lowQualScore : 1111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111111 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 66666 2222222 2222 2222 22222 11 5555555555555555555555555555555555555555555555555 3333 444444 22 11 111 333333333 22222222 555555555555555555555555555555555555555555555555555555 1111 2222222 333333333 1 2222222 1 4444 33333 22 6666666666666666666 33333 1 1 11 33 8888888888888888888888888888888 11 111 1 2222 1 11 5555555 11 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 22 1 444 44 444444 44 5555555 111111 4 444444 1 1 22 777 1 3333333333333333333333333333333333333333333333333333333333333333333333333333 1111 333333333333 666666666666666666666666666666 222222222 11 1111 1111 333333 11 111 333333 3333333 6666666666666666666666666666 1111 4444444444444444
lowQualScore : 9999 22222 1111111 9 1111 3 2222 33333 5 77 77 5555555555555555555555555555555555555555555555555 77 0000 5 333333 5 5 77 22 2 33 8 8 000 777777777 66666666 4 333333333333333333333333333333333333333333333333333333 7777 3333333 666666666 2 0000000 3 5555 66666 00 8888888888888888888 22222 3 0 3 88 88 7 1 8888888888888888888888888888888 66 3 000 3 9999 3 44 5555555 0 44 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 6 5 000 66 111111 66 6 9999999 555555 0 333333 5 5 11 000 5 0000000000000000000000000000000000000000000000000000000000000000000000000000 5555 222222222222 5 555555555555555555555555555555 5 2 111111111 5 11 5 888 3333 5555 2 666 555555 66 00 777 77 2 9 111111 2222222 4 4 66 55 0000000000000000000000000000 4 66 5 2 9999 5 666 2 7777777777777777 2 2 3
lowQualScore : .... ..... ....... . .... . .... ..... . .. .. ................................................. .. .... . ...... . . .. .. . .. . . ... ......... ........ . ...................................................... .... ....... ......... . ....... . .... ..... .. ................... ..... . . . .. .. . . ............................... .. . ... . .... . .. ....... . .. ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .. . . ... .. ...... .. . ....... ...... . ...... . . .. ... . ............................................................................ .... ............ . .............................. . . ......... . .. . ... .... .... . ... ...... .. .. ... .. . . ...... ....... . . .. .. ............................ . .. . . .... . ... . ................ . . .
lowQualScore : 8888 33333 3333333 8 7777 3 0000 77777 7 11 99 6666666666666666666666666666666666666666666666666 11 9999 7 111111 7 7 99 66 1 66 0 0 000 000000000 00000000 2 222222222222222222222222222222222222222222222222222222 0000 8888888 222222222 0 0000000 3 7777 77777 77 5555555555555555555 00000 3 7 3 33 77 3 0 7777777777777777777777777777777 77 7 777 3 7777 3 00 7777777 7 00 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 00 0 0 000 00 000000 00 0 0000000 000000 0 000000 0 0 00 000 0 6666666666666666666666666666666666666666666666666666666666666666666666666666 6666 999999999999 0 000000000000000000000000000000 0 5 000000000 0 22 0 888 4444 9999 2 666 000000 11 99 111 88 3 3 444444 8888888 4 4 11 33 1111111111111111111111111111 4 99 0 9 1111 7 999 9 6666666666666666 7 7 1
consensus : AGTGTTCCC-CCCAGGGC--CCTTN-T--AGCGCTGTATTTT--TACAGCGCTATC---GAGTTTTCAGCG-CT-GT--GCTATCA---CT--A--CAGC-GC-T--------------CTGCT--AT--NGCTACCAGC-GC--TGTC-CTAT----AAAGAT-CA-AT--TAGAACCGNGCA--TTG-TG-A-T-GGTTA-A--A---TATC----TTGTAAGGAAGTCATG-TCNG-------AG---------------A-TTTTTC-AC--CCCATAGC-ACATTT----TATGTTGC--A-TCGGACTA--TTTTTAACTCTCCT--GAAACGCC-AGGT--GGTAGATTTT-C-A-CACCT-GATCTA-CCC---------GC---ACATCG-CGAAA-ATCCGTC-GAA--ATTC-CACACCTT-----TT-GAAANCAC--G--GCT-CC---GTTTCACGGATCNTTGNTTTTGTT-AAAN--AACAAACA-AC-TAA-----T-TGTATTGTTAATTAAC-TTCACT---AACCTGCATG--C-T--AT---AG-TTNTTACTTATTGTCTAANTAACAGGAGNNTAACTTGAGTTTAAATTTATTCCAAACCATAAAC--GGTTAGCTAT-CGTGTGGTTTAAAAACGACAATATTAGC----GGATGANCGCTTNCCAACATGCAAATTTGTAAANGTAGATTATCTATCGCGTTTGAT-GAAANAATCGCCGAGTAAANGTNATCNAACN--TCATGAA--TA-AT--AAAAATTT-A-ATAAGTT-TTAAACNTAATAAATGNTAT-T-GT-AATAAATA-------AT-GAGT-----ACT-------T---A-GAGTTTTATTATGGCCTNTGNATCAGCATGAAATCATCGCNGTGAGGTAACNAAGANTTCATTAAAACT---ATTATCTCCCGCGAGGATAAGAC-AACGGCTTCCATCACACGC---TGTGAT-A--TGCAAATTGTGAACTTTCTAAAACATGGCTTCTAATATAGGCGTTCCAGCTAAACCACAAGGTAGAGTCACTGTTCAAAGTATGAGACGGAGGGAGCATTGATTCCCTGGACACCTAGCTGTTTAAGATCAAAATTTAACGCCTAATA-CTGC-AATATTACTATAAGTAAAAGATTA-GAAGTATG------GAACAATTTTATTT-CACGTTTTTTTGGTATACGTTTGGGTCATGTGTTGATTAAGTAAAATGATTGTGAGTAATTG--AAC--TGTC--CTATAGCAA--GATCTTATAA---TTAAAA--------GTAAGCA----GTTAT--CA-------GCAA-TATTAAA---A---------T--A---TG-T--TATCAA-TNA-----A---TGC-TT-CA-A---T-A-TAAAC--A-TATT-G-AACTTAGTAAA---TTTAT--ACAAAGATCA-GTGTA-AACAAATNTTAAACA--ATGAAAAACAT-TAA-AC-CGCA-GCG--AC-GCGTTTC-CA-----CAAG--C-CT-A--ATAAG-GT-CGTGT--CG-CGCGC-TN---TA-AA--ATAC-AGCGCT-ATN--A-AAAAN-GCCTGGG-GA-GA-ACACTG
Reference ( gi|2 ) : AGTGTTTCT-CCCAGAGCGACCTTT-T--ACCGCTGTATTTT--TTCGGCGCTATC---GAGTTTTCAGCA-CT-CT--GCT-TCA---AT--A--CAGC-GC-T--------------CTGC---AT--AGCTACCAGC-GC--T-TC-CT-T----AAAGAT-CA-AT--TAGATTTGTGCA--TTG-TG-A-T-GGTT--A--A---TATC----TTA-AAGGAAGCCA-G-CCTG-------AG---------------A-TTTTTC-ACGTACCATAGCTTCATTT----TATGTTGC--A-TCAGATTA--TTTCCAACTCTCCT--GAAATGCC-AGG---AGTAGATTTT-TCA-CACCT-GATCT--CCA---------GC---ACATC--TGGAA-ATCCGTC-GAA--ATTC-CACACTTTAG---TTGGAAAACACTAGAAGCT-CT---GTTTCGAGGATCCTTAGCTTTGTT-AAAT--AACAAACA-AC-CAA-----TGTGTGTTCTTAATTAAC-TTCACTC-AAACCTGCAAG--C-T--AT---AG-TTGTT-CT---------ATTAA----AGGATAA-TTGAGTTAAAA---ATGCGAAA-AACAAACTTAATTAAGCATGCGTGTGGTT--AAAACAAC-ATATTAGCATAGGGAGAATCACTTCTCACCAT-CAAAT---CGAAAGTAGATTA---ATCTTGTTGAATCGAAAGAAT----GAATAAATGTCATCC-ACA--TCATGAAATTA-ATGCAAAAATTT-A-ATAAGTT-TTAAACTTAATAAATGTTAT-C-G--AACAAATA-------ATCGAGT-----GCT-------T---A-GAGTTTTATTATGACA-ATGA--CA-CATGAAATCATCGCGGT------ACTAAAATTTT-TT--AACTCACAATATCTCACAC----AT-AGACAAACGGCTTCCATCACA-ACTTGTGTGATCAATTGCAAATTGTGACTTTCCTATA--ATGGCTTC--------------------AGCCAC-AGGTAGATTTAC-GTTCCAGGTAT-AGACTGATG-----CTGATTCCTGGAACACCTCGCTGTTTTTAATCAAAG-TTAACGCCTAATACCTGCAAATATTAC-GTAGGTAAA--ATTATGAAGTATGGGTTTTGAACAA-TTTATTTACACCATTGTTTTGTATATTTTT--TTCATTTGTTGAT--AGT--AAT-ATTGT-ATTAATTGGTAAC--TGTTAACTATAGTAA--GGTTTTATAA---TTAAAA--------GTAAGCA----GTTA---CA-------GCAA-TATTAAA--TA---------T--A---TG-T--T--CAA-TCA-----A---TGC-TT-CA-A---T-A-TAAAC--A-TATT-A-AACTTAGTAAA--ATTCAT--ACAAAGATCA-GTGTT-AACCAATTTTAAGCA--ATGAAAAACAT-TAAGAC-CGCA-GCG--AC-GCGTTTC-C------CAAG--C-CT-A--GTAAGCGT-CGTGT--CG-CGCGC-TA---TA-AA--ATAC-AGCGCC-CTC--A-AAAAT-CCCTGGG-GA-GA-ACACTG
gi|5 : AGTGTTCTC-CCCAAGGC--CCTTAAT--AGCGCTGTATTTTAACCCAGCGCTATT---GAGTTTTCAGCA-CTGGT--GCTATCACTTAC--C--CAGT-GC-T--------------TTGCT--ATA-AGCTACCAGC-AC--TGTCGCTAT----AAAGAT-C--AT--TAGA-TTGTGTA--TTG-TG-A-TGGGTT--A--AATTTATC----TTGTAAGAAAGTCATG-TCAA-------AG---------------ATTTTTTC-AC--CCCA-AGC-ACATTT----TATGTTGC--A-----ATTA--TATCAAA
gi|4 : AGTGTT-CT-CT-AG-GC--CATTT-T--AGCGCTGTA-TTT--TAAGGCGCTAT----GAG-TTTCAGCA-CT-GT--GCTATCA---CT--ACTCAGT-G--T--------------CTGCT--AT--AAGTACCAGCAGT--G-TC-CTAT----AAGGAT-CA-ATAGTAGATCTGTGTAC-TTG-TG-A-T-GGTTA-A--A---TATC----CTG-TAAGAAGCCA-T-GCTGGTGTCAAAG---------------A-TTTTCC--CG--CCATAGC-ACATTT----TTTG-TGC--A-tgtaagcagttacaagcaaatattaaaaaatgttatcaagaatgctttcaatataaagaatattgaagttagtaaattataacaagatcaatgtaaacaaatttaaaacatgaaaaacattaaaccgcaatgaagcgtttcacaacaagctcctaataaggttgtgccgcgcgcgtcaaaatacaagcgctaataaaaaaatcctggggaggaacact
gi|6 : gAGTGTTCTC-CCCAGGCC--CTTTT-T--AGCGCTGTATTTC--TACAGCGCTATT---GAG-TTTCAGCACCT-GT--GCTATCA---CTTAA--CAGCTGC-T--------------GGGCT--ATA-AGCTACCAGC-ACTGT-TC-CTAT----AAAGATCCA-AT--AAG---TGT-TA--TTGCTG-A-T-GGTTA-A--A---TATC----TTGTAAGAAAGTCATG-TCAA-------AG---------------A-TTTTGC-AC--CCCTTAG---CAATT----TATGTTGC--A-gttaatgcaatgtaagcaagttaagcaatattaaaaaaaattgttatcaagtgaatgcttcaataataaacaatattgaaacttagttaaacttatacaaagatcatgtaaacaaatttcaacatgaaaaatattaacttgcaggcggtacgcgttctcacgagacaagactgctataggctcgtcctgcgcgcttctaaattatacagcgctataaaaaatcctggggagaacactgga
gi|11 : TGTTCTC-CCCAG-GC--CCTTA-A--AGCGCTGTGCTTT--A-CAGCGCTATC---AAGTGAG-AGCA-CT-GT--GCT--------------------------------------------AT--TGCTATCAGC-AC--TGTC-CTAT----AAAGAT-CA-AT--TAGAACCGAGCA---TG-TA-AGC-AGTT--ATTA---CATCAATATTA-AAattaatcatgacgttacatcaatattaaaactgttatcaagaatgctcacatataaacatatgaagttagtaaaattatacaaagatcaatgtaaacaaatttaacatagaaaacatataaaccgcaacgacgcgtttcacaaacaagctctaataggtcgttcgccgccctctaaatacagtgctatcaaagacctgggcgagaacactg
gi|1 : TTCTGCCCAGA----CCTTT-TTAACTGCTGTA--TT--TTCAGCGCTATCA--GAGTTTT-AGCG-CT-CTGGGCT-ATA---CT--AC-CAGC-ACGT--------------CTGCT--ATGAAGCTACCTGC-GC--TGTC-CTATGAGAGAGGAT-CAGAA--TAGA-TTGTGTAATTTG-TGAA-T-GGTTGAG--A---TATC----TTATAAAGAAGGCATGTCTTG-------AGTGTCAATGATCAATAA-TTTCTCAAC---CCATAG--TCATTTGAAATATGTTGTA-A-TCGGATTA-------A--TCT-CT--GAAATGCC-AGGT--GGTAGATTTT-CAA-CACC--GATCTA-CCC---------GC---ACatatgttatcaatgaatgcttcaattaaacataatgaacttagtaaattgtacaaagatcagtgtaaacaatattaaacatgaaaaacaaacccgcagcaatacgtttcataataataaggtcaaatcctggggagaacactgg
gi|9 : gTTCT-CCCCAGGC--CCTTA-A--AGCGCTGTGTCTA--TACAGCGCTATCAGTGAG-----AGCA-CT-GT--GCT--------------------------------------------AT--TGCTATCAGC-AC--TGTC-CTAT----AAAGAT-CA-AT--TAGAACCGAGCA--Tcagagaaataggcctatataggcaacacataatggaatacccgtccgaaattcacacctttaggctttgaaaaccacttatagctctcctgtttataaggtcattggtcttgttaaaggaaacacacatactaattgtatcttaattacttcactcttaacctgccagcgtataagagtttttacttattgtctaattaacaggaggataacttgagtttaaatttattccaaaccataaacggttagctatcgtgtggtttaaaaacgacaatattagcggatgataactctcaacatgcaaatttgtaaacgtagattatctattttgttaatgaaaggtaaatatcatccaacagtccatgaagatctcacataagttattaaacttaataatggtatatgtaaaaatatagggggatagtattttggagagttttattatgacctatggatcagcatgaaatcatcgcggtgaggtaacaaagagttcattaaaactattatctcccgcgaggataagacaacggcttccatcacacgctgtgatatgcaaattgtgaactttctaaaacatggcttctaatataggcgttccagctaaaccacaaggtagagtcactgttcaaagtatgagacggagggagcattgattccctggacacctagctgtttaagatcaaaatttaacgcctaatactgcaatattactataagtaaaagattagaagtatggaacaattttatttcacgtttttttggtatacgtttgggtcatgtgttgattaagtaaaatgattgtgagtaattgaacggtgttatatagtaaccggttatataacctttaagtatttagttttagttgttcttttttctcttctatattataatcatatgcacgagggtgtaagcagttacattatgttatattattagataagagattgataaaatgtacaatcaatatgagaaacctatattaaacttagtaagatatttatacaaagatcatgtgttgaacaaaatttaaaacatgaagaaaactctcacgagaaagctctaagtaagtctagtcgcgcgctctaaatatcagtgctatcaaaaaatcctggggagatacac
gi|13 : gAGCG-CT-GT--GCT-T------T--A--CAGC-GC-TATAAAGTGAGAGGACTGTGCTAT--TGCTATCAGC-AC--TGTC-CTAT----AAAGAT-CA-AT--TAGAACCGAGCA--Tgtaagcagttatacagcaatattagaatatgttatcaatgaatgctcaataaaactaatgatcttagtaaagtacaaagatcagtgtaaaacaatattaaacatgaaaaacaaacccgcagggatacgtttcacaataataaggtcgtgtcatgcgatttaaatacagcgctattacaaaatcctggggagaacactg
gi|3 : ctccccaggcccttaa----TATGTTACTAA-TCAGACTAATTTTTTAGCTCTTCTATGAAA-ACC-AGGTGGCGTAGATTTTATCAGCACTTTGATTT--GCAAGAGTACGAGCCCGACACCGTCAAAA-ATCTGTC-AAATAATTTTCACACCCT-----TTTGAAAACAT--GATCTT-GT---TTTTCATGGATCTTGATTTTTGTTTAAAT--AAAAAGCA-ACACAAATGAATGTGTAGTGTTAATTAACGTTCACT--GAACCTGCATGCTC-T--AT---AGCTTGTT-TT---------AATAA----AGCTTAA-TTAAATTgtaagcagtta
gi|7 : aagagaagccatgtcattgtcatttttttaataatccatcatttagcaatgtgTTGC--AATGGGACTA--TTTTTCACTCTCCT--G-GGCGCCGAGT---GGTAGATTTT---A-CACCT-GATCTACCCC---------AC---ACATC--TCAAA-ATTTGTT-GAA--ATT--CACACCTT-----T--GAAATCAC-----GCTCCC---AATTCACGGATCCTTGATTTTGTT-AAAC----CAAACA-AC-TAA-------TGTGTTGTTAATT-AC------------CCTGCATG--C-TGAAT---AG-Tgggatgcatcctctctagattctgttagggaagattaactttacaactcttagcctccgacaaacaaagtaaaaacgctttgtatatcgaaaaattaacacgagtcgcgcgagtatgctgaattaaaggttaaaattgtcattaaattacataaaattaataaggtttaaacacgttaaatgattttgtaaataaataataagttatcagctagtcatctaagagttttgtaatggctctatcacatgaaatcatgctgtataaaat
gi|1 : accacctgtccaatatactCA---------AC---ACATAA-TGGAATACCCGTCCGAA--ATTCACAC-CTTTAGGCTTTGAAAACCACTTATAGCT-CTCCTGTTTATAAGGTCATTGGTCTTGTT-AAAGGAAACACACATAC-TAA-----T-TGTAT-CTTAATTA-C-TTCACTCTTAACCTGCCAG--CGT--ATAAGAG-TTTTTACTTATTGTCTAATTAACAGGAGGATAACTTGAGTTTAAATTTATTCCAAACCATAAAC--GGTTAGCTAT-CGTGTGGTTTAAAAACGACAATATTAGC----GGATGATAAC-TCTCAACATGCAAATTTGTAAACGTAGATTATCTATTTTGTT-AAT-GAAAG---------GTAAATATCATCCAACAGTCCATGAA---G-AT-------CTC-ACATAAGTTATTAAACTTAAT-AATGGTATAT-G--TAAAAATATAGGGGGAT--AGT-----ATT-------TTGGA-GAGTTTTATTATGACCTATGGATCAGCATGAAATCATCGCGGTGAGGTAACAAAGAGTTCATTAAAACT---ATTATCTCCCGCGAGGATAAGAC-AACGGCTTCCATCACACGC---TGTGAT-A--TGCAAATTGTGAACTTTCTAAAACATGGCTTCTAATATAGGCGTTCCAGCTAAACCACAAGGTAGAGTCACTGTTCAAAGTATGAGACGGAGGGAGCATTGATTCCCTGGACACCTAGCTGTTTAAGATCAAAATTTAACGCCTAATA-CTGC-AATATTACTATAAGTAAAAGATTA-GAAGTATG------GAACAATTTTATTT-CACGTTTTTTTGGTATACGTTTGGGTCATGTGTTGATTAAGTAAAATGATTGTGAGTAATTG--AACGGTGTTA--TATAGTAACCGGTTATATAACCTTTAAgctgaaaaaacgaattattccccttgccgtttaaaacgcttgccaatatcaaaaagtagaaatcgcgtttgatacaatcgccgaataaaggtaaaatttcatgaatacatgaaaatttgaatagttttaatttaataaatttatttgtaataaacaatgagtaagagttttattattgccttaa
gi|7 : gttctgcccagacctttttaactgctgtattttcagcgctatcagagttttagcgctctgggctatactaccagcacgtctgctatgaagctacctgcgctgtcctatgagagaggatcagaatagattgtgtaatttgtgaatggttgagatatcttataaagaaggcatgtcttgagtgtcaatgatcaataatttctcaacccatagtcatttgaaatatgttgtaatcggattaatctctgaaatgccaggtggtagattttcaacaccgatctacccgcaccagagaaataggcctatataggAAACGCTTGCCAATAT-CAAA-------AAGTAGA--A---ATCGCGTTTGAT----ACAATCGCCGAATAAAGGTAA--A-ATT--TCATGAA--TACATG--AAAATTTGA-ATA-GTT-TTAA-TTTAATAAAT-TTAT-TTGT-AATAAACA-------AT-GAGT-----A-------------A-GAGTTTTATTATgtatttagttttagttgttcttttttctcttctatattataatcatatgcacgagggtgtaagcagttacattatgttatattattagataagagattgataaaatgtacaatcaatatgagaaacctatattaaacttagtaagatatttatacaaagatcatgtgttgaacaaaatttaaaacatgaagaaaactctcacgagaaagctctaagtaagtctagtcgcgcgctctaaatatcagtgctatcaaaaaatcctggggagatacac
gi|3 : accacctgtccaatatactttgcaatgggactatttttcactctcctgggcgccgagtggtagattttacacctgatctaccccacacatctcaaaatttgttgaaattcacacctttgaaatcacgctcccaattcacggatccttgattttgttaaaccaaacaactaatgtgttgttaattaccctgcatgctgaatagtgctgaaaaaacgaattattccccttgccgttta--TCATTAAATTA----CATAAAATT-A-ATAAGGT-TTAAACACGTTAAATGATTT-T-GTAAATAAATA-------AT-AAGTTATCAGCTAGTCATCT---AAGAGTTTTGTAATGGCT-CTAT--CA-CATGAAATCAT-GCTGT------A-TAAAATtgccttaa
gi|14 : aagagaagccatgtcattgtcatttttttaataatccatcatttagcaatgtgtatgttactaatcagactaattttttagctcttctatgaaaaccaggtggcgtagattttatcagcactttgatttgcaagagtacgagcccgacaccgtcaaaaatctgtcaaataattttcacacccttttgaaaacatgatcttgtttttcatggatcttgatttttgtttaaataaaaagcaacacaaatgaatgtgtagtgttaattaacgttcactgaacctgcatgctctatagcttgttttaataaagcttaattaaattgggatgcatcctctctagattctgttagggaagattaactttacaactcttagcctccgacaaacaaagtaaaaacgctttgtatatcgaaaaattaacacgagtcgcgcgagtatgctgaattaaaggttaaaattgAAAAGTTG-A-ATAAGTT-T-AAACGTAATAAATGTTAT-T-GT-AATGAATA-------AT
gi|9 : tgtacagtcactgaataaaggtaaaatttcatAC--TGTC--CTATA--AA--GATC----AA---TTAGAACCGAGCATGTAAGCA----GTTATA-CA-------GCAA-TATTAGA---A---------T--A---TG-T--TATCAA-TGA-----A---TGC-T--CA-A---T-A--AAAC----TAAT-G-ATCTTAGTAAA--GT------ACAAAGATCA-GTGTA-AAACAATATTAAACA---TGAAAAACA----AACC-CGCA-GGG--AT-ACGTTTC-A------CAA------T-A--ATAAG-GT-CGTGT--CA-TGCGA-TT---TA-AA---TAC-AGCGCT-ATT--ACAAAAT--CCTGGG-GA-GA-ACACTGaagttacagattacatctattgcacttaa
gi|11 : gttctccccaggcccttaaagcgctgtgtctatacagcgctatcagtgagagcactgtgctattgctatcagcAC--TGTC--CTATA--AA--GATC----AA---TTAGAACCGAGCATGTAAGCA----GTTATTACA-------TCAA-TATTAAA---A---------T--A---TG-T--TATCAA-TGA-----A---TGC-TT-CA-A---T---TAAAC--A-TAAT-G-AACTTAGTAAA----TTGT--ACAAAGATCA-GTG-T-AAACAATATTAAAC---ATGAAAAAC----AAACC-CGCA-GCA--AT-ACGTTTC-A------TAA------T-A--ATAAG-GT-C
gi|6 : tgttctccccaggcccttaaagcgctgtgctttacagcgctatcaagtgagagcactgtgctattgctatcagcTAGCAA-----TTTATG----TTGCAA--------TTAATCATGACGTTA---CA-------TCAA-TATTAAA---A---------C------TG-T--T----A-TCA-----AGAATGC-T--CACA---T-A-TAAAC--A-TATG-A-AG-TTAGTAAA--ATT-AT--ACAAAGATCA-ATGTA-AACAAATTT--AACA---TAGAAAACATATAA-AC-CGCA-ACG--AC-GCGTTTCACAAA---CAAG--CTCT-A--ATAG--GT-CGT-T--CGCCGCCC-TC---T--AA--ATAC-AGTGCT-ATC--A-AAGA---CCTGGGCGA-GA-ACACTGaaatcctggggagaacactgg
gi|5 : agtgttctccccaggccctttttagcgctgtatttctacagcgctattgagtttcagcacctgtgctatcacttaacagctgctgggctataagctaccagcactgttcctataaagatccaataagtgttattgctgatggttaaatatcttgtaagaaagtcatgtcaaagattttgcacccctTTATA----TCAAAT--------GTAAGCA----GTTA---CAA------GCAAATATTAAA--AA------------A---TG-T--T----A-TCA-----AGAATGC-TTTCA-A---T-A-TAAAG--AATATT-G-AAGTTAGTAAA----TTAT--AACAAGATCA-ATGTA-AACAAATTTAAAACA---TGAAAAACAT-TAA-AC-CGCA-ATG--AA-GCGTTTCACAA----CAAGCTC-CT-A--ATAAG-GT-TGTGC--CG-CGCGC-GT---CA-AA--ATACAAGCGCTAATA--A-AAAAA-TCCTGGG-GAGGA-ACACT
gi|4 : agtgttctccccaaggcccttaatagcgctgtattttaacccagcgctattgagttttcagcactggtgctatcacttacccagtgctttgctataagctaccagcactgtcgctataaagatcattagattgtgtattgtgatgggttaaatttatcttgtaagaaagtcatgtcaaagattttttcaccccaagcacattttatgttgcaaTAA---TGCAAT--------GTAAGCAA---GTTA----A-------GCAA-TATTAAA--AA---------A--AAT-TG-T--TATCAAGTGA-----A---TGC-TT-CA-A---T-AATAAAC--AATATTGA-AACTTAGTTAA--ACTTAT--ACAAAGATCA--TGTA-AACAAATTTCAA-C---ATGAAAAATAT-TA--ACTTGCAGGCGGTAC-GCGTTCT-CACGAGACAAG--A-CT-GCTATAGGC-T-CGTCC--TG-CGCGCTTC---TA-AATTATAC-AGCGCT-ATA--A-AAAAT--CCTGGG-GA-GA-ACACTG
gi|1 : gagtgttctctaggccattttagcgctgtattttaaggcgctatgagtttcagcactgtgctatcactactcagtgtctgctataagtaccagcagtgtcctataaggatcaatagtagatctgtgtacttgtgatggttaaatatcctgtaagaagccatgctggtgtcaaagattttcccgccatagcacattttttgtgcagt--------GTAAGCA----GTTA---CATTATGTTATAT-TATTAGA--TAAGAGATTGAT--AAAATG-T--A--CAA-TCA-----A---T---------A---TGA-GAAACCTA-TATT-A-AACTTAGTAAGATATTTAT--ACAAAGATCATGTGTTGAACAAAATTTAAAAC--ATGAAGAAAAC-T------CTCA--CG--AG-A---------------AAG--CTCTAA--GTAA--GT-CTAGT--CG-CGCGC-TC---TA-AAT-AT-C-AGTGCT-ATC--A-AAAAA-TCCTGGG-GA-GATACACga
gi|10 : gttctgcccagacctttttaactgctgtattttcagcgctatcagagttttagcgctctgggctatactaccagcacgtctgctatgaagctacctgcgctgtcctatgagagaggatcagaatagattgtgtaatttgtgaatggttgagatatcttataaagaaggcatgtcttgagtgtcaatgatcaataatttctcaacccatagtcatttgaaatatgttgtaatcggattaatctctgaaatgccaggtggtagattttcaacaccgatctacccgcaccagagaaataggcctatataggcaacacataatggaatacccgtccgaaattcacacctttaggctttgaaaaccacttatagctctcctgtttataaggtcattggtcttgttaaaggaaacacacatactaattgtatcttaattacttcactcttaacctgccagcgtataagagtttttacttattgtctaattaacaggaggataacttgagtttaaatttattccaaaccataaacggttagctatcgtgtggtttaaaaacgacaatattagcggatgataactctcaacatgcaaatttgtaaacgtagattatctattttgttaatgaaaggtaaatatcatccaacagtccatgaagatctcacataagttattaaacttaataatggtatatgtaaaaatatagggggatagtattttggagagttttattatgacctatggatcagcatgaaatcatcgcggtgaggtaacaaagagttcattaaaactattatctcccgcgaggataagacaacggcttccatcacacgctgtgatatgcaaattgtgaactttctaaaacatggcttctaatataggcgttccagctaaaccacaaggtagagtcactgttcaaagtatgagacggagggagcattgattccctggacacctagctgtttaagatcaaaatttaacgcctaatactgcaatattactataagtaaaagattagaagtatggaacaattttatttcacgtttttttggtatacgtttgggtcatgtgttgattaagtaaaatgattgtgagtaattgaacggtgttatatagtaaccggttatataacctttaagtatttagttttagttgttcttttttctcttctatattataatcatatgcacgagggt--------GTAAGCA----GTTA---CA-------GCAA--ATTAAAAATA---------TTCA---TG-T--T---AA-TCATAATCA---TGC-TT-CA-AATAT-A-TAAAC--AGTATT-A-AACTTAGTAAA--TTTAATTAGCAAAGATCA-----------AATGTAAAACATGATAAAGAACAT-TAA-AC-CGCA-GCG--ACCGCGTTTT-CAG----CAAG--C-CT-A--GTAAG-GTCCGTGTTGCG-CGCGC-TT---CT-AA--ATAC-AGCGCT-ATCAAA-AAAAT--CCTGGG-GA-
gi|8 : actttcgannnnnnnnnnnnnnnnnnnnnnnnnttttttgtatatattacacagagggcacatctt--------GTAAGCA----GTTATTACA-------GCAA-TATTAGA--CA---------T--A---TGATTAT--CAA-TGA-----A---TGCTTT-CA-A---T---T-AAC--A-TA---AGAACTTAGTAAA----TTGT--ACCAAGATCA-GTG-T-AAACAATATTAAAC---ATGAAAAAC-----AAAC-CACA-GCG--AT-ACGTTTC-A------CAA------T-A--ATAAAGGT-CGTGT--CA-TGCGC-T----T--AA--ATAC-AGCGCA-TTA--C-AGAAT--CCTGGG-GA-GA-ACACT
gi|12 : gttctccccagggcccttacagcgcgttgctatatcagcgctatcaaaagtgaagagcactgtgctatgctatcagcactgtccctataaagacattagaaccgagcatAAAC--A-TATT-G-AACTTAGTCAA----TTAT--ACAAAGATCA-ATGTA-AACAAATTT-AAACA---TGAAAAACAT-TAA-AC-CGCA-GTG--AC-GCGTTTCACAA----CAAG--CTCT-C--ATAAG-GT-CGTGC--CG-CGCGC-TC---TA-AA---TAC-AACGCT-ATC--A-AAAAA-TCCTGGG-GA-GA-ACACTG
gi|9 : aGCGC-TG---TATAG--ACAC-AGCGCT-TT------AAGG-GCCTGGG-GA-GA-AC
gi|5 : GCGC-TGGGTTA-AA--ATAC-AGCGCT-ATT--A-AGGG--CCTTGGG-GA-GA-ACACTtatcagtgagagcactgtgctattgctatcagcactgtcctataaagatcaattagaaccgagcatgtaagcagttatacagcaatattagaatatgttatcaatgaatgctcaataaaactaatgatcttagtaaagtacaaagatcagtgtaaaacaatattaaacatgaaaaacaaacccgcagggatacgtttcacaataataaggtcgtgtcatgcgatttaaatacagcgctattacaaaatcctggggagaacactg
gi|4 : GCGC-CT---TA-AA--ATAC-AGCGCT--------AAAATGGCCT--A-GA-GA-ACACTtattgagttttcagcactggtgctatcacttacccagtgctttgctataagctaccagcactgtcgctataaagatcattagattgtgtattgtgatgggttaaatttatcttgtaagaaagtcatgtcaaagattttttcaccccaagcacattttatgttgcaattatatcaaatgtaagcagttacaagcaaatattaaaaaatgttatcaagaatgctttcaatataaagaatattgaagttagtaaattataacaagatcaatgtaaacaaatttaaaacatgaaaaacattaaaccgcaatgaagcgtttcacaacaagctcctaataaggttgtgccgcgcgcgtcaaaatacaagcgctaataaaaaaatcctggggaggaacact
gi|6 : gGCGC-TG---TAGAA--ATAC-AGCGC---TA--A-AAAGG-GCCTGGG-GA-GA-ACACTtatgagtttcagcactgtgctatcactactcagtgtctgctataagtaccagcagtgtcctataaggatcaatagtagatctgtgtacttgtgatggttaaatatcctgtaagaagccatgctggtgtcaaagattttcccgccatagcacattttttgtgcagttaatgcaatgtaagcaagttaagcaatattaaaaaaaattgttatcaagtgaatgcttcaataataaacaatattgaaacttagttaaacttatacaaagatcatgtaaacaaatttcaacatgaaaaatattaacttgcaggcggtacgcgttctcacgagacaagactgctataggctcgtcctgcgcgcttctaaattatacagcgctataaaaaatcctggggagaacactgga
gi|11 : GCGC-TG---TA-AA--GCAC-AGCGCT-TT------AAGG-GCCTGGG-GA-GA-ACAtattgagtttcagcacctgtgctatcacttaacagctgctgggctataagctaccagcactgttcctataaagatccaataagtgttattgctgatggttaaatatcttgtaagaaagtcatgtcaaagattttgcaccccttagcaatttatgttgcaattaatcatgacgttacatcaatattaaaactgttatcaagaatgctcacatataaacatatgaagttagtaaaattatacaaagatcaatgtaaacaaatttaacatagaaaacatataaaccgcaacgacgcgtttcacaaacaagctctaataggtcgttcgccgccctctaaatacagtgctatcaaagacctgggcgagaacactg
gi|13 : GCGC-TG---TA-AA--GCAC-AGCGCT-TT------AAGG-GCCTGGG-GA-Gtatcaagtgagagcactgtgctattgctatcagcactgtcctataaagatcaattagaaccgagcatgtaagcagttattacatcaatattaaaatatgttatcaatgaatgcttcaattaaacataatgaacttagtaaattgtacaaagatcagtgtaaacaatattaaacatgaaaaacaaacccgcagcaatacgtttcataataataaggtcaaatcctggggagaacactgg
gi|11 : CCTGGG-GA-GA-ACACTGtataaagtgagaggactgtgctattgctatcagcactgtcctataaagatcaattagaaccgagcatgtaagcagtta
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): AAATTACCATGTAAGAAGCCATGTCAGTGTCAATTTCAAAGTTTTTTCAGTCCATAGCACAGTGTACGTTGCAATCATATTCGAAAAATGTACAG
Unaligned ( gi|16 ): TCATATTCGAAAAATGTACAGTCGCTGAATAAAGGTAAAATTCCACGAAATCAACTGAAAATTTAATAAGTT
Unaligned ( gi|17 ): ATTACATGTACATGAAATCATCGATCTCACGTTTATAACTCGCAAAAATATCT
Unaligned ( gi|18 ): GTGTTCTCCCGGCCCAGACCCTTAAAGCGCTGTGCTTTACAGC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 99999999999999999999999999999999 2222 11 11 111111 6666666666666666666666666666666666 1111111111 111 1111 1 11111 11 11 11 1 33333333333333333333333333333333333333333333333333333333 2222 1 1 11 22 1 44444444444 44444444444444444444 22 22222 11111 1 1 1 22 11 444 1111111 111 1 5555555555555 1 333 1 222 11 22 2 11 1 4444 2 444444 333 11 22 1111 666666666666666666666666666 11 2222222 11 77777777777777777777 111 2 222222 1 11 333 2222 1 2 333333 3333 11 66666666666666666666 1 1 1 22222 1 2 2 1 11 2 555555 1 2 222 11 11 1 1 22 55555555555555555555555555555555555 1111 33333 1111111111 111111 2222 111 33333333333333333333 1111 222
lowQualScore : 4 5 66 666 4 66 4 99 66 66 99999999999999999999999999999999 4 4 5 0000 2 4 4 4 9999 4 4 66 88 1 4 00 8 8 8 6 55 77 3 666666 5555555555555555555555555555555555 9999999999 77 77 111 1 7777 66 0 44444 2 2 33 33 3 33 0 55555555555555555555555555555555555555555555555555555555 7777 0 0 33 55 0 66666666666 1 33333333333333333333 33 6 3 1 1 55555 88888 0 0 0 33 8 66 33 111 4 8888888 777 0 1 5555555555555 1 5 111 5 4 111 3 2 77 77 2 0 88 5 2222 3 1 0 1 6 3 444444 1 7 777 77 66 00 333 0000 3 6 1 1 333333333333333333333333333 5 6 6 3 6 0 1 0 1 8 8 0 11 6666666 44 00000000000000000000 2 44 999 3 6 1 999999 1 1 5 88 555 4 2 3333 5 0 888888 8888 3 4 88 88888888888888888888 5 2 5 3 5 2 2 66666 3 3 88 5 0 0 5 88 0 777777 5 0 66 3 2 2 000 2 88 88 5 5 2 77 99 77 5 33333333333333333333333333333333333 2222 66666 4 4 66 8 5555555555 4 4 66 777 4 444444 4 777 999999 4 9999 0 4 8 777 9 5555 4 88 4 8 8 1 4444 000 4 4 4 55 66 88888888888888888888 55 4 4 4 4 66 4 9999 55 4 4 4 4 222 7777 3 3 4
lowQualScore : . . .. ... . .. . .. .. .. ................................ . . . .... . . . . .... . . .. .. . . .. . . . . .. .. . ...... .................................. .......... .. .. ... . .... .. . ..... . . .. .. . .. . ........................................................ .... . . .. .. . ........... . .................... .. . . . . ..... ..... . . . .. . .. .. ... . ....... ... . . ............. . . ... . . ... . . .. .. . . .. . .... . . . . . . ...... . . ... .. .. .. ... .... . . . . ........................... . . . . . . . . . . . . .. ....... .. .................... . .. ... . . . ...... . . . .. ... . . .... . . ...... .... . . .. .................... . . . . . . . ..... . . .. . . . . .. . ...... . . .. . . . ... . .. .. . . . .. .. .. . ................................... .... ..... . . .. . .......... . . .. ... . ...... . ... ...... . .... . . . ... . .... . .. . . . . .... ... . . . .. .. .................... .. . . . . .. . .... .. . . . . ... .... . . .
lowQualScore : 2 0 11 888 4 11 4 33 11 33 22222222222222222222222222222222 4 4 7 3333 4 4 4 4 4444 4 4 11 66 0 4 66 0 0 0 7 88 44 0 444444 1111111111111111111111111111111111 0000000000 99 99 777 4 9999 99 0 22222 5 5 88 88 2 88 0 55555555555555555555555555555555555555555555555555555555 2222 0 0 88 00 0 88888888888 0 55555555555555555555 88 5 2 0 0 00000 88888 0 0 0 22 8 55 22 222 0 5555555 555 0 0 3333333333333 0 0 000 0 0 555 0 5 55 55 5 0 55 5 5555 0 0 7 0 7 3 333333 0 3 333 33 00 00 666 7777 3 7 0 0 000000000000000000000000000 7 7 7 2 7 8 0 8 0 0 0 8 88 0000000 44 22222222222222222222 5 22 777 3 7 0 000000 0 0 5 55 000 0 5 0000 5 0 000000 5555 0 0 00 55555555555555555555 5 5 5 0 0 5 5 00000 0 0 00 5 0 0 5 00 0 555555 5 0 55 0 5 5 000 5 55 55 0 0 5 55 22 99 7 55555555555555555555555555555555555 5555 66666 4 4 11 9 4444444444 4 4 11 333 4 888888 4 888 888888 0 4444 8 0 0 000 8 7777 0 88 0 0 8 1 2222 222 0 0 0 55 33 77777777777777777777 55 0 0 0 0 11 4 5555 55 0 0 0 9 666 7777 6 6 0
consensus : AGTGTTCTCCCCAGGGC--CCTTN-TAGC-GC--TG-TATTTT-AC--AGCGCTATC-GAGTTTTCAGCG-CT--G-TGCTATCACT--AC--AGC-GC-TGTGCTAT-N--GCTACCAGCACTG-TC-C-TATAAA----GAT-CA-AT--TAGAACCGNG-CA--TTG-TGA-TGG-TTAA-AT--ATCTTGTAAG-GAAGCCA------TGTCA-G------------AG---------------A-TTTTTC-----ACC--C--CAT--AGCA-CATTT----TATGTTGC--A-TCGGACTA--TTTTTAACTCTCCT--GAAACGCCAGGTGG--TAGA-TTTT---CA-C------ACCT-G----------AT----CTACA-GGG-------CC-GCACATCG-CGGAA-ATCCGTC-GAA--ATTC-CACACC-TT--T------T-GAAAAC-----AC----GGCCCC---GTTT--CANGGATCCTTGGTTTTGTT-----AAAN--AACAA-ACA-ACT-AATGTGTGTTGTTAATTAAC-TTCACTC--AACCTGCANG--C-T--ATA---G-TTGTT-CTTA-T---GCCTAATTAACAGGAGGATAACTTGAGTTNAAATTTATNCNAAACNACAAACTTGGTTAGNCATGCGTGTGGTTTAAAAACGACAATATTAGCATAGGGANGATCGCTTNCCAACAT-CAAAT---CGAAAGTAGATTA---ATCTCGTT-AAT-GAAACAGTCGCTGAAT-AAAGGTNA---AATT--TCATGAAATTA-A-T--AAAAATTT-A-ATAAGTT-TTAAACTTAATAAATGTTA-T-TGTAA-TAAATA-------AT-GAGT------------A-CTT---AGAGTTTTATTATGGCCTATGGATCA-CATGAAATCATCGCGGTGAGGTAACNAAGANTTCATTAAAACTCACANTATCTCNCGCGAGGATAAGACAAACGGCTTCCATCACACGCTTGTGTGATCAATTGCAAATTGTGANCTTCCTANAACATGGCTTCTAATATAGGCGTTCCAGCTAAGCCACAAGGTAGANTCACTGTTCNAGGTATGAGACNGANGGAGCACTGATTCCCGGGACACCTNGCTGTTTNNGATCAAAGTTTAACGCCTAATACCTGCAAATATTACTGTAGGTAAAAGATTATGAAGTATGGGTTTTGAACAATTTTATTTACACNNTTNTTTNGTATACGTTTGGNTCATNTGTTGATTAAGTAAAATGATTGTGANTAATTGGTAAC--TGTC--C-TATAG-AA--GATCTTATAA---TTAA--AA--------GTAAGCA----GTTA--T--CA-GCAA-TATTA--AA-A-----TA---TG-TTA-TCA--A-TGAA-TGCT----T-CA-A---TA-T---AAA-C--A-TATTGAA-CTTAGT-AA---ATTTA--TA-CAAAGATCA-GTG-TAAACAAATNTTAAACA--ATGAAAAACAT-TAA-AC-CGCAG-CG--A-CGCGTTTC-C--A-C-----AAG--C-CTA--A-T-AAG-GT-CGTGT--CG-CGCGCTT-TAAA--ATA-C-AGCGCT-ATCAAAAAAT-CCTG----GG-GA-GA-ACACTG
Reference ( family-1486 ) : AGTGTTCCCCCCAGGGC--CCTTN-TAGC-GC--TG-TATTTTTAC--AGCGCTATC-GAGTTTTCAGCG-CT--G-TGCTATCACT--AC--AGC-GC-TCTGCTAT-N--GCTACCAGCGCTG-TC-C-TATAAA----GAT-CA-AT--TAGAACCGNG-CA--TTG-TGA-TGG-TTAA-AT--ATCTTGTAAG-GAAGTCA------TGTCN-G------------AG---------------A-TTTTTC-----ACC--C--CAT--AGCA-CATTT----TATGTTGC--A-TCGGACTA--TTTTTAACTCTCCT--GAAACGCCAGGTGG--TAGA-TTTT---CA-C------ACCT-G----------AT----CTAC------------CC-GCACATCG-CGAAA-ATCCGTC-GAA--ATTC-CACACC-TT--T------T-GAAANC-----AC----GGCTCC---GTTT--CACGGATCNTTGNTTTTGTT-----AAAN--AACAA-ACA-ACT-AAT-TGTATTGTTAATTAAC-TTCACT---AACCTGCATG--C-T--ATA---G-TTNTTACTTATT---GTCTAANTAACAGGAGNNTAACTTGAGTTTAAATTTATTCCAAACCATAAAC--GGTTAGCTAT-CGTGTGGTTTAAAAACGACAATATTAGC----GGATGANCGCTTNCCAACATGCAAATTTGTAAANGTAGATTATCTATCGCGTTTGAT-GAAANAATCGCCGAGT-AAANGTNATCNAACN--TCATGAA--TA-A-T--AAAAATTT-A-ATAAGTT-TTAAACNTAATAAATGNTA-T-TGTAA-TAAATA-------AT-GAGT------------A-CTT---AGAGTTTTATTATGGCCTNTGNATCAGCATGAAATCATCGCNGTGAGGTAACNAAGANTTCATTAAAACT---ATTATCTCCCGCGAGGATAAGAC-AACGGCTTCCATCACACGC---TGTGAT-A--TGCAAATTGTGAACTTTCTAAAACATGGCTTCTAATATAGGCGTTCCAGCTAAACCACAAGGTAGAGTCACTGTTCAAAGTATGAGACGGAGGGAGCATTGATTCCCTGGACACCTAGCTGTTTAAGATCAAAATTTAACGCCTAATA-CTGC-AATATTACTATAAGTAAAAGATTA-GAAGTATG------GAACAATTTTATTT-CACGTTTTTTTGGTATACGTTTGGGTCATGTGTTGATTAAGTAAAATGATTGTGAGTAATTG--AAC--TGTC--C-TATAGCAA--GATCTTATAA---TTAA--AA--------GTAAGCA----GTTA--T--CA-GCAA-TATTA--AA-A-----TA---TG-TTA-TCA--A-TNAA-TGCT----T-CA-A---TA-T---AAA-C--A-TATTGAA-CTTAGT-AA---ATTTA--TA-CAAAGATCA-GTG-TAAACAAATNTTAAACA--ATGAAAAACAT-TAA-AC-CGCAG-CG--A-CGCGTTTC-C--A-C-----AAG--C-CTA--A-T-AAG-GT-CGTGT--CG-CGCGCTN-TAAA--ATA-C-AGCGCT-ATNAAAAANG-CCTG----GG-GA-GA-ACACTG
gi|1 : GTTCTGCCCAGA-C--CTTTT-TAACTGC--TG-TATTTT--C--AGCGCTATCAGAGTTTT-AGCG-CTCTG-GGCTAT-ACT--ACC-AGC-ACGTCTGCTAT-GAAGCTACCTGCGCTG-TC-C-TATGAGAGAGGAT-CAGAA--TAGA-TTGTG-TAATTTG-TGAATGG-TTGAGAT--ATCTTATAAA-GAAGGCA------TGTCTTG------------AGTGTCAATGATCAATAA-TTTCTC-----AAC--C--CAT--AGT--CATTTGAAATATGTTGT--AATCGGA--------TTAA-TCTC-T--GAAATGCCAGGTGG--TAGA-TTTTCAACA-CCGATCTACCC-GCACCAGAGAAATAGGCCTATATAGG-------CA-ACACATAA-TGGAATACCCGTCCGAA--ATTC--ACACC-TT--TAGGCTTT-GAAAACCACTTAT----AGCTCTCCTGTTTA-TAAGG-TCATTGGTCTTGTT-----AAAGGAAACAC-ACATACT-AAT-TGTATC-TTAATTA-C-TTCACTCTTAACCTGCCAG--CGT--ATAAGAG-TTTTTACTTATT---GTCTAATTAACAGGAGGATAACTTGAGTTTAAATTTATTCCAAACCATAAAC--GGTTAGCTAT-CGTGTGGTTTAAAAACGACAATATTAGC----GGATGATAACTCTC-AACATGCAAATTTGTAAACGTAGATTATCTATTTTGTT-AAT-GAAAG---------GT-AAATATCATCCAACAGTCCATGAA---G-A-T-------CTC-ACATAAGTTATTAAACTTAATAA-TGGTA-TATGTAA--AAATATAGGGGGAT--AGT------------A-TTTTGGAGAGTTTTATTATGACCTATGGATCAGCATGAAATCATCGCGGTGAGGTAACAAAGAGTTCATTAAAACT---ATTATCTCCCGCGAGGATAAGAC-AACGGCTTCCATCACACGC---TGTGAT-A--TGCAAATTGTGAACTTTCTAAAACATGGCTTCTAATATAGGCGTTCCAGCTAAACCACAAGGTAGAGTCACTGTTCAAAGTATGAGACGGAGGGAGCATTGATTCCCTGGACACCTAGCTGTTTAAGATCAAAATTTAACGCCTAATA-CTGC-AATATTACTATAAGTAAAAGATTA-GAAGTATG------GAACAATTTTATTT-CACGTTTTTTTGGTATACGTTTGGGTCATGTGTTGATTAAGTAAAATGATTGTGAGTAATTG--AACGGTGTT--A-TATAGTAACCGGTTATATAACCTTTAA--
gi|1 : --------GTAAGCA----GTTACAT--TATGTTA-TATTATTAG-A-----TA---AG-AGA-TTG--A-TAAAATG-TACAAT-CA-A---TA-TGAGAAA-CCTA-TATTAAA-CTTAGT-AAGATATTTA--TA-CAAAGATCATGTGTTGAACAAAATTTAAAAC--ATGAAGA------AA-ACTCTCA--CG--A-------------G-A-----AAG--CTCTA--AGT-AA--GT-CTAGT--CG-CGCGCTC-T-AA--ATATC-AGTGCT-ATCAAAAAAT-CCTG----GG-GA-GATACACgtatttagttttagttgttcttttttctcttctatattataatcatatgcacgagggtgtaagcagttacattatgttatattattagataagagattgataaaatgtacaatcaatatgagaaacctatattaaacttagtaagatatttatacaaagatcatgtgttgaacaaaatttaaaacatgaagaaaactctcacgagaaagctctaagtaagtctagtcgcgcgctctaaatatcagtgctatcaaaaaatcctggggagatacac
gi|10 : gttctgcccagacctttttaactgctgtattttcagcgctatcagagttttagcgctctgggctatactaccagcacgtctgctatgaagctacctgcgctgtcctatgagagaggatcagaatagattgtgtaatttgtgaatggttgagatatcttataaagaaggcatgtcttgagtgtcaatgatcaataatttctcaacccatagtcatttgaaatatgttgtaatcggattaatctctgaaatgccaggtggtagattttcaacaccgatctacccgcaccagagaaataggcctatataggcaacacataatggaatacccgtccgaaattcacacctttaggctttgaaaaccacttatagctctcctgtttataaggtcattggtcttgttaaaggaaacacacatactaattgtatcttaattacttcactcttaacctgccagcgtataagagtttttacttattgtctaattaacaggaggataacttgagtttaaatttattccaaaccataaacggttagctatcgtgtggtttaaaaacgacaatattagcggatgataactctcaacatgcaaatttgtaaacgtagattatctattttgttaatgaaaggtaaatatcatccaacagtccatgaagatctcacataagttattaaacttaataatggtatatgtaaaaatatagggggatagtattttggagagttttattatgacctatggatcagcatgaaatcatcgcggtgaggtaacaaagagttcattaaaactattatctcccgcgaggataagacaacggcttccatcacacgctgtgatatgcaaattgtgaactttctaaaacatggcttctaatataggcgttccagctaaaccacaaggtagagtcactgttcaaagtatgagacggagggagcattgattccctggacacctagctgtttaagatcaaaatttaacgcctaatactgcaatattactataagtaaaagattagaagtatggaacaattttatttcacgtttttttggtatacgtttgggtcatgtgttgattaagtaaaatgattgtgagtaattgaacggtgttatatagtaaccggttatataacctttaagtatttagttttagttgttcttttttctcttctatattataatcatatgcacgagggt--------GTAAGCA----GTTA-----CA-GCAA--ATTA--AA-AATATTCA---TG-TTAATCATAA-TCA--TGCT----T-CA-AATATA-T---AAA-C--AGTATTAAA-CTTAGT-AA---ATTTAATTAGCAAAGATCA-----------AATGTAAAACATGATAAAGAACAT-TAA-AC-CGCAG-CG--ACCGCGTTTT-C--AGC-----AAG--C-CTA--G-T-AAG-GTCCGTGTTGCG-CGCGCTT-CTAA--ATA-C-AGCGCT-ATCAAAAAAATCCTG----GG-GA-
gi|11 : actttcgannnnnnnnnnnnnnnnnnnnnnnnnttttttgtatatattacacagagggcacatcttTGTTCTCCCCAGG-C--CCTTA-AAGC-GC--TG-TGCTTT-AC--AGCGCTATC-AAGT-----GAG-----------------------AGC-AC-TGTGCTAT-T--GCTATCAGCACTG-TC-C-TATAAA----GAT-CA-AT--TAGAACCGAG-CA--T
gi|11 : AC--TGTC--C-TATA--AA--GATC----AA---TTAG--AACCGAGCATGTAAGCA----GTTA--TTACA-TCAA-TATTA--AA-A-----TA---TG-TTA-TCA--A-TGAA-TGCT----T-CA-A---T--T---AAA-C--A-TAATGAA-CTTAGT-AA---A-TTG--TA-CAAAGATCA-GTG-TAAAC-AATATTAAAC---ATGAAAAACA---AA-CC-CGCAG-CA--A-TACGTTT--C--A-T-----AA------TA--A-T-AAG-GT-Cgtaagcagttattacatcaatattaaaatatgttatcaatgaatgcttcaattaaacataatgaacttagtaaattgtacaaagatcagtgtaaacaatattaaacatgaaaaacaaacccgcagcaatacgtttcataataataaggtcaaatcctggggagaacactgg
gi|11 : tgttctccccaggcccttaaagcgctgtgctttacagcgctatcaagtgagagcactgtgctattgctatcagc-CCTG----GG-GA-GA-ACACTGaaatcctggggagaacactgg
gi|12 : tgttctccccaggcccttaaagcgctgtgctttacagcgctatcaagtgagagcactgtgctattgctatcagcactgtcctataaagatcaattagaaccgagcatgtaagcagttattacatcaatattaaaatatgttatcaatgaatgcttcaattaaacataatgaacttagtaaattgtacaaagatcagtgtaaacaatattaaacatgaaaaacaaacccgcagcaatacgtttcataataataaggtcaaat---AAA-C--A-TATTGAA-CTTAGT-CA---ATT-A--TA-CAAAGATCA-ATG-TAAACAAAT-TTAAACA---TGAAAAACAT-TAA-AC-CGCAG-TG--A-CGCGTTTCACA-A-C-----AAG--CTCTC--A-T-AAG-GT-CGTGC--CG-CGCGCTC-T-AA--ATA-C-AACGCT-ATCAAAAAAT-CCTG----GG-GA-GA-ACACTGg
gi|13 : aCTCCCCAGG-C--CCTTA-AAGC-GC--TG-TGCTTT-AC--AGCGCTATA-AAGT-----GAG-----------------------AGG-AC-TGTGCTAT-T--GCTATCAGCACTG-TC-C-TATAAA----GAT-CA-AT--TAGAACCGAG-CA--T
gi|13 : AC--TGTC--C-TATA--AA--GATC----AA---TTAG--AACCGAGCATGTAAGCA----GTTA--gtaagcagtta
gi|14 : ctccccaggcccttaaagcgctgtgctttacagcgctataaagtgagaggactgtgctattgctatcagcACAGTCACTGAAT-AAAGGTAA---AATT--TC----------A-T--AAAAGTTG-A-ATAAG-T-TTAAACGTAATAAATGTTA-T-TGTAA-TGAATA-------AT-AAGT------------
gi|15 : tgtAA-ATT-ACCATGTAAG--AAGCCA------TGTCA-GTGTCAATTTCAAAG---------------T-TTTTTC-----AGT--C--CAT--AGCA-CAGTG----TACGTTGC--A-tacagattacatctattgcacttaa
gi|16 : ACAGTCGCTGAAT-AAAGGTAA---AATT--CCACGAAATCA-ACT--GAAAATTT-A-ATAAGTT-atcatattcgaaaaatgtacag
gi|18 : tcatattcgaaaaatgtGCTG-TAAA--GCA-C-AGCGCT-TT---AAGGG-TCTGGGCCGG-GA-GA-ACAC
gi|2 : AGTGTTTCTCCCAGAGCGACCTTT-TACC-GC--TG-TATTTTTTC--GGCGCTATC-GAGTTTTCAGCA-CT--C-TGCT-TCAAT--AC--AGC-GC-TCTGC-AT-A--GCTACCAGCGCT--TC-C-T-TAAA----GAT-CA-AT--TAGATTTGTG-CA--TTG-TGA-TGG-TTAA--T--ATCTTA-AAG-GAAGCCA-------GCCT-G------------AG---------------A-TTTTTC-----ACGTAC--CAT--AGCTTCATTT----TATGTTGC--A-TCAGATTA--TTTCCAACTCTCCT--GAAATGCCAGG-AG--TAGATTTTT---CA-C------ACCT-G----------AT----CT-C------------CA-GCACATC--TGGAA-ATCCGTC-GAA--ATTC-CACACT-TTAGT------TGGAAAAC-----ACTAGAAGCTCT---GTTT--CGAGGATCCTTAGCTTTGTT-----AAAT--AACAA-ACA-ACC-AATGTGTGTTCTTAATTAAC-TTCACTCA-AACCTGCAAG--C-T--ATA---G-TTGTT-CT------------ATTAA-AGGA---TAA-TTGAGTTAAAA---ATGCGAAA-AACAAACTTAATTAAGCATGCGTGTGGTT--AAAACAAC-ATATTAGCATAGGGAGAATCACTTCTCACCAT-CAAAT---CGAAAGTAGATTA---ATCTTGTTGAATCGAAAGAAT----GAAT-AAATGTCATCC-ACA--TCATGAAATTA-A-TGCAAAAATTT-A-ATAAGTT-TTAAACTTAATAAATGTTA-T-CG-AA-CAAATA-------ATCGAGT------------G-CTT---AGAGTTTTATTATGACA-ATGA--CA-CATGAAATCATCGCGGT------ACTAAAATTTT-TT--AACTCACAATATCTCACAC----AT-AGACAAACGGCTTCCATCACA-ACTTGTGTGATCAATTGCAAATTGTGACTTTCCTATA--ATGGCTTC--------------------AGCCAC-AGGTAGATTTAC-GTTCCAGGTAT-AGACTGATG-----CTGATTCCTGGAACACCTCGCTGTTTTTAATCAAAG-TTAACGCCTAATACCTGCAAATATTAC-GTAGGTAAA--ATTATGAAGTATGGGTTTTGAACAA-TTTATTTACACCATTGTTTTGTATATTTTT--TTCATTTGTTGAT--AGT--AAT-ATTGT-ATTAATTGGTAAC--TGTTAAC-TATAGTAA--GGTTTTATAA---TTAA--AA--------GTAAGCA----GTTA-----CA-GCAA-TATTA--AATA-----TA---TG-T---TCA--A-TCAA-TGCT----T-CA-A---TA-T---AAA-C--A-TATTAAA-CTTAGTAAA---ATTCA--TA-CAAAGATCA-GTG-TTAACCAATTTTAAGCA--ATGAAAAACAT-TAAGAC-CGCAG-CG--A-CGCGTTTC-C----C-----AAG--C-CTA--G-T-AAGCGT-CGTGT--CG-CGCGCTA-TAAA--ATA-C-AGCGCC-CTCAAAAATC-CCTG----GG-GA-GA-ACACTG
gi|3 : AAGAGAAGCCA------TGTCA-T------------TGTC-------------A-TTTTTTTAATAATC--CATCATTTAGCA--ATGTG---TATGTTACTAA-TCAGACTAATTTTTTAGCTCTTCTATGAAA-ACCAGGTGGCGTAGA-TTTTAT-CAGC------ACTTTG----------AT----TTGCAAGAGTACGAGCCC-G-ACACCGTCAAAA-ATCTGTC-AAATAATTTTCACACCCTT--T------T-GAAAAC-----AT----GATCTT---GTTTTTCATGGATCTTGATTTTTGTTTAAATAAAA--AGCAACACA-AATGAATGTGTAGTGTTAATTAACGTTCACTG--AACCTGCATGCTC-T--ATA---GCTTGTT--TTAATAAAGCTTAATTAA
gi|3 : GCTGAATTAAAGGTTA--AAATTG-TCATTAAATTACA-T--AAAA--TT-A-ATAAGGT-TTAAACACGTTAAATGATT-T-TGTAAATAAATA-------AT-AAGTTATCAGCTAGTCATCTA---AGAGTTTTGTAATGG-CTCT--ATCA-CATGAAATCAT-GCTGTattgggatgcatcctctctagattctgttagggaagattaactttacaactcttagcctccgacaaacaaagtaaaaacgctttgtatatcgaaaaattaacacgagtcgcgcgagtatgctgaattaaaggttaaaattgtcattaaattacataaaattaataaggtttaaacacgttaaatgattttgtaaataaataataagttatcagctagtcatctaagagttttgtaatggctctatcacatgaaatcatgctgtataaaat
gi|4 : aagagaagccatgtcattgtcatttttttaataatccatcatttagcaatgtgtatgttactaatcagactaattttttagctcttctatgaaaaccaggtggcgtagattttatcagcactttgatttgcaagagtacgagcccgacaccgtcaaaaatctgtcaaataattttcacacccttttgaaaacatgatcttgtttttcatggatcttgatttttgtttaaataaaaagcaacacaaatgaatgtgtagtgttaattaacgttcactgaacctgcatgctctatagcttgttttaataaagcttaattaaattgggatgcatcctctctagattctgttagggaagattaactttacaactcttagcctccgacaaacaaagtaaaaacgctttgtatatcgaaaaattaacacgagtcgcgcgagtatAGTGTTCTCT---AGGC--CATTT-TAGC-GC--TG-TATTTT-AA--GGCGCTAT--GAGTTT-CAGCA-CT--G-TGCTATCACT--ACTCAGT-G--TCTGCTAT-A--AGTACCAGCAGTG-TC-C-TATAAG----GAT-CA-ATAGTAGATCTGTG-TAC-TTG-TGA-TGG-TTAA-AT--ATCCTGTAA--GAAGCCATGCTGGTGTCA-A------------AG---------------A-TTTTCC------CG--C--CAT--AGCA-CATTT----TTTG-TGC--A-ataaaat
gi|4 : gTAA---TGCA--AT--------GTAAGCAA---GTTA------A-GCAA-TATTA--AA-A-----AAAATTG-TTA-TCA--AGTGAA-TGCT----T-CA-A---TAAT---AAA-C--AATATTGAAACTTAGTTAA---ACTTA--TA-CAAAGATCA--TG-TAAACAAAT-TTCAACA---TGAAAAATAT-TAA-CT-TGCAGGCGGTA-CGCGTTCT-C--A-CGAGACAAG--A-CTGCTA-T-AGG-CT-CGTCC--TG-CGCGCTTCTAAATTATA-C-AGCGCT-ATAAAAAAT--CCTG----GG-GA-GA-ACACTGgttaatgcaatgtaagcaagttaagcaatattaaaaaaaattgttatcaagtgaatgcttcaataataaacaatattgaaacttagttaaacttatacaaagatcatgtaaacaaatttcaacatgaaaaatattaacttgcaggcggtacgcgttctcacgagacaagactgctataggctcgtcctgcgcgcttctaaattatacagcgctataaaaaatcctggggagaacactgga
gi|5 : gagtgttctctaggccattttagcgctgtattttaaggcgctatgagtttcagcactgtgctatcactactcagtgtctgctataagtaccagcagtgtcctataaggatcaatagtagatctgtgtacttgtgatggttaaatatcctgtaagaagccatgctggtgtcaaagattttcccgccatagcacattttttgtgcagtAGTGTTCTCCCCAAGGC--CCTTAATAGC-GC--TG-TATTTTAACCCAGCGCTATT-GAGTTTTCAGCA-CT--GGTGCTATCACTT-ACCCAGT-GC-TTTGCTAT-AA-GCTACCAGCACTG-TCGC-TATAAA----GAT-CA--T--TAGA-TTGTG-TA--TTG-TGA-TGGGTTAA-ATTTATCTTGTAAG-AAAGTCA------TGTCA-A------------AG---------------ATTTTTTC-----ACC--C--CA---AGCA-CATTT----TATGTTGC--A-ga
gi|5 : TTATA----TCAA--AT--------GTAAGCA----GTTA--C--AA-GCAAATATTA--AA-A-----AA---TG-TTA-TCA--A--GAA-TGCT----TTCA-A---TA-T---AAAGA--A-TATTGAA-GTTAGT-AA---A-TTA--TA-ACAAGATCA-ATG-TAAACAAATTTAAAAC---ATGAAAAACAT-TAA-AC-CGCAA-TG--A-AGCGTTTCACA-A-C-----AAGCTC-CTA--A-T-AAG-GT-TGTGC--CG-CGCGCGT-CAAA--ATA-CAAGCGCTAATAAAAAAAT-CCTG----GG-GAGGA-ACACTattatatcaaatgtaagcagttacaagcaaatattaaaaaatgttatcaagaatgctttcaatataaagaatattgaagttagtaaattataacaagatcaatgtaaacaaatttaaaacatgaaaaacattaaaccgcaatgaagcgtttcacaacaagctcctaataaggttgtgccgcgcgcgtcaaaatacaagcgctaataaaaaaatcctggggaggaacact
gi|6 : agtgttctccccaaggcccttaatagcgctgtattttaacccagcgctattgagttttcagcactggtgctatcacttacccagtgctttgctataagctaccagcactgtcgctataaagatcattagattgtgtattgtgatgggttaaatttatcttgtaagaaagtcatgtcaaagattttttcaccccaagcacattttatgttgcaaAGTGTTCTCCCCAGGCC--CTTTT-TAGC-GC--TG-TATTTCTAC--AGCGCTATT-GAG-TTTCAGCACCT--G-TGCTATCACTTAAC--AGCTGC-TGGGCTATAA--GCTACCAGCACTGTTC-C-TATAAA----GATCCA-AT-----AA--GTGTTA--TTGCTGA-TGG-TTAA-AT--ATCTTGTAAG-AAAGTCA------TGTCA-A------------AG---------------A-TTTTGC-----ACC--C--CTT--AGCA--A-TT----TATGTTGC--A-
gi|6 : C--C-T-TAGCAA-----TTTATG----TTGC--AA--------TTAATCATGACGTTA-----CA-TCAA-TATTA--AA-A-----C----TG-TTA-TCA--A--GAA-TGCT------CACA---TA-T---AAA-C--A-TAT-GAA-GTTAGT-AA---AATTA--TA-CAAAGATCA-ATG-TAAACAAATTT--AAC---ATAGAAAACATATAA-AC-CGCAA-CG--A-CGCGTTTCACAAA-C-----AAG--CTCTA--A-T--AG-GT-CGT-T--CGCCGCCCTC-T-AA--ATA-C-AGTGCT-ATCAAAGA---CCTG----GGCGA-GA-ACACTGattaatcatgacgttacatcaatattaaaactgttatcaagaatgctcacatataaacatatgaagttagtaaaattatacaaagatcaatgtaaacaaatttaacatagaaaacatataaaccgcaacgacgcgtttcacaaacaagctctaataggtcgttcgccgccctctaaatacagtgctatcaaagacctgggcgagaacactg
gi|7 : agtgttctccccaggccctttttagcgctgtatttctacagcgctattgagtttcagcacctgtgctatcacttaacagctgctgggctataagctaccagcactgttcctataaagatccaataagtgttattgctgatggttaaatatcttgtaagaaagtcatgtcaaagattttgcaccTTGC--AATGGGACTA--TTTTTCACTCTCCT--GGG-CGCCGAGTGG--TAGA-TTTT----A-C------ACCT-G----------AT----CTAC------------CCCACACATCT-C-AAA-ATTTGTT-GAA--ATTC--ACACC-TT--T--------GAAATC-----AC----GCTCCC---AATT--CACGGATCCTTGATTTTGTT-----AAAC----CAA-ACA-ACT-AA--TGTGTTGTTAATT-AC------------CCTGCATG--C-TGAATA---G-T
gi|7 : accacctgtccaatatactAACGCTTGCCAATAT-CAAA-------AAGTAGA--A---ATCGCGTTTGAT----ACAATCGCCGAAT-AAAGGTAA---AATT--TCATGAA--TACA-T--GAAAATTTGA-AT-AGTT-TT-AATTTAATAAAT-TTATT-TGTAA-TAAACA-------AT-GAGT------------A-------AGAGTTTTATTATTGCCTgctgaaaaaacgaattattccccttgccgtttaaaacgcttgccaatatcaaaaagtagaaatcgcgtttgatacaatcgccgaataaaggtaaaatttcatgaatacatgaaaatttgaatagttttaatttaataaatttatttgtaataaacaatgagtaagagttttattattgccttaa
gi|8 : accacctgtccaatatactttgcaatgggactatttttcactctcctgggcgccgagtggtagattttacacctgatctaccccacacatctcaaaatttgttgaaattcacacctttgaaatcacgctcccaattcacggatccttgattttgttaaaccaaacaactaatgtgttgttaattaccctgcatgctgaatagtgctgaaaaaacgaattattccccttgccgtttaaGTTCTCCCCAGGGC--CCTTA-CAGC-GCGTTGCTATAT---C--AGCGCTATC-AAA-----AGTG--------------A----AG--AGC-AC-TGTGCTAT----GCTATCAGCACTG-TC-CCTATAAA----GAC----AT--TAGAACCGAG-CA--Ttaa
gi|8 : AC--TGTC--CCTATA--AA--GACATTAGAA---CCGAGCAT--------GTAAGCA----GTTA--TTACA-GCAA-TATTA--GACA-----TA---TGATTA-TCA--A-TGAA-TGCT----TTCA-A---T--T---AA--C--A-TAA-GAA-CTTAGT-AA---ATT-G--TA-CCAAGATCA-GTG-TAAAC-AATATTAAAC---ATGAAAAAC----AA-AC-CACAG-CG--A-TACGTTT--C--A-C-----AA------TA--A-TAAAG-GT-CGTGT--CA-TGCGCTT---AA--ATA-C-AGCGC--ATTACAGAAT-CCTG----GG-GA-GA-ACACTgtaagcagttattacagcaatattagacatatgattatcaatgaatgctttcaattaacataagaacttagtaaattgtaccaagatcagtgtaaacaatattaaacatgaaaaacaaaccacagcgatacgtttcacaataataaaggtcgtgtcatgcgcttaaatacagcgcattacagaatcctggggagaacact
gi|9 : gttctccccagggcccttacagcgcgttgctatatcagcgctatcaaaagtgaagagcactgtgctatgctatcagcGTTCTCCCCAGG-C--CCTTA-AAGC-GC--TG-TGTCTATAC--AGCGCTATC-A----------------G-TG----------AG--AGC-AC-TGTGCTAT-T--GCTATCAGCACTG-TC-C-TATAAA----GAT-CA-AT--TAGAACCGAG-CA--T
gi|9 : AC--TGTC--C-TATA--AA--GATC----AA---TTAG--AACCGAGCATGTAAGCA----GTTA--TA-CA-GCAA-TATTA--GA-A-----TA---TG-TTA-TCA--A-TGAA-TGC-----T-CA-A---TA-----AAA-C----TAATGAT-CTTAGT-AA---A---G--TA-CAAAGATCA-GTG-TAAAACAATATTAAAC---ATGAAAAACA---AA-CC-CGCAG-GG--A-TACGTTT--C--A-C-----AA------TA--A-T-AAG-GT-CGTGT--CA-TGCGATT-T-AA--ATA-C-AGCGCT-ATTACAAAAT-CCTG----GG-GA-GA-ACACTGgtaagcagttatacagcaatattagaatatgttatcaatgaatgctcaataaaactaatgatcttagtaaagtacaaagatcagtgtaaaacaatattaaacatgaaaaacaaacccgcagggatacgtttcacaataataaggtcgtgtcatgcgatttaaatacagcgctattacaaaatcctggggagaacactg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATTACATGTACATGAAATCATCGATCTCACGTTTATAACTCGCAAAAATATCT
Alignments
lowQualScore : 1111111111111111111111111111111 11111111111111111111111111111111111111
lowQualScore : 1 111111 0000000000000000000000000000000 222 11 11 111111 666666666666666666666666666666666 1111111111 111 1111 1 11111 11 11 11 33333 11 55555555555555555555555555555555555555 22222 1 1 11 22 1 3333333333 1 44444444444444444 11 1 1 22222 11111 1 1 1 11 11 222 1111111 111 1 1 555555555 2222 1 222 11 11 1 11 1 2222 1 333333 222 22222 3333333333333333 1 11 2222222 11 77777777777777777777 1 3333 1 222222 1 11 222 2222 1 1 1 222 11 1 11 66666666666666666666 1 1 1 22222 1 1 1 1 11 1 222222 1 1 111 1 1 1 111 22222222 11 1111 22 11111 444444444444 33333 1111111111 222222 2222 111 33333333333333333333 111
lowQualScore : 8888 7 55 777 4 55 4 555555 66 0000000000000000000000000000000 4 4 1 000 8 4 9999 4 4 66 88 1 4 00 8 8 8 6 55 77 666666 444444444444444444444444444444444 9999999999 77 77 111 1 7777 66 0 44444 2 2 33 33 3 33 77777 33 0 99999999999999999999999999999999999999 55555 0 0 33 55 0 6666666666 0 99999999999999999 2 33 0 1 3 2 0 55555 88888 0 0 0 22 8 66 33 666 1 8888888 777 0 3 666666666 3333 5 1 111 1 1 66 88 1 5 88 5 4444 1 0 1 6 3 888888 7 333 0 44444 888888 6 7 99 6 6 2222222222222222 1 3 6 6 11 1 0 1 8 8 0 11 6666666 44 00000000000000000000 0 3 2222 3 999999 1 1 5 88 000 1 1 3333 5 5 5 111 88 5 1 1 88 88888888888888888888 5 1 5 1 5 1 1 66666 2 1 22 5 5 5 5 88 5 999999 5 5 22 1 1 2 888 1 2 2 5 555 7 55555555 11 4444 88 55555 000000000000 4 77777 4 4 66 8 5555555555 4 4 66 66 4 000000 4 777 999999 4 9999 0 4 8 777 9 5555 4 88 4 8 8 1 4444 000 4 4 4 55 66 88888888888888888888 55 4 4 4 4 66 4 111 888 4 4 4 66 4 4 4
lowQualScore : .... . .. ... . .. . ...... .. ............................... . . . ... . . .... . . .. .. . . .. . . . . .. .. ...... ................................. .......... .. .. ... . .... .. . ..... . . .. .. . .. ..... .. . ...................................... ..... . . .. .. . .......... . ................. . .. . . . . . ..... ..... . . . .. . .. .. ... . ....... ... . . ......... .... . . ... . . .. .. . . .. . .... . . . . . ...... . ... . ..... ...... . . .. . . ................ . . . . .. . . . . . . .. ....... .. .................... . . .... . ...... . . . .. ... . . .... . . . ... .. . . . .. .................... . . . . . . . ..... . . .. . . . . .. . ...... . . .. . . . ... . . . . ... . ........ .. .... .. ..... ............ . ..... . . .. . .......... . . .. .. . ...... . ... ...... . .... . . . ... . .... . .. . . . . .... ... . . . .. .. .................... .. . . . . .. . ... ... . . . .. . . .
lowQualScore : 5555 5 55 999 0 55 0 888888 33 1111111111111111111111111111111 4 4 1 333 9 4 4444 4 4 11 66 0 4 66 0 0 0 7 88 44 444444 111111111111111111111111111111111 0000000000 99 99 777 4 9999 99 0 22222 5 5 88 88 2 88 22222 22 8 00000000000000000000000000000000000000 22222 0 0 88 00 0 8888888888 0 00000000000000000 0 88 0 0 2 5 0 00000 88888 0 0 0 00 8 55 22 222 0 5555555 555 0 3 333333333 0000 0 0 555 0 0 00 55 0 0 55 5 0000 0 7 0 7 3 000000 3 333 7 00000 888888 7 5 22 7 7 7777777777777777 7 3 7 7 66 0 8 0 0 0 8 88 0000000 44 22222222222222222222 0 2 7777 3 000000 0 0 5 55 555 0 0 0000 5 5 0 000 00 5 0 0 00 55555555555555555555 5 0 5 0 0 0 0 00000 5 0 00 5 0 5 5 00 5 555555 5 5 00 0 0 5 555 0 3 3 0 000 3 00000000 00 0000 00 00000 444444444444 4 22222 4 4 11 9 4444444444 4 4 33 11 4 222222 4 888 888888 0 4444 8 0 0 000 8 7777 0 88 0 0 8 1 2222 222 0 0 0 55 33 77777777777777777777 55 0 0 0 0 11 4 777 000 4 4 4 33 0 0 4
consensus : AGTGTTCTCCC----CAGGGC--CCTTA-NAGC-GC--TG-TATTT-TA---CAGCGCTATC-GAGTTT-CAGCGC-T--G-TGCTATCACT--AC--AGC-GC-TGTGCTATN--GCTACCAGCACTGT-C-CTATAAA----GATC-A-AT--TAGAACCGNGC-A--TTG-TGA-TGG-TTAA-AT--ATCTTGTAAG-GAAGCCA------TGTCA-G------------AG---------------A-TTTTTC-----ACC--C--CAT--AGCA-CATTT----TATGTTGC--A-TCGGACTA--TTTTTAACTCTCCT--GAAACGCCAGGTGG--TAGATTTT--CAGCACCT-GATCTAC---------AG-----G-------GCC----------ACACATCG-CGGAA-ATCCGTC-GAA--ATTC-CACACC-TT--T------TG-AAAAC-----AC----GGC---CCCG--TTT-CANGGATCCTTGG-TTTTGT-----TAAAN--AACAA-ACA-ACT-AATGTGTGTTGTTAATTAAC-TTCACTC--AACCTGCANG--C-T--ATA---G-TTGTT-CT-AT---GCCTAATTAACAGGAGGATAACTTGAGTTNAAATTTATNCNAAACNACAAACTTGGTTAGNCATGCGTGTGGTTTAAAAACGACAATATTAGCATAGGGANGATCGCTTNCCAACAT-CAAATC---GAAAGTAGATTA---ATCTCGTT-AAT-GAAACAGTCGCTGAAT-AAAGGTAA--AA-TT-TCATGAAA---TTA-A-T--GAAAATTT-A-ATAAGTT-TTAAACTTAATAAATGTTA-T-TGTAA-TAAATA-------AT-GAGT------------A-CTT---AGAGTTTTATTATGGC-CTATGG--CA-CATGAAATCATCGCGGTGAGGTAACNAAGANTTCATTAAAACTCACANTATCTCNCGCGAGGATAAGACAAACGGCTTCCATCACACGCTTGTGTGATCAATTGCAAATTGTGANCTTCCTANAACATGGCTTCTAATATAGGCGTTCCAGCTAAGCCACAAGGTAGANTCACTGTTCNAGGTATGAGACNGANGGAGCACTGATTCCCGGGACACCTNGCTGTTTNNGATCAAAGTTTAACGCCTAATACCTGCAAATATTACTGTAGGTAAAAGATTATGAAGTATGGGTTTTGAACAATTTTATTTACACNNTTNTTTNGTATACGTTTGGNTCATNTGTTGATCAAGTGAAAT-ATTGTGANTAATTG-TA-----AC--TGTC--C-TATAG-AAGATCTTATAATTAA--AN--------GTAAGCA-GTTA--T--CA-GCAA-TATTA--AA-A-----TA---TG-TTA-TCAA-TGA--A-TGCT----T-CA-A---TA-T---AAA-C--A-TATTGAA-CTTAGT-AA---ATTTA--TA-CAAAGATCA-GTG-TAAACAAATNTTAAACA--ATGAAAAACAT-TAA-AC-CGCAG-CG--AC-GCGTTTC-C--A-C-----AAG--C-CTA--A-T-AAG-GTC-GTGT--CG-CGCGCTT-TAAA--ATA-C-AGCGCT-ATC-AAAAAATCCTGGG-GA-GA-ACACTG
Reference ( family-1486 ) : AGTGTTCTCCC----CAGGGC--CCTTN-TAGC-GC--TG-TATTT-TA---CAGCGCTATC-GAGTTTTCAGCGC-T--G-TGCTATCACT--AC--AGC-GC-TGTGCTATN--GCTACCAGCACTGT-C-CTATAAA----GATC-A-AT--TAGAACCGNGC-A--TTG-TGA-TGG-TTAA-AT--ATCTTGTAAG-GAAGCCA------TGTCA-G------------AG---------------A-TTTTTC-----ACC--C--CAT--AGCA-CATTT----TATGTTGC--A-TCGGACTA--TTTTTAACTCTCCT--GAAACGCCAGGTGG--TAGATTTT--CA-CACCT-GATCTAC---------AG-----G-------GCC----------GCACATCG-CGGAA-ATCCGTC-GAA--ATTC-CACACC-TT--T------TG-AAAAC-----AC----GGC---CCCG--TTT-CANGGATCCTTGG-TTTTGT-----TAAAN--AACAA-ACA-ACT-AATGTGTGTTGTTAATTAAC-TTCACTC--AACCTGCANG--C-T--ATA---G-TTGTT-CTTAT---GCCTAATTAACAGGAGGATAACTTGAGTTNAAATTTATNCNAAACNACAAACTTGGTTAGNCATGCGTGTGGTTTAAAAACGACAATATTAGCATAGGGANGATCGCTTNCCAACAT-CAAATC---GAAAGTAGATTA---ATCTCGTT-AAT-GAAACAGTCGCTGAAT-AAAGGTNA--AA-TT-TCATGAAA---TTA-A-T--AAAAATTT-A-ATAAGTT-TTAAACTTAATAAATGTTA-T-TGTAA-TAAATA-------AT-GAGT------------A-CTT---AGAGTTTTATTATGGC-CTATGGATCA-CATGAAATCATCGCGGTGAGGTAACNAAGANTTCATTAAAACTCACANTATCTCNCGCGAGGATAAGACAAACGGCTTCCATCACACGCTTGTGTGATCAATTGCAAATTGTGANCTTCCTANAACATGGCTTCTAATATAGGCGTTCCAGCTAAGCCACAAGGTAGANTCACTGTTCNAGGTATGAGACNGANGGAGCACTGATTCCCGGGACACCTNGCTGTTTNNGATCAAAGTTTAACGCCTAATACCTGCAAATATTACTGTAGGTAAAAGATTATGAAGTATGGGTTTTGAACAATTTTATTTACACNNTTNTTTNGTATACGTTTGGNTCATNTGTTGATTAAGTAAAATGATTGTGANTAATTGGTA-----AC--TGTC--C-TATAG-AAGATCTTATAATTAA--AA--------GTAAGCA-GTTA--T--CA-GCAA-TATTA--AA-A-----TA---TG-TTA-TCAA-TGA--A-TGCT----T-CA-A---TA-T---AAA-C--A-TATTGAA-CTTAGT-AA---ATTTA--TA-CAAAGATCA-GTG-TAAACAAATNTTAAACA--ATGAAAAACAT-TAA-AC-CGCAG-CG--AC-GCGTTTC-C--A-C-----AAG--C-CTA--A-T-AAG-GTC-GTGT--CG-CGCGCTT-TAAA--ATA-C-AGCGCT-ATC-AAAAAATCCTGGG-GA-GA-ACACTG
gi|1 : GTTCTGCC----CAGA-C--CTTTT-TAACTGC--TG-TATTT-T----CAGCGCTATCAGAGTTTT-AGCGC-TCTG-GGCTAT-ACT--ACC-AGC-ACGTCTGCTATGAAGCTACCTGCGCTGT-C-CTATGAGAGAGGATC-AGAA--TAGA-TTGTGT-AATTTG-TGAATGG-TTGAGAT--ATCTTATAAA-GAAGGCA------TGTCTTG------------AGTGTCAATGATCAATAA-TTTCTC-----AAC--C--CAT--AGT--CATTTGAAATATGTTGT--AATCGGA--------TTAA-TCTC-T--GAAATGCCAGGTGG--TAGATTTT--CAACACC--GATCTACCCGCACCAGAGAAATAG-------GCCTATATAGGCAACACATAA-TGGAATACCCGTCCGAA--ATTC--ACACC-TT--TAGGCTTTG-AAAACCACTTAT----AGCTCTCCTG--TTTATAAGG-TCATTGG-TCTTGT-----TAAAGGAAACAC-ACATACT-AAT-TGTATC-TTAATTA-C-TTCACTCTTAACCTGCCAG--CGT--ATAAGAG-TTTTTACTTATT--GTCTAATTAACAGGAGGATAACTTGAGTTTAAATTTATTCCAAACCATAAAC--GGTTAGCTAT-CGTGTGGTTTAAAAACGACAATATTAGC----GGATGATAACTCTC-AACATGCAAATTTGTAAACGTAGATTATCTATTTTGTT-AAT-GAAA----------------GGT-A--AA-TA-TCATCCAACAGTCC-A-T--GAAGATCTCACATAAGTTATTAAACTTAATAA-TGGTA-TATGTAA--AAATATAGGGGGAT--AGT------------A-TTTTGGAGAGTTTTATTATGAC-CTATGGATCAGCATGAAATCATCGCGGTGAGGTAACAAAGAGTTCATTAAAACT---ATTATCTCCCGCGAGGATAAGACAA-CGGCTTCCATCACACGCT---GTGAT--AT-GCAAATTGTGAACTTTCTAAAACATGGCTTCTAATATAGGCGTTCCAGCTAAACCACAAGGTAGAGTCACTGTTCAAAGTATGAGACGGAGGGAGCATTGATTCCCTGGACACCTAGCTGTTTAAGATCAAAATTTAACGCCTAATA-CTGC-AATATTACTATAAGTAAAAGATTA-GAAGTATG------GAACAATTTTATTT-CACGTTTTTTTGGTATACGTTTGGGTCATGTGTTGATTAAGTAAAATGATTGTGAGTAATTG--A-----ACGGTGTT--A-TATAG-
gi|1 : --------GTAAGCA-GTTACAT--TATGTTA-TATTATTAG-A-----TA---AG-AGA-TTGA-TAA--AATG-TACAAT-CA-A---TA-TGAGAAA-CCTA-TATTAAA-CTTAGT-AAGATATTTA--TA-CAAAGATCATGTGTTGAACAAAATTTAAAAC--ATGAAGA------AA-ACTCTCA--CG--A-------------G-A-----AAG--CTCTA--AGT-AA--GTC-TAGT--CG-CGCGCTC-T-AA--ATATC-AGTGCT-ATC-AAAAAATCCTGGG-GA-GATACACtaaccggttatataacctttaagtatttagttttagttgttcttttttctcttctatattataatcatatgcacgagggtgtaagcagttacattatgttatattattagataagagattgataaaatgtacaatcaatatgagaaacctatattaaacttagtaagatatttatacaaagatcatgtgttgaacaaaatttaaaacatgaagaaaactctcacgagaaagctctaagtaagtctagtcgcgcgctctaaatatcagtgctatcaaaaaatcctggggagatacac
gi|10 : gttctgcccagacctttttaactgctgtattttcagcgctatcagagttttagcgctctgggctatactaccagcacgtctgctatgaagctacctgcgctgtcctatgagagaggatcagaatagattgtgtaatttgtgaatggttgagatatcttataaagaaggcatgtcttgagtgtcaatgatcaataatttctcaacccatagtcatttgaaatatgttgtaatcggattaatctctgaaatgccaggtggtagattttcaacaccgatctacccgcaccagagaaataggcctatataggcaacacataatggaatacccgtccgaaattcacacctttaggctttgaaaaccacttatagctctcctgtttataaggtcattggtcttgttaaaggaaacacacatactaattgtatcttaattacttcactcttaacctgccagcgtataagagtttttacttattgtctaattaacaggaggataacttgagtttaaatttattccaaaccataaacggttagctatcgtgtggtttaaaaacgacaatattagcggatgataactctcaacatgcaaatttgtaaacgtagattatctattttgttaatgaaaggtaaatatcatccaacagtccatgaagatctcacataagttattaaacttaataatggtatatgtaaaaatatagggggatagtattttggagagttttattatgacctatggatcagcatgaaatcatcgcggtgaggtaacaaagagttcattaaaactattatctcccgcgaggataagacaacggcttccatcacacgctgtgatatgcaaattgtgaactttctaaaacatggcttctaatataggcgttccagctaaaccacaaggtagagtcactgttcaaagtatgagacggagggagcattgattccctggacacctagctgtttaagatcaaaatttaacgcctaatactgcaatattactataagtaaaagattagaagtatggaacaattttatttcacgtttttttggtatacgtttgggtcatgtgttgattaagtaaaatgattgtgagtaattgaacggtgttatatagtaaccggttatataacctttaagtatttagttttagttgttcttttttctcttctatattataatcatatgcacgagggt--------GTAAGCA-GTTA-----CA-GCAA--ATTA--AA-AATATTCA---TG-TTAATCA--TAATCA-TGCT----T-CA-AATATA-T---AAA-C--AGTATTAAA-CTTAGT-AA---ATTTAATTAGCAAAGATCA-----------AATGTAAAACATGATAAAGAACAT-TAA-AC-CGCAG-CG--ACCGCGTTTT-C--AGC-----AAG--C-CTA--G-T-AAG-GTCCGTGTTGCG-CGCGCTT-CTAA--ATA-C-AGCGCT-ATCAAAAAAATCCTGGG-GA-
gi|11 : actttcgannnnnnnnnnnnnnnnnnnnnnnnnttttttgtatatattacacagagggcacatcttTGTTCTCCC----CAGG-C--CCTTA-AAGC-GC--TG-TGCTT-TA---CAGCGCTATC-AAGT-----GAG-----------------------AGC-AC-TGTGCTATT--GCTATCAGCACTGT-C-CTATAAA----GATC-A-AT--TAGAACCGAGC-A--T
gi|11 : ATCAAGTGAGAGCACTGTG-CTA-TTGCTATCAGCAC--TGTC--C-TATA--AAGATC----AATTAG--AACCGAGCATGTAAGCA-GTTA--TTACA-TCAA-TATTA--AA-A-----TA---TG-TTA-TCAA-TGA--A-TGCT----T-CA-A---T--T---AAA-C--A-TAATGAA-CTTAGT-AA---A-TTG--TA-CAAAGATCA-GTG-TAAAC-AATATTAAAC---ATGAAAAACA---AA-CC-CGCAG-CA--AT-ACGTTT--C--A-T-----AA------TA--A-T-AAG-GTC-gtaagcagttattacatcaatattaaaatatgttatcaatgaatgcttcaattaaacataatgaacttagtaaattgtacaaagatcagtgtaaacaatattaaacatgaaaaacaaacccgcagcaatacgtttcataataataaggtcaaatcctggggagaacactgg
gi|11 : tgttctccccaggcccttaaagcgctgtgctttacagcgctAAATCCTGGG-GA-GA-ACACTGaaatcctggggagaacactgg
gi|12 : tgttctccccaggcccttaaagcgctgtgctttacagcgctatcaagtgagagcactgtgctattgctatcagcactgtcctataaagatcaattagaaccgagcatgtaagcagttattacatcaatattaaaatatgttatcaatgaatgcttcaattaaacataatgaacttagtaaattgtacaaagatcagtgtaaacaatattaaacatgaaaaacaaacccgcagcaatacgtttcataataataaggtc---AAA-C--A-TATTGAA-CTTAGT-CA---ATT-A--TA-CAAAGATCA-ATG-TAAACAAAT-TTAAACA---TGAAAAACAT-TAA-AC-CGCAG-TG--AC-GCGTTTCAC--AAC-----AAG--CTCTC--A-T-AAG-GTC-GTGC--CG-CGCGCTC-TAAA---TA-C-AACGCT-ATC-AAAAAATCCTGGG-GA-GA-ACACTGg
gi|13 : aCTCCC----CAGG-C--CCTTA-AAGC-GC--TG-TGCTT-TA---CAGCGCTATA-AAGT-----GAG-----------------------AGG-AC-TGTGCTATT--GCTATCAGCACTGT-C-CTATAAA----GATC-A-AT--TAGAACCGAGC-A--T
gi|14 : ACAGTCACTGAAT-AAAGGTAA--AA-TT-TCAT----------------AAAAGTTG-A-ATAAGTT-T-AAACGTAATAAATGTTA-T-TGTAA-TGAATA-------AT-AAGT------------gtaagcagtta
gi|15 : tgtAA-ATT-ACCATGTAAG--AAGCCA------TGTCA-GTGTCAATTTCAAAG---------------T-TTTTTC-----AGT--C--CAT--AGCA-CAGTG----TACGTTGC--A-tacagattacatctattgcacttaa
gi|16 : ACAGTCGCTGAAT-AAAGGTAA--AA-TT-CCACGAAA---TCA-ACT--GAAAATTT-A-ATAAGTT-atcatattcgaaaaatgtacag
gi|18 : tcatattcgaaaaatgtGTGTTCTCCCGGCCCAGA-C--CCTTA-AAGC-GC--TG-TGCTT-TA---CAGC
gi|2 : AGTGTTTCTCC----CAGAGCGACCTTT-TACC-GC--TG-TATTT-TTT--CGGCGCTATC-GAGTTTTCAGCAC-T--C-TGCT-TCAAT--AC--AGC-GC-TCTGC-ATA--GCTACCAGCGCT-T-C-CT-TAAA----GATC-A-AT--TAGATTTGTGC-A--TTG-TGA-TGG-TTAA--T--ATCTTA-AAG-GAAGCCA-------GCCT-G------------AG---------------A-TTTTTC-----ACGTAC--CAT--AGCTTCATTT----TATGTTGC--A-TCAGATTA--TTTCCAACTCTCCT--GAAATGCCAGG-AG--TAGATTTTT-CA-CACCT-GATCTCC---------AG---------------------------CACATC--TGGAA-ATCCGTC-GAA--ATTC-CACACT-TTAGT------TGGAAAAC-----ACTAGAAGC---TCTG--TTT-CGAGGATCCTTAG-CTTTGT-----TAAAT--AACAA-ACA-ACC-AATGTGTGTTCTTAATTAAC-TTCACTCA-AACCTGCAAG--C-T--ATA---G-TTGTT-CT-----------ATTAA----AGGATAA-TTGAGTTAAAA---ATGCGAAA-AACAAACTTAATTAAGCATGCGTGTGGTT--AAAACAAC-ATATTAGCATAGGGAGAATCACTTCTCACCAT-CAAATC---GAAAGTAGATTA---ATCTTGTTGAATCGAAAGAA----TGAAT-AAATGTCATCCA-CA-TCATGAAA---TTA-A-TGCAAAAATTT-A-ATAAGTT-TTAAACTTAATAAATGTTA-T-CG-AA-CAAATA-------ATCGAGT------------G-CTT---AGAGTTTTATTATGAC-A-ATGA--CA-CATGAAATCATCGCGGT------ACTAAAATTTT-TT--AACTCACAATATCTCACAC----AT-AGACAAACGGCTTCCATCACA-ACTTGTGTGATCAATTGCAAATTGTGACTTTCCTATA--ATGGCTTC--------------------AGCCAC-AGGTAGATTTAC-GTTCCAGGTAT-AGACTGATG-----CTGATTCCTGGAACACCTCGCTGTTTTTAATCAAAG-TTAACGCCTAATACCTGCAAATATTAC-GTAGGTAAA--ATTATGAAGTATGGGTTTTGAACAA-TTTATTTACACCATTGTTTTGTATATTTTT--TTCATTTGTTGAT--AGT--AAT-ATTGT-ATTAATTGGTA-----AC--TGTTAAC-TATAGTAAGGTTTTATAATTAA--AA--------GTAAGCA-GTTA-----CA-GCAA-TATTA--AATA-----TA---TG-T---TCAA-TCA--A-TGCT----T-CA-A---TA-T---AAA-C--A-TATTAAA-CTTAGTAAA---ATTCA--TA-CAAAGATCA-GTG-TTAACCAATTTTAAGCA--ATGAAAAACAT-TAAGAC-CGCAG-CG--AC-GCGTTTC-C----C-----AAG--C-CTA--G-T-AAGCGTC-GTGT--CG-CGCGCTA-TAAA--ATA-C-AGCGCC-CTC-AAAAATCCCTGGG-GA-GA-ACACTG
gi|3 : AAGAGAAGCCA------TGTCA-T------------TGTC-------------A-TTTTTTTAATAATC--CATCATTTAGCA--ATGTG---TATGTTACTAA-TCAGACTAATTTTTTAGCTCTTCTATGAAA-ACCAGGTGGCGTAGATTTTATCAGCACTTTGATTTGC---------AA-----GAGTACGAGCC----------CGACACCGTCAAAA-ATCTGTC-AAATAATTTTCACACCCTT--T------TG-AAAAC-----AT----GAT---CTTGTTTTT-CATGGAT-CTTGATTTTTGTTTAAATAAAA--AGCAACACA-AATGAATGTGTAGTGTTAATTAACGTTCACTG--AACCTGCATGCTC-T--ATA---GCTTGTT-TTAATAAAGCTTAATTAA
gi|3 : GCTGAATTAAAGGTTA--AAATTGTCATTAAA---TTACA-T--AAAA--TT-A-ATAAGGT-TTAAACACGTTAAATGATT-T-TGTAAATAAATA-------AT-AAGTTATCAGCTAGTCATCTA---AGAGTTTTGTAATGGCTCTAT----CA-CATGAAATCATattgggatgcatcctctctagattctgttagggaagattaactttacaactcttagcctccgacaaacaaagtaaaaacgctttgtatatcgaaaaattaacacgagtcgcgcgagtatgctgaattaaaggttaaaattgtcattaaattacataaaattaataaggtttaaacacgttaaatgattttgtaaataaataataagttatcagctagtcatctaagagttttgtaatggctctatcacatgaaatcatgctgtataaaat
gi|4 : aagagaagccatgtcattgtcatttttttaataatccatcatttagcaatgtgtatgttactaatcagactaattttttagctcttctatgaaaaccaggtggcgtagattttatcagcactttgatttgcaagagtacgagcccgacaccgtcaaaaatctgtcaaataattttcacacccttttgaaaacatgatcttgtttttcatggatcttgatttttgtttaaataaaaagcaacacaaatgaatgtgtagtgttaattaacgttcactgaacctgcatgctctatagcttgttttaataaagcttaattaaattgggatgcatcctctctagattctgttagggaagattaactttacaactcttagcctccgacaaacaaagtaaaaacgctttgtatatcgaaaaattaacacgagtcgcgcgagtatAGTGTTCTCT-------AGGC--CATTT-TAGC-GC--TG-TATTT-TA---AGGCGCTAT--GAGTTT-CAGCAC-T--G-TGCTATCACT--ACTCAGT-G--TCTGCTATA--AGTACCAGCAGTGT-C-CTATAAG----GATC-A-ATAGTAGATCTGTGT-AC-TTG-TGA-TGG-TTAA-AT--ATCCTGTAA--GAAGCCATGCTGGTGTCA-A------------AG---------------A-TTTTCC------CG--C--CAT--AGCA-CATTT----TTTG-TGC--A-gctgtataaaat
gi|4 : gTAATGCA--AT--------GTAAGCAAGTTA------A-GCAA-TATTA--AA-A-----AAAATTG-TTA-TCAAGTGA--A-TGCT----T-CA-A---TAAT---AAA-C--AATATTGAAACTTAGTTAA---ACTTA--TA-CAAAGATCA--TG-TAAACAAAT-TTCAACA---TGAAAAATAT-TAA-CT-TGCAGGCGGTAC-GCGTTCT-C--A-CGAGACAAG--A-CTGCTA-T-AGG-CTC-GTCC--TG-CGCGCTTCTAAATTATA-C-AGCGCT-AT--AAAAAATCCTGGG-GA-GA-ACACTGgttaatgcaatgtaagcaagttaagcaatattaaaaaaaattgttatcaagtgaatgcttcaataataaacaatattgaaacttagttaaacttatacaaagatcatgtaaacaaatttcaacatgaaaaatattaacttgcaggcggtacgcgttctcacgagacaagactgctataggctcgtcctgcgcgcttctaaattatacagcgctataaaaaatcctggggagaacactgga
gi|5 : gagtgttctctaggccattttagcgctgtattttaaggcgctatgagtttcagcactgtgctatcactactcagtgtctgctataagtaccagcagtgtcctataaggatcaatagtagatctgtgtacttgtgatggttaaatatcctgtaagaagccatgctggtgtcaaagattttcccgccatagcacattttttgtgcagtAGTGTTCTCCC----CAAGGC--CCTTAATAGC-GC--TG-TATTT-TAACCCAGCGCTATT-GAGTTTTCAGCAC-T--GGTGCTATCACTT-ACCCAGT-GC-TTTGCTATAA-GCTACCAGCACTGT-CGCTATAAA----GATC-A--T--TAGA-TTGTGT-A--TTG-TGA-TGGGTTAA-ATTTATCTTGTAAG-AAAGTCA------TGTCA-A------------AG---------------ATTTTTTC-----ACC--C--CA---AGCA-CATTT----TATGTTGC--A-ga
gi|5 : TTATA-TCAA--AT--------GTAAGCA-GTTA--C--AA-GCAAATATTA--AA-A-----AA---TG-TTA-TCAA--GA--A-TGCT----TTCA-A---TA-T---AAAGA--A-TATTGAA-GTTAGT-AA---A-TTA--TA-ACAAGATCA-ATG-TAAACAAATTTAAAAC---ATGAAAAACAT-TAA-AC-CGCAA-TG--AA-GCGTTTCACA-A-C-----AAGCTC-CTA--A-T-AAG-GTT-GTGC--CG-CGCGCGT-CAAA--ATA-CAAGCGCTAATA-AAAAAATCCTGGG-GAGGA-ACACTattatatcaaatgtaagcagttacaagcaaatattaaaaaatgttatcaagaatgctttcaatataaagaatattgaagttagtaaattataacaagatcaatgtaaacaaatttaaaacatgaaaaacattaaaccgcaatgaagcgtttcacaacaagctcctaataaggttgtgccgcgcgcgtcaaaatacaagcgctaataaaaaaatcctggggaggaacact
gi|6 : agtgttctccccaaggcccttaatagcgctgtattttaacccagcgctattgagttttcagcactggtgctatcacttacccagtgctttgctataagctaccagcactgtcgctataaagatcattagattgtgtattgtgatgggttaaatttatcttgtaagaaagtcatgtcaaagattttttcaccccaagcacattttatgttgcaaAGTGTTCTCCC----CAGGCC--CTTTT-TAGC-GC--TG-TATTTCTA---CAGCGCTATT-GAGTTT-CAGCACCT--G-TGCTATCACTTAAC--AGCTGC-TGGGCTATAA-GCTACCAGCACTGTTC-CTATAAA----GATCCA-AT-----AA--GTGTTA--TTGCTGA-TGG-TTAA-AT--ATCTTGTAAG-AAAGTCA------TGTCA-A------------AG---------------A-TTTTGC-----ACC--C--CTT--AGCA--A-TT----TATGTTGC--A-
gi|6 : -GTTA-----CA-TCAA-TATTA--AA-A-----C----TG-TTA-TCAA--GA--A-TGCT------CACA---TA-T---AAA-C--A-TAT-GAA-GTTAGT-AA---AATTA--TA-CAAAGATCA-ATG-TAAACAAATTT--AAC---ATAGAAAACATATAA-AC-CGCAA-CG--AC-GCGTTTCACAAA-C-----AAG--CTCTA--A-T--AG-GTC-GT-T--CGCCGCCCTC-T-AA--ATA-C-AGTGCT-ATC-AAAGA--CCTGGGCGA-GA-ACACTGattaatcatgacgttacatcaatattaaaactgttatcaagaatgctcacatataaacatatgaagttagtaaaattatacaaagatcaatgtaaacaaatttaacatagaaaacatataaaccgcaacgacgcgtttcacaaacaagctctaataggtcgttcgccgccctctaaatacagtgctatcaaagacctgggcgagaacactg
gi|7 : agtgttctccccaggccctttttagcgctgtatttctacagcgctattgagtttcagcacctgtgctatcacttaacagctgctgggctataagctaccagcactgttcctataaagatccaataagtgttattgctgatggttaaatatcttgtaagaaagtcatgtcaaagattttgcaccccttagcaatttatgttgcaattaatcatgacTTGC--AATGGGACTA--TTTTTCACTCTCCT--GGG-CGCCGAGTGG--TAGATTTT---A-CACCT-GATCTAC---------C---------------CC----------ACACATCT-CA-AA-ATTTGTT-GAA--ATTC--ACACC-TT--T-------G-AAATC-----AC----GCT---CCCA--ATT-CACGGATCCTTGA-TTTTGT-----TAAAC----CAA-ACA-ACT-AA--TGTGTTGTTAATT-AC------------CCTGCATG--C-TGAATA---G-T
gi|7 : accacctgtccaatatactCGCTTGCCAATAT-CAAA-------AAGTAGA--A---ATCGCGTT---T-GATACAATCGCCGAAT-AAAGGTAA--AA-TT-TCATGAA-----TACA-T--GAAAATTTGA-AT-AGTT-TT-AATTTAATAAAT-TTATT-TGTAA-TAAACA-------AT-GAGT------------A-------AGAGTTTTATTATTGC-CTgctgaaaaaacgaattattccccttgccgtttaaaacgcttgccaatatcaaaaagtagaaatcgcgtttgatacaatcgccgaataaaggtaaaatttcatgaatacatgaaaatttgaatagttttaatttaataaatttatttgtaataaacaatgagtaagagttttattattgccttaa
gi|8 : accacctgtccaatatactttgcaatgggactatttttcactctcctgggcgccgagtggtagattttacacctgatctaccccacacatctcaaaatttgttgaaattcacacctttgaaatcacgctcccaattcacggatccttgattttgttaaaccaaacaactaatgtgttgttaattaccctgcatgctgaatagtgctgaaaaaacgaattattccccttgccgtttaaaaGTTCTCCC----CAGGGC--CCTTA-CAGC-GCGTTGCTATAT------CAGCGCTATC-AAA-----AGTG-----------A-------AG--AGC-AC-TGTGCTAT---GCTATCAGCACTGTCC-CTATAAA----GAC----AT--TAGAACCGAGC-A--Ttaa
gi|8 : -----AC--TGTC--CCTATA--AAGACATTAGAACCGAGCAT--------GTAAGCA-GTTA--TTACA-GCAA-TATTA--GACA-----TA---TGATTA-TCAA-TGA--A-TGCT----TTCA-A---T--T---AA--C--A-TAA-GAA-CTTAGT-AA---ATT-G--TA-CCAAGATCA-GTG-TAAAC-AATATTAAAC---ATGAAAAAC----AA-AC-CACAG-CG--AT-ACGTTT--C--A-C-----AA------TA--A-TAAAG-GTC-GTGT--CA-TGCGCTT---AA--ATA-C-AGCGC--ATT-ACAGAATCCTGGG-GA-GA-ACACTgtaagcagttattacagcaatattagacatatgattatcaatgaatgctttcaattaacataagaacttagtaaattgtaccaagatcagtgtaaacaatattaaacatgaaaaacaaaccacagcgatacgtttcacaataataaaggtcgtgtcatgcgcttaaatacagcgcattacagaatcctggggagaacact
gi|9 : gttctccccagggcccttacagcgcgttgctatatcagcgctatcaaaagtgaagagcactgtgctatgctatcagcGTTCTCCC----CAGG-C--CCTTA-AAGC-GC--TG-TGTCTATA---CAGCGCTATC-A----------------G-TG----------AG--AGC-AC-TGTGCTATT--GCTATCAGCACTGT-C-CTATAAA----GATC-A-AT--TAGAACCGAGC-A--T
gi|9 : -----AC--TGTC--C-TATA--AAGATC----AATTAG--AACCGAGCATGTAAGCA-GTTA--TA-CA-GCAA-TATTA--GA-A-----TA---TG-TTA-TCAA-TGA--A-TGCT------CA-A---TA-----AAA-C----TAATGAT-CTTAGT-AA---A---G--TA-CAAAGATCA-GTG-TAAAACAATATTAAACA---TGAAAAACA---AA-CC-CGCAG-GG--AT-ACGTTTC----A-C-----AA------TA--A-T-AAG-GTC-GTGT--CA-TGCGATT-TAAA---TA-C-AGCGCT-ATT-ACAAAATCCTGGG-GA-GA-ACACTGgtaagcagttatacagcaatattagaatatgttatcaatgaatgctcaataaaactaatgatcttagtaaagtacaaagatcagtgtaaaacaatattaaacatgaaaaacaaacccgcagggatacgtttcacaataataaggtcgtgtcatgcgatttaaatacagcgctattacaaaatcctggggagaacactg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATTACATGTACATGAAATCATCGATCTCACGTTTATAACTCGCAAAAATATCT
Alignments
lowQualScore : 11111111111111111111111111111111111111
lowQualScore : 1 111111 999999999999999999999999999999999 222 11 11 111111 666666666666666666666666666666666 111111111 111 1111 1 11111 11 11 11 22222 11 55555555555555555555555555555555555555 22222 1 1 11 22 1 44444444444 44444444444444444 11 1 1 22222 11111 1 1 1 11 11 222 1111111 111 1 5555555555555 11111111 1 222 11 11 1 11 1 2222 1 333333 222 22222 2222222222222 1 11 7777777777777777777777777777777777 2222 1 222222 1 11 222 2222 1 1 1 222 11 1 11 66666666666666666666 1 1 1 22222 1 1 1 1 11 1 222222 1 1 111 222 111 1 1 55555555 11 1111 22 222 22 33333 1111111111 222222 2222 111 33333333333333333333 111
lowQualScore : 8888 7 55 666 4 55 4 555555 66 222222222222222222222222222222222 4 4 1 000 8 4 9999 4 4 66 88 1 4 00 8 8 8 1 6 55 77 666666 444444444444444444444444444444444 999999999 77 77 111 1 7777 66 0 44444 2 2 33 33 3 33 55555 33 0 11111111111111111111111111111111111111 55555 0 0 33 55 0 66666666666 99999999999999999 2 33 0 1 3 2 0 55555 88888 0 0 0 22 8 66 33 666 1 8888888 777 0 6666666666666 44444444 5 1 111 1 1 66 88 1 5 88 5 4444 1 0 1 6 3 888888 7 333 0 44444 888888 6 6 99 6 1 9999999999999 1 3 6 6 11 1 0 1 8 8 0 11 1111111111111111111111111111111111 0 5 8 0 2222 0 999999 1 1 5 88 000 1 1 3333 5 5 5 111 88 5 1 1 88 88888888888888888888 5 1 5 1 5 1 1 66666 2 1 22 5 5 5 5 88 5 999999 5 5 22 1 1 2 888 1 666 6 888 999 5 0 44444444 11 4444 88 111 3 33 33 1 4 77777 4 4 66 8 5555555555 4 4 66 66 4 000000 4 777 999999 4 9999 0 4 8 777 9 5555 4 88 4 8 8 1 4444 000 4 4 4 55 66 88888888888888888888 55 4 4 4 4 66 4 111 888 4 4 4 66 4 4 4
lowQualScore : .... . .. ... . .. . ...... .. ................................. . . . ... . . .... . . .. .. . . .. . . . . . .. .. ...... ................................. ......... .. .. ... . .... .. . ..... . . .. .. . .. ..... .. . ...................................... ..... . . .. .. . ........... ................. . .. . . . . . ..... ..... . . . .. . .. .. ... . ....... ... . ............. ........ . . ... . . .. .. . . .. . .... . . . . . ...... . ... . ..... ...... . . .. . . ............. . . . . .. . . . . . . .. .................................. . . . . .... . ...... . . . .. ... . . .... . . . ... .. . . . .. .................... . . . . . . . ..... . . .. . . . . .. . ...... . . .. . . . ... . ... . ... ... . . ........ .. .... .. ... . .. .. . . ..... . . .. . .......... . . .. .. . ...... . ... ...... . .... . . . ... . .... . .. . . . . .... ... . . . .. .. .................... .. . . . . .. . ... ... . . . .. . . .
lowQualScore : 5555 5 55 444 0 55 0 888888 33 777777777777777777777777777777777 4 4 1 333 9 4 4444 4 4 11 66 0 4 66 0 0 0 7 7 88 44 444444 111111111111111111111111111111111 666666666 99 99 777 4 9999 99 0 22222 5 5 88 88 2 88 22222 22 8 55555555555555555555555555555555555555 22222 0 0 88 00 0 88888888888 00000000000000000 0 88 0 0 2 5 0 00000 88888 0 0 0 00 8 55 22 222 0 5555555 555 0 0000000000000 88888888 0 0 555 0 0 00 55 0 0 55 5 0000 0 7 0 7 3 000000 3 333 7 00000 888888 7 7 22 7 0 8888888888888 7 3 7 7 66 0 8 0 0 0 8 88 0000000000000000000000000000000000 8 0 0 8 8888 0 000000 0 0 5 55 555 0 0 0000 5 5 0 000 00 5 0 0 00 55555555555555555555 5 0 5 0 0 0 0 00000 5 0 00 5 0 5 5 00 5 555555 5 5 00 0 0 5 555 0 888 5 555 000 5 0 22222222 00 0000 00 555 4 99 66 0 4 22222 4 4 11 9 4444444444 4 4 33 11 4 222222 4 888 888888 0 4444 8 0 0 000 8 7777 0 88 0 0 8 1 2222 222 0 0 0 55 33 77777777777777777777 55 0 0 0 0 11 4 777 000 4 4 4 33 0 0 4
consensus : AGTGTTCTCCC----CAGGGC--CCTTAN-AGC-GC--TG-TATTT-TA---CAGCGCTATC-GAGTTT-CAGCGC-T--G-TGCTATCACT--A--C--AGC-GC-TGTGCTATN--GCTACCAGCACTGT-C-CTATAAA----GATC-A-AT--TAGAACCGNGC-A--TTG-TGA-TGG-TTAA-AT--ATCTTGTAAG-GAAGCCA------TGTCA-G------------AG---------------A-TTTTTC-----AC--CC--CAT--AGC-ACATTT----TATGTTGC--A-TCGGACTA--TTTTTAACTCTCCT--GAAACGCCAGGTGG--TAGATTTT--CAACACCT-GATCTAC---------AG-----G-------GCC----------ACACATCG-CGGAA-ATCCGTC-GAA--ATTC-CACACC-TT--T------T-GAAAAC-----AC----GGC---CCCG--TTT-CANGGATCCTTGG-TTTTGT-----TAAAN--AACAA-ACA-ACT-AATGTGTGTTGTTAATTAAC-TTCACTC--AACCTGCANG--C-T--ATA---G-TTGTT--TT-AT---GCCTAATTAACAGGAGGATAACTTGAGTTNAAATTTATNCNAAACNACAAACTTGGTTAGNCATGCGTGTGGTTTAAAAACGACAATATTAGCATAGGGANGATCGCTTNCCAACAT-CAAATC---GAAAGTAGATTA---ATCTCGTT-AAT-GAAACAGTCGCTGAAT-AAAGGT-AA--AATT-TCATGAAA---TTA-A-TG--AAAATTT-A-ATAAGTT-TTAAACTTAATAAATGTTA-T-TGTAA-TAAATA-------AT-GAGT------------A-CTT---AGAGTTTTATTATGAC-CTATGG--CA-CATGAAATCATCGCGGTGAGGTAACNAAGANTTCATTAAAACTCACANTATCTCNCGCGAGGATAAGACAAACGGCTTCCATCACACGCTTGTGTGATCAATTGCAAATTGTGANCTTCCTANAACATGGCTTCTAATATAGGCGTTCCAGCTAAGCCACAAGGTAGANTCACTGTTCNAGGTATGAGACNGANGGAGCACTGATTCCCGGGACACCTNGCTGTTTNNGATCAAAGTTTAACGCCTAATACCTGCAAATATTACTGTAGGTAAAAGATTATGAAGTATGGGTTTTGAACAATTTTATTTACACNNTTNTTTNGTATACGTTTGGNTCATNTGTTGATCAAGTGAGAGC-ACTGTGACTAATT-GCTATCAGCAC--TGTC--C-TATAG-AAGATN--TTANAACCGAGCATGTAAGCA-GTTA--T--CA-GCAA-TATTA--AA-A-----TA---TG-TTA-TCAA-TGA--A-TGCT----T-CA-A---TA-T---AAA-C--A-TATTGAA-CTTAGT-AA---ATTTA--TA-CAAAGATCA-GTG-TAAACAAATNTTAAACA--ATGAAAAACAT-TAA-AC-CGCAG-CG--AC-GCGTTTC-C--A-C-----AAG--C-CTA--A-T-AAG-GTC-GTGT--CG-CGCGCTT-TAAA--ATA-C-AGCGCT-ATC-AAAAAATCCTGGG-GA-GA-ACACTG
Reference ( family-1486 ) : AGTGTTCTCCC----CAGGGC--CCTTAN-AGC-GC--TG-TATTT-TA---CAGCGCTATC-GAGTTT-CAGCGC-T--G-TGCTATCACT--A--C--AGC-GC-TGTGCTATN--GCTACCAGCACTGT-C-CTATAAA----GATC-A-AT--TAGAACCGNGC-A--TTG-TGA-TGG-TTAA-AT--ATCTTGTAAG-GAAGCCA------TGTCA-G------------AG---------------A-TTTTTC-----AC--CC--CAT--AGC-ACATTT----TATGTTGC--A-TCGGACTA--TTTTTAACTCTCCT--GAAACGCCAGGTGG--TAGATTTT--CAGCACCT-GATCTAC---------AG-----G-------GCC----------ACACATCG-CGGAA-ATCCGTC-GAA--ATTC-CACACC-TT--T------T-GAAAAC-----AC----GGC---CCCG--TTT-CANGGATCCTTGG-TTTTGT-----TAAAN--AACAA-ACA-ACT-AATGTGTGTTGTTAATTAAC-TTCACTC--AACCTGCANG--C-T--ATA---G-TTGTT--CT-AT---GCCTAATTAACAGGAGGATAACTTGAGTTNAAATTTATNCNAAACNACAAACTTGGTTAGNCATGCGTGTGGTTTAAAAACGACAATATTAGCATAGGGANGATCGCTTNCCAACAT-CAAATC---GAAAGTAGATTA---ATCTCGTT-AAT-GAAACAGTCGCTGAAT-AAAGGT-AA--AATT-TCATGAAA---TTA-A-TG--AAAATTT-A-ATAAGTT-TTAAACTTAATAAATGTTA-T-TGTAA-TAAATA-------AT-GAGT------------A-CTT---AGAGTTTTATTATGGC-CTATGG--CA-CATGAAATCATCGCGGTGAGGTAACNAAGANTTCATTAAAACTCACANTATCTCNCGCGAGGATAAGACAAACGGCTTCCATCACACGCTTGTGTGATCAATTGCAAATTGTGANCTTCCTANAACATGGCTTCTAATATAGGCGTTCCAGCTAAGCCACAAGGTAGANTCACTGTTCNAGGTATGAGACNGANGGAGCACTGATTCCCGGGACACCTNGCTGTTTNNGATCAAAGTTTAACGCCTAATACCTGCAAATATTACTGTAGGTAAAAGATTATGAAGTATGGGTTTTGAACAATTTTATTTACACNNTTNTTTNGTATACGTTTGGNTCATNTGTTGATCAAGTGAAA-T-ATTGTGANTAATT-G-TA-----AC--TGTC--C-TATAG-AAGATC--TTATAATTAA--ANGTAAGCA-GTTA--T--CA-GCAA-TATTA--AA-A-----TA---TG-TTA-TCAA-TGA--A-TGCT----T-CA-A---TA-T---AAA-C--A-TATTGAA-CTTAGT-AA---ATTTA--TA-CAAAGATCA-GTG-TAAACAAATNTTAAACA--ATGAAAAACAT-TAA-AC-CGCAG-CG--AC-GCGTTTC-C--A-C-----AAG--C-CTA--A-T-AAG-GTC-GTGT--CG-CGCGCTT-TAAA--ATA-C-AGCGCT-ATC-AAAAAATCCTGGG-GA-GA-ACACTG
gi|1 : GTTCTGCC----CAGA-C--CTTTTT-AACTGC--TG-TATTT-T----CAGCGCTATCAGAGTTT-TAGCGC-TCTG-GGCTAT-ACT--A--CC-AGC-ACGTCTGCTATGAAGCTACCTGCGCTGT-C-CTATGAGAGAGGATC-AGAA--TAGA-TTGTGT-AATTTG-TGAATGG-TTGAGAT--ATCTTATAAA-GAAGGCA------TGTCTTG------------AGTGTCAATGATCAATAA-TTTCTC-----AA--CC--CAT--AGT--CATTTGAAATATGTTGT--AATCGGA--------TTAA-TCTC-T--GAAATGCCAGGTGG--TAGATTTT--CAACACC--GATCTACCCGCACCAGAGAAATAG-------GCCTATATAGGCAACACATAA-TGGAATACCCGTCCGAA--ATTC--ACACC-TT--TAGGCTTT-GAAAACCACTTAT----AGCTCTCCTG--TTTATAAGG-TCATTGG-TCTTGT-----TAAAGGAAACAC-ACATACT-AAT-TGTATC-TTAATTA-C-TTCACTCTTAACCTGCCAG--CGT--ATAAGAG-TTTTTACTT-ATT--GTCTAATTAACAGGAGGATAACTTGAGTTTAAATTTATTCCAAACCATAAAC--GGTTAGCTAT-CGTGTGGTTTAAAAACGACAATATTAGC----GGATGATAACTCTC-AACATGCAAATTTGTAAACGTAGATTATCTATTTTGTT-AAT-GAAA----------------GGT-AA--A-TA-TCATCCAACAGTCC-A-TG--AAGATCTCACATAAGTTATTAAACTTAATAA-TGGTA-TATGTAA--AAATATAGGGGGAT--AGT------------A-TTTTGGAGAGTTTTATTATGAC-CTATGGATCAGCATGAAATCATCGCGGTGAGGTAACAAAGAGTTCATTAAAACT---ATTATCTCCCGCGAGGATAAGACAA-CGGCTTCCATCACACGCT---GTGAT--AT-GCAAATTGTGAACTTTCTAAAACATGGCTTCTAATATAGGCGTTCCAGCTAAACCACAAGGTAGAGTCACTGTTCAAAGTATGAGACGGAGGGAGCATTGATTCCCTGGACACCTAGCTGTTTAAGATCAAAATTTAACGCCTAATA-CTGC-AATATTACTATAAGTAAAAGATTA-GAAGTATG------GAACAATTTTATTT-CACGTTTTTTTGGTATACGTTTGGGTCATGTGTTGATTAAGTAAAA-TGATTGTGAGTAATT-G--A-----ACGGTGTT--A-TATAG-
gi|1 : GTAAGCA-GTTACAT--TATGTTA-TATTATTAG-A-----TA---AG-AGA-TTGA-TAA--AATG-TACAAT-CA-A---TA-TGAGAAA-CCTA-TATTAAA-CTTAGT-AAGATATTTA--TA-CAAAGATCATGTGTTGAACAAAATTTAAAAC--ATGAAGA------AA-ACTCTCA--CG--A-------------G-A-----AAG--CTCTA--AGT-AA--GTC-TAGT--CG-CGCGCTC-T-AA--ATATC-AGTGCT-ATC-AAAAAATCCTGGG-GA-GATACACtaaccggttatataacctttaagtatttagttttagttgttcttttttctcttctatattataatcatatgcacgagggtgtaagcagttacattatgttatattattagataagagattgataaaatgtacaatcaatatgagaaacctatattaaacttagtaagatatttatacaaagatcatgtgttgaacaaaatttaaaacatgaagaaaactctcacgagaaagctctaagtaagtctagtcgcgcgctctaaatatcagtgctatcaaaaaatcctggggagatacac
gi|10 : gttctgcccagacctttttaactgctgtattttcagcgctatcagagttttagcgctctgggctatactaccagcacgtctgctatgaagctacctgcgctgtcctatgagagaggatcagaatagattgtgtaatttgtgaatggttgagatatcttataaagaaggcatgtcttgagtgtcaatgatcaataatttctcaacccatagtcatttgaaatatgttgtaatcggattaatctctgaaatgccaggtggtagattttcaacaccgatctacccgcaccagagaaataggcctatataggcaacacataatggaatacccgtccgaaattcacacctttaggctttgaaaaccacttatagctctcctgtttataaggtcattggtcttgttaaaggaaacacacatactaattgtatcttaattacttcactcttaacctgccagcgtataagagtttttacttattgtctaattaacaggaggataacttgagtttaaatttattccaaaccataaacggttagctatcgtgtggtttaaaaacgacaatattagcggatgataactctcaacatgcaaatttgtaaacgtagattatctattttgttaatgaaaggtaaatatcatccaacagtccatgaagatctcacataagttattaaacttaataatggtatatgtaaaaatatagggggatagtattttggagagttttattatgacctatggatcagcatgaaatcatcgcggtgaggtaacaaagagttcattaaaactattatctcccgcgaggataagacaacggcttccatcacacgctgtgatatgcaaattgtgaactttctaaaacatggcttctaatataggcgttccagctaaaccacaaggtagagtcactgttcaaagtatgagacggagggagcattgattccctggacacctagctgtttaagatcaaaatttaacgcctaatactgcaatattactataagtaaaagattagaagtatggaacaattttatttcacgtttttttggtatacgtttgggtcatgtgttgattaagtaaaatgattgtgagtaattgaacggtgttatatagtaaccggttatataacctttaagtatttagttttagttgttcttttttctcttctatattataatcatatgcacgagggtGTAAGCA-GTTA-----CA-GCAA--ATTA--AA-AATATTCA---TG-TTAATCA--TAATCA-TGCT----T-CA-AATATA-T---AAA-C--AGTATTAAA-CTTAGT-AA---ATTTAATTAGCAAAGATCA-----------AATGTAAAACATGATAAAGAACAT-TAA-AC-CGCAG-CG--ACCGCGTTTT-C--AGC-----AAG--C-CTA--G-T-AAG-GTCCGTGTTGCG-CGCGCTT-CTAA--ATA-C-AGCGCT-ATCAAAAAAATCCTGGG-GA-
gi|11 : actttcgannnnnnnnnnnnnnnnnnnnnnnnnttttttgtatatattacacagagggcacatcttTGTTCTCCC----CAGG-C--CCTTAA-AGC-GC--TG-TGCTT-TA---CAGCGCTATC-AAGT-----GAG-------------------------AGC-AC-TGTGCTATT--GCTATCAGCACTGT-C-CTATAAA----GATC-A-AT--TAGAACCGAGC-A--T
gi|11 : ATCAAGTGAGAGC-ACTGTG-CTA-TT-GCTATCAGCAC--TGTC--C-TATA--AAGATCAATTAGAACCGAGCATGTAAGCA-GTTA--TTACA-TCAA-TATTA--AA-A-----TA---TG-TTA-TCAA-TGA--A-TGCT----T-CA-A---T--T---AAA-C--A-TAATGAA-CTTAGT-AA---A-TTG--TA-CAAAGATCA-GTG-TAAAC-AATATTAAAC---ATGAAAAACA---AA-CC-CGCAG-CA--AT-ACGTTT--C--A-T-----AA------TA--A-T-AAG-GTC-gtaagcagttattacatcaatattaaaatatgttatcaatgaatgcttcaattaaacataatgaacttagtaaattgtacaaagatcagtgtaaacaatattaaacatgaaaaacaaacccgcagcaatacgtttcataataataaggtcaaatcctggggagaacactgg
gi|11 : tgttctccccaggcccttaaagcgctgtgctttacagcgctAAATCCTGGG-GA-GA-ACACTGaaatcctggggagaacactgg
gi|12 : tgttctccccaggcccttaaagcgctgtgctttacagcgctatcaagtgagagcactgtgctattgctatcagcactgtcctataaagatcaattagaaccgagcatgtaagcagttattacatcaatattaaaatatgttatcaatgaatgcttcaattaaacataatgaacttagtaaattgtacaaagatcagtgtaaacaatattaaacatgaaaaacaaacccgcagcaatacgtttcataataataaggtc---AAA-C--A-TATTGAA-CTTAGT-CA---ATT-A--TA-CAAAGATCA-ATG-TAAACAAAT-TTAAACA---TGAAAAACAT-TAA-AC-CGCAG-TG--AC-GCGTTTCAC--AAC-----AAG--CTCTC--A-T-AAG-GTC-GTGC--CG-CGCGCTC-TAAA---TA-C-AACGCT-ATC-AAAAAATCCTGGG-GA-GA-ACACTGg
gi|13 : aCTCCC----CAGG-C--CCTTAA-AGC-GC--TG-TGCTT-TA---CAGCGCTATA-AAGT-----GAG-------------------------AGG-AC-TGTGCTATT--GCTATCAGCACTGT-C-CTATAAA----GATC-A-AT--TAGAACCGAGC-A--T
gi|14 : ACAGTCACTGAAT-AAAGGT-AA--AATT-TCATAAAA----------------GTTG-A-ATAAGTT-T-AAACGTAATAAATGTTA-T-TGTAA-TGAATA-------AT-AAG----------------TT---ACAG----ATTAC-AT-CTATTG--CA-Cgtaagcagtta
gi|15 : tgtAA-ATT-ACCATGTAAG--AAGCCA------TGTCA-GTGTCAATTTCAAAG---------------T-TTTTTC-----AG--TC--CAT--AGC-ACAGTG----TACGTTGC--A-ttaa
gi|16 : ACAGTCGCTGAAT-AAAGGT-AA--AATT-CCACGAAA---TCA-ACTG--AAAATTT-A-ATAAGTT-atcatattcgaaaaatgtacag
gi|18 : tcatattcgaaaaatgtGTGTTCTCCCGGCCCAGA-C--CCTTAA-AGC-GC--TG-TGCTT-TA---CAGC
gi|2 : AGTGTTTCTCC----CAGAGCGACCTTTT-ACC-GC--TG-TATTT-TTT--CGGCGCTATC-GAGTTTTCAGCAC-T--C-TGCT-TCAAT--A--C--AGC-GC-TCTGC-ATA--GCTACCAGCGCT-T-C-CT-TAAA----GATC-A-AT--TAGATTTGTGC-A--TTG-TGA-TGG-TT-A-AT--ATCTTA-AAG-GAAGCCA-------GCCT-G------------AG---------------A-TTTTTC-----ACGTAC--CAT--AGCTTCATTT----TATGTTGC--A-TCAGATTA--TTTCCAACTCTCCT--GAAATGCCAGG-AG--TAGATTTT--TCACACCT-GATCTCC---------AG---------------------------CACATC--TGGAA-ATCCGTC-GAA--ATTC-CACACT-TTAGT------TGGAAAAC-----ACTAGAAGC---TCTG--TTT-CGAGGATCCTTAG-CTTTGT-----TAAAT--AACAA-ACA-ACC-AATGTGTGTTCTTAATTAAC-TTCACTCA-AACCTGCAAG--C-T--ATA---G-TTGTT--CT-AT------TAA--------AGGATAA-TTGAGTTAAAA---ATGCGAAA-AACAAACTTAATTAAGCATGCGTGTGGTT--AAAACAAC-ATATTAGCATAGGGAGAATCACTTCTCACCAT-CAAATC---GAAAGTAGATTA---ATCTTGTTGAATCGAAAGAA----TGAAT-AAATGT-CATCCACA-TCATGAAA---TTA-A-TGCAAAAATTT-A-ATAAGTT-TTAAACTTAATAAATGTTA-T-CG-AA-CAAATA-------ATCGAGT------------G-CTT---AGAGTTTTATTATGAC-A-ATGA--CA-CATGAAATCATCGCGGT------ACTAAAATTTT-TT--AACTCACAATATCTCACAC----AT-AGACAAACGGCTTCCATCACA-ACTTGTGTGATCAATTGCAAATTGTGACTTTCCTATA--ATGGCTTC--------------------AGCCAC-AGGTAGATTTAC-GTTCCAGGTAT-AGACTGATG-----CTGATTCCTGGAACACCTCGCTGTTTTTAATCAAAG-TTAACGCCTAATACCTGCAAATATTAC-GTAGGTAAA--ATTATGAAGTATGGGTTTTGAACAA-TTTATTTACACCATTGTTTTGTATATTTTT--TTCATTTGTTGAT--AGT--AA-T-ATTGT-ATTAATTGG-TA-----AC--TGTTAAC-TATAGTAAGGTT--TTATAATTAA--AAGTAAGCA-GTTA-----CA-GCAA-TATTA--AATA-----TA---TG-T---TCAA-TCA--A-TGCT----T-CA-A---TA-T---AAA-C--A-TATTAAA-CTTAGTAAA---ATTCA--TA-CAAAGATCA-GTG-TTAACCAATTTTAAGCA--ATGAAAAACAT-TAAGAC-CGCAG-CG--AC-GCGTTTC-C----C-----AAG--C-CTA--G-T-AAGCGTC-GTGT--CG-CGCGCTA-TAAA--ATA-C-AGCGCC-CTC-AAAAATCCCTGGG-GA-GA-ACACTG
gi|3 : AAGAGAAGCCA------TGTCA-T------------TGTC-------------A-TTTTTTTAATAAT--CCATCATTTAGC-A-ATGTG---TATGTTACTAA-TCAGACTAATTTTTTAGCTCTTCTATGAAA-ACCAGGTGGCGTAGATTTTATCAGCACTTTGATTTGC---------AA-----GAGTACGAGCC----------CGACACCGTCAAAA-ATCTGTC-AAATAATTTTCACACCCTT--T------T-GAAAAC-----AT----GAT---CTTGTTTTT-CATGGAT-CTTGATTTTTGTTTAAATAAAA--AGCAACACA-AATGAATGTGTAGTGTTAATTAACGTTCACTG--AACCTGCATGCTC-T--ATA---GCTTGTT--TTAATAAAGCTTAATTAA
gi|3 : GCTGAATTAAAGGTTAA--AATTGTCATTAAA---TTACA-TA--AAA--TT-A-ATAAGGT-TTAAACACGTTAAATGATT-T-TGTAAATAAATA-------AT-AAGTTATCAGCTAGTCATCTA---AGAGTTTTGTAATGGCTCTAT----CA-CATGAAATCATattgggatgcatcctctctagattctgttagggaagattaactttacaactcttagcctccgacaaacaaagtaaaaacgctttgtatatcgaaaaattaacacgagtcgcgcgagtatgctgaattaaaggttaaaattgtcattaaattacataaaattaataaggtttaaacacgttaaatgattttgtaaataaataataagttatcagctagtcatctaagagttttgtaatggctctatcacatgaaatcatgctgtataaaat
gi|4 : aagagaagccatgtcattgtcatttttttaataatccatcatttagcaatgtgtatgttactaatcagactaattttttagctcttctatgaaaaccaggtggcgtagattttatcagcactttgatttgcaagagtacgagcccgacaccgtcaaaaatctgtcaaataattttcacacccttttgaaaacatgatcttgtttttcatggatcttgatttttgtttaaataaaaagcaacacaaatgaatgtgtagtgttaattaacgttcactgaacctgcatgctctatagcttgttttaataaagcttaattaaattgggatgcatcctctctagattctgttagggaagattaactttacaactcttagcctccgacaaacaaagtaaaaacgctttgtatatcgaaaaattaacacgagtcgcgcgagtatAGTGTTCTCT-------AGGC--CATTTT-AGC-GC--TG-TATTT-TA---AGGCGCTAT--GAGTTT-CAGCAC-T--G-TGCTATCACT--ACTC--AGT-G--TCTGCTATA--AGTACCAGCAGTGT-C-CTATAAG----GATC-A-ATAGTAGATCTGTGT-AC-TTG-TGA-TGG-TTAA-AT--ATCCTGTAA--GAAGCCATGCTGGTGTCA-A------------AG---------------A-TTTTCC------C--GC--CAT--AGC-ACATTT----TTTG-TGC--A-gctgtataaaat
gi|4 : gTAATGCA--ATGTAAGCAAGTTA------A-GCAA-TATTA--AA-A-----AAAATTG-TTA-TCAAGTGA--A-TGCT----T-CA-A---TAAT---AAA-C--AATATTGAAACTTAGTTAA---ACTTA--TA-CAAAGATCA--TG-TAAACAAAT-TTCAACA---TGAAAAATAT-TAA-CT-TGCAGGCGGTAC-GCGTTCT-C--A-CGAGACAAG--A-CTGCTA-T-AGG-CTC-GTCC--TG-CGCGCTTCTAAATTATA-C-AGCGCT-AT--AAAAAATCCTGGG-GA-GA-ACACTGgttaatgcaatgtaagcaagttaagcaatattaaaaaaaattgttatcaagtgaatgcttcaataataaacaatattgaaacttagttaaacttatacaaagatcatgtaaacaaatttcaacatgaaaaatattaacttgcaggcggtacgcgttctcacgagacaagactgctataggctcgtcctgcgcgcttctaaattatacagcgctataaaaaatcctggggagaacactgga
gi|5 : gagtgttctctaggccattttagcgctgtattttaaggcgctatgagtttcagcactgtgctatcactactcagtgtctgctataagtaccagcagtgtcctataaggatcaatagtagatctgtgtacttgtgatggttaaatatcctgtaagaagccatgctggtgtcaaagattttcccgccatagcacattttttgtgcagtAGTGTTCTCCC----CAAGGC--CCTTAATAGC-GC--TG-TATTT-TAACCCAGCGCTATT-GAGTTTTCAGCAC-T--GGTGCTATCACTT-A--CCCAGT-GC-TTTGCTATAA-GCTACCAGCACTGT-CGCTATAAA----GATC-A--T--TAGA-TTGTGT-A--TTG-TGA-TGGGTTAA-ATTTATCTTGTAAG-AAAGTCA------TGTCA-A------------AG---------------ATTTTTTC-----AC--CC--CA---AGC-ACATTT----TATGTTGC--A-ga
gi|5 : --TTATA-TCAA--ATGTAAGCA-GTTA--C--AA-GCAAATATTA--AA-A-----AA---TG-TTA-TCAA--GA--A-TGCT----TTCA-A---TA-T---AAAGA--A-TATTGAA-GTTAGT-AA---A-TTA--TA-ACAAGATCA-ATG-TAAACAAATTTAAAAC---ATGAAAAACAT-TAA-AC-CGCAA-TG--AA-GCGTTTCACA-A-C-----AAGCTC-CTA--A-T-AAG-GTT-GTGC--CG-CGCGCGT-CAAA--ATA-CAAGCGCTAATA-AAAAAATCCTGGG-GAGGA-ACACTattatatcaaatgtaagcagttacaagcaaatattaaaaaatgttatcaagaatgctttcaatataaagaatattgaagttagtaaattataacaagatcaatgtaaacaaatttaaaacatgaaaaacattaaaccgcaatgaagcgtttcacaacaagctcctaataaggttgtgccgcgcgcgtcaaaatacaagcgctaataaaaaaatcctggggaggaacact
gi|6 : agtgttctccccaaggcccttaatagcgctgtattttaacccagcgctattgagttttcagcactggtgctatcacttacccagtgctttgctataagctaccagcactgtcgctataaagatcattagattgtgtattgtgatgggttaaatttatcttgtaagaaagtcatgtcaaagattttttcaccccaagcacattttatgttgcaaAGTGTTCTCCC----CAGGCC--CTTTTT-AGC-GC--TG-TATTTCTA---CAGCGCTATT-GAGTTT-CAGCACCT--G-TGCTATCACTTAA--C--AGCTGC-TGGGCTATAA-GCTACCAGCACTGTTC-CTATAAA----GATCCA-AT-----AA--GTGTTA--TTGCTGA-TGG-TTAA-AT--ATCTTGTAAG-AAAGTCA------TGTCA-A------------AG---------------A-TTTTGC-----AC--CC--CTT--AGC-A-A-TT----TATGTTGC--A-
gi|6 : ATG--TTGCAATTAA--TCATGA-C--GTTA-----CA-TCAA-TATTA--AA-A-----C----TG-TTA-TCAA--GA--A-TGCT------CACA---TA-T---AAA-C--A-TAT-GAA-GTTAGT-AA---AATTA--TA-CAAAGATCA-ATG-TAAACAAATTT--AAC---ATAGAAAACATATAA-AC-CGCAA-CG--AC-GCGTTTCACAAA-C-----AAG--CTCTA--A-T--AG-GTC-GT-T--CGCCGCCCTC-T-AA--ATA-C-AGTGCT-ATC-AAAGA--CCTGGGCGA-GA-ACACTGattaatcatgacgttacatcaatattaaaactgttatcaagaatgctcacatataaacatatgaagttagtaaaattatacaaagatcaatgtaaacaaatttaacatagaaaacatataaaccgcaacgacgcgtttcacaaacaagctctaataggtcgttcgccgccctctaaatacagtgctatcaaagacctgggcgagaacactg
gi|7 : agtgttctccccaggccctttttagcgctgtatttctacagcgctattgagtttcagcacctgtgctatcacttaacagctgctgggctataagctaccagcactgttcctataaagatccaataagtgttattgctgatggttaaatatcttgtaagaaagtcatgtcaaagattttgcaccccttagcaatttTTGC--AATGGGACTA--TTTTTCACTCTCCT--GGG-CGCCGAGTGG--TAGATTTT----ACACCT-GATCTAC---------C---------------CC----------ACACATCT-CA-AA-ATTTGTT-GAA--ATTC--ACACC-TT--T--------GAAATC-----AC----GCT---CCCA--ATT-CACGGATCCTTGA-TTTTGT-----TAAAC----CAA-ACA-ACT-AA--TGTGTTGTTAATT-AC------------CCTGCATG--C-TGAATA---G-T
gi|7 : accacctgtccaatatactCGCTTGCCAATAT-CAAA-------AAGTAGA--A---ATCGCGTT---T-GATACAATCGCCGAAT-AAAGGT-AA--AATT-TCATGAA-----TACA-TG--AAAATTTGA-AT-AGTT-TT-AATTTAATAAAT-TTATT-TGTAA-TAAACA-------AT-GAGT------------A-------AGAGTTTTATTATTGC-CTgctgaaaaaacgaattattccccttgccgtttaaaacgcttgccaatatcaaaaagtagaaatcgcgtttgatacaatcgccgaataaaggtaaaatttcatgaatacatgaaaatttgaatagttttaatttaataaatttatttgtaataaacaatgagtaagagttttattattgccttaa
gi|8 : accacctgtccaatatactttgcaatgggactatttttcactctcctgggcgccgagtggtagattttacacctgatctaccccacacatctcaaaatttgttgaaattcacacctttgaaatcacgctcccaattcacggatccttgattttgttaaaccaaacaactaatgtgttgttaattaccctgcatgctgaatagtgctgaaaaaacgaattattccccttgccgtttaaaaGTTCTCCC----CAGGGC--CCTTAC-AGC-GCGTTGCTATAT------CAGCGCTATC-AAA-----AGTG--------------A----A--G--AGC-AC-TGTGCTAT---GCTATCAGCACTGTCC-CTATAAA----GAC----AT--TAGAACCGAGC-A--Ttaa
gi|8 : -----AC--TGTC--CCTATA--AAGACA--TTAGAACCGAGCATGTAAGCA-GTTA--TTACA-GCAA-TATTA--GACA-----TA---TGATTA-TCAA-TGA--A-TGCT----TTCA-A---T--T---AA--C--A-TAA-GAA-CTTAGT-AA---ATT-G--TA-CCAAGATCA-GTG-TAAAC-AATATTAAAC---ATGAAAAAC----AA-AC-CACAG-CG--AT-ACGTTT--C--A-C-----AA------TA--A-TAAAG-GTC-GTGT--CA-TGCGCTT---AA--ATA-C-AGCGC--ATT-ACAGAATCCTGGG-GA-GA-ACACTgtaagcagttattacagcaatattagacatatgattatcaatgaatgctttcaattaacataagaacttagtaaattgtaccaagatcagtgtaaacaatattaaacatgaaaaacaaaccacagcgatacgtttcacaataataaaggtcgtgtcatgcgcttaaatacagcgcattacagaatcctggggagaacact
gi|9 : gttctccccagggcccttacagcgcgttgctatatcagcgctatcaaaagtgaagagcactgtgctatgctatcagcGTTCTCCC----CAGG-C--CCTTAA-AGC-GC--TG-TGTCTATA---CAGCGCTATC-A----------------G-TG----------A--G--AGC-AC-TGTGCTATT--GCTATCAGCACTGT-C-CTATAAA----GATC-A-AT--TAGAACCGAGC-A--T
gi|9 : ATCA-GTGAGAGC-ACTGTG-CTA-TT-GCTATCAGCAC--TGTC--C-TATA--AAGATCAATTAGAACCGAGCATGTAAGCA-GTTA--TA-CA-GCAA-TATTA--GA-A-----TA---TG-TTA-TCAA-TGA--A-TGCT------CA-A---TA-----AAA-C----TAATGAT-CTTAGT-AA---A---G--TA-CAAAGATCA-GTG-TAAAACAATATTAAACA---TGAAAAACA---AA-CC-CGCAG-GG--AT-ACGTTTC----A-C-----AA------TA--A-T-AAG-GTC-GTGT--CA-TGCGATT-TAAA---TA-C-AGCGCT-ATT-ACAAAATCCTGGG-GA-GA-ACACTGgtaagcagttatacagcaatattagaatatgttatcaatgaatgctcaataaaactaatgatcttagtaaagtacaaagatcagtgtaaaacaatattaaacatgaaaaacaaacccgcagggatacgtttcacaataataaggtcgtgtcatgcgatttaaatacagcgctattacaaaatcctggggagaacactg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATTACATGTACATGAAATCATCGATCTCACGTTTATAACTCGCAAAAATATCT
Alignments
lowQualScore : 11111111111111111111111111111111111111
lowQualScore : 1 111111 999999999999999999999999999999999 222 11 11 111111 666666666666666666666666666666666 111111111 111 1111 1 11111 11 11 11 2222 11 55555555555555555555555555555555555555 22222 1 1 11 22 1 44444444444 44444444444444444 11 1 1 22222 11111 1 1 1 11 11 222 1111111 111 1 5555555555555 11111111 1 222 11 11 1 11 1 2222 1 333333 222 22222 2222222222222 1 11 7777777777777777777777777777777777 2222 1 222222 1 11 222 2222 1 1 1 222 11 1 11 66666666666666666666 1 1 1 22222 1 1 1 1 11 1 222222 1 1 111 22222 1111 33 11 111 33333 1111111111 111111 1 2222 111 33333333333333333333 111
lowQualScore : 8888 7 55 666 4 55 4 555555 66 222222222222222222222222222222222 4 4 1 000 8 4 9999 4 4 66 88 1 4 00 8 8 8 1 6 55 77 666666 444444444444444444444444444444444 999999999 77 77 111 1 7777 66 0 44444 2 2 33 33 3 33 3333 33 0 11111111111111111111111111111111111111 55555 0 0 33 55 0 66666666666 99999999999999999 2 33 0 1 3 2 0 55555 88888 0 0 0 22 8 66 33 666 1 8888888 777 0 1111111111111 44444444 5 1 111 1 1 66 88 1 5 88 5 4444 1 0 1 6 3 888888 7 333 0 44444 888888 6 6 99 6 1 9999999999999 1 3 6 6 11 1 0 1 8 8 0 11 1111111111111111111111111111111111 0 5 8 0 2222 0 999999 1 1 5 88 000 1 1 3333 5 5 5 111 88 5 1 1 88 88888888888888888888 5 1 5 1 5 1 1 66666 2 1 22 5 5 5 5 88 5 999999 5 5 22 1 1 2 888 1 6 0 3 8 11111 5 5 5555 66 11 999 1 1 55 4 66666 4 4 66 8 5555555555 4 4 66 66 4 4 555555 4 777 999999 4 9999 1 4 8 777 4 55 4 88 4 8 8 1 4444 000 4 4 4 55 66 88888888888888888888 55 4 4 4 4 66 4 111 888 4 4 4 66 4 4 4
lowQualScore : .... . .. ... . .. . ...... .. ................................. . . . ... . . .... . . .. .. . . .. . . . . . .. .. ...... ................................. ......... .. .. ... . .... .. . ..... . . .. .. . .. .... .. . ...................................... ..... . . .. .. . ........... ................. . .. . . . . . ..... ..... . . . .. . .. .. ... . ....... ... . ............. ........ . . ... . . .. .. . . .. . .... . . . . . ...... . ... . ..... ...... . . .. . . ............. . . . . .. . . . . . . .. .................................. . . . . .... . ...... . . . .. ... . . .... . . . ... .. . . . .. .................... . . . . . . . ..... . . .. . . . . .. . ...... . . .. . . . ... . . . . . ..... . . .... .. .. ... . . .. . ..... . . .. . .......... . . .. .. . . ...... . ... ...... . .... . . . ... . .. . .. . . . . .... ... . . . .. .. .................... .. . . . . .. . ... ... . . . .. . . .
lowQualScore : 5555 5 55 444 0 55 0 888888 33 777777777777777777777777777777777 4 4 1 333 9 4 4444 4 4 11 66 0 4 66 0 0 0 7 7 88 44 444444 111111111111111111111111111111111 666666666 99 99 777 4 9999 99 0 22222 5 5 88 88 2 88 2222 22 8 55555555555555555555555555555555555555 22222 0 0 88 00 0 88888888888 00000000000000000 0 88 0 0 2 5 0 00000 88888 0 0 0 00 8 55 22 222 0 5555555 555 0 3333333333333 88888888 0 0 555 0 0 00 55 0 0 55 5 0000 0 7 0 7 3 000000 3 333 7 00000 888888 7 7 22 7 0 8888888888888 7 3 7 7 66 0 8 0 0 0 8 88 0000000000000000000000000000000000 8 0 0 8 8888 0 000000 0 0 5 55 555 0 0 0000 5 5 0 000 00 5 0 0 00 55555555555555555555 5 0 5 0 0 0 0 00000 5 0 00 5 0 5 5 00 5 555555 5 5 00 0 0 5 555 0 5 8 2 0 00000 0 6 4444 00 00 333 0 7 00 0 66666 4 4 11 9 4444444444 4 4 33 11 4 4 888888 4 888 888888 0 4444 1 0 0 000 7 55 0 88 0 0 8 1 2222 222 0 0 0 55 33 77777777777777777777 55 0 0 0 0 11 4 777 000 4 4 4 33 0 0 4
consensus : AGTGTTCTCCC----CAGGGC--CCTTAN-AGC-GC--TG-TATTT-TA---CAGCGCTATC-GAGTTT-CAGCGC-T--G-TGCTATCACT--A--C--AGC-GC-TGTGCTATN--GCTACCAGCACTGT-C-CTATAAA----GATC-A-AT--TAGAACCGNGC-A--TTG-TGA-TGG-TTAA-AT--ATCTTGTAAG-GAAGCCA------TGTCA-G------------AG---------------A-TTTTTC-----AC--CC--CAT--AGC-ACATTT----TATGTTGC--A-TCGGACTA--TTTTTAACTCTCCT--GAAACGCCAGGTGG--TAGATTTT--CAACACCT-GATCTAC---------AG-----G-------GCC----------ACACATCG-CGGAA-ATCCGTC-GAA--ATTC-CACACC-TT--T------T-GAAAAC-----AC----GGC---CCCG--TTT-CANGGATCCTTGG-TTTTGT-----TAAAN--AACAA-ACA-ACT-AATGTGTGTTGTTAATTAAC-TTCACTC--AACCTGCANG--C-T--ATA---G-TTGTT--TT-AT---GCCTAATTAACAGGAGGATAACTTGAGTTNAAATTTATNCNAAACNACAAACTTGGTTAGNCATGCGTGTGGTTTAAAAACGACAATATTAGCATAGGGANGATCGCTTNCCAACAT-CAAATC---GAAAGTAGATTA---ATCTCGTT-AAT-GAAACAGTCGCTGAAT-AAAGGT-AA--AATT-TCATGAAA---TTA-A-TG--AAAATTT-A-ATAAGTT-TTAAACTTAATAAATGTTA-T-TGTAA-TAAATA-------AT-GAGT------------A-CTT---AGAGTTTTATTATGAC-CTATGG--CA-CATGAAATCATCGCGGTGAGGTAACNAAGANTTCATTAAAACTCACANTATCTCNCGCGAGGATAAGACAAACGGCTTCCATCACACGCTTGTGTGATCAATTGCAAATTGTGANCTTCCTANAACATGGCTTCTAATATAGGCGTTCCAGCTAAGCCACAAGGTAGANTCACTGTTCNAGGTATGAGACNGANGGAGCACTGATTCCCGGGACACCTNGCTGTTTNNGATCAAAGTTTAACGCCTAATACCTGCAAATATTACTGTAGGTAAAAGATTATGAAGTATGGGTTTTGAACAATTTTATTTACACNNTTNTTTNGTATACGTTTGGNTCATNTGTTGATCAAGTGA-GAGCACTGTGACTAATTGCTATCAGCACTGT-C--CTATAGTAA--GATN--TTANAACCGAGCATGTAAGCA-GTTA--T--CA-GCAA-TATTA--AA-A-----TA---TG-TTA-TCAA-TGA--A-TGC-T----T-CA-A---TA-T---AAA-C--A-TATTGAA-CTTAGT-AA---ATTTA--TA-CAAAGATCA-GTG-TAAACAAATNTTAAACA--ATGAAAAACAT-TAA-AC-CGCAG-CG--AC-GCGTTTC-C--A-C-----AAG--C-CTA--A-T-AAG-GTC-GTGT--CG-CGCGCTT-TAAA--ATA-C-AGCGCT-ATC-AAAAAATCCTGGG-GA-GA-ACACTG
Reference ( family-1486 ) : AGTGTTCTCCC----CAGGGC--CCTTAN-AGC-GC--TG-TATTT-TA---CAGCGCTATC-GAGTTT-CAGCGC-T--G-TGCTATCACT--A--C--AGC-GC-TGTGCTATN--GCTACCAGCACTGT-C-CTATAAA----GATC-A-AT--TAGAACCGNGC-A--TTG-TGA-TGG-TTAA-AT--ATCTTGTAAG-GAAGCCA------TGTCA-G------------AG---------------A-TTTTTC-----AC--CC--CAT--AGC-ACATTT----TATGTTGC--A-TCGGACTA--TTTTTAACTCTCCT--GAAACGCCAGGTGG--TAGATTTT--CAACACCT-GATCTAC---------AG-----G-------GCC----------ACACATCG-CGGAA-ATCCGTC-GAA--ATTC-CACACC-TT--T------T-GAAAAC-----AC----GGC---CCCG--TTT-CANGGATCCTTGG-TTTTGT-----TAAAN--AACAA-ACA-ACT-AATGTGTGTTGTTAATTAAC-TTCACTC--AACCTGCANG--C-T--ATA---G-TTGTT--TT-AT---GCCTAATTAACAGGAGGATAACTTGAGTTNAAATTTATNCNAAACNACAAACTTGGTTAGNCATGCGTGTGGTTTAAAAACGACAATATTAGCATAGGGANGATCGCTTNCCAACAT-CAAATC---GAAAGTAGATTA---ATCTCGTT-AAT-GAAACAGTCGCTGAAT-AAAGGT-AA--AATT-TCATGAAA---TTA-A-TG--AAAATTT-A-ATAAGTT-TTAAACTTAATAAATGTTA-T-TGTAA-TAAATA-------AT-GAGT------------A-CTT---AGAGTTTTATTATGAC-CTATGG--CA-CATGAAATCATCGCGGTGAGGTAACNAAGANTTCATTAAAACTCACANTATCTCNCGCGAGGATAAGACAAACGGCTTCCATCACACGCTTGTGTGATCAATTGCAAATTGTGANCTTCCTANAACATGGCTTCTAATATAGGCGTTCCAGCTAAGCCACAAGGTAGANTCACTGTTCNAGGTATGAGACNGANGGAGCACTGATTCCCGGGACACCTNGCTGTTTNNGATCAAAGTTTAACGCCTAATACCTGCAAATATTACTGTAGGTAAAAGATTATGAAGTATGGGTTTTGAACAATTTTATTTACACNNTTNTTTNGTATACGTTTGGNTCATNTGTTGATCAAGTGA-GAGCACTGTGACTAATTGCTATCAGCACTGT-C--CTATAG-AA--GATN--TTANAACCGAGCATGTAAGCA-GTTA--T--CA-GCAA-TATTA--AA-A-----TA---TG-TTA-TCAA-TGA--A-TGC-T----T-CA-A---TA-T---AAA-C--A-TATTGAA-CTTAGT-AA---ATTTA--TA-CAAAGATCA-GTG-TAAACAAATNTTAAACA--ATGAAAAACAT-TAA-AC-CGCAG-CG--AC-GCGTTTC-C--A-C-----AAG--C-CTA--A-T-AAG-GTC-GTGT--CG-CGCGCTT-TAAA--ATA-C-AGCGCT-ATC-AAAAAATCCTGGG-GA-GA-ACACTG
gi|1 : GTTCTGCC----CAGA-C--CTTTTT-AACTGC--TG-TATTT-T----CAGCGCTATCAGAGTTT-TAGCGC-TCTG-GGCTAT-ACT--A--CC-AGC-ACGTCTGCTATGAAGCTACCTGCGCTGT-C-CTATGAGAGAGGATC-AGAA--TAGA-TTGTGT-AATTTG-TGAATGG-TTGAGAT--ATCTTATAAA-GAAGGCA------TGTCTTG------------AGTGTCAATGATCAATAA-TTTCTC-----AA--CC--CAT--AGT--CATTTGAAATATGTTGT--AATCGGA--------TTAA-TCTC-T--GAAATGCCAGGTGG--TAGATTTT--CAACACC--GATCTACCCGCACCAGAGAAATAG-------GCCTATATAGGCAACACATAA-TGGAATACCCGTCCGAA--ATTC--ACACC-TT--TAGGCTTT-GAAAACCACTTAT----AGCTCTCCTG--TTTATAAGG-TCATTGG-TCTTGT-----TAAAGGAAACAC-ACATACT-AAT-TGTATC-TTAATTA-C-TTCACTCTTAACCTGCCAG--CGT--ATAAGAG-TTTTTACTT-ATT--GTCTAATTAACAGGAGGATAACTTGAGTTTAAATTTATTCCAAACCATAAAC--GGTTAGCTAT-CGTGTGGTTTAAAAACGACAATATTAGC----GGATGATAACTCTC-AACATGCAAATTTGTAAACGTAGATTATCTATTTTGTT-AAT-GAAA----------------GGT-AA--A-TA-TCATCCAACAGTCC-A-TG--AAGATCTCACATAAGTTATTAAACTTAATAA-TGGTA-TATGTAA--AAATATAGGGGGAT--AGT------------A-TTTTGGAGAGTTTTATTATGAC-CTATGGATCAGCATGAAATCATCGCGGTGAGGTAACAAAGAGTTCATTAAAACT---ATTATCTCCCGCGAGGATAAGACAA-CGGCTTCCATCACACGCT---GTGAT--AT-GCAAATTGTGAACTTTCTAAAACATGGCTTCTAATATAGGCGTTCCAGCTAAACCACAAGGTAGAGTCACTGTTCAAAGTATGAGACGGAGGGAGCATTGATTCCCTGGACACCTAGCTGTTTAAGATCAAAATTTAACGCCTAATA-CTGC-AATATTACTATAAGTAAAAGATTA-GAAGTATG------GAACAATTTTATTT-CACGTTTTTTTGGTATACGTTTGGGTCATGTGTTGATTAAGTAA-AATGATTGTGAGTAATTG-----AACGGTGT-T--ATATAGTAACCGGTT--ATATAACC-----TTTAAGTA-TTTA--
gi|1 : CGAGGGTGTAAGCA-GTTACAT--TATGTTA-TATTATTAG-A-----TA---AG-AGA-TTGA-TAA--AATG--TACAAT-CA-A---TA-TGAGAAA-CCTA-TATTAAA-CTTAGT-AAGATATTTA--TA-CAAAGATCATGTGTTGAACAAAATTTAAAAC--ATGAAGA------AA-ACTCTCA--CG--A-------------G-A-----AAG--CTCTA--AGT-AA--GTC-TAGT--CG-CGCGCTC-T-AA--ATATC-AGTGCT-ATC-AAAAAATCCTGGG-GA-GATACACgttttagttgttcttttttctcttctatattataatcatatgcacgagggtgtaagcagttacattatgttatattattagataagagattgataaaatgtacaatcaatatgagaaacctatattaaacttagtaagatatttatacaaagatcatgtgttgaacaaaatttaaaacatgaagaaaactctcacgagaaagctctaagtaagtctagtcgcgcgctctaaatatcagtgctatcaaaaaatcctggggagatacac
gi|10 : gttctgcccagacctttttaactgctgtattttcagcgctatcagagttttagcgctctgggctatactaccagcacgtctgctatgaagctacctgcgctgtcctatgagagaggatcagaatagattgtgtaatttgtgaatggttgagatatcttataaagaaggcatgtcttgagtgtcaatgatcaataatttctcaacccatagtcatttgaaatatgttgtaatcggattaatctctgaaatgccaggtggtagattttcaacaccgatctacccgcaccagagaaataggcctatataggcaacacataatggaatacccgtccgaaattcacacctttaggctttgaaaaccacttatagctctcctgtttataaggtcattggtcttgttaaaggaaacacacatactaattgtatcttaattacttcactcttaacctgccagcgtataagagtttttacttattgtctaattaacaggaggataacttgagtttaaatttattccaaaccataaacggttagctatcgtgtggtttaaaaacgacaatattagcggatgataactctcaacatgcaaatttgtaaacgtagattatctattttgttaatgaaaggtaaatatcatccaacagtccatgaagatctcacataagttattaaacttaataatggtatatgtaaaaatatagggggatagtattttggagagttttattatgacctatggatcagcatgaaatcatcgcggtgaggtaacaaagagttcattaaaactattatctcccgcgaggataagacaacggcttccatcacacgctgtgatatgcaaattgtgaactttctaaaacatggcttctaatataggcgttccagctaaaccacaaggtagagtcactgttcaaagtatgagacggagggagcattgattccctggacacctagctgtttaagatcaaaatttaacgcctaatactgcaatattactataagtaaaagattagaagtatggaacaattttatttcacgtttttttggtatacgtttgggtcatgtgttgattaagtaaaatgattgtgagtaattgaacggtgttatatagtaaccggttatataacctttaagtatttagttttagttgttcttttttctcttctatattataatcatatgcaTGTAAGCA-GTTA-----CA-GCAA--ATTA--AA-AATATTCA---TG-TTAATCA--TAATCA-TGC-T----T-CA-AATATA-T---AAA-C--AGTATTAAA-CTTAGT-AA---ATTTAATTAGCAAAGATCA-----------AATGTAAAACATGATAAAGAACAT-TAA-AC-CGCAG-CG--ACCGCGTTTT-C--AGC-----AAG--C-CTA--G-T-AAG-GTCCGTGTTGCG-CGCGCTT-CTAA--ATA-C-AGCGCT-ATCAAAAAAATCCTGGG-GA-
gi|11 : actttcgannnnnnnnnnnnnnnnnnnnnnnnnttttttgtatatattacacagagggcacatctTGTTCTCCC----CAGG-C--CCTTAA-AGC-GC--TG-TGCTT-TA---CAGCGCTATC-AAGT-----GAG-------------------------AGC-AC-TGTGCTATT--GCTATCAGCACTGT-C-CTATAAA----GATC-A-AT--TAGAACCGAGC-A--T
gi|11 : ATCAAGTGA-GAGCACTGTG-CTA-TTGCTATCAGCACTGT-C--CTATA--AA--GATCAATTAGAACCGAGCATGTAAGCA-GTTA--TTACA-TCAA-TATTA--AA-A-----TA---TG-TTA-TCAA-TGA--A-TGC-T----T-CA-A---T--T---AAA-C--A-TAATGAA-CTTAGT-AA---A-TTG--TA-CAAAGATCA-GTG-TAAAC-AATATTAAAC---ATGAAAAACA---AA-CC-CGCAG-CA--AT-ACGTTT--C--A-T-----AA------TA--A-T-AAG-GTC-gtaagcagttattacatcaatattaaaatatgttatcaatgaatgcttcaattaaacataatgaacttagtaaattgtacaaagatcagtgtaaacaatattaaacatgaaaaacaaacccgcagcaatacgtttcataataataaggtcaaatcctggggagaacactgg
gi|11 : tgttctccccaggcccttaaagcgctgtgctttacagcgctAAATCCTGGG-GA-GA-ACACTGaaatcctggggagaacactgg
gi|12 : tgttctccccaggcccttaaagcgctgtgctttacagcgctatcaagtgagagcactgtgctattgctatcagcactgtcctataaagatcaattagaaccgagcatgtaagcagttattacatcaatattaaaatatgttatcaatgaatgcttcaattaaacataatgaacttagtaaattgtacaaagatcagtgtaaacaatattaaacatgaaaaacaaacccgcagcaatacgtttcataataataaggtc---AAA-C--A-TATTGAA-CTTAGT-CA---ATT-A--TA-CAAAGATCA-ATG-TAAACAAAT-TTAAACA---TGAAAAACAT-TAA-AC-CGCAG-TG--AC-GCGTTTCAC--AAC-----AAG--CTCTC--A-T-AAG-GTC-GTGC--CG-CGCGCTC-TAAA---TA-C-AACGCT-ATC-AAAAAATCCTGGG-GA-GA-ACACTGg
gi|13 : aCTCCC----CAGG-C--CCTTAA-AGC-GC--TG-TGCTT-TA---CAGCGCTATA-AAGT-----GAG-------------------------AGG-AC-TGTGCTATT--GCTATCAGCACTGT-C-CTATAAA----GATC-A-AT--TAGAACCGAGC-A--T
gi|14 : ACAGTCACTGAAT-AAAGGT-AA--AATT-TCATAAAA----------------GTTG-A-ATAAGTT-T-AAACGTAATAAATGTTA-T-TGTAA-TGAATA-------AT-AAG----------------TT---ACAG----ATTAC-AT-CTATTG--CA-Cgtaagcagtta
gi|15 : tgtAA-ATT-ACCATGTAAG--AAGCCA------TGTCA-GTGTCAATTTCAAAG---------------T-TTTTTC-----AG--TC--CAT--AGC-ACAGTG----TACGTTGC--A-ttaa
gi|16 : ACAGTCGCTGAAT-AAAGGT-AA--AATT-CCACGAAA---TCA-ACTG--AAAATTT-A-ATAAGTT-atcatattcgaaaaatgtacag
gi|18 : tcatattcgaaaaatgtGTGTTCTCCCGGCCCAGA-C--CCTTAA-AGC-GC--TG-TGCTT-TA---CAGC
gi|2 : AGTGTTTCTCC----CAGAGCGACCTTTT-ACC-GC--TG-TATTT-TTT--CGGCGCTATC-GAGTTTTCAGCAC-T--C-TGCT-TCAAT--A--C--AGC-GC-TCTGC-ATA--GCTACCAGCGCT-T-C-CT-TAAA----GATC-A-AT--TAGATTTGTGC-A--TTG-TGA-TGG-TT-A-AT--ATCTTA-AAG-GAAGCCA-------GCCT-G------------AG---------------A-TTTTTC-----ACGTAC--CAT--AGCTTCATTT----TATGTTGC--A-TCAGATTA--TTTCCAACTCTCCT--GAAATGCCAGG-AG--TAGATTTT--TCACACCT-GATCTCC---------AG---------------------------CACATC--TGGAA-ATCCGTC-GAA--ATTC-CACACT-TTAGT------TGGAAAAC-----ACTAGAAGC---TCTG--TTT-CGAGGATCCTTAG-CTTTGT-----TAAAT--AACAA-ACA-ACC-AATGTGTGTTCTTAATTAAC-TTCACTCA-AACCTGCAAG--C-T--ATA---G-TTGTT--CT-AT------TAA--------AGGATAA-TTGAGTTAAAA---ATGCGAAA-AACAAACTTAATTAAGCATGCGTGTGGTT--AAAACAAC-ATATTAGCATAGGGAGAATCACTTCTCACCAT-CAAATC---GAAAGTAGATTA---ATCTTGTTGAATCGAAAGAA----TGAAT-AAATGT-CATCCACA-TCATGAAA---TTA-A-TGCAAAAATTT-A-ATAAGTT-TTAAACTTAATAAATGTTA-T-CG-AA-CAAATA-------ATCGAGT------------G-CTT---AGAGTTTTATTATGAC-A-ATGA--CA-CATGAAATCATCGCGGT------ACTAAAATTTT-TT--AACTCACAATATCTCACAC----AT-AGACAAACGGCTTCCATCACA-ACTTGTGTGATCAATTGCAAATTGTGACTTTCCTATA--ATGGCTTC--------------------AGCCAC-AGGTAGATTTAC-GTTCCAGGTAT-AGACTGATG-----CTGATTCCTGGAACACCTCGCTGTTTTTAATCAAAG-TTAACGCCTAATACCTGCAAATATTAC-GTAGGTAAA--ATTATGAAGTATGGGTTTTGAACAA-TTTATTTACACCATTGTTTTGTATATTTTT--TTCATTTGTTGAT--AGT----AATATTGT-ATTAATTGGTA-----ACTGT-TAACTATAGTAA--GGTT--TTATAATTAA--AAGTAAGCA-GTTA-----CA-GCAA-TATTA--AATA-----TA---TG-T---TCAA-TCA--A-TGC-T----T-CA-A---TA-T---AAA-C--A-TATTAAA-CTTAGTAAA---ATTCA--TA-CAAAGATCA-GTG-TTAACCAATTTTAAGCA--ATGAAAAACAT-TAAGAC-CGCAG-CG--AC-GCGTTTC-C----C-----AAG--C-CTA--G-T-AAGCGTC-GTGT--CG-CGCGCTA-TAAA--ATA-C-AGCGCC-CTC-AAAAATCCCTGGG-GA-GA-ACACTG
gi|3 : AAGAGAAGCCA------TGTCA-T------------TGTC-------------A-TTTTTTTAATAAT--CCATCATTTAGC-A-ATGTG---TATGTTACTAA-TCAGACTAATTTTTTAGCTCTTCTATGAAA-ACCAGGTGGCGTAGATTTTATCAGCACTTTGATTTGC---------AA-----GAGTACGAGCC----------CGACACCGTCAAAA-ATCTGTC-AAATAATTTTCACACCCTT--T------T-GAAAAC-----AT----GAT---CTTGTTTTT-CATGGAT-CTTGATTTTTGTTTAAATAAAA--AGCAACACA-AATGAATGTGTAGTGTTAATTAACGTTCACTG--AACCTGCATGCTC-T--ATA---GCTTGTT--TTAATAAAGCTTAATTAA
gi|3 : GCTGAATTAAAGGTTAA--AATTGTCATTAAA---TTACA-TA--AAA--TT-A-ATAAGGT-TTAAACACGTTAAATGATT-T-TGTAAATAAATA-------AT-AAGTTATCAGCTAGTCATCTA---AGAGTTTTGTAATGGCTCTAT----CA-CATGAAATCATattgggatgcatcctctctagattctgttagggaagattaactttacaactcttagcctccgacaaacaaagtaaaaacgctttgtatatcgaaaaattaacacgagtcgcgcgagtatgctgaattaaaggttaaaattgtcattaaattacataaaattaataaggtttaaacacgttaaatgattttgtaaataaataataagttatcagctagtcatctaagagttttgtaatggctctatcacatgaaatcatgctgtataaaat
gi|4 : aagagaagccatgtcattgtcatttttttaataatccatcatttagcaatgtgtatgttactaatcagactaattttttagctcttctatgaaaaccaggtggcgtagattttatcagcactttgatttgcaagagtacgagcccgacaccgtcaaaaatctgtcaaataattttcacacccttttgaaaacatgatcttgtttttcatggatcttgatttttgtttaaataaaaagcaacacaaatgaatgtgtagtgttaattaacgttcactgaacctgcatgctctatagcttgttttaataaagcttaattaaattgggatgcatcctctctagattctgttagggaagattaactttacaactcttagcctccgacaaacaaagtaaaaacgctttgtatatcgaaaaattaacacgagtcgcgcgagtatAGTGTTCTCT-------AGGC--CATTTT-AGC-GC--TG-TATTT-TA---AGGCGCTAT--GAGTTT-CAGCAC-T--G-TGCTATCACT--ACTC--AGT-G--TCTGCTATA--AGTACCAGCAGTGT-C-CTATAAG----GATC-A-ATAGTAGATCTGTGT-AC-TTG-TGA-TGG-TTAA-AT--ATCCTGTAA--GAAGCCATGCTGGTGTCA-A------------AG---------------A-TTTTCC------C--GC--CAT--AGC-ACATTT----TTTG-TGC--A-gctgtataaaat
gi|4 : gATGTAAGCAAGTTA------A-GCAA-TATTA--AA-A-----AAAATTG-TTA-TCAAGTGA--A-TGC-T----T-CA-A---TAAT---AAA-C--AATATTGAAACTTAGTTAA---ACTTA--TA-CAAAGATCA--TG-TAAACAAAT-TTCAACA---TGAAAAATAT-TAA-CT-TGCAGGCGGTAC-GCGTTCT-C--A-CGAGACAAG--A-CTGCTA-T-AGG-CTC-GTCC--TG-CGCGCTTCTAAATTATA-C-AGCGCT-AT--AAAAAATCCTGGG-GA-GA-ACACTGgttaatgcaatgtaagcaagttaagcaatattaaaaaaaattgttatcaagtgaatgcttcaataataaacaatattgaaacttagttaaacttatacaaagatcatgtaaacaaatttcaacatgaaaaatattaacttgcaggcggtacgcgttctcacgagacaagactgctataggctcgtcctgcgcgcttctaaattatacagcgctataaaaaatcctggggagaacactgga
gi|5 : gagtgttctctaggccattttagcgctgtattttaaggcgctatgagtttcagcactgtgctatcactactcagtgtctgctataagtaccagcagtgtcctataaggatcaatagtagatctgtgtacttgtgatggttaaatatcctgtaagaagccatgctggtgtcaaagattttcccgccatagcacattttttgtgcagttaatgcaAGTGTTCTCCC----CAAGGC--CCTTAATAGC-GC--TG-TATTT-TAACCCAGCGCTATT-GAGTTTTCAGCAC-T--GGTGCTATCACTT-A--CCCAGT-GC-TTTGCTATAA-GCTACCAGCACTGT-CGCTATAAA----GATC-A--T--TAGA-TTGTGT-A--TTG-TGA-TGGGTTAA-ATTTATCTTGTAAG-AAAGTCA------TGTCA-A------------AG---------------ATTTTTTC-----AC--CC--CA---AGC-ACATTT----TATGTTGC--A-ga
gi|5 : ATGTAAGCA-GTTA--C--AA-GCAAATATTA--AA-A-----AA---TG-TTA-TCAA--GA--A-TGC-T----TTCA-A---TA-T---AAAGA--A-TATTGAA-GTTAGT-AA---A-TTA--TA-ACAAGATCA-ATG-TAAACAAATTTAAAAC---ATGAAAAACAT-TAA-AC-CGCAA-TG--AA-GCGTTTCACA-A-C-----AAGCTC-CTA--A-T-AAG-GTT-GTGC--CG-CGCGCGT-CAAA--ATA-CAAGCGCTAATA-AAAAAATCCTGGG-GAGGA-ACACTattatatcaaatgtaagcagttacaagcaaatattaaaaaatgttatcaagaatgctttcaatataaagaatattgaagttagtaaattataacaagatcaatgtaaacaaatttaaaacatgaaaaacattaaaccgcaatgaagcgtttcacaacaagctcctaataaggttgtgccgcgcgcgtcaaaatacaagcgctaataaaaaaatcctggggaggaacact
gi|6 : agtgttctccccaaggcccttaatagcgctgtattttaacccagcgctattgagttttcagcactggtgctatcacttacccagtgctttgctataagctaccagcactgtcgctataaagatcattagattgtgtattgtgatgggttaaatttatcttgtaagaaagtcatgtcaaagattttttcaccccaagcacattttatgttgcaattatatcaaAGTGTTCTCCC----CAGGCC--CTTTTT-AGC-GC--TG-TATTTCTA---CAGCGCTATT-GAGTTT-CAGCACCT--G-TGCTATCACTTAA--C--AGCTGC-TGGGCTATAA-GCTACCAGCACTGTTC-CTATAAA----GATCCA-AT-----AA--GTGTTA--TTGCTGA-TGG-TTAA-AT--ATCTTGTAAG-AAAGTCA------TGTCA-A------------AG---------------A-TTTTGC-----AC--CC--CTT--AGC-A-A-TT----TATGTTGC--A-
gi|6 : ATG--TTGCAATTAATCATG---AC--GTTA-----CA-TCAA-TATTA--AA-A-----C----TG-TTA-TCAA--GA--A-TGC-T------CACA---TA-T---AAA-C--A-TAT-GAA-GTTAGT-AA---AATTA--TA-CAAAGATCA-ATG-TAAACAAATTT--AAC---ATAGAAAACATATAA-AC-CGCAA-CG--AC-GCGTTTCACAAA-C-----AAG--CTCTA--A-T--AG-GTC-GT-T--CGCCGCCCTC-T-AA--ATA-C-AGTGCT-ATC-AAAGA--CCTGGGCGA-GA-ACACTGattaatcatgacgttacatcaatattaaaactgttatcaagaatgctcacatataaacatatgaagttagtaaaattatacaaagatcaatgtaaacaaatttaacatagaaaacatataaaccgcaacgacgcgtttcacaaacaagctctaataggtcgttcgccgccctctaaatacagtgctatcaaagacctgggcgagaacactg
gi|7 : agtgttctccccaggccctttttagcgctgtatttctacagcgctattgagtttcagcacctgtgctatcacttaacagctgctgggctataagctaccagcactgttcctataaagatccaataagtgttattgctgatggttaaatatcttgtaagaaagtcatgtcaaagattttgcaccccttagcaatttTTGC--AATGGGACTA--TTTTTCACTCTCCT--GGG-CGCCGAGTGG--TAGATTTT----ACACCT-GATCTAC---------C---------------CC----------ACACATCT-CA-AA-ATTTGTT-GAA--ATTC--ACACC-TT--T--------GAAATC-----AC----GCT---CCCA--ATT-CACGGATCCTTGA-TTTTGT-----TAAAC----CAA-ACA-ACT-AA--TGTGTTGTTAATT-AC------------CCTGCATG--C-TGAATA---G-T
gi|7 : accacctgtccaatatactCGCTTGCCAATAT-CAAA-------AAGTAGA--A---ATCGCGTT---T-GATACAATCGCCGAAT-AAAGGT-AA--AATT-TCATGAA-----TACA-TG--AAAATTTGA-AT-AGTT-TT-AATTTAATAAAT-TTATT-TGTAA-TAAACA-------AT-GAGT------------A-------AGAGTTTTATTATTGC-CTgctgaaaaaacgaattattccccttgccgtttaaaacgcttgccaatatcaaaaagtagaaatcgcgtttgatacaatcgccgaataaaggtaaaatttcatgaatacatgaaaatttgaatagttttaatttaataaatttatttgtaataaacaatgagtaagagttttattattgccttaa
gi|8 : accacctgtccaatatactttgcaatgggactatttttcactctcctgggcgccgagtggtagattttacacctgatctaccccacacatctcaaaatttgttgaaattcacacctttgaaatcacgctcccaattcacggatccttgattttgttaaaccaaacaactaatgtgttgttaattaccctgcatgctgaatagtgctgaaaaaacgaattattccccttgccgtttaaaaGTTCTCCC----CAGGGC--CCTTAC-AGC-GCGTTGCTATAT------CAGCGCTATC-AAA-----AGTG--------------A----A--G--AGC-AC-TGTGCTAT---GCTATCAGCACTGTCC-CTATAAA----GAC----AT--TAGAACCGAGC-A--Ttaa
gi|8 : AAGTGAAGAGCACTGTG-CTA--TGCTATCAGCACTGTCC--CTATA--AA--GACA--TTAGAACCGAGCATGTAAGCA-GTTA--TTACA-GCAA-TATTA--GACA-----TA---TGATTA-TCAA-TGA--A-TGCTT----T-CA-A---T--T----AA-C--A-TA-AGAA-CTTAGT-AA---A-TTG--TA-CCAAGATCA-GTG-TAAAC-AATATTAAAC---ATGAAAAAC----AA-AC-CACAG-CG--AT-ACGTTT--C--A-C-----AA------TA--A-TAAAG-GTC-GTGT--CA-TGCGCTT---AA--ATA-C-AGCGC--ATT-ACAGAATCCTGGG-GA-GA-ACACTgtaagcagttattacagcaatattagacatatgattatcaatgaatgctttcaattaacataagaacttagtaaattgtaccaagatcagtgtaaacaatattaaacatgaaaaacaaaccacagcgatacgtttcacaataataaaggtcgtgtcatgcgcttaaatacagcgcattacagaatcctggggagaacact
gi|9 : gttctccccagggcccttacagcgcgttgctatatcagcgctatcaaGTTCTCCC----CAGG-C--CCTTAA-AGC-GC--TG-TGTCTATA---CAGCGCTATC-A----------------G-TG----------A--G--AGC-AC-TGTGCTATT--GCTATCAGCACTGT-C-CTATAAA----GATC-A-AT--TAGAACCGAGC-A--T
gi|9 : ATCA-GTGA-GAGCACTGTG-CTA-TTGCTATCAGCACTGT-C--CTATA--AA--GATCAATTAGAACCGAGCATGTAAGCA-GTTA--TA-CA-GCAA-TATTA--GA-A-----TA---TG-TTA-TCAA-TGA--A-TGC-T------CA-A---TA-----AAA-C----TAATGAT-CTTAGT-AA---A---G--TA-CAAAGATCA-GTG-TAAAACAATATTAAACA---TGAAAAACA---AA-CC-CGCAG-GG--AT-ACGTTTC----A-C-----AA------TA--A-T-AAG-GTC-GTGT--CA-TGCGATT-TAAA---TA-C-AGCGCT-ATT-ACAAAATCCTGGG-GA-GA-ACACTGgtaagcagttatacagcaatattagaatatgttatcaatgaatgctcaataaaactaatgatcttagtaaagtacaaagatcagtgtaaaacaatattaaacatgaaaaacaaacccgcagggatacgtttcacaataataaggtcgtgtcatgcgatttaaatacagcgctattacaaaatcctggggagaacactg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATTACATGTACATGAAATCATCGATCTCACGTTTATAACTCGCAAAAATATCT
Alignments
lowQualScore : 11111111111111111111111111111111111111
lowQualScore : 1 111111 999999999999999999999999999999999 222 11 11 111111 666666666666666666666666666666666 111111111 111 1111 1 11111 11 11 11 2222 11 55555555555555555555555555555555555555 22222 1 1 11 22 1 44444444444 44444444444444444 11 1 1 22222 11111 1 1 1 11 11 222 1111111 111 1 5555555555555 11111111 1 222 11 11 1 11 1 2222 1 333333 222 22222 2222222222222 1 11 7777777777777777777777777777777777 2222 1 222222 1 11 222 2222 1 1 1 222 11 1 11 66666666666666666666 1 1 1 22222 1 1 1 1 11 1 222222 1 1 111 22222 22222222222222 33333 1111111111 11111111 1 2222 111 33333333333333333333 111
lowQualScore : 8888 7 55 666 4 55 4 555555 66 222222222222222222222222222222222 4 4 1 000 4 4 4 9999 4 4 66 88 1 4 00 8 8 8 1 6 55 77 666666 444444444444444444444444444444444 999999999 77 77 111 1 7777 66 0 44444 2 2 33 33 3 33 3333 33 0 11111111111111111111111111111111111111 55555 0 0 33 55 0 66666666666 99999999999999999 2 33 0 1 3 2 0 55555 88888 0 0 0 22 8 66 33 666 1 8888888 777 0 1111111111111 44444444 5 1 111 1 1 66 88 1 5 88 5 4444 1 0 1 6 3 888888 7 333 0 44444 888888 6 6 99 6 1 9999999999999 1 3 6 6 11 1 0 1 8 8 0 11 1111111111111111111111111111111111 0 5 8 0 2222 0 999999 1 1 5 88 000 1 1 3333 5 5 5 111 88 5 1 1 88 88888888888888888888 5 1 5 1 5 1 1 66666 2 1 22 5 5 5 5 88 5 999999 5 5 22 1 1 2 888 1 6 0 3 8 11111 5 5 0 77 5 00000000000000 1 1 55 4 66666 4 4 66 8 5555555555 4 4 66 66 4 11111111 4 777 999999 4 9999 1 4 8 777 4 55 4 88 4 8 8 1 4444 000 4 4 4 55 66 88888888888888888888 55 4 4 4 4 66 4 777 66 4 4 4 66 4 4 4
lowQualScore : .... . .. ... . .. . ...... .. ................................. . . . ... . . . .... . . .. .. . . .. . . . . . .. .. ...... ................................. ......... .. .. ... . .... .. . ..... . . .. .. . .. .... .. . ...................................... ..... . . .. .. . ........... ................. . .. . . . . . ..... ..... . . . .. . .. .. ... . ....... ... . ............. ........ . . ... . . .. .. . . .. . .... . . . . . ...... . ... . ..... ...... . . .. . . ............. . . . . .. . . . . . . .. .................................. . . . . .... . ...... . . . .. ... . . .... . . . ... .. . . . .. .................... . . . . . . . ..... . . .. . . . . .. . ...... . . .. . . . ... . . . . . ..... . . . .. . .............. . . .. . ..... . . .. . .......... . . .. .. . ........ . ... ...... . .... . . . ... . .. . .. . . . . .... ... . . . .. .. .................... .. . . . . .. . ... .. . . . .. . . .
lowQualScore : 5555 5 55 444 0 55 0 888888 33 777777777777777777777777777777777 4 4 1 333 4 4 4 4444 4 4 11 66 0 4 66 0 0 0 7 7 88 44 444444 111111111111111111111111111111111 666666666 99 99 777 4 9999 99 0 22222 5 5 88 88 2 88 2222 22 8 55555555555555555555555555555555555555 22222 0 0 88 00 0 88888888888 00000000000000000 0 88 0 0 2 5 0 00000 88888 0 0 0 00 8 55 22 222 0 5555555 555 0 3333333333333 88888888 0 0 555 0 0 00 55 0 0 55 5 0000 0 7 0 7 3 000000 3 333 7 00000 888888 7 7 22 7 0 8888888888888 7 3 7 7 66 0 8 0 0 0 8 88 0000000000000000000000000000000000 8 0 0 8 8888 0 000000 0 0 5 55 555 0 0 0000 5 5 0 000 00 5 0 0 00 55555555555555555555 5 0 5 0 0 0 0 00000 5 0 00 5 0 5 5 00 5 555555 5 5 00 0 0 5 555 0 5 8 2 0 00000 0 6 7 99 7 99999999999999 0 7 00 0 66666 4 4 11 9 4444444444 4 4 33 11 4 22222222 4 888 888888 0 4444 1 0 0 000 7 55 0 88 0 0 8 1 2222 222 0 0 0 55 33 77777777777777777777 55 0 0 0 0 11 4 111 11 4 4 4 33 0 0 4
consensus : AGTGTTCTCCC----CAGGGC--CCTTAN-AGC-GC--TG-TATTT-TA---CAGCGCTATC-GAGTTT-CAGCGC-T--G-TGCTATCACT--A--C--AGC-GC-TGTGCTATN--GCTACCAGCACTGT-C-C-TATAAA----GATC-A-AT--TAGAACCGNGC-A--TTG-TGA-TGG-TTAA-AT--ATCTTGTAAG-GAAGCCA------TGTCA-G------------AG---------------A-TTTTTC-----AC--CC--CAT--AGC-ACATTT----TATGTTGC--A-TCGGACTA--TTTTTAACTCTCCT--GAAACGCCAGGTGG--TAGATTTT--CAACACCT-GATCTAC---------AG-----G-------GCC----------ACACATCG-CGGAA-ATCCGTC-GAA--ATTC-CACACC-TT--T------T-GAAAAC-----AC----GGC---CCCG--TTT-CANGGATCCTTGG-TTTTGT-----TAAAN--AACAA-ACA-ACT-AATGTGTGTTGTTAATTAAC-TTCACTC--AACCTGCANG--C-T--ATA---G-TTGTT--TT-AT---GCCTAATTAACAGGAGGATAACTTGAGTTNAAATTTATNCNAAACNACAAACTTGGTTAGNCATGCGTGTGGTTTAAAAACGACAATATTAGCATAGGGANGATCGCTTNCCAACAT-CAAATC---GAAAGTAGATTA---ATCTCGTT-AAT-GAAACAGTCGCTGAAT-AAAGGT-AA--AATT-TCATGAAA---TTA-A-TG--AAAATTT-A-ATAAGTT-TTAAACTTAATAAATGTTA-T-TGTAA-TAAATA-------AT-GAGT------------A-CTT---AGAGTTTTATTATGAC-CTATGG--CA-CATGAAATCATCGCGGTGAGGTAACNAAGANTTCATTAAAACTCACANTATCTCNCGCGAGGATAAGACAAACGGCTTCCATCACACGCTTGTGTGATCAATTGCAAATTGTGANCTTCCTANAACATGGCTTCTAATATAGGCGTTCCAGCTAAGCCACAAGGTAGANTCACTGTTCNAGGTATGAGACNGANGGAGCACTGATTCCCGGGACACCTNGCTGTTTNNGATCAAAGTTTAACGCCTAATACCTGCAAATATTACTGTAGGTAAAAGATTATGAAGTATGGGTTTTGAACAATTTTATTTACACNNTTNTTTNGTATACGTTTGGNTCATNTGTTGATCAAGTGA-GAGCACTGTGACTAATTGCTATCAGCACTGTC--C-TATAGTAA--G--AT--NTTANAACCGAGCATGTAAGCA-GTTA--T--CA-GCAA-TATTA--AA-A-----TA---TG-TTA-TCAA-TGA--A-TGC-T----T-CA-A---TA-T---AAA-C--A-TATTGAA-CTTAGT-AA---ATTTA--TA-CAAAGATCA-GTG-TAAACAAATNTTAAACA--ATGAAAAACAT-TAA-AC-CGCAG-CG--AC-GCGTTTC-C--A-C-----AAG--C-CTA--A-T-AAG-GTC-GTGT--CG-CGCGCTT-TAAA--ATA-C-AGCGCT-ATC-AAAAAATCCTGGG-GA-GA-ACACTG
Reference ( family-1486 ) : AGTGTTCTCCC----CAGGGC--CCTTAN-AGC-GC--TG-TATTT-TA---CAGCGCTATC-GAGTTT-CAGCGC-T--G-TGCTATCACT--A--C--AGC-GC-TGTGCTATN--GCTACCAGCACTGT-C-C-TATAAA----GATC-A-AT--TAGAACCGNGC-A--TTG-TGA-TGG-TTAA-AT--ATCTTGTAAG-GAAGCCA------TGTCA-G------------AG---------------A-TTTTTC-----AC--CC--CAT--AGC-ACATTT----TATGTTGC--A-TCGGACTA--TTTTTAACTCTCCT--GAAACGCCAGGTGG--TAGATTTT--CAACACCT-GATCTAC---------AG-----G-------GCC----------ACACATCG-CGGAA-ATCCGTC-GAA--ATTC-CACACC-TT--T------T-GAAAAC-----AC----GGC---CCCG--TTT-CANGGATCCTTGG-TTTTGT-----TAAAN--AACAA-ACA-ACT-AATGTGTGTTGTTAATTAAC-TTCACTC--AACCTGCANG--C-T--ATA---G-TTGTT--TT-AT---GCCTAATTAACAGGAGGATAACTTGAGTTNAAATTTATNCNAAACNACAAACTTGGTTAGNCATGCGTGTGGTTTAAAAACGACAATATTAGCATAGGGANGATCGCTTNCCAACAT-CAAATC---GAAAGTAGATTA---ATCTCGTT-AAT-GAAACAGTCGCTGAAT-AAAGGT-AA--AATT-TCATGAAA---TTA-A-TG--AAAATTT-A-ATAAGTT-TTAAACTTAATAAATGTTA-T-TGTAA-TAAATA-------AT-GAGT------------A-CTT---AGAGTTTTATTATGAC-CTATGG--CA-CATGAAATCATCGCGGTGAGGTAACNAAGANTTCATTAAAACTCACANTATCTCNCGCGAGGATAAGACAAACGGCTTCCATCACACGCTTGTGTGATCAATTGCAAATTGTGANCTTCCTANAACATGGCTTCTAATATAGGCGTTCCAGCTAAGCCACAAGGTAGANTCACTGTTCNAGGTATGAGACNGANGGAGCACTGATTCCCGGGACACCTNGCTGTTTNNGATCAAAGTTTAACGCCTAATACCTGCAAATATTACTGTAGGTAAAAGATTATGAAGTATGGGTTTTGAACAATTTTATTTACACNNTTNTTTNGTATACGTTTGGNTCATNTGTTGATCAAGTGA-GAGCACTGTGACTAATTGCTATCAGCACTGTC--C-TATAGTAA--G--AT--NTTANAACCGAGCATGTAAGCA-GTTA--T--CA-GCAA-TATTA--AA-A-----TA---TG-TTA-TCAA-TGA--A-TGC-T----T-CA-A---TA-T---AAA-C--A-TATTGAA-CTTAGT-AA---ATTTA--TA-CAAAGATCA-GTG-TAAACAAATNTTAAACA--ATGAAAAACAT-TAA-AC-CGCAG-CG--AC-GCGTTTC-C--A-C-----AAG--C-CTA--A-T-AAG-GTC-GTGT--CG-CGCGCTT-TAAA--ATA-C-AGCGCT-ATC-AAAAAATCCTGGG-GA-GA-ACACTG
gi|1 : GTTCTGCC----CAGA-C--CTTTTT-AACTGC--TG-TATTT-T----CAGCGCTATCAGAGTTT-TAGCGC-TCTG-GGCTAT-ACT--A--CC-AGC-ACGTCTGCTATGAAGCTACCTGCGCTGT-C-C-TATGAGAGAGGATC-AGAA--TAGA-TTGTGT-AATTTG-TGAATGG-TTGAGAT--ATCTTATAAA-GAAGGCA------TGTCTTG------------AGTGTCAATGATCAATAA-TTTCTC-----AA--CC--CAT--AGT--CATTTGAAATATGTTGT--AATCGGA--------TTAA-TCTC-T--GAAATGCCAGGTGG--TAGATTTT--CAACACC--GATCTACCCGCACCAGAGAAATAG-------GCCTATATAGGCAACACATAA-TGGAATACCCGTCCGAA--ATTC--ACACC-TT--TAGGCTTT-GAAAACCACTTAT----AGCTCTCCTG--TTTATAAGG-TCATTGG-TCTTGT-----TAAAGGAAACAC-ACATACT-AAT-TGTATC-TTAATTA-C-TTCACTCTTAACCTGCCAG--CGT--ATAAGAG-TTTTTACTT-ATT--GTCTAATTAACAGGAGGATAACTTGAGTTTAAATTTATTCCAAACCATAAAC--GGTTAGCTAT-CGTGTGGTTTAAAAACGACAATATTAGC----GGATGATAACTCTC-AACATGCAAATTTGTAAACGTAGATTATCTATTTTGTT-AAT-GAAA----------------GGT-AA--A-TA-TCATCCAACAGTCC-A-TG--AAGATCTCACATAAGTTATTAAACTTAATAA-TGGTA-TATGTAA--AAATATAGGGGGAT--AGT------------A-TTTTGGAGAGTTTTATTATGAC-CTATGGATCAGCATGAAATCATCGCGGTGAGGTAACAAAGAGTTCATTAAAACT---ATTATCTCCCGCGAGGATAAGACAA-CGGCTTCCATCACACGCT---GTGAT--AT-GCAAATTGTGAACTTTCTAAAACATGGCTTCTAATATAGGCGTTCCAGCTAAACCACAAGGTAGAGTCACTGTTCAAAGTATGAGACGGAGGGAGCATTGATTCCCTGGACACCTAGCTGTTTAAGATCAAAATTTAACGCCTAATA-CTGC-AATATTACTATAAGTAAAAGATTA-GAAGTATG------GAACAATTTTATTT-CACGTTTTTTTGGTATACGTTTGGGTCATGTGTTGATTAAGTAA-AATGATTGTGAGTAATTG-----AACGGTGTT--A-TATAGTAACCG--GT--TATATAACC-----TTTAAGTA-TTTA--
gi|1 : CTCTT--C-TATATTAT--A--AT--CATATGCACGAGGGTGTAAGCA-GTTACAT--TATGTTA-TATTATTAG-A-----TA---AG-AGA-TTGA-TAA--AATG--TACAAT-CA-A---TA-TGAGAAA-CCTA-TATTAAA-CTTAGT-AAGATATTTA--TA-CAAAGATCATGTGTTGAACAAAATTTAAAAC--ATGAAGA------AA-ACTCTCA--CG--A-------------G-A-----AAG--CTCTA--AGT-AA--GTC-TAGT--CG-CGCGCTC-T-AA--ATATC-AGTGCT-ATC-AAAAAATCCTGGG-GA-GATACACgttttagttgttcttttttctcttctatattataatcatatgcacgagggtgtaagcagttacattatgttatattattagataagagattgataaaatgtacaatcaatatgagaaacctatattaaacttagtaagatatttatacaaagatcatgtgttgaacaaaatttaaaacatgaagaaaactctcacgagaaagctctaagtaagtctagtcgcgcgctctaaatatcagtgctatcaaaaaatcctggggagatacac
gi|10 : gttctgcccagacctttttaactgctgtattttcagcgctatcagagttttagcgctctgggctatactaccagcacgtctgctatgaagctacctgcgctgtcctatgagagaggatcagaatagattgtgtaatttgtgaatggttgagatatcttataaagaaggcatgtcttgagtgtcaatgatcaataatttctcaacccatagtcatttgaaatatgttgtaatcggattaatctctgaaatgccaggtggtagattttcaacaccgatctacccgcaccagagaaataggcctatataggcaacacataatggaatacccgtccgaaattcacacctttaggctttgaaaaccacttatagctctcctgtttataaggtcattggtcttgttaaaggaaacacacatactaattgtatcttaattacttcactcttaacctgccagcgtataagagtttttacttattgtctaattaacaggaggataacttgagtttaaatttattccaaaccataaacggttagctatcgtgtggtttaaaaacgacaatattagcggatgataactctcaacatgcaaatttgtaaacgtagattatctattttgttaatgaaaggtaaatatcatccaacagtccatgaagatctcacataagttattaaacttaataatggtatatgtaaaaatatagggggatagtattttggagagttttattatgacctatggatcagcatgaaatcatcgcggtgaggtaacaaagagttcattaaaactattatctcccgcgaggataagacaacggcttccatcacacgctgtgatatgcaaattgtgaactttctaaaacatggcttctaatataggcgttccagctaaaccacaaggtagagtcactgttcaaagtatgagacggagggagcattgattccctggacacctagctgtttaagatcaaaatttaacgcctaatactgcaatattactataagtaaaagattagaagtatggaacaattttatttcacgtttttttggtatacgtttgggtcatgtgttgattaagtaaaatgattgtgagtaattgaacggtgttatatagtaaccggttatataacctttaagtatttagttttagttgttcttttttTGTAAGCA-GTTA-----CA-GCAA--ATTA--AA-AATATTCA---TG-TTAATCA--TAATCA-TGC-T----T-CA-AATATA-T---AAA-C--AGTATTAAA-CTTAGT-AA---ATTTAATTAGCAAAGATCA-----------AATGTAAAACATGATAAAGAACAT-TAA-AC-CGCAG-CG--ACCGCGTTTT-C--AGC-----AAG--C-CTA--G-T-AAG-GTCCGTGTTGCG-CGCGCTT-CTAA--ATA-C-AGCGCT-ATCAAAAAAATCCTGGG-GA-
gi|11 : actttcgannnnnnnnnnnnnnnnnnnnnnnnnttttttgtatatattacacagagggcacatctTGTTCTCCC----CAGG-C--CCTTAA-AGC-GC--TG-TGCTT-TA---CAGCGCTATC-AAGT-----GAG-------------------------AGC-AC-TGTGCTATT--GCTATCAGCACTGT-C-C-TATAAA----GATC-A-AT--TAGAACCGAGC-A--T
gi|11 : ATCAAGTGA-GAGCACTGTG-CTA-TTGCTATCAGCACTGTC--C-TATA--AA--G--ATCAATTAGAACCGAGCATGTAAGCA-GTTA--TTACA-TCAA-TATTA--AA-A-----TA---TG-TTA-TCAA-TGA--A-TGC-T----T-CA-A---T--T---AAA-C--A-TAATGAA-CTTAGT-AA---A-TTG--TA-CAAAGATCA-GTG-TAAAC-AATATTAAAC---ATGAAAAACA---AA-CC-CGCAG-CA--AT-ACGTTT--C--A-T-----AA------TA--A-T-AAG-GTC-gtaagcagttattacatcaatattaaaatatgttatcaatgaatgcttcaattaaacataatgaacttagtaaattgtacaaagatcagtgtaaacaatattaaacatgaaaaacaaacccgcagcaatacgtttcataataataaggtcaaatcctggggagaacactgg
gi|11 : tgttctccccaggcccttaaagcgctgtgctttacagcgctAAATCCTGGG-GA-GA-ACACTGaaatcctggggagaacactgg
gi|12 : tgttctccccaggcccttaaagcgctgtgctttacagcgctatcaagtgagagcactgtgctattgctatcagcactgtcctataaagatcaattagaaccgagcatgtaagcagttattacatcaatattaaaatatgttatcaatgaatgcttcaattaaacataatgaacttagtaaattgtacaaagatcagtgtaaacaatattaaacatgaaaaacaaacccgcagcaatacgtttcataataataaggtc---AAA-C--A-TATTGAA-CTTAGT-CA---ATT-A--TA-CAAAGATCA-ATG-TAAACAAAT-TTAAACA---TGAAAAACAT-TAA-AC-CGCAG-TG--AC-GCGTTTCAC--AAC-----AAG--CTCTC--A-T-AAG-GTC-GTGC--CG-CGCGCTC-TAAA---TA-C-AACGCT-ATC-AAAAAATCCTGGG-GA-GA-ACACTGg
gi|13 : aCTCCC----CAGG-C--CCTTAA-AGC-GC--TG-TGCTT-TA---CAGCGCTATA-AAGT-----GAG-------------------------AGG-AC-TGTGCTATT--GCTATCAGCACTGT-C-C-TATAAA----GATC-A-AT--TAGAACCGAGC-A--T
gi|14 : ACAGTCACTGAAT-AAAGGT-AA--AATT-TCATAAAA----------------GTTG-A-ATAAGTT-T-AAACGTAATAAATGTTA-T-TGTAA-TGAATA-------AT-AAG----------------TT---ACAG----ATTAC-AT-CTATTG--CA-Cgtaagcagtta
gi|15 : tgtAA-ATT-ACCATGTAAG--AAGCCA------TGTCA-GTGTCAATTTCAAAG---------------T-TTTTTC-----AG--TC--CAT--AGC-ACAGTG----TACGTTGC--A-ttaa
gi|16 : ACAGTCGCTGAAT-AAAGGT-AA--AATT-CCACGAAA---TCA-ACTG--AAAATTT-A-ATAAGTT-atcatattcgaaaaatgtacag
gi|18 : tcatattcgaaaaatgtGTGTTCTCCCGGCCCAGA-C--CCTTAA-AGC-GC--TG-TGCTT-TA---CAGC
gi|2 : AGTGTTTCTCC----CAGAGCGACCTTTT-ACC-GC--TG-TATTT-TTT--CGGCGCTATC-GAGTTTTCAGCAC-T--C-TGCT-TCAAT--A--C--AGC-GC-TCTGC-ATA--GCTACCAGCGCT-T-C-C-T-TAAA----GATC-A-AT--TAGATTTGTGC-A--TTG-TGA-TGG-TT-A-AT--ATCTTA-AAG-GAAGCCA-------GCCT-G------------AG---------------A-TTTTTC-----ACGTAC--CAT--AGCTTCATTT----TATGTTGC--A-TCAGATTA--TTTCCAACTCTCCT--GAAATGCCAGG-AG--TAGATTTT--TCACACCT-GATCTCC---------AG---------------------------CACATC--TGGAA-ATCCGTC-GAA--ATTC-CACACT-TTAGT------TGGAAAAC-----ACTAGAAGC---TCTG--TTT-CGAGGATCCTTAG-CTTTGT-----TAAAT--AACAA-ACA-ACC-AATGTGTGTTCTTAATTAAC-TTCACTCA-AACCTGCAAG--C-T--ATA---G-TTGTT--CT-AT------TAA--------AGGATAA-TTGAGTTAAAA---ATGCGAAA-AACAAACTTAATTAAGCATGCGTGTGGTT--AAAACAAC-ATATTAGCATAGGGAGAATCACTTCTCACCAT-CAAATC---GAAAGTAGATTA---ATCTTGTTGAATCGAAAGAA----TGAAT-AAATGT-CATCCACA-TCATGAAA---TTA-A-TGCAAAAATTT-A-ATAAGTT-TTAAACTTAATAAATGTTA-T-CG-AA-CAAATA-------ATCGAGT------------G-CTT---AGAGTTTTATTATGAC-A-ATGA--CA-CATGAAATCATCGCGGT------ACTAAAATTTT-TT--AACTCACAATATCTCACAC----AT-AGACAAACGGCTTCCATCACA-ACTTGTGTGATCAATTGCAAATTGTGACTTTCCTATA--ATGGCTTC--------------------AGCCAC-AGGTAGATTTAC-GTTCCAGGTAT-AGACTGATG-----CTGATTCCTGGAACACCTCGCTGTTTTTAATCAAAG-TTAACGCCTAATACCTGCAAATATTAC-GTAGGTAAA--ATTATGAAGTATGGGTTTTGAACAA-TTTATTTACACCATTGTTTTGTATATTTTT--TTCATTTGTTGAT--AGT----AATATTGT-ATTAATTGGTA-----ACTGTTAAC-TATAGTAA--G--GT--TTTATAATTAA--AAGTAAGCA-GTTA-----CA-GCAA-TATTA--AATA-----TA---TG-T---TCAA-TCA--A-TGC-T----T-CA-A---TA-T---AAA-C--A-TATTAAA-CTTAGTAAA---ATTCA--TA-CAAAGATCA-GTG-TTAACCAATTTTAAGCA--ATGAAAAACAT-TAAGAC-CGCAG-CG--AC-GCGTTTC-C----C-----AAG--C-CTA--G-T-AAGCGTC-GTGT--CG-CGCGCTA-TAAA--ATA-C-AGCGCC-CTC-AAAAATCCCTGGG-GA-GA-ACACTG
gi|3 : AAGAGAAGCCA------TGTCA-T------------TGTC-------------A-TTTTTTTAATAAT--CCATCATTTAGC-A-ATGTG---TATGTTACTAA-TCAGACTAATTTTTTAGCTCTTCTATGAAA-ACCAGGTGGCGTAGATTTTATCAGCACTTTGATTTGC---------AA-----GAGTACGAGCC----------CGACACCGTCAAAA-ATCTGTC-AAATAATTTTCACACCCTT--T------T-GAAAAC-----AT----GAT---CTTGTTTTT-CATGGAT-CTTGATTTTTGTTTAAATAAAA--AGCAACACA-AATGAATGTGTAGTGTTAATTAACGTTCACTG--AACCTGCATGCTC-T--ATA---GCTTGTT--TTAATAAAGCTTAATTAA
gi|3 : GCTGAATTAAAGGTTAA--AATTGTCATTAAA---TTACA-TA--AAA--TT-A-ATAAGGT-TTAAACACGTTAAATGATT-T-TGTAAATAAATA-------AT-AAGTTATCAGCTAGTCATCTA---AGAGTTTTGTAATGGCTCTAT----CA-CATGAAATCATattgggatgcatcctctctagattctgttagggaagattaactttacaactcttagcctccgacaaacaaagtaaaaacgctttgtatatcgaaaaattaacacgagtcgcgcgagtatgctgaattaaaggttaaaattgtcattaaattacataaaattaataaggtttaaacacgttaaatgattttgtaaataaataataagttatcagctagtcatctaagagttttgtaatggctctatcacatgaaatcatgctgtataaaat
gi|4 : aagagaagccatgtcattgtcatttttttaataatccatcatttagcaatgtgtatgttactaatcagactaattttttagctcttctatgaaaaccaggtggcgtagattttatcagcactttgatttgcaagagtacgagcccgacaccgtcaaaaatctgtcaaataattttcacacccttttgaaaacatgatcttgtttttcatggatcttgatttttgtttaaataaaaagcaacacaaatgaatgtgtagtgttaattaacgttcactgaacctgcatgctctatagcttgttttaataaagcttaattaaattgggatgcatcctctctagattctgttagggaagattaactttacaactcttagcctccgacaaacaaagtaaaaacgctttgtatatcgaaaaattaacacgagtcgcgcgagtatAGTGTTCTCT-------AGGC--CATTTT-AGC-GC--TG-TATTT-TA---AGGCGCTAT--GAGTTT-CAGCAC-T--G-TGCTATCACT--ACTC--AGT-G--TCTGCTATA--AGTACCAGCAGTGT-C-C-TATAAG----GATC-A-ATAGTAGATCTGTGT-AC-TTG-TGA-TGG-TTAA-AT--ATCCTGTAA--GAAGCCATGCTGGTGTCA-A------------AG---------------A-TTTTCC------C--GC--CAT--AGC-ACATTT----TTTG-TGC--A-gctgtataaaat
gi|4 : gATGTAAGCAAGTTA------A-GCAA-TATTA--AA-A-----AAAATTG-TTA-TCAAGTGA--A-TGC-T----T-CA-A---TAAT---AAA-C--AATATTGAAACTTAGTTAA---ACTTA--TA-CAAAGATCA--TG-TAAACAAAT-TTCAACA---TGAAAAATAT-TAA-CT-TGCAGGCGGTAC-GCGTTCT-C--A-CGAGACAAG--A-CTGCTA-T-AGG-CTC-GTCC--TG-CGCGCTTCTAAATTATA-C-AGCGCT-AT--AAAAAATCCTGGG-GA-GA-ACACTGgttaatgcaatgtaagcaagttaagcaatattaaaaaaaattgttatcaagtgaatgcttcaataataaacaatattgaaacttagttaaacttatacaaagatcatgtaaacaaatttcaacatgaaaaatattaacttgcaggcggtacgcgttctcacgagacaagactgctataggctcgtcctgcgcgcttctaaattatacagcgctataaaaaatcctggggagaacactgga
gi|5 : gagtgttctctaggccattttagcgctgtattttaaggcgctatgagtttcagcactgtgctatcactactcagtgtctgctataagtaccagcagtgtcctataaggatcaatagtagatctgtgtacttgtgatggttaaatatcctgtaagaagccatgctggtgtcaaagattttcccgccatagcacattttttgtgcagttaatgcaAGTGTTCTCCC----CAAGGC--CCTTAATAGC-GC--TG-TATTT-TAACCCAGCGCTATT-GAGTTTTCAGCAC-T--GGTGCTATCACTT-A--CCCAGT-GC-TTTGCTATAA-GCTACCAGCACTGT-CGC-TATAAA----GATC-A--T--TAGA-TTGTGT-A--TTG-TGA-TGGGTTAA-ATTTATCTTGTAAG-AAAGTCA------TGTCA-A------------AG---------------ATTTTTTC-----AC--CC--CA---AGC-ACATTT----TATGTTGC--A-ga
gi|5 : ATGTAAGCA-GTTA--C--AA-GCAAATATTA--AA-A-----AA---TG-TTA-TCAA--GA--A-TGC-T----TTCA-A---TA-T---AAAGA--A-TATTGAA-GTTAGT-AA---A-TTA--TA-ACAAGATCA-ATG-TAAACAAATTTAAAAC---ATGAAAAACAT-TAA-AC-CGCAA-TG--AA-GCGTTTCACA-A-C-----AAGCTC-CTA--A-T-AAG-GTT-GTGC--CG-CGCGCGT-CAAA--ATA-CAAGCGCTAATA-AAAAAATCCTGGG-GAGGA-ACACTattatatcaaatgtaagcagttacaagcaaatattaaaaaatgttatcaagaatgctttcaatataaagaatattgaagttagtaaattataacaagatcaatgtaaacaaatttaaaacatgaaaaacattaaaccgcaatgaagcgtttcacaacaagctcctaataaggttgtgccgcgcgcgtcaaaatacaagcgctaataaaaaaatcctggggaggaacact
gi|6 : agtgttctccccaaggcccttaatagcgctgtattttaacccagcgctattgagttttcagcactggtgctatcacttacccagtgctttgctataagctaccagcactgtcgctataaagatcattagattgtgtattgtgatgggttaaatttatcttgtaagaaagtcatgtcaaagattttttcaccccaagcacattttatgttgcaattatatcaaAGTGTTCTCCC----CAGGCC--CTTTTT-AGC-GC--TG-TATTTCTA---CAGCGCTATT-GAGTTT-CAGCACCT--G-TGCTATCACTTAA--C--AGCTGC-TGGGCTATAA-GCTACCAGCACTGTTC-C-TATAAA----GATCCA-AT-----AA--GTGTTA--TTGCTGA-TGG-TTAA-AT--ATCTTGTAAG-AAAGTCA------TGTCA-A------------AG---------------A-TTTTGC-----AC--CC--CTT--AGC-A-A-TT----TATGTTGC--A-
gi|6 : GCACC--C--C-T-TAGCAA--TTTAT--GTTGCAATTAATCATG---AC--GTTA-----CA-TCAA-TATTA--AA-A-----C----TG-TTA-TCAA--GA--A-TGC-T------CACA---TA-T---AAA-C--A-TAT-GAA-GTTAGT-AA---AATTA--TA-CAAAGATCA-ATG-TAAACAAATTT--AAC---ATAGAAAACATATAA-AC-CGCAA-CG--AC-GCGTTTCACAAA-C-----AAG--CTCTA--A-T--AG-GTC-GT-T--CGCCGCCCTC-T-AA--ATA-C-AGTGCT-ATC-AAAGA--CCTGGGCGA-GA-ACACTGattaatcatgacgttacatcaatattaaaactgttatcaagaatgctcacatataaacatatgaagttagtaaaattatacaaagatcaatgtaaacaaatttaacatagaaaacatataaaccgcaacgacgcgtttcacaaacaagctctaataggtcgttcgccgccctctaaatacagtgctatcaaagacctgggcgagaacactg
gi|7 : agtgttctccccaggccctttttagcgctgtatttctacagcgctattgagtttcagcacctgtgctatcacttaacagctgctgggctataagctaccagcactgttcctataaagatccaataagtgttattgctgatggttaaatatcttgtaagaaagtcatgtcaaagattttTTGC--AATGGGACTA--TTTTTCACTCTCCT--GGG-CGCCGAGTGG--TAGATTTT----ACACCT-GATCTAC---------C---------------CC----------ACACATCT-CA-AA-ATTTGTT-GAA--ATTC--ACACC-TT--T--------GAAATC-----AC----GCT---CCCA--ATT-CACGGATCCTTGA-TTTTGT-----TAAAC----CAA-ACA-ACT-AA--TGTGTTGTTAATT-AC------------CCTGCATG--C-TGAATA---G-T
gi|7 : accacctgtccaatatactCGCTTGCCAATAT-CAAA-------AAGTAGA--A---ATCGCGTT---T-GATACAATCGCCGAAT-AAAGGT-AA--AATT-TCATGAA-----TACA-TG--AAAATTTGA-AT-AGTT-TT-AATTTAATAAAT-TTATT-TGTAA-TAAACA-------AT-GAGT------------A-------AGAGTTTTATTATTGC-CTgctgaaaaaacgaattattccccttgccgtttaaaacgcttgccaatatcaaaaagtagaaatcgcgtttgatacaatcgccgaataaaggtaaaatttcatgaatacatgaaaatttgaatagttttaatttaataaatttatttgtaataaacaatgagtaagagttttattattgccttaa
gi|8 : accacctgtccaatatactttgcaatgggactatttttcactctcctgggcgccgagtggtagattttacacctgatctaccccacacatctcaaaatttgttgaaattcacacctttgaaatcacgctcccaattcacggatccttgattttgttaaaccaaacaactaatgtgttgttaattaccctgcatgctgaatagtgctgaaaaaacgaattattccccttgccgtttaaaaGTTCTCCC----CAGGGC--CCTTAC-AGC-GCGTTGCTATAT------CAGCGCTATC-AAA-----AGTG--------------A----A--G--AGC-AC-TGTGCTAT---GCTATCAGCACTGT-C-CCTATAAA----GAC----AT--TAGAACCGAGC-A--Ttaa
gi|8 : AAGTGAAGAGCACTGTG-CTA--TGCTATCAGCACTGTC--CCTATA--AA--G--AC--ATTAGAACCGAGCATGTAAGCA-GTTA--TTACA-GCAA-TATTA--GACA-----TA---TGATTA-TCAA-TGA--A-TGCTT----T-CA-A---T--T----AA-C--A-TA-AGAA-CTTAGT-AA---A-TTG--TA-CCAAGATCA-GTG-TAAAC-AATATTAAAC---ATGAAAAAC----AA-AC-CACAG-CG--AT-ACGTTT--C--A-C-----AA------TA--A-TAAAG-GTC-GTGT--CA-TGCGCTT---AA--ATA-C-AGCGC--ATT-ACAGAATCCTGGG-GA-GA-ACACTgtaagcagttattacagcaatattagacatatgattatcaatgaatgctttcaattaacataagaacttagtaaattgtaccaagatcagtgtaaacaatattaaacatgaaaaacaaaccacagcgatacgtttcacaataataaaggtcgtgtcatgcgcttaaatacagcgcattacagaatcctggggagaacact
gi|9 : gttctccccagggcccttacagcgcgttgctatatcagcgctatcaaGTTCTCCC----CAGG-C--CCTTAA-AGC-GC--TG-TGTCTATA---CAGCGCTATC-A----------------G-TG----------A--G--AGC-AC-TGTGCTATT--GCTATCAGCACTGT-C-C-TATAAA----GATC-A-AT--TAGAACCGAGC-A--T
gi|9 : ATCA-GTGA-GAGCACTGTG-CTA-TTGCTATCAGCACTGTC--C-TATA--AA--G--ATCAATTAGAACCGAGCATGTAAGCA-GTTA--TA-CA-GCAA-TATTA--GA-A-----TA---TG-TTA-TCAA-TGA--A-TGC------T-CA-A---TA-----AAA-C----TAATGAT-CTTAGT-AA---A---G--TA-CAAAGATCA-GTG-TAAAACAATATTAAAC---ATGAAAAACA---AA-CC-CGCAG-GG--AT-ACGTTT--C--A-C-----AA------TA--A-T-AAG-GTC-GTGT--CA-TGCGATT-T-AA--ATA-C-AGCGCT-ATT-ACAAAATCCTGGG-GA-GA-ACACTGgtaagcagttatacagcaatattagaatatgttatcaatgaatgctcaataaaactaatgatcttagtaaagtacaaagatcagtgtaaaacaatattaaacatgaaaaacaaacccgcagggatacgtttcacaataataaggtcgtgtcatgcgatttaaatacagcgctattacaaaatcctggggagaacactg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATTACATGTACATGAAATCATCGATCTCACGTTTATAACTCGCAAAAATATCT
Alignments
lowQualScore : 11111111111111111111111111111111111111
lowQualScore : 1 111111 999999999999999999999999999999999 222 11 11 111111 666666666666666666666666666666666 111111111 111 1111 1 11111 11 11 11 2222 11 55555555555555555555555555555555555555 22222 1 1 11 22 1 44444444444 44444444444444444 11 1 1 22222 11111 1 1 1 11 11 222 1111111 111 1 5555555555555 11111111 1 222 11 11 1 11 1 2222 1 333333 222 22222 2222222222222 1 11 7777777777777777777777777777777777 2222 1 222222 1 11 222 2222 1 1 1 222 11 1 11 66666666666666666666 1 1 1 22222 1 1 1 1 11 1 222222 1 1 111 22222 22222222222222 33333 1111111111 11111111 1 2222 111 33333333333333333333 111
lowQualScore : 8888 7 55 666 4 55 4 555555 66 222222222222222222222222222222222 4 4 1 000 4 4 4 9999 4 4 66 88 1 4 00 8 8 8 1 6 55 77 666666 444444444444444444444444444444444 999999999 77 77 111 1 7777 66 0 44444 2 2 33 33 3 33 3333 33 0 11111111111111111111111111111111111111 55555 0 0 33 55 0 66666666666 99999999999999999 2 33 0 1 3 2 0 55555 88888 0 0 0 22 8 66 33 666 1 8888888 777 0 1111111111111 44444444 5 1 111 1 1 66 88 1 5 88 5 4444 1 0 1 6 3 888888 7 333 0 44444 888888 6 6 99 6 1 9999999999999 1 3 6 6 11 1 0 1 8 8 0 11 1111111111111111111111111111111111 0 5 8 0 2222 0 999999 1 1 5 88 000 1 1 3333 5 5 5 111 88 5 1 1 88 88888888888888888888 5 1 5 1 5 1 1 66666 2 1 22 5 5 5 5 88 5 999999 5 5 22 1 1 2 888 1 6 0 3 8 11111 5 5 0 77 5 00000000000000 1 1 55 4 66666 4 4 66 8 5555555555 4 4 66 66 4 11111111 4 777 999999 4 9999 1 4 8 777 4 55 4 88 4 8 8 1 4444 000 4 4 4 55 66 88888888888888888888 55 4 4 4 4 66 4 777 66 4 4 4 66 4 4 4
lowQualScore : .... . .. ... . .. . ...... .. ................................. . . . ... . . . .... . . .. .. . . .. . . . . . .. .. ...... ................................. ......... .. .. ... . .... .. . ..... . . .. .. . .. .... .. . ...................................... ..... . . .. .. . ........... ................. . .. . . . . . ..... ..... . . . .. . .. .. ... . ....... ... . ............. ........ . . ... . . .. .. . . .. . .... . . . . . ...... . ... . ..... ...... . . .. . . ............. . . . . .. . . . . . . .. .................................. . . . . .... . ...... . . . .. ... . . .... . . . ... .. . . . .. .................... . . . . . . . ..... . . .. . . . . .. . ...... . . .. . . . ... . . . . . ..... . . . .. . .............. . . .. . ..... . . .. . .......... . . .. .. . ........ . ... ...... . .... . . . ... . .. . .. . . . . .... ... . . . .. .. .................... .. . . . . .. . ... .. . . . .. . . .
lowQualScore : 5555 5 55 444 0 55 0 888888 33 777777777777777777777777777777777 4 4 1 333 4 4 4 4444 4 4 11 66 0 4 66 0 0 0 7 7 88 44 444444 111111111111111111111111111111111 666666666 99 99 777 4 9999 99 0 22222 5 5 88 88 2 88 2222 22 8 55555555555555555555555555555555555555 22222 0 0 88 00 0 88888888888 00000000000000000 0 88 0 0 2 5 0 00000 88888 0 0 0 00 8 55 22 222 0 5555555 555 0 3333333333333 88888888 0 0 555 0 0 00 55 0 0 55 5 0000 0 7 0 7 3 000000 3 333 7 00000 888888 7 7 22 7 0 8888888888888 7 3 7 7 66 0 8 0 0 0 8 88 0000000000000000000000000000000000 8 0 0 8 8888 0 000000 0 0 5 55 555 0 0 0000 5 5 0 000 00 5 0 0 00 55555555555555555555 5 0 5 0 0 0 0 00000 5 0 00 5 0 5 5 00 5 555555 5 5 00 0 0 5 555 0 5 8 2 0 00000 0 6 7 99 7 99999999999999 0 7 00 0 66666 4 4 11 9 4444444444 4 4 33 11 4 22222222 4 888 888888 0 4444 1 0 0 000 7 55 0 88 0 0 8 1 2222 222 0 0 0 55 33 77777777777777777777 55 0 0 0 0 11 4 111 11 4 4 4 33 0 0 4
consensus : AGTGTTCTCCC----CAGGGC--CCTTAN-AGC-GC--TG-TATTT-TA---CAGCGCTATC-GAGTTT-CAGCGC-T--G-TGCTATCACT--A--C--AGC-GC-TGTGCTATN--GCTACCAGCACTGT-C-C-TATAAA----GATC-A-AT--TAGAACCGNGC-A--TTG-TGA-TGG-TTAA-AT--ATCTTGTAAG-GAAGCCA------TGTCA-G------------AG---------------A-TTTTTC-----AC--CC--CAT--AGC-ACATTT----TATGTTGC--A-TCGGACTA--TTTTTAACTCTCCT--GAAACGCCAGGTGG--TAGATTTT--CAACACCT-GATCTAC---------AG-----G-------GCC----------ACACATCG-CGGAA-ATCCGTC-GAA--ATTC-CACACC-TT--T------T-GAAAAC-----AC----GGC---CCCG--TTT-CANGGATCCTTGG-TTTTGT-----TAAAN--AACAA-ACA-ACT-AATGTGTGTTGTTAATTAAC-TTCACTC--AACCTGCANG--C-T--ATA---G-TTGTT--TT-AT---GCCTAATTAACAGGAGGATAACTTGAGTTNAAATTTATNCNAAACNACAAACTTGGTTAGNCATGCGTGTGGTTTAAAAACGACAATATTAGCATAGGGANGATCGCTTNCCAACAT-CAAATC---GAAAGTAGATTA---ATCTCGTT-AAT-GAAACAGTCGCTGAAT-AAAGGT-AA--AATT-TCATGAAA---TTA-A-TG--AAAATTT-A-ATAAGTT-TTAAACTTAATAAATGTTA-T-TGTAA-TAAATA-------AT-GAGT------------A-CTT---AGAGTTTTATTATGAC-CTATGG--CA-CATGAAATCATCGCGGTGAGGTAACNAAGANTTCATTAAAACTCACANTATCTCNCGCGAGGATAAGACAAACGGCTTCCATCACACGCTTGTGTGATCAATTGCAAATTGTGANCTTCCTANAACATGGCTTCTAATATAGGCGTTCCAGCTAAGCCACAAGGTAGANTCACTGTTCNAGGTATGAGACNGANGGAGCACTGATTCCCGGGACACCTNGCTGTTTNNGATCAAAGTTTAACGCCTAATACCTGCAAATATTACTGTAGGTAAAAGATTATGAAGTATGGGTTTTGAACAATTTTATTTACACNNTTNTTTNGTATACGTTTGGNTCATNTGTTGATCAAGTGA-GAGCACTGTGACTAATTGCTATCAGCACTGTC--C-TATAGTAA--G--AT--NTTANAACCGAGCATGTAAGCA-GTTA--T--CA-GCAA-TATTA--AA-A-----TA---TG-TTA-TCAA-TGA--A-TGC-T----T-CA-A---TA-T---AAA-C--A-TATTGAA-CTTAGT-AA---ATTTA--TA-CAAAGATCA-GTG-TAAACAAATNTTAAACA--ATGAAAAACAT-TAA-AC-CGCAG-CG--AC-GCGTTTC-C--A-C-----AAG--C-CTA--A-T-AAG-GTC-GTGT--CG-CGCGCTT-TAAA--ATA-C-AGCGCT-ATC-AAAAAATCCTGGG-GA-GA-ACACTG
Reference ( family-1486 ) : AGTGTTCTCCC----CAGGGC--CCTTAN-AGC-GC--TG-TATTT-TA---CAGCGCTATC-GAGTTT-CAGCGC-T--G-TGCTATCACT--A--C--AGC-GC-TGTGCTATN--GCTACCAGCACTGT-C-C-TATAAA----GATC-A-AT--TAGAACCGNGC-A--TTG-TGA-TGG-TTAA-AT--ATCTTGTAAG-GAAGCCA------TGTCA-G------------AG---------------A-TTTTTC-----AC--CC--CAT--AGC-ACATTT----TATGTTGC--A-TCGGACTA--TTTTTAACTCTCCT--GAAACGCCAGGTGG--TAGATTTT--CAACACCT-GATCTAC---------AG-----G-------GCC----------ACACATCG-CGGAA-ATCCGTC-GAA--ATTC-CACACC-TT--T------T-GAAAAC-----AC----GGC---CCCG--TTT-CANGGATCCTTGG-TTTTGT-----TAAAN--AACAA-ACA-ACT-AATGTGTGTTGTTAATTAAC-TTCACTC--AACCTGCANG--C-T--ATA---G-TTGTT--TT-AT---GCCTAATTAACAGGAGGATAACTTGAGTTNAAATTTATNCNAAACNACAAACTTGGTTAGNCATGCGTGTGGTTTAAAAACGACAATATTAGCATAGGGANGATCGCTTNCCAACAT-CAAATC---GAAAGTAGATTA---ATCTCGTT-AAT-GAAACAGTCGCTGAAT-AAAGGT-AA--AATT-TCATGAAA---TTA-A-TG--AAAATTT-A-ATAAGTT-TTAAACTTAATAAATGTTA-T-TGTAA-TAAATA-------AT-GAGT------------A-CTT---AGAGTTTTATTATGAC-CTATGG--CA-CATGAAATCATCGCGGTGAGGTAACNAAGANTTCATTAAAACTCACANTATCTCNCGCGAGGATAAGACAAACGGCTTCCATCACACGCTTGTGTGATCAATTGCAAATTGTGANCTTCCTANAACATGGCTTCTAATATAGGCGTTCCAGCTAAGCCACAAGGTAGANTCACTGTTCNAGGTATGAGACNGANGGAGCACTGATTCCCGGGACACCTNGCTGTTTNNGATCAAAGTTTAACGCCTAATACCTGCAAATATTACTGTAGGTAAAAGATTATGAAGTATGGGTTTTGAACAATTTTATTTACACNNTTNTTTNGTATACGTTTGGNTCATNTGTTGATCAAGTGA-GAGCACTGTGACTAATTGCTATCAGCACTGTC--C-TATAGTAA--G--AT--NTTANAACCGAGCATGTAAGCA-GTTA--T--CA-GCAA-TATTA--AA-A-----TA---TG-TTA-TCAA-TGA--A-TGC-T----T-CA-A---TA-T---AAA-C--A-TATTGAA-CTTAGT-AA---ATTTA--TA-CAAAGATCA-GTG-TAAACAAATNTTAAACA--ATGAAAAACAT-TAA-AC-CGCAG-CG--AC-GCGTTTC-C--A-C-----AAG--C-CTA--A-T-AAG-GTC-GTGT--CG-CGCGCTT-TAAA--ATA-C-AGCGCT-ATC-AAAAAATCCTGGG-GA-GA-ACACTG
gi|1 : GTTCTGCC----CAGA-C--CTTTTT-AACTGC--TG-TATTT-T----CAGCGCTATCAGAGTTT-TAGCGC-TCTG-GGCTAT-ACT--A--CC-AGC-ACGTCTGCTATGAAGCTACCTGCGCTGT-C-C-TATGAGAGAGGATC-AGAA--TAGA-TTGTGT-AATTTG-TGAATGG-TTGAGAT--ATCTTATAAA-GAAGGCA------TGTCTTG------------AGTGTCAATGATCAATAA-TTTCTC-----AA--CC--CAT--AGT--CATTTGAAATATGTTGT--AATCGGA--------TTAA-TCTC-T--GAAATGCCAGGTGG--TAGATTTT--CAACACC--GATCTACCCGCACCAGAGAAATAG-------GCCTATATAGGCAACACATAA-TGGAATACCCGTCCGAA--ATTC--ACACC-TT--TAGGCTTT-GAAAACCACTTAT----AGCTCTCCTG--TTTATAAGG-TCATTGG-TCTTGT-----TAAAGGAAACAC-ACATACT-AAT-TGTATC-TTAATTA-C-TTCACTCTTAACCTGCCAG--CGT--ATAAGAG-TTTTTACTT-ATT--GTCTAATTAACAGGAGGATAACTTGAGTTTAAATTTATTCCAAACCATAAAC--GGTTAGCTAT-CGTGTGGTTTAAAAACGACAATATTAGC----GGATGATAACTCTC-AACATGCAAATTTGTAAACGTAGATTATCTATTTTGTT-AAT-GAAA----------------GGT-AA--A-TA-TCATCCAACAGTCC-A-TG--AAGATCTCACATAAGTTATTAAACTTAATAA-TGGTA-TATGTAA--AAATATAGGGGGAT--AGT------------A-TTTTGGAGAGTTTTATTATGAC-CTATGGATCAGCATGAAATCATCGCGGTGAGGTAACAAAGAGTTCATTAAAACT---ATTATCTCCCGCGAGGATAAGACAA-CGGCTTCCATCACACGCT---GTGAT--AT-GCAAATTGTGAACTTTCTAAAACATGGCTTCTAATATAGGCGTTCCAGCTAAACCACAAGGTAGAGTCACTGTTCAAAGTATGAGACGGAGGGAGCATTGATTCCCTGGACACCTAGCTGTTTAAGATCAAAATTTAACGCCTAATA-CTGC-AATATTACTATAAGTAAAAGATTA-GAAGTATG------GAACAATTTTATTT-CACGTTTTTTTGGTATACGTTTGGGTCATGTGTTGATTAAGTAA-AATGATTGTGAGTAATTG-----AACGGTGTT--A-TATAGTAACCG--GT--TATATAACC-----TTTAAGTA-TTTA--
gi|1 : CTCTT--C-TATATTAT--A--AT--CATATGCACGAGGGTGTAAGCA-GTTACAT--TATGTTA-TATTATTAG-A-----TA---AG-AGA-TTGA-TAA--AATG--TACAAT-CA-A---TA-TGAGAAA-CCTA-TATTAAA-CTTAGT-AAGATATTTA--TA-CAAAGATCATGTGTTGAACAAAATTTAAAAC--ATGAAGA------AA-ACTCTCA--CG--A-------------G-A-----AAG--CTCTA--AGT-AA--GTC-TAGT--CG-CGCGCTC-T-AA--ATATC-AGTGCT-ATC-AAAAAATCCTGGG-GA-GATACACgttttagttgttcttttttctcttctatattataatcatatgcacgagggtgtaagcagttacattatgttatattattagataagagattgataaaatgtacaatcaatatgagaaacctatattaaacttagtaagatatttatacaaagatcatgtgttgaacaaaatttaaaacatgaagaaaactctcacgagaaagctctaagtaagtctagtcgcgcgctctaaatatcagtgctatcaaaaaatcctggggagatacac
gi|10 : gttctgcccagacctttttaactgctgtattttcagcgctatcagagttttagcgctctgggctatactaccagcacgtctgctatgaagctacctgcgctgtcctatgagagaggatcagaatagattgtgtaatttgtgaatggttgagatatcttataaagaaggcatgtcttgagtgtcaatgatcaataatttctcaacccatagtcatttgaaatatgttgtaatcggattaatctctgaaatgccaggtggtagattttcaacaccgatctacccgcaccagagaaataggcctatataggcaacacataatggaatacccgtccgaaattcacacctttaggctttgaaaaccacttatagctctcctgtttataaggtcattggtcttgttaaaggaaacacacatactaattgtatcttaattacttcactcttaacctgccagcgtataagagtttttacttattgtctaattaacaggaggataacttgagtttaaatttattccaaaccataaacggttagctatcgtgtggtttaaaaacgacaatattagcggatgataactctcaacatgcaaatttgtaaacgtagattatctattttgttaatgaaaggtaaatatcatccaacagtccatgaagatctcacataagttattaaacttaataatggtatatgtaaaaatatagggggatagtattttggagagttttattatgacctatggatcagcatgaaatcatcgcggtgaggtaacaaagagttcattaaaactattatctcccgcgaggataagacaacggcttccatcacacgctgtgatatgcaaattgtgaactttctaaaacatggcttctaatataggcgttccagctaaaccacaaggtagagtcactgttcaaagtatgagacggagggagcattgattccctggacacctagctgtttaagatcaaaatttaacgcctaatactgcaatattactataagtaaaagattagaagtatggaacaattttatttcacgtttttttggtatacgtttgggtcatgtgttgattaagtaaaatgattgtgagtaattgaacggtgttatatagtaaccggttatataacctttaagtatttagttttagttgttcttttttTGTAAGCA-GTTA-----CA-GCAA--ATTA--AA-AATATTCA---TG-TTAATCA--TAATCA-TGC-T----T-CA-AATATA-T---AAA-C--AGTATTAAA-CTTAGT-AA---ATTTAATTAGCAAAGATCA-----------AATGTAAAACATGATAAAGAACAT-TAA-AC-CGCAG-CG--ACCGCGTTTT-C--AGC-----AAG--C-CTA--G-T-AAG-GTCCGTGTTGCG-CGCGCTT-CTAA--ATA-C-AGCGCT-ATCAAAAAAATCCTGGG-GA-
gi|11 : actttcgannnnnnnnnnnnnnnnnnnnnnnnnttttttgtatatattacacagagggcacatctTGTTCTCCC----CAGG-C--CCTTAA-AGC-GC--TG-TGCTT-TA---CAGCGCTATC-AAGT-----GAG-------------------------AGC-AC-TGTGCTATT--GCTATCAGCACTGT-C-C-TATAAA----GATC-A-AT--TAGAACCGAGC-A--T
gi|11 : ATCAAGTGA-GAGCACTGTG-CTA-TTGCTATCAGCACTGTC--C-TATA--AA--G--ATCAATTAGAACCGAGCATGTAAGCA-GTTA--TTACA-TCAA-TATTA--AA-A-----TA---TG-TTA-TCAA-TGA--A-TGC-T----T-CA-A---T--T---AAA-C--A-TAATGAA-CTTAGT-AA---A-TTG--TA-CAAAGATCA-GTG-TAAAC-AATATTAAAC---ATGAAAAACA---AA-CC-CGCAG-CA--AT-ACGTTT--C--A-T-----AA------TA--A-T-AAG-GTC-gtaagcagttattacatcaatattaaaatatgttatcaatgaatgcttcaattaaacataatgaacttagtaaattgtacaaagatcagtgtaaacaatattaaacatgaaaaacaaacccgcagcaatacgtttcataataataaggtcaaatcctggggagaacactgg
gi|11 : tgttctccccaggcccttaaagcgctgtgctttacagcgctAAATCCTGGG-GA-GA-ACACTGaaatcctggggagaacactgg
gi|12 : tgttctccccaggcccttaaagcgctgtgctttacagcgctatcaagtgagagcactgtgctattgctatcagcactgtcctataaagatcaattagaaccgagcatgtaagcagttattacatcaatattaaaatatgttatcaatgaatgcttcaattaaacataatgaacttagtaaattgtacaaagatcagtgtaaacaatattaaacatgaaaaacaaacccgcagcaatacgtttcataataataaggtc---AAA-C--A-TATTGAA-CTTAGT-CA---ATT-A--TA-CAAAGATCA-ATG-TAAACAAAT-TTAAACA---TGAAAAACAT-TAA-AC-CGCAG-TG--AC-GCGTTTCAC--AAC-----AAG--CTCTC--A-T-AAG-GTC-GTGC--CG-CGCGCTC-TAAA---TA-C-AACGCT-ATC-AAAAAATCCTGGG-GA-GA-ACACTGg
gi|13 : aCTCCC----CAGG-C--CCTTAA-AGC-GC--TG-TGCTT-TA---CAGCGCTATA-AAGT-----GAG-------------------------AGG-AC-TGTGCTATT--GCTATCAGCACTGT-C-C-TATAAA----GATC-A-AT--TAGAACCGAGC-A--T
gi|14 : ACAGTCACTGAAT-AAAGGT-AA--AATT-TCATAAAA----------------GTTG-A-ATAAGTT-T-AAACGTAATAAATGTTA-T-TGTAA-TGAATA-------AT-AAG----------------TT---ACAG----ATTAC-AT-CTATTG--CA-Cgtaagcagtta
gi|15 : tgtAA-ATT-ACCATGTAAG--AAGCCA------TGTCA-GTGTCAATTTCAAAG---------------T-TTTTTC-----AG--TC--CAT--AGC-ACAGTG----TACGTTGC--A-ttaa
gi|16 : ACAGTCGCTGAAT-AAAGGT-AA--AATT-CCACGAAA---TCA-ACTG--AAAATTT-A-ATAAGTT-atcatattcgaaaaatgtacag
gi|18 : tcatattcgaaaaatgtGTGTTCTCCCGGCCCAGA-C--CCTTAA-AGC-GC--TG-TGCTT-TA---CAGC
gi|2 : AGTGTTTCTCC----CAGAGCGACCTTTT-ACC-GC--TG-TATTT-TTT--CGGCGCTATC-GAGTTTTCAGCAC-T--C-TGCT-TCAAT--A--C--AGC-GC-TCTGC-ATA--GCTACCAGCGCT-T-C-C-T-TAAA----GATC-A-AT--TAGATTTGTGC-A--TTG-TGA-TGG-TT-A-AT--ATCTTA-AAG-GAAGCCA-------GCCT-G------------AG---------------A-TTTTTC-----ACGTAC--CAT--AGCTTCATTT----TATGTTGC--A-TCAGATTA--TTTCCAACTCTCCT--GAAATGCCAGG-AG--TAGATTTT--TCACACCT-GATCTCC---------AG---------------------------CACATC--TGGAA-ATCCGTC-GAA--ATTC-CACACT-TTAGT------TGGAAAAC-----ACTAGAAGC---TCTG--TTT-CGAGGATCCTTAG-CTTTGT-----TAAAT--AACAA-ACA-ACC-AATGTGTGTTCTTAATTAAC-TTCACTCA-AACCTGCAAG--C-T--ATA---G-TTGTT--CT-AT------TAA--------AGGATAA-TTGAGTTAAAA---ATGCGAAA-AACAAACTTAATTAAGCATGCGTGTGGTT--AAAACAAC-ATATTAGCATAGGGAGAATCACTTCTCACCAT-CAAATC---GAAAGTAGATTA---ATCTTGTTGAATCGAAAGAA----TGAAT-AAATGT-CATCCACA-TCATGAAA---TTA-A-TGCAAAAATTT-A-ATAAGTT-TTAAACTTAATAAATGTTA-T-CG-AA-CAAATA-------ATCGAGT------------G-CTT---AGAGTTTTATTATGAC-A-ATGA--CA-CATGAAATCATCGCGGT------ACTAAAATTTT-TT--AACTCACAATATCTCACAC----AT-AGACAAACGGCTTCCATCACA-ACTTGTGTGATCAATTGCAAATTGTGACTTTCCTATA--ATGGCTTC--------------------AGCCAC-AGGTAGATTTAC-GTTCCAGGTAT-AGACTGATG-----CTGATTCCTGGAACACCTCGCTGTTTTTAATCAAAG-TTAACGCCTAATACCTGCAAATATTAC-GTAGGTAAA--ATTATGAAGTATGGGTTTTGAACAA-TTTATTTACACCATTGTTTTGTATATTTTT--TTCATTTGTTGAT--AGT----AATATTGT-ATTAATTGGTA-----ACTGTTAAC-TATAGTAA--G--GT--TTTATAATTAA--AAGTAAGCA-GTTA-----CA-GCAA-TATTA--AATA-----TA---TG-T---TCAA-TCA--A-TGC-T----T-CA-A---TA-T---AAA-C--A-TATTAAA-CTTAGTAAA---ATTCA--TA-CAAAGATCA-GTG-TTAACCAATTTTAAGCA--ATGAAAAACAT-TAAGAC-CGCAG-CG--AC-GCGTTTC-C----C-----AAG--C-CTA--G-T-AAGCGTC-GTGT--CG-CGCGCTA-TAAA--ATA-C-AGCGCC-CTC-AAAAATCCCTGGG-GA-GA-ACACTG
gi|3 : AAGAGAAGCCA------TGTCA-T------------TGTC-------------A-TTTTTTTAATAAT--CCATCATTTAGC-A-ATGTG---TATGTTACTAA-TCAGACTAATTTTTTAGCTCTTCTATGAAA-ACCAGGTGGCGTAGATTTTATCAGCACTTTGATTTGC---------AA-----GAGTACGAGCC----------CGACACCGTCAAAA-ATCTGTC-AAATAATTTTCACACCCTT--T------T-GAAAAC-----AT----GAT---CTTGTTTTT-CATGGAT-CTTGATTTTTGTTTAAATAAAA--AGCAACACA-AATGAATGTGTAGTGTTAATTAACGTTCACTG--AACCTGCATGCTC-T--ATA---GCTTGTT--TTAATAAAGCTTAATTAA
gi|3 : GCTGAATTAAAGGTTAA--AATTGTCATTAAA---TTACA-TA--AAA--TT-A-ATAAGGT-TTAAACACGTTAAATGATT-T-TGTAAATAAATA-------AT-AAGTTATCAGCTAGTCATCTA---AGAGTTTTGTAATGGCTCTAT----CA-CATGAAATCATattgggatgcatcctctctagattctgttagggaagattaactttacaactcttagcctccgacaaacaaagtaaaaacgctttgtatatcgaaaaattaacacgagtcgcgcgagtatgctgaattaaaggttaaaattgtcattaaattacataaaattaataaggtttaaacacgttaaatgattttgtaaataaataataagttatcagctagtcatctaagagttttgtaatggctctatcacatgaaatcatgctgtataaaat
gi|4 : aagagaagccatgtcattgtcatttttttaataatccatcatttagcaatgtgtatgttactaatcagactaattttttagctcttctatgaaaaccaggtggcgtagattttatcagcactttgatttgcaagagtacgagcccgacaccgtcaaaaatctgtcaaataattttcacacccttttgaaaacatgatcttgtttttcatggatcttgatttttgtttaaataaaaagcaacacaaatgaatgtgtagtgttaattaacgttcactgaacctgcatgctctatagcttgttttaataaagcttaattaaattgggatgcatcctctctagattctgttagggaagattaactttacaactcttagcctccgacaaacaaagtaaaaacgctttgtatatcgaaaaattaacacgagtcgcgcgagtatAGTGTTCTCT-------AGGC--CATTTT-AGC-GC--TG-TATTT-TA---AGGCGCTAT--GAGTTT-CAGCAC-T--G-TGCTATCACT--ACTC--AGT-G--TCTGCTATA--AGTACCAGCAGTGT-C-C-TATAAG----GATC-A-ATAGTAGATCTGTGT-AC-TTG-TGA-TGG-TTAA-AT--ATCCTGTAA--GAAGCCATGCTGGTGTCA-A------------AG---------------A-TTTTCC------C--GC--CAT--AGC-ACATTT----TTTG-TGC--A-gctgtataaaat
gi|4 : gATGTAAGCAAGTTA------A-GCAA-TATTA--AA-A-----AAAATTG-TTA-TCAAGTGA--A-TGC-T----T-CA-A---TAAT---AAA-C--AATATTGAAACTTAGTTAA---ACTTA--TA-CAAAGATCA--TG-TAAACAAAT-TTCAACA---TGAAAAATAT-TAA-CT-TGCAGGCGGTAC-GCGTTCT-C--A-CGAGACAAG--A-CTGCTA-T-AGG-CTC-GTCC--TG-CGCGCTTCTAAATTATA-C-AGCGCT-AT--AAAAAATCCTGGG-GA-GA-ACACTGgttaatgcaatgtaagcaagttaagcaatattaaaaaaaattgttatcaagtgaatgcttcaataataaacaatattgaaacttagttaaacttatacaaagatcatgtaaacaaatttcaacatgaaaaatattaacttgcaggcggtacgcgttctcacgagacaagactgctataggctcgtcctgcgcgcttctaaattatacagcgctataaaaaatcctggggagaacactgga
gi|5 : gagtgttctctaggccattttagcgctgtattttaaggcgctatgagtttcagcactgtgctatcactactcagtgtctgctataagtaccagcagtgtcctataaggatcaatagtagatctgtgtacttgtgatggttaaatatcctgtaagaagccatgctggtgtcaaagattttcccgccatagcacattttttgtgcagttaatgcaAGTGTTCTCCC----CAAGGC--CCTTAATAGC-GC--TG-TATTT-TAACCCAGCGCTATT-GAGTTTTCAGCAC-T--GGTGCTATCACTT-A--CCCAGT-GC-TTTGCTATAA-GCTACCAGCACTGT-CGC-TATAAA----GATC-A--T--TAGA-TTGTGT-A--TTG-TGA-TGGGTTAA-ATTTATCTTGTAAG-AAAGTCA------TGTCA-A------------AG---------------ATTTTTTC-----AC--CC--CA---AGC-ACATTT----TATGTTGC--A-ga
gi|5 : ATGTAAGCA-GTTA--C--AA-GCAAATATTA--AA-A-----AA---TG-TTA-TCAA--GA--A-TGC-T----TTCA-A---TA-T---AAAGA--A-TATTGAA-GTTAGT-AA---A-TTA--TA-ACAAGATCA-ATG-TAAACAAATTTAAAAC---ATGAAAAACAT-TAA-AC-CGCAA-TG--AA-GCGTTTCACA-A-C-----AAGCTC-CTA--A-T-AAG-GTT-GTGC--CG-CGCGCGT-CAAA--ATA-CAAGCGCTAATA-AAAAAATCCTGGG-GAGGA-ACACTattatatcaaatgtaagcagttacaagcaaatattaaaaaatgttatcaagaatgctttcaatataaagaatattgaagttagtaaattataacaagatcaatgtaaacaaatttaaaacatgaaaaacattaaaccgcaatgaagcgtttcacaacaagctcctaataaggttgtgccgcgcgcgtcaaaatacaagcgctaataaaaaaatcctggggaggaacact
gi|6 : agtgttctccccaaggcccttaatagcgctgtattttaacccagcgctattgagttttcagcactggtgctatcacttacccagtgctttgctataagctaccagcactgtcgctataaagatcattagattgtgtattgtgatgggttaaatttatcttgtaagaaagtcatgtcaaagattttttcaccccaagcacattttatgttgcaattatatcaaAGTGTTCTCCC----CAGGCC--CTTTTT-AGC-GC--TG-TATTTCTA---CAGCGCTATT-GAGTTT-CAGCACCT--G-TGCTATCACTTAA--C--AGCTGC-TGGGCTATAA-GCTACCAGCACTGTTC-C-TATAAA----GATCCA-AT-----AA--GTGTTA--TTGCTGA-TGG-TTAA-AT--ATCTTGTAAG-AAAGTCA------TGTCA-A------------AG---------------A-TTTTGC-----AC--CC--CTT--AGC-A-A-TT----TATGTTGC--A-
gi|6 : GCACC--C--C-T-TAGCAA--TTTAT--GTTGCAATTAATCATG---AC--GTTA-----CA-TCAA-TATTA--AA-A-----C----TG-TTA-TCAA--GA--A-TGC-T------CACA---TA-T---AAA-C--A-TAT-GAA-GTTAGT-AA---AATTA--TA-CAAAGATCA-ATG-TAAACAAATTT--AAC---ATAGAAAACATATAA-AC-CGCAA-CG--AC-GCGTTTCACAAA-C-----AAG--CTCTA--A-T--AG-GTC-GT-T--CGCCGCCCTC-T-AA--ATA-C-AGTGCT-ATC-AAAGA--CCTGGGCGA-GA-ACACTGattaatcatgacgttacatcaatattaaaactgttatcaagaatgctcacatataaacatatgaagttagtaaaattatacaaagatcaatgtaaacaaatttaacatagaaaacatataaaccgcaacgacgcgtttcacaaacaagctctaataggtcgttcgccgccctctaaatacagtgctatcaaagacctgggcgagaacactg
gi|7 : agtgttctccccaggccctttttagcgctgtatttctacagcgctattgagtttcagcacctgtgctatcacttaacagctgctgggctataagctaccagcactgttcctataaagatccaataagtgttattgctgatggttaaatatcttgtaagaaagtcatgtcaaagattttTTGC--AATGGGACTA--TTTTTCACTCTCCT--GGG-CGCCGAGTGG--TAGATTTT----ACACCT-GATCTAC---------C---------------CC----------ACACATCT-CA-AA-ATTTGTT-GAA--ATTC--ACACC-TT--T--------GAAATC-----AC----GCT---CCCA--ATT-CACGGATCCTTGA-TTTTGT-----TAAAC----CAA-ACA-ACT-AA--TGTGTTGTTAATT-AC------------CCTGCATG--C-TGAATA---G-T
gi|7 : accacctgtccaatatactCGCTTGCCAATAT-CAAA-------AAGTAGA--A---ATCGCGTT---T-GATACAATCGCCGAAT-AAAGGT-AA--AATT-TCATGAA-----TACA-TG--AAAATTTGA-AT-AGTT-TT-AATTTAATAAAT-TTATT-TGTAA-TAAACA-------AT-GAGT------------A-------AGAGTTTTATTATTGC-CTgctgaaaaaacgaattattccccttgccgtttaaaacgcttgccaatatcaaaaagtagaaatcgcgtttgatacaatcgccgaataaaggtaaaatttcatgaatacatgaaaatttgaatagttttaatttaataaatttatttgtaataaacaatgagtaagagttttattattgccttaa
gi|8 : accacctgtccaatatactttgcaatgggactatttttcactctcctgggcgccgagtggtagattttacacctgatctaccccacacatctcaaaatttgttgaaattcacacctttgaaatcacgctcccaattcacggatccttgattttgttaaaccaaacaactaatgtgttgttaattaccctgcatgctgaatagtgctgaaaaaacgaattattccccttgccgtttaaaaGTTCTCCC----CAGGGC--CCTTAC-AGC-GCGTTGCTATAT------CAGCGCTATC-AAA-----AGTG--------------A----A--G--AGC-AC-TGTGCTAT---GCTATCAGCACTGT-C-CCTATAAA----GAC----AT--TAGAACCGAGC-A--Ttaa
gi|8 : AAGTGAAGAGCACTGTG-CTA--TGCTATCAGCACTGTC--CCTATA--AA--G--AC--ATTAGAACCGAGCATGTAAGCA-GTTA--TTACA-GCAA-TATTA--GACA-----TA---TGATTA-TCAA-TGA--A-TGCTT----T-CA-A---T--T----AA-C--A-TA-AGAA-CTTAGT-AA---A-TTG--TA-CCAAGATCA-GTG-TAAAC-AATATTAAAC---ATGAAAAAC----AA-AC-CACAG-CG--AT-ACGTTT--C--A-C-----AA------TA--A-TAAAG-GTC-GTGT--CA-TGCGCTT---AA--ATA-C-AGCGC--ATT-ACAGAATCCTGGG-GA-GA-ACACTgtaagcagttattacagcaatattagacatatgattatcaatgaatgctttcaattaacataagaacttagtaaattgtaccaagatcagtgtaaacaatattaaacatgaaaaacaaaccacagcgatacgtttcacaataataaaggtcgtgtcatgcgcttaaatacagcgcattacagaatcctggggagaacact
gi|9 : gttctccccagggcccttacagcgcgttgctatatcagcgctatcaaGTTCTCCC----CAGG-C--CCTTAA-AGC-GC--TG-TGTCTATA---CAGCGCTATC-A----------------G-TG----------A--G--AGC-AC-TGTGCTATT--GCTATCAGCACTGT-C-C-TATAAA----GATC-A-AT--TAGAACCGAGC-A--T
gi|9 : ATCA-GTGA-GAGCACTGTG-CTA-TTGCTATCAGCACTGTC--C-TATA--AA--G--ATCAATTAGAACCGAGCATGTAAGCA-GTTA--TA-CA-GCAA-TATTA--GA-A-----TA---TG-TTA-TCAA-TGA--A-TGC------T-CA-A---TA-----AAA-C----TAATGAT-CTTAGT-AA---A---G--TA-CAAAGATCA-GTG-TAAAACAATATTAAAC---ATGAAAAACA---AA-CC-CGCAG-GG--AT-ACGTTT--C--A-C-----AA------TA--A-T-AAG-GTC-GTGT--CA-TGCGATT-T-AA--ATA-C-AGCGCT-ATT-ACAAAATCCTGGG-GA-GA-ACACTGgtaagcagttatacagcaatattagaatatgttatcaatgaatgctcaataaaactaatgatcttagtaaagtacaaagatcagtgtaaaacaatattaaacatgaaaaacaaacccgcagggatacgtttcacaataataaggtcgtgtcatgcgatttaaatacagcgctattacaaaatcctggggagaacactg
blockSeqs : GGCC G GA AAT . GT C TAACC C TTTCAGCACTGGTGCTATCACTTACCC T . G AA T G C . C . AG AC A T C C . G A . TT AG TGCTGG GTGTCAATTTCAAAGT TAATAAT AT TT TTC G G TA A CTAAT C C AT AT T CG ATCA TT AAGAGTACGAGCCC GTCAA . . TA TC C AGTTG ACTAGAAGC T TT . A A C T TTAAA TAA C . G TG C AA GT CA A CTCT . C TTAATAAAGCT . . A . G G A TT G G . . ATAG G C C . TCG T . GAATC CAGTCA T T TC G A TTAATGCA G G . . TA G T T . AT ATAAGTTATCAGCTAGTCATCTA G T TG . . T T . . CAC A A . . A . TGT CA T C T . . . T . C . T T . G C TT . C A . . T GGTTTT . A CA G T T T T C G A ATTAA C T AA C GCAATTTATG T G GG A TTA . A . T ATATTCA A A GT TC . TTT C ATA AAT G AG T A A . T AT G G . A G A ATGA TAT G . G GT CC TCACGAGACAAGA CT . A C C TG C CTA TT . A A CA C G .
blockSeqs : . G . AA . . . TTT A TTCAGCACCTGTGCTATCACTTAAC . . G AA . . . . . . . AC A . . . . . A . T G . TTGTCA ACGT . . AC T . . . TTA C C . A T . TC T CCCA TGG . . . C . TT ATGAT T . . T A C . . AAG . . . TG G AA T G T CTGA . . CTAT G C . . . . T CAGTCG . . . . G TCAACTG A . . . TA T T . . T ATCGAGTGCTT G . GA . C G . CTA G T . . TTATAATC G G GC . TTA . . . C AAAAT . . T . . TTT . . AT . AA A . T . T . . A . C A T AA TT . . . . T CACAACAAGCTC . . . . . . . CT . . . . C . . .
blockSeqs : . G . AA . . . CTA C TTCAGCACTGTGCTATCACTACTC . . C T . . . . . . . TT T . . . . . A . . G . AAGAT AG . . AC T . . . CTA C C . C . . . T AG TCA . . . . . T ACGCT C . . C A . . . C . . . . G A . . T CT . . CAATCG . . . . G TTACATA A . . . A A A . . C ATAAGTT T . . . . G . CTA C T . . AAGATCAA T A TC . TA . . . . TA . . T . . TT . . AT . A T . . . T . . G . A T T A TT . . . . C CACAAACAAGCT . . . . . . . TA . . . . C . . .
blockSeqs : . C . AA . . . ATA T TTTCAGCACTCTGCTTCAATAC . . C T . . . . . . . TC T . . . . . A . . A . GAGA AC . . AC T . . . GAA . . . . T TACATG A . . . T T T . . T ATGAGTA . . . . CTA C . . . GTAAGGTT C A GC . C . . . . TA . . T . . TT . . AT . A T . . . C . . A . A T T A TT . . . . C CACAACAAGCT . . . . . . . TA . . . . A . . .
blockSeqs : . G . TT . . . TA T AGTGAAG . . T A . . . . . . . AC T . . . . . A . AAGA AC . . A T . . . . . . . G . . . . . . . AAGATCAA G G GC . . . . . . AA . . T . . TT . . AT . A T . . . A . . A . A T T A TT . . . . C TCAGCAAGC . . . . . . . CA . . . . C . . .
blockSeqs : . . . TT . . . TA C GTGAG . . G A . . . . . . . AC T . . . . AAGA C . . A . . . . . . AAGACA G G . . . . . . . TA . . T . . TT . . T . A T . . . . . . G . C A A A TT . . . . A CCCAAGC . . . . . . . T . . . . T . . .
blockSeqs : . . . TT . . . TA C GAG . . G T . . . . . . . T A . . . . . . . . . . TA . . . . . T . . T . A T . . . . . . G . . A T A . . . . . C CATAA . . . . . . . T . . . . T . . .
blockSeqs : . . . AC . . . TA . GAG . . G . . . . . . . . A A . . . . . . . . C . . . . . T . . A . A A . . . . . . . . . . T A . . . . . T CACAA . . . . . . . . . . . . . . . .
blockSeqs : . . . AA . . . . . . . . . . . . . . . . . . . A . . . . . T CACAA . . . . . . .
blockSeqCons : TA**** C* TTNAGCGCTGTGCTTCATC************** T** **** AC ** AAGA***************************** AC* **** CAGTCG TCAATG******* TA T* ATGAGTT*************************** CTA** ANGANNNN****** GC T**** ** TT****** AT**** A*** *** G* A*** TT* C* CACAACAAGC********** TA*
originalCons : AGTGTTCTCCC----CAGGGC--CCTTAN-AGC-GC--TG-TATTT-TA---CAGCGCTATC-GAGTTT-CAGCGC-T--G-TGCTATCACT--A--C--AGC-GC-TGTGCTATN--GCTACCAGCACTGT-C-C-TATAAA----GATC-A-AT--TAGAACCGNGC-A--TTG-TGA-TGG-TTAA-AT--ATCTTGTAAG-GAAGCCA------TGTCA-G------------AG---------------A-TTTTTC-----AC--CC--CAT--AGC-ACATTT----TATGTTGC--A-TCGGACTA--TTTTTAACTCTCCT--GAAACGCCAGGTGG--TAGATTTT--CAACACCT-GATCTAC---------AG-----G-------GCC----------ACACATCG-CGGAA-ATCCGTC-GAA--ATTC-CACACC-TT--T------T-GAAAAC-----AC----GGC---CCCG--TTT-CANGGATCCTTGG-TTTTGT-----TAAAN--AACAA-ACA-ACT-AATGTGTGTTGTTAATTAAC-TTCACTC--AACCTGCANG--C-T--ATA---G-TTGTT--TT-AT---GCCTAATTAACAGGAGGATAACTTGAGTTNAAATTTATNCNAAACNACAAACTTGGTTAGNCATGCGTGTGGTTTAAAAACGACAATATTAGCATAGGGANGATCGCTTNCCAACAT-CAAATC---GAAAGTAGATTA---ATCTCGTT-AAT-GAAACAGTCGCTGAAT-AAAGGT-AA--AATT-TCATGAAA---TTA-A-TG--AAAATTT-A-ATAAGTT-TTAAACTTAATAAATGTTA-T-TGTAA-TAAATA-------AT-GAGT------------A-CTT---AGAGTTTTATTATGAC-CTATGG--CA-CATGAAATCATCGCGGTGAGGTAACNAAGANTTCATTAAAACTCACANTATCTCNCGCGAGGATAAGACAAACGGCTTCCATCACACGCTTGTGTGATCAATTGCAAATTGTGANCTTCCTANAACATGGCTTCTAATATAGGCGTTCCAGCTAAGCCACAAGGTAGANTCACTGTTCNAGGTATGAGACNGANGGAGCACTGATTCCCGGGACACCTNGCTGTTTNNGATCAAAGTTTAACGCCTAATACCTGCAAATATTACTGTAGGTAAAAGATTATGAAGTATGGGTTTTGAACAATTTTATTTACACNNTTNTTTNGTATACGTTTGGNTCATNTGTTGATCAAGTGA-GAGCACTGTGACTAATTGCTATCAGCACTGTC--C-TATAGTAA--G--AT--NTTANAACCGAGCATGTAAGCA-GTTA--T--CA-GCAA-TATTA--AA-A-----TA---TG-TTA-TCAA-TGA--A-TGC-T----T-CA-A---TA-T---AAA-C--A-TATTGAA-CTTAGT-AA---ATTTA--TA-CAAAGATCA-GTG-TAAACAAATNTTAAACA--ATGAAAAACAT-TAA-AC-CGCAG-CG--AC-GCGTTTC-C--A-C-----AAG--C-CTA--A-T-AAG-GTC-GTGT--CG-CGCGCTT-TAAA--ATA-C-AGCGCT-ATC-AAAAAATCCTGGG-GA-GA-ACACTG
finalCons : AGTGTTCTCCC----CAGGGC--CCTTAN-AGC-GC--TG-TATTTTA----CAGCGCTATC-GAGTTTNAGCGCTGTGCTTCATC--------------AGC-GC-TGTGCTATT--GCTACCAGCACTGT-C-C-TATAAA----GATC-A-AT--TAGAACCGNGC-A--TTG-TGA-TGG-TTAA-AT--ATCTTGTAAG-GAAGCCA------TGTCAAAGA-----------------------------TTTTTC-----AC--CC--CAT--AGCAC-ATTT----TATGTTGC--A-TCGGACTA--TTTTTAACTCTCCT--GAAACGCCAGGTGG--TAGATTTT--CAACACCT-GATCTAC---------AG-----G-------GCC----------ACACATCG-CGGAA-ATCCGTC-GAA--ATTC-CACACC-TT--T------T-GAAAAC-----AC----GGC---CCCG--TTT-CANGGATCCTTGG-TTTTGT-----TAAAN--AACAA-ACA-ACT-AATGTGTGTTGTTAATTAAC-TTCACTC--AACCTGCANG--C-T--ATA---G-TTGTT--TT-AT---GCCTAATTAACAGGAGGATAACTTGAGTTNAAATTTATNCNAAACNACAAACTTGGTTAGNCATGCGTGTGGTTTAAAAACGACAATATTAGCATAGGGANGATCGCTTNCCAACAT-CAAATC---GAAAGTAGATTA---ATCTCGTT-AAT-GAAACAGTCGCTGAAT-AAAGGT-AA--AATT-TCATGAAATCAATG-------AAAATTT-A-ATAAGTT-TTAAACTTAATAAATGTTA-T-TGTAAT-AAATAATGAGTT---------------------------AGAGTTTTATTATGAC-CTATGG--CA-CATGAAATCATCGCGGTGAGGTAACNAAGANTTCATTAAAACTCACANTATCTCNCGCGAGGATAAGACAAACGGCTTCCATCACACGCTTGTGTGATCAATTGCAAATTGTGANCTTCCTANAACATGGCTTCTAATATAGGCGTTCCAGCTAAGCCACAAGGTAGANTCACTGTTCNAGGTATGAGACNGANGGAGCACTGATTCCCGGGACACCTNGCTGTTTNNGATCAAAGTTTAACGCCTAATACCTGCAAATATTACTGTAGGTAAAAGATTATGAAGTATGGGTTTTGAACAATTTTATTTACACNNTTNTTTNGTATACGTTTGGNTCATNTGTTGATCAAGTGA-GAGCACTGTGCTA--TTGCTATCAGCACTGTC--C-TATAANGANNNN------TTANAACCGAGCATGTAAGCA-GTTAT----CA-GCAA-TATTA--AA-A-----TA---TG-TTA-TCAA-TGA--A-TGCTT------CA-A---TAT----AAA-CA---TATTGAA-CTTAGT-AA---ATTTA--TA-CAAAGATCAG-TG-TAAACAAATNTTAAACA---TGAAAAACATT-AA-AC-CGCAG-CG--AC-GCGTTTCACAACAAGC----------CTA--A-T-AAG-GTC-GTGT--CG-CGCGCTTTA-AA--ATA-C-AGCGCT-ATC-AAAAAATCCTGGG-GA-GA-ACACTG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATTACATGTACATGAAATCATCGATCTCACGTTTATAACTCGCAAAAATATCT
Alignments
lowQualScore : 111111111111111111111111111111111111 11111111111111111111111111111111111111
lowQualScore : 1 111111 222222222222222222222222222222222222 222 11 11 55555555555555555555555555555555555555 111111111 111 1111 1 11111 11 11 11 2222 11 55555555555555555555555555555555555555 22222 1 1 11 22 1 44444444444 44444444444444444 11 1 1 22222 11111 1 1 1 11 11 222 1111111 111 1 5555555555555 11111111 1 222 11 11 1 11 1 2222 1 333333 222 22222 2222222222222 1 111 11 888888888888888888888888888888 2222 1 222222 1 11 222 2222 1 1 1 222 11 1 11 66666666666666666666 1 1 1 22222 1 1 1 1 11 1 222222 1 1 111 11 1111 1111 33333 1111111111 111111 1111 11111 111 111 22222222222 111 11
lowQualScore : 8888 7 55 666 4 55 4 555555 777 222222222222222222222222222222222222 4 4 1 555 8 4 9999 4 4 66 88 1 4 00 8 8 8 1 6 55 77 44444444444444444444444444444444444444 8888 999999999 77 77 111 1 7777 66 0 44444 2 2 33 33 3 33 3333 33 0 11111111111111111111111111111111111111 55555 0 0 33 55 0 66666666666 99999999999999999 2 33 0 1 3 2 0 55555 88888 0 0 0 22 8 66 33 666 1 8888888 777 0 1111111111111 44444444 5 1 111 1 1 66 88 1 5 88 5 4444 1 0 1 6 3 888888 7 333 0 44444 888888 6 6 99 6 1 6666666666666 1 3 6 6 0 0 1 0 1 000 0 11 8 8 888888888888888888888888888888 0 5 8 0 2222 0 999999 1 1 5 88 000 1 1 3333 5 5 5 111 88 5 1 1 88 88888888888888888888 5 1 5 1 5 1 1 66666 2 1 22 5 5 5 5 88 5 999999 5 5 22 1 1 2 888 1 6 0 3 8 99 6 00 2 5 6666 1 9999 1 1 4 4 77777 4 99 8888 55 8 7777777777 4 55 4 77 55 4 4 8888 4 4 777 111111 1111 0 3 7 22222 3 55 7 666 000 3 6 8 0 3 4 777 000 4 4 55 4 4 0 4 22222222222 8888 4 4 66 4 777 00 4 4 66 4 4 4
lowQualScore : .... . .. ... . .. . ...... ... .................................... . . . ... . . .... . . .. .. . . .. . . . . . .. .. ...................................... .... ......... .. .. ... . .... .. . ..... . . .. .. . .. .... .. . ...................................... ..... . . .. .. . ........... ................. . .. . . . . . ..... ..... . . . .. . .. .. ... . ....... ... . ............. ........ . . ... . . .. .. . . .. . .... . . . . . ...... . ... . ..... ...... . . .. . . ............. . . . . . . . . . ... . .. . . .............................. . . . . .... . ...... . . . .. ... . . .... . . . ... .. . . . .. .................... . . . . . . . ..... . . .. . . . . .. . ...... . . .. . . . ... . . . . . .. . .. . . .... . .... . . . . ..... . .. .... .. . .......... . .. . .. .. . . .... . . ... ...... .... . . . ..... . .. . ... ... . . . . . . ... ... . . .. . . . . ........... .... . . .. . ... .. . . .. . . .
lowQualScore : 5555 5 55 444 0 55 0 888888 222 222222222222222222222222222222222222 4 4 1 777 9 4 4444 4 4 11 66 0 4 66 0 0 0 7 7 88 44 77777777777777777777777777777777777777 3333 666666666 99 99 777 4 9999 99 0 22222 5 5 88 88 2 88 2222 22 8 55555555555555555555555555555555555555 22222 0 0 88 00 0 88888888888 00000000000000000 0 88 0 0 2 5 0 00000 88888 0 0 0 00 8 55 22 222 0 5555555 555 0 3333333333333 88888888 0 0 555 0 0 00 55 0 0 55 5 0000 0 7 0 7 3 000000 3 333 7 00000 888888 7 7 22 7 0 8888888888888 7 3 7 7 8 8 0 8 0 000 8 88 0 0 222222222222222222222222222222 8 0 0 8 8888 0 000000 0 0 5 55 555 0 0 0000 5 5 0 000 00 5 0 0 00 55555555555555555555 5 0 5 0 0 0 0 00000 5 0 00 5 0 5 5 00 5 555555 5 5 00 0 0 5 555 0 5 8 2 0 22 7 22 5 7 7777 0 3333 0 0 4 0 55555 0 55 5555 55 0 0000000000 0 55 0 44 55 0 0 5555 0 0 000 000000 4444 2 6 3 11111 5 00 3 444 777 6 5 1 2 6 0 000 222 0 0 55 0 0 8 0 77777777777 4444 0 0 11 4 111 66 4 4 33 0 0 4
consensus : AGTGTTCTCCC----CAGGGC--CCTTAN-AGC-GC--TG-TATTT-TA---CAGCGCTATC-GAGTTTN-AGCGC-T--G-TGCTA--TCA----C-----CAGC-GC-TGTGCTATN--GCTACCAGCACTGT-C-CTATAAA----GATC-A-AT--TAGAACCGNGC-A--TTG-TGA-TGG-TTAA-AT--ATCTTGTAAG-GAAGCCA------TG------------TC----------------AAAG--A-TTTTTC-----AC--CC--CAT--AGC-ACATTT----TATGTTGC--A-TCGGACTA--TTTTTAACTCTCCT--GAAACGCCAGGTGG--TAGATTTT--CAACACCT-GATCTAC---------AG-----G-------GCC----------ACACATCG-CGGAA-ATCCGTC-GAA--ATTC-CACACC-TT--T------T-GAAAAC-----AC----GGC---CCCG--TTT-CANGGATCCTTGG-TTTTGT-----TAAAN--AACAA-ACA-ACT-AATGTGTGTTGTTAATTAAC-TTCACTC--AACCTGCANG--C-T--ATA---G-TTGTT--TT-AT---GCCTAATTAACAGGAGGATAACTTGAGTTNAAATTTATNCNAAACNACAAACTTGGTTAGNCATGCGTGTGGTTTAAAAACGACAATATTAGCATAGGGANGATCGCTTNCCAACAT-CAAATC---GAAAGTAGATTA---ATCTCGTT-AAT-GAAACAGTCGCTGAAT-AAAGGT-AA--AATT-TCATGAAA---TCA-A-TG--AAAATTT-A-ATAAGTT-TTAAACTTAATAAATGTTAT-T-GTAA-TAAATA-AT-GAG---------TT--A----------------GAGTTTTATTATGAC-CTATGG--CA-CATGAAATCATCGCGGTGAGGTAACNAAGANTTCATTAAAACTCACANTATCTCNCGCGAGGATAAGACAAACGGCTTCCATCACACGCTTGTGTGATCAATTGCAAATTGTGANCTTCCTANAACATGGCTTCTAATATAGGCGTTCCAGCTAAGCCACAAGGTAGANTCACTGTTCNAGGTATGAGACNGANGGAGCACTGATTCCCGGGACACCTNGCTGTTTNNGATCAAAGTTTAACGCCTAATACCTGCAAATATTACTGTAGGTAAAAGATTATGAAGTATGGGTTTTGAACAATTTTATTTACACNNTTNTTTNGTATACGTTTGGNTCATNTGTTGATCAAGTGA-GAGCACTGT--GCT-ATT-GCTATCAGCACTGTC--C-TATAAAGACCGATTAGAACCGAGCA-TGTAAGCA-GTTA--T--CA-GCAA--TAT----TA--AA-A-----TA---TG-T--TA-TCAA-TGA--A-TGC-T----T-CA-A---TA-T---AAAC--A-TATTGAA-CTTAGT-AA---ATTTA--TA-CAAA---GATCA-G-TGT-AAACAAATNTTAAA-C-ATGA---AAAACAT-TAA-ACCGCAG-CG--A-CGCGTT-TCAC-AA--CAA-G--C-CTA--A-TAAG-GT-CGTGT--CG-CGCGCTT-TAAA--ATAC-AGCGCT-ATC-AAAAAATCCTGGG-GA-GA-ACACTG
Reference ( family-1486 ) : AGTGTTCTCCC----CAGGGC--CCTTAN-AGC-GC--TG-TATTT-TA---CAGCGCTATC-GAGTTTN-AGCGC-T--G-TGCT---TCA----T-----CAGC-GC-TGTGCTATT--GCTACCAGCACTGT-C-CTATAAA----GATC-A-AT--TAGAACCGNGC-A--TTG-TGA-TGG-TTAA-AT--ATCTTGTAAG-GAAGCCA------TG------------TC----------------AAAG--A-TTTTTC-----AC--CC--CAT--AGC-ACATTT----TATGTTGC--A-TCGGACTA--TTTTTAACTCTCCT--GAAACGCCAGGTGG--TAGATTTT--CAACACCT-GATCTAC---------AG-----G-------GCC----------ACACATCG-CGGAA-ATCCGTC-GAA--ATTC-CACACC-TT--T------T-GAAAAC-----AC----GGC---CCCG--TTT-CANGGATCCTTGG-TTTTGT-----TAAAN--AACAA-ACA-ACT-AATGTGTGTTGTTAATTAAC-TTCACTC--AACCTGCANG--C-T--ATA---G-TTGTT--TT-AT---GCCTAATTAACAGGAGGATAACTTGAGTTNAAATTTATNCNAAACNACAAACTTGGTTAGNCATGCGTGTGGTTTAAAAACGACAATATTAGCATAGGGANGATCGCTTNCCAACAT-CAAATC---GAAAGTAGATTA---ATCTCGTT-AAT-GAAACAGTCGCTGAAT-AAAGGT-AA--AATT-TCATGAAA---TCA-A-TG--AAAATTT-A-ATAAGTT-TTAAACTTAATAAATGTTAT-T-GTAA-TAAATA-AT-GAG---------TT--A----------------GAGTTTTATTATGAC-CTATGG--CA-CATGAAATCATCGCGGTGAGGTAACNAAGANTTCATTAAAACTCACANTATCTCNCGCGAGGATAAGACAAACGGCTTCCATCACACGCTTGTGTGATCAATTGCAAATTGTGANCTTCCTANAACATGGCTTCTAATATAGGCGTTCCAGCTAAGCCACAAGGTAGANTCACTGTTCNAGGTATGAGACNGANGGAGCACTGATTCCCGGGACACCTNGCTGTTTNNGATCAAAGTTTAACGCCTAATACCTGCAAATATTACTGTAGGTAAAAGATTATGAAGTATGGGTTTTGAACAATTTTATTTACACNNTTNTTTNGTATACGTTTGGNTCATNTGTTGATCAAGTGA-GAGCACTGT--GCT-ATT-GCTATCAGCACTGTC--C-TATAANGANNNNTTANAACCGAGCA-TGTAAGCA-GTTA--T--CA-GCAA--TAT----TA--AA-A-----TA---TG-T--TA-TCAA-TGA--A-TGC-T----T-CA-A---TA-T---AAAC--A-TATTGAA-CTTAGT-AA---ATTTA--TA-CAAA---GATCA-G-TGT-AAACAAATNTTAAA-C-ATGA---AAAACAT-TAA-ACCGCAG-CG--A-CGCGTT-TCAC-AA--CAA-G--C-CTA--A-TAAG-GT-CGTGT--CG-CGCGCTT-TAAA--ATAC-AGCGCT-ATC-AAAAAATCCTGGG-GA-GA-ACACTG
gi|1 : GTTCTGCC----CAGA-C--CTTTTT-AACTGC--TG-TATTT-T----CAGCGCTATCAGAGTTTT-AGCGC-TCTG-GGCTATACTA----C-----CAGC-ACGTCTGCTATGAAGCTACCTGCGCTGT-C-CTATGAGAGAGGATC-AGAA--TAGA-TTGTGT-AATTTG-TGAATGG-TTGAGAT--ATCTTATAAA-GAAGGCA------TG------------TCTTGAGTGTCAATGATCAATA--A-TTTCTC-----AA--CC--CAT--AGT--CATTTGAAATATGTTGT--AATCGGA--------TTAA-TCTC-T--GAAATGCCAGGTGG--TAGATTTT--CAACACC--GATCTACCCGCACCAGAGAAATAG-------GCCTATATAGGCAACACATAA-TGGAATACCCGTCCGAA--ATTC--ACACC-TT--TAGGCTTT-GAAAACCACTTAT----AGCTCTCCTG--TTTATAAGG-TCATTGG-TCTTGT-----TAAAGGAAACAC-ACATACT-AAT-TGTATC-TTAATTA-C-TTCACTCTTAACCTGCCAG--CGT--ATAAGAG-TTTTTACTT-ATT--GTCTAATTAACAGGAGGATAACTTGAGTTTAAATTTATTCCAAACCATAAAC--GGTTAGCTAT-CGTGTGGTTTAAAAACGACAATATTAGC----GGATGATAACTCTC-AACATGCAAATTTGTAAACGTAGATTATCTATTTTGTT-AAT-GAAA----------------GGT-AA--A-TA-TCATCCAACAGTCC-A-TG--AAGATCTCACATAAGTTATTAAACTTAATAA-TGGTATAT-GTAA--AAATATAG-GGGGATAGTATTTTGGA----------------GAGTTTTATTATGAC-CTATGGATCAGCATGAAATCATCGCGGTGAGGTAACAAAGAGTTCATTAAAACT---ATTATCTCCCGCGAGGATAAGACAA-CGGCTTCCATCACACGCT---GTGAT--AT-GCAAATTGTGAACTTTCTAAAACATGGCTTCTAATATAGGCGTTCCAGCTAAACCACAAGGTAGAGTCACTGTTCAAAGTATGAGACGGAGGGAGCATTGATTCCCTGGACACCTAGCTGTTTAAGATCAAAATTTAACGCCTAATA-CTGC-AATATTACTATAAGTAAAAGATTA-GAAGTATG------GAACAATTTTATTT-CACGTTTTTTTGGTATACGTTTGGGTCATGTGTTGATTAAGTAA-AATGATTGTGAGTA-ATT-G-----AACGGTGTT--A-TATAGTAACCGGTTATA
gi|1 : CGAGGG-TGTAAGCA-GTTACAT--TATGTTA--TAT----TATTAG-A-----TA---AG-A--GA-TTGA-TAA--AATG--TACAAT-CA-A---TA-TGAGAAACCTA-TATTAAA-CTTAGT-AAGATATTTA--TA-CAAA---GATCATG-TGTTGAACAAAATTTAAAAC-ATGA---AGAA------A-AC----------------TC-TCAC-GA--GAAAG--CTCTA--AGTAAG--T-CTAGT--CG-CGCGCTC-TAAAT-AT-C-AGTGCT-ATC-AAAAAATCCTGGG-GA-GATACACtaacctttaagtatttagttttagttgttcttttttctcttctatattataatcatatgcacgagggtgtaagcagttacattatgttatattattagataagagattgataaaatgtacaatcaatatgagaaacctatattaaacttagtaagatatttatacaaagatcatgtgttgaacaaaatttaaaacatgaagaaaactctcacgagaaagctctaagtaagtctagtcgcgcgctctaaatatcagtgctatcaaaaaatcctggggagatacac
gi|10 : gttctgcccagacctttttaactgctgtattttcagcgctatcagagttttagcgctctgggctatactaccagcacgtctgctatgaagctacctgcgctgtcctatgagagaggatcagaatagattgtgtaatttgtgaatggttgagatatcttataaagaaggcatgtcttgagtgtcaatgatcaataatttctcaacccatagtcatttgaaatatgttgtaatcggattaatctctgaaatgccaggtggtagattttcaacaccgatctacccgcaccagagaaataggcctatataggcaacacataatggaatacccgtccgaaattcacacctttaggctttgaaaaccacttatagctctcctgtttataaggtcattggtcttgttaaaggaaacacacatactaattgtatcttaattacttcactcttaacctgccagcgtataagagtttttacttattgtctaattaacaggaggataacttgagtttaaatttattccaaaccataaacggttagctatcgtgtggtttaaaaacgacaatattagcggatgataactctcaacatgcaaatttgtaaacgtagattatctattttgttaatgaaaggtaaatatcatccaacagtccatgaagatctcacataagttattaaacttaataatggtatatgtaaaaatatagggggatagtattttggagagttttattatgacctatggatcagcatgaaatcatcgcggtgaggtaacaaagagttcattaaaactattatctcccgcgaggataagacaacggcttccatcacacgctgtgatatgcaaattgtgaactttctaaaacatggcttctaatataggcgttccagctaaaccacaaggtagagtcactgttcaaagtatgagacggagggagcattgattccctggacacctagctgtttaagatcaaaatttaacgcctaatactgcaatattactataagtaaaagattagaagtatggaacaattttatttcacgtttttttggtatacgtttgggtcatgtgttgattaagtaaaatgattgtgagtaattgaacggtgttatatagtaaccggttatataacctttaagtatttagttttagttgttcttttttctcttctatattataatcatatgca-TGTAAGCA-GTTA-----CA-GCAA---AT----TA--AA-AATATTCA---TG-T--TAATCA--TAATCA-TGC-T----T-CA-AATATA-T---AAAC--AGTATTAAA-CTTAGT-AA---ATTTAATTAGCAAA---GATCA------------AATGTAAAA-C-ATGATAAAGAACAT-TAA-ACCGCAG-CG--ACCGCGTT-TT-C-AG--CAA-G--C-CTA--G-TAAG-GTCCGTGTTGCG-CGCGCTT-CTAA--ATAC-AGCGCT-ATCAAAAAAATCCTGGG-GA-
gi|11 : actttcgannnnnnnnnnnnnnnnnnnnnnnnnttttttgtatatattacacagagggcacatctTGTTCTCCC----CAGG-C--CCTTAA-AGC-GC--TG-TGCTT-TA---CAGCGCTATC-AAGT--G-AG------------------------------AGC-AC-TGTGCTATT--GCTATCAGCACTGT-C-CTATAAA----GATC-A-AT--TAGAACCGAGC-A--T
gi|11 : ATCAAGTGA-GAGCACTGT--GCT-ATT-GCTATCAGCACTGTC--C-TATAAAGATCAATTAGAACCGAGCA-TGTAAGCA-GTTA--TTACA-TCAA--TAT----TA--AA-A-----TA---TG-T--TA-TCAA-TGA--A-TGC-T----T-CA-A---T--T---AAAC--A-TAATGAA-CTTAGT-AA---A-TTG--TA-CAAA---GATCA-G-TGT-AAAC-AATATTAAA-C-ATGA---AAAACA---AA-CCCGCAG-CA--A-TACGTT-TCAT-AA------------TA--A-TAAG-GT-Cgtaagcagttattacatcaatattaaaatatgttatcaatgaatgcttcaattaaacataatgaacttagtaaattgtacaaagatcagtgtaaacaatattaaacatgaaaaacaaacccgcagcaatacgtttcataataataaggtcaaatcctggggagaacactgg
gi|11 : tgttctccccaggcccttaaagcgctgtgctttacagcgctAAATCCTGGG-GA-GA-ACACTGaaatcctggggagaacactgg
gi|12 : tgttctccccaggcccttaaagcgctgtgctttacagcgctatcaagtgagagcactgtgctattgctatcagcactgtcctataaagatcaattagaaccgagcatgtaagcagttattacatcaatattaaaatatgttatcaatgaatgcttcaattaaacataatgaacttagtaaattgtacaaagatcagtgtaaacaatattaaacatgaaaaacaaacccgcagcaatacgtttcataataataaggtc---AAAC--A-TATTGAA-CTTAGT-CA---ATT-A--TA-CAAA---GATCA-A-TGT-AAACAAAT-TTAAA-C-ATGA---AAAACAT-TAA-ACCGCAG-TG--A-CGCGTT-TCAC-AA--CAA-G--CTCTC--A-TAAG-GT-CGTGC--CG-CGCGCTC-T-AA--ATAC-AACGCT-ATC-AAAAAATCCTGGG-GA-GA-ACACTGg
gi|13 : aCTCCC----CAGG-C--CCTTAA-AGC-GC--TG-TGCTT-TA---CAGCGCTATA-AAGT--G-AG------------------------------AGG-AC-TGTGCTATT--GCTATCAGCACTGT-C-CTATAAA----GATC-A-AT--TAGAACCGAGC-A--T
gi|14 : ACAGTCACTGAAT-AAAGGT-AA--AATT-TCATAAAA----------------GTTG-A-ATAAGTT-T-AAACGTAATAAATGTTAT-T-GTAA-TGAATA-AT-AAG---------TT--A----------------CAG----ATTAC-AT-CTATTG--CA-Cgtaagcagtta
gi|15 : tgtAA-ATT-ACCATGTAAG--AAGCCA------TGTCAGTGTCAATTTC----------------AAAG--T-TTTTTC-----AG--TC--CAT--AGC-ACAGTG----TACGTTGC--A-ttaa
gi|16 : ACAGTCGCTGAAT-AAAGGT-AA--AATT-CCACGAAA---TCA-ACTG--AAAATTT-A-ATAAGTT-atcatattcgaaaaatgtacag
gi|18 : tcatattcgaaaaatgtGTGTTCTCCCGGCCCAGA-C--CCTTAA-AGC-GC--TG-TGCTT-TA---CAGC
gi|2 : AGTGTTTCTCC----CAGAGCGACCTTTT-ACC-GC--TG-TATTT-TTT--CGGCGCTATC-GAGTTTTCAGCAC-T--C-TGCT---TCAA---TA----CAGC-GC-TCTGC-ATA--GCTACCAGCGCT-T-C-CT-TAAA----GATC-A-AT--TAGATTTGTGC-A--TTG-TGA-TGG-TT-A-AT--ATCTTA-AAG-GAAGCCA-------G------------CC----------------TGAG--A-TTTTTC-----ACGTAC--CAT--AGCTTCATTT----TATGTTGC--A-TCAGATTA--TTTCCAACTCTCCT--GAAATGCCAGG-AG--TAGATTTT--TCACACCT-GATCTCC---------AG---------------------------CACATC--TGGAA-ATCCGTC-GAA--ATTC-CACACT-TTAGT------TGGAAAAC-----ACTAGAAGC---TCTG--TTT-CGAGGATCCTTAG-CTTTGT-----TAAAT--AACAA-ACA-ACC-AATGTGTGTTCTTAATTAAC-TTCACTCA-AACCTGCAAG--C-T--ATA---G-TTGTT--CT-AT------TAA--------AGGATAA-TTGAGTTAAAA---ATGCGAAA-AACAAACTTAATTAAGCATGCGTGTGGTT--AAAACAAC-ATATTAGCATAGGGAGAATCACTTCTCACCAT-CAAATC---GAAAGTAGATTA---ATCTTGTTGAATCGAAAGAA----TGAAT-AAATGT-CATCCACA-TCATGAAA---TTA-A-TGCAAAAATTT-A-ATAAGTT-TTAAACTTAATAAATGTTAT-C-G-AA-CAAATA-ATCGAGTGC------TT--A----------------GAGTTTTATTATGAC-A-ATGA--CA-CATGAAATCATCGCGGT------ACTAAAATTTT-TT--AACTCACAATATCTCACAC----AT-AGACAAACGGCTTCCATCACA-ACTTGTGTGATCAATTGCAAATTGTGACTTTCCTATA--ATGGCTTC--------------------AGCCAC-AGGTAGATTTAC-GTTCCAGGTAT-AGACTGATG-----CTGATTCCTGGAACACCTCGCTGTTTTTAATCAAAG-TTAACGCCTAATACCTGCAAATATTAC-GTAGGTAAA--ATTATGAAGTATGGGTTTTGAACAA-TTTATTTACACCATTGTTTTGTATATTTTT--TTCATTTGTTGAT--AGT----AATATTGT--ATTAATT-GGTA-----ACTGTTAAC-TATAGTAAGGTTTTATAATTAA--A-AGTAAGCA-GTTA-----CA-GCAA--TAT----TA--AATA-----TA---TG-T-----TCAA-TCA--A-TGC-T----T-CA-A---TA-T---AAAC--A-TATTAAA-CTTAGTAAA---ATTCA--TA-CAAA---GATCA-G-TGT-TAACCAATTTTAAG-CAATGA---AAAACAT-TAAGACCGCAG-CG--A-CGCGTT-TC-C-----CAA-G--C-CTA--G-TAAGCGT-CGTGT--CG-CGCGCTA-TAAA--ATAC-AGCGCC-CTC-AAAAATCCCTGGG-GA-GA-ACACTG
gi|3 : AAGAGAAGCCA------TG------------TC----------------ATTGTCA-TTTTTTTAATAAT--CCATCATTTAGC-A-ATGTG---TATGTTACTAA-TCAGACTAATTTTTTAGCTCTTCTATGAAA-ACCAGGTGGCGTAGATTTTATCAGCACTTTGATTTGC---------AA-----GAGTACGAGCC----------CGACACCGTCAAAA-ATCTGTC-AAATAATTTTCACACCCTT--T------T-GAAAAC-----AT----GAT---CTTGTTTTT-CATGGAT-CTTGATTTTTGTTTAAATAAAA--AGCAACACA-AATGAATGTGTAGTGTTAATTAACGTTCACTG--AACCTGCATGCTC-T--ATA---GCTTGTT--TTAATAAAGCTTAATTAA
gi|3 : GCTGAATTAAAGGTTAA--AATTGTCATTAAA---TTACA-TA--AAA--TT-A-ATAAGGT-TTAAACACGTTAAATGATTT-T-GTAAATAAATA-AT-AAG---------TT--ATCAGCTAGTCATCTAAGAGTTTTGTAATGGCTCTAT----CA-CATGAAATCATattgggatgcatcctctctagattctgttagggaagattaactttacaactcttagcctccgacaaacaaagtaaaaacgctttgtatatcgaaaaattaacacgagtcgcgcgagtatgctgaattaaaggttaaaattgtcattaaattacataaaattaataaggtttaaacacgttaaatgattttgtaaataaataataagttatcagctagtcatctaagagttttgtaatggctctatcacatgaaatcatgctgtataaaat
gi|4 : aagagaagccatgtcattgtcatttttttaataatccatcatttagcaatgtgtatgttactaatcagactaattttttagctcttctatgaaaaccaggtggcgtagattttatcagcactttgatttgcaagagtacgagcccgacaccgtcaaaaatctgtcaaataattttcacacccttttgaaaacatgatcttgtttttcatggatcttgatttttgtttaaataaaaagcaacacaaatgaatgtgtagtgttaattaacgttcactgaacctgcatgctctatagcttgttttaataaagcttaattaaattgggatgcatcctctctagattctgttagggaagattaactttacaactcttagcctccgacaaacaaagtaaaaacgctttgtatatcgaaaaattaacacgagtcgcgcgagtatAGTGTTCTCT-------AGGC--CATTTT-AGC-GC--TG-TATTT-TA---AGGCGCTAT--GAGTTTC-AGCAC-T--G-TGCTA--TCACTACT-----CAGT-G--TCTGCTATA--AGTACCAGCAGTGT-C-CTATAAG----GATC-A-ATAGTAGATCTGTGT-AC-TTG-TGA-TGG-TTAA-AT--ATCCTGTAA--GAAGCCATGCTGGTG------------TC----------------AAAG--A-TTTTCC------C--GC--CAT--AGC-ACATTT----TTTG-TGC--A-gctgtataaaat
gi|4 : gA-TGTAAGCAAGTTA------A-GCAA--TAT----TA--AA-A-----AAAATTG-T--TA-TCAAGTGA--A-TGC-T----T-CA-A---TAAT---AAAC--AATATTGAAACTTAGTTAA---ACTTA--TA-CAAA---GATCA---TGT-AAACAAAT-TTCAA-C-ATGA---AAAATAT-TAA-CTTGCAGGCGGTA-CGCGTTCTCAC-GAGACAA-G--A-CTGCTA-TAGG-CT-CGTCC--TG-CGCGCTTCTAAATTATAC-AGCGCT-AT--AAAAAATCCTGGG-GA-GA-ACACTGgttaatgcaatgtaagcaagttaagcaatattaaaaaaaattgttatcaagtgaatgcttcaataataaacaatattgaaacttagttaaacttatacaaagatcatgtaaacaaatttcaacatgaaaaatattaacttgcaggcggtacgcgttctcacgagacaagactgctataggctcgtcctgcgcgcttctaaattatacagcgctataaaaaatcctggggagaacactgga
gi|5 : gagtgttctctaggccattttagcgctgtattttaaggcgctatgagtttcagcactgtgctatcactactcagtgtctgctataagtaccagcagtgtcctataaggatcaatagtagatctgtgtacttgtgatggttaaatatcctgtaagaagccatgctggtgtcaaagattttcccgccatagcacattttttgtgcagttaatgcaAGTGTTCTCCC----CAAGGC--CCTTAATAGC-GC--TG-TATTT-TAACCCAGCGCTATT-GAGTTTTCAGCAC-T--GGTGCTA--TCA----CTTACCCAGT-GC-TTTGCTATAA-GCTACCAGCACTGT-CGCTATAAA----GATC-A--T--TAGA-TTGTGT-A--TTG-TGA-TGGGTTAA-ATTTATCTTGTAAG-AAAGTCA------TG------------TC----------------AAAG--ATTTTTTC-----AC--CC--CA---AGC-ACATTT----TATGTTGC--A-ga
gi|5 : AGTGCTTT--GCT-ATAAGCTACCAGCACTGTCG-C-TATAAAGA-TCATTAG-ATTGTGTATTGTGATGG-GTTA----------AATTTATCTTGTA--AG-A------A---AG-TCATG-TCAA-AGA--T-TTT-T----T-CA-C---CC-C---AAGC--A-CATTTTA-TGTTGC-AA-----TTA--TATCAAATGTAAGCA-GTTAC-AAGCAAATATTAAA-attatatcaaatgtaagcagttacaagcaaatattaaaaaatgttatcaagaatgctttcaatataaagaatattgaagttagtaaattataacaagatcaatgtaaacaaatttaaaacatgaaaaacattaaaccgcaatgaagcgtttcacaacaagctcctaataaggttgtgccgcgcgcgtcaaaatacaagcgctaataaaaaaatcctggggaggaacact
gi|5 : agtgttctccccaaggcccttaatagcgctgtattttaacccagcgctattgagttttcagcactggtgctatcacttacccA-TGTAAGCA-GTTA--C--AA-GCAAA-TAT----TA--AA-A-----AA---TG-T--TA-TCAA--GA--A-TGC-T----TTCA-A---TA-T---AAAG--AATATTGAA-GTTAGT-AA---ATT-A--TA-ACAA---GATCA-A-TGT-AAACAAATTTAAAA-C-ATGA---AAAACAT-TAA-ACCGCAA-TG--A-AGCGTT-TCAC-AA--CAA-GCTC-CTA--A-TAAG-GT-TGTGC--CG-CGCGCGT-CAAA--ATACAAGCGCTAATA-AAAAAATCCTGGG-GAGGA-ACACTaaatgttatcaagaatgctttcaatataaagaatattgaagttagtaaattataacaagatcaatgtaaacaaatttaaaacatgaaaaacattaaaccgcaatgaagcgtttcacaacaagctcctaataaggttgtgccgcgcgcgtcaaaatacaagcgctaataaaaaaatcctggggaggaacact
gi|6 : agtgttctccccaaggcccttaatagcgctgtattttaacccagcgctattgagttttcagcactggtgctatcacttacccagtgctttgctataagctaccagcactgtcgctataaagatcattagattgtgtattgtgatgggttaaatttatcttgtaagaaagtcatgtcaaagattttttcaccccaagcacattttatgttgcaattatatcaaAGTGTTCTCCC----CAGGCC--CTTTTT-AGC-GC--TG-TATTTCTA---CAGCGCTATT-GAGTTTC-AGCACCT--G-TGCTA--TCA----CTTAA-CAGCTGC-TGGGCTATAA-GCTACCAGCACTGTTC-CTATAAA----GATCCA-AT-----AA--GTGTTA--TTGCTGA-TGG-TTAA-AT--ATCTTGTAAG-AAAGTCA------TG------------TC----------------AAAG--A-TTTTGC-----AC--CC--CTT--AGC-A-A-TT----TATGTTGC--A-
gi|6 : -GTTA-----CA-TCAA--TAT----TA--AA-A-----C----TG-T--TA-TCAA--GA--A-TGC-T------CACA---TA-T---AAAC--A-TAT-GAA-GTTAGT-AA---AATTA--TA-CAAA---GATCA-A-TGT-AAACAAATTT--AA-C-ATAG---AAAACATATAA-ACCGCAA-CG--A-CGCGTT-TCACAAA--CAA-G--CTCTA--A-T-AG-GT-CGT-T--CGCCGCCCTC-T-AA--ATAC-AGTGCT-ATC-AAAGA--CCTGGGCGA-GA-ACACTGattaatcatgacgttacatcaatattaaaactgttatcaagaatgctcacatataaacatatgaagttagtaaaattatacaaagatcaatgtaaacaaatttaacatagaaaacatataaaccgcaacgacgcgtttcacaaacaagctctaataggtcgttcgccgccctctaaatacagtgctatcaaagacctgggcgagaacactg
gi|7 : agtgttctccccaggccctttttagcgctgtatttctacagcgctattgagtttcagcacctgtgctatcacttaacagctgctgggctataagctaccagcactgttcctataaagatccaataagtgttattgctgatggttaaatatcttgtaagaaagtcatgtcaaagattttgcaccccttagcaatttatgttgcaattaatcatgacTTGC--AATGGGACTA--TTTTTCACTCTCCT--GGG-CGCCGAGTGG--TAGATTTT----ACACCT-GATCTAC---------C---------------CC----------ACACATCT-CA-AA-ATTTGTT-GAA--ATTC--ACACC-TT--T--------GAAATC-----AC----GCT---CCCA--ATT-CACGGATCCTTGA-TTTTGT-----TAAAC----CAA-ACA-ACT-AA--TGTGTTGTTAATT-AC------------CCTGCATG--C-TGAATA---G-T
gi|7 : accacctgtccaatatactCGCTTGCCAATAT-CAAA-------AAGTAGA--A---ATCGCGTT---T-GATACAATCGCCGAAT-AAAGGT-AA--AATT-TCATGAA----TAC-A-TG--AAAATTTGA-ATA-GTT-TTAA-TTTAATAAAT-TTAT-TTGTAA-TAAACA-AT-GAG---------TA--A----------------GAGTTTTATTATTGC-CTgctgaaaaaacgaattattccccttgccgtttaaaacgcttgccaatatcaaaaagtagaaatcgcgtttgatacaatcgccgaataaaggtaaaatttcatgaatacatgaaaatttgaatagttttaatttaataaatttatttgtaataaacaatgagtaagagttttattattgccttaa
gi|8 : accacctgtccaatatactttgcaatgggactatttttcactctcctgggcgccgagtggtagattttacacctgatctaccccacacatctcaaaatttgttgaaattcacacctttgaaatcacgctcccaattcacggatccttgattttgttaaaccaaacaactaatgtgttgttaattaccctgcatgctgaatagtgctgaaaaaacgaattattccccttgccgtttaaaaGTTCTCCC----CAGGGC--CCTTAC-AGC-GCGTTGCTATAT------CAGCGCTATC-AA----A-AGTGA-A--G----------------------AGC-AC-TGTGCTAT---GCTATCAGCACTGTCC-CTATAAA----GAC----AT--TAGAACCGAGC-A--Ttaa
gi|8 : AAGTGAAGAGCACTGT--GCT-AT--GCTATCAGCACTGTC--CCTATAAAGACA--TTAGAACCGAGCA-TGTAAGCA-GTTA--TTACA-GCAA--TAT----TA--GACA-----TA---TGAT--TA-TCAA-TGA--A-TGCTT----T-CA-A---T--T----AAC--A-TA-AGAA-CTTAGT-AA---A-TTG--TA-CCAA---GATCA-G-TGT-AAAC-AATATTAAA-C-ATGA---AAAAC----AA-ACCACAG-CG--A-TACGTT-TCAC-AA--TAA-------TA-----AAG-GT-CGTGT--CA-TGCGCTT---AA--ATAC-AGCGC--ATT-ACAGAATCCTGGG-GA-GA-ACACTgtaagcagttattacagcaatattagacatatgattatcaatgaatgctttcaattaacataagaacttagtaaattgtaccaagatcagtgtaaacaatattaaacatgaaaaacaaaccacagcgatacgtttcacaataataaaggtcgtgtcatgcgcttaaatacagcgcattacagaatcctggggagaacact
gi|9 : gttctccccagggcccttacagcgcgttgctatatcagcgctatcaaGTTCTCCC----CAGG-C--CCTTAA-AGC-GC--TG-TGTCTATA---CAGCGCTATC--AGT--G-AG------------------------------AGC-AC-TGTGCTATT--GCTATCAGCACTGT-C-CTATAAA----GATC-A-AT--TAGAACCGAGC-A--T
gi|9 : ATCA-GTGA-GAGCACTGT--GCT-ATT-GCTATCAGCACTGTC--C-TATAAAGATCAATTAGAACCGAGCA-TGTAAGCA-GTTA--TA-CA-GCAA--TAT----TA--GA-A-----TA---TG-T--TA-TCAA-TGA--A-TGC------T-CA-A---TA-----AAAC----TAATGAT-CTTAGT-AA---A---G--TA-CAAA---GATCA-G-TGT-AAAACAATATTAAA-C-ATGA---AAAACA---AA-CCCGCAG-GG--A-TACGTT-TCAC-AA------------TA--A-TAAG-GT-CGTGT--CA-TGCGATT-T-AA--ATAC-AGCGCT-ATT-ACAAAATCCTGGG-GA-GA-ACACTGgtaagcagttatacagcaatattagaatatgttatcaatgaatgctcaataaaactaatgatcttagtaaagtacaaagatcagtgtaaaacaatattaaacatgaaaaacaaacccgcagggatacgtttcacaataataaggtcgtgtcatgcgatttaaatacagcgctattacaaaatcctggggagaacactg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATTACATGTACATGAAATCATCGATCTCACGTTTATAACTCGCAAAAATATCT