
gi|10 : ttaggggccgaaataaggccccattaccattgctataaagcagataattttttcttaatttttgCCAAA-AC-ATGAC--AAT--AAAT----C-AA---AA--TGGGTTACA---TTAC----TAATTATAA-ATA----TCCTT-CTCAGGT-C---CATAAATT-T-----------T-GC-AA-CAAA-TTGA-G-ATTGCAAA--TGAT------AT-TATT---TTTG----CCTCA---GCT-TATT--AG---T-A----AGA-TA--AGTTT----TA---ACCAAA------TT-GAAAG--TC----------CAATTATACA-TT--AAT-GC--AAT-G------------------------GTTTG--------------GT----TC---TC---T--CTCTAT--A--CTT-----ATCTAT--TA-AAATTGTTTT-TCCC---AATTTCAAGC-AGA--TG-TGG-CTACTTAATT-CTTCC-CAACTGGAAAGGCCCTGGCCCCT-GATATA-AAtctgaaat
gi|11 : c-AATTT------C-AA--GAA-CTCT-G-AA-GTAAGTCAGAT------TT-C-TTT-GGCCA----T---T---GCT-TATTTAAA---T-----GAGG-TC--AGCTT----TG---ACCAAA------TT-AAAAG--TCACAAGGAGTCCAATTATACC-TT--GAT-GC--ATT-GTTTGGTTTTGGGGGGGGGGGGGTTGTTTT---G--TTT--T--GT----TT---TTGTTT--CTT--T--G--TTTTTGTTCTTCGTA-TG-AAA-CATTTTCTTCC---AATTTCAAGC-AGA--TA-TTG------TAATT-TTTCC-CAATTGGTAAGGC
gi|12 : caaaaaTA-AATTCCCACTAATAC-ATGGA--AAA--AA-TAAATC-AA---AA--TGAGGTGGCAATTTGTAACTTAATCATAA-ATC----TATAG-CACAGGT-
gi|13 : tttttttagggatctgttgcagggagctccatcgacaaaaatagaggccccatttccagtaccgcactaaaattatgagtactttgaatcacgtaccaatttagttgtaaataaaTT--G--GT----TC---TC---T--CTC--T--ATACTT-----GTCTATT-AA-AAA-CGTTTT-TCCC---AATTTATAGC-AAA--TA-TCG-C----TAAATATTTCC-CAAATGGAATGTCCCTGGCCCCT-GATACT-AAGAC-CT-AAAAAA
gi|14 : gtTACA-TT--AATTGTTTATT-G-------------------------TTTA---ATAATTGTT--GT----TT---TT---T--CTA--T--A--ATT-----AGTT----CG-AAA-TAAATT-TCC----AATTTCAACC-AAA--TG-TCG-T------ATT-TTTCC-CAAATATGATGGCCCTGGCCCCTGGAT-TC-AAATG-GTAAAAAAATCCatctgtcatggacctcactcatcatatcgggaatggtgggaaaacgttgaccaaattat
gi|15 : TTTAA-AATTCCT---AA-A----GAA--TGT--GA-T----C-AA---AG--CAGGGTGAC---TTAT----TGATCATAA-ATC----TCATT-CACAGctgggtctatacatcgaaagcagctgacagatc
gi|16 : ataggggctgaaataaggccccactatcaatgcataaaagcaggtgttttcttcaacttttgcCCAAA------AT-CAAAA--TC----------CAAATATACA-TT--AAT-GT--ACT-G------------------------GTTCG--------------GT----TT---TTA--T--CTC--T--A--CTT-----C---------------------------------CAAGC-AAA--TG-ACG-C----AAATT-TTTCC-CAATTGTAAAttaca
gi|2 : AT----TGAAAATAA-AACATGGTGCTT-CACAGGT-C---TTCTGATT-A-A-CATTT-T-T-GC-AA-CGAA-TTGT-GTAG-ATAAACTAAAA------AT-T---C-GA--A----C---A---AA---ATTCAAG---T-CCA-GTGG-TA--CGTT--------------AA------TG-AAAAG--GC----------AAAG-ATA-A-TT--AAT-GT--ACT-G------------------------GTTTG---G--ATT--T---------T---TT---T--CTC--T--A------------TTGTA-TG-AAA-TGTTTA-TCCC---AATTTCAAGC-AAA--TG-TTG-C----TTATT-TTTCC-CAACTGGAAAGGCCCTGGCCCCT-GATATT-AAGAC-CT-AAAAAATCC
gi|20 : gtctgtaggggggtgaaataaggccccattcccaatgctaaaaagcaggcatttttcccaatttttgctcaataattgttccga-TCCC---AGTTTAAAGC-AAA--TG-TCG-C----TAATT-TATCA-CGGTTGGAAAGGACCTGGCCCCctgtattatctcatcataagaaaactgaagatca
gi|3 : TTTTTCC-AATTT-TCCCAA-AC----------------T----C-AA---AA--CAGGGTGAT---TTAT----TGATCATAA-ACC----TCCTT-TACAGGT-CTGTCACAAATT-T-TTAATTT-T-TTGC-GA-CAAA-CTGT-G-AA-GTAAACC-GAA------TT-G-TT---TTTG----C---ATCAGCG-CATTTAAAAAAT-ATCTGAGG-TATAAGCTTAATTTG---ACCAAA------GT-GAAAG--TC----------CATTTATACA-TT--AAT-GC--ACT-G------------------------GTTTGTTTG--GTT--T---T----TT---TT---C--CTC--TCAA--TTT-----CTTTGTA-TG-AAA-TATTTT-TCAA---AATTTCAAAC-AAA--TG-CCA-C----TAATA-TATTC-CAATTAGAAAGGCCATGGGCCCT-GCTATC-AAGAC-CT-AAACAAag
gi|4 : ggccaatataaagccccattcccaatgcaaaaagcaggtatA-ATTTCCACCCAA-A---TGAG--AAA--AA-T----TTAA---AA--T-----------TTGT----GGATCAATA-ATC----TCCTTTCACAGAC-C---CACAAATT-T-C-AATTT-T-T-GC-AAGCAAA--TGT-G-AG-GTAAACCAACC------TT-T-TTT-GCCT-----C---A---GCT-TATTTAAA---A-AT--GAGGATA--AA-TT----TG---ACCAAA------TTGGAAAG--TC----------CAAATTTACATTT--AAT-GA--ACT-A----------------------------------------T--GT----TC---CTGG-T--CTC--T--A--CTT-----TTTTGGG-GG-A----GTTTT-TCCCTCAAACT--AAGCAAAA--TG-TCG-C----TGATT-TTTCCGCAACCAG-AAGGTCTTGCCTCCT-GATATCTAAAAC-aa
gi|5 : ttagggttgttagacgggatgaaatagggccccattcccagtgctgcaaaacaggtatttcccccaattttcgcttaacTTTA-AATT--TCCCAA-ACTATGAATTAAT--A--T----C-AA---AG--CAGGTAGGC---TTGT----TGTTCATAA-ACC----TCTTA-CACAGAT---------AA-----C-AATTT-T-T-GC-AT-CAAA---------G-G-AAACCTAAT------TT-T-TTG-GCCT-----C---T---GCT-TAATTAGA---C--T---AGG-TA--AGCTT----TG---GCCAAACGAAAGTC-GAAAAAATC----------TAATTATACC-AT--AAT-GC--AAT-G------------------------GTTTA---A--A-------------TT---TT---T--CCC--T--A--CTT-----CT
gi|6 : gggtctgtaaggggccaaaataagattccattcccaatgctaaaaacagatattgttccaattttacTTTTTTA-AATTCCTCCCAA-A---TGAA--AAAT-AA-T----T-AA---AA--TAGTATGCC---TTAG----TGATCATAA-ATC----TTCTC-CACAGGC-C---CACAAATT-T-T-AATTT-A-T-GC-AG-CAAA-TTGC-G-AG-GTGAACCTGAC------TT-T-TTCCATTTG----A---A---GAT-TATTTAAA---T-AT--GAGG-TA--AGGTT----TG---ACCAAA------TT-GAAAG--TC----------CAAATATACA-TT--AAC-GA--ATT-G------------------------GTTTA---A--ATT--T--GT----TT---TT---AA-CTC--T--A--CTT-----CTTTGTA-TG-GAA-CGTTTT-TCCG---AATTTCAAGC-AAA--TG-TCG-C----TGATT-TTTCA-CAATCGGAAAGGCCCTGGCCCCT-GATATC-AAAAC-CT-AAGAAATCCcaaacaaatgtcactatcacgaccttacagaaaccctggcatcatgtatct
gi|7 : CCAA-A--ATGAA--AAC--AA-T----T-GA---AA--TGGGGTGCC---TTAT----TGATCATAA-ACC----TCCTT-CACA-GT-C---TTCAGATT-T-C-CATTT-T-T-GC-AA-CAAC-TTGT-G-TT-GAAAATCTAA------------------------------------------AGA---T-AT--GA-A-TA--A-------------ATCA------------AAAG--TC----------CAATCATACA-T----GT-AC--ATTAG------------------------GTC--------ATT--TAAGTGATATTAGATT---T-------T--A--CT--------------TG-AAA-TGTTTT-TCCC---AATTTCAACC-AAAGCTG-TTATT----TAATT-TTTCC-CAATTGGAATTGCCCTGGCCCCT-GATATG-AAGGC-GT-AAACAA
gi|8 : gccactgctataaagcaggtattttacccaatgtttgctctaaaataaaaaaaCCTCCCAA-A---TGAA--AAATAAA-T----T-AACTTAAGTTAGTATGCC---TT-T----AGACCTCAACATC----TTCT----CAGGTTC---CACAAATTATGC-AATTTATGT-GCTAG-CAAAATTGCAG-AGCGTGAACCTGAA------CT-T-TTCCATTTA--------A---GATATATTTAAAGGTTGAT--GAGG-TA--AGGTT-----G---ACCAAA------TT-GAA-G--TC----------AAAT-ATACA-TTGAAAT-TA--GGT-G------------------------GTT-A---A--ATT--T--GT----TT---TT---TAACTC--T--A--CTTT----CTTTGTAATGCGAA-CGTTTT-TTCG---ACATTCAGCC------TGGTCG-------GATT-TTTCA-CAATCGGAAAGGCCCTGGCCCGT-GATATC-GAgaaat
gi|9 : TTTTG-AATTCC-CCAAA-AC-ATGAC--AAT--AAAT----G-AA---TA--TGAGGTGCA---TTAC----TAATCATAA-ATC----CTCAT-CACAGGT-T---CAAAAATT-T-C-AAATT-C-T-GC-AA-CAAA-TTGA-G-AA-GCAAA--TGAA------TT-A-TT---TTTGGCCTC---A---GTT-TATCTAAA---T-A----AAG-TA--AGCTT----CA---ACCAGA------TT-AAGAG--TC----------CATTTATACA-TT--AAT-GG--GCT-G------------------------GTTTT---G--CT-------C----TT---TC---T--CTC--T--A--TTT-----CTCTGTA-agt
blockSeqs : . C T CTA ATT AAATAAATC CTT GTTA C AAT AACT C ATGG TT CTGT A TT ATG T T G AT CA T TT C TCA TATTATTTTTGCCTCA ATA AAATATCTG A TA T AATTTG CGAAAG G AA ACAAGGAGTC T GA T TTT A TTTGGTTTTGGGGGGGGGGGGGTTGTTTTGTTTTGT AGA GTTT TA CA TAC TTGTTC AA C TT C CTCA A GC G CTACT A G G T . A
blockSeqs : . T . CA C ATAAATT . TG G . . . . T TC . GC T . . . T A . GC T CTA ATTATTTTTGGCCTCA CT GGTTGATG . . C TA . . . . . . . C . TTTAATAATTGTTGT . GGT . . C TC A . C . C . . . TT . . . . . .
blockSeqs : . T . CA A TAAATC . TG A . . . . G C . A T . . . C T . A T CCA ATTGTTTTTGCATCA CT TCCAG . . T TG . . . . . . . C . GTCATTTAAGTGATA . TAA . . T A T . C . C . . . C . . . . . .
blockSeqs : . A . CA A AAATTT . CA A . . . . T C . C T . . . T T . G T CCT CTTTTTCCATTTGAA CG AATG . . C TG . . . . . . . T . GTTTGTTTGGTTTT . AT . . A G A . T . C . . . T . . . . . .
blockSeqs : . T . C G ATAATT . CA G . . . . T C . C T . . . C T . A T CCT TTTCTTTGGCCATT CT TATG . . C TG . . . . . . . T . GTTTAAATTTGT . AA . . C A A . T . C . . . C . . . . . .
blockSeqs : . T . A A TAAATG . CA C . . . . T C . T A . . . T T . G T TCT ACTTTTCCATTTAA CT TATG . . G TG . . . . . . . C . GTTAAATTTGT . T . . T C G . T . C . . . C . . . . . .
blockSeqs : . T . . A TGATC . TA C . . . . A C . C T . . . T C . G A CCT CTTTTTTGCCTCA AT TA . . G CA . . . . . . . A . GTTTGGATTT . T . . C C A . C . A . . . C . . . . .
blockSeqs : . . . A CAATT . TG C . . . . C T . C C . . . T T . G T CC TTTTTTGGCCTCT TT TG . . C G . . . . . . . C . GTTTTGCTC . T . . C T A . T . G . . . C . . . .
blockSeqs : . . C TATC . TG C . . . . T . . . . . . . . A . T C T AATTCGAACA A CT . . . . . . . . . . . A . GTTTGGT . T . . C C . . C . C . . . C . . . .
blockSeqs : . . . TC . T . . . . . T . . . . . . . A . T . . TA . . . . . . . . . . . C . GTTCGGT . C . . C C . . . . G . . . C . .
blockSeqs : . . . . . . . . . . . A . GTTTAAA . T . . C C . . . . . . . . . . .
blockSeqs : . . . G . TGT . T . . T . . . . . . . . . .
blockSeqs : . T . . . .
blockSeqCons : CA* CCN ATTTTTTTGACCTCA****************** TG******* GTTTGATTTGT************************************** C**
originalCons : TTTTTTA-AATTCCTCCCAA-AC-ATGAA--AAN--AA-T----C-AA---AA--CGGGGTGCC---TTAT----TGATCATAA-ATC----TCCTT-CACAGGT-C---CACAAATT-T-C-AATTT-T-T-GC-AA-CAAA-TTGC-G-AG-GTAAACCTGAN------TT-T-TTC-GTTTG----C---A---GCT-TATTTAAA---T-AT--GAGG-TA--AGCTT----TG---ACCAAA------TT-GAAAG--TC----------CAATTATACA-TT--AAT-GC--ACT-G------------------------GTTTG---G--ATT--T--GT----TT---TT---T--CTC--T--A--CTT-----CTTTGTA-TG-AAA-CGTTTT-TCCC---AATTTCAAGC-AAA--TG-TCG-C----TAATT-TTTCC-CAATTGGAAAGGCCCTGGCCCCT-GATATC-AAGAC-CT-AAAAAATCC
finalCons : TTTTTTA-AATTCCTCCCAA-ACA-TGAA--AAN--AA-T----C-AA---AA--CGGGGTGCC---TTAT----TGATCATAA-ATC----TCCTT-CACAGGT-C---CACAAATT-T-C-AATTT-T-T-GC-AA-CAAA-TTGC-G-AG-GTAAACCNGAATTTTTTTGACCTCA------------------GCT-TATTTAAA---T-AT--GAGG-TA--AGCTTTG-------ACCAAA------TT-GAAAG--TC----------CAATTATACA-TT--AAT-GC--ACT-GGTTTGATTTGT--------------------------------------TT---TT---T--CTC--T--AC--TT-----CTTTGTA-TG-AAA-CGTTTT-TCCC---AATTTCAAGC-AAA--TG-TCG-C----TAATT-TTTCC-CAATTGGAAAGGCCCTGGCCCCT-GATATC-AAGAC-CT-AAAAAATCC
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GGGGGGGGGGGGGTTATGGTCTTTTAAAAGCTAATGTACTGCCCCACTCCAAAGTGCTAAATAAATGTGTGTATTTCTCCCAAT
Unaligned ( gi|18 ): TAGAGAGCCAAAATAATGCCCCATTCCCAAAGCTAAAAAGCACGTATTGTCCCTAATTTTTGCTTTAAAATTCGGAA
Unaligned ( gi|19 ): AAGAGTGTGTAGAGAGCTGAAACGAGGTCCCATTTCATATACTAGAAAGCAGGTAATTTGGTCAATTATT
Unaligned ( gi|21 ): TTTTTAAGGGTCTGTGAAGGGTCCAAAATAAGATTCCATTCCAATGCTAAAAAGNAA
Unaligned ( gi|22 ): ATCATATAAGTCAAGAATGTCTGGGAAGTCGCTCAACTTGT
Alignments
lowQualScore : 222 1111111111111 1111111 2222222222222 11111 3333333333 111111111 1111111111 3333333333333333333333333333333333333333333333333 2222222 111111
lowQualScore : 5 6 0 3 000 666 4444444444444 666 8888 1 666 7777 3 7777 33 77777 4 999 888 3 3 3 66 1111111 1 8888888888888 7777 33333 444 55 1111111111 3 55 4 444444444 999999 3 44 4444444444 0 3 44 3 555 0 8888888888888888888888888888888888888888888888888 555 1111111 33 0 000000 0 66 3 44 3 6666 3 44 3 999999 3 3 4 4 5 5
lowQualScore : . . . . ... ... ............. ... .... . ... .... . .... .. ..... . ... ... . . . .. ....... . ............. .... ..... ... .. .......... . .. . ......... ...... . .. .......... . . .. . ... . ................................................. ... ....... .. . ...... . .. . .. . .... . .. . ...... . . . . . .
lowQualScore : 0 4 5 6 555 111 5555555555555 444 5555 4 444 1111 3 1111 88 22222 0 999 666 6 6 6 33 2222222 7 4444444444444 7777 00000 000 00 1111111111 6 00 3 222222222 666666 3 66 6666666666 4 1 22 1 666 7 7777777777777777777777777777777777777777777777777 000 6666666 99 6 111111 2 55 3 22 1 9999 1 22 1 888888 1 1 0 0 0 7
consensus : TTTTTTA-AATTCCTCCCAA-AC-ATGAA--AAN--AA-T----C-AA---AA--CGGGGTGCC---TTAT----TGATCATAA-ATC----TCCTT-CACAGGT-C---CACAAATT-T-C-AATTT-T-T-GC-AA-CAAA-TTGC-G-AG-GTAAACCNGA-AT---T-TTT----TTGGCCTCAGCT-TATTTAA--A---T-AT--GAGG-TA--AGCTT----TG---ACCAAA------TT-GAAAG--TC----------CAATTATACA-TT--AAT-GC--ACT---------------------GG----TT----T-G-AT-----T--TGTT---TTT---T---CTCT--ACTT-----CTTTGTA-TG-AAA-CGTTTT-TCCC---AATTTCAAGC-AAA--TG-TCG-C----TAATT-TTTCC-CAATTGGAAAGGCCCTGGCCCCT-GATATC-AAGAC-CT-AAAAAATCC
Reference ( family-16 ) : TTTTTTA-AATTCCTCCCAA-AC-ATGAA--AAN--AA-T----C-AA---AA--CGGGGTGCC---TTAT----TGATCATAA-ATC----TCCTT-CACAGGT-C---CACAAATT-T-C-AATTT-T-T-GC-AA-CAAA-TTGC-G-AG-GTAAACCNGA-AT---T-TTT----TTGACCTCAGCT-TATTTAA--A---T-AT--GAGG-TA--AGCTT----TG---ACCAAA------TT-GAAAG--TC----------CAATTATACA-TT--AAT-GC--ACT---------------------GG----TT----T-G-AT-----T--TGTT---TTT---T---CTCT--ACTT-----CTTTGTA-TG-AAA-CGTTTT-TCCC---AATTTCAAGC-AAA--TG-TCG-C----TAATT-TTTCC-CAATTGGAAAGGCCCTGGCCCCT-GATATC-AAGAC-CT-AAAAAATCC
gi|1 : TTTTAGAATTCC--CAAA-AC-ATGAC--AAT--AAAT----C-AA---AA--TGGGGTGCC---TTAA----TAGCGACAA--TC----TCTTT-CACAGGT-C---CATGAATT-T-T-AATTT-T-T-AC-AG-CAAA-TTGA-G-AA-GCAAATGAAA-AAAAAT-TAT----TTGGCTTCAGCT-TATATAA--A---T-A----AGG-TA--AGCTT----TATTAATCAAA------TT-GAAAG--TC----------CAGTTGTACA-TC--AAT-GC--ACT---------------------GG----TT----T-G-GT-----A--CTTT---CTT---G---CTCT----CT-----CTCTGTA-TT-AAA-CTTTTT-TCCC---AATTTCAAAC-AAA--TG-TCG-C----TAGTT-TTTC-----TT----------TGGCCCCA-GATATT-AAGACTTT-AAAAAATC
gi|10 : ttaggggccgaaataaggccccattaccattgctataaagcagataattttttcttaatttttgCCAAA-AC-ATGAC--AAT--AAAT----C-AA---AA--TGGGTTACA---TTAC----TAATTATAA-ATA----TCCTT-CTCAGGT-C---CATAAATT-T-----------T-GC-AA-CAAA-TTGA-G-ATTGCAAA--TGATAT---TATTT----TTG-CCTCAGCT-TATT--A--G---T-A----AGA-TA--AGTTT----TA---ACCAAA------TT-GAAAG--TC----------CAATTATACA-TT--AAT-GC--AAT---------------------GG----TT----T-G-GT-----T----CT---CTC---T---CTAT--ACTT-----ATCTAT--TA-AAATTGTTTT-TCCC---AATTTCAAGC-AGA--TG-TGG-CTACTTAATT-CTTCC-CAACTGGAAAGGCCCTGGCCCCT-GATATA-AAtctgaaat
gi|11 : c-AATTT------C-AA--GAA-CTCT-G-AA-GTAAGTCAGA--T---T-TCT----TTGGCCATTGCT-TATTTAA--A---T-----GAGG-TC--AGCTT----TG---ACCAAA------TT-AAAAG--TCACAAGGAGTCCAATTATACC-TT--GAT-GC--ATTGTTTGGTTTTGGGGGGGGGGGGG----TTGTTTT-G-TT-----T--TGTT---TTTGTTT---CTTT--GTTTTTGTTCTTCGTA-TG-AAA-CATTTTCTTCC---AATTTCAAGC-AGA--TA-TTG------TAATT-TTTCC-CAATTGGTAAGGC
gi|12 : caaaaaTA-AATTCCCACTAATAC-ATGGA--AAA--AA-TAAATC-AA---AA--TGAGGTGGCAATTTGTAACTTAATCATAA-ATC----TATAG-CACAGGT-
gi|13 : tttttttagggatctgttgcagggagctccatcgacaaaaatagaggccccatttccagtaccgcactaaaattatgagtactttgaatcacgtaccaatttagttgtaaataaaG----TT----T-G-GT-----T--C--T---CTC---T---CTAT--ACTT-----GTCTATT-AA-AAA-CGTTTT-TCCC---AATTTATAGC-AAA--TA-TCG-C----TAAATATTTCC-CAAATGGAATGTCCCTGGCCCCT-GATACT-AAGAC-CT-AAAAAA
gi|14 : TACA-TT--AATTGTTTATT---------------------G-----TT----T-A-ATAATTGT--TGTT---TTT---T---CTAT--AATT-----AGTT----CG-AAA-TAAATT-TCC----AATTTCAACC-AAA--TG-TCG-T------ATT-TTTCC-CAAATATGATGGCCCTGGCCCCTGGAT-TC-AAATG-GTAAAAAAATCCatctgtcatggacctcactcatcatatcgggaatggtgggaaaacgttgaccaaattat
gi|15 : TTTAA-AATTCCT---AA-A----GAA--TGT--GA-T----C-AA---AG--CAGGGTGAC---TTAT----TGATCATAA-ATC----TCATT-CACAGctgggtctatacatcgaaagcagctgacagatc
gi|16 : ataggggctgaaataaggccccactatcaatgcataaaagcaggtgttttcttcaacttttgcCCAAA------AT-CAAAA--TC----------CAAATATACA-TT--AAT-GT--ACT---------------------GG----TT----C-G------------GTT---TTTA--T---CTCT--ACTT-----C---------------------------------CAAGC-AAA--TG-ACG-C----AAATT-TTTCC-CAATTGTAAAttaca
gi|2 : AT----TGAAAATAA-AACATGGTGCTT-CACAGGT-C---TTCTGATT-A-A-CATTT-T-T-GC-AA-CGAA-TTGT-GTAG-ATAAACTAAA-AA---T-TC-------GAACAAA-----ATTCAA--G---T-CCA-GTGG-TA--CGTT--------------AA------TG-AAAAG--GC----------AAAG-ATA-A-TT--AAT-GT--ACT---------------------GG----TT----T-GGAT-----T--T------TTT---T---CTCT--A----------TTGTA-TG-AAA-TGTTTA-TCCC---AATTTCAAGC-AAA--TG-TTG-C----TTATT-TTTCC-CAACTGGAAAGGCCCTGGCCCCT-GATATT-AAGAC-CT-AAAAAATCC
gi|20 : gtctgtaggggggtgaaataaggccccattcccaatgctaaaaagcaggcatttttcccaatttttgctcaataattgttccga-TCCC---AGTTTAAAGC-AAA--TG-TCG-C----TAATT-TATCA-CGGTTGGAAAGGACCTGGCCCCctgtattatctcatcataagaaaactgaagatca
gi|3 : TTTTTCC-AATTT-TCCCAA-AC----------------T----C-AA---AA--CAGGGTGAT---TTAT----TGATCATAA-ACC----TCCTT-TACAGGT-CTGTCACAAATT-T-TTAATTT-T-TTGC-GA-CAAA-CTGT-G-AA-GTAAACC-GA-AT---TGTTT----TTG-CATCAGCG-CATTTAA--AAAAT-ATCTGAGG-TATAAGCTTAATTTG---ACCAAA------GT-GAAAG--TC----------CATTTATACA-TT--AAT-GC--ACT---------------------GG----TT----T-G-TT-----T--GGTT---TTT---TTTCCTCTCAATTT-----CTTTGTA-TG-AAA-TATTTT-TCAA---AATTTCAAAC-AAA--TG-CCA-C----TAATA-TATTC-CAATTAGAAAGGCCATGGGCCCT-GCTATC-AAGAC-CT-AAACAAag
gi|4 : ggccaatataaagccccattcccaatgcaaaaagcaggtatA-ATTTCCACCCAA-A---TGAG--AAA--AA-T----TTAA---AA--T-----------TTGT----GGATCAATA-ATC----TCCTTTCACAGAC-C---CACAAATT-T-C-AATTT-T-T-GC-AAGCAAA--TGT-G-AG-GTAAACCA-A-CC---T-TTT----TTG-CCTCAGCT-TATTTAA--A---A-AT--GAGGATA--AA-TT----TG---ACCAAA------TTGGAAAG--TC----------CAAATTTACATTT--AAT-GA--ACT---------------------A-------------------------TGTT---CCTGG-T---CTCT--ACTT-----TTTTGGG-GG-A----GTTTT-TCCCTCAAACT--AAGCAAAA--TG-TCG-C----TGATT-TTTCCGCAACCAG-AAGGTCTTGCCTCCT-GATATCTAAAAC-aa
gi|5 : ttagggttgttagacgggatgaaatagggccccattcccagtgctgcaaaacaggtatttcccccaattttcgcttaacTTTA-AATT--TCCCAA-ACTATGAATTAAT--A--T----C-AA---AG--CAGGTAGGC---TTGT----TGTTCATAA-ACC----TCTTA-CACAGAT---------AA-----C-AATTT-T-T-GC-AT-CAAA---------G-G-AAACCTAA------T-TTT----TTGGCCTCTGCT-TAATTAG--A---C--T---AGG-TA--AGCTT----TG---GCCAAACGAAAGTC-GAAAAAATC----------TAATTATACC-AT--AAT-GC--AAT---------------------GG----TT----T-A-A-----------AT---TTT---T---CCCT--ACTT-----CT
gi|6 : gggtctgtaaggggccaaaataagattccattcccaatgctaaaaacagatattgttccaattttacTTTTTTA-AATTCCTCCCAA-A---TGAA--AAAT-AA-T----T-AA---AA--TAGTATGCC---TTAG----TGATCATAA-ATC----TTCTC-CACAGGC-C---CACAAATT-T-T-AATTT-A-T-GC-AG-CAAA-TTGC-G-AG-GTGAACCTGA-CT---T-TTTCCATTTGA----AGAT-TATTTAA--A---T-AT--GAGG-TA--AGGTT----TG---ACCAAA------TT-GAAAG--TC----------CAAATATACA-TT--AAC-GA--ATT---------------------GG----TT----TAA-AT-----T--TGTT---TTTA--A---CTCT--ACTT-----CTTTGTA-TG-GAA-CGTTTT-TCCG---AATTTCAAGC-AAA--TG-TCG-C----TGATT-TTTCA-CAATCGGAAAGGCCCTGGCCCCT-GATATC-AAAAC-CT-AAGAAATCCcaaacaaatgtcactatcacgaccttacagaaaccctggcatcatgtatct
gi|7 : CCAA-A--ATGAA--AAC--AA-T----T-GA---AA--TGGGGTGCC---TTAT----TGATCATAA-ACC----TCCTT-CACA-GT-C---TTCAGATT-T-C-CATTT-T-T-GC-AA-CAAC-TTGT-G-----------------------------TTGA----AA----ATCTAAAGA---T-AT--GA-A-TA--A-------------ATCAAA------------AG--TC----------CAATCATACA-T----GT-AC--ATT---------------------AGGTCATT----T-A-AG-----TGATATTAGATTT----------T--ACT--------------TG-AAA-TGTTTT-TCCC---AATTTCAACC-AAAGCTG-TTATT----TAATT-TTTCC-CAATTGGAATTGCCCTGGCCCCT-GATATG-AAGGC-GT-AAACAA
gi|8 : gccactgctataaagcaggtattttacccaatgtttgctctaaaataaaaaaaCCTCCCAA-A---TGAA--AAATAAA-T----T-AACTTAAGTTAGTATGCC---TT-T----AGACCTCAACATC----TTCT----CAGGTTC---CACAAATTATGC-AATTTATGT-GCTAG-CAAAATTGCAG-AGCGTGAACCTGA-AC---T-TTT----CC-ATTTAAGATATATTTAA--AGGTTGAT--GAGG-TA--AGGTT-----G---ACCAAA------TT-GAA-G--TC----------AAAT-ATACA-TTGAAAT-TA--GGT---------------------GG----TT----A-A-AT-----T--TGTT---TTT---TAA-CTCT--ACTTT----CTTTGTAATGCGAA-CGTTTT-TTCG---ACATTCAGCC------TGGTCG-------GATT-TTTCA-CAATCGGAAAGGCCCTGGCCCGT-GATATC-GAgaaat
gi|9 : TTTTG-AATTCC-CCAAA-AC-ATGAC--AAT--AAAT----G-AA---TA--TGAGGTGCA---TTAC----TAATCATAA-ATC----CTCAT-CACAGGT-T---CAAAAATT-T-C-AAATT-C-T-GC-AA-CAAA-TTGA-G-AA-GCAAA--TGA-AT---TATTT----TTGGCCTCAGTT-TATCTAA--A---T-A----AAG-TA--AGCTT----CA---ACCAGA------TT-AAGAG--TC----------CATTTATACA-TT--AAT-GG--GCT---------------------GG----TT----T-T-GC-----T----CT---TTC---T---CTCT--ATTT-----CTCTGTA-agt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GGGGGGGGGGGGGTTATGGTCTTTTAAAAGCTAATGTACTGCCCCACTCCAAAGTGCTAAATAAATGTGTGTATTTCTCCCAAT
Unaligned ( gi|18 ): TAGAGAGCCAAAATAATGCCCCATTCCCAAAGCTAAAAAGCACGTATTGTCCCTAATTTTTGCTTTAAAATTCGGAA
Unaligned ( gi|19 ): AAGAGTGTGTAGAGAGCTGAAACGAGGTCCCATTTCATATACTAGAAAGCAGGTAATTTGGTCAATTATT
Unaligned ( gi|21 ): TTTTTAAGGGTCTGTGAAGGGTCCAAAATAAGATTCCATTCCAATGCTAAAAAGNAA
Unaligned ( gi|22 ): ATCATATAAGTCAAGAATGTCTGGGAAGTCGCTCAACTTGT