lowQualScore                  :                    11    1           444444444444                    2               1           11  2          2        2        22    1    333333              11        888888888888888888888888888888888888      3333          333                         44444                    11         11      4444444444444444444444444444444              55555                   6666666666      222                   11                 11   11    2222                      1                33333     111     444   1111      1111111         2222222  1    11     11   55555555555555555555                                   222     11      33333333333    2222                    2222                  111     1111         22222222     66666666666666666666666666666666666666666666                                                             111      1         1   2  111         1                   1                  33333                  3333333333333333               55555555555    1      222222    111111               111111               11    1111      111111111      333     111       2222222                        
lowQualScore                  :                    33    0        0  444444444444    66              7        4  55  5    2  4   77  0          0     4  3    2   44  3 5    777777     4        77  2 3   999999999999999999999999999999999999      3333          000  4 4  66                11111     4 3      3  1  88  4      88   4  5555555555555555555555555555555   7    6     66666  3  7        4    0000000000      333      0 4     55   33  0    0 3    0  00   44    4444              0     0 0       22 6 6   99999     333   5 222   4444   7  5555555   44  2 3333333  0  3 33 0 0 33   66666666666666666666   6  99  2  6     1     22        666 1 6 11      88888888888    2222  11  0 6     1  8  8888  0     8 11   8  111  5  6666   0   8 22222222     22222222222222222222222222222222222222222222 6        8         8 5         1 1  1     1     4   3    2  555   6  0  4 6    8   0  111   0 88  0 3  99      777    6         5        44444  0          7  1 0000000000000000         88 6  77777777777    3  77  333333    222222          6    999999 6    2 2      22    4444  7   444444444  2   666     888       8888888      8  0              
lowQualScore                  :                    ..    .        .  ............    ..              .        .  ..  .    .  .   ..  .          .     .  .    .   ..  . .    ......     .        ..  . .   ....................................      ....          ...  . .  ..                .....     . .      .  .  ..  .      ..   .  ...............................   .    .     .....  .  .        .    ..........      ...      . .     ..   ..  .    . .    .  ..   ..    ....              .     . .       .. . .   .....     ...   . ...   ....   .  .......   ..  . .......  .  . .. . . ..   ....................   .  ..  .  .     .     ..        ... . . ..      ...........    ....  ..  . .     .  .  ....  .     . ..   .  ...  .  ....   .   . ........     ............................................ .        .         . .         . .  .     .     .   .    .  ...   .  .  . .    .   .  ...   . ..  . .  ..      ...    .         .        .....  .          .  . ................         .. .  ...........    .  ..  ......    ......          .    ...... .    . .      ..    ....  .   .........  .   ...     ...       .......      .  .              
lowQualScore                  :                    88    0        7  888888888888    55              5        0  55  0    5  0   55  0          0     0  0    5   00  0 0    555555     0        55  5 0   000000000000000000000000000000000000      0000          000  0 0  55                00000     0 7      7  0  33  0      33   0  7777777777777777777777777777777   3    7     77777  7  7        7    7777777777      333      2 0     88   88  2    2 2    2  33   00    7777              7     2 0       66 6 6   00000     888   4 555   0000   8  8888888   00  5 2222222  0  0 88 2 2 88   88888888888888888888   7  22  5  7     0     44        666 4 6 44      22222222222    8888  44  8 8     4  0  8888  6     0 88   0  888  0  8888   8   0 44444444     22222222222222222222222222222222222222222222 4        0         0 0         4 4  4     4     0   2    5  888   7  3  0 7    0   0  777   7 88  8 7  22      777    0         2        33333  3          3  0 3333333333333333         88 7  00000000000    3  33  555555    222222          7    222222 7    8 2      55    2222  5   555555555  2   777     222       0000000      0  8              
consensus                     :   TCAAAATGTTTGCTGCA--GGGT-GTATTCCTAAC---GGATGGGGTCCCCGNATTTGCTGCTTGTGTACCCTCACNCGNNCAGCTAANTTNGTTCCGGGTCTGTCCTATTGTAGTNTTTTCCGNAGGNTGGNACAAGTTCGCGACAGTANATTAAATTCCTGNANTTACA-GACATATTCGCTNGAAATGGTGACTCTTAACNNTTTACCACGGATTTGAGAGTTTNAANGNACGNCCTGTTTTTAAATAAGNAG--CAGGTNCCGCAACGNGGGTC--CANACATTT--GGANAC-GCAG---TTTCTCCT---TCAACGAT-T--AAAATTTGGCTCTTC-A--GTNAGNAGTTTCTTNAGATT----GG---TTGACG---TCGACTGTNGATAATGTTC--CTCATTTCAATGACGCTCCTTAA-ATTTCTCGGATTGTTGTAAAATCGGAAAGC-ATTGTTTAGCTGTATT-ANACATGTTGTGATTCC-NTGGATT--GTGNGTN-ACGA-CGAAAGGNA--T-T--TG-TTNT--TCTGA--TTTTATCCTGAGTTT--CTGACTTTC-TG--GANTT-CCGAAGTTCCGAGATTGGTATAGATCTTGCCTTTTCT------ATTCCAGCGATA-TCTATTAAGTTTTTCGG-ATAGTGTTTCTGTC-TAAGTA-AA--AATNTTNT--TAATTCC-TC-TAGAC-TTTATTC--CTTC--TGT----TTTCAT-C-AA-C-----------G--ACGATGGTGC-AAATACGTC-TGGCCATGTTAAACGGTATGTTGCGTTTNGCGTGTGANGGG--TGA-CANGANT-TGAATATCTAG---GTATTGATGNGAGT--CCGTTT-TTTTGC-GTATAAATCNGTTGTAATGCGNNTGTCTTCTTTTATNACGA--GA----AT------ATCCAGAAAN-G-GT---T-------TTCT-GTACTGCTTG-NTTCC-A--TCGTGAATTGAA-TCGAN---NNA-TGTAGATTGTTCAA-ATAT----TGTGAA---AGT--TTTTTAA---ATCTTCGTGTGATTT---GT--CCAAAA-AATGAAACAATCGTCTA
Reference ( gi|4 )            :   TCAAAATGTTTACTGCA--GGGT-GTATTCCTGAC---GGATGG---TCCCGTATTTGTTGCTTGTGGACTCTCACACGGTCAGCTAACTTAGTTCCGG-TCTGTCCTAT-GTAATTTTCTCCGCAGGA-GGTACAAAT-CATG-CAATATATTAAATTCCTGGATTTACATGACATATTCGT-CGAA-TGGTGA-----AA-GTTTTACCAC--ATTTAAAAGT--GAAAGTATCTCCTGTTTTTAAATAAGGG---CAGGTACCACAACGGGGATC--CATACATTT--GGAAACTGCAG---TTTTTTCT---TCAGTGGT-TG-AAAATTTGGCTCTT-----GTCAGTAGTTTCTTTAGATT---AGGAGGTTGACG---TCGACTGTAGATAATGTTC--CTCATTTCAATGATGCTCCTTAG-ATTTTTCGGATTGTTGTAAAATCGGAAAGC-ATTGTTTAACAGAATT-ATA-ATATTAATATTAC-G-GGATT--GTGAGTT-ACGA-CGAGGGGGA--T-T--TG-TTTT--TCTGA--TTTCATCCTGAGTTC--CCGATTTTC-TG--GAGTT-CCGAAGTTCTGAGATTGGTATAGATCTAGCCTTTTCT------AT---AGCGATA-TCTATTAAATTTTTCGG-ATA---TTTCTGTC-TAAGTA-AA--AATGTTGT--TAATTCC-TG-TAGACGTTTATTC--CTTC--TGT----TTTCAT-C-AA-C-----------G--ACGATGGTAC-AAACACGTC-TCGCCATGTTAAACGGTATGTTGCGTTTAACATGTGAGGGA--TGA-CAAGAAT-TGAATATC-AG---GTACTGGTGCGAGT--CCGTTT-TCTTGTAGTATAAATCCGTTGTAATTTTCCTGTCTTCTTTTATTACGA--GG----AT------ATCCAAAAAA-G-GT---T-------TTCT-GTGCTGCTTG-TTTCC-A--CCGTAAATTGAA-TCGAG---GGA-TGTAAACTGTTCAACATAT----TGTGAA---AGT--CTTCTAA---ATCTTTATGTGATTT---GG--CCAAAA-AATGAAACAATCGTCTA
gi|16                         :   TCAAAATGTTTACTGCA--GGGT-GTATTACTAAC---
gi|5                          : aaaCAAAATGTTCGCTGCA--CGGG-GTGTTCCTAACACTGG--GA---TCTTTAATTTGCTGTTTATGTACCCTCACTCGCGCA-TTAAGTTTGTT--GG-TTTGTCCTAT-ATAGTATTTTCCAAAGGTTGGGA-AAGT-GGCA-CAGTAAATTAAATT--TGCAGTTA--------AT-CGC-GGAA-T--TGACTCTTAA-TATTTACC-CGGATTTGAGAGT--TAATGAATCACCTTCTTCTATATATCCA---CATGTCCTGCACCGTGGGTCACCACATTTTT--TGACAC----A---TTTCTCCTGATTCAGCGAT------AATTTGGCTCTTCTA--GTTAGGAGTTTTTTAAGGCT---TAGCTCTTGACG---TCGGCTTTTGATAAT-TTCTGCTAATTTTA-TAACATT--TTAATATTGTT-GGATTGTTATAAAATTGGAAAAT-ATCGTTTACCTGTATT-CGAGATATTGTGGTTCC-TTGGATT--ATGTGTG-ATAA-AGAAAGGTACAT-TAATG-TTGTCATTTGA--GTTT-TTCTGA------CTGATTTTC-TG--GAGTT-CCAAA---------TTGGTATTTTTTCTGCTTGTTGG------ATTCCAGCG----TTGATCAGGTTTTATGG-GTAGTGTTGTTGTC-T---TA-AATGAATCTT----TAATTCC-TC-TA-ATCTCTATCTATCTT---TGC----CTTTATAT-AA-TATTGAATAGGTG--ATGATGCTGC-AAATATGTC-TGAGCATATTGTTTGAAATATTATGTTTTGTGTGTGACGG---TGA-CATGATC-TGAA-ATCTAG---ATATTGATGAGTGT--CCGTTT-CTTTGCTGTATAAATCGGTTGTAATGAGAGTGCCCTCTTTTATGATAA--AC----AA------ATCCAGAAAT-G-GTGTAT-------TTTTAGTATCG---G-ATTCC-A--TTGTGAATTGGA-TTGAT---TCA-TGTATATTATTTAA---AT----TG-GAA---TGTAATTATTGACG-ATCCTCGTGGTATTTC--GT--CCAGAA-AATGAAGCAATCATCTA
gi|14                         :  cgCAAAATGTTTGCTGCACTGGGT-GTa
gi|3                          : tcaaAAAATGTTTACTGCA--GGGTCGTATTCCTGAC---GGATGGGGTCCCCGTATTTGTTGCTTGTG-ACTCTCACACGGTCAGCTAACTTAGTTCCGGGTCTGTCCTATTGTAATTTT-TCCGCAGGA-GGTACAAATTCATGACAATATATTAAATTCCTGGATTTACA-GACATATTCGTTCGAAATGGTGA-----AACGTTTTACCAC--ATTTAAAAGTTTGAAAGTACGTCCTGTTTTTAAATAAGGGG--CAGTTACCACAACGGGGATC--CATACATTTTGGAAAACTGCAG---TTTT--CT---TCAATGGTGTGGAAAATTTG-CTCTT-----GTCAGTAGTTTCTTTAGATTTAGAGGAGGTTGACG---TCGACTGATGATAA-GTTC--CTCATTTCAATGATGCTCCTTAG-ATTT--CGGATTGTTGTAAAATCGGAAAGC-ATTGTTTAACAGAATT-ATACATATTAATATTACGG-GGA----GTGAGTTAACGACCGAGGGGGA--T-T--TGTTTTT--TCTGA--TTTCATCCTGAGTTC--CCGA--TTCGTG--GAGTT--CGAAGTTCTGAGATTGGTATAGATCTAGCCTTTTCT------AT---AGCGATAGTCTATT-AATTTTTCGGTAT----TTTCTGTC-TAAGTA-AA--AATGTTGT--TAATTCCTTGTTAGAC--TTATTC----TC--TGT----TTTC---CAAA-C-----------G--A-GATGGTACAAAACACGTCTTCGCCATGTTAAACGGTATGTTGCGTTTAACA-GTGAGGGGATTGACCAAGAAT-TG-ATATC-AG---GTACT-GTGCGAGT---CGTTT-TCTT-T-GTAT-AATCCGTTGTAATTTTCCT-TCTTCTTTTATTACGAAGGA----AT------ATCCAAAAAG-GTGT---C-------ATCT-GTGCTGCTTG-TTTCCAA--CCGTAAATTGAA-TCGAG---GGA-TGTAAACTGTTCAACATATATTGTGTGAA---AGT--TTTCTAA---ATCTTTCAGTGATTT---GGACCCAAAA-AA-GAAACAATCGTCTActcacactggttctttaatgtgttttcatgcgacgcacgcacgtacgcat
gi|8                          :                                                                                                                                                                                                                                                   GTTTTGAAAAAAGAAATACAGGTGCAACAACGAAGGCC--CTGACATTT--GGAGACGGTAGATATTTCTTTT---TCAA--AT-TT-AAA-TTTGGCTTTTTAACACTAAGAAGTTTCTTCAAAT----------TTGATGTATTCTACAATACATGATGTCC--TTTTCTTGAATAATTTCCTTTAA-ATTTCTC-GATTGTTGGAGTACTGGGAACCAATTGTTC-GTTGTATTGAAG-ATGTTGTGATTCCTG-GGATT--ATGGGTG-ATGA-CAAAAGGGA--T-T--TA-TCTG--CGTAAAGTTTTA----GA--TT--CTGTCTTTC-TGTTGACTTCCCGTAATTCTGTAATTGGCAT-----TTG-TTTTTCT------TT---TG-GGTA-GCT-TTAA----TTGGG-ATA---TTTTTGAC-GATGGATAT--AATCTTCTTCTAA-TCT-TC-TAATCTTTTAT-----TTCAAAGT----TTT--T-C-AATC-----------GTAACTATGGTGC-AGATGTTCC-TGGCTAAGTTAAAAAGTATGTTCTGTTTa
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                        gTGTAGATAATGTTC--TTCATTTCAATGATGCTcg
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AGC-ATTGTTTAACAGAATT-ATACATGTACATATTAagcattgtttaacagaattatacatgtacatattaattac
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                   tgtagataatgttcttcatttcaatgatgctTGTTTAGCTGTATTCAAG-ATGTTATGATTCC-TTGGATTATGTGTGTT-A--A-CGAAAGGTA--CAT--TG-TTGT--TCTTA--TTT------GAGTTTTTCTGA----C-TG--GTTTT-CCGAAGTTCattac
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              taaTC-TG--GAGTT-CCGAAGTTCTGAGATTGGTATAGATCTAGCCTTTTCT------AT---AGCGATA-TCTATTAAATTTTTCGG-ATA---TTTCTGTC-TAAGTA-AA--AATGTTGT--TAATTCC-TG-TAGACGTTTATTC--CTTC--TGT----TTTCAT-C-AA-C-----------G--ACGATGGTAC-AAACACGTC-TCGCCATGTTAAACGGTATGTTGCGTTTAACATGTGAGGGA--TGA-CAAGAAT-TGAATATC-AG---GTACTGGTGCGAGT--CCGTTT-TCTTGTAGTATAAATCCGTTGTAATTTTCCTGTCTTCTTTTATTACGA--GG----AT------ATCCAAAAAA-G-GT---T-------TTCT-GTGCTGCTTG-TTTCC-A--CCGTAAATTGAA-TCGAG---GGA-TGTAAACTGTTCAACATAT----TGTGAA---AGT--CTTCTAA---ATCTTTATGTGATTT---GG--CCAAAA-AATGAAACAATCGTCTAaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgctgctgcaaatacgtctggccatattgt
gi|1                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TT-TG--AATTT-CCGGAGTTCCAAAATTGGAAT---TTTTG--TTTGCTTGTTGGATTCCAGCG----TTGATCAGGTTTTCTGG-GTAGTGCTGCTGTCATAAATG-AA------TCTT--TAATTCC-TC-T-GA--TCTCTTT--CTAC---GTAACGTTGAAT-C-GG-T-----------G--ATGGTGCTGC-AAATACGTC-TGACCATATTGTATGGAATATTACGTTTTGTGTGTGACGGG--TGA-CATGATC-TGAA-ATCTAG---ATATTGATGGGTGT--CCGTTT-CTTTGCTGTATAAATCAGTTGTAATGCGAGTGCCCTCTTTTATGATCT--GA----ATCAACAAGTCCAGAAAT-G-GT---AGAA----TTCTAGTACTGTCT----TCC-A--TTGTGAATTGAA-TTGAT---TCA-TGTAGATTATTCAAAATGG----AATGAA---A-T--GTTTGAAG--ATCCT--CGTGGTTTTTCGT--CCAGAA-GATGAAGCAATCATCTAaatatcgcttccagttagattttatgtattgcgcaaattgatttccaaataatctgtctgtgttatcaaatatttctcctctaggaatcctagtactagggtagcatatgttggggcgactttatacccatggctgttccttttatttgtaagaatgtttgttgtcgaacataaaatagttattctcgagtactaattttaattcctctaagataaagtctttggaaaatctaggattaatttcgctttggtgttatcgatccagaatgcaattgcttctaatcctaaagtatgtggtatgttgggtatacaagaagtgacatcaaaactaagccattgttggtattcaacctcaactgttctgggaattggctgaggaaatctaaaatcgtccctttatgtagcttgtacaacagttgacagaaaaataaaatggcttaagaagtatgttaataattgctagagtcgtgggtggaacagacgggttccggctaccaattggtcgaagctttaaat
