lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 11 88888888888888888888888888888888888888888888888888888888888888888888888888888 11111 111 11111 1 222222 2222222 1 7777777777777777777777777777777777 111111 444444444444444 222 55555555555555 1 1 1111 11 4444444444444444 22222 11 22222 1111 22 1 4444444 11 11 88888888 111 222 11111 222222222222 111 11111111 11111 444444444444444444444444444444 111111 33333333333333 2222
lowQualScore : 22 00000000000000000000000000000000000000000000000000000000000000000000000000000 3 99999 66 888 5 5 44444 5 1 66 8 8 1 7 111111 5 5 5555555 2 1 6666666666666666666666666666666666 3 6 999999 6 99 3 0 66 555555555555555 999 66666666666666 0 33 5 0 1111 11 5555555555555555 11111 11 00000 8 7777 66 0 5 6 0000000 99 11 8 11 00000000 444 888 3 6 99 77777 66 5 33 888888888888 777 4 777 4 5 5 22222222 55555 666666666666666666666666666666 888 555555 4 00000000000000 888 6 0 6 0 0 3333 99 2
lowQualScore : .. ............................................................................. . ..... .. ... . . ..... . . .. . . . . ...... . . ....... . . .................................. . . ...... . .. . . .. ............... ... .............. . .. . . .... .. ................ ..... .. ..... . .... .. . . . ....... .. .. . .. ........ ... ... . . .. ..... .. . .. ............ ... . ... . . . ........ ..... .............................. ... ...... . .............. ... . . . . . .... .. .
lowQualScore : 00 55555555555555555555555555555555555555555555555555555555555555555555555555555 2 44444 33 000 7 7 33333 0 7 11 9 1 7 9 444444 7 7 4444444 0 0 2222222222222222222222222222222222 5 7 222222 7 22 7 7 88 444444444444444 666 44444444444444 0 55 2 6 0000 00 0000000000000000 44444 00 00000 0 0000 22 8 0 7 8888888 22 44 0 00 88888888 000 555 2 7 22 66666 11 0 22 444444444444 555 4 222 4 0 0 44444444 22222 555555555555555555555555555555 888 222222 4 11111111111111 888 0 9 4 4 2 4444 22 8
consensus : ATTCATTCAAAGACGCACNTTTAAAATAGAGCTGTTTT-GGCACACTAAGCNCTTAT-TCAC---TANAAT-T--TCNA--TAA---TTAAGAACGGAT-G---AAC-AGATGATTGAGGTG-AA-G-----GTCGTTTACTAAAATTTC-GGAACGGCATTGAGA----TGTTTTG-ACAAAACG-AAATT--AATNCTGCCNGTACTATAC------AT------------ATGCA--------TGTCCGCATAAT-ACGTA------ATTTCATG-GG--TGTAAGAAA-GGTGTAAATTA------TNATC---GAAAAAAGAACTTTAGGTTTGTGTTT---AAATTAAAGT-GTCATACTGGTTTATTCCTTTTCAAAACGAAC--TGATGA--------TGCA----ATA-TT--TTCGTTTTCTGAAAA--AC-----G-ATCTGC----AAAATAATTATGACGTGAAATAAAAACAAATTCTGGT-------TA--AATGTTTAAACGA-TG--ATGTATTTG----TGATTA---ATGAACACTGAT-GN-ATACGGATTAAAG-TGGA-TTTATT---GTT--C---GCCGTTGAC-TGCTTTACCNCCTGAAAA-TA-T-G---T---AAGTGCCTGAAAATC--------A-C---T--TGT-T-TA--CTAT---TATTTTCGCTNAAA-AT-N-CGTT----CCGAC-C-GAAATTCAGTCGGAACTAGCTCGTTAN--AAAATGG--GGTTCGGAT
Reference ( gi|4 ) : ATTCATTTGAAGA-GCATATTTCA--TAAAACTACCGGAGGGACA--GAGTG-TTAT-TTAC---CAGAATGT--TCCACTTAA---CGGAGAATGAAT-G---AAC-AGATGATTCAGGTG-AA-G-----GTAGTTTACTAAAATTTC-GGAATGGAATTCAGG----TGTTTTG-ACAAAACG-AAATT--AATTTTGCCCGTACTATAC------AG------------GTACA--------TGTCCGCATAAT-ACGTA------ATTTCATG-GG--TGTAGGAAA-AGTGTAAATTA------TAATT---AAAAAAAGAACTCCAGGTTTGTGTTT---AATTTAAAGT-GTCATATTGGTTTATTCCTTTTCAAAACGAAC--TGATGA--------TGAA----ATA-TA--TTCGTTTTCTGAAAA--AC-----G-ATCTGC----AAAATTTTTATGATGTGAAATAAAAACAAATTCAGGT-------TA--AATGTTTAAACGA-TG--ATGTATTTGTCTGTGATTA---ATTTACACTGAT-GC-ATATGTATTAAAG-TGGA-TTTATT---GCT--T---GCCATTGAC-TGCTTTAACACCTGAAAA-TG-T-G---T---AAGTGCTTGAAAATC--------A-C---T--TGT-T-TA--ATAT---CATTTTCACTCAAA-AT-T-CGTT----CCGAC-C-AAAATTCAATCGGAACTAGCTCGTTAA--AAAATGG--GGTTCGGGT
gi|3 : ATTCATTCAAAGATGCACCTTTAAAATAGAGCTGTTTT-GGCACACTAAGCA-TTAA-T--C---CATAAT-T--TCAAA--AA---CG---AATTGCT-A---AAC-GGATGATTGAGGTA-AA-G-----GTCGATTATCAAAGGTTT-GGAACGACATTGAGA----TGTTTTG-ACAAAGCG-AAATT--CATACTGCTAGTACTATAC------AT------------ATGCA--------TGTCCGCATAGT-ACGTT------ATTGCATA-TG--TATAAGNNN-NNNATACAT
gi|6 : tcacaaatcaaataatcgttATTCATTCAAAGACGTACATTT------AAA-----------ACA--AAGTTCTTATGTCACACTTAGGAT-TAATCCA--TAA---TTAAAAATAAAC-G---AATTAGAAAA--CAGGTG-AA-GTTTTGGTCGTTTA-TGAAACTTCTGGAACGGCAATGAGA----TTTTATG-ACAAAACG-AAATT--------GCATGTA---TA----------------------TGCA--------TGACCGCATAAT-AAGTA------AGTTCATGAGG--T-TGAGAAA-GGTATAAATTA------TCA---------GAAGAACTTTGGGTTTATATGT---AAAT-AAAGTTGTCATACTGGTTTATTCCTTG-CAAAACGAAC--TGAAGA--------TACA----ATA-GT--TTCGTTTTCTGAAAA--ACTACATGTATCTGC----AAAATAATTATGACATGAAATAAAAACAAATTTTGGT-------CA--ACTGTTatgcatgtccgcatagtacgttatttcatatgtataagaaagctataatttattcaaaacaaaattggtttattcctttcaaaacgaaatgatgatgtaatattttcgtttactgaaaaacgatccgcaaaataattatgacgtgaaataaaaacaaagtctggttaaatgtttagacgatgatgtatgtgattgatgagaactgatgcaatatggattaaaatggatttattgtttgtcattgactgctttatcatatgaaaatatgtaagtgctgaaaataacttgttgactattattttcttcctaaaattcagtcacaactagctcattagcccgaggtatataagggacgttaacat
gi|2 : aactctccgttgaaagggccaattgtatatgggtcttttaaagagtatttatcaatcactaatcaaataatcgttTAT-TCAC---TGAAATAT--TTT-TTTAAATTTTAAGAACGAAT-GGAAAAC-AGATGATTGAGATGGAA-G-----GTCTTTTATTAAAATTTT-GAACCGGCATTGAGATTGTTATTTTGAACAAAAAG-AAATTGGAGTACTGCCAGTACTATACCGATATAGCATGTAACAACTGTACACTATGCAGTATCCG-ATAAT-ACGTAACTGTGATTTTATG-GGTTTGTAAAAAATAATG--AATTACTTCAGTCATTTACGAAAAACGAACTTTAGGATTGTGATTGTAAA--TAAAGT-GTTATACTGA-TTATTTC-CTTCAAAACGAACCTTAATGAGTCCTCTGTGGATGCTATGTTAATTTCGTTTTCTTGAAACCAC-----G-ATCTGCAAAAAAAATCTAT-TGACGTGAAATAAAAACAAACGCTGAT-------TA--AATGTTTAAACAATTGATATGTAATTGAAGATAATGAGGCATGT-CA---AT-GC-ATATGAAT--AAA-TGGA-CC--TT---GTT--CAGAGCC-TTGA--TG--TTACTCCCTGAAGA-
gi|10 : ttcgccgctgaaaaggacctattttgatatcgggttatttttaaatagaactttcaaagctttatcattagcacaacttggttatacaccaatcaaataatcaaGAACTGAT-C---AAC-TAGTGATTAAGGCG-AA-G-----GTCATTTACTAAAATTTC-GGAACGGAATTCACA----TGTATTG-ACAAAACG-AAATT--AATCCTGCCGGTACTATc
gi|14 : acatagttgctctgccacactaaggattaatttatacatgtaattctaaaatcGAACGGATCA---AAC-TAGTGAT-AAGGCG-AAAG-----GTCATTTACTAAAATTTC-GGAACGGAATTCACA----TG-TTTG-ACAATACGAAAATT--AATCCTGCgtaaa
gi|5 : ctctgccacactaagattaattatatacatgtaacttctaaaatc---AAA-AGATGATTGAGGTG-AA-G-----GTCGTTTACTAAAAT------------A---AGG----TGTTTTG-ACAAAACG-AAATT--GAATCTGCCT-TATTATAC------AT------------ATGAA--------TGTCCGCATAAT-ACGTA------ATTCCATG-GG--TGTAGAAAA-AGTGTAAATTA------TAAT----AAAAATAGAACTTCAGGTTTGT-------AAATTAAAGT-GTCATACTGGTTTATTCCTTTTCAAAACGAAC--TGATGA--------TGCA----ATA-TA--TTCGTTTTCTGAAAA--AC-----G-ATCTGC----AAAATAGTTATGATGTGAAATAATAACAAATTCCGAT-------TA--AATGTTTAAACGA-TG--ATGTATT------TGATTA---ATGAACACTGAT-GA-ATATGGATTAAAA-T---------------T--T---GTCA-TGAC-TGCTTT-ACCCCTGAAAA-TG-T-G---T----AGTGCCTGAAA------------------------T-TA--CTAT---TATTTTCACTCAAA-AT-A-TGTT----CCGAC-C-AGAATTCAGTCGAAA
gi|1 : ttggac---AAC-AAATGAAGAAGGTG-GA-G-----GTCGTTTCCTAAAACTTT-GCAAAGACATTGA--------TTTTG-ACAAAACG-AAATT--GATACTGTCAGCACTAT----------------------GAATA--------TG----CATAATTACGTA------ATTTCATG-GG--TGTAGGAAA-GGTGTAAATTA------TAATT---GAAAAAAGAACT----GTAT---TTT---AGT---AAGT-A-AATAAAAG---ACTCC-TTTAAAAATAAAC--TGATGA--------ATCA----ATA-TT--TTCGTTTCCCGAAAA--AA-----G-ACTTGC----AAAACAATTATGACGTGAAAtggggttaggatgttaga
gi|3 : aatcctcactgctgaaaaggccacttttgatatggattatttaaagaacgttcaaagctttatcagtaattaatggtcatcaccaaacaataatcgcactttaagccatgatgccacactaaggattaatcaataaatttaaaatcgaagtagacATAC------AT------------ATGCA--------TGTCCGCATAGT-ACGTT------ATTTCATA-TG--TATAAGAAA-GCTATAATTTA------T--TC---AAAACAA-AATT---GGTTTATatttattgttcgccattgactgctgtacttcctgaaaatatgtaaatgtctgagaatcactacaatacttgttctattacatttgtattttctctcaaaatatgctccaattaaaattcagtcggaactagctcgttaaaagtgggtttgggatgtttgagtatgaggtttatgtaaggaacattaaccaaggctctaaattgttggagcaggacgcg
gi|3 : tcacaaatcaaataatcgttattcattcaaagatgcacctttaaaatagagctgttttggcacactaagcattaatccataatttcaaaaacgaattgctaaacggatgattgaggtaaaggtcgattatcaaaggtttggaacgacattgagatgttttgacaaagcgaaattcatactgctagtactatacatatgcatgtccgcatagtacgttattgcatatgtataagnnnnnnATTGGTTTATTCCTTT-CAAAACGAAA--TGATGA--------TGTA----ATA-TT--TTCGTTTACTGAAAA--AC-----G-ATCCGC----AAAATAATTATGACGTGAAATAAAAACAAAGTCTGGT-------TA--AATGTTTAGACGA-TG--ATGTA------TGTGATTG---ATGAGAACTGAT-GCAATATGGATTAAAA-TGGA-TTTATT---GTT--T---GTCATTGAC-TGCTTTATCATATGAAAA-TA-T-G---T---AAGTGC-TGAAAATA--------A-C---T--TGT-T-GA--CTAT---TATTTTC---------T-T-C-----------C-T-AAAATTCAGTCACAACTAGCTCATTAtcctttcaaaacgaaatgatgatgtaatattttcgtttactgaaaaacgatccgcaaaataattatgacgtgaaataaaaacaaagtctggttaaatgtttagacgatgatgtatgtgattgatgagaactgatgcaatatggattaaaatggatttattgtttgtcattgactgctttatcatatgaaaatatgtaagtgctgaaaataacttgttgactattattttcttcctaaaattcagtcacaactagctcattagcccgaggtatataagggacgttaacat
gi|8 : tcacaaatcaaataatcgttattcattcaaagatgcacctttaaaatagagctgttttggcacactaagcattaatccataatttcaaaaacgaattgctaaacggatgattgaggtaaaggtcgattatcaaaggtttggaacgacattgagatgttttgacaaagcgaaattcatactgctagtactatacatatgcatgtccgcatagtacgttattgcatatgtataagnnnnnnatacatatgcatgtccgcatagtacgttatttcatatgtataagaaagctataatttattcaaaacaaaGAGGTCAAACCGAAACAAATTCTGGTGATCGGCTATTAATTTCCAAA--A-TA--ATTTAT-------TGATTA---ATGAACACTGCT-GA-ATACGTA-------TGGA-TTTATTTACGTTCAT---G---TTAACTTGCTTTGTCTACTGCAAA-AG-TCG---CATAAAGT-CTT-AAAATT--------A-A---TTCTGT-T-T------T---CTTTAAAACTAAAA-AT-T---TT----CC-AC-T-GAAATTCAGTTAAAAC--GATTATT-T--ACAATGA--GGCTCGGAgcccgaggtatataagggacgttaacat
gi|7 : GTCAAACAGAAACAAATTCTGGTGATGGC-TA--TACATTTCAA-AA-TA--ATTTATTTG------ATTA---ATGAACACTGCT-GA-ATACGGATC-AAG-TGGA-TTT-TTAC-GTT--C---ACTGTTAAC-TGCTTTGTCTACTGCAAA-TA-C-G---T---AAGGTCTT-AAAATT--------A-A---TTCTGT-T-T------T---CTTTAAAACTAAAA-AT-G-TGTT----CC-AC-T-GAAATTCAGTTAAAACGAGTTATTTAC--AAAATGA--GGCTCGGAgttaga
gi|9 : ACAC-GATTGC-AT-TG-GTTAAAG-TGGAATTTATT---G-T--T---GTCATTGAC-TGCTTTACAACCTGAAAATTG-T-G---T---CAGAGCCT-AAAATC--------A-C---T--TGTGC-CA--CTAT---TATTTGTGATAAAT-AT-T--GTT-----CGACGC-AATATCAGGTCGG-ACTAGCTCGTTAG--AAAATGGGTGGTTCGGAgttaga
gi|13 : aatgaTCAAAGATGGA-TTTATT---GTTA-T---GC-GTTGAC-TGCTT-ACCACTAGTAAA-TAAT-G---T---GAGT--CTGAAAA-C--------ATC---T--TGT-T-GG--CTAT---TAATTTTACTCAAATAT-G-C-TT----CCGAT-G-AAAATTCAGT-GGAACAAAC-AGTTGACCAAAATgttccgaggtattataaggtacgtaacgaggcctttaactttgttggagtac
gi|1 : A-TTTATT---GTT--C---GCCATTGAC-TGCTGTACTTCCTGAAAA-TA-T-G---T---AAATGTCTGAGAATCACTACAATA-C---T--TGT-TCTATTACATTTGTATTTTCTCTCAAA-AT-A-TGCT----CCAAT-T-AAAATTCAGTCGGAACTAGCTCGTT-A--AAAGT-G--GGTTTGGG
gi|15 : aatcctcactgctgaaaaggccacttttgatatggattatttaaagaacgttcaaagctttatcagtaattaatggtcatcaccaaacaataatcgcactttaagccatgatgccacactaaggattaatcaataaatttaaaatcgaagtagacaacaaatgaagaaggtggaggtcgtttcctaaaactttgcaaagacattgattttgacaaaacgaaattgatactgtcagcactatgaatatgcataattacgtaatttcatgggtgtaggaaaggtgtaaattataattgaaaaaagaactgtattttagtaagtaaataaaagactcctttaaaaataaactgatgaatcaatattttcgtttcccgaaaaaagacttgcaaaacaattatgacgtgaaaC-TGCTTCACCTTCTTAAAA-TA-C-AAAAT---AAGCACCT-AAAATA--------A-CATTT--TTT-T-TA--CTAT---CATTT------AAA-ATATACGTTATGTTCAAC-CCGAAATTCCGTCGGAACTGACACGTT-G--AAAATGA--GGTTTGGAatgtttgagtatgaggtttatgtaaggaacattaaccaaggctctaaattgttggagcaggacgcg
gi|17 : TTTTGCTGAAA-AT-C-C-TT----CCTAC-C-AAA-TTTAGTTGGAACGAGTTCCTTGA--AAAATGG--TGTTCGtgtta
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): TCTCGCCGCTGAAAAAGTCAATTTTGATATGGGTTGTTTAAAAGAAGCATTCAAAGATTTATCTTAACAAATGTTATCAACAATCAAATAATCAGTATTCATTAAAACGCACCTTAAAACATAGCTATTATGCCACACTAAGG
Unaligned ( gi|12 ): TCTCCGCTGAAAAAACCAATTTTGGTATGGGTTGTTTAAAGAGCATTCAAAGCTTTATAATGAACAAATGGTCATCACCAATCAAATATTCGTTATTTACACTCAGACATACCTCTAAAACAAAGTGATTATGCCATAA
Unaligned ( gi|16 ): TCTCGCCGCTGAAAAAGCCAATTTTGGTACGGGTTGTTTAAAGGACATTCAAAGCTTTATCCTTGTAACAAATGTTTATCGCCAATCAAAACAATATTCAAA
Unaligned ( gi|18 ): CCATCGAAATGGCCGATTTTGATATGGGCTGTTTAAAGAACATTCAAAGCTCTATCATT
Unaligned ( gi|19 ): AGAGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGAGTA
Alignments
lowQualScore : 11111 111 55555555555555555555555555555555555555555555 11111 11111 111111 555555555555555555555555 111111 333333333333333 22222 1 333333333333 111 11111 3333333 2222222 111 111 11111111 1111 22222222222222222222222 11111 22222 111 1111 11
lowQualScore : 77 3 8 0 55555 2 000 7 0 88888888888888888888888888888888888888888888 0 99999 5 88 5 77777 0 5 2 1 000000 5 5 777 2 33 77 5 444444444444444444444444 0 666666 5 77 1 5 1 1 888888888888888 6 2 33333 1 888 1 3 9 3 99 444444444444 111 99 66666 6 99 6 5555555 77 6 6 99 3 7777777 5 000 5 66 1 44 11 88 4 0 333 88888888 4 4 4 2222 4 777 0 888 6 55555555555555555555555 11111 22222 2 8 444 8888 8 0000 4 4 0 4 1 33 66
lowQualScore : .. . . . ..... . ... . . ............................................ . ..... . .. . ..... . . . . ...... . . ... . .. .. . ........................ . ...... . .. . . . . ............... . . ..... . ... . . . . .. ............ ... .. ..... . .. . ....... .. . . .. . ....... . ... . .. . .. .. .. . . ... ........ . . . .... . ... . ... . ....................... ..... ..... . . ... .... . .... . . . . . .. ..
lowQualScore : 22 2 8 8 22222 2 000 9 1 77777777777777777777777777777777777777777777 2 11111 0 55 0 55555 2 0 5 4 999999 0 0 666 8 77 99 7 666666666666666666666666 7 444444 7 99 7 7 0 4 333333333333333 7 5 55555 7 333 0 2 8 2 22 222222222222 777 22 77777 7 22 7 0000000 99 7 7 22 5 3333333 7 000 7 77 4 44 00 44 4 8 999 00000000 0 9 0 5555 4 888 8 666 7 44444444444444444444444 11111 55555 4 0 777 5555 2 9999 0 0 7 4 9 88 99
consensus : ATTCATTCGAAGACGCACNTTTAAAACAAAGCTATTNT-GCCACACTAAGNAT--TTATTCAC-TANA---AT--T--TCTA--NAA---TCGAGAACGGAC-G---AA-CAGATGATTGAGGTG-AA-----GGTCGTTTACTAAAATTTC-GGAACGGCATTGAGA----TGTTTTG-ACAAAACG-AAATT--AATNCTGCCNGTACTATAC--ATAT-GCATG-----------------------TCCGCATAATACGTA------ATTTCATG-GG--TGTAGGAAA-GGTGTAAATTA------TAAT---CGAAAAA-AGAACTTTAGGTTTGTG-TT-TAAATTAAAG-TGTCATACTGGTTTATTCCTTTTCAAAACGAAC--TGAT------------GATGCAATAT---TTTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATAA--TTA-TGACGTGAAATAAAAACAAATTCTGGT-------TA--AATGTTTAAACGA-TG--ATGTATT----TGTGATTAATGA-ACACTG---AT-G-AATACGGATTAAAG-TGGA-TTTATT---GTTC---GCCGTTGAC-TGCTTTACCNCCTG-AAAA----TA-TG---TAAGTGCCTGAAAATC--------A-C---TTGT-T-TACTAT-----TATTTTC---GCTNAAA-ATNCGTT----CCGACC-GAAAT-TCA-GTCGGAACTAGCTCGTTANAAAATGG--GGTTCGGAT
Reference ( family-142 ) : ATTCATTCAAAGACGCACNTTTAAAATAGAGCTGTTTT-GGCACACTAAGCNC--TTATTCAC-TANA---AT--T--TCNA--TAA---TTAAGAACGGAT-G---AA-CAGATGATTGAGGTG-AA-----GGTCGTTTACTAAAATTTC-GGAACGGCATTGAGA----TGTTTTG-ACAAAACG-AAATT--AATNCTGCCNGTACTATAC--ATAT-GCATG-----------------------TCCGCATAATACGTA------ATTTCATG-GG--TGTAAGAAA-GGTGTAAATTA------TNAT---CGAAAAA-AGAACTTTAGGTTTGTG-TT-TAAATTAAAG-TGTCATACTGGTTTATTCCTTTTCAAAACGAAC--TGAT------------GATGCAATAT---TTTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATAA--TTA-TGACGTGAAATAAAAACAAATTCTGGT-------TA--AATGTTTAAACGA-TG--ATGTATT----TGTGATTAATGA-ACACTG---AT-G-NATACGGATTAAAG-TGGA-TTTATT---GTTC---GCCGTTGAC-TGCTTTACCNCCTG-AAAA----TA-TG---TAAGTGCCTGAAAATC--------A-C---TTGT-T-TACTAT-----TATTTTC---GCTNAAA-ATNCGTT----CCGACC-GAAAT-TCA-GTCGGAACTAGCTCGTTANAAAATGG--GGTTCGGAT
gi|1 : CGCAC-TTTAA------GCCATGAT-GCCACACTAAGGA---TTAATCAA-TA-A---AT--T--T--A--AAA---TCGA-AGTAGAC-----AA-CAAATGAAGAAGGTG-GA-----GGTCGTTTCCTAAAACTTT-GCAAAGACATTGA--------TTTTG-ACAAAACG-AAATT--GATACTGTCAGCACTATGA--ATAT-GCATA----------------------------AT--TACGTA------ATTTCATG-GG--TGTAGGAAA-GGTGTAAATTA------TAAT---TGAAAAA-AGAACTGTATTTTAGTA-AG-TAAATAAAAG-------ACT---------CCTTTAAAAATAAAC--TGAT------------GAATCAATAT---TTTCGTTTCCCGAAAA--AA-----G-ACTTGCAAAACAA--TTA-TGACGTGAAA
gi|1 : aatcctcactgctgaaaaggccacttttgatatggattatttaaagaacgttcaaagctttatcagtaattaatggtcatcaccaaacaataatA-TTTATT---GTTC---GCCATTGAC-TGCTGTACTTCCTG-AAAA----TA-TG---TAAATGTCTGAGAATCACTACAATA-C---TTGT-TCTATTACATTTGTATTTTC---TCTCAAA-ATATGCT----CCAATT-AAAAT-TCA-GTCGGAACTAGCTCGTTA-AAAGTGG--GTTTGGGATatttattgttcgccattgactgctgtacttcctgaaaatatgtaaatgtctgagaatcactacaatacttgttctattacatttgtattttctctcaaaatatgctccaattaaaattcagtcggaactagctcgttaaaagtgggtttgggatgtttgagtatgaggtttatgtaaggaacattaaccaaggctctaaattgttggagcaggacgcg
gi|10 : aatcctcactgctgaaaaggccacttttgatatggattatttaaagaacgttcaaagctttatcagtaattaatggtcatcaccaaacaataatcgcactttaagccatgatgccacactaaggattaatcaataaatttaaaatcgaagtagacaacaaatgaagaaggtggaggtcgtttcctaaaactttgcaaagacattgattttgacaaaacgaaattgatactgtcagcactatgaatatgcataattacgtaatttcatgggtgtaggaaaggtgtaaattataattgaaaaaagaactgtattttagtaagtaaataaaagactcctttaaaaataaactgatgaatcaatattttcgtttcccgaaaaaagacttgcaaaacaattatgacgtgaaaAGTTGCTCT-GCCACACTAAGGAT--TAATTTA--TACATGTAA--T--TCTA--AAA---TC--GAACTGAT-C---AA-CTAGTGATTAAGGCG-AA-----GGTCATTTACTAAAATTTC-GGAACGGAATTCACA----TGTATTG-ACAAAACG-AAATT--AATCCTGCCGGTACTATgtttgagtatgaggtttatgtaaggaacattaaccaaggctctaaattgttggagcaggacgcg
gi|11 : acatATTCATT--AAAACGCACCTT-AAAACATAGCTATTAT-GCCACACTAAGgtaaa
gi|13 : tctcgccgctgaaaaagtcaattttgatatgggttgtttaaaagaagcattcaaagatttatcttaacaaatgttatcaacaatcaaataatcagtTCAAAGATGGA-TTTATT---GTTA---TGCGTTGAC-TGCTT-ACCACTAG-TAAA----TAATG---TGAGT--CTGAAAA-C--------ATC---TTGT-T-GGCTAT-----TAATTTT---ACTCAAATATGC-TT----CCGATG-AAAAT-TCA-GT-GGAACg
gi|14 : TCT-GCCACACTAAGATTAATTATATACATGTA---AC--T--TCTA--AAA---TC--GAACGGATCA---AA-CTAGTGAT-AAGGCG-AAA----GGTCATTTACTAAAATTTC-GGAACGGAATTCACA----TG-TTTG-ACAATACGAAAATT--AATCCTGCaaacagttgaccaaaat
gi|15 : cC-TGCTTCACCTTCTT-AAAA----TA-CAAAATAAGCACCT-AAAATA--------A-CATTTTTT-T-TACTAT-----CATTT--------AAAATATACGTTATGTTCAACCCGAAAT-TCC-GTCGGAACTGACACGTT-GAAAATGA--GGTTTGGAT
gi|17 : TTTT---GCTGAAA-ATCC-TT----CCTACC--AAAT-TTA-GTTGGAACGAGTTCCTTGAAAAATGG--TGTTCGtgtta
gi|2 : TATTCAC-TGAA---ATATT--TTTT--TAAATTTTAAGAACGAAT-GGAAAA-CAGATGATTGAGATGGAA-----GGTCTTTTATTAAAATTTT-GAACCGGCATTGAGATTGTTATTTTGAACAAAAAG-AAATTGGAGTACTGCCAGTACTATACCGATATAGCATGTAACAACTGTACACTATGCAGTATCCG-ATAATACGTAACTGTGATTTTATG-GGTTTGTAAAAAATAATG--AATTACTTCAGTCATTTACGAAAAA-CGAACTTTAGGATTGTGATTGTAAA-TAAAG-TGTTATACTGA-TTATTTC-CTTCAAAACGAACCTTAATGAGTCCTCTGTGGATGCTATGTTAATTTCGTTTTCTTGAAACCAC-----G-ATCTGCAAAAAAAATCTATTGACGTGAAATAAAAACAAACGCTGAT-------TA--AATGTTTAAACAATTGATATGTAAT----TGAAGATAATGAGGCA-TGTCAAT-G-CATATGAAT--AAA-TGGA-CC--TT---GTTCAGAGCC-TTGA--TG--TTACTCCCTG-AAGA----
gi|3 : ttcgccgctgaaaaggacctattttgatatcgggttatttttaaatagaactttcaaagctttatcattagcacaacttggttatacaccaatcaaataatcaaATTCATTCAAAGATGCACCTTTAAAATAGAGCTGTTTT-GGCACACTAAGCAT--TAATCCA----TA---AT--T--TCAA--AAA---C---GAATTGCT-A---AA-CGGATGATTGAGGTA-AA-----GGTCGATTATCAAAGGTTT-GGAACGACATTGAGA----TGTTTTG-ACAAAGCG-AAATT--CATACTGCTAGTACTATAC--ATAT-GCATG-----------------------TCCGCATAGTACGTT------ATTGCATA-TG--TATAAGNNN-NNNATACATc
gi|3 : tcacaaatcaaataatcgttATAC--ATAT-GCATG-----------------------TCCGCATAGTACGTT------ATTTCATA-TG--TATAAGAAA-G-------CTA------TAAT-----------------TTA---------TT-CAAAACAAAA-T-------TGGTTTATTCCTTT-CAAAACGAAA--TGAT------------GATGTAATAT---TTTCGTTTACTGAAAA--AC-----G-ATCCGCAAAATAA--TTA-TGACGTGAAATAAAAACAAAGTCTGGT-------TA--AATGTTTAGACGA-TG--ATGTA------TGTGATTGATGA-GAACTG---AT-GCAATATGGATTAAAA-TGGA-TTTATT---GTTT---GTCATTGAC-TGCTTTATCATATG-AAAA----TA-TG---TAAGTG-CTGAAAATA--------A-C---TTGT-T-GACTAT-----TATTTTC----------------TT----CCTA----AAAT-TCA-GTCACAACTAGCTCATTAatgcatgtccgcatagtacgttatttcatatgtataagaaagctataatttattcaaaacaaaattggtttattcctttcaaaacgaaatgatgatgtaatattttcgtttactgaaaaacgatccgcaaaataattatgacgtgaaataaaaacaaagtctggttaaatgtttagacgatgatgtatgtgattgatgagaactgatgcaatatggattaaaatggatttattgtttgtcattgactgctttatcatatgaaaatatgtaagtgctgaaaataacttgttgactattattttcttcctaaaattcagtcacaactagctcattagcccgaggtatataagggacgttaacat
gi|4 : tcacaaatcaaataatcgttattcattcaaagatgcacctttaaaatagagctgttttggcacactaagcattaatccataatttcaaaaacgaattgctaaacggatgattgaggtaaaggtcgattatcaaaggtttggaacgacattgagatgttttgacaaagcgaaattcatactgctagtactatacatatgcatgtccgcatagtacgttattgcatatgtataagnnnnnnATTCATTTGAAGA-GCATATTTCA--TAAAACTACCGGAGGGACA--GAGTG---TTATTTAC-CAGA---ATG-T--TCCACTTAA---CGGAGAATGAAT-G---AA-CAGATGATTCAGGTG-AA-----GGTAGTTTACTAAAATTTC-GGAATGGAATTCAGG----TGTTTTG-ACAAAACG-AAATT--AATTTTGCCCGTACTATAC--AGGT-ACATG-----------------------TCCGCATAATACGTA------ATTTCATG-GG--TGTAGGAAA-AGTGTAAATTA------TAAT---TAAAAAA-AGAACTCCAGGTTTGTG-TT-TAATTTAAAG-TGTCATATTGGTTTATTCCTTTTCAAAACGAAC--TGAT------------GATGAAATAT---ATTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATTT--TTA-TGATGTGAAATAAAAACAAATTCAGGT-------TA--AATGTTTAAACGA-TG--ATGTATTTGTCTGTGATTAATTT-ACACTG---AT-G-CATATGTATTAAAG-TGGA-TTTATT---GCTT---GCCATTGAC-TGCTTTAACACCTG-AAAA----TG-TG---TAAGTGCTTGAAAATC--------A-C---TTGT-T-TAATAT-----CATTTTC---ACTCAAA-ATTCGTT----CCGACC-AAAAT-TCA-ATCGGAACTAGCTCGTTAAAAAATGG--GGTTCGGGTgcccgaggtatataagggacgttaacat
gi|5 : GGAC-A---AA--AGATGATTGAGGTG-AA-----GGTCGTTTACTAAAAT---------------AAGG----TGTTTTG-ACAAAACG-AAATT--GAATCTGCCT-TATTATAC--ATAT-GAATG-----------------------TCCGCATAATACGTA------ATTCCATG-GG--TGTAGAAAA-AGTGTAAATTA------TAAT-----AAAAATAGAACTTCAGGTTTGT------AAATTAAAG-TGTCATACTGGTTTATTCCTTTTCAAAACGAAC--TGAT------------GATGCAATAT---ATTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATAG--TTA-TGATGTGAAATAATAACAAATTCCGAT-------TA--AATGTTTAAACGA-TG--ATGTATT------TGATTAATGA-ACACTG---AT-G-AATATGGATTAAA-----A-TTTGTC---A-----------TGAC-TGCTTTACC-CCTG-AAAA----TG-TG---T-AGTGCCTGAAA----------------------T-TACTAT-----TATTTTC---ACTCAAA-ATATGTT----CCGACC-AGAAT-TCA-GTCG----------------AAATGG--GGTTAGGAT
gi|6 : ttATTCATTCAAAGACGTACATTTAAAACAAAGTTCTTAT-GTCACACT-----------------TAGG---AT--TAATCCA--TAA---TTAAAAATAAAC-G---AATTAGAAAAC--AGGTG-AAGTTTTGGTCGTTTA-TGAAACTTCTGGAACGGCAATGAGA----TTTTATG-ACAAAACG-AAAT--------TGC-------ATGT--ATAT-GCATG-----------------------ACCGCATAATAAGTA------AGTTCATGAGG--T-TGAGAAA-GGTATAAATTA------TC---------AGA-AGAACTTTGGGTTTATA-TG-TAAA-TAAAGTTGTCATACTGGTTTATTCC-TTGCAAAACGAAC--TGAA------------GATACAATAG---TTTCGTTTTCTGAAAA--ACTACATGTATCTGCAAAATAA--TTA-TGACATGAAATAAAAACAAATTTTGGT-------CA--ACTGTTgttaga
gi|7 : aactctccgttgaaagggccaattgtatatgggtcttttaaagagtatttatcaatcactaatcaaataatcgttGTCAAACAGAAACAAATTCTGGTGATGGC-TA--TACATTTCAA-AA-TA--ATTTATT----TG--ATTAATGA-ACACTG---CT-G-AATACGGATC-AAG-TGGA-TTT-TTAC-GTTC---ACTGTTAAC-TGCTTTGTCTACTG-CAAA----TA-CG---TAAG-GTCTTAAAATT--------A-A---TT-------CTGT-----TTTCTTTAAAACTAAAA-ATGTGTT----CC-ACT-GAAAT-TCA-GTTAAAACGAGTTATTTACAAAATGA--GGCTCGGAT
gi|8 : GAGGTCAAACCGAAACAAATTCTGGTGATCGGCTATTAATTTCCAAA--A-TA--ATTTATT-------GATTAATGA-ACACTG---CT-G-AATACG---TA----TGGA-TTTATTTACGTTC---A-TGTTAACTTGCTTTGTCTACTGCAAAAGTCGCA-TA----AAGT--CTTAAAATT--------A-A---TT-------CTGT-----TTTCTTTAAAACTAAAA-ATT--TT----CC-ACT-GAAAT-TCA-GTTAAAAC--GATTATT-TACAATGA--GGCTCGGATgttaga
gi|9 : AATGA-ACAC-G---ATTG-CAT-TGG-TTAAAG-TGGAATTTATT---GTT----GTCATTGAC-TGCTTTACAACCTG-AAAAT---TG-TG---TCAGAGCCT-AAAATC--------A-C---TTGTGC-CACTAT-----TATTTGT---GATAAAT-ATT-GTT-----CGA-C-GCAATATCAGGTCGG-ACTAGCTCGTTAGAAAATGGGTGGTTCGGATgttaga
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TCTCCGCTGAAAAAACCAATTTTGGTATGGGTTGTTTAAAGAGCATTCAAAGCTTTATAATGAACAAATGGTCATCACCAATCAAATATTCGTTATTTACACTCAGACATACCTCTAAAACAAAGTGATTATGCCATAA
Unaligned ( gi|16 ): TCTCGCCGCTGAAAAAGCCAATTTTGGTACGGGTTGTTTAAAGGACATTCAAAGCTTTATCCTTGTAACAAATGTTTATCGCCAATCAAAACAATATTCAAA
Unaligned ( gi|18 ): CCATCGAAATGGCCGATTTTGATATGGGCTGTTTAAAGAACATTCAAAGCTCTATCATT
Unaligned ( gi|19 ): AGAGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGAGTA
Alignments
lowQualScore : 11 1111 555555555555555555555 22222 111111 11111 111111 555555555555555555555555 111111 111111 33333 22222 1 333333333333 111 11111 3333333 3333333 111 111 11111111 1111 22222222222222222222222 11111 22222 111 1111 11
lowQualScore : 44 1 1 7 3 0 1 5 2222 333333333333333333333 2 888 00000 0 777777 5 88 5 77777 0 5 2 1 000000 5 5 777 2 33 77 5 444444444444444444444444 0 666666 5 77 1 5 1 1 999999 33333 6 2 33333 1 888 1 3 9 3 99 444444444444 111 99 66666 6 99 6 5555555 77 6 6 99 1111111 5 000 5 77 1 44 11 88 4 0 333 88888888 4 4 4 2222 4 777 0 33 6 55555555555555555555555 11111 22222 2 8 444 8888 8 0000 4 4 0 4 1 33 66
lowQualScore : .. . . . . . . . .... ..................... . ... ..... . ...... . .. . ..... . . . . ...... . . ... . .. .. . ........................ . ...... . .. . . . . ...... ..... . . ..... . ... . . . . .. ............ ... .. ..... . .. . ....... .. . . .. ....... . ... . .. . .. .. .. . . ... ........ . . . .... . ... . .. . ....................... ..... ..... . . ... .... . .... . . . . . .. ..
lowQualScore : 66 0 0 3 2 6 0 0 7777 666666666666666666666 4 999 77777 2 111111 0 55 0 55555 2 0 5 4 999999 0 0 666 8 77 99 7 666666666666666666666666 7 444444 7 99 7 7 0 4 222222 00000 7 5 55555 7 333 0 2 8 2 22 222222222222 777 22 77777 7 22 7 0000000 99 7 7 22 3333333 7 000 7 00 4 44 00 44 4 8 999 00000000 0 9 0 5555 4 888 8 99 7 44444444444444444444444 11111 55555 4 0 777 5555 2 9999 0 0 7 4 9 88 99
consensus : ATTCATTCGAAGACGCACCTTTAAAACAAAGCTATTNT-GCCACACTAAGG---ATT-AATTCA-TANA---AT----TTCTAA--AATC-GAGAACGGA-CG---AA-CAGATGATTGAGGTG-AA-----GGTCGTTTACTAAAATTTC-GGAACGGCATTGAGA----TGTTTTG-ACAAAACG-AAATT--AATNCTGCCNGTACTATAC--ATAT-GCATG-----------------------TCCGCATAATACGTA------ATTTCATG-GG--TGTAGGAAA-GGTGTAAATTA------TAAT---CGAAAAA-AGAACTTTAGGTTTGTG-TT-TAAATTAAAG-TGTCATACTGGTTTATTCCTTTTCAAAACGAAC--TGAT------------GATGCAATAT---TTTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATAA--TTA-TGACGTGAAATAAAAACAAATTCTGGT-------TA--AATGTTTAAACGA-TG--ATGTATT----TGTGATTAATGA-ACACTG---AT-G-AATACGGATTAAAG-TGGA-TTTATT---GTTC---GCCGTTGAC-TGCTTTACCNCCTG-AAAA----TA-TG---TAAGTGCCTGAAAATC--------A-C---TTGT-T-TACTAT-----TATTTTC---GCTNAAA-ATNCGTT----CCGACC-GAAAT-TCA-GTCGGAACTAGCTCGTTANAAAATGG--GGTTCGGAT
Reference ( family-142 ) : ATTCATTCGAAGACGCACNTTTAAAACAAAGCTATTNT-GCCACACTAAGN---ATT-TATTCACTANA---AT----TTCTAN--AATC-GAGAACGGA-CG---AA-CAGATGATTGAGGTG-AA-----GGTCGTTTACTAAAATTTC-GGAACGGCATTGAGA----TGTTTTG-ACAAAACG-AAATT--AATNCTGCCNGTACTATAC--ATAT-GCATG-----------------------TCCGCATAATACGTA------ATTTCATG-GG--TGTAGGAAA-GGTGTAAATTA------TAAT---CGAAAAA-AGAACTTTAGGTTTGTG-TT-TAAATTAAAG-TGTCATACTGGTTTATTCCTTTTCAAAACGAAC--TGAT------------GATGCAATAT---TTTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATAA--TTA-TGACGTGAAATAAAAACAAATTCTGGT-------TA--AATGTTTAAACGA-TG--ATGTATT----TGTGATTAATGA-ACACTG---AT-G-AATACGGATTAAAG-TGGA-TTTATT---GTTC---GCCGTTGAC-TGCTTTACCNCCTG-AAAA----TA-TG---TAAGTGCCTGAAAATC--------A-C---TTGT-T-TACTAT-----TATTTTC---GCTNAAA-ATNCGTT----CCGACC-GAAAT-TCA-GTCGGAACTAGCTCGTTANAAAATGG--GGTTCGGAT
gi|1 : CGCACTTT-------AAGCCATGAT-GCCACACTAAGG---ATT-AAT-CAATA-A---AT----TT--AA--AATC-GA-AGTAGA-C----AA-CAAATGAAGAAGGTG-GA-----GGTCGTTTCCTAAAACTTT-GCAAAGACATTGA--------TTTTG-ACAAAACG-AAATT--GATACTGTCAGCACTATGA--ATAT-GCATA----------------------------AT--TACGTA------ATTTCATG-GG--TGTAGGAAA-GGTGTAAATTA------TAAT---TGAAAAA-AGAACTGTATTTTAGTA-AG-TAAATAAAAG-------ACT---------CCTTTAAAAATAAAC--TGAT------------GAATCAATAT---TTTCGTTTCCCGAAAA--AA-----G-ACTTGCAAAACAA--TTA-TGACGTGAAA
gi|1 : aatcctcactgctgaaaaggccacttttgatatggattatttaaagaacgttcaaagctttatcagtaattaatggtcatcaccaaacaataatA-TTTATT---GTTC---GCCATTGAC-TGCTGTACTTCCTG-AAAA----TA-TG---TAAATGTCTGAGAATCACTACAATA-C---TTGT-TCTATTACATTTGTATTTTC---TCTCAAA-ATATGCT----CCAATT-AAAAT-TCA-GTCGGAACTAGCTCGTTA-AAAGTGG--GTTTGGGATatttattgttcgccattgactgctgtacttcctgaaaatatgtaaatgtctgagaatcactacaatacttgttctattacatttgtattttctctcaaaatatgctccaattaaaattcagtcggaactagctcgttaaaagtgggtttgggatgtttgagtatgaggtttatgtaaggaacattaaccaaggctctaaattgttggagcaggacgcg
gi|10 : aatcctcactgctgaaaaggccacttttgatatggattatttaaagaacgttcaaagctttatcagtaattaatggtcatcaccaaacaataatcgcactttaagccatgatgccacactaaggattaatcaataaatttaaaatcgaagtagacaacaaatgaagaaggtggaggtcgtttcctaaaactttgcaaagacattgattttgacaaaacgaaattgatactgtcagcactatgaatatgcataattacgtaatttcatgggtgtaggaaaggtgtaaattataattgaaaaaagaactgtattttagtaagtaaataaaagactcctttaaaaataaactgatgaatcaatattttcgtttcccgaaaaaagacttgcaaaacaattatgacgtgaaaACATAGTTGCTCT-GCCACACTAAGG---ATT-AATTTA-TACATGTAA----TTCTAA--AATC---GAACTGA-TC---AA-CTAGTGATTAAGGCG-AA-----GGTCATTTACTAAAATTTC-GGAACGGAATTCACA----TGTATTG-ACAAAACG-AAATT--AATCCTGCCGGTACTATgtttgagtatgaggtttatgtaaggaacattaaccaaggctctaaattgttggagcaggacgcg
gi|11 : ATTCATT--AAAACGCACCTT-AAAACATAGCTATTAT-GCCACACTAAGgtaaa
gi|12 : tctcgccgctgaaaaagtcaattttgatatgggttgtttaaaagaagcattcaaagatttatcttaacaaatgttatcaacaatcaaataatcagtCACTC--AGACATACCTCTAAAACAAAGTGATTAT-GCCATAg
gi|13 : tctccgctgaaaaaaccaattttggtatgggttgtttaaagagcattcaaagctttataatgaacaaatggtcatcaccaatcaaatattcgttatttaTCAAAGATGGA-TTTATT---GTTA---TGCGTTGAC-TGCTT-ACCACTAG-TAAA----TAATG---TGAGT--CTGAAAA-C--------ATC---TTGT-T-GGCTAT-----TAATTTT---ACTCAAATATGC-TT----CCGATG-AAAAT-TCA-GT-GGAACa
gi|14 : TCT-GCCACACTAAGATTAATTATATACA-TGTA---AC----TTCTAA--AATC-GA--ACGGATCA---AA-CTAGTGAT-AAGGCG-AAA----GGTCATTTACTAAAATTTC-GGAACGGAATTCACA----TG-TTTG-ACAATACGAAAATT--AATCCTGCaaacagttgaccaaaat
gi|15 : cC-TGCTTCACCTTCTT-AAAA----TA-CAAAATAAGCACCT-AAAATA--------A-CATTTTTT-T-TACTAT-----CATTT--------AAAATATACGTTATGTTCAACCCGAAAT-TCC-GTCGGAACTGACACGTT-GAAAATGA--GGTTTGGAT
gi|17 : TTTT---GCTGAAA-ATCC-TT----CCTACC--AAAT-TTA-GTTGGAACGAGTTCCTTGAAAAATGG--TGTTCGtgtta
gi|2 : -TATTCACTGAA---ATATTTTTTTAA--ATTTTAAGAACGAA-TGGAAAA-CAGATGATTGAGATGGAA-----GGTCTTTTATTAAAATTTT-GAACCGGCATTGAGATTGTTATTTTGAACAAAAAG-AAATTGGAGTACTGCCAGTACTATACCGATATAGCATGTAACAACTGTACACTATGCAGTATCCG-ATAATACGTAACTGTGATTTTATG-GGTTTGTAAAAAATAATG--AATTACTTCAGTCATTTACGAAAAA-CGAACTTTAGGATTGTGATTGTAAA-TAAAG-TGTTATACTGA-TTATTTC-CTTCAAAACGAACCTTAATGAGTCCTCTGTGGATGCTATGTTAATTTCGTTTTCTTGAAACCAC-----G-ATCTGCAAAAAAAATCTATTGACGTGAAATAAAAACAAACGCTGAT-------TA--AATGTTTAAACAATTGATATGTAAT----TGAAGATAATGAGGCA-TGTCAAT-G-CATATGAAT--AAA-TGGA-CC--TT---GTTCAGAGCC-TTGA--TG--TTACTCCCTG-AAGA----
gi|3 : ttcgccgctgaaaaggacctattttgatatcgggttatttttaaatagaactttcaaagctttatcattagcacaacttggttatacaccaatcaaataatcaaATTCATTCAAAGATGCACCTTTAAAATAGAGCTGTTTT-GGCACACTAAGC---ATT-AATCCA---TA---AT----TTCAAA--AAC----GAATTGC-TA---AA-CGGATGATTGAGGTA-AA-----GGTCGATTATCAAAGGTTT-GGAACGACATTGAGA----TGTTTTG-ACAAAGCG-AAATT--CATACTGCTAGTACTATAC--ATAT-GCATG-----------------------TCCGCATAGTACGTT------ATTGCATA-TG--TATAAGNNN-NNNATACATc
gi|3 : tcacaaatcaaataatcgttATAC--ATAT-GCATG-----------------------TCCGCATAGTACGTT------ATTTCATA-TG--TATAAGAAA-G-------CTA------TAAT-----------------TTA---------TT-CAAAACAAAA-T-------TGGTTTATTCCTTT-CAAAACGAAA--TGAT------------GATGTAATAT---TTTCGTTTACTGAAAA--AC-----G-ATCCGCAAAATAA--TTA-TGACGTGAAATAAAAACAAAGTCTGGT-------TA--AATGTTTAGACGA-TG--ATGTAT------GTGATTGATGA-GAACTG---AT-GCAATATGGATTAAAA-TGGA-TTTATT---GTTT---GTCATTGAC-TGCTTTATCATATG-AAAA----TA-TG---TAAGTGC-TGAAAATA--------A-C---TTGT-T-GACTAT-----TATTTTC----------------TT----CCTA----AAAT-TCA-GTCACAACTAGCTCATTAatgcatgtccgcatagtacgttatttcatatgtataagaaagctataatttattcaaaacaaaattggtttattcctttcaaaacgaaatgatgatgtaatattttcgtttactgaaaaacgatccgcaaaataattatgacgtgaaataaaaacaaagtctggttaaatgtttagacgatgatgtatgtgattgatgagaactgatgcaatatggattaaaatggatttattgtttgtcattgactgctttatcatatgaaaatatgtaagtgctgaaaataacttgttgactattattttcttcctaaaattcagtcacaactagctcattagcccgaggtatataagggacgttaacat
gi|4 : tcacaaatcaaataatcgttattcattcaaagatgcacctttaaaatagagctgttttggcacactaagcattaatccataatttcaaaaacgaattgctaaacggatgattgaggtaaaggtcgattatcaaaggtttggaacgacattgagatgttttgacaaagcgaaattcatactgctagtactatacatatgcatgtccgcatagtacgttattgcatatgtataagnnnnnnATTCATTTGAAGA-GCATATTTCA--TAAAACTACCGGAGGGACA--GAGT---GTT--ATTTACCAGA---ATG---TTCCACTTAACG-GAGAATGAA-TG---AA-CAGATGATTCAGGTG-AA-----GGTAGTTTACTAAAATTTC-GGAATGGAATTCAGG----TGTTTTG-ACAAAACG-AAATT--AATTTTGCCCGTACTATAC--AGGT-ACATG-----------------------TCCGCATAATACGTA------ATTTCATG-GG--TGTAGGAAA-AGTGTAAATTA------TAAT---TAAAAAA-AGAACTCCAGGTTTGTG-TT-TAATTTAAAG-TGTCATATTGGTTTATTCCTTTTCAAAACGAAC--TGAT------------GATGAAATAT---ATTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATTT--TTA-TGATGTGAAATAAAAACAAATTCAGGT-------TA--AATGTTTAAACGA-TG--ATGTATTTGTCTGTGATTAATTT-ACACTG---AT-G-CATATGTATTAAAG-TGGA-TTTATT---GCTT---GCCATTGAC-TGCTTTAACACCTG-AAAA----TG-TG---TAAGTGCTTGAAAATC--------A-C---TTGT-T-TAATAT-----CATTTTC---ACTCAAA-ATTCGTT----CCGACC-AAAAT-TCA-ATCGGAACTAGCTCGTTAAAAAATGG--GGTTCGGGTgcccgaggtatataagggacgttaacat
gi|5 : GGA-CA---AA--AGATGATTGAGGTG-AA-----GGTCGTTTACTAAAAT---------------AAGG----TGTTTTG-ACAAAACG-AAATT--GAATCTGCCT-TATTATAC--ATAT-GAATG-----------------------TCCGCATAATACGTA------ATTCCATG-GG--TGTAGAAAA-AGTGTAAATTA------TAAT-----AAAAATAGAACTTCAGGTTTGT------AAATTAAAG-TGTCATACTGGTTTATTCCTTTTCAAAACGAAC--TGAT------------GATGCAATAT---ATTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATAG--TTA-TGATGTGAAATAATAACAAATTCCGAT-------TA--AATGTTTAAACGA-TG--ATGTATT------TGATTAATGA-ACACTG---AT-G-AATATGGATTAAA-----A-TTTGTC---A-----------TGAC-TGCTTTACC-CCTG-AAAA----TG-TG---T-AGTGCCTGAAA----------------------T-TACTAT-----TATTTTC---ACTCAAA-ATATGTT----CCGACC-AGAAT-TCA-GTCG----------------AAATGG--GGTTAGGAT
gi|6 : ttATTCATTCAAAGACGTACATTTAAAACAAAGTTCTTAT-GTCACACTTAGG---ATT-----------A---A------TCCAT--AATT-AAAAATAAA-CG---AATTAGAAAAC--AGGTG-AAGTTTTGGTCGTTTA-TGAAACTTCTGGAACGGCAATGAGA----TTTTATG-ACAAAACG-AAAT--------TGC-------ATGT--ATAT-GCATG-----------------------ACCGCATAATAAGTA------AGTTCATGAGG--T-TGAGAAA-GGTATAAATT---------AT---C---AGA-AGAACTTTGGGTTTATA-TG-TAAA-TAAAGTTGTCATACTGGTTTATTCC-TTGCAAAACGAAC--TGAA------------GATACAATAG---TTTCGTTTTCTGAAAA--ACTACATGTATCTGCAAAATAA--TTA-TGACATGAAATAAAAACAAATTTTGGT-------CA--ACTGTTgttaga
gi|7 : aactctccgttgaaagggccaattgtatatgggtcttttaaagagtatttatcaatcactaatcaaataatcgttGTCAAACAGAAACAAATTCTGGTGATGGC-TA--TACATTTCAA-AA-TA--ATTTATT----TG--ATTAATGA-ACACTG---CT-G-AATACGGATC-AAG-TGGA-TTT-TTAC-GTTC---ACTGTTAAC-TGCTTTGTCTACTG-CAAA----TA-CG---TAAG-GTCTTAAAATT--------A-A---TT-------CTGT-----TTTCTTTAAAACTAAAA-ATGTGTT----CC-ACT-GAAAT-TCA-GTTAAAACGAGTTATTTACAAAATGA--GGCTCGGAT
gi|8 : GAGGTCAAACCGAAACAAATTCTGGTGATCGGCTATTAATTTCCAAA--A-TA--ATTTATT-------GATTAATGA-ACACTG---CT-G-AATACG---TA----TGGA-TTTATTTACGTTC---A-TGTTAACTTGCTTTGTCTACTGCAAAAGTCGCA-TA----AAGT--CTTAAAATT--------A-A---TT-------CTGT-----TTTCTTTAAAACTAAAA-ATT--TT----CC-ACT-GAAAT-TCA-GTTAAAAC--GATTATT-TACAATGA--GGCTCGGATgttaga
gi|9 : AATGA-ACAC-G---ATTG-CAT-TGG-TTAAAG-TGGAATTTATT---GTT----GTCATTGAC-TGCTTTACAACCTG-AAAAT---TG-TG---TCAGAGCCT-AAAATC--------A-C---TTGTGC-CACTAT-----TATTTGT---GATAAAT-ATT-GTT-----CGA-C-GCAATATCAGGTCGG-ACTAGCTCGTTAGAAAATGGGTGGTTCGGATgttaga
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCTCGCCGCTGAAAAAGCCAATTTTGGTACGGGTTGTTTAAAGGACATTCAAAGCTTTATCCTTGTAACAAATGTTTATCGCCAATCAAAACAATATTCAAA
Unaligned ( gi|18 ): CCATCGAAATGGCCGATTTTGATATGGGCTGTTTAAAGAACATTCAAAGCTCTATCATT
Unaligned ( gi|19 ): AGAGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGAGTA
Alignments
lowQualScore : 11 3333333333333333333333333333333333333333333333333 11111 1111 111 555555555555555555555555 111111 333333333333333 22222 1 1 333333333333 111 11111 3333333 2222222 111 111 11111111 1111 22222222222222222222222 11111 22222 111 1111 11
lowQualScore : 44 1 1 7 3 0 1 5 4 6666666666666666666666666666666666666666666666666 5 88 5 5 22222 0 5 2 1 2 0000 5 5 000 2 33 555555555555555555555555 5 5 1 0 666666 5 999 5 1 1 666666666666666 6 2 33333 4 99 1 3 5 99 444444444444 111 99 66666 6 99 5 5555555 77 6 6 99 3 7777777 5 000 5 77 1 44 11 88 4 0 333 88888888 4 4 4 2222 4 777 0 888 6 55555555555555555555555 11111 22222 2 8 444 8888 8 0000 4 4 0 4 1 33 66
lowQualScore : .. . . . . . . . . ................................................. . .. . . ..... . . . . . .... . . ... . .. ........................ . . . . ...... . ... . . . ............... . . ..... . .. . . . .. ............ ... .. ..... . .. . ....... .. . . .. . ....... . ... . .. . .. .. .. . . ... ........ . . . .... . ... . ... . ....................... ..... ..... . . ... .... . .... . . . . . .. ..
lowQualScore : 66 0 0 3 2 6 0 0 3 3333333333333333333333333333333333333333333333333 0 55 0 0 55555 2 0 5 4 5 6666 0 0 888 8 77 000000000000000000000000 7 7 7 7 444444 7 666 7 0 4 333333333333333 7 5 55555 2 22 0 2 5 22 222222222222 777 22 77777 7 22 7 0000000 99 7 7 22 5 3333333 7 000 7 00 4 44 00 44 4 8 999 00000000 0 9 0 5555 4 888 8 666 7 44444444444444444444444 11111 55555 4 0 777 5555 2 9999 0 0 7 4 9 88 99
consensus : ATTCATTCGAAGACGCACCTTTAAAACAAAGCTATTNT-GCCACACTAAGGATTAATC-----CA-TA-A---AT----TTCTAA--AATC-GAGAACGGA-CG---AAC-AGATGATTGAGGTG-AA-G-----GTCGTTTACTAAAATTTC-GGAACGGCATTGAGAT----GTTTTGA-CAAAACG-AAATT--AATNCTGCCNGTA------------------------CTATACA-TATGCA-TGTCCGCATAATACGTAA------TTTCATG-GGT--GTAGGAAA-GGTGTAAATTA------TAAT---CGAAAAA-AGAACTTTAGGTTTGTG-TT-TAAAT-AAAGT-GTCATACTGGTTTATTCCTTTTCAAAACGAAC--TGATGA------------TGCAATATT---TTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATAA--TTAT-GACGTGAAATAAAAACAAATTCTGGT-------TA--AATGTTTAAACGA-TG--ATGTATT----TGTGATTAATGA-ACACTG---AT-G-AATACGGATTAAAG-TGGA-TTTATT---GTTC---GCCGTTGAC-TGCTTTACCNCCTG-AAAA----T-ATG---TAAGTGCCTGAAAATC--------A-C---TTGT-T-TACTAT-----TATTTTC---GCTNAAA-ATNCGTT----CCGACC-GAAAT-TCA-GTCGGAACTAGCTCGTTANAAAATGG--GGTTCGGAT
Reference ( family-142 ) : ATTCATTCGAAGACGCACCTTTAAAACAAAGCTATTNT-GCCACACTAAGGATTAATT-----CA-TANA---AT----TTCTAA--AATC-GAGAACGGA-CG---AAC-AGATGATTGAGGTG-AA-G-----GTCGTTTACTAAAATTTC-GGAACGGCATTGAGAT----GTTTTGA-CAAAACG-AAATT--AATNCTGCCNGTA------------------------CTATACA-TATGCA-TGTCCGCATAATACGTAA------TTTCATG-GGT--GTAGGAAA-GGTGTAAATTA------TAAT---CGAAAAA-AGAACTTTAGGTTTGTG-TT-TAAATTAAAGT-GTCATACTGGTTTATTCCTTTTCAAAACGAAC--TGATGA------------TGCAATATT---TTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATAA--TTAT-GACGTGAAATAAAAACAAATTCTGGT-------TA--AATGTTTAAACGA-TG--ATGTATT----TGTGATTAATGA-ACACTG---AT-G-AATACGGATTAAAG-TGGA-TTTATT---GTTC---GCCGTTGAC-TGCTTTACCNCCTG-AAAA----T-ATG---TAAGTGCCTGAAAATC--------A-C---TTGT-T-TACTAT-----TATTTTC---GCTNAAA-ATNCGTT----CCGACC-GAAAT-TCA-GTCGGAACTAGCTCGTTANAAAATGG--GGTTCGGAT
gi|1 : CGCACTTT-------AAGCCATGAT-GCCACACTAAGGATTAATC-----AA-TA-A---AT----TT--AA--AATC-GA-AGTAGA-C----AAC-AAATGAAGAAGGTG-GA-G-----GTCGTTTCCTAAAACTTT-GCAAAGACATTGA--------TTTTGA-CAAAACG-AAATT--GATACTGTCAGCA------------------------CTATGAA-TATGCA-TA-----AT--TACGTAA------TTTCATG-GGT--GTAGGAAA-GGTGTAAATTA------TAAT---TGAAAAA-AGAACTGTATTTTAGTA-AG-TAAATAAAAG-------ACT---------CCTTTAAAAATAAAC--TGATGA------------ATCAATATT---TTCGTTTCCCGAAAA--AA-----G-ACTTGCAAAACAA--TTAT-GACGTGAAA
gi|1 : aatcctcactgctgaaaaggccacttttgatatggattatttaaagaacgttcaaagctttatcagtaattaatggtcatcaccaaacaataatA-TTTATT---GTTC---GCCATTGAC-TGCTGTACTTCCTG-AAAA----T-ATG---TAAATGTCTGAGAATCACTACAATA-C---TTGT-TCTATTACATTTGTATTTTC---TCTCAAA-ATATGCT----CCAATT-AAAAT-TCA-GTCGGAACTAGCTCGTTA-AAAGTGG--GTTTGGGATatttattgttcgccattgactgctgtacttcctgaaaatatgtaaatgtctgagaatcactacaatacttgttctattacatttgtattttctctcaaaatatgctccaattaaaattcagtcggaactagctcgttaaaagtgggtttgggatgtttgagtatgaggtttatgtaaggaacattaaccaaggctctaaattgttggagcaggacgcg
gi|10 : aatcctcactgctgaaaaggccacttttgatatggattatttaaagaacgttcaaagctttatcagtaattaatggtcatcaccaaacaataatcgcactttaagccatgatgccacactaaggattaatcaataaatttaaaatcgaagtagacaacaaatgaagaaggtggaggtcgtttcctaaaactttgcaaagacattgattttgacaaaacgaaattgatactgtcagcactatgaatatgcataattacgtaatttcatgggtgtaggaaaggtgtaaattataattgaaaaaagaactgtattttagtaagtaaataaaagactcctttaaaaataaactgatgaatcaatattttcgtttcccgaaaaaagacttgcaaaacaattatgacgtgaaaACATAGTTGCTCT-GCCACACTAAGGATTAATT-----TA-TACATGTAA----TTCTAA--AATC-GA--ACTGA-TC---AAC-TAGTGATTAAGGCG-AA-G-----GTCATTTACTAAAATTTC-GGAACGGAATTCACAT----GTATTGA-CAAAACG-AAATT--AATCCTGCCGGTA------------------------CTATgtttgagtatgaggtttatgtaaggaacattaaccaaggctctaaattgttggagcaggacgcg
gi|11 : ATTCATT--AAAACGCACCTT-AAAACATAGCTATTAT-GCCACACTAAGGgtaaa
gi|12 : tctcgccgctgaaaaagtcaattttgatatgggttgtttaaaagaagcattcaaagatttatcttaacaaatgttatcaacaatcaaataatcagtCACTC--AGACATACCTCTAAAACAAAGTGATTAT-GCCATA
gi|13 : tctccgctgaaaaaaccaattttggtatgggttgtttaaagagcattcaaagctttataatgaacaaatggtcatcaccaatcaaatattcgttatttaTCAAAGATGGA-TTTATT---GTTA---TGCGTTGAC-TGC-TTACCACTAG-TAAA----TAATG---TGAGT--CTGAAAA-C--------ATC---TTGT-T-GGCTAT-----TAATTTT---ACTCAAATATGC-TT----CCGATG-AAAAT-TCA-GT-GGAACa
gi|14 : TCT-GCCACACTAAG-ATTAATTATATACA-TGTA---AC----TTCTAA--AATC-GA--ACGGATCA---AAC-TAGTGAT-AAGGCG-AAAG-----GTCATTTACTAAAATTTC-GGAACGGAATTCACAT----G-TTTGA-CAATACGAAAATT--AATCCTGCaaacagttgaccaaaat
gi|15 : cC-TGCTTCACCTTCTT-AAAA----T-ACAAAATAAGCACCT-AAAATA--------A-CATTTTTT-T-TACTAT-----CATTT--------AAAATATACGTTATGTTCAACCCGAAAT-TCC-GTCGGAACTGACACGTT-GAAAATGA--GGTTTGGAT
gi|17 : TTTT---GCTGAAA-ATCC-TT----CCTACC--AAAT-TTA-GTTGGAACGAGTTCCTTGAAAAATGG--TGTTCGtgtta
gi|2 : ATT-----CACTGAA---ATATTTTTTTAA--ATTTTAAGAACGAA-TGGAAAAC-AGATGATTGAGATGGAA-G-----GTCTTTTATTAAAATTTT-GAACCGGCATTGAGATTGTTATTTTGAACAAAAAG-AAATTGGAGTACTGCCAGTACTATACCGATATAGCATGTAACAACTGTACACTATGCAGTATCCG-ATAATACGTAACTGTGATTTTATG-GGTTTGTAAAAAATAATG--AATTACTTCAGTCATTTACGAAAAA-CGAACTTTAGGATTGTGATTGTAAAT-AAAGT-GTTATACTGATT-ATTTCCTT-CAAAACGAACCTTAATGAGTCCTCTGTGGATGCTATGTTAATTTCGTTTTCTTGAAACCAC-----G-ATCTGCAAAAAAAATCTATTGACGTGAAATAAAAACAAACGCTGAT-------TA--AATGTTTAAACAATTGATATGTAAT----TGAAGATAATGAGGCA-TGTCAAT-G-CATATGAAT--AAA-TGGA-CC--TT---GTTCAGAGCC-TTGA--TG--TTACTCCCTG-AAGA----
gi|3 : ttcgccgctgaaaaggacctattttgatatcgggttatttttaaatagaactttcaaagctttatcattagcacaacttggttatacaccaatcaaataatcaatATTCATTCAAAGATGCACCTTTAAAATAGAGCTGTTTT-GGCACACTAAGCATTAATC-----CA-TA-----AT----TTCAAA--AAC----GAATTGC-TA---AAC-GGATGATTGAGGTA-AA-G-----GTCGATTATCAAAGGTTT-GGAACGACATTGAGAT----GTTTTGA-CAAAGCG-AAATT--CATACTGCTAGTA------------------------CTATACA-TATGCA-TGTCCGCATAGTACGTTA------TTGCATA-TGT--ATAAGNNN-NNNATACATc
gi|3 : tcacaaatcaaataatcgttATACA-TATGCA-TGTCCGCATAGTACGTTA------TTTCATA-TGT--ATAAGAAA-G-------CTA------TAAT-----------------TTA---------TT-CAAAACAAAAT--------TGGTTTATTCCTTT-CAAAACGAAA--TGATGA------------TGTAATATT---TTCGTTTACTGAAAA--AC-----G-ATCCGCAAAATAA--TTAT-GACGTGAAATAAAAACAAAGTCTGGT-------TA--AATGTTTAGACGA-TG--ATGTA------TGTGATTGATGA-GAACTG---AT-GCAATATGGATTAAAA-TGGA-TTTATT---GTTT---GTCATTGAC-TGCTTTATCATATG-AAAA----T-ATG---TAAGTG-CTGAAAATA--------A-C---TTGT-T-GACTAT-----TATTTTC----------------TT----CCTA----AAAT-TCA-GTCACAACTAGCTCATTAatgcatgtccgcatagtacgttatttcatatgtataagaaagctataatttattcaaaacaaaattggtttattcctttcaaaacgaaatgatgatgtaatattttcgtttactgaaaaacgatccgcaaaataattatgacgtgaaataaaaacaaagtctggttaaatgtttagacgatgatgtatgtgattgatgagaactgatgcaatatggattaaaatggatttattgtttgtcattgactgctttatcatatgaaaatatgtaagtgctgaaaataacttgttgactattattttcttcctaaaattcagtcacaactagctcattagcccgaggtatataagggacgttaacat
gi|4 : tcacaaatcaaataatcgttattcattcaaagatgcacctttaaaatagagctgttttggcacactaagcattaatccataatttcaaaaacgaattgctaaacggatgattgaggtaaaggtcgattatcaaaggtttggaacgacattgagatgttttgacaaagcgaaattcatactgctagtactatacatatgcatgtccgcatagtacgttattgcatatgtataagnnnnnnATTCATTTGAAGA-GCATATTTCA--TAAAACTACCGGAGGGACA--GAGTGTTATTT-----AC-CAGA---ATG---TTCCACTTAACG-GAGAATGAA-TG---AAC-AGATGATTCAGGTG-AA-G-----GTAGTTTACTAAAATTTC-GGAATGGAATTCAGGT----GTTTTGA-CAAAACG-AAATT--AATTTTGCCCGTA------------------------CTATACA-GGTACA-TGTCCGCATAATACGTAA------TTTCATG-GGT--GTAGGAAA-AGTGTAAATTA------TAAT---TAAAAAA-AGAACTCCAGGTTTGTG-TT-TAATTTAAAGT-GTCATATTGGTTTATTCCTTTTCAAAACGAAC--TGATGA------------TGAAATATA---TTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATTT--TTAT-GATGTGAAATAAAAACAAATTCAGGT-------TA--AATGTTTAAACGA-TG--ATGTATTTGTCTGTGATTAATTT-ACACTG---AT-G-CATATGTATTAAAG-TGGA-TTTATT---GCTT---GCCATTGAC-TGCTTTAACACCTG-AAAA----T-GTG---TAAGTGCTTGAAAATC--------A-C---TTGT-T-TAATAT-----CATTTTC---ACTCAAA-ATTCGTT----CCGACC-AAAAT-TCA-ATCGGAACTAGCTCGTTAAAAAATGG--GGTTCGGGTgcccgaggtatataagggacgttaacat
gi|5 : GGA-CA---AA--AGATGATTGAGGTG-AA-G-----GTCGTTTACTAAAAT---------------AAGGT----GTTTTGA-CAAAACG-AAATT--GAATCTGCCT-TA------------------------TTATACA-TATGAA-TGTCCGCATAATACGTAA------TTCCATG-GGT--GTAGAAAA-AGTGTAAATTA------TAAT-----AAAAATAGAACTTCAGGTTTGT------AAATTAAAGT-GTCATACTGGTTTATTCCTTTTCAAAACGAAC--TGATGA------------TGCAATATA---TTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATAG--TTAT-GATGTGAAATAATAACAAATTCCGAT-------TA--AATGTTTAAACGA-TG--ATGTATT------TGATTAATGA-ACACTG---AT-G-AATATGGATTAAA-----A-TTTGTC---A-----------TGAC-TGCTTTACC-CCTG-AAAA----T-GTG---T-AGTGCCTGAAA----------------------T-TACTAT-----TATTTTC---ACTCAAA-ATATGTT----CCGACC-AGAAT-TCA-GTCG----------------AAATGG--GGTTAGGAT
gi|6 : ttATTCATTCAAAGACGTACATTTAAAACAAAGTTCTTAT-GTCACACTTAGGATTAATC-----CA-TA-----AT----T---AA--AA----ATAA---A-CG---AATTAGAAAAC--AGGTG-AA-GTTTTGGTCGTTTA-TGAAACTTCTGGAACGGCAATGAGAT----TTTATGA-CAAAACG-AAATT--------GC-------------------------------ATGTA-TATGCA-TGACCGCATAATAAGTAA------GTTCATGAGGT---TGAGAAA-GGTATAAATTA------T------C---AGA-AGAACTTTGGGTTTATA-TG-TAAAT-AAAGTTGTCATACTGGTTTATTCCTTG-CAAAACGAAC--TGAAGA------------TACAATAGT---TTCGTTTTCTGAAAA--ACTACATGTATCTGCAAAATAA--TTAT-GACATGAAATAAAAACAAATTTTGGT-------CA--ACTGTTgttaga
gi|7 : aactctccgttgaaagggccaattgtatatgggtcttttaaagagtatttatcaatcactaatcaaataatcgttGTCAAACAGAAACAAATTCTGGTGATGGC-TA--TACATTTCAA-AA-TA--ATTTATT----TG--ATTAATGA-ACACTG---CT-G-AATACGGATC-AAG-TGGA-TTT-TTAC-GTTC---ACTGTTAAC-TGCTTTGTCTACTG-CAAA----T-ACG---TAAG-GTCTTAAAATT--------A-A---TT-------CTGT-----TTTCTTTAAAACTAAAA-ATGTGTT----CC-ACT-GAAAT-TCA-GTTAAAACGAGTTATTTACAAAATGA--GGCTCGGAT
gi|8 : -GAGGTCAAACCGAAACAAATTCTGGTGATCGGCTATTAATTTCCAAA--A-TA--ATTTATT-------GATTAATGA-ACACTG---CT-G-AATACG---TA----TGGA-TTTATTTACGTTC---A-TGTTAACTTGCTTTGTCTACTGCAAAAGTCGC-ATA----AAGT--CTTAAAATT--------A-A---TT-------CTGT-----TTTCTTTAAAACTAAAA-ATT--TT----CC-ACT-GAAAT-TCA-GTTAAAAC--GATTATT-TACAATGA--GGCTCGGATgttaga
gi|9 : AATGA-ACAC-G---ATTG-CAT-TGG-TTAAAG-TGGAATTTATT---GTT----GTCATTGAC-TGCTTTACAACCTG-AAAAT---T-GTG---TCAGAGCCT-AAAATC--------A-C---TTGTGC-CACTAT-----TATTTGT---GATAAAT-ATT-GTT-----CGA-C-GCAATATCAGGTCGG-ACTAGCTCGTTAGAAAATGGGTGGTTCGGATgttaga
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCTCGCCGCTGAAAAAGCCAATTTTGGTACGGGTTGTTTAAAGGACATTCAAAGCTTTATCCTTGTAACAAATGTTTATCGCCAATCAAAACAATATTCAAA
Unaligned ( gi|18 ): CCATCGAAATGGCCGATTTTGATATGGGCTGTTTAAAGAACATTCAAAGCTCTATCATT
Unaligned ( gi|19 ): AGAGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGAGTA
Alignments
lowQualScore : 11 22222222 22222222 22222222222222 11111 111111 555555555555555555555555 111111 111111 33333 33333 333333333333 111 11111 3333333 2222222 111 111 11111111 1111 22222222222222222222222 11111 22222 111 1111 11
lowQualScore : 44 1 1 7 3 0 1 5 4 11111111 11111111 66 77 99999999999999 5 88 5 77777 0 5 2 1 000000 5 5 777 2 33 77 5 444444444444444444444444 0 666666 5 77 1 5 1 1 999999 33333 6 2 11111 6 6 77 2 1 3 9 3 99 444444444444 111 99 66666 6 99 6 5555555 77 6 6 99 3 7777777 5 000 5 77 1 44 11 88 4 0 333 88888888 4 4 4 2222 4 777 0 888 6 55555555555555555555555 11111 22222 2 8 444 8888 8 0000 4 4 0 4 1 33 66
lowQualScore : .. . . . . . . . . ........ ........ .. .. .............. . .. . ..... . . . . ...... . . ... . .. .. . ........................ . ...... . .. . . . . ...... ..... . . ..... . . .. . . . . . .. ............ ... .. ..... . .. . ....... .. . . .. . ....... . ... . .. . .. .. .. . . ... ........ . . . .... . ... . ... . ....................... ..... ..... . . ... .... . .... . . . . . .. ..
lowQualScore : 66 0 0 3 2 6 0 0 3 22222222 00000000 99 99 88888888888888 0 55 0 55555 2 0 5 4 999999 0 0 666 8 77 99 7 666666666666666666666666 7 444444 7 99 7 7 0 4 222222 00000 7 5 55555 7 7 77 5 0 2 8 2 22 222222222222 777 22 77777 7 22 7 0000000 99 7 7 22 5 3333333 7 000 7 00 4 44 00 44 4 8 999 00000000 0 9 0 5555 4 888 8 666 7 44444444444444444444444 11111 55555 4 0 777 5555 2 9999 0 0 7 4 9 88 99
consensus : ATTCATTCGAAGACGCACCTTTAAAACAAAGCTATTNT-GCCACACTAAGGATTAAT--C-----CATA-AAT----TTCTAA--AATCGA-AACGGA-CGAA-CAGATGATTGAGGTG-AA-----GGTCGTTTACTAAAATTTC-GGAACGGCATTGAGA----TGTTTTG-ACAAAACG-AAATT--AATNCTGCCNGTACTATAC--ATAT-GCATG-----------------------TCCGCATAATACGTA------ATTTCATG-GG--TGTAGGAAA-GGTGTAAATTA------TAAT---CGAAAAA-AGAACTTTAGGTTTGTG-T--TAA-AT-AAAG-TGTCATACTGGTTTATTCCTTTTCAAAACGAAC--TGAT------------GATGCAATAT---TTTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATAA--TTA-TGACGTGAAATAAAAACAAATTCTGGT-------TA--AATGTTTAAACGA-TG--ATGTATT----TGTGATTAATGA-ACACTG---AT-G-AATACGGATTAAAG-TGGA-TTTATT---GTTC---GCCGTTGAC-TGCTTTACCNCCTG-AAAA----T-ATG---TAAGTGCCTGAAAATC--------A-C---TTGT-T-TACTAT-----TATTTTC---GCTNAAA-ATNCGTT----CCGACC-GAAAT-TCA-GTCGGAACTAGCTCGTTANAAAATGG--GGTTCGGAT
Reference ( family-142 ) : ATTCATTCGAAGACGCACCTTTAAAACAAAGCTATTNT-GCCACACTAAGGATTAAT--C-----CATA-AAT----TTCTAA--AATCGAGAACGGA-CGAA-CAGATGATTGAGGTG-AA-----GGTCGTTTACTAAAATTTC-GGAACGGCATTGAGA----TGTTTTG-ACAAAACG-AAATT--AATNCTGCCNGTACTATAC--ATAT-GCATG-----------------------TCCGCATAATACGTA------ATTTCATG-GG--TGTAGGAAA-GGTGTAAATTA------TAAT---CGAAAAA-AGAACTTTAGGTTTGTG-TT-TAA-AT-AAAG-TGTCATACTGGTTTATTCCTTTTCAAAACGAAC--TGAT------------GATGCAATAT---TTTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATAA--TTA-TGACGTGAAATAAAAACAAATTCTGGT-------TA--AATGTTTAAACGA-TG--ATGTATT----TGTGATTAATGA-ACACTG---AT-G-AATACGGATTAAAG-TGGA-TTTATT---GTTC---GCCGTTGAC-TGCTTTACCNCCTG-AAAA----T-ATG---TAAGTGCCTGAAAATC--------A-C---TTGT-T-TACTAT-----TATTTTC---GCTNAAA-ATNCGTT----CCGACC-GAAAT-TCA-GTCGGAACTAGCTCGTTANAAAATGG--GGTTCGGAT
gi|1 : CGCACTTT-------AAGCCATGAT-GCCACACTAAGGATTAAT--C-----AATA-AAT----TT--AA--AATCGA-AGTAGA-C-AA-CAAATGAAGAAGGTG-GA-----GGTCGTTTCCTAAAACTTT-GCAAAGACATTGA--------TTTTG-ACAAAACG-AAATT--GATACTGTCAGCACTATGA--ATAT-GCATA----------------------------AT--TACGTA------ATTTCATG-GG--TGTAGGAAA-GGTGTAAATTA------TAAT---TGAAAAA-AGAACTGTATTTTAGTA-AG-TAA-AT-AAA------AGACT---------CCTTTAAAAATAAAC--TGAT------------GAATCAATAT---TTTCGTTTCCCGAAAA--AA-----G-ACTTGCAAAACAA--TTA-TGACGTGAAA
gi|1 : aatcctcactgctgaaaaggccacttttgatatggattatttaaagaacgttcaaagctttatcagtaattaatggtcatcaccaaacaataatA-TTTATT---GTTC---GCCATTGAC-TGCTGTACTTCCTG-AAAA----T-ATG---TAAATGTCTGAGAATCACTACAATA-C---TTGT-TCTATTACATTTGTATTTTC---TCTCAAA-ATATGCT----CCAATT-AAAAT-TCA-GTCGGAACTAGCTCGTTA-AAAGTGG--GTTTGGGATatttattgttcgccattgactgctgtacttcctgaaaatatgtaaatgtctgagaatcactacaatacttgttctattacatttgtattttctctcaaaatatgctccaattaaaattcagtcggaactagctcgttaaaagtgggtttgggatgtttgagtatgaggtttatgtaaggaacattaaccaaggctctaaattgttggagcaggacgcg
gi|10 : aatcctcactgctgaaaaggccacttttgatatggattatttaaagaacgttcaaagctttatcagtaattaatggtcatcaccaaacaataatcgcactttaagccatgatgccacactaaggattaatcaataaatttaaaatcgaagtagacaacaaatgaagaaggtggaggtcgtttcctaaaactttgcaaagacattgattttgacaaaacgaaattgatactgtcagcactatgaatatgcataattacgtaatttcatgggtgtaggaaaggtgtaaattataattgaaaaaagaactgtattttagtaagtaaataaaagactcctttaaaaataaactgatgaatcaatattttcgtttcccgaaaaaagacttgcaaaacaattatgacgtgaaaACATAGTTGCTCT-GCCACACTAAGGATTAAT--T-----TATA-CATGTAATTCTAA--AATCGA--ACTGA-TCAA-CTAGTGATTAAGGCG-AA-----GGTCATTTACTAAAATTTC-GGAACGGAATTCACA----TGTATTG-ACAAAACG-AAATT--AATCCTGCCGGTACTATgtttgagtatgaggtttatgtaaggaacattaaccaaggctctaaattgttggagcaggacgcg
gi|11 : ATTCATT--AAAACGCACCTT-AAAACATAGCTATTAT-GCCACACTAAGGgtaaa
gi|12 : tctcgccgctgaaaaagtcaattttgatatgggttgtttaaaagaagcattcaaagatttatcttaacaaatgttatcaacaatcaaataatcagtCACTC--AGACATACCTCTAAAACAAAGTGATTAT-GCCATA
gi|13 : tctccgctgaaaaaaccaattttggtatgggttgtttaaagagcattcaaagctttataatgaacaaatggtcatcaccaatcaaatattcgttatttaTCAAAGATGGA-TTTATT---GTTA---TGCGTTGAC-TGC-TTACCACTAG-TAAA----TAATG---TGAGT--CTGAAAA-C--------ATC---TTGT-T-GGCTAT-----TAATTTT---ACTCAAATATGC-TT----CCGATG-AAAAT-TCA-GT-GGAACa
gi|14 : TCT-GCCACACTAAG-ATTAAT--TATATACATGTAAC----TTCTAA--AATCGA--ACGGATCAAA-CTAGTGAT-AAGGCG-AAA----GGTCATTTACTAAAATTTC-GGAACGGAATTCACA----TG-TTTG-ACAATACGAAAATT--AATCCTGCaaacagttgaccaaaat
gi|15 : cC-TGCTTCACCTTCTT-AAAA----T-ACAAAATAAGCACCT-AAAATA--------A-CATTTTTT-T-TACTAT-----CATTT--------AAAATATACGTTATGTTCAACCCGAAAT-TCC-GTCGGAACTGACACGTT-GAAAATGA--GGTTTGGAT
gi|17 : TTTT---GCTGAAA-ATCC-TT----CCTACC--AAAT-TTA-GTTGGAACGAGTTCCTTGAAAAATGG--TGTTCGtgtta
gi|2 : TA-AAT----TT-TAA--GAACGA--ATGGA--AAA-CAGATGATTGAGATGGAA-----GGTCTTTTATTAAAATTTT-GAACCGGCATTGAGATTGTTATTTTGAACAAAAAG-AAATTGGAGTACTGCCAGTACTATACCGATATAGCATGTAACAACTGTACACTATGCAGTATCCG-ATAATACGTAACTGTGATTTTATG-GGTTTGTAAAAAATAATG--AATTACTTCAGTCATTTACGAAAAA-CGAACTTTAGGATTGTGATTGTAA-AT-AAAG-TGTTATACTGA-TTATTTC-CTTCAAAACGAACCTTAATGAGTCCTCTGTGGATGCTATGTTAATTTCGTTTTCTTGAAACCAC-----G-ATCTGCAAAAAAAATCTATTGACGTGAAATAAAAACAAACGCTGAT-------TA--AATGTTTAAACAATTGATATGTAAT----TGAAGATAATGAGGCA-TGTCAAT-G-CATATGAAT--AAA-TGGA-CC--TT---GTTCAGAGCC-TTGA--TG--TTACTCCCTG-AAGA----
gi|3 : ttcgccgctgaaaaggacctattttgatatcgggttatttttaaatagaactttcaaagctttatcattagcacaacttggttatacaccaatcaaataatcaatattcactgaaatattttttATTCATTCAAAGATGCACCTTTAAAATAGAGCTGTTTT-GGCACACTAAGCATTAAT--C-----CATA-A-T----TTCAAA--AAC---GAATTGC-TAAA-CGGATGATTGAGGTA-AA-----GGTCGATTATCAAAGGTTT-GGAACGACATTGAGA----TGTTTTG-ACAAAGCG-AAATT--CATACTGCTAGTACTATAC--ATAT-GCATG-----------------------TCCGCATAGTACGTT------ATTGCATA-TG--TATAAGNNN-NNNATACATc
gi|3 : tcacaaatcaaataatcgttATAC--ATAT-GCATG-----------------------TCCGCATAGTACGTT------ATTTCATA-TG--TATAAGAAA-G-------CTA------TAAT-----------------TTA--TTCA-------AA-AC-AAAA-T-------TGGTTTATTCCTTT-CAAAACGAAA--TGAT------------GATGTAATAT---TTTCGTTTACTGAAAA--AC-----G-ATCCGCAAAATAA--TTA-TGACGTGAAATAAAAACAAAGTCTGGT-------TA--AATGTTTAGACGA-TG--ATGTA------TGTGATTGATGA-GAACTG---AT-GCAATATGGATTAAAA-TGGA-TTTATT---GTTT---GTCATTGAC-TGCTTTATCATATG-AAAA----T-ATG---TAAGTG-CTGAAAATA--------A-C---TTGT-T-GACTAT-----TATTTTC----------------TT----CCTA----AAAT-TCA-GTCACAACTAGCTCATTAatgcatgtccgcatagtacgttatttcatatgtataagaaagctataatttattcaaaacaaaattggtttattcctttcaaaacgaaatgatgatgtaatattttcgtttactgaaaaacgatccgcaaaataattatgacgtgaaataaaaacaaagtctggttaaatgtttagacgatgatgtatgtgattgatgagaactgatgcaatatggattaaaatggatttattgtttgtcattgactgctttatcatatgaaaatatgtaagtgctgaaaataacttgttgactattattttcttcctaaaattcagtcacaactagctcattagcccgaggtatataagggacgttaacat
gi|4 : tcacaaatcaaataatcgttattcattcaaagatgcacctttaaaatagagctgttttggcacactaagcattaatccataatttcaaaaacgaattgctaaacggatgattgaggtaaaggtcgattatcaaaggtttggaacgacattgagatgttttgacaaagcgaaattcatactgctagtactatacatatgcatgtccgcatagtacgttattgcatatgtataagnnnnnnATTCATTTGAAGA-GCATATTTCA--TAAAACTACCGGAGGGACA--GAGTGTTATTTAC-----CAGA-ATG----TTCCACTTAACGGAGAATGAA-TGAA-CAGATGATTCAGGTG-AA-----GGTAGTTTACTAAAATTTC-GGAATGGAATTCAGG----TGTTTTG-ACAAAACG-AAATT--AATTTTGCCCGTACTATAC--AGGT-ACATG-----------------------TCCGCATAATACGTA------ATTTCATG-GG--TGTAGGAAA-AGTGTAAATTA------TAAT---TAAAAAA-AGAACTCCAGGTTTGTG-TT-TAATTT-AAAG-TGTCATATTGGTTTATTCCTTTTCAAAACGAAC--TGAT------------GATGAAATAT---ATTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATTT--TTA-TGATGTGAAATAAAAACAAATTCAGGT-------TA--AATGTTTAAACGA-TG--ATGTATTTGTCTGTGATTAATTT-ACACTG---AT-G-CATATGTATTAAAG-TGGA-TTTATT---GCTT---GCCATTGAC-TGCTTTAACACCTG-AAAA----T-GTG---TAAGTGCTTGAAAATC--------A-C---TTGT-T-TAATAT-----CATTTTC---ACTCAAA-ATTCGTT----CCGACC-AAAAT-TCA-ATCGGAACTAGCTCGTTAAAAAATGG--GGTTCGGGTgcccgaggtatataagggacgttaacat
gi|5 : GGA-CAAA--AGATGATTGAGGTG-AA-----GGTCGTTTACTAAAAT---------------AAGG----TGTTTTG-ACAAAACG-AAATT--GAATCTGCCT-TATTATAC--ATAT-GAATG-----------------------TCCGCATAATACGTA------ATTCCATG-GG--TGTAGAAAA-AGTGTAAATTA------TAAT-----AAAAATAGAACTTCAGGTTTGT------AA-ATTAAAG-TGTCATACTGGTTTATTCCTTTTCAAAACGAAC--TGAT------------GATGCAATAT---ATTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATAG--TTA-TGATGTGAAATAATAACAAATTCCGAT-------TA--AATGTTTAAACGA-TG--ATGTATT------TGATTAATGA-ACACTG---AT-G-AATATGGATTAAA-----A-TTTGTC---A-----------TGAC-TGCTTTACC-CCTG-AAAA----T-GTG---T-AGTGCCTGAAA----------------------T-TACTAT-----TATTTTC---ACTCAAA-ATATGTT----CCGACC-AGAAT-TCA-GTCG----------------AAATGG--GGTTAGGAT
gi|6 : ttATTCATTCAAAGACGTACATTTAAAACAAAGTTCTTAT-GTCACACTTAGGATTAAT--C-----CATA-A--------TTAA--AA---ATAA---A-CGAATTAGAAAAC--AGGTG-AAGTTTTGGTCGTTTA-TGAAACTTCTGGAACGGCAATGAGA----TTTTATG-ACAAAACG-AAAT--------TGC-------ATGT--ATAT-GCATG-----------------------ACCGCATAATAAGTA------AGTTCATGAGG--T-TGAGAAA-GGTATAAATT---------AT---C---AGA-AGAACTTTGGGTTTATA-TG-TAA-AT-AAAGTTGTCATACTGGTTTATTCC-TTGCAAAACGAAC--TGAA------------GATACAATAG---TTTCGTTTTCTGAAAA--ACTACATGTATCTGCAAAATAA--TTA-TGACATGAAATAAAAACAAATTTTGGT-------CA--ACTGTTgttaga
gi|7 : aactctccgttgaaagggccaattgtatatgggtcttttaaagagtatttatcaatcactaatcaaataatcgttGTCAAACAGAAACAAATTCTGGTGATGGC-TA--TACATTTCAA-AA-TA--ATTTATT----TG--ATTAATGA-ACACTG---CT-G-AATACGGATC-AAG-TGGA-TTT-TTAC-GTTC---ACTGTTAAC-TGCTTTGTCTACTG-CAAA----T-ACG---TAAG-GTCTTAAAATT--------A-A---TT-------CTGT-----TTTCTTTAAAACTAAAA-ATGTGTT----CC-ACT-GAAAT-TCA-GTTAAAACGAGTTATTTACAAAATGA--GGCTCGGAT
gi|8 : GAGGTCAAACCGAAACAAATTCTGGTGATCGGCTATTAATTTCCAAA--A-TA--ATTTATT-------GATTAATGA-ACACTG---CT-G-AATACG---TA----TGGA-TTTATTTACGTTC---A-TGTTAACTTGCTTTGTCTACTGCAAAAGTCGC-ATA----AAGT--CTTAAAATT--------A-A---TT-------CTGT-----TTTCTTTAAAACTAAAA-ATT--TT----CC-ACT-GAAAT-TCA-GTTAAAAC--GATTATT-TACAATGA--GGCTCGGATgttaga
gi|9 : AATGA-ACAC-G---ATTG-CAT-TGG-TTAAAG-TGGAATTTATT---GTT----GTCATTGAC-TGCTTTACAACCTG-AAAAT---T-GTG---TCAGAGCCT-AAAATC--------A-C---TTGTGC-CACTAT-----TATTTGT---GATAAAT-ATT-GTT-----CGA-C-GCAATATCAGGTCGG-ACTAGCTCGTTAGAAAATGGGTGGTTCGGATgttaga
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCTCGCCGCTGAAAAAGCCAATTTTGGTACGGGTTGTTTAAAGGACATTCAAAGCTTTATCCTTGTAACAAATGTTTATCGCCAATCAAAACAATATTCAAA
Unaligned ( gi|18 ): CCATCGAAATGGCCGATTTTGATATGGGCTGTTTAAAGAACATTCAAAGCTCTATCATT
Unaligned ( gi|19 ): AGAGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGAGTA
Alignments
lowQualScore : 11 22222222 22222222 11 1 222 1 11111 111111 555555555555555555555555 111111 111111 33333 4444444 333333333333 111 11111 3333333 2222222 111 111 11111111 1111 22222222222222222222222 11111 22222 111 1111 11
lowQualScore : 44 1 1 7 3 0 1 5 4 11111111 11111111 00 77 44 5 4 222 444 0 22222 0 5 2 1 000000 5 5 777 2 33 77 5 444444444444444444444444 0 666666 5 77 1 5 1 1 999999 33333 6 6 1111111 9999 77 2 1 3 9 3 99 444444444444 111 99 66666 6 99 6 5555555 77 6 6 99 3 7777777 5 000 5 77 1 44 11 88 4 0 333 88888888 4 4 4 2222 4 777 0 888 6 55555555555555555555555 11111 22222 2 8 444 8888 8 0000 4 4 0 4 1 33 66
lowQualScore : .. . . . . . . . . ........ ........ .. .. .. . . ... ... . ..... . . . . ...... . . ... . .. .. . ........................ . ...... . .. . . . . ...... ..... . . ....... .... .. . . . . . .. ............ ... .. ..... . .. . ....... .. . . .. . ....... . ... . .. . .. .. .. . . ... ........ . . . .... . ... . ... . ....................... ..... ..... . . ... .... . .... . . . . . .. ..
lowQualScore : 66 0 0 3 2 6 0 0 3 22222222 00000000 66 99 66 7 1 999 666 0 55555 2 0 5 4 999999 0 0 666 8 77 99 7 666666666666666666666666 7 444444 7 99 7 7 0 4 222222 00000 7 7 8888888 3333 77 5 0 2 8 2 22 222222222222 777 22 77777 7 22 7 0000000 99 7 7 22 5 3333333 7 000 7 00 4 44 00 44 4 8 999 00000000 0 9 0 5555 4 888 8 666 7 44444444444444444444444 11111 55555 4 0 777 5555 2 9999 0 0 7 4 9 88 99
consensus : ATTCATTCGAAGACGCACCTTTAAAACAAAGCTATTNT-GCCACACTAAGGATTAAT--C-----CATA-AAT----TTCNAA--AATCGA-AACGGA-CAAACAGATGATTGAGGTG-AA-----GGTCGTTTACTAAAATTTC-GGAACGGCATTGAGA----TGTTTTG-ACAAAACG-AAATT--AATNCTGCCNGTACTATAC--ATAT-GCATG-----------------------TCCGCATAATACGTA------ATTTCATG-GG--TGTAGGAAA-GGTGTAAATTA------TAAT---CGAAAAA-AGAACTTTAGGTTTGTG-T---TAAA--T-AAAG-TGTCATACTGGTTTATTCCTTTTCAAAACGAAC--TGAT------------GATGCAATAT---TTTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATAA--TTA-TGACGTGAAATAAAAACAAATTCTGGT-------TA--AATGTTTAAACGA-TG--ATGTATT----TGTGATTAATGA-ACACTG---AT-G-AATACGGATTAAAG-TGGA-TTTATT---GTTC---GCCGTTGAC-TGCTTTACCNCCTG-AAAA----T-ATG---TAAGTGCCTGAAAATC--------A-C---TTGT-T-TACTAT-----TATTTTC---GCTNAAA-ATNCGTT----CCGACC-GAAAT-TCA-GTCGGAACTAGCTCGTTANAAAATGG--GGTTCGGAT
Reference ( family-142 ) : ATTCATTCGAAGACGCACCTTTAAAACAAAGCTATTNT-GCCACACTAAGGATTAAT--C-----CATA-AAT----TTCTAA--AATCGA-AACGGA-CGAACAGATGATTGAGGTG-AA-----GGTCGTTTACTAAAATTTC-GGAACGGCATTGAGA----TGTTTTG-ACAAAACG-AAATT--AATNCTGCCNGTACTATAC--ATAT-GCATG-----------------------TCCGCATAATACGTA------ATTTCATG-GG--TGTAGGAAA-GGTGTAAATTA------TAAT---CGAAAAA-AGAACTTTAGGTTTGTG-T---TAAA--T-AAAG-TGTCATACTGGTTTATTCCTTTTCAAAACGAAC--TGAT------------GATGCAATAT---TTTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATAA--TTA-TGACGTGAAATAAAAACAAATTCTGGT-------TA--AATGTTTAAACGA-TG--ATGTATT----TGTGATTAATGA-ACACTG---AT-G-AATACGGATTAAAG-TGGA-TTTATT---GTTC---GCCGTTGAC-TGCTTTACCNCCTG-AAAA----T-ATG---TAAGTGCCTGAAAATC--------A-C---TTGT-T-TACTAT-----TATTTTC---GCTNAAA-ATNCGTT----CCGACC-GAAAT-TCA-GTCGGAACTAGCTCGTTANAAAATGG--GGTTCGGAT
gi|1 : CGCACTTT-------AAGCCATGAT-GCCACACTAAGGATTAAT--C-----AATA-AAT----TT--AA--AATCGA-AGTAGA-C-AACAAATGAAGAAGGTG-GA-----GGTCGTTTCCTAAAACTTT-GCAAAGACATTGA--------TTTTG-ACAAAACG-AAATT--GATACTGTCAGCACTATGA--ATAT-GCATA----------------------------AT--TACGTA------ATTTCATG-GG--TGTAGGAAA-GGTGTAAATTA------TAAT---TGAAAAA-AGAACTGTA--TTTTAG-TAAGTAAA--T-AAA------AGACT---------CCTTTAAAAATAAAC--TGAT------------GAATCAATAT---TTTCGTTTCCCGAAAA--AA-----G-ACTTGCAAAACAA--TTA-TGACGTGAAA
gi|1 : aatcctcactgctgaaaaggccacttttgatatggattatttaaagaacgttcaaagctttatcagtaattaatggtcatcaccaaacaataatA-TTTATT---GTTC---GCCATTGAC-TGCTGTACTTCCTG-AAAA----T-ATG---TAAATGTCTGAGAATCACTACAATA-C---TTGT-TCTATTACATTTGTATTTTC---TCTCAAA-ATATGCT----CCAATT-AAAAT-TCA-GTCGGAACTAGCTCGTTA-AAAGTGG--GTTTGGGATatttattgttcgccattgactgctgtacttcctgaaaatatgtaaatgtctgagaatcactacaatacttgttctattacatttgtattttctctcaaaatatgctccaattaaaattcagtcggaactagctcgttaaaagtgggtttgggatgtttgagtatgaggtttatgtaaggaacattaaccaaggctctaaattgttggagcaggacgcg
gi|10 : aatcctcactgctgaaaaggccacttttgatatggattatttaaagaacgttcaaagctttatcagtaattaatggtcatcaccaaacaataatcgcactttaagccatgatgccacactaaggattaatcaataaatttaaaatcgaagtagacaacaaatgaagaaggtggaggtcgtttcctaaaactttgcaaagacattgattttgacaaaacgaaattgatactgtcagcactatgaatatgcataattacgtaatttcatgggtgtaggaaaggtgtaaattataattgaaaaaagaactgtattttagtaagtaaataaaagactcctttaaaaataaactgatgaatcaatattttcgtttcccgaaaaaagacttgcaaaacaattatgacgtgaaaACATAGTTGCTCT-GCCACACTAAGGATTAAT--T-----TATA-CATGTAATTCTAA--AATCGA-A-CTGA-TCAACTAGTGATTAAGGCG-AA-----GGTCATTTACTAAAATTTC-GGAACGGAATTCACA----TGTATTG-ACAAAACG-AAATT--AATCCTGCCGGTACTATgtttgagtatgaggtttatgtaaggaacattaaccaaggctctaaattgttggagcaggacgcg
gi|11 : ATTCATT--AAAACGCACCTT-AAAACATAGCTATTAT-GCCACACTAAGGgtaaa
gi|12 : tctcgccgctgaaaaagtcaattttgatatgggttgtttaaaagaagcattcaaagatttatcttaacaaatgttatcaacaatcaaataatcagtCACTC--AGACATACCTCTAAAACAAAGTGATTAT-GCCATA
gi|13 : tctccgctgaaaaaaccaattttggtatgggttgtttaaagagcattcaaagctttataatgaacaaatggtcatcaccaatcaaatattcgttatttaTCAAAGATGGA-TTTATT---GTTA---TGCGTTGAC-TGC-TTACCACTAG-TAAA----TAATG---TGAGT--CTGAAAA-C--------ATC---TTGT-T-GGCTAT-----TAATTTT---ACTCAAATATGC-TT----CCGATG-AAAAT-TCA-GT-GGAACa
gi|14 : TCT-GCCACACTAAG-ATTAAT--TATATACATGTAAC----TTCTAA--AATCG--AACGGATCAAACTAGTGA-TAAGGCGAAA-----GGTCATTTACTAAAATTTC-GGAACGGAATTCACA----TG-TTTG-ACAATACGAAAATT--AATCCTGCaaacagttgaccaaaat
gi|15 : cC-TGCTTCACCTTCTT-AAAA----T-ACAAAATAAGCACCT-AAAATA--------A-CATTTTTT-T-TACTAT-----CATTT--------AAAATATACGTTATGTTCAACCCGAAAT-TCC-GTCGGAACTGACACGTT-GAAAATGA--GGTTTGGAT
gi|17 : TTTT---GCTGAAA-ATCC-TT----CCTACC--AAAT-TTA-GTTGGAACGAGTTCCTTGAAAAATGG--TGTTCGtgtta
gi|2 : TA-AAT----TT-TAA--GAACGA-A-TGGA--AAACAGATGATTGAGATGGAA-----GGTCTTTTATTAAAATTTT-GAACCGGCATTGAGATTGTTATTTTGAACAAAAAG-AAATTGGAGTACTGCCAGTACTATACCGATATAGCATGTAACAACTGTACACTATGCAGTATCCG-ATAATACGTAACTGTGATTTTATG-GGTTTGTAAAAAATAATG--AATTACTTCAGTCATTTACGAAAAA-CGAACTTTAGGATTGTGATTG-TAAA--T-AAAG-TGTTATACTGA-TTATTTC-CTTCAAAACGAACCTTAATGAGTCCTCTGTGGATGCTATGTTAATTTCGTTTTCTTGAAACCAC-----G-ATCTGCAAAAAAAATCTATTGACGTGAAATAAAAACAAACGCTGAT-------TA--AATGTTTAAACAATTGATATGTAAT----TGAAGATAATGAGGCA-TGTCAAT-G-CATATGAAT--AAA-TGGA-CC--TT---GTTCAGAGCC-TTGA--TG--TTACTCCCTG-AAGA----
gi|3 : ttcgccgctgaaaaggacctattttgatatcgggttatttttaaatagaactttcaaagctttatcattagcacaacttggttatacaccaatcaaataatcaatattcactgaaatattttttATTCATTCAAAGATGCACCTTTAAAATAGAGCTGTTTT-GGCACACTAAGCATTAAT--C-----CATA-A-T----TTCAAA--AA-CGA-A-TTGC-TAAACGGATGATTGAGGTA-AA-----GGTCGATTATCAAAGGTTT-GGAACGACATTGAGA----TGTTTTG-ACAAAGCG-AAATT--CATACTGCTAGTACTATAC--ATAT-GCATG-----------------------TCCGCATAGTACGTT------ATTGCATA-TG--TATAAGNNN-NNNATACATc
gi|3 : tcacaaatcaaataatcgttATAC--ATAT-GCATG-----------------------TCCGCATAGTACGTT------ATTTCATA-TG--TATAAGAAA-G-------CTA------TAAT-----------------TTA--TTCA--------AAA--C-AAAA-T-------TGGTTTATTCCTTT-CAAAACGAAA--TGAT------------GATGTAATAT---TTTCGTTTACTGAAAA--AC-----G-ATCCGCAAAATAA--TTA-TGACGTGAAATAAAAACAAAGTCTGGT-------TA--AATGTTTAGACGA-TG--ATGTA------TGTGATTGATGA-GAACTG---AT-GCAATATGGATTAAAA-TGGA-TTTATT---GTTT---GTCATTGAC-TGCTTTATCATATG-AAAA----T-ATG---TAAGTG-CTGAAAATA--------A-C---TTGT-T-GACTAT-----TATTTTC----------------TT----CCTA----AAAT-TCA-GTCACAACTAGCTCATTAatgcatgtccgcatagtacgttatttcatatgtataagaaagctataatttattcaaaacaaaattggtttattcctttcaaaacgaaatgatgatgtaatattttcgtttactgaaaaacgatccgcaaaataattatgacgtgaaataaaaacaaagtctggttaaatgtttagacgatgatgtatgtgattgatgagaactgatgcaatatggattaaaatggatttattgtttgtcattgactgctttatcatatgaaaatatgtaagtgctgaaaataacttgttgactattattttcttcctaaaattcagtcacaactagctcattagcccgaggtatataagggacgttaacat
gi|4 : tcacaaatcaaataatcgttattcattcaaagatgcacctttaaaatagagctgttttggcacactaagcattaatccataatttcaaaaacgaattgctaaacggatgattgaggtaaaggtcgattatcaaaggtttggaacgacattgagatgttttgacaaagcgaaattcatactgctagtactatacatatgcatgtccgcatagtacgttattgcatatgtataagnnnnnnATTCATTTGAAGA-GCATATTTCA--TAAAACTACCGGAGGGACA--GAGTGTTATTTAC-----CAGA-ATG----TTCCACTTAACGGAGAATGAA-TGAACAGATGATTCAGGTG-AA-----GGTAGTTTACTAAAATTTC-GGAATGGAATTCAGG----TGTTTTG-ACAAAACG-AAATT--AATTTTGCCCGTACTATAC--AGGT-ACATG-----------------------TCCGCATAATACGTA------ATTTCATG-GG--TGTAGGAAA-AGTGTAAATTA------TAAT---TAAAAAA-AGAACTCCAGGTTTGTG-T---TTAATTT-AAAG-TGTCATATTGGTTTATTCCTTTTCAAAACGAAC--TGAT------------GATGAAATAT---ATTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATTT--TTA-TGATGTGAAATAAAAACAAATTCAGGT-------TA--AATGTTTAAACGA-TG--ATGTATTTGTCTGTGATTAATTT-ACACTG---AT-G-CATATGTATTAAAG-TGGA-TTTATT---GCTT---GCCATTGAC-TGCTTTAACACCTG-AAAA----T-GTG---TAAGTGCTTGAAAATC--------A-C---TTGT-T-TAATAT-----CATTTTC---ACTCAAA-ATTCGTT----CCGACC-AAAAT-TCA-ATCGGAACTAGCTCGTTAAAAAATGG--GGTTCGGGTgcccgaggtatataagggacgttaacat
gi|5 : GGA-CAAA-AGATGATTGAGGTG-AA-----GGTCGTTTACTAAAAT---------------AAGG----TGTTTTG-ACAAAACG-AAATT--GAATCTGCCT-TATTATAC--ATAT-GAATG-----------------------TCCGCATAATACGTA------ATTCCATG-GG--TGTAGAAAA-AGTGTAAATTA------TAAT-----AAAAATAGAACTTCAGGTTTGT-------AAA--TTAAAG-TGTCATACTGGTTTATTCCTTTTCAAAACGAAC--TGAT------------GATGCAATAT---ATTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATAG--TTA-TGATGTGAAATAATAACAAATTCCGAT-------TA--AATGTTTAAACGA-TG--ATGTATT------TGATTAATGA-ACACTG---AT-G-AATATGGATTAAA-----A-TTTGTC---A-----------TGAC-TGCTTTACC-CCTG-AAAA----T-GTG---T-AGTGCCTGAAA----------------------T-TACTAT-----TATTTTC---ACTCAAA-ATATGTT----CCGACC-AGAAT-TCA-GTCG----------------AAATGG--GGTTAGGAT
gi|6 : ttATTCATTCAAAGACGTACATTTAAAACAAAGTTCTTAT-GTCACACTTAGGATTAAT--C-----CATA-A-------TTAAA--AAT--A-AACGAA-T---TAGAAAAC--AGGTG-AAGTTTTGGTCGTTTA-TGAAACTTCTGGAACGGCAATGAGA----TTTTATG-ACAAAACG-AAAT--------TGC-------ATGT--ATAT-GCATG-----------------------ACCGCATAATAAGTA------AGTTCATGAGG--T-TGAGAAA-GGTATAAATT---------AT---C---AGA-AGAACTTTGGGTTTATA-TG--TAAA--T-AAAGTTGTCATACTGGTTTATTCC-TTGCAAAACGAAC--TGAA------------GATACAATAG---TTTCGTTTTCTGAAAA--ACTACATGTATCTGCAAAATAA--TTA-TGACATGAAATAAAAACAAATTTTGGT-------CA--ACTGTTgttaga
gi|7 : aactctccgttgaaagggccaattgtatatgggtcttttaaagagtatttatcaatcactaatcaaataatcgttGTCAAACAGAAACAAATTCTGGTGATGGC-TA--TACATTTCAA-AA-TA--ATTTATT----TG--ATTAATGA-ACACTG---CT-G-AATACGGATC-AAG-TGGA-TTT-TTAC-GTTC---ACTGTTAAC-TGCTTTGTCTACTG-CAAA----T-ACG---TAAG-GTCTTAAAATT--------A-A---TT-------CTGT-----TTTCTTTAAAACTAAAA-ATGTGTT----CC-ACT-GAAAT-TCA-GTTAAAACGAGTTATTTACAAAATGA--GGCTCGGAT
gi|8 : GAGGTCAAACCGAAACAAATTCTGGTGATCGGCTATTAATTTCCAAA--A-TA--ATTTATT-------GATTAATGA-ACACTG---CT-G-AATACG---TA----TGGA-TTTATTTACGTTC---A-TGTTAACTTGCTTTGTCTACTGCAAAAGTCGC-ATA----AAGT--CTTAAAATT--------A-A---TT-------CTGT-----TTTCTTTAAAACTAAAA-ATT--TT----CC-ACT-GAAAT-TCA-GTTAAAAC--GATTATT-TACAATGA--GGCTCGGATgttaga
gi|9 : AATGA-ACAC-G---ATTG-CAT-TGG-TTAAAG-TGGAATTTATT---GTT----GTCATTGAC-TGCTTTACAACCTG-AAAAT---T-GTG---TCAGAGCCT-AAAATC--------A-C---TTGTGC-CACTAT-----TATTTGT---GATAAAT-ATT-GTT-----CGA-C-GCAATATCAGGTCGG-ACTAGCTCGTTAGAAAATGGGTGGTTCGGATgttaga
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCTCGCCGCTGAAAAAGCCAATTTTGGTACGGGTTGTTTAAAGGACATTCAAAGCTTTATCCTTGTAACAAATGTTTATCGCCAATCAAAACAATATTCAAA
Unaligned ( gi|18 ): CCATCGAAATGGCCGATTTTGATATGGGCTGTTTAAAGAACATTCAAAGCTCTATCATT
Unaligned ( gi|19 ): AGAGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGAGTA
Alignments
lowQualScore : 11 22222222 22222222 22222222222 111111 555555555555555555555555 111111 111111 33333 4444444 333333333333 111 11111 3333333 2222222 111 111 11111111 1111 22222222222222222222222 11111 22222 111 1111 11
lowQualScore : 44 1 1 7 3 0 1 5 4 11111111 11111111 44 77 77 5 55555555555 0 0 0 5 5 0 5 2 1 000000 5 5 777 2 33 77 5 444444444444444444444444 0 666666 5 77 1 5 1 1 999999 33333 6 6 1111111 9999 77 2 1 3 9 3 99 444444444444 111 99 66666 6 99 6 5555555 77 6 6 99 3 7777777 5 000 5 77 1 44 11 88 4 0 333 88888888 4 4 4 2222 4 777 0 888 6 55555555555555555555555 11111 22222 2 8 444 8888 8 0000 4 4 0 4 1 33 66
lowQualScore : .. . . . . . . . . ........ ........ .. .. .. . ........... . . . . . . . . . ...... . . ... . .. .. . ........................ . ...... . .. . . . . ...... ..... . . ....... .... .. . . . . . .. ............ ... .. ..... . .. . ....... .. . . .. . ....... . ... . .. . .. .. .. . . ... ........ . . . .... . ... . ... . ....................... ..... ..... . . ... .... . .... . . . . . .. ..
lowQualScore : 66 0 0 3 2 6 0 0 3 22222222 00000000 77 99 99 7 22222222222 1 9 1 0 0 2 0 5 4 999999 0 0 666 8 77 99 7 666666666666666666666666 7 444444 7 99 7 7 0 4 222222 00000 7 7 8888888 3333 77 5 0 2 8 2 22 222222222222 777 22 77777 7 22 7 0000000 99 7 7 22 5 3333333 7 000 7 00 4 44 00 44 4 8 999 00000000 0 9 0 5555 4 888 8 666 7 44444444444444444444444 11111 55555 4 0 777 5555 2 9999 0 0 7 4 9 88 99
consensus : ATTCATTCGAAGACGCACCTTTAAAACAAAGCTATTNT-GCCACACTAAGGATTAAT--C-----CATA-AAT----TTCNAA--AATCGA-A-TGGA-C----AAACAGATGATTGAGGTG-AA-GGTCGTTTACTAAAATTTC-GGAACGGCATTGAGA----TGTTTTG-ACAAAACG-AAATT--AATNCTGCCNGTACTATAC--ATAT-GCATG-----------------------TCCGCATAATACGTA------ATTTCATG-GG--TGTAGGAAA-GGTGTAAATTA------TAAT---CGAAAAA-AGAACTTTAGGTTTGTG-T---TAAA--T-AAAG-TGTCATACTGGTTTATTCCTTTTCAAAACGAAC--TGAT------------GATGCAATAT---TTTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATAA--TTA-TGACGTGAAATAAAAACAAATTCTGGT-------TA--AATGTTTAAACGA-TG--ATGTATT----TGTGATTAATGA-ACACTG---AT-G-AATACGGATTAAAG-TGGA-TTTATT---GTTC---GCCGTTGAC-TGCTTTACCNCCTG-AAAA----T-ATG---TAAGTGCCTGAAAATC--------A-C---TTGT-T-TACTAT-----TATTTTC---GCTNAAA-ATNCGTT----CCGACC-GAAAT-TCA-GTCGGAACTAGCTCGTTANAAAATGG--GGTTCGGAT
Reference ( family-142 ) : ATTCATTCGAAGACGCACCTTTAAAACAAAGCTATTNT-GCCACACTAAGGATTAAT--C-----CATA-AAT----TTCNAA--AATCGA-AACGGA-C----AAACAGATGATTGAGGTG-AA-GGTCGTTTACTAAAATTTC-GGAACGGCATTGAGA----TGTTTTG-ACAAAACG-AAATT--AATNCTGCCNGTACTATAC--ATAT-GCATG-----------------------TCCGCATAATACGTA------ATTTCATG-GG--TGTAGGAAA-GGTGTAAATTA------TAAT---CGAAAAA-AGAACTTTAGGTTTGTG-T---TAAA--T-AAAG-TGTCATACTGGTTTATTCCTTTTCAAAACGAAC--TGAT------------GATGCAATAT---TTTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATAA--TTA-TGACGTGAAATAAAAACAAATTCTGGT-------TA--AATGTTTAAACGA-TG--ATGTATT----TGTGATTAATGA-ACACTG---AT-G-AATACGGATTAAAG-TGGA-TTTATT---GTTC---GCCGTTGAC-TGCTTTACCNCCTG-AAAA----T-ATG---TAAGTGCCTGAAAATC--------A-C---TTGT-T-TACTAT-----TATTTTC---GCTNAAA-ATNCGTT----CCGACC-GAAAT-TCA-GTCGGAACTAGCTCGTTANAAAATGG--GGTTCGGAT
gi|1 : CGCACTTT-------AAGCCATGAT-GCCACACTAAGGATTAAT--C-----AATA-AAT----TT--AA--AATCGA-AGTAGA-C----AA-CAAATGAAGAAGGTG-GA-GGTCGTTTCCTAAAACTTT-GCAAAGACATTGA--------TTTTG-ACAAAACG-AAATT--GATACTGTCAGCACTATGA--ATAT-GCATA----------------------------AT--TACGTA------ATTTCATG-GG--TGTAGGAAA-GGTGTAAATTA------TAAT---TGAAAAA-AGAACTGTA--TTTTAG-TAAGTAAA--T-AAA------AGACT---------CCTTTAAAAATAAAC--TGAT------------GAATCAATAT---TTTCGTTTCCCGAAAA--AA-----G-ACTTGCAAAACAA--TTA-TGACGTGAAA
gi|1 : aatcctcactgctgaaaaggccacttttgatatggattatttaaagaacgttcaaagctttatcagtaattaatggtcatcaccaaacaataatA-TTTATT---GTTC---GCCATTGAC-TGCTGTACTTCCTG-AAAA----T-ATG---TAAATGTCTGAGAATCACTACAATA-C---TTGT-TCTATTACATTTGTATTTTC---TCTCAAA-ATATGCT----CCAATT-AAAAT-TCA-GTCGGAACTAGCTCGTTA-AAAGTGG--GTTTGGGATatttattgttcgccattgactgctgtacttcctgaaaatatgtaaatgtctgagaatcactacaatacttgttctattacatttgtattttctctcaaaatatgctccaattaaaattcagtcggaactagctcgttaaaagtgggtttgggatgtttgagtatgaggtttatgtaaggaacattaaccaaggctctaaattgttggagcaggacgcg
gi|10 : aatcctcactgctgaaaaggccacttttgatatggattatttaaagaacgttcaaagctttatcagtaattaatggtcatcaccaaacaataatcgcactttaagccatgatgccacactaaggattaatcaataaatttaaaatcgaagtagacaacaaatgaagaaggtggaggtcgtttcctaaaactttgcaaagacattgattttgacaaaacgaaattgatactgtcagcactatgaatatgcataattacgtaatttcatgggtgtaggaaaggtgtaaattataattgaaaaaagaactgtattttagtaagtaaataaaagactcctttaaaaataaactgatgaatcaatattttcgtttcccgaaaaaagacttgcaaaacaattatgacgtgaaaACATAGTTGCTCT-GCCACACTAAGGATTAAT--T-----TATA-CATGTAATTCTAA--AATCGA-ACTGAT-C----AACTAG-TGATTAAGGCG-AA-GGTCATTTACTAAAATTTC-GGAACGGAATTCACA----TGTATTG-ACAAAACG-AAATT--AATCCTGCCGGTACTATgtttgagtatgaggtttatgtaaggaacattaaccaaggctctaaattgttggagcaggacgcg
gi|11 : ATTCATT--AAAACGCACCTT-AAAACATAGCTATTAT-GCCACACTAAGGgtaaa
gi|12 : tctcgccgctgaaaaagtcaattttgatatgggttgtttaaaagaagcattcaaagatttatcttaacaaatgttatcaacaatcaaataatcagtCACTC--AGACATACCTCTAAAACAAAGTGATTAT-GCCATA
gi|13 : tctccgctgaaaaaaccaattttggtatgggttgtttaaagagcattcaaagctttataatgaacaaatggtcatcaccaatcaaatattcgttatttaTCAAAGATGGA-TTTATT---GTTA---TGCGTTGAC-TGC-TTACCACTAG-TAAA----TAATG---TGAGT--CTGAAAA-C--------ATC---TTGT-T-GGCTAT-----TAATTTT---ACTCAAATATGC-TT----CCGATG-AAAAT-TCA-GT-GGAACa
gi|14 : TCT-GCCACACTAAG-ATTAAT--TATATACATGTAAC----TTCTAA--AATCGA-A-CGGATC----AAACTAGTGAT-AAGGCG-AAAGGTCATTTACTAAAATTTC-GGAACGGAATTCACA----TG-TTTG-ACAATACGAAAATT--AATCCTGCaaacagttgaccaaaat
gi|15 : cC-TGCTTCACCTTCTT-AAAA----T-ACAAAATAAGCACCT-AAAATA--------A-CATTTTTT-T-TACTAT-----CATTT--------AAAATATACGTTATGTTCAACCCGAAAT-TCC-GTCGGAACTGACACGTT-GAAAATGA--GGTTTGGAT
gi|17 : TTTT---GCTGAAA-ATCC-TT----CCTACC--AAAT-TTA-GTTGGAACGAGTTCCTTGAAAAATGG--TGTTCGtgtta
gi|2 : TA-AAT----TTTAAG--AA-CGA-A-TGGA------AAACAGATGATTGAGATGGAA-GGTCTTTTATTAAAATTTT-GAACCGGCATTGAGATTGTTATTTTGAACAAAAAG-AAATTGGAGTACTGCCAGTACTATACCGATATAGCATGTAACAACTGTACACTATGCAGTATCCG-ATAATACGTAACTGTGATTTTATG-GGTTTGTAAAAAATAATG--AATTACTTCAGTCATTTACGAAAAA-CGAACTTTAGGATTGTGATTG-TAAA--T-AAAG-TGTTATACTGA-TTATTTC-CTTCAAAACGAACCTTAATGAGTCCTCTGTGGATGCTATGTTAATTTCGTTTTCTTGAAACCAC-----G-ATCTGCAAAAAAAATCTATTGACGTGAAATAAAAACAAACGCTGAT-------TA--AATGTTTAAACAATTGATATGTAAT----TGAAGATAATGAGGCA-TGTCAAT-G-CATATGAAT--AAA-TGGA-CC--TT---GTTCAGAGCC-TTGA--TG--TTACTCCCTG-AAGA----
gi|3 : ttcgccgctgaaaaggacctattttgatatcgggttatttttaaatagaactttcaaagctttatcattagcacaacttggttatacaccaatcaaataatcaatattcactgaaatattttttATTCATTCAAAGATGCACCTTTAAAATAGAGCTGTTTT-GGCACACTAAGCATTAAT--C-----CATA-A-T----TTCAAA--AA-CGA-A-TTGC-T----AAACGGATGATTGAGGTA-AA-GGTCGATTATCAAAGGTTT-GGAACGACATTGAGA----TGTTTTG-ACAAAGCG-AAATT--CATACTGCTAGTACTATAC--ATAT-GCATG-----------------------TCCGCATAGTACGTT------ATTGCATA-TG--TATAAGNNN-NNNATACATc
gi|3 : tcacaaatcaaataatcgttATAC--ATAT-GCATG-----------------------TCCGCATAGTACGTT------ATTTCATA-TG--TATAAGAAA-G-------CTA------TAAT-----------------TTA--TTCA--------AAA--C-AAAA-T-------TGGTTTATTCCTTT-CAAAACGAAA--TGAT------------GATGTAATAT---TTTCGTTTACTGAAAA--AC-----G-ATCCGCAAAATAA--TTA-TGACGTGAAATAAAAACAAAGTCTGGT-------TA--AATGTTTAGACGA-TG--ATGTA------TGTGATTGATGA-GAACTG---AT-GCAATATGGATTAAAA-TGGA-TTTATT---GTTT---GTCATTGAC-TGCTTTATCATATG-AAAA----T-ATG---TAAGTG-CTGAAAATA--------A-C---TTGT-T-GACTAT-----TATTTTC----------------TT----CCTA----AAAT-TCA-GTCACAACTAGCTCATTAatgcatgtccgcatagtacgttatttcatatgtataagaaagctataatttattcaaaacaaaattggtttattcctttcaaaacgaaatgatgatgtaatattttcgtttactgaaaaacgatccgcaaaataattatgacgtgaaataaaaacaaagtctggttaaatgtttagacgatgatgtatgtgattgatgagaactgatgcaatatggattaaaatggatttattgtttgtcattgactgctttatcatatgaaaatatgtaagtgctgaaaataacttgttgactattattttcttcctaaaattcagtcacaactagctcattagcccgaggtatataagggacgttaacat
gi|4 : tcacaaatcaaataatcgttattcattcaaagatgcacctttaaaatagagctgttttggcacactaagcattaatccataatttcaaaaacgaattgctaaacggatgattgaggtaaaggtcgattatcaaaggtttggaacgacattgagatgttttgacaaagcgaaattcatactgctagtactatacatatgcatgtccgcatagtacgttattgcatatgtataagnnnnnnATTCATTTGAAGA-GCATATTTCA--TAAAACTACCGGAGGGACA--GAGTGTTATTTAC-----CAGA-ATG----TTCCACTTAACGGAGAATGAA-T----GAACAGATGATTCAGGTG-AA-GGTAGTTTACTAAAATTTC-GGAATGGAATTCAGG----TGTTTTG-ACAAAACG-AAATT--AATTTTGCCCGTACTATAC--AGGT-ACATG-----------------------TCCGCATAATACGTA------ATTTCATG-GG--TGTAGGAAA-AGTGTAAATTA------TAAT---TAAAAAA-AGAACTCCAGGTTTGTG-T---TTAATTT-AAAG-TGTCATATTGGTTTATTCCTTTTCAAAACGAAC--TGAT------------GATGAAATAT---ATTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATTT--TTA-TGATGTGAAATAAAAACAAATTCAGGT-------TA--AATGTTTAAACGA-TG--ATGTATTTGTCTGTGATTAATTT-ACACTG---AT-G-CATATGTATTAAAG-TGGA-TTTATT---GCTT---GCCATTGAC-TGCTTTAACACCTG-AAAA----T-GTG---TAAGTGCTTGAAAATC--------A-C---TTGT-T-TAATAT-----CATTTTC---ACTCAAA-ATTCGTT----CCGACC-AAAAT-TCA-ATCGGAACTAGCTCGTTAAAAAATGG--GGTTCGGGTgcccgaggtatataagggacgttaacat
gi|5 : GGA-C----AAA-AGATGATTGAGGTG-AA-GGTCGTTTACTAAAAT---------------AAGG----TGTTTTG-ACAAAACG-AAATT--GAATCTGCCT-TATTATAC--ATAT-GAATG-----------------------TCCGCATAATACGTA------ATTCCATG-GG--TGTAGAAAA-AGTGTAAATTA------TAAT-----AAAAATAGAACTTCAGGTTTGT-------AAA--TTAAAG-TGTCATACTGGTTTATTCCTTTTCAAAACGAAC--TGAT------------GATGCAATAT---ATTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATAG--TTA-TGATGTGAAATAATAACAAATTCCGAT-------TA--AATGTTTAAACGA-TG--ATGTATT------TGATTAATGA-ACACTG---AT-G-AATATGGATTAAA-----A-TTTGTC---A-----------TGAC-TGCTTTACC-CCTG-AAAA----T-GTG---T-AGTGCCTGAAA----------------------T-TACTAT-----TATTTTC---ACTCAAA-ATATGTT----CCGACC-AGAAT-TCA-GTCG----------------AAATGG--GGTTAGGAT
gi|6 : ttATTCATTCAAAGACGTACATTTAAAACAAAGTTCTTAT-GTCACACTTAGGATTAAT--C-----CATA-A-------TTAAA--AAT--A-AACGAA-TTAGAAAACAGG----TGAAGTT-TT-GGTCGTTTA-TGAAACTTCTGGAACGGCAATGAGA----TTTTATG-ACAAAACG-AAAT--------TGC-------ATGT--ATAT-GCATG-----------------------ACCGCATAATAAGTA------AGTTCATGAGG--T-TGAGAAA-GGTATAAATT---------AT---C---AGA-AGAACTTTGGGTTTATA-TG--TAAA--T-AAAGTTGTCATACTGGTTTATTCC-TTGCAAAACGAAC--TGAA------------GATACAATAG---TTTCGTTTTCTGAAAA--ACTACATGTATCTGCAAAATAA--TTA-TGACATGAAATAAAAACAAATTTTGGT-------CA--ACTGTTgttaga
gi|7 : aactctccgttgaaagggccaattgtatatgggtcttttaaagagtatttatcaatcactaatcaaataatcgttGTCAAACAGAAACAAATTCTGGTGATGGC-TA--TACATTTCAA-AA-TA--ATTTATT----TG--ATTAATGA-ACACTG---CT-G-AATACGGATC-AAG-TGGA-TTT-TTAC-GTTC---ACTGTTAAC-TGCTTTGTCTACTG-CAAA----T-ACG---TAAG-GTCTTAAAATT--------A-A---TT-------CTGT-----TTTCTTTAAAACTAAAA-ATGTGTT----CC-ACT-GAAAT-TCA-GTTAAAACGAGTTATTTACAAAATGA--GGCTCGGAT
gi|8 : GAGGTCAAACCGAAACAAATTCTGGTGATCGGCTATTAATTTCCAAA--A-TA--ATTTATT-------GATTAATGA-ACACTG---CT-G-AATACG---TA----TGGA-TTTATTTACGTTC---A-TGTTAACTTGCTTTGTCTACTGCAAAAGTCGC-ATA----AAGT--CTTAAAATT--------A-A---TT-------CTGT-----TTTCTTTAAAACTAAAA-ATT--TT----CC-ACT-GAAAT-TCA-GTTAAAAC--GATTATT-TACAATGA--GGCTCGGATgttaga
gi|9 : AATGA-ACAC-G---ATTG-CAT-TGG-TTAAAG-TGGAATTTATT---GTT----GTCATTGAC-TGCTTTACAACCTG-AAAAT---T-GTG---TCAGAGCCT-AAAATC--------A-C---TTGTGC-CACTAT-----TATTTGT---GATAAAT-ATT-GTT-----CGA-C-GCAATATCAGGTCGG-ACTAGCTCGTTAGAAAATGGGTGGTTCGGATgttaga
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCTCGCCGCTGAAAAAGCCAATTTTGGTACGGGTTGTTTAAAGGACATTCAAAGCTTTATCCTTGTAACAAATGTTTATCGCCAATCAAAACAATATTCAAA
Unaligned ( gi|18 ): CCATCGAAATGGCCGATTTTGATATGGGCTGTTTAAAGAACATTCAAAGCTCTATCATT
Unaligned ( gi|19 ): AGAGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGAGTA
Alignments
lowQualScore : 11 1 22222 22222222 1111 1 11 111111 555555555555555555555555 111111 111111 33333 4444444 333333333333 111 11111 3333333 2222222 111 111 11111111 1111 22222222222222222222222 11111 22222 111 1111 11
lowQualScore : 99 0 2 1 2 00000 00000000 77 9999 0 0 33 0 5 5 0 5 2 1 000000 5 5 777 2 33 77 5 444444444444444444444444 0 666666 5 77 1 5 1 1 999999 33333 6 6 1111111 9999 77 2 1 3 9 3 99 444444444444 111 99 66666 6 99 6 5555555 77 6 6 99 3 7777777 5 000 5 77 1 44 11 88 4 0 333 88888888 4 4 4 2222 4 777 0 888 6 55555555555555555555555 11111 22222 2 8 444 8888 8 0000 4 4 0 4 1 33 66
lowQualScore : .. . . . . ..... ........ .. .... . . .. . . . . . . . ...... . . ... . .. .. . ........................ . ...... . .. . . . . ...... ..... . . ....... .... .. . . . . . .. ............ ... .. ..... . .. . ....... .. . . .. . ....... . ... . .. . .. .. .. . . ... ........ . . . .... . ... . ... . ....................... ..... ..... . . ... .... . .... . . . . . .. ..
lowQualScore : 22 6 2 0 5 00000 77777777 00 0000 0 2 55 1 0 0 2 0 5 4 999999 0 0 666 8 77 99 7 666666666666666666666666 7 444444 7 99 7 7 0 4 222222 00000 7 7 8888888 3333 77 5 0 2 8 2 22 222222222222 777 22 77777 7 22 7 0000000 99 7 7 22 5 3333333 7 000 7 00 4 44 00 44 4 8 999 00000000 0 9 0 5555 4 888 8 666 7 44444444444444444444444 11111 55555 4 0 777 5555 2 9999 0 0 7 4 9 88 99
consensus : ATTCATTCAAAGACGCACCTTTAAAACANAGCTATTATGCCACACTAAGGATTAATC-----CATA-AAT----TTCAAAAAT---CGAA-TGGA-CAAACAGATGATTGAGGTG-AA-GGTCGTTTACTAAAATTTC-GGAACGGCATTGAGA----TGTTTTG-ACAAAACG-AAATT--AATNCTGCCNGTACTATAC--ATAT-GCATG-----------------------TCCGCATAATACGTA------ATTTCATG-GG--TGTAGGAAA-GGTGTAAATTA------TAAT---CGAAAAA-AGAACTTTAGGTTTGTG-T---TAAA--T-AAAG-TGTCATACTGGTTTATTCCTTTTCAAAACGAAC--TGAT------------GATGCAATAT---TTTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATAA--TTA-TGACGTGAAATAAAAACAAATTCTGGT-------TA--AATGTTTAAACGA-TG--ATGTATT----TGTGATTAATGA-ACACTG---AT-G-AATACGGATTAAAG-TGGA-TTTATT---GTTC---GCCGTTGAC-TGCTTTACCNCCTG-AAAA----T-ATG---TAAGTGCCTGAAAATC--------A-C---TTGT-T-TACTAT-----TATTTTC---GCTNAAA-ATNCGTT----CCGACC-GAAAT-TCA-GTCGGAACTAGCTCGTTANAAAATGG--GGTTCGGAT
Reference ( family-142 ) : ATTCATTCGAAGACGCACCTTTAAAACAAAGCTATTNTGCCACACTAAGGATTAATC-----CATA-AAT----TTCNAAAAT---CGAA-TGGA-CAAACAGATGATTGAGGTG-AA-GGTCGTTTACTAAAATTTC-GGAACGGCATTGAGA----TGTTTTG-ACAAAACG-AAATT--AATNCTGCCNGTACTATAC--ATAT-GCATG-----------------------TCCGCATAATACGTA------ATTTCATG-GG--TGTAGGAAA-GGTGTAAATTA------TAAT---CGAAAAA-AGAACTTTAGGTTTGTG-T---TAAA--T-AAAG-TGTCATACTGGTTTATTCCTTTTCAAAACGAAC--TGAT------------GATGCAATAT---TTTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATAA--TTA-TGACGTGAAATAAAAACAAATTCTGGT-------TA--AATGTTTAAACGA-TG--ATGTATT----TGTGATTAATGA-ACACTG---AT-G-AATACGGATTAAAG-TGGA-TTTATT---GTTC---GCCGTTGAC-TGCTTTACCNCCTG-AAAA----T-ATG---TAAGTGCCTGAAAATC--------A-C---TTGT-T-TACTAT-----TATTTTC---GCTNAAA-ATNCGTT----CCGACC-GAAAT-TCA-GTCGGAACTAGCTCGTTANAAAATGG--GGTTCGGAT
gi|1 : CGCACTTT-------AAGCCATGATGCCACACTAAGGATTAATC-----AATA-AAT----TT--AAAAT---CGAAGTAGA-CAA-CAAATGAAGAAGGTG-GA-GGTCGTTTCCTAAAACTTT-GCAAAGACATTGA--------TTTTG-ACAAAACG-AAATT--GATACTGTCAGCACTATGA--ATAT-GCATA----------------------------AT--TACGTA------ATTTCATG-GG--TGTAGGAAA-GGTGTAAATTA------TAAT---TGAAAAA-AGAACTGTA--TTTTAG-TAAGTAAA--T-AAA------AGACT---------CCTTTAAAAATAAAC--TGAT------------GAATCAATAT---TTTCGTTTCCCGAAAA--AA-----G-ACTTGCAAAACAA--TTA-TGACGTGAAA
gi|1 : aatcctcactgctgaaaaggccacttttgatatggattatttaaagaacgttcaaagctttatcagtaattaatggtcatcaccaaacaataatA-TTTATT---GTTC---GCCATTGAC-TGCTGTACTTCCTG-AAAA----T-ATG---TAAATGTCTGAGAATCACTACAATA-C---TTGT-TCTATTACATTTGTATTTTC---TCTCAAA-ATATGCT----CCAATT-AAAAT-TCA-GTCGGAACTAGCTCGTTA-AAAGTGG--GTTTGGGATatttattgttcgccattgactgctgtacttcctgaaaatatgtaaatgtctgagaatcactacaatacttgttctattacatttgtattttctctcaaaatatgctccaattaaaattcagtcggaactagctcgttaaaagtgggtttgggatgtttgagtatgaggtttatgtaaggaacattaaccaaggctctaaattgttggagcaggacgcg
gi|10 : aatcctcactgctgaaaaggccacttttgatatggattatttaaagaacgttcaaagctttatcagtaattaatggtcatcaccaaacaataatcgcactttaagccatgatgccacactaaggattaatcaataaatttaaaatcgaagtagacaacaaatgaagaaggtggaggtcgtttcctaaaactttgcaaagacattgattttgacaaaacgaaattgatactgtcagcactatgaatatgcataattacgtaatttcatgggtgtaggaaaggtgtaaattataattgaaaaaagaactgtattttagtaagtaaataaaagactcctttaaaaataaactgatgaatcaatattttcgtttcccgaaaaaagacttgcaaaacaattatgacgtgaaaACATAGTTGCTCTGCCACACTAAGGATTAATT-----TATA-CATGTAATTCTAAAAT---CGAA-CTGA-TCAACTAGTGATTAAGGCG-AA-GGTCATTTACTAAAATTTC-GGAACGGAATTCACA----TGTATTG-ACAAAACG-AAATT--AATCCTGCCGGTACTATgtttgagtatgaggtttatgtaaggaacattaaccaaggctctaaattgttggagcaggacgcg
gi|11 : ATTCATT--AAAACGCACCTT-AAAACATAGCTATTATGCCACACTAAGGgtaaa
gi|12 : tctcgccgctgaaaaagtcaattttgatatgggttgtttaaaagaagcattcaaagatttatcttaacaaatgttatcaacaatcaaataatcagtCACTC--AGACATACCTCTAAAACAAAGTGATTATGCCATA
gi|13 : tctccgctgaaaaaaccaattttggtatgggttgtttaaagagcattcaaagctttataatgaacaaatggtcatcaccaatcaaatattcgttatttaTCAAAGATGGA-TTTATT---GTTA---TGCGTTGAC-TGC-TTACCACTAG-TAAA----TAATG---TGAGT--CTGAAAA-C--------ATC---TTGT-T-GGCTAT-----TAATTTT---ACTCAAATATGC-TT----CCGATG-AAAAT-TCA-GT-GGAACa
gi|14 : TCTGCCACACTAAG-ATTAATTATATACATGTAAC----TTCTAAAAT---CGAA-CGGATCAAACTAGTGAT-AAGGCG-AAAGGTCATTTACTAAAATTTC-GGAACGGAATTCACA----TG-TTTG-ACAATACGAAAATT--AATCCTGCaaacagttgaccaaaat
gi|15 : cC-TGCTTCACCTTCTT-AAAA----T-ACAAAATAAGCACCT-AAAATA--------A-CATTTTTT-T-TACTAT-----CATTT--------AAAATATACGTTATGTTCAACCCGAAAT-TCC-GTCGGAACTGACACGTT-GAAAATGA--GGTTTGGAT
gi|17 : TTTT---GCTGAAA-ATCC-TT----CCTACC--AAAT-TTA-GTTGGAACGAGTTCCTTGAAAAATGG--TGTTCGtgtta
gi|2 : TA-AAT----TTTAAGAA----CGAA-TGGA--AAACAGATGATTGAGATGGAA-GGTCTTTTATTAAAATTTT-GAACCGGCATTGAGATTGTTATTTTGAACAAAAAG-AAATTGGAGTACTGCCAGTACTATACCGATATAGCATGTAACAACTGTACACTATGCAGTATCCG-ATAATACGTAACTGTGATTTTATG-GGTTTGTAAAAAATAATG--AATTACTTCAGTCATTTACGAAAAA-CGAACTTTAGGATTGTGATTG-TAAA--T-AAAG-TGTTATACTGA-TTATTTC-CTTCAAAACGAACCTTAATGAGTCCTCTGTGGATGCTATGTTAATTTCGTTTTCTTGAAACCAC-----G-ATCTGCAAAAAAAATCTATTGACGTGAAATAAAAACAAACGCTGAT-------TA--AATGTTTAAACAATTGATATGTAAT----TGAAGATAATGAGGCA-TGTCAAT-G-CATATGAAT--AAA-TGGA-CC--TT---GTTCAGAGCC-TTGA--TG--TTACTCCCTG-AAGA----
gi|3 : ttcgccgctgaaaaggacctattttgatatcgggttatttttaaatagaactttcaaagctttatcattagcacaacttggttatacaccaatcaaataatcaatattcactgaaatattttttATTCATTCAAAGATGCACCTTTAAAATAGAGCTGTTTTGGCACACTAAGCATTAATC-----CATA-A-T----TTCAAAAA----CGAA-TTGC-TAAACGGATGATTGAGGTA-AA-GGTCGATTATCAAAGGTTT-GGAACGACATTGAGA----TGTTTTG-ACAAAGCG-AAATT--CATACTGCTAGTACTATAC--ATAT-GCATG-----------------------TCCGCATAGTACGTT------ATTGCATA-TG--TATAAGNNN-NNNATACATc
gi|3 : tcacaaatcaaataatcgttATAC--ATAT-GCATG-----------------------TCCGCATAGTACGTT------ATTTCATA-TG--TATAAGAAA-G-------CTA------TAAT-----------------TTA--TTCA--------AAA--C-AAAA-T-------TGGTTTATTCCTTT-CAAAACGAAA--TGAT------------GATGTAATAT---TTTCGTTTACTGAAAA--AC-----G-ATCCGCAAAATAA--TTA-TGACGTGAAATAAAAACAAAGTCTGGT-------TA--AATGTTTAGACGA-TG--ATGTA------TGTGATTGATGA-GAACTG---AT-GCAATATGGATTAAAA-TGGA-TTTATT---GTTT---GTCATTGAC-TGCTTTATCATATG-AAAA----T-ATG---TAAGTG-CTGAAAATA--------A-C---TTGT-T-GACTAT-----TATTTTC----------------TT----CCTA----AAAT-TCA-GTCACAACTAGCTCATTAatgcatgtccgcatagtacgttatttcatatgtataagaaagctataatttattcaaaacaaaattggtttattcctttcaaaacgaaatgatgatgtaatattttcgtttactgaaaaacgatccgcaaaataattatgacgtgaaataaaaacaaagtctggttaaatgtttagacgatgatgtatgtgattgatgagaactgatgcaatatggattaaaatggatttattgtttgtcattgactgctttatcatatgaaaatatgtaagtgctgaaaataacttgttgactattattttcttcctaaaattcagtcacaactagctcattagcccgaggtatataagggacgttaacat
gi|4 : tcacaaatcaaataatcgttattcattcaaagatgcacctttaaaatagagctgttttggcacactaagcattaatccataatttcaaaaacgaattgctaaacggatgattgaggtaaaggtcgattatcaaaggtttggaacgacattgagatgttttgacaaagcgaaattcatactgctagtactatacatatgcatgtccgcatagtacgttattgcatatgtataagnnnnnnGAA-TGAA-TGAACAGATGATTCAGGTG-AA-GGTAGTTTACTAAAATTTC-GGAATGGAATTCAGG----TGTTTTG-ACAAAACG-AAATT--AATTTTGCCCGTACTATAC--AGGT-ACATG-----------------------TCCGCATAATACGTA------ATTTCATG-GG--TGTAGGAAA-AGTGTAAATTA------TAAT---TAAAAAA-AGAACTCCAGGTTTGTG-T---TTAATTT-AAAG-TGTCATATTGGTTTATTCCTTTTCAAAACGAAC--TGAT------------GATGAAATAT---ATTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATTT--TTA-TGATGTGAAATAAAAACAAATTCAGGT-------TA--AATGTTTAAACGA-TG--ATGTATTTGTCTGTGATTAATTT-ACACTG---AT-G-CATATGTATTAAAG-TGGA-TTTATT---GCTT---GCCATTGAC-TGCTTTAACACCTG-AAAA----T-GTG---TAAGTGCTTGAAAATC--------A-C---TTGT-T-TAATAT-----CATTTTC---ACTCAAA-ATTCGTT----CCGACC-AAAAT-TCA-ATCGGAACTAGCTCGTTAAAAAATGG--GGTTCGGGTgcccgaggtatataagggacgttaacat
gi|5 : attcatttgaagagcatatttcataaaactaccggagggacagagtgttatttaccagaatgttccacttaacgga-TGGA-CAAA-AGATGATTGAGGTG-AA-GGTCGTTTACTAAAAT---------------AAGG----TGTTTTG-ACAAAACG-AAATT--GAATCTGCCT-TATTATAC--ATAT-GAATG-----------------------TCCGCATAATACGTA------ATTCCATG-GG--TGTAGAAAA-AGTGTAAATTA------TAAT-----AAAAATAGAACTTCAGGTTTGT-------AAA--TTAAAG-TGTCATACTGGTTTATTCCTTTTCAAAACGAAC--TGAT------------GATGCAATAT---ATTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATAG--TTA-TGATGTGAAATAATAACAAATTCCGAT-------TA--AATGTTTAAACGA-TG--ATGTATT------TGATTAATGA-ACACTG---AT-G-AATATGGATTAAA-----A-TTTGTC---A-----------TGAC-TGCTTTACC-CCTG-AAAA----T-GTG---T-AGTGCCTGAAA----------------------T-TACTAT-----TATTTTC---ACTCAAA-ATATGTT----CCGACC-AGAAT-TCA-GTCG----------------AAATGG--GGTTAGGAT
gi|6 : tATTCATTCAAAGACGTACATTTAAAACAAAGTTCTTATGTCACACTTAGGATTAATC-----CATA-A-------TTAAAAATAAACGAATTAGA--AAACAGG----TGAAGTT-TT-GGTCGTTTA-TGAAACTTCTGGAACGGCAATGAGA----TTTTATG-ACAAAACG-AAAT--------TGC-------ATGT--ATAT-GCATG-----------------------ACCGCATAATAAGTA------AGTTCATGAGG--T-TGAGAAA-GGTATAAATT---------AT---C---AGA-AGAACTTTGGGTTTATA-TG--TAAA--T-AAAGTTGTCATACTGGTTTATTCC-TTGCAAAACGAAC--TGAA------------GATACAATAG---TTTCGTTTTCTGAAAA--ACTACATGTATCTGCAAAATAA--TTA-TGACATGAAATAAAAACAAATTTTGGT-------CA--ACTGTTgttaga
gi|7 : aactctccgttgaaagggccaattgtatatgggtcttttaaagagtatttatcaatcactaatcaaataatcgttGTCAAACAGAAACAAATTCTGGTGATGGC-TA--TACATTTCAA-AA-TA--ATTTATT----TG--ATTAATGA-ACACTG---CT-G-AATACGGATC-AAG-TGGA-TTT-TTAC-GTTC---ACTGTTAAC-TGCTTTGTCTACTG-CAAA----T-ACG---TAAG-GTCTTAAAATT--------A-A---TT-------CTGT-----TTTCTTTAAAACTAAAA-ATGTGTT----CC-ACT-GAAAT-TCA-GTTAAAACGAGTTATTTACAAAATGA--GGCTCGGAT
gi|8 : GAGGTCAAACCGAAACAAATTCTGGTGATCGGCTATTAATTTCCAAA--A-TA--ATTTATT-------GATTAATGA-ACACTG---CT-G-AATACG---TA----TGGA-TTTATTTACGTTC---A-TGTTAACTTGCTTTGTCTACTGCAAAAGTCGC-ATA----AAGT--CTTAAAATT--------A-A---TT-------CTGT-----TTTCTTTAAAACTAAAA-ATT--TT----CC-ACT-GAAAT-TCA-GTTAAAAC--GATTATT-TACAATGA--GGCTCGGATgttaga
gi|9 : AATGA-ACAC-G---ATTG-CAT-TGG-TTAAAG-TGGAATTTATT---GTT----GTCATTGAC-TGCTTTACAACCTG-AAAAT---T-GTG---TCAGAGCCT-AAAATC--------A-C---TTGTGC-CACTAT-----TATTTGT---GATAAAT-ATT-GTT-----CGA-C-GCAATATCAGGTCGG-ACTAGCTCGTTAGAAAATGGGTGGTTCGGATgttaga
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCTCGCCGCTGAAAAAGCCAATTTTGGTACGGGTTGTTTAAAGGACATTCAAAGCTTTATCCTTGTAACAAATGTTTATCGCCAATCAAAACAATATTCAAA
Unaligned ( gi|18 ): CCATCGAAATGGCCGATTTTGATATGGGCTGTTTAAAGAACATTCAAAGCTCTATCATT
Unaligned ( gi|19 ): AGAGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGAGTA
Alignments
lowQualScore : 22222 22222222 1111 1 11 111111 555555555555555555555555 111111 111111 33333 4444444 333333333333 111 11111 3333333 2222222 111 111 11111111 1111 22222222222222222222222 11111 22222 111 1111 11
lowQualScore : 2 3 5 0 0 3 2 00000 00000000 77 9999 0 0 33 0 5 5 0 5 2 1 000000 5 5 777 2 33 77 5 444444444444444444444444 0 666666 5 77 1 5 1 1 999999 33333 6 6 1111111 9999 77 2 1 3 9 3 99 444444444444 111 99 66666 6 99 6 5555555 77 6 6 99 3 7777777 5 000 5 77 1 44 11 88 4 0 333 88888888 4 4 4 2222 4 777 0 888 6 55555555555555555555555 11111 22222 2 8 444 8888 8 0000 4 4 0 4 1 33 66
lowQualScore : . . . . . . . ..... ........ .. .... . . .. . . . . . . . ...... . . ... . .. .. . ........................ . ...... . .. . . . . ...... ..... . . ....... .... .. . . . . . .. ............ ... .. ..... . .. . ....... .. . . .. . ....... . ... . .. . .. .. .. . . ... ........ . . . .... . ... . ... . ....................... ..... ..... . . ... .... . .... . . . . . .. ..
lowQualScore : 5 2 0 8 8 3 5 00000 77777777 33 0000 0 2 55 1 0 0 2 0 5 4 999999 0 0 666 8 77 99 7 666666666666666666666666 7 444444 7 99 7 7 0 4 222222 00000 7 7 8888888 3333 77 5 0 2 8 2 22 222222222222 777 22 77777 7 22 7 0000000 99 7 7 22 5 3333333 7 000 7 00 4 44 00 44 4 8 999 00000000 0 9 0 5555 4 888 8 666 7 44444444444444444444444 11111 55555 4 0 777 5555 2 9999 0 0 7 4 9 88 99
consensus : ATTCATTCAAAGACGCACCTTTAAAACANAGCTATTATGCCACACTAAGGATTAATC-----CATA-AAT----TTCAAAAAT---CGAA-TGGA-CAAACAGATGATTGAGGTG-AA-GGTCGTTTACTAAAATTTC-GGAACGGCATTGAGA----TGTTTTG-ACAAAACG-AAATT--AATNCTGCCNGTACTATAC--ATAT-GCATG-----------------------TCCGCATAATACGTA------ATTTCATG-GG--TGTAGGAAA-GGTGTAAATTA------TAAT---CGAAAAA-AGAACTTTAGGTTTGTG-T---TAAA--T-AAAG-TGTCATACTGGTTTATTCCTTTTCAAAACGAAC--TGAT------------GATGCAATAT---TTTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATAA--TTA-TGACGTGAAATAAAAACAAATTCTGGT-------TA--AATGTTTAAACGA-TG--ATGTATT----TGTGATTAATGA-ACACTG---AT-G-AATACGGATTAAAG-TGGA-TTTATT---GTTC---GCCGTTGAC-TGCTTTACCNCCTG-AAAA----T-ATG---TAAGTGCCTGAAAATC--------A-C---TTGT-T-TACTAT-----TATTTTC---GCTNAAA-ATNCGTT----CCGACC-GAAAT-TCA-GTCGGAACTAGCTCGTTANAAAATGG--GGTTCGGAT
Reference ( family-142 ) : ATTCATTCAAAGACGCACCTTTAAAACANAGCTATTATGCCACACTAAGGATTAATC-----CATA-AAT----TTCAAAAAT---CGAA-TGGA-CAAACAGATGATTGAGGTG-AA-GGTCGTTTACTAAAATTTC-GGAACGGCATTGAGA----TGTTTTG-ACAAAACG-AAATT--AATNCTGCCNGTACTATAC--ATAT-GCATG-----------------------TCCGCATAATACGTA------ATTTCATG-GG--TGTAGGAAA-GGTGTAAATTA------TAAT---CGAAAAA-AGAACTTTAGGTTTGTG-T---TAAA--T-AAAG-TGTCATACTGGTTTATTCCTTTTCAAAACGAAC--TGAT------------GATGCAATAT---TTTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATAA--TTA-TGACGTGAAATAAAAACAAATTCTGGT-------TA--AATGTTTAAACGA-TG--ATGTATT----TGTGATTAATGA-ACACTG---AT-G-AATACGGATTAAAG-TGGA-TTTATT---GTTC---GCCGTTGAC-TGCTTTACCNCCTG-AAAA----T-ATG---TAAGTGCCTGAAAATC--------A-C---TTGT-T-TACTAT-----TATTTTC---GCTNAAA-ATNCGTT----CCGACC-GAAAT-TCA-GTCGGAACTAGCTCGTTANAAAATGG--GGTTCGGAT
gi|1 : CGCAC-TTTAA------GCCATGATGCCACACTAAGGATTAATC-----AATA-AAT----TT--AAAAT---CGAAGTAGA-CAA-CAAATGAAGAAGGTG-GA-GGTCGTTTCCTAAAACTTT-GCAAAGACATTGA--------TTTTG-ACAAAACG-AAATT--GATACTGTCAGCACTATGA--ATAT-GCATA----------------------------AT--TACGTA------ATTTCATG-GG--TGTAGGAAA-GGTGTAAATTA------TAAT---TGAAAAA-AGAACTGTA--TTTTAG-TAAGTAAA--T-AAA------AGACT---------CCTTTAAAAATAAAC--TGAT------------GAATCAATAT---TTTCGTTTCCCGAAAA--AA-----G-ACTTGCAAAACAA--TTA-TGACGTGAAA
gi|1 : aatcctcactgctgaaaaggccacttttgatatggattatttaaagaacgttcaaagctttatcagtaattaatggtcatcaccaaacaataatA-TTTATT---GTTC---GCCATTGAC-TGCTGTACTTCCTG-AAAA----T-ATG---TAAATGTCTGAGAATCACTACAATA-C---TTGT-TCTATTACATTTGTATTTTC---TCTCAAA-ATATGCT----CCAATT-AAAAT-TCA-GTCGGAACTAGCTCGTTA-AAAGTGG--GTTTGGGATatttattgttcgccattgactgctgtacttcctgaaaatatgtaaatgtctgagaatcactacaatacttgttctattacatttgtattttctctcaaaatatgctccaattaaaattcagtcggaactagctcgttaaaagtgggtttgggatgtttgagtatgaggtttatgtaaggaacattaaccaaggctctaaattgttggagcaggacgcg
gi|10 : aatcctcactgctgaaaaggccacttttgatatggattatttaaagaacgttcaaagctttatcagtaattaatggtcatcaccaaacaataatcgcactttaagccatgatgccacactaaggattaatcaataaatttaaaatcgaagtagacaacaaatgaagaaggtggaggtcgtttcctaaaactttgcaaagacattgattttgacaaaacgaaattgatactgtcagcactatgaatatgcataattacgtaatttcatgggtgtaggaaaggtgtaaattataattgaaaaaagaactgtattttagtaagtaaataaaagactcctttaaaaataaactgatgaatcaatattttcgtttcccgaaaaaagacttgcaaaacaattatgacgtgaaaACATAGTTGCTCTGCCACACTAAGGATTAATT-----TATA-CATGTAATTCTAAAAT---CGAA-CTGA-TCAACTAGTGATTAAGGCG-AA-GGTCATTTACTAAAATTTC-GGAACGGAATTCACA----TGTATTG-ACAAAACG-AAATT--AATCCTGCCGGTACTATgtttgagtatgaggtttatgtaaggaacattaaccaaggctctaaattgttggagcaggacgcg
gi|11 : ATTCATT--AAAACGCACCTT-AAAACATAGCTATTATGCCACACTAAGGgtaaa
gi|12 : tctcgccgctgaaaaagtcaattttgatatgggttgtttaaaagaagcattcaaagatttatcttaacaaatgttatcaacaatcaaataatcagtCACTCA--GACATACCTCTAAAACAAAGTGATTATGCCATA
gi|13 : tctccgctgaaaaaaccaattttggtatgggttgtttaaagagcattcaaagctttataatgaacaaatggtcatcaccaatcaaatattcgttatttaTCAAAGATGGA-TTTATT---GTTA---TGCGTTGAC-TGC-TTACCACTAG-TAAA----TAATG---TGAGT--CTGAAAA-C--------ATC---TTGT-T-GGCTAT-----TAATTTT---ACTCAAATATGC-TT----CCGATG-AAAAT-TCA-GT-GGAACa
gi|14 : TGCCACACTAAG-ATTAATTATATACATGTAAC----TTCTAAAAT---CGAA-CGGATCAAACTAGTGAT-AAGGCG-AAAGGTCATTTACTAAAATTTC-GGAACGGAATTCACA----TG-TTTG-ACAATACGAAAATT--AATCCTGCaaacagttgaccaaaat
gi|15 : ctcC-TGCTTCACCTTCTT-AAAA----T-ACAAAATAAGCACCT-AAAATA--------A-CATTTTTT-T-TACTAT-----CATTT--------AAAATATACGTTATGTTCAACCCGAAAT-TCC-GTCGGAACTGACACGTT-GAAAATGA--GGTTTGGAT
gi|17 : TTTT---GCTGAAA-ATCC-TT----CCTACC--AAAT-TTA-GTTGGAACGAGTTCCTTGAAAAATGG--TGTTCGtgtta
gi|2 : TA-AAT----TTTAAGAA----CGAA-TGGA--AAACAGATGATTGAGATGGAA-GGTCTTTTATTAAAATTTT-GAACCGGCATTGAGATTGTTATTTTGAACAAAAAG-AAATTGGAGTACTGCCAGTACTATACCGATATAGCATGTAACAACTGTACACTATGCAGTATCCG-ATAATACGTAACTGTGATTTTATG-GGTTTGTAAAAAATAATG--AATTACTTCAGTCATTTACGAAAAA-CGAACTTTAGGATTGTGATTG-TAAA--T-AAAG-TGTTATACTGA-TTATTTC-CTTCAAAACGAACCTTAATGAGTCCTCTGTGGATGCTATGTTAATTTCGTTTTCTTGAAACCAC-----G-ATCTGCAAAAAAAATCTATTGACGTGAAATAAAAACAAACGCTGAT-------TA--AATGTTTAAACAATTGATATGTAAT----TGAAGATAATGAGGCA-TGTCAAT-G-CATATGAAT--AAA-TGGA-CC--TT---GTTCAGAGCC-TTGA--TG--TTACTCCCTG-AAGA----
gi|3 : ttcgccgctgaaaaggacctattttgatatcgggttatttttaaatagaactttcaaagctttatcattagcacaacttggttatacaccaatcaaataatcaatattcactgaaatattttttATTCATTCAAAGATGCACCTTTAAAATAGAGCTGTTTTGGCACACTAAGCATTAATC-----CATA-A-T----TTCAAAAA----CGAA-TTGC-TAAACGGATGATTGAGGTA-AA-GGTCGATTATCAAAGGTTT-GGAACGACATTGAGA----TGTTTTG-ACAAAGCG-AAATT--CATACTGCTAGTACTATAC--ATAT-GCATG-----------------------TCCGCATAGTACGTT------ATTGCATA-TG--TATAAGNNN-NNNATACATc
gi|3 : tcacaaatcaaataatcgttATAC--ATAT-GCATG-----------------------TCCGCATAGTACGTT------ATTTCATA-TG--TATAAGAAA-G-------CTA------TAAT-----------------TTA--TTCA--------AAA--C-AAAA-T-------TGGTTTATTCCTTT-CAAAACGAAA--TGAT------------GATGTAATAT---TTTCGTTTACTGAAAA--AC-----G-ATCCGCAAAATAA--TTA-TGACGTGAAATAAAAACAAAGTCTGGT-------TA--AATGTTTAGACGA-TG--ATGTA------TGTGATTGATGA-GAACTG---AT-GCAATATGGATTAAAA-TGGA-TTTATT---GTTT---GTCATTGAC-TGCTTTATCATATG-AAAA----T-ATG---TAAGTG-CTGAAAATA--------A-C---TTGT-T-GACTAT-----TATTTTC----------------TT----CCTA----AAAT-TCA-GTCACAACTAGCTCATTAatgcatgtccgcatagtacgttatttcatatgtataagaaagctataatttattcaaaacaaaattggtttattcctttcaaaacgaaatgatgatgtaatattttcgtttactgaaaaacgatccgcaaaataattatgacgtgaaataaaaacaaagtctggttaaatgtttagacgatgatgtatgtgattgatgagaactgatgcaatatggattaaaatggatttattgtttgtcattgactgctttatcatatgaaaatatgtaagtgctgaaaataacttgttgactattattttcttcctaaaattcagtcacaactagctcattagcccgaggtatataagggacgttaacat
gi|4 : tcacaaatcaaataatcgttattcattcaaagatgcacctttaaaatagagctgttttggcacactaagcattaatccataatttcaaaaacgaattgctaaacggatgattgaggtaaaggtcgattatcaaaggtttggaacgacattgagatgttttgacaaagcgaaattcatactgctagtactatacatatgcatgtccgcatagtacgttattgcatatgtataagnnnnnnGAA-TGAA-TGAACAGATGATTCAGGTG-AA-GGTAGTTTACTAAAATTTC-GGAATGGAATTCAGG----TGTTTTG-ACAAAACG-AAATT--AATTTTGCCCGTACTATAC--AGGT-ACATG-----------------------TCCGCATAATACGTA------ATTTCATG-GG--TGTAGGAAA-AGTGTAAATTA------TAAT---TAAAAAA-AGAACTCCAGGTTTGTG-T---TTAATTT-AAAG-TGTCATATTGGTTTATTCCTTTTCAAAACGAAC--TGAT------------GATGAAATAT---ATTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATTT--TTA-TGATGTGAAATAAAAACAAATTCAGGT-------TA--AATGTTTAAACGA-TG--ATGTATTTGTCTGTGATTAATTT-ACACTG---AT-G-CATATGTATTAAAG-TGGA-TTTATT---GCTT---GCCATTGAC-TGCTTTAACACCTG-AAAA----T-GTG---TAAGTGCTTGAAAATC--------A-C---TTGT-T-TAATAT-----CATTTTC---ACTCAAA-ATTCGTT----CCGACC-AAAAT-TCA-ATCGGAACTAGCTCGTTAAAAAATGG--GGTTCGGGTgcccgaggtatataagggacgttaacat
gi|5 : attcatttgaagagcatatttcataaaactaccggagggacagagtgttatttaccagaatgttccacttaacgga-TGGA-CAAA-AGATGATTGAGGTG-AA-GGTCGTTTACTAAAAT---------------AAGG----TGTTTTG-ACAAAACG-AAATT--GAATCTGCCT-TATTATAC--ATAT-GAATG-----------------------TCCGCATAATACGTA------ATTCCATG-GG--TGTAGAAAA-AGTGTAAATTA------TAAT-----AAAAATAGAACTTCAGGTTTGT-------AAA--TTAAAG-TGTCATACTGGTTTATTCCTTTTCAAAACGAAC--TGAT------------GATGCAATAT---ATTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATAG--TTA-TGATGTGAAATAATAACAAATTCCGAT-------TA--AATGTTTAAACGA-TG--ATGTATT------TGATTAATGA-ACACTG---AT-G-AATATGGATTAAA-----A-TTTGTC---A-----------TGAC-TGCTTTACC-CCTG-AAAA----T-GTG---T-AGTGCCTGAAA----------------------T-TACTAT-----TATTTTC---ACTCAAA-ATATGTT----CCGACC-AGAAT-TCA-GTCG----------------AAATGG--GGTTAGGAT
gi|6 : tATTCATTCAAAGACGTACATTTAAAACAAAGTTCTTATGTCACACTTAGGATTAATC-----CATA-A-------TTAAAAATAAACGAATTAGA--AAACAGG----TGAAGTT-TT-GGTCGTTTA-TGAAACTTCTGGAACGGCAATGAGA----TTTTATG-ACAAAACG-AAAT--------TGC-------ATGT--ATAT-GCATG-----------------------ACCGCATAATAAGTA------AGTTCATGAGG--T-TGAGAAA-GGTATAAATT---------AT---C---AGA-AGAACTTTGGGTTTATA-TG--TAAA--T-AAAGTTGTCATACTGGTTTATTCC-TTGCAAAACGAAC--TGAA------------GATACAATAG---TTTCGTTTTCTGAAAA--ACTACATGTATCTGCAAAATAA--TTA-TGACATGAAATAAAAACAAATTTTGGT-------CA--ACTGTTgttaga
gi|7 : aactctccgttgaaagggccaattgtatatgggtcttttaaagagtatttatcaatcactaatcaaataatcgttGTCAAACAGAAACAAATTCTGGTGATGGC-TA--TACATTTCAA-AA-TA--ATTTATT----TG--ATTAATGA-ACACTG---CT-G-AATACGGATC-AAG-TGGA-TTT-TTAC-GTTC---ACTGTTAAC-TGCTTTGTCTACTG-CAAA----T-ACG---TAAG-GTCTTAAAATT--------A-A---TT-------CTGT-----TTTCTTTAAAACTAAAA-ATGTGTT----CC-ACT-GAAAT-TCA-GTTAAAACGAGTTATTTACAAAATGA--GGCTCGGAT
gi|8 : GAGGTCAAACCGAAACAAATTCTGGTGATCGGCTATTAATTTCCAAA--A-TA--ATTTATT-------GATTAATGA-ACACTG---CT-G-AATACG---TA----TGGA-TTTATTTACGTTC---A-TGTTAACTTGCTTTGTCTACTGCAAAAGTCGC-ATA----AAGT--CTTAAAATT--------A-A---TT-------CTGT-----TTTCTTTAAAACTAAAA-ATT--TT----CC-ACT-GAAAT-TCA-GTTAAAAC--GATTATT-TACAATGA--GGCTCGGATgttaga
gi|9 : AATGA-ACAC-G---ATTG-CAT-TGG-TTAAAG-TGGAATTTATT---GTT----GTCATTGAC-TGCTTTACAACCTG-AAAAT---T-GTG---TCAGAGCCT-AAAATC--------A-C---TTGTGC-CACTAT-----TATTTGT---GATAAAT-ATT-GTT-----CGA-C-GCAATATCAGGTCGG-ACTAGCTCGTTAGAAAATGGGTGGTTCGGATgttaga
blockSeqs : C A C T G ATATA CATGTAA CT TAAA T TC G A T A C GATTGT A A GGA C GG CG A TAACAACTGTACACTATGCAGTAT ACTGTG A TT G T A T CTTCAG TTACG T G TGATTG TTT GT G T T T T CT GAGTCCTCTGTG TAA CC TACAT T AT T GATCGGC TT C . . T TGTCTGT . . T CA T GA TA A A TAC CAGAGCC T A C GTCG A AAA CAC G AACATTTTTTTT . TAAAA C T ACG ATGT G CCCG A G T G GA GT
blockSeqs : C A C T G . TAAC CT T . T . . . A C CA . . A C AG . . T . . . A . N T . TA . G TATG TT G G C T T T . . . . . . . . GATGGC . C . . T TGT . . . C T TA TA A . AC ATGCG . T . T . . TGC G CATCTTGTTG . TAAAA A T TCG . A TGA . . G C AA .
blockSeqs : C . C A C . AAT TA T . T . . . C G CA . . A A AG . . T . . . A . G T . C . G TGT T A G C T T T . . . . . . . . . . C . . T TG . . . A T GA TA G . . TGTCA . C . . . . TGC G CACTTGTGCC . TA G . ATG . T CCA . . T A AC .
blockSeqs : A G G . AT CA . . T . . . C G GA . . C A CG . . T . . . G . G T . . . G T C G G C T . G . . . . . . . . . . . . . T T . . . A C GA TA G . . TGCCA . A . . . . AGC G AACTTGTTG . TG C . GTG . T CCA . . T G AG .
blockSeqs : A . A TA . . C . . . A C GG . . A T T . . T . . . G . G . . . . . . T G . . . . . . . . . . . . . . . . . . . . . . . A C G TA G . . CACTG . A . . . . TG T CACTTGTTT . CA C . GC . G CTG . . G T G .
blockSeqs : . . . . . C A GG . . G T . . . A . . . . . . . . . . . . C T . C . . . CATG . T . . . . GT T TAATT . CA A . CC . G CTG . . T A T .
blockSeqs : . . . . . . G GA . . . . . . . . GTCA . T . . . . T . TAATT . TG A . TG . G CC . . . G . .
blockSeqs : . . . . A . . . . T . TT . C A . T . . CG . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqCons : AAT***** CA GA**** T*********************** T**** TGT**** G* ** TGT**** *** G* NACTTGTTT************** ***** AA
originalCons : ATTCATTCAAAGACGCACCTTTAAAACANAGCTATTATGCCACACTAAGGATTAATC-----CATA-AAT----TTCAAAAAT---CGAA-TGGA-CAAACAGATGATTGAGGTG-AA-GGTCGTTTACTAAAATTTC-GGAACGGCATTGAGA----TGTTTTG-ACAAAACG-AAATT--AATNCTGCCNGTACTATAC--ATAT-GCATG-----------------------TCCGCATAATACGTA------ATTTCATG-GG--TGTAGGAAA-GGTGTAAATTA------TAAT---CGAAAAA-AGAACTTTAGGTTTGTG-T---TAAA--T-AAAG-TGTCATACTGGTTTATTCCTTTTCAAAACGAAC--TGAT------------GATGCAATAT---TTTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATAA--TTA-TGACGTGAAATAAAAACAAATTCTGGT-------TA--AATGTTTAAACGA-TG--ATGTATT----TGTGATTAATGA-ACACTG---AT-G-AATACGGATTAAAG-TGGA-TTTATT---GTTC---GCCGTTGAC-TGCTTTACCNCCTG-AAAA----T-ATG---TAAGTGCCTGAAAATC--------A-C---TTGT-T-TACTAT-----TATTTTC---GCTNAAA-ATNCGTT----CCGACC-GAAAT-TCA-GTCGGAACTAGCTCGTTANAAAATGG--GGTTCGGAT
finalCons : ATTCATTCAAAGACGCACCTTTAAAACANAGCTATTATGCCACACTAAGGATTAATC-----CATAAAT-----TTCAAAAAT---CGAA-TGGA-CAAACAGATGATTGAGGTG-AA-GGTCGTTTACTAAAATTTC-GGAACGGCATTGAGA----TGTTTTG-ACAAAACG-AAATT--AATNCTGCCNGTACTATAC--ATAT-GCATGT-----------------------CCGCATAATACGTA------ATTTCATG-GG--TGTAGGAAA-GGTGTAAATTA------TAATT----AAAAA-AGAACTTTAGGTTTGTGT----TAAA--T-AAAG-TGTCATACTGGTTTATTCCTTTTCAAAACGAAC--TGAT------------GATGCAATAT---TTTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATAA--TTA-TGACGTGAAATAAAAACAAATTCTGGT-------TA--AATGTTTAAACGA-TG--ATGTATTTGT----GATTAATGA-ACACTG---AT-G-AATACGGATTAAAG-TGGA-TTTATT---GTTC---GCCGTTGAC-TGCTTTACCNCCTG-AAAA----T-ATG---TAAGTGCCTGAAAATNACTTGTTT--------------ACTAT-----TATTTTC---GCTNAAA-ATNCGTT----CCGACC-GAAAT-TCA-GTCGGAACTAGCTCGTTAAAAAATGG--GGTTCGGAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCTCGCCGCTGAAAAAGCCAATTTTGGTACGGGTTGTTTAAAGGACATTCAAAGCTTTATCCTTGTAACAAATGTTTATCGCCAATCAAAACAATATTCAAA
Unaligned ( gi|18 ): CCATCGAAATGGCCGATTTTGATATGGGCTGTTTAAAGAACATTCAAAGCTCTATCATT
Unaligned ( gi|19 ): AGAGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGAGTA
Alignments
lowQualScore : 22222 22222222 1111 1 11 111111 666666666666666666666666 111111 8888888888888888888888888888888888888888888 333333 11 1 333333333333 111 11111 3333333 2222222 111 111 11111111 1111 2222222222222222222222 11111 22222 111 1111 1111
lowQualScore : 2 3 5 0 0 3 2 00000 00000000 77 9999 0 0 33 0 5 5 0 5 2 1 000000 5 5 777 2 33 99 6 555555555555555555555555 2 999999 6 99 1 6 3333333333333333333333333333333333333333333 6 1 6 666666 55 77 2 1 3 8 99 444444444444 111 99 66666 6 99 6 5555555 77 6 6 99 3 7777777 5 000 5 77 1 44 11 88 4 0 333 88888888 4 4 4 2222 4 777 0 888 6 4444444444444444444444 11111 22222 2 8 444 8888 8 0000 4 4 0 5 0 0 9999 66
lowQualScore : . . . . . . . ..... ........ .. .... . . .. . . . . . . . ...... . . ... . .. .. . ........................ . ...... . .. . . ........................................... . . . ...... .. .. . . . . .. ............ ... .. ..... . .. . ....... .. . . .. . ....... . ... . .. . .. .. .. . . ... ........ . . . .... . ... . ... . ...................... ..... ..... . . ... .... . .... . . . . . . .... ..
lowQualScore : 5 2 0 8 8 3 5 00000 77777777 33 0000 0 2 55 1 0 0 2 0 5 4 999999 0 0 666 8 77 22 7 222222222222222222222222 5 222222 7 22 0 7 8888888888888888888888888888888888888888888 7 8 7 888888 88 77 5 0 2 0 22 222222222222 777 22 77777 7 22 7 0000000 99 7 7 22 5 3333333 7 000 7 00 4 44 00 44 4 8 999 00000000 0 9 0 5555 4 888 8 666 7 6666666666666666666666 11111 55555 4 0 777 5555 2 9999 0 0 7 7 9 7 8888 99
consensus : ATTCATTCAAAGACGCACCTTTAAAACANAGCTATTATGCCACACTAAGGATTAATC-----CATA-AAT----TTCAAAAAT---CGAA-TGGA-CAAACAGATGATTGAGGTG-AA-GGTCGTTTACTAAAATTTC-GGAACGGCATTGAGA----TGTTTTG-ACAAAACG-AAATT--AATNCTGCCNGTACTATAC--ATAT-GCATG-----------------------TCCGCATAATACGTA------ATTTCATG-GG--TGTAGGAAA-AGTGTAAAT-----------TA------TAAT---------------T----AAAAAA-GAACTNTAGGTTTGTG-T---TAAAT--AAAG-TGTCATACTGGTTTATTCCTTTTCAAAACGAAC--TGAT------------GATGCAATAT---TTTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATAA--TTA-TGACGTGAAATAAAAACAAATTCTGGT-------TA--AATGTTTAAACGA-TG--ATGTATTTGT----GATTAATGA-ACACTG---AT-G-AATACGGATTAAAG-TGGA-TTTATT---GTTC---GCCGTTGAC-TGCTTTACCNCCTG-AAAA----T-ATG---TAAGTGCCTGAAAAT--------NAC---TTGT-T-TACTAT-----TATTTTC---GCTNAAA-ATNCGTT----CCGACC-GAAAT-TCA-GTCGGAACTAGCTCGTTAA--AAAATGG--GGTTCGGAT
Reference ( family-142 ) : ATTCATTCAAAGACGCACCTTTAAAACANAGCTATTATGCCACACTAAGGATTAATC-----CATA-AAT----TTCAAAAAT---CGAA-TGGA-CAAACAGATGATTGAGGTG-AA-GGTCGTTTACTAAAATTTC-GGAACGGCATTGAGA----TGTTTTG-ACAAAACG-AAATT--AATNCTGCCNGTACTATAC--ATAT-GCATG-----------------------TCCGCATAATACGTA------ATTTCATG-GG--TGTAGGAAA-GGTGTAAAT-----------TA------TAAT---------------T----AAAAAA-GAACTTTAGGTTTGTG-T---TAAAT--AAAG-TGTCATACTGGTTTATTCCTTTTCAAAACGAAC--TGAT------------GATGCAATAT---TTTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATAA--TTA-TGACGTGAAATAAAAACAAATTCTGGT-------TA--AATGTTTAAACGA-TG--ATGTATTTGT----GATTAATGA-ACACTG---AT-G-AATACGGATTAAAG-TGGA-TTTATT---GTTC---GCCGTTGAC-TGCTTTACCNCCTG-AAAA----T-ATG---TAAGTGCCTGAAAAT--------NAC---TTGT-T-TACTAT-----TATTTTC---GCTNAAA-ATNCGTT----CCGACC-GAAAT-TCA-GTCGGAACTAGCTCGTTAA--AAAATGG--GGTTCGGAT
gi|1 : CGCAC-TTTAA------GCCATGATGCCACACTAAGGATTAATC-----AATA-AAT----TT--AAAAT---CGAAGTAGA-CAA-CAAATGAAGAAGGTG-GA-GGTCGTTTCCTAAAACTTT-GCAAAGACATTGA--------TTTTG-ACAAAACG-AAATT--GATACTGTCAGCACTATGA--ATAT-GCATA----------------------------AT--TACGTA------ATTTCATG-GG--TGTAGGAAA-GGTGTAAAT-----------TA------TAAT---------------TG---AAAAAA-GAACTGTA--TTTTAG-TAAGTAAAT--AAA------AGACT---------CCTTTAAAAATAAAC--TGAT------------GAATCAATAT---TTTCGTTTCCCGAAAA--AA-----G-ACTTGCAAAACAA--TTA-TGACGTGAAA
gi|1 : aatcctcactgctgaaaaggccacttttgatatggattatttaaagaacgttcaaagctttatcagtaattaatggtcatcaccaaacaataatA-TTTATT---GTTC---GCCATTGAC-TGCTGTACTTCCTG-AAAA----T-ATG---TAAATGTCTGAGAATCACTACAATAC---TTGT-TCTATTACATTTGTATTTTC---TCTCAAA-ATATGCT----CCAATT-AAAAT-TCA-GTCGGAACTAGCTCGTT-A--AAAGTGG--GTTTGGGATatttattgttcgccattgactgctgtacttcctgaaaatatgtaaatgtctgagaatcactacaatacttgttctattacatttgtattttctctcaaaatatgctccaattaaaattcagtcggaactagctcgttaaaagtgggtttgggatgtttgagtatgaggtttatgtaaggaacattaaccaaggctctaaattgttggagcaggacgcg
gi|10 : aatcctcactgctgaaaaggccacttttgatatggattatttaaagaacgttcaaagctttatcagtaattaatggtcatcaccaaacaataatcgcactttaagccatgatgccacactaaggattaatcaataaatttaaaatcgaagtagacaacaaatgaagaaggtggaggtcgtttcctaaaactttgcaaagacattgattttgacaaaacgaaattgatactgtcagcactatgaatatgcataattacgtaatttcatgggtgtaggaaaggtgtaaattataattgaaaaaagaactgtattttagtaagtaaataaaagactcctttaaaaataaactgatgaatcaatattttcgtttcccgaaaaaagacttgcaaaacaattatgacgtgaaaACATAGTTGCTCTGCCACACTAAGGATTAATT-----TATA-CATGTAATTCTAAAAT---CGAA-CTGA-TCAACTAGTGATTAAGGCG-AA-GGTCATTTACTAAAATTTC-GGAACGGAATTCACA----TGTATTG-ACAAAACG-AAATT--AATCCTGCCGGTACTATgtttgagtatgaggtttatgtaaggaacattaaccaaggctctaaattgttggagcaggacgcg
gi|11 : ATTCATT--AAAACGCACCTT-AAAACATAGCTATTATGCCACACTAAGGgtaaa
gi|12 : tctcgccgctgaaaaagtcaattttgatatgggttgtttaaaagaagcattcaaagatttatcttaacaaatgttatcaacaatcaaataatcagtCACTCA--GACATACCTCTAAAACAAAGTGATTATGCCATA
gi|13 : tctccgctgaaaaaaccaattttggtatgggttgtttaaagagcattcaaagctttataatgaacaaatggtcatcaccaatcaaatattcgttatttaTCAAAGATGGA-TTTATT---GTTA---TGCGTTGAC-TGC-TTACCACTAG-TAAA----TAATG---TGAGT--CTGAAAAC--------ATC---TTGT-T-GGCTAT-----TAATTTT---ACTCAAATATGC-TT----CCGATG-AAAAT-TCA-GT-GGAACAAAC-AGTTGACCAAAATa
gi|14 : TGCCACACTAAG-ATTAATTATATACATGTAAC----TTCTAAAAT---CGAA-CGGATCAAACTAGTGAT-AAGGCG-AAAGGTCATTTACTAAAATTTC-GGAACGGAATTCACA----TG-TTTG-ACAATACGAAAATT--AATCCTGC
gi|15 : ctcC-TGCTTCACCTTCTT-AAAA----T-ACAAAATAAGCACCT-AAAAT--------AACATTTTTT-T-TACTAT-----CATTT--------AAAATATACGTTATGTTCAACCCGAAAT-TCC-GTCGGAACTGACACGTT-G--AAAATGA--GGTTTGGAT
gi|17 : TTTT---GCTGAAA-ATCC-TT----CCTACC--AAAT-TTA-GTTGGAACGAGTTCCTTGA--AAAATGG--TGTTCGtgtta
gi|2 : TA-AAT----TTTAAGAA----CGAA-TGGA--AAACAGATGATTGAGATGGAA-GGTCTTTTATTAAAATTTT-GAACCGGCATTGAGATTGTTATTTTGAACAAAAAG-AAATTGGAGTACTGCCAGTACTATACCGATATAGCATGTAACAACTGTACACTATGCAGTATCCG-ATAATACGTAACTGTGATTTTATG-GGTTTGTAAAAAATAATG--AAT-----------TACTTCAGTCAT---------------TTACGAAAAAC-GAACTTTAGGATTGTGATTG-TAAAT--AAAG-TGTTATACTGA-TTATTTC-CTTCAAAACGAACCTTAATGAGTCCTCTGTGGATGCTATGTTAATTTCGTTTTCTTGAAACCAC-----G-ATCTGCAAAAAAAATCTATTGACGTGAAATAAAAACAAACGCTGAT-------TA--AATGTTTAAACAATTGATATGTAATTGA----AGATAATGAGGCA-TGTCAAT-G-CATATGAAT--AAA-TGGA-CC--TT---GTTCAGAGCC-TTGA--TG--TTACTCCCTG-AAGA----
gi|3 : ttcgccgctgaaaaggacctattttgatatcgggttatttttaaatagaactttcaaagctttatcattagcacaacttggttatacaccaatcaaataatcaatattcactgaaatattttttATTCATTCAAAGATGCACCTTTAAAATAGAGCTGTTTTGGCACACTAAGCATTAATC-----CATA-A-T----TTCAAAAA----CGAA-TTGC-TAAACGGATGATTGAGGTA-AA-GGTCGATTATCAAAGGTTT-GGAACGACATTGAGA----TGTTTTG-ACAAAGCG-AAATT--CATACTGCTAGTACTATAC--ATAT-GCATG-----------------------TCCGCATAGTACGTT------ATTGCATA-TG--TATAAGNNN-NNNATACATATGCATGTCCGCA------TAGTACGTTATTTCATATGT----ATAAGA-AAGCTATA-ATTTATT-C---AAAAC--AAAA-T-------TGGTTTATTCC-TTTCAAAACGAAA--TGAT------------GATGTAATAT---TTTCGTTTACTGAAAA--AC-----G-ATCCGCAAAATAA--TTA-TGACGTGAAATAAAAACAAAGTCTGGT-------TA--AATGTTTAGACGA-TG--ATGTA--TGT----GATTGATGA-GAACTG---AT-GCAATATGGATTAAAA-TGGA-TTTATT---GTTT---GTCATTGAC-TGCTTTATCATATG-AAAA----T-ATG---TAAGTG-CTGAAAAT--------AAC---TTGT-T-GACTAT-----TATTTTC----------------TT----CCTA----AAAT-TCA-GTCACAACTAGCTCATTAc
gi|4 : tcacaaatcaaataatcgttGAA-TGAA-TGAACAGATGATTCAGGTG-AA-GGTAGTTTACTAAAATTTC-GGAATGGAATTCAGG----TGTTTTG-ACAAAACG-AAATT--AATTTTGCCCGTACTATAC--AGGT-ACATG-----------------------TCCGCATAATACGTA------ATTTCATG-GG--TGTAGGAAA-AGTGTAAAT-----------TA------TAAT---------------T----AAAAAAAGAACTCCAGGTTTGTG-T---TTAATTTAAAG-TGTCATATTGGTTTATTCCTTTTCAAAACGAAC--TGAT------------GATGAAATAT---ATTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATTT--TTA-TGATGTGAAATAAAAACAAATTCAGGT-------TA--AATGTTTAAACGA-TG--ATGTATTTGTCTGTGATTAATTT-ACACTG---AT-G-CATATGTATTAAAG-TGGA-TTTATT---GCTT---GCCATTGAC-TGCTTTAACACCTG-AAAA----T-GTG---TAAGTGCTTGAAAAT--------CAC---TTGT-T-TAATAT-----CATTTTC---ACTCAAA-ATTCGTT----CCGACC-AAAAT-TCA-ATCGGAACTAGCTCGTTAA--AAAATGG--GGTTCGGGTgcccgaggtatataagggacgttaacat
gi|5 : attcatttgaagagcatatttcataaaactaccggagggacagagtgttatttaccagaatgttccacttaacgga-TGGA-CAAA-AGATGATTGAGGTG-AA-GGTCGTTTACTAAAAT---------------AAGG----TGTTTTG-ACAAAACG-AAATT--GAATCTGCCT-TATTATAC--ATAT-GAATG-----------------------TCCGCATAATACGTA------ATTCCATG-GG--TGTAGAAAA-AGTGTAAAT-----------TA------TAAT---------------A----AAAATA-GAACTTCAGGTTTGT-------AAATT-AAAG-TGTCATACTGGTTTATTCCTTTTCAAAACGAAC--TGAT------------GATGCAATAT---ATTCGTTTTCTGAAAA--AC-----G-ATCTGCAAAATAG--TTA-TGATGTGAAATAATAACAAATTCCGAT-------TA--AATGTTTAAACGA-TG--ATGTATT--T----GATTAATGA-ACACTG---AT-G-AATATGGATTAAA-----A-TTTGTC---A-----------TGAC-TGCTTTACC-CCTG-AAAA----T-GTG---T-AGTGCCTGAAA---------------------T-TACTAT-----TATTTTC---ACTCAAA-ATATGTT----CCGACC-AGAAT-TCA-GTCG------------------AAATGG--GGTTAGGAT
gi|6 : tATTCATTCAAAGACGTACATTTAAAACAAAGTTCTTATGTCACACTTAGGATTAATC-----CATA-A-------TTAAAAATAAACGAATTAGA--AAACAGG----TGAAGTT-TT-GGTCGTTTA-TGAAACTTCTGGAACGGCAATGAGA----TTTTATG-ACAAAACG-AAAT--------TGC-------ATGT--ATAT-GCATG-----------------------ACCGCATAATAAGTA------AGTTCATGAGG--T-TGAGAAA-GGTATAAAT-----------TA------T------------------------CAGAA-GAACTTTGGGTTTATA-TG--TAAAT--AAAGTTGTCATACTGGTTTATTCC-TTGCAAAACGAAC--TGAA------------GATACAATAG---TTTCGTTTTCTGAAAA--ACTACATGTATCTGCAAAATAA--TTA-TGACATGAAATAAAAACAAATTTTGGT-------CA--ACTGTTgttaga
gi|7 : aactctccgttgaaagggccaattgtatatgggtcttttaaagagtatttatcaatcactaatcaaataatcgttGTCAAACAGAAACAAATTCTGGTGATGGC-TA--TACATTTCAA-AA-TA--ATTTATTTG------ATTAATGA-ACACTG---CT-G-AATACGGATC-AAG-TGGA-TTT-TTAC-GTTC---ACTGTTAAC-TGCTTTGTCTACTG-CAAA----T-ACG---TAAG-GTCTTAAAAT--------TAA---TT-------CTGT-----TTTCTTTAAAACTAAAA-ATGTGTT----CC-ACT-GAAAT-TCA-GTTAAAACGAGTTATTTAC--AAAATGA--GGCTCGGAT
gi|8 : GAGGTCAAACCGAAACAAATTCTGGTGATCGGCTATTAATTTCCAAA--A-TA--ATTTATT-------GATTAATGA-ACACTG---CT-G-AATACG---TA----TGGA-TTTATTTACGTTC---A-TGTTAACTTGCTTTGTCTACTGCAAAAGTCGC-ATA----AAGT--CTTAAAAT--------TAA---TT-------CTGT-----TTTCTTTAAAACTAAAA-ATT--TT----CC-ACT-GAAAT-TCA-GTTAAAAC--GATTATT-T--ACAATGA--GGCTCGGATgttaga
gi|9 : AATGA-ACAC-G---ATTG-CAT-TGG-TTAAAG-TGGAATTTATT---GTT----GTCATTGAC-TGCTTTACAACCTG-AAAAT---T-GTG---TCAGAGCCT-AAAAT--------CAC---TTGTGC-CACTAT-----TATTTGT---GATAAAT-ATT-GTT-----CGA-C-GCAATATCAGGTCGG-ACTAGCTCGTTAG--AAAATGGGTGGTTCGGATgttaga
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCTCGCCGCTGAAAAAGCCAATTTTGGTACGGGTTGTTTAAAGGACATTCAAAGCTTTATCCTTGTAACAAATGTTTATCGCCAATCAAAACAATATTCAAA
Unaligned ( gi|18 ): CCATCGAAATGGCCGATTTTGATATGGGCTGTTTAAAGAACATTCAAAGCTCTATCATT
Unaligned ( gi|19 ): AGAGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGAGTA