lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 22222222222222222222222222222222222222222222222 111111 111111111111111111111111111111111111111111111111111111111111 11111111
lowQualScore : 11111 555555555555555555 111 6666666666666666666 11 2222 111 11 11 33333333 22 222 1 2222 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 44444 6666666 2 2 3333 1 1 1 555555555 1 22222 1 11 1 1 1 3333 111111 11111 1111 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 111111 11 2222222 1 88888888888888888888888888888888888888888888888 2 2222 1 111111 11 222222222222222222222222222222222222222222222222222222222222 1 1 00000000 1 444 1
lowQualScore : 1 99 6 3 55555 99 777777777777777777 3 5 5 444 0 11 7777777777777777777 2 33 8888 3 2 66 1 777 33 3 33 55555555 2 3 3 3 00 111 6 8888 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 5 66666 5555555 3 4 0 4 8888 3 5 7 3 666666666 5 77777 3 88 3 3 6 7 8888 66 999999 77777 2222 6 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 5 999999 3 11 7777777 0 6 33333333333333333333333333333333333333333333333 0 8888 3 6 1 555555 22 2 000000000000000000000000000000000000000000000000000000000000 0 0 0 33333333 6 5 111 5
lowQualScore : . .. . . ..... .. .................. . . . ... . .. ................... . .. .... . . .. . ... .. . .. ........ . . . . .. ... . .... .................................................................................................. . ..... ....... . . . . .... . . . . ......... . ..... . .. . . . . .... .. ...... ..... .... . ........................................................................................................ . ...... . .. ....... . . ............................................... . .... . . . ...... .. . ............................................................ . . . ........ . . ... .
lowQualScore : 8 22 7 5 22222 22 777777777777777777 5 8 2 000 8 00 5555555555555555555 5 00 2222 2 2 00 2 555 88 2 88 88888888 5 2 2 2 77 000 0 3333 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 5 00000 0000000 0 0 0 0 0000 3 0 3 3 000000000 0 77777 3 33 3 3 0 3 8888 88 222222 77777 1111 7 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 7 222222 0 00 8888888 0 0 55555555555555555555555555555555555555555555555 0 0000 3 0 0 000000 00 5 000000000000000000000000000000000000000000000000000000000000 7 0 0 00000000 0 5 000 0
consensus : CAGAAAGNGTTGTACCAAAATTGTGAA--TTTCGC-AACGCAAG----GG--TTCTGA-ACTAGA-CCCAGG-CGGATCCAAAATAGTCATATNATGATGTCGA---AAATGTGTAGCAAATTCACTTGTTTGTGTTGCT-CG-------------TAAAAATCACC-GGGA--GGGTATATTGCGCCTAGAAGTTGATG---AC--AATCAA--TCG------T-TNATATCTTCATCTATA-TGATTTGC-AT-GCCTT----TTTTT------A---------CT---TTC-GATNA--AN-----A--ATCAATATCGAATATNAGCANCGAAGGTTT--AAGGGTGATNTAGATTTGATAAANTTTTAAAACAGACGATTGTCCTTTTGAATTTCCTTTCCCTTGTTTCNAACCCTNAAAGGNCCGTGGATTGCAGATCGA-TCAACTGAAAGAATTTGGTGCGA-TTT-T----AACATGCA-A---GGGCAGTTCGTCAGCTA-TAT--AAACA-GT-GGATT-AAAGCTTCT---ATACTAATCC------AAA----CTGTAACTCTGTTTC----AATG-ACAGTA------TGTAGA-TTTTTCA--AATTTAA-ATTTTGATCA---------ATATTCCTGTTGTTTA-------------------TC-TTT-------------TTTTT-ATCTTC------AAGGCAC--AA---ATTATTCCT-TTGCAGCATAAGT-AATTGATT------TA--TA--------------GGATTTAGNCGCCGGTATTTGGCAATATT-TCAACCCTTTTCCGGTAGACAACT------ACATAAAATATCAGTTTTCGAGANTTTTGGGGCCACAATGGAGCTNNGACGGAATAAATG--CACA-G----TAT-C------CAT-TAATATC-TTTTT-GGCATTT------A-TGTCGTTCGTCACCTTCGTTTCA-G-ACTTTCAG
Reference ( gi|2 ) : CAGAAAGTGTTGTACCAAAATTGTGAA--TTTCGC-AACGTAAG----AG--TTCCGA-ACTGGA-CCCAGG-CGGATCCAAAATAATCATATTATGATGTTGA---AAATGTGTAGCAAATTCACTTGTTTGTGTTGCT-CG-------------TAAAAATCACC-TGGT--AGGTATATTGTGCCTAGAAGTTGATG---AC--AATCAA--TCG------T-TCATATCTTCATCTATA-TGATTTAC-ATAGCCTT----TTTTT------A---------CT---TTC-AATCA--AA-----A--AT-AATATTGAATATT--TACCT---GTTTACACGGGTGGTAT-GATT--GTGAGCTTTTAAAACAGA--A--GTCCTTT-------CCTTTCTCTTGTCTCTA-CCTTTAA---TCCGTGGATTGCAGATCGA-TCAACTGAAAGCATTTGGTGCAA-TTTGT----AACATCCA-A---GGGCAGTTCGTCAGCTA-TAT--AAACA-GT-GGATTAAAAGCTTC----ATATCAATCC------AAA----TTGTAACTCTGTTTC----AATG-ACAGTACATTTATGTAGA-TTTTTCA--AATTTAA-ATTTTGATCA---------ATATTCCTGTTGTTTA-------------------TCGTTT---------A---TTTTT-ATTTTC------AAAGCAC--AA---ATTATTCCT-TTGCAGCACAA-----------------TA--TA--------------GGATTT----GCC-GTATTTAGCAATATT-TTAACCCTTTTCTGGTAGACAACTACTGTAACATAAAATGCCAGTTTTTAAGACTTT-----------TGGAA-TAAAACAGAATAGATA--TACA-G----TAT-C------CAT-TAGTATC-TTTTT-GGCATTTAGTGTAACTGTTGTTCGTTACCTTCGTTTCA-A-ACTTTAAGC
gi|3 : CAGAAAGTGTTGTACCAAAATTGTGAA--TTTCGC-AACGCAAGCTCAAGGATTCTGA--CTAGG-TCCAGGGCGGATCCAAAATAGTCATGTTATGATTTCGA---AAATGTGTAGCAAATTCACTTCTTTGTGCTGCT-TG-------------TAAAAATCACT-GGGA--GGGTATATTGCGCCTAGAAGTTGATG---AC--AATCAA--TCG------T-TCATATCTTCATCTATA-TGATTTGC-ATAGGCTT----TTTTT------AAATTTATTTCTACATTC-AATGA--AG-----ATAATCAATATTGAATATT--TAC-----------AAGGGTGATA------------ACTTTTAAAACAGA--A--GTCCTTT-------CCTTTTCCTTGTTTCAA-CCTTAAA---TCCGTGGATTGCAGATCGA-TCAACTGAAAGAATTTGGTGCAG-TTTTT----A-CATGCA-ACCTGGGCAGTTCGTCAGCTAGTATTTAAACT-GT-GGATTAAA-GCTTCTGA-ATACTAATCC------AAA----CTGTAACTCTGTTTC----AATGGACAGTA------TGTAGA-TTTTT---------AA-ATTTTGATCC---------ATAT-CATGTTGTTTA-------------------T--------------------TTT-ATTTT
gi|1 : atcatttgaCAGAAAGCGTTGT-CCAAAATTGTGAAGTTTCCGCGAACGCAAA----GG--TTT--G-ACTAGATCCCAGGGCGGATCCAAAATAGTCATATGATGATGTCGACAGGAATTCGCAGCTAACGCAATAG-------------G-------------TGGGGGTCACCGTTGTCCAAGTGTGT-GTGC--GGAAGTTGTTGTAAACGGAATCAAGGTCG------G-ACATATCT-CATC-ATAATGATTTGCCAT-GCCTT----TTTTTTTTTTTA---------CT---TTCCGATCG--AACGATAA--AT-CATATTGAATATGAGCAGCGAAGGTTT------GTAATTTAGATTTGATAAAGTTTTAAA-CAGACGATTGTTCTTTTGAATTTCCTTTCTCTTGT-TCTAACCCTTAAAGGGCCGTGGATTGCAGATCGAATCAAATGAAAAGA------ACGA-TT-GTGGAGAACATGCACA---GAGGAGTTCGTCAGCTA-TAT--AAACATGTAGGAGTTTAAGCCTCTCCTACATAAATCCCCACACAAACAACTGGTAACTCTGTTTC----AATG-ACAGTA------TGTAGAGTTTTTCA--AATTTAATATTTTTATCA---------ATAT-CCTGCTATTTA-------------------TCGTTTTGTTGGTTTG---TTTTTCATTTTTCGGGGAAGAGCACCCAACACATT--TCCTCTTGCAGCATAAGT---------------TAATTAATTTATTTTAATCTGGATTTAAGCGCCGGTA-TTGGCAATATTATCAACCCTTTTCCGGTAAACAatt
gi|7 : cagagaatagggcagtgatttggtaccagaattagagctagatgatcactgtgattattatttttatcattgaCAGAAAATGCTGTACCAAAATTGTGAA--TTTTGC-AACGCAAG----GG--TTCTGA--CTGAA------------TCCAAAATAGTCATATACTGATGTCGA---AAATGTGTAGCAAATTCACTTGTTTGTGTTGGT-CG-------------TAAAAATCACC-GGGA--GGGTATATTGCGCCTAGGAGTTGGTG---AC--AATCAA--TCGTTGATAT-TGATATCTTCATCTtatccctcacaatatatctggtgaaagcttggagcctcaaatggaactgcacacagtagattaccgggcatgggtctttactaattatttcccatgggtagtaagtaactcccttttttggcatttttagtgttgttcgtcaccttcgtttcacgactttcagtactttgat
gi|13 : ttatttgaCAGAGATAGATGTACCAAAATTGTGAA--TTTCAC-AACTCCAG----GG--TTCTAACACTATA-T---AG-CGGGTCCGATATAGTTAT
gi|12 : tgcatatttatgaagtgAGAAAGTGTTGTACCAAAATTGTGAA--TTTCGC-AACGTAAG----AG--TTCCGA--CTGGA-CCCAGG-CGGATCCAAAATAATCATATTATGATGTTGA---AAATGTGTAGCAAATTCACTTGTTTGnccaaaattgtgaatttcac
gi|6 : AGAAAGGGTTGTACCAAAATTTTGAA--TTTCGA-AAAGCTAT----GG--TTCT-A-ATT------------GAATCCAAAATAGTCATATGACGGTGTAGA---AAATGTGTAGCAAATTCACTTGTTTGTATT-CTACATAAAGATGTGAATTAAAAATCA-C-TGGG--CGGTATATTGCGCCAAGAAGTTGATG---AC--AG-------CG------TATAATG-CTTCATCTGCA-----TTA--ATTGCCTTACCATGTTT------A---------CT---TTC-AATTAGGAT-----A--ATCAATATCGAATA
gi|8 : tatcatttgaaAGATCGA-TCAACTGAAAGAATTTGGTGCAAATTT-------ACATGCA-A---GGGCAGTTCGTCAGCTA-TAG--AAACA-GT-GGATT-AAAGTTTC----ATACTAATCC------AAG----CTGTAACTCTGTTTC----AATG-ACAG------TAGGTAGA-TTTT--A-------AA-ATTTTGATCA---------ATA-TCCTGTTTTTCA-------------------TC-TTT-------------TCTTT-ATTTTC------AA
gi|9 : TTA----ATACTAATCA------AAA----CTGTAATCCTGTTTC----AATG-ACAGT-----------------------AATTTGA-ATTTTGATAA---------ATA-TCCTGTTGTTTA-------------------TC-T---------------TTTTT-ATTTTC------AAGGTAC--AG------ATTCCT-AGGCAGCATAAGTTAATTGATTT-----TA--TA--------------GGATT
gi|16 : tctCAATCC------AAA----CTGTAACTCTGTTTC----
gi|14 : tgcggtaaaactaatgATCC------AAA----CGGTAACTCTAATTCTGCCAATG-AAAGTGGATG---GTGCA-TTTTTTAGAAATTTAA-ATTT---------------AT-TTACTGTTGTTTA-------------------TC---T-------------TTTTT-ATCTTC------AAGGCAC--Atgttgaaagtgtgtacatgt
gi|4 : CTCTGTTTT----AATG-ACAGTA------TGTAGA-TTTT-CA--AATTTAA-ATTTGAATCATTTTTTTTTTTTTTTTTTTTGTTTAAATTCGGATCAATTTCCTGTTGTTT---------ATCTTTTTT-ATCTTC------AAGGCCC--AA---GTTCTTCCC-TTGCAGTAgtt
gi|5 : TTTTTTT-------------------TCTTTT---------T---TTTTT-TTCCCC------AAGGTAC--AA---ATTATTCCT-TTGCCGCATAAGTGAATTAATTGATTTTTA---A--------------GGACTTAGC-GCC-ATATT-GGCAATATT-TCAACCCTTTTCCAGTAGACAACT------ACATAAAATATCAGTTTTTAAGACTTTTGGGGCCACAATGGAA-TGAAACAGAATAGATG--CACA-GCACATATCC------CAT-TAGTATC-TTTTTAGGTATTTAG------TGTTGTTCGTCACC-TCGTTTCAGA-ACTTTCAGttaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagacaactctataaataaatacatgtatctcattacatgtaatatcattttggcattttgtgtcgttcgtcacctcttttcagtactttg
gi|11 : tttatttatctATATT-TCAACTCTTTTCTGGTAGGAAACT------ATATAAAATATCAGTTTTCGAGAATTT-----------TGGAGCTCTGATGGAATGAA-----ACA-G--------------------AATATCTTTTTT-GGCATTT------ACAGTCGTTCGTCACCTtacttt
gi|4 : gcgatATAAATAAATACATG----TAT-CTCATTACATGTAATATC-ATTTT-GGCATTT--TG----TGTCGTTCGTCACC-TCTTTTCA-GTACTTT
gi|1 : ctctgttttaatgacagtatgtagattttcaaatttaaatttgaatcattttttttttttttttttttgtttaaattcggatcaatttcctgttgtttatcttttttatcttcaaggcccaagttcttcccttgcagtattaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagacaactct-TTTTT-GGCATTT----TTAGTGTTGTTCGTCACCTTCGTTTCACG-ACTTTCAGg
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): GAATAGATTAATTGTGTAGAGGTTTAAAGCCGCTTTTGGCAATAATTTAGCCATTTTATGGTGGTTAACTACATGAAATATGTTCTGTATTGAAGGCTTCAATAGGAGTTTCCCTGGAAAAGGAAGAATAGATAC
Unaligned ( gi|15 ): TCAAATTATTTATCTTGCAGCATAGGTTAATTAACTTATTTATATGGTATATCACCGTATTGGCAATAGTTTAGCTATTTACAGTG
Alignments
lowQualScore : 11111111111111111111111111111111111111 11111111111111111111111111111111111111111111
lowQualScore : 111111 333333333333333 111 4444444444444444444 111111 111 11 11 22222222 1 22 666666666666666666 11 333333333333 00000000000000000000000000000000000000 55555 6666666 2 3333 1 1 22222222 11111 1 11 1 1 1 1 4444 22222222 1111 222222222 222222 11 222222222222 11111 1111 1 44444444444444444444444444444444444 2222 11 333333333333 11 5555555555555555555555 00000000000000000000000000000000000000000000 222222 111 1 5555555555555 1 222
lowQualScore : 1 66 5 666666 999999999999999 1 111 4444444444444444444 555555 6 0 1 444 11 0 11 66666666 1 0 0 8 7 0 33 777777777777777777 22 1 555555555555 2 3 2 44444444444444444444444444444444444444 1 7 11111 5555555 0 7 1 3 1 0000 0 0 3 2 33333333 88888 0 33 0 0 0 0 0000 00000000 5 5 5555 5 000000000 5 4 0 000000 5 3 3 22 0 555555555555 4 4 3 44444 6 77 3333 3 3 6 44444444444444444444444444444444444 4444 55 11 9 5 111111111111 1 3 22 11 1111111111111111111111 2 33333333333333333333333333333333333333333333 333333 444 6 5555555555555 0 444
lowQualScore : . .. . ...... ............... . ... ................... ...... . . . ... .. . .. ........ . . . . . . .. .................. .. . ............ . . . ...................................... . . ..... ....... . . . . . .... . . . . ........ ..... . .. . . . . .... ........ . . .... . ......... . . . ...... . . . .. . ............ . . . ..... . .. .... . . . ................................... .... .. .. . . ............ . . .. .. ...................... . ............................................ ...... ... . ............. . ...