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         tacattgttgttgtcaGGG--TGA-CAGGAAT-TAAACATA-AG---GTATT--TA----T--CTGTCA-ATTTGTAGAACACGTCTGTTACTATGCGGTTGTCTCTTTTAATAACCA--TG----AC------ATC-AAAAAA-G-GA---CAGCATAATTCT-AT--TG---G-ACTCC-A--TGGTAAATT----TCAAGGTAGGA-CTTAGCGTATTAAGAATAT----TGAAAA---ACT--CCGTTAACTGGTCTTC---TCCTCT---GT--CCCAAATAATAAAACAATCGTCCAagtaacgtttccagttttcacgtatgtatttcccaaagtctgcgtcaaatatttccggtaaagtgttatatatcctttcctctattttaaaaattccataaagagtgtggcataggtcggagcgactttggtacccattgcagtccccttagtttggaggtaaaattgtacgttaaattggaaatgattattttctaatacgagtttaagacattagatgatgaagtctttggaaaatctttcattaatttctgtaggatatttctcgatccagtacttaacagcttcattctattcctagatcatgtggaatatttgtatatagactagaaacatcgaaactgacaagaatggtttcgggttgcactgtttttggaatgtaattcaagaaatccatatcatccgaacatagctcggcacttttttacatagaggttttaaaataatgtctaaaagattacttagcctctgcgcgctagaatgaaggtcctgctattatggggcgtaacttgaggtc
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    tgttttGA--TGA-CA-GATTCTGAA-ATCTAGACTGTATTGATTAGAGTGTCCGTTTCTTTTGC-CTATAAATCGATTGTAAT----GTGAGTCCCTCTA--ATGA--GAATATAT------ATCCAGAAAATG-GTAGAT-------T--T-GTAGTACTCGACTTCC-GATTTGTGAATTGAATTCGAT---TCACTGTAGATTGTTTA--ATAT----TGGGAATGCAAT--TTTGGAAGG-ATCTTCATGTaaaaacgtttccatgactgttttaaaaagatatcaaagtcttgtccaaatgtttctcgaactgtagaaaataatttctcttccaaatatcctaaaaccaatgtcgcataagttggggcaactttggtttccatggcagtgcctagcttctgtcttgtaaattttaagttagtttcatctaaaagcatgaaagttctttttccaagattaattttaagacttgatatgacgaattcttaggaaatctctcgtgataaaagatgaggaaaacggtctatccaatattcatggcggctagtccgaggtcatgaggaatatttagaatagaggttcgttgacatcaaatggagactgatatggattccgagttaatttcctctggaaataggtgatctaaaaagtctacggtgtctctgatgtaactctgtactttggtgatgaatggtttcagcaataaatctaagagataactaattctgtgggtttcgcaggtgggtcccgcgacaatgggtctaattttaagatc

Unaligned ( gi|10 ): GTATGTTTTGGGTCGGTGAACAGGAATTAAACAATAACGGTATTGCTTGGTATCTGCCTTCAATTGTAGAACACCGTCTGTATTACGTATGCGGTTGTCTCTTACATACCCATCGGCATCAAGAAAGGACAGCATATTTCTATTGGACTCCATGGTAAATTTCAAGGTAGGACTTAGCGTATTAAGAATATTGAAAAACTCCGTTAACTGGTCTTCTCTGTCCCAACTAATAAAACAATCGTCCAAAAAACGTTTCCA
Unaligned ( gi|11 ): TTATCATATTTGTATACATTGTATATTCAGATTCAGCGAGAAATTTACTGTAGCTAGGAATTTTTTAAAGCCTGATGCCTGACGTCGGCTGGTGATAGTTTGAGCTGCTTTATCTATATTTTCCTTATTGTTGGACTTAAAATCATTTAGCTATATTGAAGATATTGTGATTGTTTGGTTTCTGACAAGCTTTTCCGAAGTCTTGAAATTGGCATATTTTCTGCTTGCTGGTTTCCAGCATCGATAAG
Unaligned ( gi|12 ): AATTGTTCACAGCTTATTACTGACACTTGGATCTGTAATTTGTTTGTGGACCTGAACTCCTACATTAATTTACCAGTTTGCCTGAATATGGAATTTTTTAATGTTGGACAAAAAGCACAAAAGATCTGATTTTCAGTTGATTG
Unaligned ( gi|13 ): TTTCCTCTAAAAATCTCATAAAGTTAATTTAATGAGTGTGGAATAAGTCGAAGTGACTTTGGTACCAATTGCAGTTCCCTTAGTTGGAAAGTAAAA

lowQualScore                  :                                                 11                      11                     1                                          2     1           22         333333                        111          222          5555555555        33          222                         22222                                   222222222222       1111111       333333             333333                      6666666666666666      111                                           22222                1111                                  1                       111111                      1111          111        222222222222   2222      11                                   222             33333333333    11111       1            222                    111                         1111     1111        1111   4444444444444444444444                          1                               11111             1            1   1                             2222222222                    111111                         3333333333333333               555555555    1  11  222                                   111           111    1111  111                  333      22222222   11          1                 
lowQualScore                  :                                                 11    8             7   00     77     0        5  0     1  22  6    1  1   6   6          3   0 4       1   44  1 6  0 777777  0  1        6   1 1   999       7  555   7 6    8888888888      7 00    0 0   888  1 1 888                88888     1 22     1      44   8      1 333333333333  44 2 9999999    6  777777      3      555555  1  1        1 8  8  8888888888888888      444       1     3    99  1    1 3   9   5     00000   77   5       4444        88  3  5         0 0   11 0     77    77  0 99    666666 0  1 6 1  6  6       6666  6 99  6 111 1 99   444444444444   3333      99   5  66  1  5   1     5           222 0 2 99      44444444444    44444 1     1        88  666  77      6666   5  777   3 888 77   1    77    9999     6666   999  2222   3333333333333333333333  77 5        5  5    5   0    888         0         1    11111    1  777   0  5  1 5    3   5 66 888      3  1 6  66      7777777777      888   1  5    444444   7777    22       2  1 0000000000000000      5   1 5  444444444    0  00  111 66    5 66 2       2  5    333 5  777    2    0 666 0  0000  333   888 4 888 0    666      33333333   11 66       0                 
lowQualScore                  :                                                 ..    .             .   ..     ..     .        .  .     .  ..  .    .  .   .   .          .   . .       .   ..  . .  . ......  .  .        .   . .   ...       .  ...   . .    ..........      . ..    . .   ...  . . ...                .....     . ..     .      ..   .      . ............  .. . .......    .  ......      .      ......  .  .        . .  .  ................      ...       .     .    ..  .    . .   .   .     .....   ..   .       ....        ..  .  .         . .   .. .     ..    ..  . ..    ...... .  . . .  .  .       ....  . ..  . ... . ..   ............   ....      ..   .  ..  .  .   .     .           ... . . ..      ...........    ..... .     .        ..  ...  ..      ....   .  ...   . ... ..   .    ..    ....     ....   ...  ....   ......................  .. .        .  .    .   .    ...         .         .    .....    .  ...   .  .  . .    .   . .. ...      .  . .  ..      ..........      ...   .  .    ......   ....    ..       .  . ................      .   . .  .........    .  ..  ... ..    . .. .       .  .    ... .  ...    .    . ... .  ....  ...   ... . ... .    ...      ........   .. ..       .                 
lowQualScore                  :                                                 00    0             3   33     77     7        3  7     0  00  7    0  0   7   7          7   7 0       0   77  0 7  7 333333  7  0        7   0 0   000       3  000   3 7    3333333333      3 00    7 7   333  0 0 333                22222     0 22     0      55   0      0 222222222222  00 8 0000000    4  444444      2      888888  0  0        0 0  0  2222222222222222      000       0     2    22  0    0 2   0   0     00000   22   0       2222        22  0  7         8 8   88 8     99    99  7 33    444444 4  0 7 0  7  7       8888  7 22  7 777 0 22   777777777777   0000      22   0  99  0  0   0     0           000 4 1 66      11111111111    33333 3     1        00  333  99      7777   7  999   0 999 99   4    99    0000     1111   666  1111   3333333333333333333333  99 3        0  0    0   0    888         4         7    88888    0  111   0  9  0 0    1   5 99 888      9  0 9  99      0000000000      888   0  0    444444   4444    99       8  4 5555555555555555      0   0 0  222222222    0  22  888 00    0 99 2       5  0    000 0  555    6    2 000 1  6666  555   888 5 444 2    222      99999999   99 99       0                 
consensus                     :                                TCAAAATGTTTACTGCA--GGGT-GTATTCCTGACGGATGGGGTCCCCGTATTTGTTGCTTGTG-ACTCTCACACGGTCAGCTAACTTAGTTCCGGGTCTGTCCTAT-GTAAT-TTTTCCGCAGGA-GGTACAAAT-CGCGACAATATATTAAATTCCTGGATTTACA-GACATATTCGCTCGAAATGGTGA-----AA-GTTTTACCAC--ATTTAAAAGTT-GAAAGTATCTCCTGTTTTTAAATAAGGAG--CAGGTACCGCAACGGGGGTCCNTACA-TTTGGAGA--C-G-CAG---TTTCTTC---T---TCAGCGAT-TG-AAAATTTGGCTCTT---C-AGTCAGNAGTTTCTTNA-GA-TT--GA---GG---T---TGACGT---CGACTGTNGATAATGTTC--CTCATTTCAATGATGCTCCTTAA-----ATTTTTCGGATTGTTG----TAAAATCGGAAAGCA-TTGTTTAGCTGTATTANAGATGTT--GTGA--TTCCTNGGAT------TGTGNG-TGAC-GA-CGAAAGG--N-AT-T--TG-T---TNT--TCTGA--TTTTATCCTGAG--TTTCCGACTTTC-TG--GANTT-CCGAAGTTCTGAGATTGGTATAGATCTNGCCTTTTCT------ATTCCAGCGATA-TCTATTAAATTTTTCGG-ATAGT-TT--TCTGTC-TAAGTA-AA---AATNTTG-T--TAATTCCT--CTAGAC-TTTATT--CCTTC--TGT----TTTCA---T-C-AAT----------CG--ACGATGGTGC-AA-ATAC-GTC-TGGC---CATGTTGAACGGTATGTTGCGTTTNGCGTGTGANGGG--TGA-CANGAAT-TGAATATCTA--G---GTATTGATGNGNGT--CCGTTT-TC--TTGC-GTATAA---ATCCGT-TGTA------ATGCGNCTGTCTTCTTTTATNACGA--GG----AT------ATCCAG-AAANG-GTAGA---T--TTCT-GTGCTGCTTG-NTTCC-A--TCGTAAATTGAA-TCGAGGNA-TG---TAGACTGTTCA-ACATAT----TG--TGAA---AGT--CTTCTAAC--ATCTTCGTG--TGATTT--G--TCCAAAA-AATGAAACAATCGTCTA
Reference ( family-1292 )     :                                TCAAAATGTTTGCTGCA--GGGT-GTATTCCTAACGGATGGGGTCCCCGNATTTGCTGCTTGTGTACCCTCACNCGNNCAGCTAANTTNGTTCCGGGTCTGTCCTATTGTAGTNTTTTCCGNAGGNTGGNACAAGTTCGCGACAGTANATTAAATTCCTGNANTTACA-GACATATTCGCTNGAAATGGTGACTCTTAACNNTTTACCACGGATTTGAGAGTTTNAANGNACGNCCTGTTTTTAAATAAGNAG--CAGGTNCCGCAACGNGGGTCCANACA-TTTGGANA--C-G-CAG---TTTCTCC---T---TCAACGAT-T--AAAATTTGGCTCTT---C-AGTNAGNAGTTTCTTNA-GA-TT-------GG---T---TGACGT---CGACTGTNGATAATGTTC--CTCATTTCAATGACGCTCCTTAA-----ATTTCTCGGATTGTTG----TAAAATCGGAAAGCA-TTGTTTAGCTGTATTANACATGTT--GTGA--TTCCNTGGAT------TGTGNG-TNAC-GA-CGAAAGG--N-AT-T--TG-T---TNT--TCTGA--TTTTATCCTGAG--TTTCTGACTTTC-TG--GANTT-CCGAAGTTCCGAGATTGGTATAGATCTTGCCTTTTCT------ATTCCAGCGATA-TCTATTAAGTTTTTCGG-ATAGTGTT--TCTGTC-TAAGTA-AA---AATNTTN-T--TAATTCCT--CTAGAC-TTTATT--CCTTC--TGT----TTTCA---T-C-AA-----------CG--ACGATGGTGC-AA-ATAC-GTC-TGGC---CATGTTAAACGGTATGTTGCGTTTNGCGTGTGANGGG--TGA-CANGANT-TGAATATCTA--G---GTATTGATGNGAGT--CCGTTT-TT--TTGC-GTATAA---ATCNGT-TGTA------ATGCGNNTGTCTTCTTTTATNACGA--GA----AT------ATCCAG-AAANG-GT------T--TTCT-GTACTGCTTG-NTTCC-A--TCGTGAATTGAA-TCGANNNA-TG---TAGATTGTTCA-A-ATAT----TG--TGAA---AGT--TTTTTAA---ATCTTCGTG--TGATTT--G--TCCAAAA-AATGAAACAATCGTCTA
gi|1                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TT-TG--AATTT-CCGGAGTTCCAAAATTGGAAT---TTTTG--TTTGCTTGTTGGATTCCAGCG----TTGATCAGGTTTTCTGG-GTAGTGCT--GCTGTCATAAATG-AA-------TCT-T--TAATTCCT--CT-GA--TCTCTT--TCTAC---GTAACGTTGAA---T-C-GG-----------TG--ATGGTGCTGC-AA-ATAC-GTC-TGAC---CATATTGTATGGAATATTACGTTTTGTGTGTGACGGG--TGA-CATGATC-TGAA-ATCTA--G---ATATTGATGGGTGT--CCGTTT-CT--TTGCTGTATAA---ATCAGT-TGTA------ATGCGAGTGCCCTCTTTTATGATCT--GA----ATCAACAAGTCCAG-AAATG-GTAGA---A--TTCTAGTACTGT----CTTCC-A--TTGTGAATTGAA-TTGATTCA-TG---TAGATTATTCA-A-A-AT----GGAATGAA---A-T--GTTTGAAG--ATCCTCGTG---GTTTTTCG--TCCAGAA-GATGAAGCAATCATCTA
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              tacattgttgttgtcaGG--TGAACAGGAAT-TAAACA-ATAACG---GTATTGCTTGGTAT--CTGCCT-TCAATTG---TAGAA---CACCGTCTGTATTACGTATGCGGTTGTCT-CTTACATACCCATCGG-----C------ATCAAG-AAAGG-ACAGCATAT--TTCT-AT--TG---G-ACTCC-A--TGGTAAATT----TCAAGGTA-GGACTTAGCGTATTAAGA-ATAT----TG--AAAA---ACT--CCGTTAACTGGTCTTC--------TCT--G--TCCCAACTAATAAAACAATCGTCCAagtaacgtttccagttttcacgtatgtatttcccaaagtctgcgtcaaatatttccggtaaagtgttatatatcctttcctctattttaaaaattccataaagagtgtggcataggtcggagcgactttggtacccattgcagtccccttagtttggaggtaaaattgtacgttaaattggaaatgattattttctaatacgagtttaagacattagatgatgaagtctttggaaaatctttcattaatttctgtaggatatttctcgatccagtacttaacagcttcattctattcctagatcatgtggaatatttgtatatagactagaaacatcgaaactgacaagaatggtttcgggttgcactgtttttggaatgtaattcaagaaatccatatcatccgaacatagctcggcacttttttacatagaggttttaaaataatgtctaaaagattacttagcctctgcgcgctagaatgaaggtcctgctattatggggcgtaacttgaggtc
gi|11                         :                                                                                                                                                                                                                                                                                                        gtatgttttgggtcATA-TTTGTATA--C-A-TTG---TATATTCAGAT---TCAGCGA-----GAAATTTA---CTG---T-AGCTAGGAATTTTTTAAAGC-CT-------GA---TGCCTGACGT---CGGCTGGTGATA--GTT-------------TGA-GCTGCTTTATCTATATTTTCCTTATTGTTGGACTTAAAATCA-----------TTTAGCTATATTGAAGATATT--GTGA--TTGTTTGGTT------TCTGaaaaacgtttcca
gi|14                         :                            ttatcCAAAATGTTTGCTGCACTGGGT-GTacaagcttttccgaagtcttgaaattggcatattttctgcttgctggtttccagcatcgataag