lowQualScore : 0 99 0 444444 777777777777777 0 777 2222222222222222222 000000 0 8 0 000 00 8 00 88888888 0 8 8 0 0 0 88 222222222222222222 00 0 555555555555 5 2 0 00000000000000000000000000000000000000 0 3 77777 3333333 7 3 0 7 0 0000 0 0 2 0 00000000 55555 0 88 0 0 0 0 8888 77777777 7 7 6666 0 222222222 0 4 1 888888 0 1 1 66 1 777777777777 4 4 6 33333 7 99 3333 2 3 7 22222222222222222222222222222222222 7777 55 77 0 7 222222222222 0 8 88 88 5555555555555555555555 0 66666666666666666666666666666666666666666666 000000 000 0 0000000000000 6 000
consensus : CAGAAAGTGTTGTACCAAAATTGTGAA--TTTCGC-AACGCAAG------GGTTCTGA-ACTAGA-CCCAGG-CGGATCCAAAATAGTCATATNATGATGTCGA---AAATGTGTAGCAAATTCACTTGTTTGTGTTGCT-CG-------------TAAAAATCACCG--G---GAGGGTATATTGCGCCTAGAAGTTGATG---AC--AATCAA--TCG------T-TCATATCTTCATC-TATATGATTTGC-ATA-GCCTTTTTT-----------T------ACTTTC-AATCA--AA-----A--ATCAATATTGAATATT-GCA-C----GTTT--A-GGGTGAT-T-GATT--GTGAACTTTTAAAACAGA--A--GTCCTTT-------CCTTTCTCTTGTTTCTA-CCCTTAAA--TCCGTGGATTGCAGATCGA-TCAACTGAAA-GAATTTGGTGCAATTT-T----AACATGCA-A---GGGCAGTTCGTCAGCTA-TA--TAAACA-GT-GGA-TTAAA-GCTTCT---ATACTAATCC--------A-AACTG-TAACTCTGTTTC----AAT-GACAGT--A------TG-TAGA-TTTTTCA--AATTTAA-ATTTTGATCAATATTCCTGTTGTTTATC-----------TT-T-TTTTTATTTTC-----AAG-GCAC--AA---ATTATTCCT-TTGCAGCA-TAAGT-T-----AATTA----A-TT-TAT----A---G-GATTTAA-CGCCGGTATTTGGCAATATT-TCAACCCTTTTCCGGTAGACAACTA-----C------ATAAAATATCAGTTTTTGAGANTTTTG-GGGCCTC-AAT-GGAGCTGCGACGGAATAGAT------GCACGG--C---------TAT---C------CATG--TAGTA------TC---TTTTT-GGCATTTT--AG------T-GTCGTTCGTCACCTTCGTTTCA-G-ACTTTCAG
Reference ( family-1573 ) : CAGAAAGNGTTGTACCAAAATTGTGAA--TTTCGC-AACGCAAG------GGTTCTGA-ACTAGA-CCCAGG-CGGATCCAAAATAGTCATATNATGATGTCGA---AAATGTGTAGCAAATTCACTTGTTTGTGTTGCT-CG-------------TAAAAATCACCG--G---GAGGGTATATTGCGCCTAGAAGTTGATG---AC--AATCAA--TCG------T-TNATATCTTCATC-TATATGATTTGC-AT--GCCTTTTTT-----------T------ACTTTC-GATNA--AN-----A--ATCAATATCGAATATNAGCANCGAAGGTTTA-A-GGGTGATNTAGATTTGATAAANTTTTAAAACAGACGATTGTCCTTTTGAATTTCCTTTCCCTTGTTTCNAACCCTNAAAGGNCCGTGGATTGCAGATCGA-TCAACTGAAA-GAATTTGGTGCGATTT-T----AACATGCA-A---GGGCAGTTCGTCAGCTA-TA--TAAACA-GT-GGA-TTAAA-GCTTCT---ATACTAATCC--------A-AACTG-TAACTCTGTTTC----AAT-GACAGT--A------TG-TAGA-TTTTTCA--AATTTAA-ATTTTGATCAATATTCCTGTTGTTTATC-----------TT-T-TTTTTATCTTC-----AAG-GCAC--AA---ATTATTCCT-TTGCAGCA-TAAG--T-----AATTG----A-TT-TAT----A---G-GATTTAGNCGCCGGTATTTGGCAATATT-TCAACCCTTTTCCGGTAGACAACTA-----C------ATAAAATATCAGTTTTCGAGANTTTTG-GGGCCAC-AAT-GGAGCTNNGACGGAATAAAT------GCACAG------------TAT---C------CAT---TAATA------TC---TTTTT-GGCATTT---A-------T-GTCGTTCGTCACCTTCGTTTCA-G-ACTTTCAG
gi|1 : CAGAAAGCGTTGT-CCAAAATTGTGAAGTTTCCGCGAACGCAAA------GGTT-TGA--CTAGATCCCAGGGCGGATCCAAAATAGTCATATGATGATGTCGACAGGAATTCGCAGCTAACGCAATAG-------------G-------------TGGGGGTCACCGTTGTCCAAGTGTGTGT-GCG----GAAGTTGTTGTAAACGGAATCAAGGTCG------G-ACATATCT-CATCATA-ATGATTTGCCAT--GCCTTTTTT-----------TTTTTTTACTTTCCGATCG--AACGATAA--ATCA-TATTGAATATGAGCAGCGAAGGTTT------GTAATTTAGATTTGATAAAGTTTTAAA-CAGACGATTGTTCTTTTGAATTTCCTTTCTCTTGTT-CTAACCCTTAAAGGGCCGTGGATTGCAGATCGAATCAAATGAAAAGAA-------CGATTG-TGGAGAACATGCACA---GAGGAGTTCGTCAGCTA-TA--TAAACATGTAGGAGTTTAA-GCCTCTCCTACATAAATCCCCACACAAACAACTGGTAACTCTGTTTC----AAT-GACAGT--A------TG-TAGAGTTTTTCA--AATTTAATATTTTTATCAATAT-CCTGCTATTTATCGTTTTGTTGGTTTGT-TTTTCATTTTTCGGGGAAGAGCACCCAACACATT--TCCTCTTGCAGCA-TAAG--TT----AATTA----A-TT-TATTTTAATCTG-GATTTAAGCGCCGGTATT-GGCAATATTATCAACCCTTTTCCGGTAAACA--TATCCCTC------ACAATATATCTGGT---GAAAG-CTTG-GAGCCTCAAAT-GGAACTGC-ACACAGTAGATTACCGGGCATGGGTCTTTACTAATTATTTCC------CATGGGTAGTAAGTAACTCCCTTTTTT-GGCATTTTTAG-------T-GTTGTTCGTCACCTTCGTTTCACG-ACTTTCAG
gi|10 : cagagaatagggcagtgatttggtaccagaattagagctagatgatcactgtgattattatttttatcattgaATTA----A-TTGTGT----A---GAGGTTTAAA-GCCGCT-TTTGGCAATAAT-TTAGCCATTTTATGGTGGTTAACTA-----C------ATGAAATAT--GTTCT-----GTATTGAAGGCTTC-AATAGGAGTTtactttgat
gi|11 : gaatagATATT-TCAACTCTTTTCTGGTAGGAAACTA-----T------ATAAAATATCAGTTTTCGAGAATTTTG-G-------------AGCTCTGATGGAATGAA---------ACAG--------------------------------AATA------TC---TTTTTTGGCATTT---A-------CAGTCGTTCGTCACCTtccctggaaaaggaagaatagatac
gi|12 : gcgatAGAAAGTGTTGTACCAAAATTGTGAA--TTTCGC-AACGTAAG------AGTTCCGA--CTGGA-CCCAGG-CGGATCCAAAATAATCATATTATGATGTTGA---AAATGTGTAGCAAATTCACTTGTTTG
gi|13 : CAGAGATAGATGTACCAAAATTGTGAA--TTTCAC-AACTCCAG------GGTTCTAACACTATA-T---AG-CGGGTCCGATATAGTTATNCCA
gi|13 : tgcatatttatgaagtgGTTATNCCAAAATTGTGAA--TTTCAC-aaattgtgaatttcac
gi|14 : tgcatatttatgaagtgcagagatagatgtaccaaaattgtgaatttcacaactccagggttctaacactatatagcgggtccgatataATCC--------A-AACGG-TAACTCTAATTCTGCCAAT-GAAAGTGGA------TGGTGCA-TTTTTTAGAAATTTAA-ATTT------AT-TTACTGTTGTTTATC-----------TT-T-T--TTATCTTC-----AAG-GCAC--A
gi|15 : C--AA---ATTATTTATCTTGCAGCA-TAGGT-T-----AATTAACTTA-TT-TAT----A---T-GGTATA-TCACC-GTA-TTGGCAATAGT-TTAGCTATTTgtt
gi|16 : tAATCC--------A-AACTG-TAACTCTGTTTCT---GTT-GAAAGT--G------TG-TACA-Tacagtg
gi|2 : tgcggtaaaactaatgcCAGAAAGTGTTGTACCAAAATTGTGAA--TTTCGC-AACGTAAG------AGTTCCGA-ACTGGA-CCCAGG-CGGATCCAAAATAATCATATTATGATGTTGA---AAATGTGTAGCAAATTCACTTGTTTGTGTTGCT-CG-------------TAAAAATCACCT--G---GTAGGTATATTGTGCCTAGAAGTTGATG---AC--AATCAA--TCG------T-TCATATCTTCATC-TATATGATTTAC-ATA-GCCTTTTTT-----------T------ACTTTC-AATCA--AA-----A--AT-AATATTGAATATT--TACCT---GTTTACACGGGTGGTAT-GATT--GTGAGCTTTTAAAACAGA--A--GTCCTTT-------CCTTTCTCTTGTCTCTA-CCTTTAA---TCCGTGGATTGCAGATCGA-TCAACTGAAA-GCATTTGGTGCAATTTGT----AACATCCA-A---GGGCAGTTCGTCAGCTA-TA--TAAACA-GT-GGA-TTAAAAGCTTC----ATATCAATCC--------A-AATTG-TAACTCTGTTTC----AAT-GACAGT--ACATTTATG-TAGA-TTTTTCA--AATTTAA-ATTTTGATCAATATTCCTGTTGTTTATCG----------TT-TATTTTTATTTTC-----AAA-GCAC--AA---ATTATTCCT-TTGCAGCA-CAA-----------------------TAT----A---G-GATTT----GCCG-TATTTAGCAATATT-TTAACCCTTTTCTGGTAGACAACTA-----CTGTAACATAAAATGCCAGTTTTTAAGACTTTTG-G-------AAT-AAA------ACAGAATAGAT------ATACAG------------TAT---C------CAT---TAGTA------TC---TTTTT-GGCATTT---AGTGTAACT-GTTGTTCGTTACCTTCGTTTCA-A-ACTTTAAGgt
gi|3 : CAGAAAGTGTTGTACCAAAATTGTGAA--TTTCGC-AACGCAAGCTCAAGGATTCTGA--CTAGG-TCCAGGGCGGATCCAAAATAGTCATGTTATGATTTCGA---AAATGTGTAGCAAATTCACTTCTTTGTGCTGCT-TG-------------TAAAAATCACTG--G---GAGGGTATATTGCGCCTAGAAGTTGATG---AC--AATCAA--TCG------T-TCATATCTTCATC-TATATGATTTGC-ATAGGCTTTTTTTAAATTTATTTCT------ACATTC-AATGA--AG-----ATAATCAATATTGAATATTTACA------------A-GGGTGAT------------AACTTTTAAAACAGA--A--GTCCTTT-------CCTTTTCCTTGTTTCAA--CCTTAAA--TCCGTGGATTGCAGATCGA-TCAACTGAAA-GAATTTGGTGCAGTTT-T----TACATGCA-ACCTGGGCAGTTCGTCAGCTAGTATTTAAACT-GT-GGA-TTAAA-GCTTCTGA-ATACTAATCC--------A-AACTG-TAACTCTGTTTC----AATGGACAGT--A------TG-TAGA-TT---------TTTAA-ATTTTGATCCATA-TCATGTTGTTTAT------------TT-T-ATTTTATc
gi|4 : atcatttgaCTCTGTTTT----AAT-GACAGT--A------TG-TAGA--TTTTCA--AATTTAA-ATTTGAATC---ATTTTTTTTTTTT--------------TT-T-TTTTTGTTTt
gi|4 : -TTTTT-----GTTTAA-ATTCGGATCAAT-TTCCTGTTGTTTATC-----------TT-T-T--TTATCTTC-----AAG-GCCC--AA---GTTCTTCCC-TTGCAGTATTAAGNNN-----NNNNN----N-NN-NNN----N---N-NNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNTAGACAACTC-----T------ATAAAaaattcggatcaatttcctgttgtttatcttttttatcttcaaggcccaagttcttcccttgcagtattaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagacaactctataaataaatacatgtatctcattacatgtaatatcattttggcattttgtgtcgttcgtcacctcttttcagtactttg
gi|4 : ctctgttttaatgacagtatgtagattttcaaatttaaatttgaatcatttttttttttttttAATAAAT------ACAT-G------------TAT---CTCATTACATG--TAATA------TC---ATTTT-GGCATTTT--G-------T-GTCGTTCGTCACC-TCTTTTCA-GTACTTTtaaatacatgtatctcattacatgtaatatcattttggcattttgtgtcgttcgtcacctcttttcagtactttg
gi|5 : ctctgttttaatgacagtatgtagattttcaaatttaaatttgaatcattttttttttttttttttttgtttaaattcggatcaatttcctgttgtttatcttttttatcttcaaggcccaagttcttcccttgcagtattaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagacaactctataTCTTTTTTTTTCTT-----------TT-T-TTTTTTTCCCC-----AAG-GTAC--AA---ATTATTCCT-TTGCCGCA-TAAG--TGAATTAATTG----A-TT-TTT----AA--G-GACTTAG-CGCCA-TATT-GGCAATATT-TCAACCCTTTTCCAGTAGACAACTA-----C------ATAAAATATCAGTTTTTAAGACTTTTG-GGGCCAC-AAT-GGAA-TGAAACAGAATAGAT------GCACAGCACA--------TATC--C------CAT---TAGTA------TC---TTTTTAGGTATTT---AG------T-GTTGTTCGTCACC-TCGTTTCA-GAACTTTCAGg
gi|6 : tttatttaAGAAAGGGTTGTACCAAAATTTTGAA--TTTCGA-AAAGCTAT------GGTTCT-A-ATT------------GAATCCAAAATAGTCATATGACGGTGTAGA---AAATGTGTAGCAAATTCACTTGTTTGTATT-CTACATAAAGATGTGAATTAAAAATCACTG--G---G-CGGTATATTGCGCCAAGAAGTTGATG---AC--AG-------CG------TATAATG-CTTCATC-TGCATTAATTGC-CT--TACCATGTT-----------T------ACTTTC-AATTAGGAT-----A--ATCAATATCGAATAtacttt
gi|7 : tatcatttgaaCAGAAAATGCTGTACCAAAATTGTGAA--TTTTGC-AACGCAAG------GGTTCTGA--CT------------GAATCCAAAATAGTCATATACTGATGTCGA---AAATGTGTAGCAAATTCACTTGTTTGTGTTGGT-CG-------------TAAAAATCACCG--G---GAGGGTATATTGCGCCTAGGAGTTGGTG---AC--AATCAA--TCGTTGATAT-TGATATCTTCATC-T
gi|8 : ttatttgaAGATCGA-TCAACTGAAA-GAATTTGGTGCAAATT-T----A-CATGCA-A---GGGCAGTTCGTCAGCTA-TA--GAAACA-GT-GGA-TTAAA-GTTTC----ATACTAATCC--------A-AGCTG-TAACTCTGTTTC----AAT-GACAGT--A------GG-TAGA-TTTT--A-------AA-ATTTTGATCAATA-TCCTGTTTTTCATC-----------TT-T-TCTTTATTTTC-----AA
gi|9 : CTTTA---ATACTAATCA--------A-AACTG-TAATCCTGTTTC----AAT-GACAGT--------------------------AATTTGA-ATTTTGATAAATA-TCCTGTTGTTTATC--------------T-TTTTTATTTTC-----AAG-GTAC--AG------ATTCCT-AGGCAGCA-TAAGT-T-----AATTG----ATTT-TAT----A---G-GATT
Alignments
lowQualScore : 11111111111111111111111111111111111111 111111111111111111111111111111111111111111111111
lowQualScore : 111111 333333333333333 111 4444444444444444444 111111 111 11 11 22222222 1 5555555555555555 111 1 333333333333 22222222222222222222222222222222222222 22222 4444444 1 2222 1 1 11 1111 11111 1 11 1 1 1 1 4444 22222222 1111 222222222 222222 11 22222222222 22222 1111 1 222222222222222222222222222 1111 11111 333333333333 333333333 333333 222222222222222222222222222222222222222222222222 22222222222 11 1111 1 222
lowQualScore : 0 66 5 666666 999999999999999 1 111 4444444444444444444 555555 6 0 1 444 11 0 11 44444444 8 8 0 8 7 0 9 3 9999999999999999 777 0 0 555555555555 2 3 00000000000000000000000000000000000000 7 77777 3333333 6 4444 0 0 33 2 3333 3 88888 0 33 0 0 0 0 0000 00000000 5 5 5555 5 000000000 5 4 0 000000 5 3 3 22 0 55555555555 4 4 44444 6 77 3333 3 3 6 99 0 333333333333333333333333333 1111 88888 0 5 111111111111 5 55 11 0 111111111 8 222222 2 000000000000000000000000000000000000000000000000 66666666666 8 88 7777 0 8 0 444
lowQualScore : . .. . ...... ............... . ... ................... ...... . . . ... .. . .. ........ . . . . . . . . ................ ... . . ............ . . ...................................... . ..... ....... . .... . . .. . .... . ..... . .. . . . . .... ........ . . .... . ......... . . . ...... . . . .. . ........... . . ..... . .. .... . . . .. . ........................... .... ..... . . ............ . .. .. . ......... . ...... . ................................................ ........... . .. .... . . . ...
lowQualScore : 3 99 0 444444 777777777777777 0 777 2222222222222222222 000000 0 8 0 000 00 8 00 88888888 0 0 8 0 0 0 8 2 8888888888888888 555 0 2 888888888888 5 2 33333333333333333333333333333333333333 3 77777 3333333 0 7777 0 0 88 5 8888 2 55555 0 88 0 0 0 0 8888 77777777 7 7 6666 0 222222222 0 4 1 888888 0 1 1 66 1 66666666666 4 4 33333 7 99 3333 2 3 7 22 7 777777777777777777777777777 2222 00000 8 7 222222222222 6 22 88 8 444444444 0 222222 0 444444444444444444444444444444444444444444444444 00000000000 0 66 0000 8 0 6 000
consensus : CAGAAAGTGTTGTACCAAAATTGTGAA--TTTCGC-AACGCAAG------GGTTCTGA-ACTAGA-CCCAGG-CGGATCCAAAATAGTCATATNATGATGTCGA---AAATGTGTAGCAAATTCACTTGTTTGTGTTGCT-CG-------------TAAAAATCACCG--G---GAGGGTATATTGCGCCTAGAAGTTGATG---AC--AATCAA--TCG------TTCAT-AT-CTTCATC-TATATGATTTGC-ATAGCCTTTTTTT------A---------CT---TTC-AATCA--AA-----A--ATCAATATTGAATATT-GCA-CG----TTTA---GGGTGAT-T--GATT--GTGAACTTTTAAAACAGA--A--GTCCTTT-------CCTTTCTCTTGTTTC-ACCCTTAAAT--CCGTGGATTGCAGATCGA-TCAACTGAAA-GAAT--TTGGTGCAGTTT-TAACATGCA-A---GGGCAGTTCGTCAGCTA-TA--TAAACA-GT-GGA-TTAAA-GCTTCT---ATACTAATCC--------A-AACTG-TAACTCTGTTTC----AAT-GACAGT--A------TG-TAGA-TTTTTCA--AATTTAA-ATTTTGATCAATATTCCTGTTGTTTATC-----------TT-T-TTTTTATTTTC-----AAG-GCAC--AA---ATTATTCCT-TTGCAGCA-TAAG--TTAATTA----A-TT-TA---T-----A----G-GATTTAN-CGCCGGTATTTGGCAATATT-TCAACCCTTTTCCGGTAGACAACTA-----C------ATAAAATATCAGTTTTTGAGANTTTTG-GGGCCTC-AAT-GGAGCTGCGACGGAATAGAT------GCACGG-------C---TA-------T-C------CAT--GTAGTA------TC---TTTTT-GGCA-TTT----TAG-TGTCGTTCGTCACCTTCGTTTCA-G-ACTTTCAG
Reference ( family-1573 ) : CAGAAAGTGTTGTACCAAAATTGTGAA--TTTCGC-AACGCAAG------GGTTCTGA-ACTAGA-CCCAGG-CGGATCCAAAATAGTCATATNATGATGTCGA---AAATGTGTAGCAAATTCACTTGTTTGTGTTGCT-CG-------------TAAAAATCACCG--G---GAGGGTATATTGCGCCTAGAAGTTGATG---AC--AATCAA--TCG------TTCAT-AT-CTTCATC-TATATGATTTGC-ATAGCCTTTTTTT------A---------CT---TTC-AATCA--AA-----A--ATCAATATTGAATATT-GCA-CG----TTTA---GGGTGAT-T--GATT--GTGAACTTTTAAAACAGA--A--GTCCTTT-------CCTTTCTCTTGTTTCTACCCTTAAAT--CCGTGGATTGCAGATCGA-TCAACTGAAA-GAAT--TTGGTGCAATTT-TAACATGCA-A---GGGCAGTTCGTCAGCTA-TA--TAAACA-GT-GGA-TTAAA-GCTTCT---ATACTAATCC--------A-AACTG-TAACTCTGTTTC----AAT-GACAGT--A------TG-TAGA-TTTTTCA--AATTTAA-ATTTTGATCAATATTCCTGTTGTTTATC-----------TT-T-TTTTTATTTTC-----AAG-GCAC--AA---ATTATTCCT-TTGCAGCA-TAAG--TTAATTA----A-TT-TA---T-----A----G-GATTTAA-CGCCGGTATTTGGCAATATT-TCAACCCTTTTCCGGTAGACAACTA-----C------ATAAAATATCAGTTTTTGAGANTTTTG-GGGCCTC-AAT-GGAGCTGCGACGGAATAGAT------GCACGG-------C---TA-------T-C------CAT--GTAGTA------TC---TTTTT-GGCA-TTT----TAG-TGTCGTTCGTCACCTTCGTTTCA-G-ACTTTCAG
gi|1 : CAGAAAGCGTTGT-CCAAAATTGTGAAGTTTCCGCGAACGCAAA------GGTT-TGA--CTAGATCCCAGGGCGGATCCAAAATAGTCATATGATGATGTCGACAGGAATTCGCAGCTAACGCAATAG-------------G-------------TGGGGGTCACCGTTGTCCAAGTGTGTGT-GCG----GAAGTTGTTGTAAACGGAATCAAGGTCG------GACAT-AT-CT-CATCATA-ATGATTTGCCAT-GCCTTTTTTTTTTTTTA---------CT---TTCCGATCG--AACGATAA--ATCA-TATTGAATATGAGCAGCGAAGGTTT------GTAAT-TTAGATTTGATAAAGTTTTAAA-CAGACGATTGTTCTTTTGAATTTCCTTTCTCTTGTTCTAACCCTTAAAGGGCCGTGGATTGCAGATCGAATCAAATGAAAAGAACGATTG-TGGAG-----AACATGCACA---GAGGAGTTCGTCAGCTA-TA--TAAACATGTAGGAGTTTAA-GCCTCTCCTACATAAATCCCCACACAAACAACTGGTAACTCTGTTTC----AAT-GACAGT--A------TG-TAGAGTTTTTCA--AATTTAATATTTTTATCAATAT-CCTGCTATTTATCGTTTTGTTGGTTTGT-TTTTCATTTTTCGGGGAAGAGCACCCAACACATT--TCCTCTTGCAGCA-TAAG--TTAATTA----A-TT-TATTTT-----AATCTG-GATTTAAGCGCCGGTA-TTGGCAATATTATCAACCCTTTTCCGGTAAACA--TATCCCTC------ACAATATATC---TGGTGAAAG-CTTG-GAGCCTCAAAT-GGAACTGC-ACACAGTAGATTACCGGGCATGGGTCTTTAC---TAATTATTTC-C------CATGGGTAGTAAGTAACTCCCTTTTTT-GGCATTTT----TAG-TGTTGTTCGTCACCTTCGTTTCACG-ACTTTCAG
gi|10 : cagagaatagggcagtgatttggtaccagaattagagctagatgatcactgtgattattatttttatcattgaATTA----A-TTGTG---T-----A----GAGGTTTAA-AGCCGCT-TTTGGCAATAAT-TTAGCCATTTTATGGTGGTTAACTA-----C------ATGAAATAT--GTTCT-----GTATTGAAGGCTTC-AATAGGAGTTtactttgat
gi|11 : gaatagATATT-TCAACTCTTTTCTGGTAGGAAACTA-----T------ATAAAATATCAGTTTTCGAGAATTT-------------T-GGAGCTCTGATGGAATGAA---------ACAG------------------------------------AATA------TCT--TTTTT-GGCA--TT----TAC-AGTCGTTCGTCACCTtccctggaaaaggaagaatagatac
gi|12 : gcgatAGAAAGTGTTGTACCAAAATTGTGAA--TTTCGC-AACGTAAG------AGTTCCGA--CTGGA-CCCAGG-CGGATCCAAAATAATCATATTATGATGTTGA---AAATGTGTAGCAAATTCACTTGTTTG
gi|13 : CAGAGATAGATGTACCAAAATTGTGAA--TTTCAC-AACTCCAG------GGTTCTAACACTATA-T---AG-CGGGTCCGATATAGTTATNCCA
gi|13 : tgcatatttatgaagtgGTTATNCCAAAATTGTGAA--TTTCAC-aaattgtgaatttcac
gi|14 : tgcatatttatgaagtgcagagatagatgtaccaaaattgtgaatttcacaactccagggttctaacactatatagcgggtccgatataATCC--------A-AACGG-TAACTCTAATTCTGCCAAT-GAAAGTGGA------TGGTGCA-TTTTTTAGAAATTTAA-ATTT------AT-TTACTGTTGTTTATC-----------TT-T-TTT--ATCTTC-----AAG-GCAC--A
gi|15 : C--AA---ATTATTTATCTTGCAGCA-TAGG--TTAATTAACTTA-TT-TA---T-----A----T-GGTATAT-CACC-GTA-TTGGCAATAGT-TTAGCTATTTgtt
gi|16 : tAATCC--------A-AACTG-TAACTCTGTTTCT---GTT-GAAAGT--G------TG-TACA-Tacagtg
gi|2 : tgcggtaaaactaatgcCAGAAAGTGTTGTACCAAAATTGTGAA--TTTCGC-AACGTAAG------AGTTCCGA-ACTGGA-CCCAGG-CGGATCCAAAATAATCATATTATGATGTTGA---AAATGTGTAGCAAATTCACTTGTTTGTGTTGCT-CG-------------TAAAAATCACCT--G---GTAGGTATATTGTGCCTAGAAGTTGATG---AC--AATCAA--TCG------TTCAT-AT-CTTCATC-TATATGATTTAC-ATAGCCTTTTTTT------A---------CT---TTC-AATCA--AA-----A--AT-AATATTGAATATTTACC-TG----TTTACACGGGTGGTAT--GATT--GTGAGCTTTTAAAACAGA--A--GTCCTTT-------CCTTTCTCTTGTCTCTACCTTTAA-T--CCGTGGATTGCAGATCGA-TCAACTGAAA-GCAT--TTGGTGCAATTTGTAACATCCA-A---GGGCAGTTCGTCAGCTA-TA--TAAACA-GT-GGA-TTAAAAGCTTC----ATATCAATCC--------A-AATTG-TAACTCTGTTTC----AAT-GACAGT--ACATTTATG-TAGA-TTTTTCA--AATTTAA-ATTTTGATCAATATTCCTGTTGTTTATCG----------TT-TATTTTTATTTTC-----AAA-GCAC--AA---ATTATTCCT-TTGCAGCA-CAA-------------------TA---T-----A----G-GATTT----GCCG-TATTTAGCAATATT-TTAACCCTTTTCTGGTAGACAACTA-----CTGTAACATAAAATGCCAGTTTTTAAGACTTTTG-G-------AAT-AAA------ACAGAATAGAT------ATACAG-----------TA-------T-C------CAT---TAGTA------TC---TTTTT-GGCA-TTTAGTGTAACTGTTGTTCGTTACCTTCGTTTCA-A-ACTTTAAGgt
gi|3 : CAGAAAGTGTTGTACCAAAATTGTGAA--TTTCGC-AACGCAAGCTCAAGGATTCTGA--CTAGG-TCCAGGGCGGATCCAAAATAGTCATGTTATGATTTCGA---AAATGTGTAGCAAATTCACTTCTTTGTGCTGCT-TG-------------TAAAAATCACTG--G---GAGGGTATATTGCGCCTAGAAGTTGATG---AC--AATCAA--TCG------TTCAT-AT-CTTCATC-TATATGATTTGC-ATAGGCTTTTTTT------AAATTTATTTCTACATTC-AATGA--AG-----ATAATCAATATTGAATATT--TA-CA-------A---GGGTGAT-------------AACTTTTAAAACAGA--A--GTCCTTT-------CCTTTTCCTTGTTTC-AACCTTAAAT--CCGTGGATTGCAGATCGA-TCAACTGAAA-GAAT--TTGGTGCAGTTT-TTACATGCA-ACCTGGGCAGTTCGTCAGCTAGTATTTAAACT-GT-GGA-TTAAA-GCTTCTGA-ATACTAATCC--------A-AACTG-TAACTCTGTTTC----AATGGACAGT--A------TG-TAGA-TT---------TTTAA-ATTTTGATCCATA-TCATGTTGTTTAT------------TT-T-ATTTTATTc
gi|4 : atcatttgaCTCTGTTTT----AAT-GACAGT--A------TG-TAGA--TTTTCA--AATTTAA-ATTTGAATC---ATTTTTTTTTTTT--------------TT-T-TTTTTGTTT
gi|4 : -TTTTT-----GTTTAA-ATTCGGATCAAT-TTCCTGTTGTTTATC-----------TT-T-TT--TATCTTC-----AAG-GCCC--AA---GTTCTTCCC-TTGCAGTATTAAGNNNNNNNNN----N-NN-NN---N-----N----N-NNNNNNN-NNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNTAGACAACTC-----T------ATAAAaaattcggatcaatttcctgttgtttatcttttttatcttcaaggcccaagttcttcccttgcagtattaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagacaactctataaataaatacatgtatctcattacatgtaatatcattttggcattttgtgtcgttcgtcacctcttttcagtactttg
gi|4 : ctctgttttaatgacagtatgtagattttcaaatttaaatttgaatcatttttttttttttttAATAAAT------ACATG------------TA-------T-CTCATTACAT--GTAATA------TC---ATTTT-GGCA-TTT----T-G-TGTCGTTCGTCACC-TCTTTTCA-GTACTTTtaaatacatgtatctcattacatgtaatatcattttggcattttgtgtcgttcgtcacctcttttcagtactttg
gi|5 : ctctgttttaatgacagtatgtagattttcaaatttaaatttgaatcattttttttttttttttttttgtttaaattcggatcaatttcctgttgtttatcttttttatcttcaaggcccaagttcttcccttgcagtattaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagacaactctataTTTTTTTTC-----------TT-T-TTTTT-TTTTCCCC--AAG-GTAC--AA---ATTATTCCT-TTGCCGCA-TAAG--TGAATTA----A-TT-GA---TTTTTAA----G-GACTTAG-CGCCA-TATT-GGCAATATT-TCAACCCTTTTCCAGTAGACAACTA-----C------ATAAAATATCAGTTTTTAAGACTTTTG-GGGCCAC-AAT-GGAA-TGAAACAGAATAGAT------GCACAG-------CACATA-------TCC------CAT---TAGTA------TC---TTTTTAGGTA--TT----TAG-TGTTGTTCGTCACC-TCGTTTCA-GAACTTTCAGg
gi|6 : tttatttatctAGAAAGGGTTGTACCAAAATTTTGAA--TTTCGA-AAAGCTAT------GGTTCT-A-ATT------------GAATCCAAAATAGTCATATGACGGTGTAGA---AAATGTGTAGCAAATTCACTTGTTTGTATT-CTACATAAAGATGTGAATTAAAAATCACTG--G---G-CGGTATATTGCGCCAAGAAGTTGATG---AC--AG-------CG------T--ATAATGCTTCATC-TGCATTAATTGC-CTTACC-ATGTTT------A---------CT---TTC-AATTAGGAT-----A--ATCAATATCGAATAtacttt
gi|7 : tatcatttgaaCAGAAAATGCTGTACCAAAATTGTGAA--TTTTGC-AACGCAAG------GGTTCTGA--CT------------GAATCCAAAATAGTCATATACTGATGTCGA---AAATGTGTAGCAAATTCACTTGTTTGTGTTGGT-CG-------------TAAAAATCACCG--G---GAGGGTATATTGCGCCTAGGAGTTGGTG---AC--AATCAA--TCGTTGATATTGAT-AT-CTTCATC-T
gi|8 : ttatttgaAGATCGA-TCAACTGAAA-GAAT--TTGGTGCAAATT-TA-CATGCA-A---GGGCAGTTCGTCAGCTA-TA--GAAACA-GT-GGA-TTAAA-GTTTC----ATACTAATCC--------A-AGCTG-TAACTCTGTTTC----AAT-GACAGT--A------GG-TAGA-TTTT--A-------AA-ATTTTGATCAATA-TCCTGTTTTTCATC-----------TT-T-TCTTTATTTTC-----AA
gi|9 : CTTTA---ATACTAATCA--------A-AACTG-TAATCCTGTTTC----AAT-GACAGT--------------------------AATTTGA-ATTTTGATAAATA-TCCTGTTGTTTATC--------------T-TTTTTATTTTC-----AAG-GTAC--AG------ATTCCT-AGGCAGCA-TAAG--TTAATTG----ATTT-TA---T-----A----G-GATT
Alignments
lowQualScore : 11111111111111111111111111111111111111 111111111111111111111111111111111111111111111111
lowQualScore : 111111 333333333333333 111 4444444444444444444 111111 111 11 11 22222222 1 5555555555555555 111 1 333333333333 22222222222222222222222222222222222222 22222 4444444 1111 2222 1 1 11 1111 11111 1 11 1 1 1 1 4444 22222222 1111 222222222 222222 11 22222222222 22222 1111 1 222222222222222222222222222 1111 11111 333333333333 333333333 333333 222222222222222222222222222222222222222222222222 22222222222 11 1111 1 222
lowQualScore : 0 66 5 666666 999999999999999 1 111 4444444444444444444 555555 6 0 1 444 11 0 11 44444444 8 8 0 8 7 0 9 3 9999999999999999 777 0 0 555555555555 2 3 00000000000000000000000000000000000000 7 77777 3333333 6666 4444 0 0 33 2 3333 3 88888 0 33 0 0 0 0 0000 00000000 5 5 5555 5 000000000 5 4 0 000000 5 3 3 22 0 55555555555 4 4 44444 6 77 3333 3 3 6 99 0 333333333333333333333333333 1111 88888 0 5 111111111111 5 55 11 0 111111111 8 222222 2 000000000000000000000000000000000000000000000000 66666666666 8 88 7777 0 8 0 444
lowQualScore : . .. . ...... ............... . ... ................... ...... . . . ... .. . .. ........ . . . . . . . . ................ ... . . ............ . . ...................................... . ..... ....... .... .... . . .. . .... . ..... . .. . . . . .... ........ . . .... . ......... . . . ...... . . . .. . ........... . . ..... . .. .... . . . .. . ........................... .... ..... . . ............ . .. .. . ......... . ...... . ................................................ ........... . .. .... . . . ...
lowQualScore : 3 99 0 444444 777777777777777 0 777 2222222222222222222 000000 0 8 0 000 00 8 00 88888888 0 0 8 0 0 0 8 2 8888888888888888 555 0 2 888888888888 5 2 33333333333333333333333333333333333333 3 77777 3333333 0000 7777 0 0 88 5 8888 2 55555 0 88 0 0 0 0 8888 77777777 7 7 6666 0 222222222 0 4 1 888888 0 1 1 66 1 66666666666 4 4 33333 7 99 3333 2 3 7 22 7 777777777777777777777777777 0000 00000 8 7 222222222222 6 22 88 8 444444444 0 222222 0 444444444444444444444444444444444444444444444444 00000000000 0 66 0000 8 0 6 000
consensus : CAGAAAGTGTTGTACCAAAATTGTGAA--TTTCGC-AACGCAAG------GGTTCTGA-ACTAGA-CCCAGG-CGGATCCAAAATAGTCATATNATGATGTCGA---AAATGTGTAGCAAATTCACTTGTTTGTGTTGCT-CG-------------TAAAAATCACCG--G---GAGGGTATATTGCGCCTAGAAGTTGATG---AC--AATCAA--TCG------TTCAT-AT-CTTCATC-TATATGATTTGC-ATAGCCTTTTTTT------A---------CT---TTC-AATCA--AA-----A--ATCAATATTGAATATT-GCA-CG----TTTA---GGGTGAT-T--GATT--GTGAACTTTTAAAACAGA--A--GTCCTTT-------CCTTTCTCTTGTT-TC-ACCCTTAAAT--CCGTGGATTGCAGATCGA-TCAACTGAAA-GAAT--TTGGTGCAGTTT-TAACATGCA-A---GGGCAGTTCGTCAGCTA-TA--TAAACA-GT-GGA-TTAAA-GCTTCT---ATACTAATCC--------A-AACTG-TAACTCTGTTTC----AAT-GACAGT--A------TG-TAGA-TTTTTCA--AATTTAA-ATTTTGATCAATATTCCTGTTGTTTATC-----------TT-T-TTTTTATTTTC-----AAG-GCAC--AA---ATTATTCCT-TTGCAGCA-TAAG--TTAATTA----A-TT-TA---T-----A----G-GATTT-AGCGCCGGTATTTGGCAATATT-TCAACCCTTTTCCGGTAGACAACTA-----C------ATAAAATATCAGTTTTTGAGANTTTTG-GGGCCTC-AAT-GGAGCTGCGACGGAATAGAT------GCACGG-------C---TA-------T-C------CAT--GTAGTA------TC---TTTTT-GGCA-TTT----TAG-TGTCGTTCGTCACCTTCGTTTCA-G-ACTTTCAG
Reference ( family-1573 ) : CAGAAAGTGTTGTACCAAAATTGTGAA--TTTCGC-AACGCAAG------GGTTCTGA-ACTAGA-CCCAGG-CGGATCCAAAATAGTCATATNATGATGTCGA---AAATGTGTAGCAAATTCACTTGTTTGTGTTGCT-CG-------------TAAAAATCACCG--G---GAGGGTATATTGCGCCTAGAAGTTGATG---AC--AATCAA--TCG------TTCAT-AT-CTTCATC-TATATGATTTGC-ATAGCCTTTTTTT------A---------CT---TTC-AATCA--AA-----A--ATCAATATTGAATATT-GCA-CG----TTTA---GGGTGAT-T--GATT--GTGAACTTTTAAAACAGA--A--GTCCTTT-------CCTTTCTCTTGTT-TC-ACCCTTAAAT--CCGTGGATTGCAGATCGA-TCAACTGAAA-GAAT--TTGGTGCAGTTT-TAACATGCA-A---GGGCAGTTCGTCAGCTA-TA--TAAACA-GT-GGA-TTAAA-GCTTCT---ATACTAATCC--------A-AACTG-TAACTCTGTTTC----AAT-GACAGT--A------TG-TAGA-TTTTTCA--AATTTAA-ATTTTGATCAATATTCCTGTTGTTTATC-----------TT-T-TTTTTATTTTC-----AAG-GCAC--AA---ATTATTCCT-TTGCAGCA-TAAG--TTAATTA----A-TT-TA---T-----A----G-GATTT-ANCGCCGGTATTTGGCAATATT-TCAACCCTTTTCCGGTAGACAACTA-----C------ATAAAATATCAGTTTTTGAGANTTTTG-GGGCCTC-AAT-GGAGCTGCGACGGAATAGAT------GCACGG-------C---TA-------T-C------CAT--GTAGTA------TC---TTTTT-GGCA-TTT----TAG-TGTCGTTCGTCACCTTCGTTTCA-G-ACTTTCAG
gi|1 : CAGAAAGCGTTGT-CCAAAATTGTGAAGTTTCCGCGAACGCAAA------GGTT-TGA--CTAGATCCCAGGGCGGATCCAAAATAGTCATATGATGATGTCGACAGGAATTCGCAGCTAACGCAATAG-------------G-------------TGGGGGTCACCGTTGTCCAAGTGTGTGT-GCG----GAAGTTGTTGTAAACGGAATCAAGGTCG------GACAT-AT-CT-CATCATA-ATGATTTGCCAT-GCCTTTTTTTTTTTTTA---------CT---TTCCGATCG--AACGATAA--ATCA-TATTGAATATGAGCAGCGAAGGTTT------GTAAT-TTAGATTTGATAAAGTTTTAAA-CAGACGATTGTTCTTTTGAATTTCCTTTCTCTTGTTCTA-ACCCTTAAAGGGCCGTGGATTGCAGATCGAATCAAATGAAAAGAACGATTG-TGGAG-----AACATGCACA---GAGGAGTTCGTCAGCTA-TA--TAAACATGTAGGAGTTTAA-GCCTCTCCTACATAAATCCCCACACAAACAACTGGTAACTCTGTTTC----AAT-GACAGT--A------TG-TAGAGTTTTTCA--AATTTAATATTTTTATCAATAT-CCTGCTATTTATCGTTTTGTTGGTTTGT-TTTTCATTTTTCGGGGAAGAGCACCCAACACATT--TCCTCTTGCAGCA-TAAG--TTAATTA----A-TT-TATTTT-----AATCTG-GATTTAAGCGCCGGTA-TTGGCAATATTATCAACCCTTTTCCGGTAAACA--TATCCCTC------ACAATATATC---TGGTGAAAG-CTTG-GAGCCTCAAAT-GGAACTGC-ACACAGTAGATTACCGGGCATGGGTCTTTAC---TAATTATTTC-C------CATGGGTAGTAAGTAACTCCCTTTTTT-GGCATTTT----TAG-TGTTGTTCGTCACCTTCGTTTCACG-ACTTTCAG
gi|10 : cagagaatagggcagtgatttggtaccagaattagagctagatgatcactgtgattattatttttatcattgaATTA----A-TTGTG---T-----A----GAGGTTT-AAAGCCGCT-TTTGGCAATAAT-TTAGCCATTTTATGGTGGTTAACTA-----C------ATGAAATAT--GTTCT-----GTATTGAAGGCTTC-AATAGGAGTTtactttgat
gi|11 : gaatagATATT-TCAACTCTTTTCTGGTAGGAAACTA-----T------ATAAAATATCAGTTTTCGAGAATTT-------------T-GGAGCTCTGATGGAATGAA---------ACAG------------------------------------AATA------TCT--TTTTT-GGCA--TT----TAC-AGTCGTTCGTCACCTtccctggaaaaggaagaatagatac
gi|12 : gcgatAGAAAGTGTTGTACCAAAATTGTGAA--TTTCGC-AACGTAAG------AGTTCCGA--CTGGA-CCCAGG-CGGATCCAAAATAATCATATTATGATGTTGA---AAATGTGTAGCAAATTCACTTGTTTG
gi|13 : CAGAGATAGATGTACCAAAATTGTGAA--TTTCAC-AACTCCAG------GGTTCTAACACTATA-T---AG-CGGGTCCGATATAGTTATNCCA
gi|13 : tgcatatttatgaagtgGTTATNCCAAAATTGTGAA--TTTCAC-aaattgtgaatttcac
gi|14 : tgcatatttatgaagtgcagagatagatgtaccaaaattgtgaatttcacaactccagggttctaacactatatagcgggtccgatataATCC--------A-AACGG-TAACTCTAATTCTGCCAAT-GAAAGTGGA------TGGTGCA-TTTTTTAGAAATTTAA-ATTT------AT-TTACTGTTGTTTATC-----------TT-T-TTT--ATCTTC-----AAG-GCAC--A
gi|15 : C--AA---ATTATTTATCTTGCAGCA-TAGG--TTAATTAACTTA-TT-TA---T-----A----T-GGTAT-ATCACC-GTA-TTGGCAATAGT-TTAGCTATTTgtt
gi|16 : tAATCC--------A-AACTG-TAACTCTGTTTCT---GTT-GAAAGT--G------TG-TACA-Tacagtg
gi|2 : tgcggtaaaactaatgcCAGAAAGTGTTGTACCAAAATTGTGAA--TTTCGC-AACGTAAG------AGTTCCGA-ACTGGA-CCCAGG-CGGATCCAAAATAATCATATTATGATGTTGA---AAATGTGTAGCAAATTCACTTGTTTGTGTTGCT-CG-------------TAAAAATCACCT--G---GTAGGTATATTGTGCCTAGAAGTTGATG---AC--AATCAA--TCG------TTCAT-AT-CTTCATC-TATATGATTTAC-ATAGCCTTTTTTT------A---------CT---TTC-AATCA--AA-----A--AT-AATATTGAATATTTACC-TG----TTTACACGGGTGGTAT--GATT--GTGAGCTTTTAAAACAGA--A--GTCCTTT-------CCTTTCTCTTGTC-TCTACCTTTAA-T--CCGTGGATTGCAGATCGA-TCAACTGAAA-GCAT--TTGGTGCAATTTGTAACATCCA-A---GGGCAGTTCGTCAGCTA-TA--TAAACA-GT-GGA-TTAAAAGCTTC----ATATCAATCC--------A-AATTG-TAACTCTGTTTC----AAT-GACAGT--ACATTTATG-TAGA-TTTTTCA--AATTTAA-ATTTTGATCAATATTCCTGTTGTTTATCG----------TT-TATTTTTATTTTC-----AAA-GCAC--AA---ATTATTCCT-TTGCAGCA-CAA-------------------TA---T-----A----G-GATTT----GCCG-TATTTAGCAATATT-TTAACCCTTTTCTGGTAGACAACTA-----CTGTAACATAAAATGCCAGTTTTTAAGACTTTTG-G-------AAT-AAA------ACAGAATAGAT------ATACAG-----------TA-------T-C------CAT---TAGTA------TC---TTTTT-GGCA-TTTAGTGTAACTGTTGTTCGTTACCTTCGTTTCA-A-ACTTTAAGgt
gi|3 : CAGAAAGTGTTGTACCAAAATTGTGAA--TTTCGC-AACGCAAGCTCAAGGATTCTGA--CTAGG-TCCAGGGCGGATCCAAAATAGTCATGTTATGATTTCGA---AAATGTGTAGCAAATTCACTTCTTTGTGCTGCT-TG-------------TAAAAATCACTG--G---GAGGGTATATTGCGCCTAGAAGTTGATG---AC--AATCAA--TCG------TTCAT-AT-CTTCATC-TATATGATTTGC-ATAGGCTTTTTTT------AAATTTATTTCTACATTC-AATGA--AG-----ATAATCAATATTGAATATT--TA-CA-------A---GGGTGAT-------------AACTTTTAAAACAGA--A--GTCCTTT-------CCTTTTCCTTGTT-TC-AACCTTAAAT--CCGTGGATTGCAGATCGA-TCAACTGAAA-GAAT--TTGGTGCAGTTT-TTACATGCA-ACCTGGGCAGTTCGTCAGCTAGTATTTAAACT-GT-GGA-TTAAA-GCTTCTGA-ATACTAATCC--------A-AACTG-TAACTCTGTTTC----AATGGACAGT--A------TG-TAGA-TT---------TTTAA-ATTTTGATCCATA-TCATGTTGTTTAT------------TT-T-ATTTTATTc
gi|4 : atcatttgaCTCTGTTTT----AAT-GACAGT--A------TG-TAGA--TTTTCA--AATTTAA-ATTTGAATC---ATTTTTTTTTTTT--------------TT-T-TTTTTGTTT
gi|4 : -TTTTT-----GTTTAA-ATTCGGATCAAT-TTCCTGTTGTTTATC-----------TT-T-TT--TATCTTC-----AAG-GCCC--AA---GTTCTTCCC-TTGCAGTATTAAGNNNNNNNNN----N-NN-NN---N-----N----N-NNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNTAGACAACTC-----T------ATAAAaaattcggatcaatttcctgttgtttatcttttttatcttcaaggcccaagttcttcccttgcagtattaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagacaactctataaataaatacatgtatctcattacatgtaatatcattttggcattttgtgtcgttcgtcacctcttttcagtactttg
gi|4 : ctctgttttaatgacagtatgtagattttcaaatttaaatttgaatcatttttttttttttttAATAAAT------ACATG------------TA-------T-CTCATTACAT--GTAATA------TC---ATTTT-GGCA-TTT----T-G-TGTCGTTCGTCACC-TCTTTTCA-GTACTTTtaaatacatgtatctcattacatgtaatatcattttggcattttgtgtcgttcgtcacctcttttcagtactttg
gi|5 : ctctgttttaatgacagtatgtagattttcaaatttaaatttgaatcattttttttttttttttttttgtttaaattcggatcaatttcctgttgtttatcttttttatcttcaaggcccaagttcttcccttgcagtattaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagacaactctataTTTTTTTTC-----------TT-T-TTTTT-TTTTCCCC--AAG-GTAC--AA---ATTATTCCT-TTGCCGCA-TAAG--TGAATTA----A-TT-GA---TTTTTAA----G-GACTT-AGCGCCA-TATT-GGCAATATT-TCAACCCTTTTCCAGTAGACAACTA-----C------ATAAAATATCAGTTTTTAAGACTTTTG-GGGCCAC-AAT-GGAA-TGAAACAGAATAGAT------GCACAG-------CACATA-------TCC------CAT---TAGTA------TC---TTTTTAGGTA--TT----TAG-TGTTGTTCGTCACC-TCGTTTCA-GAACTTTCAGg
gi|6 : tttatttatctAGAAAGGGTTGTACCAAAATTTTGAA--TTTCGA-AAAGCTAT------GGTTCT-A-ATT------------GAATCCAAAATAGTCATATGACGGTGTAGA---AAATGTGTAGCAAATTCACTTGTTTGTATT-CTACATAAAGATGTGAATTAAAAATCACTG--G---G-CGGTATATTGCGCCAAGAAGTTGATG---AC--AG-------CG------T--ATAATGCTTCATC-TGCATTAATTGC-CTTACC-ATGTTT------A---------CT---TTC-AATTAGGAT-----A--ATCAATATCGAATAtacttt
gi|7 : tatcatttgaaCAGAAAATGCTGTACCAAAATTGTGAA--TTTTGC-AACGCAAG------GGTTCTGA--CT------------GAATCCAAAATAGTCATATACTGATGTCGA---AAATGTGTAGCAAATTCACTTGTTTGTGTTGGT-CG-------------TAAAAATCACCG--G---GAGGGTATATTGCGCCTAGGAGTTGGTG---AC--AATCAA--TCGTTGATATTGAT-AT-CTTCATC-T
gi|8 : ttatttgaAGATCGA-TCAACTGAAA-GAAT--TTGGTGCAAATT-TA-CATGCA-A---GGGCAGTTCGTCAGCTA-TA--GAAACA-GT-GGA-TTAAA-GTTTC----ATACTAATCC--------A-AGCTG-TAACTCTGTTTC----AAT-GACAGT--A------GG-TAGA-TTTT--A-------AA-ATTTTGATCAATA-TCCTGTTTTTCATC-----------TT-T-TCTTTATTTTC-----AA
gi|9 : CTTTA---ATACTAATCA--------A-AACTG-TAATCCTGTTTC----AAT-GACAGT--------------------------AATTTGA-ATTTTGATAAATA-TCCTGTTGTTTATC--------------T-TTTTTATTTTC-----AAG-GTAC--AG------ATTCCT-AGGCAGCA-TAAG--TTAATTG----ATTT-TA---T-----A----G-GATT
Alignments
lowQualScore : 11111111111111111111111111111111111111 111111111111111111111111111111111111111111111111
lowQualScore : 111111 333333333333333 111 4444444444444444444 111111 111 11 11 22222222 1 5555555555555555 111 1 333333333333 22222222222222222222222222222222222222 22222 4444444 1111 2222 1 1 11 1111 11111 1 11 1 1 1 1 4444 22222222 1111 222222222 222222 11 22222222222 22222 1111 1 222222222222222222222222222 1111 11111 333333333333 333333333 333333 222222222222222222222222222222222222222222222222 22222222222 11 1111 1 222
lowQualScore : 0 66 5 666666 999999999999999 1 111 4444444444444444444 555555 6 0 1 444 11 0 11 44444444 8 8 0 8 7 0 9 3 9999999999999999 777 0 0 555555555555 2 3 00000000000000000000000000000000000000 7 77777 3333333 6666 4444 0 0 33 2 3333 3 88888 0 33 0 0 0 0 0000 00000000 5 5 5555 5 000000000 5 4 0 000000 5 3 3 22 0 55555555555 4 4 44444 6 77 3333 3 3 6 99 0 333333333333333333333333333 0000 88888 0 5 111111111111 5 55 11 0 111111111 8 222222 2 000000000000000000000000000000000000000000000000 66666666666 8 88 7777 0 8 0 444
lowQualScore : . .. . ...... ............... . ... ................... ...... . . . ... .. . .. ........ . . . . . . . . ................ ... . . ............ . . ...................................... . ..... ....... .... .... . . .. . .... . ..... . .. . . . . .... ........ . . .... . ......... . . . ...... . . . .. . ........... . . ..... . .. .... . . . .. . ........................... .... ..... . . ............ . .. .. . ......... . ...... . ................................................ ........... . .. .... . . . ...
lowQualScore : 3 99 0 444444 777777777777777 0 777 2222222222222222222 000000 0 8 0 000 00 8 00 88888888 0 0 8 0 0 0 8 2 8888888888888888 555 0 2 888888888888 5 2 33333333333333333333333333333333333333 3 77777 3333333 0000 7777 0 0 88 5 8888 2 55555 0 88 0 0 0 0 8888 77777777 7 7 6666 0 222222222 0 4 1 888888 0 1 1 66 1 66666666666 4 4 33333 7 99 3333 2 3 7 22 7 777777777777777777777777777 5555 00000 8 7 222222222222 6 22 88 8 444444444 0 222222 0 444444444444444444444444444444444444444444444444 00000000000 0 66 0000 8 0 6 000
consensus : CAGAAAGTGTTGTACCAAAATTGTGAA--TTTCGC-AACGCAAG------GGTTCTGA-ACTAGA-CCCAGG-CGGATCCAAAATAGTCATATNATGATGTCGA---AAATGTGTAGCAAATTCACTTGTTTGTGTTGCT-CG-------------TAAAAATCACCG--G---GAGGGTATATTGCGCCTAGAAGTTGATG---AC--AATCAA--TCG------TTCAT-AT-CTTCATC-TATATGATTTGC-ATAGCCTTTTTTT------A---------CT---TTC-AATCA--AA-----A--ATCAATATTGAATATT-GCA-CG----TTTA---GGGTGAT-T--GATT--GTGAACTTTTAAAACAGA--A--GTCCTTT-------CCTTTCTCTTGTT-TC-ACCCTTAAAT--CCGTGGATTGCAGATCGA-TCAACTGAAA-GAAT--TTGGTGCAGTTT-TAACATGCA-A---GGGCAGTTCGTCAGCTA-TA--TAAACA-GT-GGA-TTAAA-GCTTCT---ATACTAATCC--------A-AACTG-TAACTCTGTTTC----AAT-GACAGT--A------TG-TAGA-TTTTTCA--AATTTAA-ATTTTGATCAATATTCCTGTTGTTTATC-----------TT-T-TTTTTATTTTC-----AAG-GCAC--AA---ATTATTCCT-TTGCAGCA-TAAG--TTAATTA----A-TT-TA---T-----A----G-GATTT-AGCGCCGGTATTTGGCAATATT-TCAACCCTTTTCCGGTAGACAACTA-----C------ATAAAATATCAGTTTTTGAGANTTTTG-GGGCCTC-AAT-GGAGCTGCGACGGAATAGAT------GCACGG-------C---TA-------T-C------CAT--GTAGTA------TC---TTTTT-GGCA-TTT----TAG-TGTCGTTCGTCACCTTCGTTTCA-G-ACTTTCAG
Reference ( family-1573 ) : CAGAAAGTGTTGTACCAAAATTGTGAA--TTTCGC-AACGCAAG------GGTTCTGA-ACTAGA-CCCAGG-CGGATCCAAAATAGTCATATNATGATGTCGA---AAATGTGTAGCAAATTCACTTGTTTGTGTTGCT-CG-------------TAAAAATCACCG--G---GAGGGTATATTGCGCCTAGAAGTTGATG---AC--AATCAA--TCG------TTCAT-AT-CTTCATC-TATATGATTTGC-ATAGCCTTTTTTT------A---------CT---TTC-AATCA--AA-----A--ATCAATATTGAATATT-GCA-CG----TTTA---GGGTGAT-T--GATT--GTGAACTTTTAAAACAGA--A--GTCCTTT-------CCTTTCTCTTGTT-TC-ACCCTTAAAT--CCGTGGATTGCAGATCGA-TCAACTGAAA-GAAT--TTGGTGCAGTTT-TAACATGCA-A---GGGCAGTTCGTCAGCTA-TA--TAAACA-GT-GGA-TTAAA-GCTTCT---ATACTAATCC--------A-AACTG-TAACTCTGTTTC----AAT-GACAGT--A------TG-TAGA-TTTTTCA--AATTTAA-ATTTTGATCAATATTCCTGTTGTTTATC-----------TT-T-TTTTTATTTTC-----AAG-GCAC--AA---ATTATTCCT-TTGCAGCA-TAAG--TTAATTA----A-TT-TA---T-----A----G-GATTT-AGCGCCGGTATTTGGCAATATT-TCAACCCTTTTCCGGTAGACAACTA-----C------ATAAAATATCAGTTTTTGAGANTTTTG-GGGCCTC-AAT-GGAGCTGCGACGGAATAGAT------GCACGG-------C---TA-------T-C------CAT--GTAGTA------TC---TTTTT-GGCA-TTT----TAG-TGTCGTTCGTCACCTTCGTTTCA-G-ACTTTCAG
gi|1 : CAGAAAGCGTTGT-CCAAAATTGTGAAGTTTCCGCGAACGCAAA------GGTT-TGA--CTAGATCCCAGGGCGGATCCAAAATAGTCATATGATGATGTCGACAGGAATTCGCAGCTAACGCAATAG-------------G-------------TGGGGGTCACCGTTGTCCAAGTGTGTGT-GCG----GAAGTTGTTGTAAACGGAATCAAGGTCG------GACAT-AT-CT-CATCATA-ATGATTTGCCAT-GCCTTTTTTTTTTTTTA---------CT---TTCCGATCG--AACGATAA--ATCA-TATTGAATATGAGCAGCGAAGGTTT------GTAAT-TTAGATTTGATAAAGTTTTAAA-CAGACGATTGTTCTTTTGAATTTCCTTTCTCTTGTTCTA-ACCCTTAAAGGGCCGTGGATTGCAGATCGAATCAAATGAAAAGAACGATTG-TGGAG-----AACATGCACA---GAGGAGTTCGTCAGCTA-TA--TAAACATGTAGGAGTTTAA-GCCTCTCCTACATAAATCCCCACACAAACAACTGGTAACTCTGTTTC----AAT-GACAGT--A------TG-TAGAGTTTTTCA--AATTTAATATTTTTATCAATAT-CCTGCTATTTATCGTTTTGTTGGTTTGT-TTTTCATTTTTCGGGGAAGAGCACCCAACACATT--TCCTCTTGCAGCA-TAAG--TTAATTA----A-TT-TATTTT-----AATCTG-GATTTAAGCGCCGGTA-TTGGCAATATTATCAACCCTTTTCCGGTAAACA--TATCCCTC------ACAATATATC---TGGTGAAAG-CTTG-GAGCCTCAAAT-GGAACTGC-ACACAGTAGATTACCGGGCATGGGTCTTTAC---TAATTATTTC-C------CATGGGTAGTAAGTAACTCCCTTTTTT-GGCATTTT----TAG-TGTTGTTCGTCACCTTCGTTTCACG-ACTTTCAG
gi|10 : cagagaatagggcagtgatttggtaccagaattagagctagatgatcactgtgattattatttttatcattgaATTA----A-TTGTG---T-----A----GAGGTTT-AAAGCCGCT-TTTGGCAATAAT-TTAGCCATTTTATGGTGGTTAACTA-----C------ATGAAATAT--GTTCT-----GTATTGAAGGCTTC-AATAGGAGTTtactttgat
gi|11 : gaatagATATT-TCAACTCTTTTCTGGTAGGAAACTA-----T------ATAAAATATCAGTTTTCGAGAATTT-------------T-GGAGCTCTGATGGAATGAA---------ACAG------------------------------------AATA------TCT--TTTTT-GGCA--TT----TAC-AGTCGTTCGTCACCTtccctggaaaaggaagaatagatac
gi|12 : gcgatAGAAAGTGTTGTACCAAAATTGTGAA--TTTCGC-AACGTAAG------AGTTCCGA--CTGGA-CCCAGG-CGGATCCAAAATAATCATATTATGATGTTGA---AAATGTGTAGCAAATTCACTTGTTTG
gi|13 : CAGAGATAGATGTACCAAAATTGTGAA--TTTCAC-AACTCCAG------GGTTCTAACACTATA-T---AG-CGGGTCCGATATAGTTATNCCA
gi|13 : tgcatatttatgaagtgGTTATNCCAAAATTGTGAA--TTTCAC-aaattgtgaatttcac
gi|14 : tgcatatttatgaagtgcagagatagatgtaccaaaattgtgaatttcacaactccagggttctaacactatatagcgggtccgatataATCC--------A-AACGG-TAACTCTAATTCTGCCAAT-GAAAGTGGA------TGGTGCA-TTTTTTAGAAATTTAA-ATTT------AT-TTACTGTTGTTTATC-----------TT-T-TTT--ATCTTC-----AAG-GCAC--A
gi|15 : C--AA---ATTATTTATCTTGCAGCA-TAGG--TTAATTAACTTA-TT-TA---T-----A----T-GGTAT-ATCACC-GTA-TTGGCAATAGT-TTAGCTATTTgtt
gi|16 : tAATCC--------A-AACTG-TAACTCTGTTTCT---GTT-GAAAGT--G------TG-TACA-Tacagtg
gi|2 : tgcggtaaaactaatgcCAGAAAGTGTTGTACCAAAATTGTGAA--TTTCGC-AACGTAAG------AGTTCCGA-ACTGGA-CCCAGG-CGGATCCAAAATAATCATATTATGATGTTGA---AAATGTGTAGCAAATTCACTTGTTTGTGTTGCT-CG-------------TAAAAATCACCT--G---GTAGGTATATTGTGCCTAGAAGTTGATG---AC--AATCAA--TCG------TTCAT-AT-CTTCATC-TATATGATTTAC-ATAGCCTTTTTTT------A---------CT---TTC-AATCA--AA-----A--AT-AATATTGAATATTTACC-TG----TTTACACGGGTGGTAT--GATT--GTGAGCTTTTAAAACAGA--A--GTCCTTT-------CCTTTCTCTTGTC-TCTACCTTTAA-T--CCGTGGATTGCAGATCGA-TCAACTGAAA-GCAT--TTGGTGCAATTTGTAACATCCA-A---GGGCAGTTCGTCAGCTA-TA--TAAACA-GT-GGA-TTAAAAGCTTC----ATATCAATCC--------A-AATTG-TAACTCTGTTTC----AAT-GACAGT--ACATTTATG-TAGA-TTTTTCA--AATTTAA-ATTTTGATCAATATTCCTGTTGTTTATCG----------TT-TATTTTTATTTTC-----AAA-GCAC--AA---ATTATTCCT-TTGCAGCA-CAA-------------------TA---T-----A----G-GATTT----GCCG-TATTTAGCAATATT-TTAACCCTTTTCTGGTAGACAACTA-----CTGTAACATAAAATGCCAGTTTTTAAGACTTTTG-G-------AAT-AAA------ACAGAATAGAT------ATACAG-----------TA-------T-C------CAT---TAGTA------TC---TTTTT-GGCA-TTTAGTGTAACTGTTGTTCGTTACCTTCGTTTCA-A-ACTTTAAGgt
gi|3 : CAGAAAGTGTTGTACCAAAATTGTGAA--TTTCGC-AACGCAAGCTCAAGGATTCTGA--CTAGG-TCCAGGGCGGATCCAAAATAGTCATGTTATGATTTCGA---AAATGTGTAGCAAATTCACTTCTTTGTGCTGCT-TG-------------TAAAAATCACTG--G---GAGGGTATATTGCGCCTAGAAGTTGATG---AC--AATCAA--TCG------TTCAT-AT-CTTCATC-TATATGATTTGC-ATAGGCTTTTTTT------AAATTTATTTCTACATTC-AATGA--AG-----ATAATCAATATTGAATATT--TA-CA-------A---GGGTGAT-------------AACTTTTAAAACAGA--A--GTCCTTT-------CCTTTTCCTTGTT-TC-AACCTTAAAT--CCGTGGATTGCAGATCGA-TCAACTGAAA-GAAT--TTGGTGCAGTTT-TTACATGCA-ACCTGGGCAGTTCGTCAGCTAGTATTTAAACT-GT-GGA-TTAAA-GCTTCTGA-ATACTAATCC--------A-AACTG-TAACTCTGTTTC----AATGGACAGT--A------TG-TAGA-TT---------TTTAA-ATTTTGATCCATA-TCATGTTGTTTAT------------TT-T-ATTTTATTc
gi|4 : atcatttgaCTCTGTTTT----AAT-GACAGT--A------TG-TAGA--TTTTCA--AATTTAA-ATTTGAATC---ATTTTTTTTTTTT--------------TT-T-TTTTTGTTT
gi|4 : -TTTTT-----GTTTAA-ATTCGGATCAAT-TTCCTGTTGTTTATC-----------TT-T-TT--TATCTTC-----AAG-GCCC--AA---GTTCTTCCC-TTGCAGTATTAAGNNNNNNNNN----N-NN-NN---N-----N----N-NNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNTAGACAACTC-----T------ATAAAaaattcggatcaatttcctgttgtttatcttttttatcttcaaggcccaagttcttcccttgcagtattaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagacaactctataaataaatacatgtatctcattacatgtaatatcattttggcattttgtgtcgttcgtcacctcttttcagtactttg
gi|4 : ctctgttttaatgacagtatgtagattttcaaatttaaatttgaatcatttttttttttttttAATAAAT------ACATG------------TA-------T-CTCATTACAT--GTAATA------TC---ATTTT-GGCA-TTT----T-G-TGTCGTTCGTCACC-TCTTTTCA-GTACTTTtaaatacatgtatctcattacatgtaatatcattttggcattttgtgtcgttcgtcacctcttttcagtactttg
gi|5 : ctctgttttaatgacagtatgtagattttcaaatttaaatttgaatcattttttttttttttttttttgtttaaattcggatcaatttcctgttgtttatcttttttatcttcaaggcccaagttcttcccttgcagtattaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagacaactctataTTTTTTTTC-----------TT-T-TTTTT-TTTTCCCC--AAG-GTAC--AA---ATTATTCCT-TTGCCGCA-TAAG--TGAATTA----A-TT-GA---TTTTTAA----G-GACTT-AGCGCCA-TATT-GGCAATATT-TCAACCCTTTTCCAGTAGACAACTA-----C------ATAAAATATCAGTTTTTAAGACTTTTG-GGGCCAC-AAT-GGAA-TGAAACAGAATAGAT------GCACAG-------CACATA-------TCC------CAT---TAGTA------TC---TTTTTAGGTA--TT----TAG-TGTTGTTCGTCACC-TCGTTTCA-GAACTTTCAGg
gi|6 : tttatttatctAGAAAGGGTTGTACCAAAATTTTGAA--TTTCGA-AAAGCTAT------GGTTCT-A-ATT------------GAATCCAAAATAGTCATATGACGGTGTAGA---AAATGTGTAGCAAATTCACTTGTTTGTATT-CTACATAAAGATGTGAATTAAAAATCACTG--G---G-CGGTATATTGCGCCAAGAAGTTGATG---AC--AG-------CG------T--ATAATGCTTCATC-TGCATTAATTGC-CTTACC-ATGTTT------A---------CT---TTC-AATTAGGAT-----A--ATCAATATCGAATAtacttt
gi|7 : tatcatttgaaCAGAAAATGCTGTACCAAAATTGTGAA--TTTTGC-AACGCAAG------GGTTCTGA--CT------------GAATCCAAAATAGTCATATACTGATGTCGA---AAATGTGTAGCAAATTCACTTGTTTGTGTTGGT-CG-------------TAAAAATCACCG--G---GAGGGTATATTGCGCCTAGGAGTTGGTG---AC--AATCAA--TCGTTGATATTGAT-AT-CTTCATC-T
gi|8 : ttatttgaAGATCGA-TCAACTGAAA-GAAT--TTGGTGCAAATT-TA-CATGCA-A---GGGCAGTTCGTCAGCTA-TA--GAAACA-GT-GGA-TTAAA-GTTTC----ATACTAATCC--------A-AGCTG-TAACTCTGTTTC----AAT-GACAGT--A------GG-TAGA-TTTT--A-------AA-ATTTTGATCAATA-TCCTGTTTTTCATC-----------TT-T-TCTTTATTTTC-----AA
gi|9 : CTTTA---ATACTAATCA--------A-AACTG-TAATCCTGTTTC----AAT-GACAGT--------------------------AATTTGA-ATTTTGATAAATA-TCCTGTTGTTTATC--------------T-TTTTTATTTTC-----AAG-GTAC--AG------ATTCCT-AGGCAGCA-TAAG--TTAATTG----ATTT-TA---T-----A----G-GATT
blockSeqs : . . CTCAAG ACTGGACCCAGG T . CTACATAAAGATGTGAAT G T T . . . TTGATATT A G . T . A T AAATTTATTT ACA . AGATA C A TACCTGTTTACACGGGTGGTATGATTGTG A A . TCT AT . . . G TTTG A ACCT G TT . . . A TGA . . . TGCC G ACATTTA G . TTAGAA . T A AT G . A CCC . . A A C T NN ATTGATTTTTAAG AAA NNNNN . CTGTAAC A CG GT AAGGCTTC A GCTCTG G TACATGTATCTCATTACATG TCT A T AGTG C T GT
blockSeqs : . . . CTAGGTCCAGGG C . GCTCG G A T . . . TT . . . T . A T A . . GGATA C A TACAAGGGTGAT A A . TC T . . . G TTT A A . . . . . . A . . . T . GGA . . TCAA . T C AT . . . . . . A A . . . ACTTATTTATAT ATC GCTT . C A TA AT GGGCCAC . ATGAA A TGCACAGCACATATCCCAT TC . T . . T GA
blockSeqs : . . . CTGGACCCAGG T . GCTTG G A A . . . TT . . . C . T . A . . AAA . A . . . G ATT . A . . . . . . . . . . . . G . . TCAA . G A T . . . . . . G C . . . ATTGTGTAGA NNN GTAT . T A TA CT G . . A TATACAGTATCCAT TC . . . . . A
blockSeqs : . . . CACTATATAG T . GGTCG G . T . . . T . . . . . . . . . A . . T . G A A . . . . . . A A . . . ATTTTATAG AGC ATAT . T . . CT . . ACAG TC . . . . .
blockSeqs : . . . ATT G . . . . . . A . . A . T A T . . . . . . . A . . . NNNNNNNN . GTA . C
blockSeqs : . . . CT A . . . . . A . . A . T . A . . . . . TATAG .
blockSeqs : . . . . . . . . . . . A . . .
blockSeqs : . . . .
blockSeqCons : ** CTGACCCAGG***** *** GCTCG************** G***** *** ** ** **** ******** TA**** A* *********** ***** ** A*** ATTTTATAG****************** ANC* C*********** NT G******** TGCACAGTATCCAT********************************** TC********* **
originalCons : CAGAAAGTGTTGTACCAAAATTGTGAA--TTTCGC-AACGCAAG------GGTTCTGA-ACTAGA-CCCAGG-CGGATCCAAAATAGTCATATNATGATGTCGA---AAATGTGTAGCAAATTCACTTGTTTGTGTTGCT-CG-------------TAAAAATCACCG--G---GAGGGTATATTGCGCCTAGAAGTTGATG---AC--AATCAA--TCG------TTCAT-AT-CTTCATC-TATATGATTTGC-ATAGCCTTTTTTT------A---------CT---TTC-AATCA--AA-----A--ATCAATATTGAATATT-GCA-CG----TTTA---GGGTGAT-T--GATT--GTGAACTTTTAAAACAGA--A--GTCCTTT-------CCTTTCTCTTGTT-TC-ACCCTTAAAT--CCGTGGATTGCAGATCGA-TCAACTGAAA-GAAT--TTGGTGCAGTTT-TAACATGCA-A---GGGCAGTTCGTCAGCTA-TA--TAAACA-GT-GGA-TTAAA-GCTTCT---ATACTAATCC--------A-AACTG-TAACTCTGTTTC----AAT-GACAGT--A------TG-TAGA-TTTTTCA--AATTTAA-ATTTTGATCAATATTCCTGTTGTTTATC-----------TT-T-TTTTTATTTTC-----AAG-GCAC--AA---ATTATTCCT-TTGCAGCA-TAAG--TTAATTA----A-TT-TA---T-----A----G-GATTT-AGCGCCGGTATTTGGCAATATT-TCAACCCTTTTCCGGTAGACAACTA-----C------ATAAAATATCAGTTTTTGAGANTTTTG-GGGCCTC-AAT-GGAGCTGCGACGGAATAGAT------GCACGG-------C---TA-------T-C------CAT--GTAGTA------TC---TTTTT-GGCA-TTT----TAG-TGTCGTTCGTCACCTTCGTTTCA-G-ACTTTCAG
finalCons : CAGAAAGTGTTGTACCAAAATTGTGAA--TTTCGC-AACGCAAG------GGTTCTGACTGACCCAGG-----CGGATCCAAAATAGTCATATNATGATGTCGA---AAATGTGTAGCAAATTCACTTGTTTGTGTTGCTCG--------------TAAAAATCACCGG-----GAGGGTATATTGCGCCTAGAAGTTGATG---AC--AATCAA--TCG------TTCAT-AT-CTTCATC-TATATGATTTGC-ATAGCCTTTTTTT------A---------CT---TTC-AATCA--AA-----A--ATCAATATTGAATATT-GCA-CG----TTTA---GGGTGAT-T--GATT--GTGAACTTTTAAAACAGA--A--GTCCTTT-------CCTTTCTCTTGTT-TC-ACCCTTAAAT--CCGTGGATTGCAGATCGA-TCAACTGAAA-GAAT--TTGGTGCAGTTT-TAACATGCA-A---GGGCAGTTCGTCAGCTA-TA--TAAACA-GT-GGA-TTAAA-GCTTC----ATACTAATCC--------A-AACTG-TAACTCTGTTTC----AAT-GACAGT--A------TG-TAGA-TTTTTA----ATTTAA-ATTTTGATCAATA-TCCTGTTGTTTATC-----------TT-T-TTTTTATTTTC-----AAG-GCAC--AAA---TTATTCCT-TTGCAGCA-TAAG--TTAATTAATTTTATAG------------------GATTTANC-GCCGGTATTTGGCAATATT-TCAACCCTTTTCCGGTAGACAACTAC-----------ATAAAATATCAGTTTTTGAGANTTTTGG--------AAT-GGAGCTGCGACGGAATAGATGCACAGTATCCAT----------------------------------TAGTATC---------TTTTT-GGCA--TT----TAG-TGTCGTTCGTCACCTTCGTTTCA-G-ACTTTCAG
Alignments
lowQualScore : 11111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111 33333333333333 111 4444444444444444444 111111 111 11 11 22222222 1 222222 444444444 111 1 333333333333 1 00000000000000000000000000000000000000 22222 4444444 1111 11 1 1 11 1111 11111 1 11 1 1 1 2222 1111111 1111 111111111 2222 33333333333333 11111 1111 1 222222222 111111 1111 11111 333333333333 0000000000000000000000000000000000000000000000000000000000000000000000000 22222222222 11 222222 1 222
lowQualScore : 0 66 5 666666 5 88888888888888 1 111 4444444444444444444 555555 6 0 1 444 11 0 11 44444444 8 8 0 8 7 0 9 3 888888 000000000 777 0 0 555555555555 55 0 77777777777777777777777777777777777777 7 77777 3333333 6666 7 88 0 0 33 2 3333 3 88888 0 33 0 0 0 8 5555 6 77 8888888 5 5555 5 888888888 5 4 0 9999 2 5 3 4 0 66666666666666 4 44444 6 77 3333 3 3 6 6 0 888888888 333333 1111 88888 0 5 000000000000 5 44 3 7777777777777777777777777777777777777777777777777777777777777777777777777 66666666666 8 11 333333 0 444
lowQualScore : . .. . ...... . .............. . ... ................... ...... . . . ... .. . .. ........ . . . . . . . . ...... ......... ... . . ............ .. . ...................................... . ..... ....... .... . .. . . .. . .... . ..... . .. . . . . .... . .. ....... . .... . ......... . . . .... . . . . . .............. . ..... . .. .... . . . . . ......... ...... .... ..... . . ............ . .. . ......................................................................... ........... . .. ...... . ...
lowQualScore : 3 99 0 444444 7 00000000000000 0 777 2222222222222222222 000000 0 8 0 000 00 8 00 88888888 0 0 8 0 0 0 8 2 888888 000000000 555 0 2 888888888888 88 0 00000000000000000000000000000000000000 3 77777 3333333 0000 3 33 0 0 88 5 8888 2 55555 0 88 0 0 0 0 8888 0 99 6666666 7 6666 0 444444444 0 4 1 4444 0 0 1 4 1 33333333333333 4 33333 7 99 3333 2 3 7 7 7 000000000 000000 0000 00000 8 7 888888888888 6 22 2 5555555555555555555555555555555555555555555555555555555555555555555555555 00000000000 0 00 000000 6 000
consensus : CAGAAAGTGTTGTACCAAAATTGTGAA--TTTCGC-AACGCAAG------GGTTCTGA-CT-G-A-CC-CA-GG-CGGATCCAAAATAGTCATATNATGATGTCGA---AAATGTGTAGCAAATTCACTTGTTTGTGTTGCT-CG-------------TAAAAATCACCG--G---GAGGGTATATTGCGCCTAGAAGTTGATG---AC--AATCAA--TCG------TTCAT-AT-CTTCATC-TATATGATTTGC-ATAGCCTTT------TTTTA---------CT---TT-CAATCA--A-----AA--ATCAATATTGAATA-TT-GCA-C----GTTTA---GGGTGAT-T--GATT--GTGAACTTTTAAAACAGA--A--GTCC-------TTTCCTTTCTCTTGTT-TC-ACCCTTAAA--TCCGTGGATTGCAGATCG-ATCAACTG-AAAGAAT--TTGGTGCAGTTT-TAACATGCA-A---GGGCAGTTCGTCAGCTA-TA--TAAACA-GT-GGA-TT-AAAGCTTC----ATACTAAT--CCA-------AACT-GTAACTCTGTTTC----AAT-GACAG------T--ATG-TAGA-TTTTT-A--AATTTAA-ATTTTGATCAATA-TCCTGTTGTTTATC-TT-----------T-TTTTTATTTTC-----AAG-GCA--CAA---ATTATTCCT-TTGCAGCA-TAAG-TTAATTAAT---T-----TTATA----G-GATTT-AGCGCCGGTATTTGGCAATATT-TCAACCCTTTTCCGGTAGACAACT------A-----CATAAAATATCAGTTTTTGAGANTTTTGGGGCC-C-AATGGAACTGCGACGGAATAGAT------GCACGG--C---------TAT---C------CATG--TAGTA------TC---TTTTT-GGCA--TTTAG------TGTCGTTCGTCACCTTCGTTTCA-G-ACTTTCAG
Reference ( family-1573 ) : CAGAAAGTGTTGTACCAAAATTGTGAA--TTTCGC-AACGCAAG------GGTTCTGA-CT-G-A-CC-CA-GG-CGGATCCAAAATAGTCATATNATGATGTCGA---AAATGTGTAGCAAATTCACTTGTTTGTGTTGCT-CG-------------TAAAAATCACCG--G---GAGGGTATATTGCGCCTAGAAGTTGATG---AC--AATCAA--TCG------TTCAT-AT-CTTCATC-TATATGATTTGC-ATAGCCTTT------TTTTA---------CT---TT-CAATCA--A-----AA--ATCAATATTGAATA-TT-GCA-C----GTTTA---GGGTGAT-T--GATT--GTGAACTTTTAAAACAGA--A--GTCC-------TTTCCTTTCTCTTGTT-TC-ACCCTTAAA--TCCGTGGATTGCAGATCG-ATCAACTG-AAAGAAT--TTGGTGCAGTTT-TAACATGCA-A---GGGCAGTTCGTCAGCTA-TA--TAAACA-GT-GGA-TT-AAAGCTTC----ATACTAAT--CCA-------AACT-GTAACTCTGTTTC----AAT-GACAG------T--ATG-TAGA-TTTTT----AATTTAA-ATTTTGATCAATA-TCCTGTTGTTTATC-TT-----------T-TTTTTATTTTC-----AAG-GCA--CAA---ATTATTCCT-TTGCAGCA-TAAG-TTAATTAAT---T-----TTATA----G-GATTT-ANCGCCGGTATTTGGCAATATT-TCAACCCTTTTCCGGTAGACAACT------A-----CATAAAATATCAGTTTTTGAGANTTTTGG-------AATGGAGCTGCGACGGAATAGAT------GCACAG------------TAT---C------CAT---TAGTA------TC---TTTTT-GGCA--TTTAG------TGTCGTTCGTCACCTTCGTTTCA-G-ACTTTCAG
gi|1 : CAGAAAGCGTTGT-CCAAAATTGTGAAGTTTCCGCGAACGCAAA------GGTT-TGA-CTAG-ATCC-CA-GGGCGGATCCAAAATAGTCATATGATGATGTCGACAGGAATTCGCAGCTAACGCAATAG-------------G-------------TGGGGGTCACCGTTGTCCAAGTGTGTGT-GCG----GAAGTTGTTGTAAACGGAATCAAGGTCG------GACAT-AT-CT-CATCATA-ATGATTTGCCAT-GCCTTTTTTTTTTTTTA---------CT---TTCCGATCG--AACGATAA--ATC-ATATTGAATA-TGAGCAGCGAAGGTTT------GTAAT-TTAGATTTGATAAAGTTTT-AAACAGACGATTGTTCTTTTGAATTTCCTTTCTCTTGTTCTA-ACCCTTAAAGGGCCGTGGATTGCAGATCGAATCAAATGAAAAGAACGATT-GTGGAG-----AACATGCACA---GAGGAGTTCGTCAGCTA-TA--TAAACATGTAGGAGTT-TAAGCCTCTCCTACATAAATCCCCACACAAACAACTGGTAACTCTGTTTC----AAT-GACAG------T--ATG-TAGAGTTTTTCA--AATTTAATATTTTTATCAATA-TCCTGCTATTTATCGTTTTGTTGGTTTGT-TTTTCATTTTTCGGGGAAGAGCACCCAACACAT--TTCCTCTTGCAGCA-TAAG-TTAATTAAT---TTA---TTTTAATCTG-GATTTAAGCGCCGGTA-TTGGCAATATTATCAACCCTTTTCCGGTAAACA--T------ATCCCTCACAATATATC---TGGTGAAAG-CTTGGAGCCTCAAATGGAACTGC-ACACAGTAGATTACCGGGCATGGGTCTTTACTAATTATTTCC------CATGGGTAGTAAGTAACTCCCTTTTTT-GGCATTTTTAG------TGTTGTTCGTCACCTTCGTTTCACG-ACTTTCAG
gi|10 : cagagaatagggcagtgatttggtaccagaattagagctagatgatcactgtgattattatttttatcattgaATTAAT---T-----GTGTA----GAGGTTT-AAAGCCGCT-TTTGGCAATAAT-TTAGCCATTTTATGGTGGTTAACT------A-----CATGAAATAT--GTTCTtactttgat
gi|11 : gaatagATATT-TCAACTCTTTTCTGGTAGGAAACT------A-----TATAAAATATCAGTTTTCGAGAATTT------------TGGAGCTCTGATGGAATGAA---------ACAG--------------------------------AATA------TCT--TTTTT-GGCA--TTTAC------AGTCGTTCGTCACCTgtattgaaggcttcaataggagtttccctggaaaaggaagaatagatac
gi|12 : gcgatAGAAAGTGTTGTACCAAAATTGTGAA--TTTCGC-AACGTAAG------AGTTCCGA-CT-GGA-CC-CA-GG-CGGATCCAAAATAATCATATTATGATGTTGA---AAATGTGTAGCAAATTCACTTGTTTG
gi|13 : CAGAGATAGATGTACCAAAATTGTGAA--TTTCAC-AACTCCAG------GGTTCTAA-C----A-CTATATAG-CGGGTCCGATATAGTTATNCCA
gi|13 : tgcatatttatgaagtgGTTATNCCAAAATTGTGAA--TTTCAC-aaattgtgaatttcac
gi|14 : tgcatatttatgaagtgcagagatagatgtaccaaaattgtgaatttcacaactccagggttctaacactatatagcgggtccgatataAT--CCA-------AACG-GTAACTCTAATTCTGCCAAT-GAAAG------TGGATGGTGCA-TTTTTTAGAAATTTAA-ATTT------ATT-TACTGTTGTTTATC--------------T-TTTTTATCTTC-----AAG-GCA--CA
gi|15 : --CAA---ATTATTTATCTTGCAGCA-TAGG-TTAATTAACTTAT-----TTATA----T-GGTAT-ATCACC-GTA-TTGGCAATAGT-TTAGCTATTTgtt
gi|16 : tT-AAAACT-A----ATGC-AAT--CCA-------AACT-GTAACTCTGTTTCT---GTT-GAAAG------T--GTG-TACA-Tacagtg
gi|2 : tgcggCAGAAAGTGTTGTACCAAAATTGTGAA--TTTCGC-AACGTAAG------AGTTCCGAACT-GGA-CC-CA-GG-CGGATCCAAAATAATCATATTATGATGTTGA---AAATGTGTAGCAAATTCACTTGTTTGTGTTGCT-CG-------------TAAAAATCACCT--G---GTAGGTATATTGTGCCTAGAAGTTGATG---AC--AATCAA--TCG------TTCAT-AT-CTTCATC-TATATGATTTAC-ATAGCCTTT------TTTTA---------CT---TT-CAATCA--A-----AA--AT-AATATTGAATATTT-ACC-T----GTTTACACGGGTGGTAT--GATT--GTGAGCTTTTAAAACAGA--A--GTCC-------TTTCCTTTCTCTTGTC-TCTACCTTT-AA--TCCGTGGATTGCAGATCG-ATCAACTG-AAAGCAT--TTGGTGCAATTTGTAACATCCA-A---GGGCAGTTCGTCAGCTA-TA--TAAACA-GT-GGA-TTAAAAGCTTC----ATATCAAT--CCA-------AATT-GTAACTCTGTTTC----AAT-GACAGTACATTT--ATG-TAGA-TTTTTCA--AATTTAA-ATTTTGATCAATATTCCTGTTGTTTATCGTT-----------TATTTTTATTTTC-----AAA-GCA--CAA---ATTATTCCT-TTGCAGCA-CAA---------------------TATA----G-GATTT----GCC-GTATTTAGCAATATT-TTAACCCTTTTCTGGTAGACAACTACTGTAA-----CATAAAATGCCAGTTTTTAAGACTTTTGG-------AATAAA------ACAGAATAGAT------ATACAG------------TAT---C------CAT---TAGTA------TC---TTTTT-GGCA--TTTAGTGTAACTGTTGTTCGTTACCTTCGTTTCA-A-ACTTTAAGgt
gi|3 : CAGAAAGTGTTGTACCAAAATTGTGAA--TTTCGC-AACGCAAGCTCAAGGATTCTGA-CTAG-G-TC-CA-GGGCGGATCCAAAATAGTCATGTTATGATTTCGA---AAATGTGTAGCAAATTCACTTCTTTGTGCTGCT-TG-------------TAAAAATCACTG--G---GAGGGTATATTGCGCCTAGAAGTTGATG---AC--AATCAA--TCG------TTCAT-AT-CTTCATC-TATATGATTTGC-ATAGGCTTT------TTTTAAATTTATTTCTACATT-CAATGA--A-----GATAATCAATATTGAATA-TT--TA-C----A---A---GGGTGAT-------------AACTTTTAAAACAGA--A--GTCC-------TTTCCTTTTCCTTGTT-TC-AACCTTAAA--TCCGTGGATTGCAGATCG-ATCAACTG-AAAGAAT--TTGGTGCAGTTT-TTACATGCA-ACCTGGGCAGTTCGTCAGCTAGTATTTAAACT-GT-GGA-TT-AAAGCTTCTGA-ATACTAAT--CCA-------AACT-GTAACTCTGTTTC----AATGGACAG------T--ATG-TAGA-TT---------TTTAA-ATTTTGATCCATA-TCATGTTGTTTAT--TT-----------T-ATTTTATTc
gi|4 : atcatttgaCTCTGTTTT----AAT-GACAG------T--ATG-TAGA-TTTTCA---AATTTAA-ATTTGAATCA------TTTTTTTTTTTT-TT-----------T-TTTTTGTTT
gi|4 : -TTTTT----TGTTTAA-ATTCGGATCAATT-TCCTGTTGTTTATC--------------T-TTTTTATCTTC-----AAG-GCC--CAA---GTTCTTCCC-TTGCAGTATTAAGNNNNNNNNNN---N-----NNNNN----N-NNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNTAGACAACT------C-----TATAAAaaattcggatcaatttcctgttgtttatcttttttatcttcaaggcccaagttcttcccttgcagtattaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagacaactctataaataaatacatgtatctcattacatgtaatatcattttggcattttgtgtcgttcgtcacctcttttcagtactttg
gi|4 : ctctgttttaatgacagtatgtagattttcaaatttaaatttgaatcattttttttttttttAATAAAT------ACAT-G------------TAT---CTCATTACATG--TAATA------TC---ATTTT-GGCA--TTTTG------TGTCGTTCGTCACC-TCTTTTCA-GTACTTTtaaatacatgtatctcattacatgtaatatcattttggcattttgtgtcgttcgtcacctcttttcagtactttg
gi|5 : ctctgttttaatgacagtatgtagattttcaaatttaaatttgaatcattttttttttttttttttttgtttaaattcggatcaatttcctgttgtttatcttttttatcttcaaggcccaagttcttcccttgcagtattaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagacaactctataTA-TCTTTTTTTTTCTT-TT-----------T-TTTTTTTCCCC-----AAG-GTA--CAA---ATTATTCCT-TTGCCGCA-TAAG-TGAATTAAT---TGATTTTTA-A----G-GACTT-AGCGCCA-TATT-GGCAATATT-TCAACCCTTTTCCAGTAGACAACT------A-----CATAAAATATCAGTTTTTAAGACTTTTGGGGCCAC-AATGGAA-TGAAACAGAATAGAT------GCACAGCACA--------TATC--C------CAT---TAGTA------TC---TTTTTAGGTA--TTTAG------TGTTGTTCGTCACC-TCGTTTCA-GAACTTTCAGg
gi|6 : tttattAGAAAGGGTTGTACCAAAATTTTGAA--TTTCGA-AAAGCTAT------GGTTCTAA-TT-G-A-------------ATCCAAAATAGTCATATGACGGTGTAGA---AAATGTGTAGCAAATTCACTTGTTTGTATT-CTACATAAAGATGTGAATTAAAAATCACTG--G---G-CGGTATATTGCGCCAAGAAGTTGATG---AC--AG-------CG------T--ATAATGCTTCATC-TGCATTAATTGC-CTTACC-AT------GTTTA---------CT---TT-CAATTAGGA-----TA--ATCAATATCGAATA-tacttt
gi|7 : tatcatttgaaCAGAAAATGCTGTACCAAAATTGTGAA--TTTTGC-AACGCAAG------GGTTCTGA-CT-G-A-------------ATCCAAAATAGTCATATACTGATGTCGA---AAATGTGTAGCAAATTCACTTGTTTGTGTTGGT-CG-------------TAAAAATCACCG--G---GAGGGTATATTGCGCCTAGGAGTTGGTG---AC--AATCAA--TCGTTGATATTGAT-AT-CTTCATC-T
gi|8 : ttatttgaAGATCG-ATCAACTG-AAAGAAT--TTGGTGCAAATT-TA-CATGCA-A---GGGCAGTTCGTCAGCTA-TA--GAAACA-GT-GGA-TT-AAAGTTTC----ATACTAAT--CCA-------AGCT-GTAACTCTGTTTC----AAT-GACAG------T--AGG-TAGA--TTTT----A----AA-ATTTTGATCAATA-TCCTGTTTTTCATC-TT-----------T-TCTTTATTTTC-----AA
gi|9 : TTA----ATACTAAT--CAA-------AACT-GTAATCCTGTTTC----AAT-GACAG----------------------T----AATTTGA-ATTTTGATAAATA-TCCTGTTGTTTATC--------------T-TTTTTATTTTC-----AAG-GTA--CAG------ATTCCT-AGGCAGCA-TAAG-TTAATTGAT---T-----TTATA----G-GATT