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                           tcaaTGTAGATAATGTTC--TTCATTTCAATGATGCTctcacactggttctttaatgtgttttcatgcgacgcacgcacgtacgcat
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AGCA-TTGTTTAACAGAATTATACATGTagcattgtttaacagaattatacatgtacatattaattac
gi|16                         : tgtagataatgttcttcatttcaatgatgctTCAAAATGTTTACTGCA--GGGT-GTATTACTAACacatattaattac
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       aaaTC-TG--GAGTT-CCGAAGTTCTGAGATTGGTATAGATCTAGCCTTTTCT------AT---AGCGATA-TCTATTAAATTTTTCGG-ATA---TT--TCTGTC-TAAGTA-AA---AATGTTG-T--TAATTCCT--GTAGACGTTTATT--CCTTC--TGT----TTTCA---T-C-AA-----------CG--ACGATGGTAC-AA-ACAC-GTC-TCGC---CATGTTAAACGGTATGTTGCGTTTAACATGTGAGGGA--TGA-CAAGAAT-TGAATATC-A--G---GTACTGGTGCGAGT--CCGTTT-TC--TTGTAGTATAA---ATCCGT-TGTA------ATTTTCCTGTCTTCTTTTATTACGA--GG----AT------ATCCAA-AAAAG-GT------T--TTCT-GTGCTGCTTG-TTTCC-A--CCGTAAATTGAA-TCGAGGGA-TG---TAAACTGTTCA-ACATAT----TG--TGAA---AGT--CTTCTAA---ATCTTTATG--TGATTT--G--GCCAAAA-AATGAAACAATCGTCTA
gi|3                          :                                  AAAATGTTTACTGCA--GGGTCGTATTCCTGACGGATGGGGTCCCCGTATTTGTTGCTTGTG-ACTCTCACACGGTCAGCTAACTTAGTTCCGGGTCTGTCCTATTGTAAT-TTTTCCGCAGGA-GGTACAAATTCATGACAATATATTAAATTCCTGGATTTACA-GACATATTCGTTCGAAATGGTGA-----AACGTTTTACCAC--ATTTAAAAGTTTGAAAGTACGTCCTGTTTTTAAATAAGGGG--CAGTTACCACAACGGGGATCCATACATTTTGGAAAACT-G-CAG---TT--TTC---T---TCAATGGTGTGGAAAATTT-GCTCTT------GTCAGTAGTTTCTTTA-GA-TTTAGAGGAGG---T---TGACGT---CGACTGATGATAA-GTTC--CTCATTTCAATGATGCTCCTTAG-----ATT--TCGGATTGTTG----TAAAATCGGAAAGCA-TTGTTTAACAGAATTATACATATT--AATA--TTACGGGGA--------GTGAGTTAAC-GACCGAGGGG--G-AT-T--TGTT---TTT--TCTGA--TTTCATCCTGAG--TTCCCGA--TTCGTG--GAGTT--CGAAGTTCTGAGATTGGTATAGATCTAGCCTTTTCT------AT---AGCGATAGTCTATTAA-TTTTTCGGTAT----TT--TCTGTC-TAAGTA-AA---AATGTTG-T--TAATTCCTTGTTAGAC--TTATT--C--TC--TGT----TTTC------CAAA-----------CG--A-GATGGTACAAA-ACAC-GTCTTCGC---CATGTTAAACGGTATGTTGCGTTTAACA-GTGAGGGGATTGACCAAGAAT-TG-ATATC-A--G---GTACTG-TGCGAGT---CGTTT-TC--TT-T-GTAT-A---ATCCGT-TGTA------ATTTTCCT-TCTTCTTTTATTACGAAGGA----AT------ATCCAA-AAAGGTGT------C--ATCT-GTGCTGCTTG-TTTCCAA--CCGTAAATTGAA-TCGAGGGA-TG---TAAACTGTTCA-ACATATATTGTG--TGAA---AGT--TTTCTAA---ATCTTTCAG--TGATTT--GGACCCAAAA-AA-GAAACAATCGTCTAaatatcgcttccagttagattttatgtattgcgcaaattgatttccaaataatctgtctgtgttatcaaatatttctcctctaggaatcctagtactagggtagcatatgttggggcgactttatacccatggctgttccttttatttgtaagaatgtttgttgtcgaacataaaatagttattctcgagtactaattttaattcctctaagataaagtctttggaaaatctaggattaatttcgctttggtgttatcgatccagaatgcaattgcttctaatcctaaagtatgtggtatgttgggtatacaagaagtgacatcaaaactaagccattgttggtattcaacctcaactgttctgggaattggctgaggaaatctaaaatcgtccctttatgtagcttgtacaacagttgacagaaaaataaaatggcttaagaagtatgttaataattgctagagtcgtgggtggaacagacgggttccggctaccaattggtcgaagctttaaat
gi|4                          :                                TCAAAATGTTTACTGCA--GGGT-GTATTCCTGACGGATGG---TCCCGTATTTGTTGCTTGTGGACTCTCACACGGTCAGCTAACTTAGTTCCGG-TCTGTCCTAT-GTAATTTTCTCCGCAGGA-GGTACAAAT-CATG-CAATATATTAAATTCCTGGATTTACATGACATATTCG-TCGAA-TGGTGA-----AA-GTTTTACCAC--ATTTAAAAGT--GAAAGTATCTCCTGTTTTTAAATAAGG-G--CAGGTACCACAACGGGGATCCATACA-TTTGGAAA--CTG-CAG---TTTTTTC---T---TCAGTGGT-TG-AAAATTTGGCTCTT------GTCAGTAGTTTCTTTA-GA-TTAGGA---GG---T---TGACGT---CGACTGTAGATAATGTTC--CTCATTTCAATGATGCTCCTTAG-----ATTTTTCGGATTGTTG----TAAAATCGGAAAGCA-TTGTTTAACAGAATTATA-ATATT--AATA--TTACG-GGAT------TGTGAG-TTAC-GA-CGAGGGG--G-AT-T--TG-T---TTT--TCTGA--TTTCATCCTGAG--TTCCCGATTTTC-TG--GAGTT-CCGAAGTTCTGAGATTGGTATAGATCTAGCCTTTTCT------AT---AGCGATA-TCTATTAAATTTTTCGG-ATA---TT--TCTGTC-TAAGTA-AA---AATGTTG-T--TAATTCCT--GTAGACGTTTATT--CCTTC--TGT----TTTCA---T-C-AA-----------CG--ACGATGGTAC-AA-ACAC-GTC-TCGC---CATGTTAAACGGTATGTTGCGTTTAACATGTGAGGGA--TGA-CAAGAAT-TGAATATC-A--G---GTACTGGTGCGAGT--CCGTTT-TC--TTGTAGTATAA---ATCCGT-TGTA------ATTTTCCTGTCTTCTTTTATTACGA--GG----AT------ATCCAA-AAAAG-GT------T--TTCT-GTGCTGCTTG-TTTCC-A--CCGTAAATTGAA-TCGAGGGA-TG---TAAACTGTTCA-ACATAT----TG--TGAA---AGT--CTTCTAA---ATCTTTATG--TGATTT--G--GCCAAAA-AATGAAACAATCGTCTAa
gi|5                          :                                 CAAAATGTTCGCTGCA--CGGG-GTGTTCCTAACAC-TGGGATCTTT-AATTTGCTGTTTATGTACCCTCACTCGCGCA-TTAAGTTTGTT---GGTTTGTCCTAT-ATAGTATTTTCCAAAGGTTGGGA-AAGTG-GC-ACAGTAAATTAAATT--TGCAGTTA--------AT-CGC--GGAAT--TGACTCTTAA-TATTTACC-CGGATTTGAGAGTT--AATGAATCACCTTCTTCTATATATCCA---CATGTCCTGCACCGTGGGTCACCACA-TTTTTTGA--C-A-CA----TTTCTCC---TGATTCAGCGAT------AATTTGGCTCTT---CTAGTTAGGAGTTTTTTAA-GGCTT-------AGCTCT---TGACGT---CGGCTTTTGATAAT-TTCTGCTAATTTTA-TAACATT--TTAA-----TATTGTTGGATTGTTA----TAAAATTGGAAAATA-TCGTTTACCTGTATTCGAGATATT--GTGG--TTCCTTGGAT------TATGTG-TGAT-AA-AGAAAGGTAC-AT-TAATG-T---TGTCATTTGA--GTTT-TTCTGA------CTGATTTTC-TG--GAGTT-CC---------AAATTGGTATTTTTTCTGCTTGTTGG------ATTCCAGCG----TTGATCAGGTTTTATGG-GTAGTGTT--GTTGTC-T---TA-AATG-AATCT---T--TAATTCCT--CTAATC-TCTATCTATCTT---TGC----CTTTA---TAT-AATATTGAATAGGTG--ATGATGCTGC-AA-ATAT-GTC-TGAG---CATATTGTTTGAAATATTATGTTTTGTGTGTGAC-GG--TGA-CATGATC-TGAA-ATCTA--G---ATATTGATGAGTGT--CCGTTT-CT--TTGCTGTATAA---ATCGGT-TGTA------ATGAGAGTGCCCTCTTTTATGATAA--AC----AA------ATCCAG-AAATG-GTGTA---T--TTTTAGTATCG---G-ATTCC-A--TTGTGAATTGGA-TTGATTCA-TG---TATATTATTTA-A---AT----TG---GAA---TGTAATTATTGACG-ATCCTCGTG--GTATTTC-G--TCCAGAA-AATGAAGCAATCATCTA
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   cgTTTTTT----TAAAACTG--AATCC-TTGTCTGGATATTTCAGATA-GTTTGGTGAAGTTCCTGGGATGAACTTTGTGC--TGGCTAA-CGAAAGG--TCAT-T--CG-TAAGTGT--TCT-------TAT--TGAC--GTTCTAAC---------GGTTT-CATGAGTTTTGAAATTGGTATTTTTTCTGC--TTGCTGG----ATTCCAGCAGTG----ATAAAATTGTTCGG--TAGTACTAGTTTGTC-T---TA-GATTGAATCTTAGT--TAAGTTCT--CTAA-----TATT----TTC--TAA----CATAACGCT-T-AAT----------CG--GAGATTGCGC-GGTATACTGTCGTGGCAAATATGTAGAATTTTACTTTG-GTTT------TGACGA---TGA-CA-GATTCTGAA-ATCTA--GACTGTATTGATTAGAGTGTCCGTTTCTT--TTGC-CTATAA---ATCGAT-TGTA------ATGTGA--GTC--CCTCTA--ATGA--GAATATAT------ATCCAGAAAATG-GTAGA---T--T--T-GTAGTACTCGACTTCC-GATTTGTGAATTGAATTCGATTCACTG---TAGATTGTTT--A-ATAT----TG--GGAATGCAAT--TTTGGAAGG-ATCTTCATGTTTG-TTC--A--TTCAGAA-AATa
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             tttaaaaatatcttactatgtctagtactgatGGG--TGA-CAGGAAT-TAAACATA-A--G---GTATTTATCTG--T--CAATTT----------GTAGAACACGTCTGT-TACT------ATGCGGTTGTCTCTTTTAATAACCA--TG----AC------ATCAAA-AAAGG-ACAGCA--TAATTCT-AT--TG---G-ACTCC-A--TGGTAAATT----TCAAGGTA-GGACTTAGCGTATTAAGA-ATAT----TG--AAAA---ACT--CCGTTAACTGGTCTTC-----TCCTCT--G--TCCCAAATAATAAAACAATCGTCCAtgtattaattcgcagtctttcactgcatgtgttaaccaaagcattgtacaatatattatcccagttcctctaaaaattcataaagttaattcaaaaggtgaaaatcgatgcgacttggtaccctattgcgttccctcgttatgttggaagataaataattggcgcgaaattgaaaatgagtataaacattctaaaatatgatccaagactcatgatatgagtcttgaaaatcctcattaatttcttgtcatggcgtattttttcaattcatacttccacagcttcttcc
gi|8                          :                                                                                                                                                                                                                                                                       tgttttGTTTTGAAAAAAGAAATACAGGTGCAACAACGAAGGCCCTGACA-TTTGGAGA--C-GGTAGATATTTCTTT---T---TCAA--AT-T--TAAATTTGGCTTTTTAAC-ACTAAGAAGTTTCTTCA-AA-TT----------------TGATGTATTCTACAATACATGATGTCC--TTTTCTTGAATAATTTCCTTTAA-----ATTTCTCG-ATTGTTG----GAGTACTGGGAACCAATTGTTC-GTTGTATTGAAGATGTT--GTGA--TTCCTGGGAT------TATGGG-TGAT-GA-CAAAAGG--G-AT-T--TA-T---CTG--CGTAAAGTTTTA----GA----TTCTGTCTTTC-TGTTGACTTCCCGTAATTCTGTAATTGGCAT-----TTG-TTTTTCT------TTT---G-GGTA-GCT-TTAA----TTGGG-ATA---TT--TTTGAC-GATGGATAT---AATCTTC-TTCTAA-TCTT--CTAATC-TT--TT--ATTTCAAAGT----TTT-----T-C-AAT----------CGTAACTATGGTGC-AG-ATGT-TCC-TGGC---TAAGTTAAAAAGTATGTTCTGTTTCGaaaaacgtttccatgactgttttaaaaagatatcaaagtcttgtccaaatgtttctcgaactgtagaaaataatttctcttccaaatatcctaaaaccaatgtcgcataagttggggcaactttggtttccatggcagtgcctagcttctgtcttgtaaattttaagttagtttcatctaaaagcatgaaagttctttttccaagattaattttaagacttgatatgacgaattcttaggaaatctctcgtgataaaagatgaggaaaacggtctatccaatattcatggcggctagtccgaggtcatgaggaatatttagaatagaggttcgttgacatcaaatggagactgatatggattccgagttaatttcctctggaaataggtgatctaaaaagtctacggtgtctctgatgtaactctgtactttggtgatgaatggtttcagcaataaatctaagagataactaattctgtgggtttcgcaggtgggtcccgcgacaatgggtctaattttaagatc
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               gTGTTTAGCTGTATTCAAGATGTT--ATGA--TTCCTTGGAT------TATGTG-TGTT-AA-CGAAAGG--T-ACAT--TG-T---TGT--TCTTA--TT------TGAGTTTTTCTGA----C-TG--GTTTT-CCGAAGTTC
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              taaTGCTGC-AA-ATAC-GTC-TGGC---CATATTaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgctgctgcaaatacgtctggccatattgt

Unaligned ( gi|12 ): AATTGTTCACAGCTTATTACTGACACTTGGATCTGTAATTTGTTTGTGGACCTGAACTCCTACATTAATTTACCAGTTTGCCTGAATATGGAATTTTTTAATGTTGGACAAAAAGCACAAAAGATCTGATTTTCAGTTGATTG
Unaligned ( gi|13 ): TTTCCTCTAAAAATCTCATAAAGTTAATTTAATGAGTGTGGAATAAGTCGAAGTGACTTTGGTACCAATTGCAGTTCCCTTAGTTGGAAAGTAAAA

lowQualScore                  :                      11                      11                     2                                         1      1   1         1        1111111                        2222  1          1        1111111          11         1111                         22222                                   222222222222       1111111       22222              333333                     444444444444      111                                        22222  11                1111                                                           111111                      1111          111        222222222222   2222      11                                   222             33333333333    11111                   333                     111      11111              2222222222222           44444444444444444444444              111           1                               11111             1            1   1                             11111   22                    111111                         2222222222222222              222222222    1      222                                   111                 1111                     3333      22222222   11          1                 
lowQualScore                  :                      11    8             7   00      7              6               6           6   6         3      3   3         3    6   8888888              6         8888  3  6       2     7  4444444        7 88         8888                         77777     0 22     0      11   8      1 333333333333  44   9999999    6  77777   0   3      555555  1  1        1 8    999999999999      444       1     3    99  1    1 3   1   5  00000  00 0      5       4444        44  7777      0  1     66 0  5   77    77  0 22    666666 0  1 6    6  6       6666  6 99  6 111 1 99   444444444444   3333   0  99   5  66  1  5   1                 222 0 1 99      44444444444    44444 1     2        9  111  8888     6666   5  777   1  22222   1    77    2222222222222   77      00000000000000000000000  8888        333  5    5   0    888         0         1    11111    1  777   0  5  0 5    3   5 66 888      3 66 1 5        11111   55      888   1  5    444444   8888    22       2  1 8888888888888888     77   1   777777777    0  99  111 66    5 66 2       2  5      1 5  777    2    0 99    0000  6   888 4 66  11   8888      33333333   11 66       0                 
lowQualScore                  :                      ..    .             .   ..      .              .               .           .   .         .      .   .         .    .   .......              .         ....  .  .       .     .  .......        . ..         ....                         .....     . ..     .      ..   .      . ............  ..   .......    .  .....   .   .      ......  .  .        . .    ............      ...       .     .    ..  .    . .   .   .  .....  .. .      .       ....        ..  ....      .  .     .. .  .   ..    ..  . ..    ...... .  . .    .  .       ....  . ..  . ... . ..   ............   ....   .  ..   .  ..  .  .   .                 ... . . ..      ...........    ..... .     .        .  ...  ....     ....   .  ...   .  .....   .    ..    .............   ..      .......................  ....        ...  .    .   .    ...         .         .    .....    .  ...   .  .  . .    .   . .. ...      . .. . .        .....   ..      ...   .  .    ......   ....    ..       .  . ................     ..   .   .........    .  ..  ... ..    . .. .       .  .      . .  ...    .    . ..    ....  .   ... . ..  ..   ....      ........   .. ..       .                 
lowQualScore                  :                      00    0             3   33      3              7               7           7   7         3      3   3         3    7   0000000              7         3333  3  7       0     3  3333333        3 33         3333                         55555     8 22     2      88   0      4 222222222222  00   0000000    4  44444   8   2      888888  4  0        0 0    666666666666      000       0     2    22  0    0 2   7   0  00000  22 8      0       2222        00  7777      1  9     99 7  7   99    99  7 44    444444 4  0 7    7  7       8888  7 22  7 777 0 22   777777777777   0000   7  22   0  99  0  0   0                 000 4 0 66      11111111111    33333 3     3        3  333  0000     7777   7  999   0  33333   4    99    9999999999999   99      77777777777777777777777  4444        888  0    0   0    888         4         7    88888    0  111   0  9  8 0    1   5 99 888      9 99 0 9        99999   44      888   4  0    444444   0000    99       8  4 1111111111111111     22   0   666666666    0  99  888 00    0 99 2       5  0      0 0  555    2    2 66    6666  6   888 5 99  44   8888      99999999   99 99       0                 
consensus                     :     TCAAAATGTTTACTGCA--GGGT-GTATTCCTGACGGATGGGGTCCCCGTATTTGTTGCTTGTG-ACTCTCACACGGTCAGCTAACTTAGTTCCGGGTCTGTCCTA-TGTAAT-TTT-TCCGCAGGA-GGTACAAA-TCGCGACAATATATTAAATTCCTGGATTTA----CG-GACATATTCGCTCGAAATGGTGAAA-GTTTTACCAC--ATTTAAAAG-TTGAAAGTATCTCCTGTTTTTAAATAAGGAG--CAGGTACCGCAACGGGGGTCCNTACA-TTTGGAGA--C-G-CAG---TTTCTTC---T---TCAGCGAT-T-GAAAATTTGGCTCTT---C-AGTCAGNAGTTTCTTNA-GATT-----GAGGTC-TGACGT---CGACTGTNGATAATGTTC--CTCATTTCAATGATGCTCCT-----TAG-ATTTTTCGGATTGTTG----TAAAATCGGAAANCA-TTGTTTAGCTGTATTNNAGAT-GTT--GTGA--TTCCTGGGAT------TGTGNG-TGAC-GA-CGAAAGG--N-AT-T--TG-T---TNT--TCTGA--TTTTATCCTGAG--TTTCCGACTTTC-TG--GANTT-CCGAAGTTCTGAGATTGGTATAGATCTNGCCTTTTCT------ATTCCAGCGATA-TCTATTAAATTTTTCGGATAGT-TT--T-CTGTC-TAAGTA-AA---AATCTT-GT--TAATTCCT--CTAGAC-TTTATT--CCTTC--TGTTTT-CA---T-C-AAT----------CG--ACGATGGTGC---AA-ATAC-GTC-TGGC---CATGTTGAACGGTATGTTGCGTTTNGCGTGTGANGGG--TGA-CANGAAT-TGAATATCTA--G---GTATTGAT--GNGNGTCCGTTT-TC--TTGC-GTATAA---ATCCGT-TGTA------ATGCGNCTGTCTTCTTTTATNACGA--GG----AT------ATCCAG-AAANGGTAG---AT--TTCT-GTGCTGCTTG-NTTCC-A--TCGTAAATTGAA-TCGAGGNA-TG---TAGACTGTTCAANATAT----TGTGAA---AGT--CTTCTAA-C--ATCTTCGTG--TGATTT--G--TCCAAAA-AATGAAACAATCGTCTA
Reference ( family-1292 )     :     TCAAAATGTTTACTGCA--GGGT-GTATTCCTGACGGATGGGGTCCCCGTATTTGTTGCTTGTG-ACTCTCACACGGTCAGCTAACTTAGTTCCGGGTCTGTCCTA-TGTAAT-TTT-TCCGCAGGA-GGTACAAA-TCGCGACAATATATTAAATTCCTGGATTTA----CA-GACATATTCGCTCGAAATGGTGAAA-GTTTTACCAC--ATTTAAAAG-TTGAAAGTATCTCCTGTTTTTAAATAAGGAG--CAGGTACCGCAACGGGGGTCCNTACA-TTTGGAGA--C-G-CAG---TTTCTTC---T---TCAGCGAT-T-GAAAATTTGGCTCTT---C-AGTCAGNAGTTTCTTNA-GATT-----GAGGT--TGACGT---CGACTGTNGATAATGTTC--CTCATTTCAATGATGCTCCT-----TAA-ATTTTTCGGATTGTTG----TAAAATCGGAAAGCA-TTGTTTAGCTGTATTANAGAT-GTT--GTGA--TTCCTNGGAT------TGTGNG-TGAC-GA-CGAAAGG--N-AT-T--TG-T---TNT--TCTGA--TTTTATCCTGAG--TTTCCGACTTTC-TG--GANTT-CCGAAGTTCTGAGATTGGTATAGATCTNGCCTTTTCT------ATTCCAGCGATA-TCTATTAAATTTTTCGGATAGT-TT--T-CTGTC-TAAGTA-AA---AATNTT-GT--TAATTCCT--CTAGAC-TTTATT--CCTTC--TGTTTT-CA---T-C-AAT----------CG--ACGATGGTGC---AA-ATAC-GTC-TGGC---CATGTTGAACGGTATGTTGCGTTTNGCGTGTGANGGG--TGA-CANGAAT-TGAATATCTA--G---GTATTGAT--GNGNGTCCGTTT-TC--TTGC-GTATAA---ATCCGT-TGTA------ATGCGNCTGTCTTCTTTTATNACGA--GG----AT------ATCCAG-AAANGGTAG---AT--TTCT-GTGCTGCTTG-NTTCC-A--TCGTAAATTGAA-TCGAGGNA-TG---TAGACTGTTCAACATAT----TGTGAA---AGT--CTTCTAA-C--ATCTTCGTG--TGATTT--G--TCCAAAA-AATGAAACAATCGTCTA
gi|1                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TT-TG--AATTT-CCGGAGTTCCAAAATTGGAAT---TTTTG--TTTGCTTGTTGGATTCCAGCG----TTGATCAGGTTTTCTGGGTAGT-GC--TGCTGTCATAAATG-AA-----TCTT-----TAATTCCT--CT-GAT-CT------CTTTC--TACGTAACG---T-TGAAT----------CG--GTGATGGTGCTGCAA-ATAC-GTC-TGAC---CATATTGTATGGAATATTACGTTTTGTGTGTGACGGG--TGA-CATGATC-TGAA-ATCTA--G---ATATTGAT--GGGTGTCCGTTT-CT--TTGCTGTATAA---ATCAGT-TGTA------ATGCGAGTGCCCTCTTTTATGATCT--GA----ATCAACAAGTCCAG-AAATGGTAG---AA--TTCTAGTACTGT----CTTCC-A--TTGTGAATTGAA-TTGATTCA-TG---TAGATTATTCAAAATGG----AATGAA---A-T--GTTTGAA-G--ATCCTCGTG---GTTTTTCG--TCCAGAA-GATGAAGCAATCATCTA
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               tacattgttgttgtcaGG--TGAACAGGAAT-TAAACA-ATAACG---GTATTGCT--TGGTATCTGCCT-TCAATTG---TAGAA---CACCGTCTGTATTACGTATGCGGTTGTCT-CTTACATACCCATCGG-----C------ATCAAG-AAAGGACAGCATAT--TTCT-AT--TG---G-ACTCC-A--TGGTAAATT----TCAAGGTA-GGACTTAGCGTATTAAGAATAT----TGAAAA---ACT--CCGTTAA-CTGGTCTTC--------TCT--G--TCCCAACTAATAAAACAATCGTCCAagtaacgtttccagttttcacgtatgtatttcccaaagtctgcgtcaaatatttccggtaaagtgttatatatcctttcctctattttaaaaattccataaagagtgtggcataggtcggagcgactttggtacccattgcagtccccttagtttggaggtaaaattgtacgttaaattggaaatgattattttctaatacgagtttaagacattagatgatgaagtctttggaaaatctttcattaatttctgtaggatatttctcgatccagtacttaacagcttcattctattcctagatcatgtggaatatttgtatatagactagaaacatcgaaactgacaagaatggtttcgggttgcactgtttttggaatgtaattcaagaaatccatatcatccgaacatagctcggcacttttttacatagaggttttaaaataatgtctaaaagattacttagcctctgcgcgctagaatgaaggtcctgctattatggggcgtaacttgaggtc
gi|11                         :                                                                                                                                                                                                                                                                             gtatgttttgggtcATA-TTTGTATA--C-A-TTG---TATATTCAGAT---TCAGCGA-----GAAATTTA---CTG---T-AGCTAGGAATTTTTTAAAGCCT-----GATGCC-TGACGT---CGGCTGGTGATA--GTT-------------TGA-GCTGCTTTATCTAT-ATTTTCCTTATTGTTGGACTTAAAATC-----------ATTTAGCTATATTGAAGAT-ATT--GTGA--TTGTTTGGTT------TCTGaaaaacgtttcca
gi|14                         : ttatcCAAAATGTTTGCTGCACTGGGT-GTacaagcttttccgaagtcttgaaattggcatattttctgcttgctggtttccagcatcgataag
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                           tcaaTGTAGATAATGTTC--TTCATTTCAATGATGCTctcacactggttctttaatgtgttttcatgcgacgcacgcacgtacgcat
gi|16                         :     TCAAAATGTTTACTGCA--GGGT-GTATTACTAACagcattgtttaacagaattatacatgtacatattaattac
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         aaaTC-TG--GAGTT-CCGAAGTTCTGAGATTGGTATAGATCTAGCCTTTTCT------AT---AGCGATA-TCTATTAAATTTTTCGGATA---TT--T-CTGTC-TAAGTA-AA---AATGTT-GT--TAATTCCT--GTAGACGTTTATT--CCTTC--TGTTTT-CA---T-C-AA-----------CG--ACGATGGTAC---AA-ACAC-GTC-TCGC---CATGTTAAACGGTATGTTGCGTTTAACATGTGAGGGA--TGA-CAAGAAT-TGAATATC-A--G---GTACTGGT--GCGAGTCCGTTT-TC--TTGTAGTATAA---ATCCGT-TGTA------ATTTTCCTGTCTTCTTTTATTACGA--GG----AT------ATCCAA-AAAAGGT------T--TTCT-GTGCTGCTTG-TTTCC-A--CCGTAAATTGAA-TCGAGGGA-TG---TAAACTGTTCAACATAT----TGTGAA---AGT--CTTCTAA----ATCTTTATG--TGATTT--G--GCCAAAA-AATGAAACAATCGTCTA
gi|3                          :       AAAATGTTTACTGCA--GGGTCGTATTCCTGACGGATGGGGTCCCCGTATTTGTTGCTTGTG-ACTCTCACACGGTCAGCTAACTTAGTTCCGGGTCTGTCCTATTGTAAT-TTT-TCCGCAGGA-GGTACAAATTCATGACAATATATTAAATTCCTGGATTTA----CA-GACATATTCGTTCGAAATGGTGAAACGTTTTACCAC--ATTTAAAAGTTTGAAAGTACGTCCTGTTTTTAAATAAGGGG--CAGTTACCACAACGGGGATCCATACATTTTGGAAAACT-G-CAG---TT--TTC---T---TCAATGGTGTGGAAAATTT-GCTCTT------GTCAGTAGTTTCTTTA-GATTTAGAGGAGGT--TGACGT---CGACTGATGATAA-GTTC--CTCATTTCAATGATGCTCCT-----TAG-A--TTTCGGATTGTTG----TAAAATCGGAAAGCA-TTGTTTAACAGAATTATACAT-ATT--AATA--TTACGGGGA--------GTGAGTTAAC-GACCGAGGGG--G-AT-T--TGTT---TTT--TCTGA--TTTCATCCTGAG--TTCCCGA--TTCGTG--GAGTT--CGAAGTTCTGAGATTGGTATAGATCTAGCCTTTTCT------AT---AGCGATAGTCTATT-AATTTTTCGG-TA-T-TT--T-CTGTC-TAAGTA-AA---AATGTT-GT--TAATTCCTTGTTAGAC--TTATT--C--TC--TGTTTT-C------C-AAA----------CG--A-GATGGTACA--AA-ACAC-GTCTTCGC---CATGTTAAACGGTATGTTGCGTTTAACA-GTGAGGGGATTGACCAAGAAT-TG-ATATC-A--G---GTACTG-T--GCGAGT-CGTTT-TC--TT-T-GTAT-A---ATCCGT-TGTA------ATTTTCCT-TCTTCTTTTATTACGAAGGA----AT------ATCCA--AAAAGGT-G---TC--ATCT-GTGCTGCTTG-TTTCCAA--CCGTAAATTGAA-TCGAGGGA-TG---TAAACTGTTCAACATATATTGTGTGAA---AGT--TTTCTAA----ATCTTTCAG--TGATTT--GGACCCAAAA-AA-GAAACAATCGTCTAaatatcgcttccagttagattttatgtattgcgcaaattgatttccaaataatctgtctgtgttatcaaatatttctcctctaggaatcctagtactagggtagcatatgttggggcgactttatacccatggctgttccttttatttgtaagaatgtttgttgtcgaacataaaatagttattctcgagtactaattttaattcctctaagataaagtctttggaaaatctaggattaatttcgctttggtgttatcgatccagaatgcaattgcttctaatcctaaagtatgtggtatgttgggtatacaagaagtgacatcaaaactaagccattgttggtattcaacctcaactgttctgggaattggctgaggaaatctaaaatcgtccctttatgtagcttgtacaacagttgacagaaaaataaaatggcttaagaagtatgttaataattgctagagtcgtgggtggaacagacgggttccggctaccaattggtcgaagctttaaat
gi|4                          :     TCAAAATGTTTACTGCA--GGGT-GTATTCCTGACGGATGG---TCCCGTATTTGTTGCTTGTGGACTCTCACACGGTCAGCTAACTTAGTTCCGG-TCTGTCCTA-TGTAAT-TTTCTCCGCAGGA-GGTACAAA-TCATG-CAATATATTAAATTCCTGGATTTA----CATGACATATTCG-TCGAA-TGGTGAAA-GTTTTACCAC--ATTTAAAAG-T-GAAAGTATCTCCTGTTTTTAAATAAGG-G--CAGGTACCACAACGGGGATCCATACA-TTTGGAAA--CTG-CAG---TTTTTTC---T---TCAGTGGT-T-GAAAATTTGGCTCTT------GTCAGTAGTTTCTTTA-GATTAG---GAGGT--TGACGT---CGACTGTAGATAATGTTC--CTCATTTCAATGATGCTCCT-----TAG-ATTTTTCGGATTGTTG----TAAAATCGGAAAGCA-TTGTTTAACAGAATTATA-AT-ATT--AATA--TTAC-GGGAT------TGTGAG-TTAC-GA-CGAGGGG--G-AT-T--TG-T---TTT--TCTGA--TTTCATCCTGAG--TTCCCGATTTTC-TG--GAGTT-CCGAAGTTCTGAGATTGGTATAGATCTAGCCTTTTCT------AT---AGCGATA-TCTATTAAATTTTTCGGATA---TT--T-CTGTC-TAAGTA-AA---AATGTT-GT--TAATTCCT--GTAGACGTTTATT--CCTTC--TGTTTT-CA---T-C-AA-----------CG--ACGATGGTAC---AA-ACAC-GTC-TCGC---CATGTTAAACGGTATGTTGCGTTTAACATGTGAGGGA--TGA-CAAGAAT-TGAATATC-A--G---GTACTGGT--GCGAGTCCGTTT-TC--TTGTAGTATAA---ATCCGT-TGTA------ATTTTCCTGTCTTCTTTTATTACGA--GG----AT------ATCCAA-AAAAGGT------T--TTCT-GTGCTGCTTG-TTTCC-A--CCGTAAATTGAA-TCGAGGGA-TG---TAAACTGTTCAACATAT----TGTGAA---AGT--CTTCTAA----ATCTTTATG--TGATTT--G--GCCAAAA-AATGAAACAATCGTCTAa
gi|5                          :      CAAAATGTTCGCTGCA--CGGG-GTGTTCCTAACAC-TGGGATCTTTA-ATTTGCTGTTTATGTACCCTCACTCGCGCA-TTAAGTTTGTT---GGTTTGTCCTA-TATAGTATTT-TCCAAAGGTTGGGA-AAG-TGGC-ACAGTAAATTAAATT--TGCAGTTAATCGCG-GA---ATTGACTCTTAATA---------TTTACC-CGGATTTGAGAG-TT-AATGAATCACCTTCTTCTATATATCCA---CATGTCCTGCACCGTGGGTCACCACA-TTTTTTGA--C-A-CA----TTTCTCC---TGATTCAGCGAT------AATTTGGCTCTT---CTAGTTAGGAGTTTTTTAA-GGCT-----TAGCTCTTGACGT---CGGCTTTTGATAAT-TTCTGCTAATTTTA-TAACATT--T-----TAATATTGTT-GGATTGTTA----TAAAATTGGAAAATA-TCGTTTACCTGTATTCGAGAT-ATT--GTGG--TTCCTTGGAT------TATGTG-TGAT-AA-AGAAAGGTAC-AT-TAATG-T---TGTCATTTGA--GTTT-TTCTGA------CTGATTTTC-TG--GAGTT-CC---------AAATTGGTATTTTTTCTGCTTGTTGG------ATTCCAGCG----TTGATCAGGTTTTATGGGTAGTGTT--G-TTGTC-T---TA-AATG-AATCT---T--TAATTCCT--CTAATC-TCTATCTATCTT---TGCCTT-TA---TAT-AATATTGAATAGGTG--ATGATGCTGC---AA-ATAT-GTC-TGAG---CATATTGTTTGAAATATTATGTTTTGTGTGTGAC-GG--TGA-CATGATC-TGAA-ATCTA--G---ATATTGAT--GAGTGTCCGTTT-CT--TTGCTGTATAA---ATCGGT-TGTA------ATGAGAGTGCCCTCTTTTATGATAA--AC----AA------ATCCAG-AAATGGTGT---AT--TTTTAGTATCG---G-ATTCC-A--TTGTGAATTGGA-TTGATTCA-TG---TATATTATTTAA---AT----TG-GAA---TGTAATTATTGA-CG-ATCCTCGTG--GTATTTC-G--TCCAGAA-AATGAAGCAATCATCTA
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                    cgTTTTTT----TAAAACTG--AATCC-TTGTCTGG--ATATTTCAGATAGTTTGGTGAAGTTCCTGGGATGAACTTTGTGC--TGGCTAA-CGAAAGG--TCAT-T--CG-TAAGTGT--TCT-------TAT--TGAC--GTTCTAAC---------GGTTT-CATGAGTTTTGAAATTGGTATTTTTTCTGC--TTGCTGG----ATTCCAGCAGTG----ATAAAATTGTTCGG-TAGTACTAGT-TTGTC-T---TA-GATTGAATCTTAGT--TAAGTTCT--CTAA-----TATT----TTC--TAACAT-AACGCT-T-AAT----------CG--GAGATTGCGC---GGTATACTGTCGTGGCAAATATGTAGAATTTTACTTTG-GTTT------TGACGA---TGA-CA-GATTCTGAA-ATCTA--GACTGTATTGATTAGAGTGTCCGTTTCTT--TTGC-CTATAA---ATCGAT-TGTA------ATGTGA--GTC--CCTCTA--ATGA--GAATATAT------ATCCAGAAAATGGTAG---AT--T--T-GTAGTACTCGACTTCC-GATTTGTGAATTGAATTCGATTCACTG---TAGATTGTTTA--ATAT----TGGGAATGCAAT--TTTGGAAGG--ATCTTCATGTTTG-TTC--A--TTCAGAA-AATa
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              tttaaaaatatcttactatgtctagtactgatGGG--TGA-CAGGAAT-TAAACATA-A--G---GTATTTAT--CTG--TCAATTT----------GTAGAACACGTCTGT-TACT------ATGCGGTTGTCTCTTTTAATAACCA--TG----AC------ATCAAA-AAAGGACAGC--ATAATTCT-AT--TG---G-ACTCC-A--TGGTAAATT----TCAAGGTA-GGACTTAGCGTATTAAGAATAT----TGAAAA---ACT--CCGTTAA-CTGGTCTTC-----TCCTCT--G--TCCCAAATAATAAAACAATCGTCCAtgtattaattcgcagtctttcactgcatgtgttaaccaaagcattgtacaatatattatcccagttcctctaaaaattcataaagttaattcaaaaggtgaaaatcgatgcgacttggtaccctattgcgttccctcgttatgttggaagataaataattggcgcgaaattgaaaatgagtataaacattctaaaatatgatccaagactcatgatatgagtcttgaaaatcctcattaatttcttgtcatggcgtattttttcaattcatacttccacagcttcttcc
gi|8                          :                                                                                                                                                                                                                                            tgttttGTTTTGAAAAAAGAAATACAGGTGCAACAACGAAGGCCCTGACA-TTTGGAGA--C-GGTAGATATTTCTTT---T---TCAA--AT-T-TAAA-TTTGGCTTTTTAAC-ACTAAGAAGTTTCTTCA-AATT------------TGATGTATTCTACAATACATGATGTCC--TTTTCTTGAATAATTTCCTT-----TAA-ATTTCTCG-ATTGTTG----GAGTACTGGGAACCAATTGTTC-GTTGTATTGAAGAT-GTT--GTGA--TTCCTGGGAT------TATGGG-TGAT-GA-CAAAAGG--G-AT-T--TA-T---CTG--CGTAAAGTTTTA----GA----TTCTGTCTTTC-TGTTGACTTCCCGTAATTCTGTAATTGGCAT-----TTG-TTTTTCT------TTT---G-GGTA-GCT-TTAA----TTGGGATA---TT--T-TTGAC-GATGGATAT---AATCTT-CTTCTAA-TCTT--CTAATC-TT--TT--ATTTCAAAGTTTT------T-C-AAT----------CGTAACTATGGTGC---AG-ATGT-TCC-TGGC---TAAGTTAAAAAGTATGTTCTGTTTCGaaaaacgtttccatgactgttttaaaaagatatcaaagtcttgtccaaatgtttctcgaactgtagaaaataatttctcttccaaatatcctaaaaccaatgtcgcataagttggggcaactttggtttccatggcagtgcctagcttctgtcttgtaaattttaagttagtttcatctaaaagcatgaaagttctttttccaagattaattttaagacttgatatgacgaattcttaggaaatctctcgtgataaaagatgaggaaaacggtctatccaatattcatggcggctagtccgaggtcatgaggaatatttagaatagaggttcgttgacatcaaatggagactgatatggattccgagttaatttcctctggaaataggtgatctaaaaagtctacggtgtctctgatgtaactctgtactttggtgatgaatggtttcagcaataaatctaagagataactaattctgtgggtttcgcaggtgggtcccgcgacaatgggtctaattttaagatc
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                gTGTTTAGCTGTATTCAAGAT-GTT--ATGA--TTCCTTGGAT------TATGTG-TGTT-AA-CGAAAGG--T-ACAT--TG-T---TGT--TCTTA--TT------TGAGTTTTTCTGA----C-TG--GTTTT-CCGAAGTTC
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             taaTGCTGC---AA-ATAC-GTC-TGGC---CATATTGaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgctgctgcaaatacgtctggccatattgt

Unaligned ( gi|12 ): AATTGTTCACAGCTTATTACTGACACTTGGATCTGTAATTTGTTTGTGGACCTGAACTCCTACATTAATTTACCAGTTTGCCTGAATATGGAATTTTTTAATGTTGGACAAAAAGCACAAAAGATCTGATTTTCAGTTGATTG
Unaligned ( gi|13 ): TTTCCTCTAAAAATCTCATAAAGTTAATTTAATGAGTGTGGAATAAGTCGAAGTGACTTTGGTACCAATTGCAGTTCCCTTAGTTGGAAAGTAAAA

lowQualScore                  :                      11                      11                     2                                         1      1   1         1        1111111                        3333333          1        1111111          11         1111                         22222                                   222222222222       1111111       22222              333333                     33333     22                                              22222                    1111                                                           111111                      1111          111        222222222222   2222      11                                   222             33333333333    11111                   333                     111      11111              2222222222222          333333333333333333333333                             1                               11111             1            1   1                             11111   22                    111111                         2222222222222222              222222222    1      222                                   111                 1111                     3333      22222222   11          1                 
lowQualScore                  :                      11    8             7   00      7              6               6           6   6         3      3   3         3    6   8888888              6         2222222  6       2     7  4444444        7 88         8888                         77777     0 22     0      11   8      1 333333333333  44   9999999    6  77777   0   3      555555  1  1        1 8    99999     33             1     3    99  1    44    1   5  00000  8 88      5       4444        44  3  6      0  1     22 0  5   77    77    3     999999    1 6    6  6       6666  6 99  6 111 1 99   444444444444   3333   0  99   5  66  1  5   1                 222 0 1 99      44444444444    44444 1     2        9  111  8888     6666   5  777   0  22222   1    77    2222222222222   77     555555555555555555555555  8888     888   5  5    5   0    888         0         1    11111    1  777   0  5  0 5    3   5 66 888      3 66 1 5        11111   55      888   1  5    444444   8888    22       2  1 8888888888888888     77   1   777777777    0  99  111 66    5 66 2       2  5      1 5  777    2    0 88    0000  6   888 4 66  11   8888      33333333   11 66       0                 
lowQualScore                  :                      ..    .             .   ..      .              .               .           .   .         .      .   .         .    .   .......              .         .......  .       .     .  .......        . ..         ....                         .....     . ..     .      ..   .      . ............  ..   .......    .  .....   .   .      ......  .  .        . .    .....     ..             .     .    ..  .    ..    .   .  .....  . ..      .       ....        ..  .  .      .  .     .. .  .   ..    ..    .     ......    . .    .  .       ....  . ..  . ... . ..   ............   ....   .  ..   .  ..  .  .   .                 ... . . ..      ...........    ..... .     .        .  ...  ....     ....   .  ...   .  .....   .    ..    .............   ..     ........................  ....     ...   .  .    .   .    ...         .         .    .....    .  ...   .  .  . .    .   . .. ...      . .. . .        .....   ..      ...   .  .    ......   ....    ..       .  . ................     ..   .   .........    .  ..  ... ..    . .. .       .  .      . .  ...    .    . ..    ....  .   ... . ..  ..   ....      ........   .. ..       .                 
lowQualScore                  :                      00    0             3   33      3              7               7           7   7         3      3   3         3    7   0000000              7         3333333  7       0     3  3333333        3 33         3333                         55555     8 22     2      88   0      4 222222222222  00   0000000    4  44444   8   2      888888  4  0        0 0    00000     00             0     2    22  0    22    7   0  00000  2 88      0       2222        00  3  7      1  9     00 7  7   99    99    2     222222    0 7    7  7       8888  7 22  7 777 0 22   777777777777   0000   7  22   0  99  0  0   0                 000 4 0 66      11111111111    33333 3     3        3  333  0000     7777   7  999   7  33333   4    99    9999999999999   99     444444444444444444444444  4444     888   0  0    0   0    888         4         7    88888    0  111   0  9  8 0    1   5 99 888      9 99 0 9        99999   44      888   4  0    444444   0000    99       8  4 1111111111111111     22   0   666666666    0  99  888 00    0 99 2       5  0      0 0  555    2    2 55    6666  6   888 5 99  44   8888      99999999   99 99       0                 
consensus                     :     TCAAAATGTTTACTGCA--GGGT-GTATTCCTGACGGATGGGGTCCCCGTATTTGTTGCTTGTG-ACTCTCACACGGTCAGCTAACTTAGTTCCGGGTCTGTCCTA-TGTAAT-TTT-TCCGCAGGA-GGTACAAA-TCGCGACAATATATTAAATTCCTGGATTTA----CG-GACATATTCGCTCGAAATGGTGAAA-GTTTTACCAC--ATTTAAAAG-TTGAAAGTATCTCCTGTTTTTAAATAAGGAG--CAGGTACCGCAACGGGGGTCCNTACA-TTTGGAGA--C-G-CAG---TTTCTTC---T---TCAGCGAT-T-GAAAATTTGGCTCTT---C-AGTCAGNAGTTTCTTNA-GATTT----GAGGTC-TGACGTCGACTGTNGATAATGTTC--CTCATTTCAATGATGCTCCT-----TAGAT-TTTTCGGATTGTTG----TAAAATCGGAAANCA-TTGTTTAGCTGTATTNNAGAT-GTT--GTGA--TTCCTGGGAT------TGTGNG-TGAC-GA-CGAAAGG--N-AT-T--TG-T---TNT--TCTGA--TTTTATCCTGAG--TTTCCGACTTTC-TG--GANTT-CCGAAGTTCTGAGATTGGTATAGATCTNGCCTTTTCT------ATTCCAGCGATA-TCTATTAAATTTTTCGGATAGT-TT--T-CTGTC-TAAGTA-AA---AATCTT-GT--TAATTCCT--CTAGAC-TTTATT--CCTTC--TGTTT-TCA---T-C-AAT----------CG--ACGATGG---TGC-AA-ATAC-GTC-TGGC---CATGTTGAACGGTATGTTGCGTTTNGCGTGTGANGGG--TGA-CANGAAT-TGAATATCTA--G---GTATTGAT--GNGNGTCCGTTT-TC--TTGC-GTATAA---ATCCGT-TGTA------ATGCGNCTGTCTTCTTTTATNACGA--GG----AT------ATCCAG-AAANGGTAG---AT--TTCT-GTGCTGCTTG-NTTCC-A--TCGTAAATTGAA-TCGAGGNA-TG---TAGACTGTTCAANATAT----TGTGAA---AGT--CTTCTAA-C--ATCTTCGTG--TGATTT--G--TCCAAAA-AATGAAACAATCGTCTA
Reference ( family-1292 )     :     TCAAAATGTTTACTGCA--GGGT-GTATTCCTGACGGATGGGGTCCCCGTATTTGTTGCTTGTG-ACTCTCACACGGTCAGCTAACTTAGTTCCGGGTCTGTCCTA-TGTAAT-TTT-TCCGCAGGA-GGTACAAA-TCGCGACAATATATTAAATTCCTGGATTTA----CG-GACATATTCGCTCGAAATGGTGAAA-GTTTTACCAC--ATTTAAAAG-TTGAAAGTATCTCCTGTTTTTAAATAAGGAG--CAGGTACCGCAACGGGGGTCCNTACA-TTTGGAGA--C-G-CAG---TTTCTTC---T---TCAGCGAT-T-GAAAATTTGGCTCTT---C-AGTCAGNAGTTTCTTNA-GATT-----GAGGTC-TGACGTCGACTGTNGATAATGTTC--CTCATTTCAATGATGCTCCT-----TAGAT-TTTTCGGATTGTTG----TAAAATCGGAAANCA-TTGTTTAGCTGTATTNNAGAT-GTT--GTGA--TTCCTGGGAT------TGTGNG-TGAC-GA-CGAAAGG--N-AT-T--TG-T---TNT--TCTGA--TTTTATCCTGAG--TTTCCGACTTTC-TG--GANTT-CCGAAGTTCTGAGATTGGTATAGATCTNGCCTTTTCT------ATTCCAGCGATA-TCTATTAAATTTTTCGGATAGT-TT--T-CTGTC-TAAGTA-AA---AATCTT-GT--TAATTCCT--CTAGAC-TTTATT--CCTTC--TGTTT-TCA---T-C-AAT----------CG--ACGATGG---TGC-AA-ATAC-GTC-TGGC---CATGTTGAACGGTATGTTGCGTTTNGCGTGTGANGGG--TGA-CANGAAT-TGAATATCTA--G---GTATTGAT--GNGNGTCCGTTT-TC--TTGC-GTATAA---ATCCGT-TGTA------ATGCGNCTGTCTTCTTTTATNACGA--GG----AT------ATCCAG-AAANGGTAG---AT--TTCT-GTGCTGCTTG-NTTCC-A--TCGTAAATTGAA-TCGAGGNA-TG---TAGACTGTTCAANATAT----TGTGAA---AGT--CTTCTAA-C--ATCTTCGTG--TGATTT--G--TCCAAAA-AATGAAACAATCGTCTA
gi|1                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TT-TG--AATTT-CCGGAGTTCCAAAATTGGAAT---TTTTG--TTTGCTTGTTGGATTCCAGCG----TTGATCAGGTTTTCTGGGTAGT-GC--TGCTGTCATAAATG-AA-----TCTT-----TAATTCCT--CT-GAT-----CT--CTTTC--TACGTAACG---T-TGAAT----------CG--GTGATGGTGCTGC-AA-ATAC-GTC-TGAC---CATATTGTATGGAATATTACGTTTTGTGTGTGACGGG--TGA-CATGATC-TGAA-ATCTA--G---ATATTGAT--GGGTGTCCGTTT-CT--TTGCTGTATAA---ATCAGT-TGTA------ATGCGAGTGCCCTCTTTTATGATCT--GA----ATCAACAAGTCCAG-AAATGGTAG---AA--TTCTAGTACTGT----CTTCC-A--TTGTGAATTGAA-TTGATTCA-TG---TAGATTATTCAAAATGG----AATGAA---A-T--GTTTGAA-G--ATCCTCGTG---GTTTTTCG--TCCAGAA-GATGAAGCAATCATCTA
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             tacattgttgttgtcaGG--TGAACAGGAAT-TAAACA-ATAACG---GTATTGCT--TGGTATCTGCCT-TCAATTG---TAGAA---CACCGTCTGTATTACGTATGCGGTTGTCT-CTTACATACCCATCGG-----C------ATCAAG-AAAGGACAGCATAT--TTCT-AT--TG---G-ACTCC-A--TGGTAAATT----TCAAGGTA-GGACTTAGCGTATTAAGAATAT----TGAAAA---ACT--CCGTTAA-CTGGTCTTC--------TCT--G--TCCCAACTAATAAAACAATCGTCCAagtaacgtttccagttttcacgtatgtatttcccaaagtctgcgtcaaatatttccggtaaagtgttatatatcctttcctctattttaaaaattccataaagagtgtggcataggtcggagcgactttggtacccattgcagtccccttagtttggaggtaaaattgtacgttaaattggaaatgattattttctaatacgagtttaagacattagatgatgaagtctttggaaaatctttcattaatttctgtaggatatttctcgatccagtacttaacagcttcattctattcctagatcatgtggaatatttgtatatagactagaaacatcgaaactgacaagaatggtttcgggttgcactgtttttggaatgtaattcaagaaatccatatcatccgaacatagctcggcacttttttacatagaggttttaaaataatgtctaaaagattacttagcctctgcgcgctagaatgaaggtcctgctattatggggcgtaacttgaggtc
gi|11                         :                                                                                                                                                                                                                                                                             gtatgttttgggtcATA-TTTGTATA--C-A-TTG---TATATTCAGAT---TCAGCGA-----GAAATTTA---CTG---T-AGCTAGGAATTTTTTAAAGCCT-----GATGCC-TGACGTCGGCTGGTGATA--GTT-------------TGA-GCTGCTTTATCTATAT-TTTCCTTATTGTTGGACTTAAAATC-----------ATTTAGCTATATTGAAGAT-ATT--GTGA--TTaaaaacgtttcca
gi|14                         : ttatcCAAAATGTTTGCTGCACTGGGT-GTgtttggtttctgacaagcttttccgaagtcttgaaattggcatattttctgcttgctggtttccagcatcgataag
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                        tcaaTGTAGATAATGTTC--TTCATTTCAATGATGCTctcacactggttctttaatgtgttttcatgcgacgcacgcacgtacgcat
gi|16                         :     TCAAAATGTTTACTGCA--GGGT-GTATTACTAACagcattgtttaacagaattatacatgtacatattaattac
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      aaaTC-TG--GAGTT-CCGAAGTTCTGAGATTGGTATAGATCTAGCCTTTTCT------AT---AGCGATA-TCTATTAAATTTTTCGGATA---TT--T-CTGTC-TAAGTA-AA---AATGTT-GT--TAATTCCT--GTAGACGTTTATT--CCTTC--TGTTT-TCA---T-C-AA-----------CG--ACGATGG---TAC-AA-ACAC-GTC-TCGC---CATGTTAAACGGTATGTTGCGTTTAACATGTGAGGGA--TGA-CAAGAAT-TGAATATC-A--G---GTACTGGT--GCGAGTCCGTTT-TC--TTGTAGTATAA---ATCCGT-TGTA------ATTTTCCTGTCTTCTTTTATTACGA--GG----AT------ATCCAA-AAAAGGT------T--TTCT-GTGCTGCTTG-TTTCC-A--CCGTAAATTGAA-TCGAGGGA-TG---TAAACTGTTCAACATAT----TGTGAA---AGT--CTTCTAA----ATCTTTATG--TGATTT--G--GCCAAAA-AATGAAACAATCGTCTA
gi|3                          :       AAAATGTTTACTGCA--GGGTCGTATTCCTGACGGATGGGGTCCCCGTATTTGTTGCTTGTG-ACTCTCACACGGTCAGCTAACTTAGTTCCGGGTCTGTCCTATTGTAAT-TTT-TCCGCAGGA-GGTACAAATTCATGACAATATATTAAATTCCTGGATTTA----CA-GACATATTCGTTCGAAATGGTGAAACGTTTTACCAC--ATTTAAAAGTTTGAAAGTACGTCCTGTTTTTAAATAAGGGG--CAGTTACCACAACGGGGATCCATACATTTTGGAAAACT-G-CAG---TT--TTC---T---TCAATGGTGTGGAAAATTT-GCTCTT------GTCAGTAGTTTCTTTA-GATTTAGAGGAGGT--TGACGTCGACTGATGATAA-GTTC--CTCATTTCAATGATGCTCCT-----TAGA---TTTCGGATTGTTG----TAAAATCGGAAAGCA-TTGTTTAACAGAATTATACAT-ATT--AATA--TTACGGGGA--------GTGAGTTAAC-GACCGAGGGG--G-AT-T--TGTT---TTT--TCTGA--TTTCATCCTGAG--TTCCCGA--TTCGTG--GAGTT--CGAAGTTCTGAGATTGGTATAGATCTAGCCTTTTCT------AT---AGCGATAGTCTATT-AATTTTTCGG-TA-T-TT--T-CTGTC-TAAGTA-AA---AATGTT-GT--TAATTCCTTGTTAGAC--TTATT--C--TC--TGTTT-TC------C-AAA----------CG--A-GATGG---TACAAA-ACAC-GTCTTCGC---CATGTTAAACGGTATGTTGCGTTTAACA-GTGAGGGGATTGACCAAGAAT-TG-ATATC-A--G---GTACTG-T--GCGAGT-CGTTT-TC--TT-T-GTAT-A---ATCCGT-TGTA------ATTTTCCT-TCTTCTTTTATTACGAAGGA----AT------ATCCA--AAAAGGT-G---TC--ATCT-GTGCTGCTTG-TTTCCAA--CCGTAAATTGAA-TCGAGGGA-TG---TAAACTGTTCAACATATATTGTGTGAA---AGT--TTTCTAA----ATCTTTCAG--TGATTT--GGACCCAAAA-AA-GAAACAATCGTCTAaatatcgcttccagttagattttatgtattgcgcaaattgatttccaaataatctgtctgtgttatcaaatatttctcctctaggaatcctagtactagggtagcatatgttggggcgactttatacccatggctgttccttttatttgtaagaatgtttgttgtcgaacataaaatagttattctcgagtactaattttaattcctctaagataaagtctttggaaaatctaggattaatttcgctttggtgttatcgatccagaatgcaattgcttctaatcctaaagtatgtggtatgttgggtatacaagaagtgacatcaaaactaagccattgttggtattcaacctcaactgttctgggaattggctgaggaaatctaaaatcgtccctttatgtagcttgtacaacagttgacagaaaaataaaatggcttaagaagtatgttaataattgctagagtcgtgggtggaacagacgggttccggctaccaattggtcgaagctttaaat
gi|4                          :     TCAAAATGTTTACTGCA--GGGT-GTATTCCTGACGGATGG---TCCCGTATTTGTTGCTTGTGGACTCTCACACGGTCAGCTAACTTAGTTCCGG-TCTGTCCTA-TGTAAT-TTTCTCCGCAGGA-GGTACAAA-TCATG-CAATATATTAAATTCCTGGATTTA----CATGACATATTCG-TCGAA-TGGTGAAA-GTTTTACCAC--ATTTAAAAG-T-GAAAGTATCTCCTGTTTTTAAATAAGG-G--CAGGTACCACAACGGGGATCCATACA-TTTGGAAA--CTG-CAG---TTTTTTC---T---TCAGTGGT-T-GAAAATTTGGCTCTT------GTCAGTAGTTTCTTTA-GATTAG---GAGGT--TGACGTCGACTGTAGATAATGTTC--CTCATTTCAATGATGCTCCT-----TAGAT-TTTTCGGATTGTTG----TAAAATCGGAAAGCA-TTGTTTAACAGAATTATA-AT-ATT--AATA--TTAC-GGGAT------TGTGAG-TTAC-GA-CGAGGGG--G-AT-T--TG-T---TTT--TCTGA--TTTCATCCTGAG--TTCCCGATTTTC-TG--GAGTT-CCGAAGTTCTGAGATTGGTATAGATCTAGCCTTTTCT------AT---AGCGATA-TCTATTAAATTTTTCGGATA---TT--T-CTGTC-TAAGTA-AA---AATGTT-GT--TAATTCCT--GTAGACGTTTATT--CCTTC--TGTTT-TCA---T-C-AA-----------CG--ACGATGG---TAC-AA-ACAC-GTC-TCGC---CATGTTAAACGGTATGTTGCGTTTAACATGTGAGGGA--TGA-CAAGAAT-TGAATATC-A--G---GTACTGGT--GCGAGTCCGTTT-TC--TTGTAGTATAA---ATCCGT-TGTA------ATTTTCCTGTCTTCTTTTATTACGA--GG----AT------ATCCAA-AAAAGGT------T--TTCT-GTGCTGCTTG-TTTCC-A--CCGTAAATTGAA-TCGAGGGA-TG---TAAACTGTTCAACATAT----TGTGAA---AGT--CTTCTAA----ATCTTTATG--TGATTT--G--GCCAAAA-AATGAAACAATCGTCTAa
gi|5                          :      CAAAATGTTCGCTGCA--CGGG-GTGTTCCTAACAC-TGGGATCTTTA-ATTTGCTGTTTATGTACCCTCACTCGCGCA-TTAAGTTTGTT---GGTTTGTCCTA-TATAGTATTT-TCCAAAGGTTGGGA-AAG-TGGC-ACAGTAAATTAAATT--TGCAGTTAATCGCG-GA---ATTGACTCTTAATA---------TTTACC-CGGATTTGAGAG-TT-AATGAATCACCTTCTTCTATATATCCA---CATGTCCTGCACCGTGGGTCACCACA-TTTTTTGA--C-A-CA----TTTCTCC---TGATTCAGCGAT------AATTTGGCTCTT---CTAGTTAGGAGTTTTTTAA-GGCT-----TAGCTCTTGACGTCGGCTTTTGATAAT-TTCTGCTAATTTT-ATAACATT--T-----TA-ATATTGTTGGATTGTTA----TAAAATTGGAAAATA-TCGTTTACCTGTATTCGAGAT-ATT--GTGG--TTCCTTGGAT------TATGTG-TGAT-AA-AGAAAGGTAC-AT-TAATG-T---TGTCATTTGA--GTTT-TTCTGA------CTGATTTTC-TG--GAGTT-CC---------AAATTGGTATTTTTTCTGCTTGTTGG------ATTCCAGCG----TTGATCAGGTTTTATGGGTAGTGTT--G-TTGTC-T---TA-AATG-AATCT---T--TAATTCCT--CTAATC-TCTATCTATCTT---TGCCT-TTA---TAT-AATATTGAATAGGTG--ATGATGC---TGC-AA-ATAT-GTC-TGAG---CATATTGTTTGAAATATTATGTTTTGTGTGTGAC-GG--TGA-CATGATC-TGAA-ATCTA--G---ATATTGAT--GAGTGTCCGTTT-CT--TTGCTGTATAA---ATCGGT-TGTA------ATGAGAGTGCCCTCTTTTATGATAA--AC----AA------ATCCAG-AAATGGTGT---AT--TTTTAGTATCG---G-ATTCC-A--TTGTGAATTGGA-TTGATTCA-TG---TATATTATTTAA---AT----TG-GAA---TGTAATTATTGA-CG-ATCCTCGTG--GTATTTC-G--TCCAGAA-AATGAAGCAATCATCTA
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                 cgTTTTTT----TAAAACTG--AATCC-TTGTCTGG--ATATTTCAGATAGTTTGGTGAAGTTCCTGGGATGAACTTTGTGC--TGGCTAA-CGAAAGG--TCAT-T--CG-TAAGTGT--TCT-------TAT--TGAC--GTTCTAAC---------GGTTT-CATGAGTTTTGAAATTGGTATTTTTTCTGC--TTGCTGG----ATTCCAGCAGTG----ATAAAATTGTTCGG-TAGTACTAGT-TTGTC-T---TA-GATTGAATCTTAGT--TAAGTTCT--CTAA-----TATT----TTC--TAACA-TAACGCT-T-AAT----------CG--GAGATTG---CGC-GGTATACTGTCGTGGCAAATATGTAGAATTTTACTTTG-GTTT------TGACGA---TGA-CA-GATTCTGAA-ATCTA--GACTGTATTGATTAGAGTGTCCGTTTCTT--TTGC-CTATAA---ATCGAT-TGTA------ATGTGA--GTC--CCTCTA--ATGA--GAATATAT------ATCCAGAAAATGGTAG---AT--T--T-GTAGTACTCGACTTCC-GATTTGTGAATTGAATTCGATTCACTG---TAGATTGTTTA--ATAT----TGGGAATGCAAT--TTTGGAAGG--ATCTTCATGTTTG-TTC--A--TTCAGAA-AATa
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            tttaaaaatatcttactatgtctagtactgatGGG--TGA-CAGGAAT-TAAACATA-A--G---GTATTTAT--CTG--TCAATTT----------GTAGAACACGTCTGT-TACT------ATGCGGTTGTCTCTTTTAATAACCA--TG----AC------ATCAAA-AAAGGACAGC--ATAATTCT-AT--TG---G-ACTCC-A--TGGTAAATT----TCAAGGTA-GGACTTAGCGTATTAAGAATAT----TGAAAA---ACT--CCGTTAA-CTGGTCTTC-----TCCTCT--G--TCCCAAATAATAAAACAATCGTCCAtgtattaattcgcagtctttcactgcatgtgttaaccaaagcattgtacaatatattatcccagttcctctaaaaattcataaagttaattcaaaaggtgaaaatcgatgcgacttggtaccctattgcgttccctcgttatgttggaagataaataattggcgcgaaattgaaaatgagtataaacattctaaaatatgatccaagactcatgatatgagtcttgaaaatcctcattaatttcttgtcatggcgtattttttcaattcatacttccacagcttcttcc
gi|8                          :                                                                                                                                                                                                                                            tgttttGTTTTGAAAAAAGAAATACAGGTGCAACAACGAAGGCCCTGACA-TTTGGAGA--C-GGTAGATATTTCTTT---T---TCAA--AT-T-TAAA-TTTGGCTTTTTAAC-ACTAAGAAGTTTCTTCA-AATTT----GATGTA-T----TCTACAATACATGATGTCC--TTTTCTTGAATAATTTCCTT-----TAAAT-TTCTCG-ATTGTTG----GAGTACTGGGAACCAATTGTTC-GTTGTATTGAAGAT-GTT--GTGA--TTCCTGGGAT------TATGGG-TGAT-GA-CAAAAGG--G-AT-T--TA-T---CTG--CGTAAAGTTTTA----GA----TTCTGTCTTTC-TGTTGACTTCCCGTAATTCTGTAATTGGCAT-----TTG-TTTTTCT------TTT---G-GGTA-GCT-TTAA----TTGGGATA---TT--T-TTGAC-GATGGATAT---AATCTT-CTTCTAA-TCTT--CTAATC-TT--TT--ATTTCAAAGTTT-T-----T-C-AAT----------CGTAACTATGG---TGC-AG-ATGT-TCC-TGGC---TAAGTTAAAAAGTATGTTCTGTTTCGaaaaacgtttccatgactgttttaaaaagatatcaaagtcttgtccaaatgtttctcgaactgtagaaaataatttctcttccaaatatcctaaaaccaatgtcgcataagttggggcaactttggtttccatggcagtgcctagcttctgtcttgtaaattttaagttagtttcatctaaaagcatgaaagttctttttccaagattaattttaagacttgatatgacgaattcttaggaaatctctcgtgataaaagatgaggaaaacggtctatccaatattcatggcggctagtccgaggtcatgaggaatatttagaatagaggttcgttgacatcaaatggagactgatatggattccgagttaatttcctctggaaataggtgatctaaaaagtctacggtgtctctgatgtaactctgtactttggtgatgaatggtttcagcaataaatctaagagataactaattctgtgggtttcgcaggtgggtcccgcgacaatgggtctaattttaagatc
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             gTGTTTAGCTGTATTCAAGAT-GTT--ATGA--TTCCTTGGAT------TATGTG-TGTT-AA-CGAAAGG--T-ACAT--TG-T---TGT--TCTTA--TT------TGAGTTTTTCTGA----C-TG--GTTTT-CCGAAGTTC
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          taaTGC---TGC-AA-ATAC-GTC-TGGC---CATATTGaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgctgctgcaaatacgtctggccatattgt

Unaligned ( gi|12 ): AATTGTTCACAGCTTATTACTGACACTTGGATCTGTAATTTGTTTGTGGACCTGAACTCCTACATTAATTTACCAGTTTGCCTGAATATGGAATTTTTTAATGTTGGACAAAAAGCACAAAAGATCTGATTTTCAGTTGATTG
Unaligned ( gi|13 ): TTTCCTCTAAAAATCTCATAAAGTTAATTTAATGAGTGTGGAATAAGTCGAAGTGACTTTGGTACCAATTGCAGTTCCCTTAGTTGGAAAGTAAAA

lowQualScore                  :                      11                      11                     2                                         1      1   1         1        1111111                        3333333          1        1111111          11         1111                         22222                                   222222222222       1111111       22222              333333                    222222     1                                               22222                    1111                                                           111111                      1111          111        222222222222   2222      11                                   222             33333333333    11111                   333                     111      11111              2222222222222           44444444444444444444444              111           1                               11111             1            1   1                             11111   22                    111111                         2222222222222222              222222222    1      222                                   111                 1111                     3333      22222222   11          1                 
lowQualScore                  :                      11    8             7   00      7              6               6           6   6         3      3   3         3    6   8888888              6         2222222  6       2     7  4444444        7 88         8888                         77777     0 22     0      11   8      1 333333333333  44   9999999    6  77777   0   3      555555  1  1        1     000000     5 8            1     3    99  1    1 3   1   5  00000  99 0      5       4444        44  3  6      0  1     22 0  5   77    77    3     999999    1 6    6  6       6666  6 99  6 111 1 99   444444444444   3333   0  99   5  66  1  5   1                 222 0 1 99      44444444444    44444 1     2        9  111  8888     6666   5  777   0  22222   1    77    2222222222222   77      00000000000000000000000  8888        333  5    5   0    888         0         1    11111    1  777   0  5  0 5    3   5 66 888      3 9999 1        11111   55      888   1  5    444444   8888    22       2  1 8888888888888888     77   1   777777777    0  99  111 66    5 66 2       2  5      1 5  777    2    0 88    0000  6   888 4 66  11   8888      33333333   11 66       0                 
lowQualScore                  :                      ..    .             .   ..      .              .               .           .   .         .      .   .         .    .   .......              .         .......  .       .     .  .......        . ..         ....                         .....     . ..     .      ..   .      . ............  ..   .......    .  .....   .   .      ......  .  .        .     ......     . .            .     .    ..  .    . .   .   .  .....  .. .      .       ....        ..  .  .      .  .     .. .  .   ..    ..    .     ......    . .    .  .       ....  . ..  . ... . ..   ............   ....   .  ..   .  ..  .  .   .                 ... . . ..      ...........    ..... .     .        .  ...  ....     ....   .  ...   .  .....   .    ..    .............   ..      .......................  ....        ...  .    .   .    ...         .         .    .....    .  ...   .  .  . .    .   . .. ...      . .... .        .....   ..      ...   .  .    ......   ....    ..       .  . ................     ..   .   .........    .  ..  ... ..    . .. .       .  .      . .  ...    .    . ..    ....  .   ... . ..  ..   ....      ........   .. ..       .                 
lowQualScore                  :                      00    0             3   33      3              7               7           7   7         3      3   3         3    7   0000000              7         3333333  7       0     3  3333333        3 33         3333                         55555     8 22     2      88   0      4 222222222222  00   0000000    4  44444   8   2      888888  4  0        0     888888     0 0            0     2    22  0    0 2   7   0  00000  44 8      0       2222        00  3  7      1  9     00 7  7   99    99    2     222222    0 7    7  7       8888  7 22  7 777 0 22   777777777777   0000   7  22   0  99  0  0   0                 000 4 0 66      11111111111    33333 3     3        3  333  0000     7777   7  999   7  33333   4    99    9999999999999   99      77777777777777777777777  4444        888  0    0   0    888         4         7    88888    0  111   0  9  8 0    1   5 99 888      9 0000 0        99999   44      888   4  0    444444   0000    99       8  4 1111111111111111     22   0   666666666    0  99  888 00    0 99 2       5  0      0 0  555    2    2 55    6666  6   888 5 99  44   8888      99999999   99 99       0                 
consensus                     :     TCAAAATGTTTACTGCA--GGGT-GTATTCCTGACGGATGGGGTCCCCGTATTTGTTGCTTGTG-ACTCTCACACGGTCAGCTAACTTAGTTCCGGGTCTGTCCTA-TGTAAT-TTT-TCCGCAGGA-GGTACAAA-TCGCGACAATATATTAAATTCCTGGATTTA----CG-GACATATTCGCTCGAAATGGTGAAA-GTTTTACCAC--ATTTAAAAG-TTGAAAGTATCTCCTGTTTTTAAATAAGGAG--CAGGTACCGCAACGGGGGTCCNTACA-TTTGGAGA--C-G-CAG---TTTCTTC---T---TCAGCGAT-T-GAAAATTTGGCTCTT---C-AGTCAGNAGTTTCTTNAGATT-T----GAGGTCT-GACGTCGACTGTNGATAATGTTC--CTCATTTCAATGATGCTCCT-----TAG-ATTTTTCGGATTGTTG----TAAAATCGGAAANCA-TTGTTTAGCTGTATTNNAGAT-GTT--GTGA--TTCCTGGGAT------TGTGNG-TGAC-GA-CGAAAGG--N-AT-T--TG-T---TNT--TCTGA--TTTTATCCTGAG--TTTCCGACTTTC-TG--GANTT-CCGAAGTTCTGAGATTGGTATAGATCTNGCCTTTTCT------ATTCCAGCGATA-TCTATTAAATTTTTCGGATAGT-TT--T-CTGTC-TAAGTA-AA---AATCTT-GT--TAATTCCT--CTAGAC-TTTATT--CCTTC--TGTTTT-CA---T-C-AAT----------CG--ACGATGGTGC---AA-ATAC-GTC-TGGC---CATGTTGAACGGTATGTTGCGTTTNGCGTGTGANGGG--TGA-CANGAAT-TGAATATCTA--G---GTATTGAT--GNGTGTCCGTTT-TC--TTGC-GTATAA---ATCCGT-TGTA------ATGCGNCTGTCTTCTTTTATNACGA--GG----AT------ATCCAG-AAANGGTAG---AT--TTCT-GTGCTGCTTG-NTTCC-A--TCGTAAATTGAA-TCGAGGNA-TG---TAGACTGTTCAANATAT----TGTGAA---AGT--CTTCTAA-C--ATCTTCGTG--TGATTT--G--TCCAAAA-AATGAAACAATCGTCTA
Reference ( family-1292 )     :     TCAAAATGTTTACTGCA--GGGT-GTATTCCTGACGGATGGGGTCCCCGTATTTGTTGCTTGTG-ACTCTCACACGGTCAGCTAACTTAGTTCCGGGTCTGTCCTA-TGTAAT-TTT-TCCGCAGGA-GGTACAAA-TCGCGACAATATATTAAATTCCTGGATTTA----CG-GACATATTCGCTCGAAATGGTGAAA-GTTTTACCAC--ATTTAAAAG-TTGAAAGTATCTCCTGTTTTTAAATAAGGAG--CAGGTACCGCAACGGGGGTCCNTACA-TTTGGAGA--C-G-CAG---TTTCTTC---T---TCAGCGAT-T-GAAAATTTGGCTCTT---C-AGTCAGNAGTTTCTTNAGATT-T----GAGGTCT-GACGTCGACTGTNGATAATGTTC--CTCATTTCAATGATGCTCCT-----TAG-ATTTTTCGGATTGTTG----TAAAATCGGAAANCA-TTGTTTAGCTGTATTNNAGAT-GTT--GTGA--TTCCTGGGAT------TGTGNG-TGAC-GA-CGAAAGG--N-AT-T--TG-T---TNT--TCTGA--TTTTATCCTGAG--TTTCCGACTTTC-TG--GANTT-CCGAAGTTCTGAGATTGGTATAGATCTNGCCTTTTCT------ATTCCAGCGATA-TCTATTAAATTTTTCGGATAGT-TT--T-CTGTC-TAAGTA-AA---AATCTT-GT--TAATTCCT--CTAGAC-TTTATT--CCTTC--TGTTTT-CA---T-C-AAT----------CG--ACGATGGTGC---AA-ATAC-GTC-TGGC---CATGTTGAACGGTATGTTGCGTTTNGCGTGTGANGGG--TGA-CANGAAT-TGAATATCTA--G---GTATTGAT--GNGNGTCCGTTT-TC--TTGC-GTATAA---ATCCGT-TGTA------ATGCGNCTGTCTTCTTTTATNACGA--GG----AT------ATCCAG-AAANGGTAG---AT--TTCT-GTGCTGCTTG-NTTCC-A--TCGTAAATTGAA-TCGAGGNA-TG---TAGACTGTTCAANATAT----TGTGAA---AGT--CTTCTAA-C--ATCTTCGTG--TGATTT--G--TCCAAAA-AATGAAACAATCGTCTA
gi|1                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TT-TG--AATTT-CCGGAGTTCCAAAATTGGAAT---TTTTG--TTTGCTTGTTGGATTCCAGCG----TTGATCAGGTTTTCTGGGTAGT-GC--TGCTGTCATAAATG-AA-----TCTT-----TAATTCCT--CT-GAT-CT------CTTTC--TACGTAACG---T-TGAAT----------CG--GTGATGGTGCTGCAA-ATAC-GTC-TGAC---CATATTGTATGGAATATTACGTTTTGTGTGTGACGGG--TGA-CATGATC-TGAA-ATCTA--G---ATATTGAT--GGGTGTCCGTTT-CT--TTGCTGTATAA---ATCAGT-TGTA------ATGCGAGTGCCCTCTTTTATGATCT--GA----ATCAACAAGTCCAG-AAATGGTAG---AA--TTCTAGTACTGT----CTTCC-A--TTGTGAATTGAA-TTGATTCA-TG---TAGATTATTCAAAATGG----AATGAA---A-T--GTTTGAA-G--ATCCTCGTG---GTTTTTCG--TCCAGAA-GATGAAGCAATCATCTA
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            tacattgttgttgtcaGG--TGAACAGGAAT-TAAACA-ATAACG---GTATTGCT--TGGTATCTGCCT-TCAATTG---TAGAA---CACCGTCTGTATTACGTATGCGGTTGTCT-CTTACATACCCATCGG-----C------ATCAAG-AAAGGACAGCATAT--TTCT-AT--TG---G-ACTCC-A--TGGTAAATT----TCAAGGTA-GGACTTAGCGTATTAAGAATAT----TGAAAA---ACT--CCGTTAA-CTGGTCTTC--------TCT--G--TCCCAACTAATAAAACAATCGTCCAagtaacgtttccagttttcacgtatgtatttcccaaagtctgcgtcaaatatttccggtaaagtgttatatatcctttcctctattttaaaaattccataaagagtgtggcataggtcggagcgactttggtacccattgcagtccccttagtttggaggtaaaattgtacgttaaattggaaatgattattttctaatacgagtttaagacattagatgatgaagtctttggaaaatctttcattaatttctgtaggatatttctcgatccagtacttaacagcttcattctattcctagatcatgtggaatatttgtatatagactagaaacatcgaaactgacaagaatggtttcgggttgcactgtttttggaatgtaattcaagaaatccatatcatccgaacatagctcggcacttttttacatagaggttttaaaataatgtctaaaagattacttagcctctgcgcgctagaatgaaggtcctgctattatggggcgtaacttgaggtc
gi|11                         :                                                                                                                                                                                                                                                                             gtatgttttgggtcATA-TTTGTATA--C-A-TTG---TATATTCAGAT---TCAGCGA-----GAAATTTA---CTG---T-AGCTAGGAATTTTTTAAAGCC-T----GATGCCT-GACGTCGGCTGGTGATA--GTT-------------TGA-GCTGCTTTATCTAT-ATTTTCCTTATTGTTGGACTTAAAATC-----------ATTTAGCTATATTGAAGAT-ATT--GTGA--TTaaaaacgtttcca
gi|14                         : ttatcCAAAATGTTTGCTGCACTGGGT-GTgtttggtttctgacaagcttttccgaagtcttgaaattggcatattttctgcttgctggtttccagcatcgataag
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                        tcaaTGTAGATAATGTTC--TTCATTTCAATGATGCTctcacactggttctttaatgtgttttcatgcgacgcacgcacgtacgcat
gi|16                         :     TCAAAATGTTTACTGCA--GGGT-GTATTACTAACagcattgtttaacagaattatacatgtacatattaattac
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      aaaTC-TG--GAGTT-CCGAAGTTCTGAGATTGGTATAGATCTAGCCTTTTCT------AT---AGCGATA-TCTATTAAATTTTTCGGATA---TT--T-CTGTC-TAAGTA-AA---AATGTT-GT--TAATTCCT--GTAGACGTTTATT--CCTTC--TGTTTT-CA---T-C-AA-----------CG--ACGATGGTAC---AA-ACAC-GTC-TCGC---CATGTTAAACGGTATGTTGCGTTTAACATGTGAGGGA--TGA-CAAGAAT-TGAATATC-A--G---GTACTGGT--GCGAGTCCGTTT-TC--TTGTAGTATAA---ATCCGT-TGTA------ATTTTCCTGTCTTCTTTTATTACGA--GG----AT------ATCCAA-AAAAGGT------T--TTCT-GTGCTGCTTG-TTTCC-A--CCGTAAATTGAA-TCGAGGGA-TG---TAAACTGTTCAACATAT----TGTGAA---AGT--CTTCTAA----ATCTTTATG--TGATTT--G--GCCAAAA-AATGAAACAATCGTCTA
gi|3                          :       AAAATGTTTACTGCA--GGGTCGTATTCCTGACGGATGGGGTCCCCGTATTTGTTGCTTGTG-ACTCTCACACGGTCAGCTAACTTAGTTCCGGGTCTGTCCTATTGTAAT-TTT-TCCGCAGGA-GGTACAAATTCATGACAATATATTAAATTCCTGGATTTA----CA-GACATATTCGTTCGAAATGGTGAAACGTTTTACCAC--ATTTAAAAGTTTGAAAGTACGTCCTGTTTTTAAATAAGGGG--CAGTTACCACAACGGGGATCCATACATTTTGGAAAACT-G-CAG---TT--TTC---T---TCAATGGTGTGGAAAATTT-GCTCTT------GTCAGTAGTTTCTTTAGATT-TAGAGGAGGT-T-GACGTCGACTGATGATAA-GTTC--CTCATTTCAATGATGCTCCT-----TAG-A--TTTCGGATTGTTG----TAAAATCGGAAAGCA-TTGTTTAACAGAATTATACAT-ATT--AATA--TTACGGGGA--------GTGAGTTAAC-GACCGAGGGG--G-AT-T--TGTT---TTT--TCTGA--TTTCATCCTGAG--TTCCCGA--TTCGTG--GAGTT--CGAAGTTCTGAGATTGGTATAGATCTAGCCTTTTCT------AT---AGCGATAGTCTATT-AATTTTTCGG-TA-T-TT--T-CTGTC-TAAGTA-AA---AATGTT-GT--TAATTCCTTGTTAGAC--TTATT--C--TC--TGTTTT-C------C-AAA----------CG--A-GATGGTACA--AA-ACAC-GTCTTCGC---CATGTTAAACGGTATGTTGCGTTTAACA-GTGAGGGGATTGACCAAGAAT-TG-ATATC-A--G---GTACTG-T--GCGAGT-CGTTT-TC--TT-T-GTAT-A---ATCCGT-TGTA------ATTTTCCT-TCTTCTTTTATTACGAAGGA----AT------ATCCA--AAAAGGT-G---TC--ATCT-GTGCTGCTTG-TTTCCAA--CCGTAAATTGAA-TCGAGGGA-TG---TAAACTGTTCAACATATATTGTGTGAA---AGT--TTTCTAA----ATCTTTCAG--TGATTT--GGACCCAAAA-AA-GAAACAATCGTCTAaatatcgcttccagttagattttatgtattgcgcaaattgatttccaaataatctgtctgtgttatcaaatatttctcctctaggaatcctagtactagggtagcatatgttggggcgactttatacccatggctgttccttttatttgtaagaatgtttgttgtcgaacataaaatagttattctcgagtactaattttaattcctctaagataaagtctttggaaaatctaggattaatttcgctttggtgttatcgatccagaatgcaattgcttctaatcctaaagtatgtggtatgttgggtatacaagaagtgacatcaaaactaagccattgttggtattcaacctcaactgttctgggaattggctgaggaaatctaaaatcgtccctttatgtagcttgtacaacagttgacagaaaaataaaatggcttaagaagtatgttaataattgctagagtcgtgggtggaacagacgggttccggctaccaattggtcgaagctttaaat
gi|4                          :     TCAAAATGTTTACTGCA--GGGT-GTATTCCTGACGGATGG---TCCCGTATTTGTTGCTTGTGGACTCTCACACGGTCAGCTAACTTAGTTCCGG-TCTGTCCTA-TGTAAT-TTTCTCCGCAGGA-GGTACAAA-TCATG-CAATATATTAAATTCCTGGATTTA----CATGACATATTCG-TCGAA-TGGTGAAA-GTTTTACCAC--ATTTAAAAG-T-GAAAGTATCTCCTGTTTTTAAATAAGG-G--CAGGTACCACAACGGGGATCCATACA-TTTGGAAA--CTG-CAG---TTTTTTC---T---TCAGTGGT-T-GAAAATTTGGCTCTT------GTCAGTAGTTTCTTTAGATTAG----GAGGT-T-GACGTCGACTGTAGATAATGTTC--CTCATTTCAATGATGCTCCT-----TAG-ATTTTTCGGATTGTTG----TAAAATCGGAAAGCA-TTGTTTAACAGAATTATA-AT-ATT--AATA--TTAC-GGGAT------TGTGAG-TTAC-GA-CGAGGGG--G-AT-T--TG-T---TTT--TCTGA--TTTCATCCTGAG--TTCCCGATTTTC-TG--GAGTT-CCGAAGTTCTGAGATTGGTATAGATCTAGCCTTTTCT------AT---AGCGATA-TCTATTAAATTTTTCGGATA---TT--T-CTGTC-TAAGTA-AA---AATGTT-GT--TAATTCCT--GTAGACGTTTATT--CCTTC--TGTTTT-CA---T-C-AA-----------CG--ACGATGGTAC---AA-ACAC-GTC-TCGC---CATGTTAAACGGTATGTTGCGTTTAACATGTGAGGGA--TGA-CAAGAAT-TGAATATC-A--G---GTACTGGT--GCGAGTCCGTTT-TC--TTGTAGTATAA---ATCCGT-TGTA------ATTTTCCTGTCTTCTTTTATTACGA--GG----AT------ATCCAA-AAAAGGT------T--TTCT-GTGCTGCTTG-TTTCC-A--CCGTAAATTGAA-TCGAGGGA-TG---TAAACTGTTCAACATAT----TGTGAA---AGT--CTTCTAA----ATCTTTATG--TGATTT--G--GCCAAAA-AATGAAACAATCGTCTAa
gi|5                          :      CAAAATGTTCGCTGCA--CGGG-GTGTTCCTAACAC-TGGGATCTTTA-ATTTGCTGTTTATGTACCCTCACTCGCGCA-TTAAGTTTGTT---GGTTTGTCCTA-TATAGTATTT-TCCAAAGGTTGGGA-AAG-TGGC-ACAGTAAATTAAATT--TGCAGTTAATCGCG-GA---ATTGACTCTTAATA---------TTTACC-CGGATTTGAGAG-TT-AATGAATCACCTTCTTCTATATATCCA---CATGTCCTGCACCGTGGGTCACCACA-TTTTTTGA--C-A-CA----TTTCTCC---TGATTCAGCGAT------AATTTGGCTCTT---CTAGTTAGGAGTTTTTTAAGGCT-T-----AGCTCTTGACGTCGGCTTTTGATAAT-TTCTGCTAATTTTA-TAACATT--T-----TAATATTGTT-GGATTGTTA----TAAAATTGGAAAATA-TCGTTTACCTGTATTCGAGAT-ATT--GTGG--TTCCTTGGAT------TATGTG-TGAT-AA-AGAAAGGTAC-AT-TAATG-T---TGTCATTTGA--GTTT-TTCTGA------CTGATTTTC-TG--GAGTT-CC---------AAATTGGTATTTTTTCTGCTTGTTGG------ATTCCAGCG----TTGATCAGGTTTTATGGGTAGTGTT--G-TTGTC-T---TA-AATG-AATCT---T--TAATTCCT--CTAATC-TCTATCTATCTT---TGCCTT-TA---TAT-AATATTGAATAGGTG--ATGATGCTGC---AA-ATAT-GTC-TGAG---CATATTGTTTGAAATATTATGTTTTGTGTGTGAC-GG--TGA-CATGATC-TGAA-ATCTA--G---ATATTGAT--GAGTGTCCGTTT-CT--TTGCTGTATAA---ATCGGT-TGTA------ATGAGAGTGCCCTCTTTTATGATAA--AC----AA------ATCCAG-AAATGGTGT---AT--TTTTAGTATCG---G-ATTCC-A--TTGTGAATTGGA-TTGATTCA-TG---TATATTATTTAA---AT----TG-GAA---TGTAATTATTGA-CG-ATCCTCGTG--GTATTTC-G--TCCAGAA-AATGAAGCAATCATCTA
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                 cgTTTTTT----TAAAACTG--AATCC-TTGTCTGG--ATATTTCAGATAGTTTGGTGAAGTTCCTGGGATGAACTTTGTGC--TGGCTAA-CGAAAGG--TCAT-T--CG-TAAGTGT--TCT-------TAT--TGAC--GTTCTAAC---------GGTTT-CATGAGTTTTGAAATTGGTATTTTTTCTGC--TTGCTGG----ATTCCAGCAGTG----ATAAAATTGTTCGG-TAGTACTAGT-TTGTC-T---TA-GATTGAATCTTAGT--TAAGTTCT--CTAA-----TATT----TTC--TAACAT-AACGCT-T-AAT----------CG--GAGATTGCGC---GGTATACTGTCGTGGCAAATATGTAGAATTTTACTTTG-GTTT------TGACGA---TGA-CA-GATTCTGAA-ATCTA--GACTGTATTGATTAGAGTGTCCGTTTCTT--TTGC-CTATAA---ATCGAT-TGTA------ATGTGA--GTC--CCTCTA--ATGA--GAATATAT------ATCCAGAAAATGGTAG---AT--T--T-GTAGTACTCGACTTCC-GATTTGTGAATTGAATTCGATTCACTG---TAGATTGTTTA--ATAT----TGGGAATGCAAT--TTTGGAAGG--ATCTTCATGTTTG-TTC--A--TTCAGAA-AATa
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           tttaaaaatatcttactatgtctagtactgatGGG--TGA-CAGGAAT-TAAACATA-A--G---GTATTTAT----CTGTCAATTT----------GTAGAACACGTCTGT-TACT------ATGCGGTTGTCTCTTTTAATAACCA--TG----AC------ATCAAA-AAAGGACAGC--ATAATTCT-AT--TG---G-ACTCC-A--TGGTAAATT----TCAAGGTA-GGACTTAGCGTATTAAGAATAT----TGAAAA---ACT--CCGTTAA-CTGGTCTTC-----TCCTCT--G--TCCCAAATAATAAAACAATCGTCCAtgtattaattcgcagtctttcactgcatgtgttaaccaaagcattgtacaatatattatcccagttcctctaaaaattcataaagttaattcaaaaggtgaaaatcgatgcgacttggtaccctattgcgttccctcgttatgttggaagataaataattggcgcgaaattgaaaatgagtataaacattctaaaatatgatccaagactcatgatatgagtcttgaaaatcctcattaatttcttgtcatggcgtattttttcaattcatacttccacagcttcttcc
gi|8                          :                                                                                                                                                                                                                                            tgttttGTTTTGAAAAAAGAAATACAGGTGCAACAACGAAGGCCCTGACA-TTTGGAGA--C-GGTAGATATTTCTTT---T---TCAA--AT-T-TAAA-TTTGGCTTTTTAAC-ACTAAGAAGTTTCTTCAAATT-T----GATGTAT-----TCTACAATACATGATGTCC--TTTTCTTGAATAATTTCCTT-----TAA-ATTTCTCG-ATTGTTG----GAGTACTGGGAACCAATTGTTC-GTTGTATTGAAGAT-GTT--GTGA--TTCCTGGGAT------TATGGG-TGAT-GA-CAAAAGG--G-AT-T--TA-T---CTG--CGTAAAGTTTTA----GA----TTCTGTCTTTC-TGTTGACTTCCCGTAATTCTGTAATTGGCAT-----TTG-TTTTTCT------TTT---G-GGTA-GCT-TTAA----TTGGGATA---TT--T-TTGAC-GATGGATAT---AATCTT-CTTCTAA-TCTT--CTAATC-TT--TT--ATTTCAAAGTTTT------T-C-AAT----------CGTAACTATGGTGC---AG-ATGT-TCC-TGGC---TAAGTTAAAAAGTATGTTCTGTTTCGaaaaacgtttccatgactgttttaaaaagatatcaaagtcttgtccaaatgtttctcgaactgtagaaaataatttctcttccaaatatcctaaaaccaatgtcgcataagttggggcaactttggtttccatggcagtgcctagcttctgtcttgtaaattttaagttagtttcatctaaaagcatgaaagttctttttccaagattaattttaagacttgatatgacgaattcttaggaaatctctcgtgataaaagatgaggaaaacggtctatccaatattcatggcggctagtccgaggtcatgaggaatatttagaatagaggttcgttgacatcaaatggagactgatatggattccgagttaatttcctctggaaataggtgatctaaaaagtctacggtgtctctgatgtaactctgtactttggtgatgaatggtttcagcaataaatctaagagataactaattctgtgggtttcgcaggtgggtcccgcgacaatgggtctaattttaagatc
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             gTGTTTAGCTGTATTCAAGAT-GTT--ATGA--TTCCTTGGAT------TATGTG-TGTT-AA-CGAAAGG--T-ACAT--TG-T---TGT--TCTTA--TT------TGAGTTTTTCTGA----C-TG--GTTTT-CCGAAGTTC
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          taaTGCTGC---AA-ATAC-GTC-TGGC---CATATTGaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgctgctgcaaatacgtctggccatattgt