lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111 11111111111111111111111
lowQualScore : 1 11 111 11 1111 1111 11 22 2222 11111111 333 1111 5555555555555555555555555 11 1111 111 11 111 11111 111111 11111 333333333 6666666666666666666666666666 1 11 3333 2222222222222222222 111 1111 111111111 1 1111 11111 11111 11111 1111111111 11 2222222222222222 44444444444444 1111 55555555555555555555555555555555555555555555555555555555555555555555555 1 88888888888888888888888888 111111 222 111 7777777777 3 1111 22 11 111 222222 111 444444444444 1 22 1 222222222222 33333 222222 2222222 22 11 1 8888888888888888888888 1 11 8888888888888888888888888888888 2222 111 11 11 666666666666 1 555555555 1 11 2 44444444444 1 11 111 1 1 22222 4444 8888888888888888888888888888888888888888888888888 111 1 000000000000000000000000 555555 2222 333 2 4 1 1 111 1 2 2222 11 111 2 1 1 1 222 6666 44444444444 77777777777777777777777 22222222 1 1 11
lowQualScore : 0 3 999 11 6 222 00 5555 4 5 2222 55 5 77 5 5 66 5 888 55 4 9999 9 1 4 4 66666666 4 000 777 4 4 3 5555 5 5 5 5 555 5 0000000000000000000000000 0 11 1111 5 5 66 000 11 5 333 5 22222 5 777777 4 66 66 66 00000 555555555 4 4444444444444444444444444444 7777 4 2 8 22 66 5555 4 4 2 9999999999999999999 66 5 5 333 5 0000 0 77 999999999 3 8 6 9999 4 1 4 4 11111 3 33333 55 5555 7777 3 3 3 99999 55 4444444444 4 4 555 1 777 00 777 4 4 0000000000000000 4 9999 88888888888888 4 5555 5 3 6 99 99 99999999999999999999999999999999999999999999999999999999999999999999999 6 5 6 33333333333333333333333333 777777 555 999 11 66 8 8 1111111111 0 2 7777 8 8 44 8 11 222 5 6 8 8 777777 444 444444444444 0 33 0 6 7 3 5 333333333333 5 55555 5 5 0 99 555555 3 6 6666666 88 8 11 3 0 5555555555555555555555 777 0 3 99 1111111111111111111111111111111 0000 111 2 33 3 33 4 111111111111 0 111111111 3 0 33 2 1 77777777777 0 33 777 0 4 55 88888 3 0000 6666666666666666666666666666666666666666666666666 6 777 0 2 000000000000000000000000 666666 3333 666 6 7 0 3 5 444 7 0 0 1111 33 4 777 0 0 0 9 7 333 2222 3 3 44444444444 3 22222222222222222222222 22222222 8 0 0 11 8 8
lowQualScore : . . ... .. . ... .. .... . . .... .. . .. . . .. . ... .. . .... . . . . ........ . ... ... . . . .... . . . . ... . ......................... . .. .... . . .. ... .. . ... . ..... . ...... . .. .. .. ..... ......... . ............................ .... . . . .. .. .... . . . ................... .. . . ... . .... . .. ......... . . . .... . . . . ..... . ..... .. .... .... . . . ..... .. .......... . . ... . ... .. ... . . ................ . .... .............. . .... . . . .. .. ....................................................................... . . . .......................... ...... ... ... .. .. . . .......... . . .... . . .. . .. ... . . . . ...... ... ............ . .. . . . . . ............ . ..... . . . .. ...... . . ....... .. . .. . . ...................... ... . . .. ............................... .... ... . .. . .. . ............ . ......... . . .. . . ........... . .. ... . . .. ..... . .... ................................................. . ... . . ........................ ...... .... ... . . . . . ... . . . .... .. . ... . . . . . ... .... . . ........... . ....................... ........ . . . .. . .
lowQualScore : 0 2 666 00 0 333 33 2222 8 7 1111 99 7 99 7 7 66 0 888 66 4 2222 4 9 4 4 11111111 4 111 888 4 4 4 6666 0 0 0 0 444 0 5555555555555555555555555 1 99 4444 0 0 99 111 99 0 888 0 55555 0 333333 4 11 11 11 44444 888888888 4 2222222222222222222222222222 0000 4 7 9 00 11 9999 4 4 7 5555555555555555555 99 0 0 444 0 6666 7 11 000000000 3 9 0 7777 4 9 4 0 00000 6 99999 00 2222 7777 6 6 6 00000 55 4444444444 0 0 333 8 888 66 888 4 4 9999999999999999 4 4444 44444444444444 4 7777 0 4 7 22 22 22222222222222222222222222222222222222222222222222222222222222222222222 7 0 7 55555555555555555555555555 000000 777 333 66 22 0 0 2222222222 8 0 0000 0 0 88 0 00 222 6 0 0 0 222222 000 111111111111 9 99 7 3 1 9 7 222222222222 7 44444 7 7 3 22 333333 5 7 7777777 55 0 00 2 0 2222222222222222222222 555 0 2 00 8888888888888888888888888888888 0000 000 2 88 2 88 0 888888888888 0 888888888 0 0 88 5 5 88888888888 0 22 000 0 5 88 55555 2 8888 2222222222222222222222222222222222222222222222222 5 000 8 2 000000000000000000000000 000000 0000 777 7 3 0 3 0 555 0 0 0 0000 88 0 555 0 0 0 2 0 333 5555 2 2 88888888888 2 22222222222222222222222 00000000 0 0 0 00 0 0
consensus : TATCCAA-CTATTG-CGG--CCATCACG--TGA-CTTG-ATCAATTA-TT----TGTTNACCTATTA-AGA--GTACC-T-GTA-T-TTACTA---TAGG-C-GA-T-AACGGGGGA-G-T--------G-TGTG-A---TT-AAA-CTAT----TA-TA-ACT-TTT-TTCA-TGCA-T--T-ATATAG-AAT--A----A---AGTT--GGACCCCTGAC--CTG-AAA-GAGC--AT--TAA--T-T---CTACA-AAA-----GA-TGATAT---A-T-T--TTA--TTTC--AGTTCG----GAGA---A--ATGATT-TATTGC--------T------TCA----------TTTGAAAA-AT-AG-TGTGTA-TA-CG--T-TC-AAT-G-ATTAGCGTG---T---AAA------T--TAAC--GAGC-A-T--NCGGT-GAA----TTTTCGGCA-TTTTG-CG------TGT-AT-AAAAACG-TA-TTTTTCAACCT-TTT-T-T---CA-T--ATTT--CTGGAAAA--AAGTTG----GA-C-A-TCTAG----TGT--AAA-----AG--TTAAA-AC-ACT-AAAC---TAT--ATGAAAC---A-T-GAAAA--A---T--T------CAG-T----TCAGAA----C---N-AC--T-TT---ATTGCTTCAAAA-TCGTCTTGAAAAT-TAA--GAATTTT--CA-----------C--------CGATAT-TGAAA--T-T----CAAA-------------AT-----------GGCGGAC-GCAAC-CGGGAGTAAACAAA----GCG---AGC---GT------CATGTG--A-AAGTTGCGTTATTTT-AAA-TCTGTTTAATT-GTGTTAT-GAATA-AAGAC-GACAAGAAGAGA----AAATCATT-GCTTA-CCCATGAAGTT-C--AGAAATAT-CCTTTCCTTGACTGACCACA-AATA-CA-A-G-TGCT---TGCAAATGACTTTTGGG-NA-A-AACC--ATTGAAAATTCTTAGAAGCCACTTGTCTTTTACT-TGTACAAA------CA----AA-GGTT-TA-AT-CTACTCAA-TATA--TCATTTGA-NTTGT-TGTT-G-----AAGAATTTGTGGTTGTTTTAG-C--TATCCGATAATTGG-TT-GAAT-AGA-----TC-TAGA-GACTTA-TTTCATAATTAG-GAGCA-TGCATT--T-TACAA-G--TAATAAGAA--ATTG---GC-A-GGGAAAA--CACAGAATTTAAC--AGNGACACCTAACACCT-CAATTTCAACA-AAAGCCACG--AA-TTAAGTTAA-GC--ATGGAGG-TTATTCAT---GCATC-ATCAC-AAAAT-CAT--GAGGAT-CATAAGTATATCAAT-AA--TCGCATATTCAACATA--TTTTTTCAG----ACATA--TAATCC------C--------C--CTG----------TAAGATTTAAG--TTTCCATCGTAAT-AAAGAC---AAAAC-A-G-G-ATATTGTGC-C--GTGCT--NCTTCTG---TTT-AATACTTTGTAATCATATGAATTAAAA-TCTGATAAAAT-TNAAATCAAGGTGT-GA-ATGGG--GGTT--TTANG---GTAAA-TT-AACATCCCTGTAACTCATTACTT---CCCTACTGTCACCAGTAAAATATCTCGCGTATTTAATTCATCTG--A--------TACGAACTACCC-TTAGTCAACGAGG------ATAGTCTC-----A--T-TGTCAAAACAGAGTTATCG-GACCGAATTAT--GACC-GA-AATAGTTGGATA
Reference ( gi|2 ) : TATCCAA-CTATAG-CGG--TCATTACG--TGA-CTTA-AGCGATTA-TT----TGTTTACCTATTA-AGA--GTACC-T-GTAAT-TTACTA---TAGG-C-G--T-AACGGGGGA-G-T--------G-TGT--A---TT-AAA-CCAT----TA-TA-ACT-TTT-TTCA-TGCA-T--T-AT-TAG-AA---A----A---AGTT--GGACCCCTGAC--CCG-AAA-GAGC--AT--TAA--T-T---CTACA-AAA-----GA-TGATAT---A-T-T--TTA--TTTC--AGTTCG----AAAA---A--A--ATT-TATTGC--------T------TCA----------TTTGAAAA-AT-AG-TGTTTA-TA-TG--T-T--AAT-G-ATTAGCGTG---T---AA-------T--TAAC--GAGC-A-T--TTGGT-GAA----TTTTCGGCA-TTTTG-CA------TGT-AT-AGAA-CG-TA-TTTTTCAACCT-TTT-T-T---CA-T--GTAT--CTGGAAAA--AAGTTG----GA-C-A-TCTAG----AGT--AAA-----AG--TTAAA-AC-ATT-AAAC---TAT--ATGAAAC---A-T-GAAAA--A---T--T------CAG-T----TCAGAA----C---A-AC--T-TT---ATTGCTTCAAAA-TCGTCTTGAAAAT-TAA--GAATTTT--CA-----------C-------GCGATAT-T-------------CAAA-------------AT-----------GGCGGAC-GCCAC-CGGGAGTAAACAAA----GCGCTTAGC---GT------CATGTG--A-ATGTTGTGTTATTAT-AAA-TATGTTTAATT-GTGTTAT-GAATACAAGACTGACAAGAA-AGA----AAATCATT-GCTTA-CC-ATGAAGTT-C--AGAAATGT-CCTTTCCTTGACTGACCATA-AATA-C--A-G-TGCT---TGCAAATGACTTTTGGG-AATATAATC--ATTGGAAATTCTTAGAAGCCATTTGTCTTTTATT-TGTACAAA------CA----AA-GGTT-TG-AT-CTACTCAA-TATA--TCATTTGG-GTTAT-TGTT-G-----AAGAATTTGTGGTTGTTTTAG-C--TATCCGATAATTGG-TT-GAAT-CGA-----TC-TAGAGGACCTA-TTTCATAATTAT-GAGCATTGCATT--T-TACAA-G--TAAT-AGAATGATTG---GC-A-GGAAAAA--CACAGAATTTAAC--AGTGACACCTAA-ACCTCCAATTTCAACA-AAAGCCACGTTAA-TTAAGTTAA-GC--ATGGAGGTTTATTCAT---GCATC-ATCAC-AAAAT-CAT--GAGGAT-CATGAGTATATCAAT-A---TCGCATATTCAACAT---TTTTTTCA-----ACATG--CAATTC------C--------C--CTG----------TAAGATTTAAG--TTTTCATTGTA---AAAG-C---AAAAC-A-----ATATTGT---T--GTGCT--CTTTCTG---TTT-AATACTTTGTAATCATATGAA-TAAAA-TCTGATCAAAT-TAAAATCAAGGTGT-GA-ATGGG--GATT--TTAAG---GT-AA-TT-AACATCCCTGTAACTCATAACTT---CCCTACTGTCAC----AAAATATCTCGCGTATTTAATTCATCTG--A--------TACGAACTA-C-----GT--------------ATAGTCTC-----A--T-TGTCAAAACAGAGTTATCG-GACCTAATTAT--GACC-GA-AATAGTTGGATA
gi|1 : TATCCAA-CTATTGTCGG--TCATCACG--TGA--TTG-ATCAATCA-TT-----GTTACCCTATTA-A-A--GTACC-TTGTA-T-TTACTA---TAG--C-A--T-AAACGGGGA-GCT--------G-CGTGAA---TT-AAAACTAT----TAATAGACT-TTT-TTCAATGCA-T--T-AT--AC-AA---ATAATA---AGTTTAGGACCCCTGAC--CTGGAAA-AAGC--AT---AA--T-T---CTACAGAAA-----GA-TGA-ATCTGACT-T--TTA--TTCA--GGTTAG----GAGA---C--ATGATT-TATTGC--------T------TCAAAATTCGC--TTTGAAAA-AT-AG-TGTGTAGTA-GGATT-C--AAT-G--CTAGCGTG---T---AAA------T--TAAC--GAGC-A-T--TTCGTTGAA----TTTTCGGCA-TTTTG-GA------TGT-AT-AAAAACGGTA-TTTTTCAACCT-GTT-T-----CA-T--ATTT--CTGGGAAA--AAGA-G----GA-CCA-TCTAG----TGT--AAA-----AG--TTAAA-AC-ACT-AAATAGATAT--ATGAAAC---A-TAGAAAA--A---T--T------CAGCT----TCAGAGAACGC---A-TC--TATT---ATTGCTTCAAAA-TCGTCTTGAAAAT-TAA--TAATTTT--TA-----------C--------CGATAT-TG------------GAAA-------------ATGATCTTCTAAAGGCGGAC-GCAAC-C-GGAGTAAACAAA----ACGT----C---AT------GATATG--A-CAGTTGTGTTATTTTAAAA-TCTG-TTAATT-GTGTTATGGAATAGAAA---GACAAG-A-AGAGTACAAATCATTCGCTTA-CC--TAAGGTTGCGAAGAAATAA-CCTCTCCTTGAC-GACCACAGAATAGCAAA-G-TGCTAAATGCAA--GAC--TTGGC-GCTA-AACCAAATTGAAAATGGCTAGAAGCGCTTCGTTTTATACTATGATCAAATCAATTTA----AATGGTTATA-ATCCTACTCAAGTACAAGTCATT--G-ATTGT-TGTT-G-----GAAAA--TGT--TTGTTTTAGCC--TATTCGAT-ATTCG-TTGGAAA-AGA-----TCTTAGAGGACTTATTTTCATAA-TATGGAGCA-TGCATCGAT-TACAA-GATCAATAAGAA--ATTG---GC-A-GGGAAAA--CACAAA--TTAAC--AGAGACACCTAACACCTC--ATTTCAACACAAAGTC-CG-----TTAAGTTAA-GC--AT-GAGG-TTATTCAT----C-----TCACAAAAATACATGCGAGGAT-CAT-AGTATATCAAT-AAGGGCGC-TATTCAACATA--TTTTTTCAAATATACATGTATAATCC------CCCCCCCCAC--CTGTAAAACTTGTTAAAATTTAAGGATTTCCTTTGTAAT-AAAGACTTAAAAAC-AAGCGCATATTGTGCCT--GTGCT--ACTTCTGATATTTAAATACTTTGTAA-AATATGAATTAAAATTCTGATAAAATATGATGCAAAGGTGT-TAGATGGGCTGGTTTGTTAAGTGAGT-TA-TTAAACA-CCCTGTAGCTCATTACTTAAATTCTACTGTCACCAGTAACATTTTTTGCGTA-TTA--TCATCTGATA--------TACGAACTACC-----GTTTGAGTCAACAAGGATAGTCTC-----ATTT-TGTGAAAACAGAGTTATCGAGACCAAATTATGGGACCAAA-AATAGTTGGA
gi|11 : aTATCCAA-CTATTG-CGG--CCATCACG--TGA-TTTG-ATGAATTA-TT----TGTTTACCTATTA-AGA--GTACT-T-GT-AT-TTACTA---TAGG-C-GA-T-AAC-GAGGA-G-T--------G-TG---A---TG-AAA-CTAT----TT-TA-ACT-TTT-TTCA-TCCA-TGAT-AT-TAA-AT---A----T---AG-T--GGACCCCTGAC--TTG-AAA-GAGC--AT--TAC--TAT---CTACA-AAA-----GA-TGATAT---A-T-T--TTA--TTTC--AATTCG----GAAA---T--ATGATT-TATTGCTTCAAAA-T------TCA----------TTTTAAAA-AG-AG-TG--TA-TA-CG--TCC--AAT-G-ATTAACGTG---T---at
gi|9 : TATCCAC-CT-TAT-GTG--CCATCACG---GA-TTTG-ATCAATTAATTGGTGTGTTGACCTATTA-AG---GTACC-T-GTATTATTACTA---TAGG-CCA--TCAACGGCGGA-G-T--------G-TGTGCA---TTGAAA-ACATATTCTC-TA-ACG-TTT-TTCA-TGCATT--T-AA-TAG-AAT--A----AGGGAGTTA-GGCCCCCTGATAGCTG--AC-GAGTCGATTCTAA--T-T---TCATA-AAACATGGAA-TGATAT---A-T-TTCTTA--TTTA--GG---G----AAAATTGA--A--TTT-TATTGCTATGTAAAT------TCT----------CTTGAAAACATCAGTTGTGTATTACTG--T-TC-AATCG-ATAAACGTG---T---AA-------GAATAAT--GAGCAA-TGATTGGT-GAATCTGTTTTCGG-A--TTTG-CGGTCTTCTGTCAT-AAAA--A-CA-TGTTTGCACTG-TTT-TAT---TG-T--TTTT--TTGG--AA--AAGTT--------C-A-TCTAG----TGT---AA-----AGTCTTAAATAG-ATT-A
gi|4 : ccaATCCAAACTATTG-CAAATCCATCACAATTGATCTTAGATCAATTA-TT----TGTC--CCTATAAGAGA--GTACC-T-GTT-T-TTACTA---TAG--C-GA-T-AACTGG--A-G-T--------GACGTG-A---TT-AAA-CTAT----TA-TA-ACT-ATT-T---------------------AAT--A----A---AGTT--GGACCCCTGAC--CTG-AAA-GAGC--AT--TAA--T-TT--CTACA-AAA-----GA-TGATAG---A-T-T--GTA--TTTC--AGTTCG----GAAA---A--ATGATT-TATTTC--------T------TCAAAATTCA---TTTGAAAA-AT-AG-T-TGTA-TA-CG--T-CC-AAT-G-ATTAACATA---TGTAAA-------T--TAAC--GAGC-A-T--GTGGT-GAA----TTTTCGGCA-TTTTG-CG------TGT-ATAAAAA-CG-TA-TTTTTGAACCT-TTT-T-T---CA-T--ATTC--CTGGAAAA--ATGTTG----AA-C-A-TCTAG----TGT--AAA-----AG---TAAA-AC-ACT-AAAC---TAT--ATGAAAC---A-T-GAAAAACA---T--T------CAG-T----TCAGAT----CCT-A-CT--T-TT---ATTGCTTCAAAA-TCGTCTTGAAAAT-TAC--GAATTTT--TA-----------C--------CAATAT-TGAAACATTTCGG-CAAA-------------AT-----------GGCGGAT-GCAAG-AGGGAGTAAACAA-----------AGC---GT------CATGTG--GTAT-TTGCGTTCTTTTAAAA-TCTGT----TT-GTGTTAT-GAATA-AA----GACAAGAAGAGA----AAATCATT-GCTTACCC-ATGAAGTT-C--AGAAATGT-CCTTTCCTTGACTGACCACA-AATA-C--A-ACTGCT---TGCAAATGACTTTTGGG-CA---AACC--ATTGAAAA-TCTTAGAAGCCA-TTGTATTTTACT-TGTACAAA------CATTTTA---GTT-TATAT-CTACTCAA-TATA--TCATTTGA-TGTGT-TGTTGG-----AAGAATTTGT-GTAGTTTTAG-CTATATCCGATAATTGGTTT-GAATAAGA-----TC-TA---GACCCA-TTTCATAATTAG-GAGCA-TGCAT--------AT-G--TAATAAGAA--ATTG---GC-AGGGAAAAA--CAAAGAATTTAAC--AGTGACACCTAACATCT-CAGTTATAACA-AAAGCCACG-----TTCAGTTAA-GC--ATGAAAGTGTATTCAT----CATC-ATCAC-AAAAT-CAT--GAGGAT-AATAAATATATCAATAA---TCGCATATTCAACATA--TTTTTTCA-----ACATA--TAATCCCATCCTC--------C--CTA----------TAAGATTTAAG---TTTCATCGTA---Aca
gi|7 : TAG-CGG--TCATCACG--TGA-CTTC-AGCGATTA-TT----TGTTTACCTATCA-AGA--GTACC-T-GT-AT-TTACTA---TAGG-C-GA-T-AAC-GGGGA-G-T--------G-TGTA-A---TT-AAA-CCAT----TA-TA-ACT-TTT-TTCA-TATA-T--T-ATATAGAAA---A----A---AGTT--GGACCCCTGAC--CCG-AAA-GAGC--AT--TAAT-T-T---CTACA-AAA-----GA-TAATAT---A-T-T--TTA--TTTC--AGTTCGGAAAAAAA---A--G--ATT-TATTGCTTCAAAA-T------TCA----------TTTGAAAA-AT-AG-TGTTTA-TA-CG--TCT--AAT-T-TTTAGTGTG---TA--AA-------T--AAAC--AAAC-ATT--TTGGT-GAA----TTTTCGGCATTTTTG-CG------TGTAAT-AAAA-CG-TATTTTTTCAACCTATTT-T-T---CA-TACATAT--CTGGAAAA--AAGTTG----GA-C-A-TCTAG----TGT--AAA-----AG--TTAAA-AC-ACT-AAAC---TAT--ATGAAAC---A-T-GAAAATCA---T--T------CAG-T----TCAGAAC---C---A-ACT-T-TT---ATTGCTTCAAAA-TCGTCTTGAAAAT-TAA--GAATTTT--CA-----------CAGATATTGAAACAT-T-------------CAAA-------------AT-----------GGCGGAC-GCAACAAGGGAGTAAACAAA----GCGATTAGC---GTCATTACCATGTG--A-AAGTTGCGTTATTTT-AAA-taaagac
gi|10 : CGTCACG--GGA-CTTA-A-CTATTA-TT----TGTA-ACCTAGTG--GACTGTTTCAT-ACAGT-TTATTACAATAGG-C-G-----A-GGGGAA-G-TTGGGATATG-TGT--AATTTT-AAA-CTATAC--GA-TA-ACT-TTTCTTCA-TACG-T--T----TAG----------------------GACGCCT---------AAATGA----AT--TAT--T-T---CGACA-AAA-----CA---GTA----G-T-T--TCC--TTGC----TTCA----AAA----------------------------T------TCA----------TTTGAAAA-GT-AG-TGTATT-TT-CG--TGT--AAT-A-ATCTACGTA---C---AAATTACATT--TAAC--GAGC-A-T--GTGGT-GAT----GTTTGGGGA-TAGAG-CA------TGC-ATAAAAA-CG-GA-ATTTTCAACTT-TTTAT-T---CA-T--ACTT--CTGGAA-------TTGTTTAGA-C-A-TATAG----AG----------------TAAA-AC-AGC-ACAC---TAT--ATCAAAC---ATT-AAAAA--A---A--T------CAA-T----CCATGC----C---T-ACT-T-TT---CTTACTTCAAatct
gi|3 : -TT----TGTTCTCCTATTA-AGA--GTACC-T-GTA-T-TTACTA---TAGG-C-GA-T-AACGGGGAATG-T--------G-TG---A---TT-AAA-CTAT----TA-TA-ACT-TTT-TTCA-TGCA-T--T-ATATAC-AAT--A----A---AGTT--GGACCCCTGAC--CTG-AAA-GAAC--AT--TAAATT-T---CTACA-AAA-----GA-TGATAT-------T--TTAAGTTTC--AGTTCG----GAGA---ATGA--ATT-TATTGC--------TCAAAATTTA----------TTTGAAAA-TA-AG-TGTGTA-TA-GG--T-TTCAAT-G-ATTATCGTG---T---AAA------T--TAAC--GAAC-A-T--ACGGT-GAA----TTTTCGGCA-TTTTG-AG------TGT-AT-AAAAACG-TA-TTTT-CAACCT-TTT-T-T---CA-T--ATTT--CTGGAAAA--AAGTTG----GA-C-A-TCTAG----TGT--AAA------G--TTAAA-AC-ACC-AAAC---TATT-ATGAAAC---A-T-GAAAA--ACA-T--T------CAG-T----TGAGAA----CCTAA-AC--T-TTTT-ATTGCTTCAAAA-TCGTCTTGAAAAT-TAA--GAATTTT--CA-----------C--------CGATAT-TGAAAAATTTAATTCAAA-------------AT-----------G-CGGACAGCAAC-CGG-AGTAAACAAA----G-----------GT------CATGTG--A-AAGTTGTGTTATTTA-AAA-TCTGTTTAATTTGTGTTAT-GAATA-AAGAC----AAGAAGAGA----AAATTATT-GCTTA-CCCATGAAGTT-C--AGAAATATTCCTTTCCTTGACTGACCACA-AATA-C--AAG-TGCT---TGCAAATGACTTTTGAG-AA----A-C--ATTGAAAAT-CTTAGAAGC-ACTTGTCTTTTACT-TGTACAAA-------A----AA-GGTT-AT-AT-CTACTCAA-TACA--ATATTTGATGTTGT-TGTTCG-----AAGAATTTGTG-TTGTTTTAG-C--TATCCGATAATTGG-TT----T-CAATAAGTTC-TAGA-GACTTA-TTTCATAATTAG-GAGCA-TGCA-T--T-TACAAGG--TAATAAGAA--ATT----GC-A-GGGAAAAATCACAGAATTTAATCAAGAGACACCTAACACCT-CAATCTCAACA-AAAGCCA----AACTTAAGTTAA-GC--ATGGAGG-TTATTCA----GCATCGATCAC-AAAA--CA----AGGAT-CATAAGTATAT-AAT-A---TCGCATATTCAACA------TTTTCA-----ATATA--T-GTCC------C--------C--CTG----------TAA-ATTTAAG--TTTCAATCGTAAT-AAAGACA--AAAACAA-----ATATTGT---CTGGTGCTTACTGTCTGT--TTT-AATACTTTGTAATCATATGAATTAAAA-TCTGATAAAAA-TTAAATCAAGTGGTAGACATGGG--G-TT--TTGTG---GTAAA-TT-AACAGCCCTGTAACTCAT
gi|5 : atT-TTACTA---TAGGTC-GACT-AACCGGGGA---T--------G-TTG--A---TT-AAC-CAAT----TA-TA-ACTAGTT-TTCA--GCA-T--TTATATAG-AATACA----A---TGTT--GGACCCA-GAC--AAG-AAA-GAGC--AT---AA--T-TTATCTACA-AAA-----GAATGATATT--A-TCT--TTA--TTTTCGAGTCCG----GAGA---A--T--ATTACATTGC--------T------TCAAAATCTCATCTATGAATA-AG-AG-TGT--G-TA-AG--T-TC-AAT-GTATTATCGTGATAT---AT-------T--TAACACGAAC-A-T--ACGGT-GAA----TTT-CGGCA-GTTTGGTAG-----TTT-AT-AAAAACT-TA-TTTATCATCAC-TTT-T-T---CA-T--AT-T--CTGGAAAATTAAGTTG----GAAC-AATCTAT-----GT--AAA------G--TTAAA-ACTATCCAAAC---TAT--ATAATACTGAA-C-AAAAC--A---T--T------CAG-TACATTAAGAA----C---T--C--T-TTTTGATTGCT-CAAAA-TCTCCTTGAAAATCTAATTGAATTTCACCATATTGAATAAAC-------ATGATTTAT-------------CAAATATGAGCGAATGTAT-----------GGCGGAC-GCAAC-CGGGAGTAAACAAA----ACG----------T------CATGTGTGA-AAGTTGTGTTATTTT-AAAATCTGTTTAATT-GTGTTAT-GAATA-AAGAC----AAGAAGAGA----AAATCATT-GCTTA-CCCATGAAGTT-C--AGAAATAA-CCTCTCCTTGACGGACCACA-AATA-CA-A-G-TGCT---TGCAAATGACTTTTGGG-CAAACCAT---ATTGAAAA-TCTTAGAAGCCA-TTGTCTTTTACT-TGTACAAAT-----CA----A
gi|18 : atatcccacactttatttgcggccatcagttcgtgatattatcaaataaatggaacctGG-C-GA-T-AACGGGG-A-G-T--------G-TGTA-A---TT-AAA-CTAT----tttnnnnnnnnnnnnnnnnnnnnnnnnncaaacaaggtttatctactcaataattcaattgatgtgttgggggaaagaatttgtagagt
gi|14 : tatgtatcacgaaatctgactatttgaatcgt-T-T--TTA--TTTC--AGTTAG----GAGA---A--ATGATT-TATTGC--------T------TCA----------
gi|15 : --------T------TCA----------TTTGAAAA-GC-AG-TGATTA-CA-CG--T-GA-AAT-G-ATCAGAGTA---TA--AA-------T--TAAC--AAGC-A-T--GCGGT-G-A----TTTTaaattccnnnnnnnnnnnnnnnnnnnnnnnnnaatccactaggcgtaaat
gi|8 : ttttttgcttcaaaaG-CA------TGT-AT-AAAAATG-TA-ATTTTCAACCT-TTT-T-A---CA-T--ATTT--CTAGAAAA--CTTTTG----GA-C-A-TCTAGTATAAGTGTAAA-----AG--TTAAA-AC-ACT-AAAC---TAT--ATGAAAC---A-T-GAAAA--AGTAT--T------CAG-T----TCAGAA----CCT-A-CT--T-TT---CTTGCTTCAAAA-TT------AAAA--------AATTTT--CA-----------C--------CGATAT-TGAAACTTATTT--CAAA-------------GT-----------GGTGGAT-GCAAG-CGGGAGTAAACAAGCATTGCATTTAATTTTGT-------ATATG--T-ATGTAGTGCTATTTT-AAAATCTGTTT-----GTGTTAT-GAATA-AAGAC----AAGAAGAGA----AAATCATT-GCTTA-CCCATGAAGTT-C--AGAAATAT-CCTTCCCTTGACTGACCACA-AATA-CA-A-G-TGCT---TGTGAATGGCTTTTAGG-CA---AATC--ATTGAAAA-GCTTAGAAGCCA-TTGTCTTTTACT-TGTACAAA------CA----AA-GGT-----------------TATA--TCAC---A-GTTGT-TG---G-----AAGAATTGGT-GTTGTGTTAG-C--TAatt
gi|11 : tatg------TGTGAT-GAAA-C--TA-TTTT--AACTT-TTT-T-CATCCA-T--G-AT--ATTAAATA--TAGT-G----GA-C-C-CCTGA----CTT--GAA-----AG------A-GC-ATT-A--C---TATCTACAAAAG---A-T-GATAT--A---T--TTTATTTCAA-T----TCGGAA----A---T-ATGAT-TT---ATTGCTTCAAAATTCATTTTAAAAAattgg
gi|12 : tatccaactattgcggccatcacgtgatttgatgaattatttgtttacctattaagagtacttgtatttactataggcgataacgaggagTT-T-T---CACT--GTATTTCTGAAAAT--CTTTTG----GA-C-A-T--GA----AAT--ATATATATAG--T--AC-AC-GT----AC---TGC--ATGAAAC---A-T-AACAA--A---TAAT------CAA-T----CCAGGG----C---CTAC--T-TT----TTTCTTCAAAA-TCATCTTgagtgtatacgtccaatgattaacgtgt
gi|20 : A-T--GTAT--CTGGAAAA--AAGTTG----GA-C-A-TCTAG----
gi|16 : ATGACTTTTGGGCAATATAGTC--ATTG-AAATTCTTAGACGCCACT-GTCTTTTATC-TGTACAAA------CA----AA-GGTT-AT-AT-CTACTCAA-tg
gi|6 : AACC--ATTGAAAAT-CTTAGAAGCCATT-GTTCTTTACT-TGTACAAA------CA----AA-GGTA-TATAT-CTACTCAA-TATA--TCATTTGA-TGTGT-TGTT-GG----AAGAATTTGTG-TTGCTTTAG-C--TATCTGATAATAGG-TTTGAAT------------------A---A-TTTCATAATTAG-GAGCAT-GCATT--CGTAC------TAA---GAAT--TTGTCAGCTA-GGGAAAA--CACGGAATTTAAC--AGTGACACCTAA------------CACCC-AGACCGACGTTAA-----GTTAATGCCAATGGAAAGTTATTCATCATGCAT---TCAC-AAAAT-CAT--GAGGATTCATAAGTGTA-CAAT-AA--TCACATATTCAACATATGTTTTTGCAG----ACATA--TGATTC------C--------CGCCTG----------TAAGATTTAAG--TTT-CATCGCATTCAAGA-C---AAAAA-ATAAA-ATATTGTGC-T--GTTTT--TCTTCTG---TTTTAATACTTTGTAATCATATGAATTAAAA-TCTGATAAAAT-T-AAATCAAGGTGT-GA-ATGGG--GGTT--TTATG---GTAAA-TT-AACATCCCTGTAACTCATTACTT---CCCTATT
gi|5 : ----AA-GGTT-T--AT-CTACTCAA-TAAT--TCAATTG-----ATGTGTT-GGGGGAAAGAATTTGTAGaaatcaaggtgtgaatggggtttttaaggtaaattaacatccctgtaattcattatttccctactgtcaccaaaatatctcgcgtatttaattcatctgatacgaactacctttagtcaacaaggatagtctcatttaattgtcaaaacagagttatagaaccgaattatgaccgaagtagttggata
gi|6 : atatcccacactttatttgcggccatcagttcgtgatattatcaaataaatggaaccttttactataggtcgactaaccggggatgttgattaaccaattataactagttttcagcatttatatagaatacaatgttggacccagacaagaaagagcataatttatctacaaaagaatgatattatctttattttcgagtccggagaatattacattgcttcaaaatctcatctatgaataagagtgtgtaagttcaatgtattatcgtgatatatttaacacgaacatacggtgaatttcggcagtttggtagtttataaaaacttatttatcatcactttttcatattctggaaaattaagttggaacaatctatgtaaagttaaaactatccaaactatataatactgaacaaaacattcagtacattaagaactctttttgattgctcaaaatctccttgaaaatctaattgaatttcaccatattgaataaacatgatttatcaaatatgagcgaatgtatggcggacgcaaccgggagtaaacaaaacgtcatgtgtgaaagttgtgttattttaaaatctgtttaattgtgttatgaataaagacaagaagagaaaatcattgcttacccatgaagttcagaaataacctctccttgacggaccacaaatacaagtgcttgcaaatgacttttgggcaaaccatattgaaaatcttagaagccattgtcttttacttgtacaaatcaatttnnnnnnnnnnnnnnnnnnnnnnnnncaaacAT-TAAA-TCAAGGTGT-GA-ATGGG--GTTT--TTAAG---GT-AAATT-AACATCCCTGTAATTCATTATTT---CCCTACTGTCACC---AAAATATCTCGCGTATTTAATTCATCTG--A--------TACGAACTA-CCTTTAGTCAACAAGG------ATAGTCTCATTTAA--T-TGTCAAAACAGAGTTATAG-AACCGAATTAT--GACC-GA-AGTAGTTGGATAagt
gi|13 : aaccattgaaaatcttagaagccattgttctttacttgtacaaacaaaggtatatatctactcaatatatcatttgatgtgttgttggaagaatttgtgttgctttagctatctgataataggtttgaataatttcataattaggagcatgcattcgtactaagaatttgtcagctagggaaaacacggaatttaacagtgacacctaacacccagaccgacgttaagttaatgccaatggaaagttattcatcatgcattcacaaaatcatgaggattcataagtgtacaataatcacatattcaacatatgtttttgcagacatatgattcccgcctgtaagatttaagtttcatcgcattcaagacaaaaaataaaatattgtgctgtttttcttctgttttaatactttgtaatcatatgaattaaaatctgataaaattaaatcaaggtgtgaatgggggttttatggtaaattaacatccctgtaactcattacttccctAAATATCTCGCGTATTTAATTCAACTG--G--------T--GAACTA-CCGTTAGTCAACAAGG------ATAGTCTC-----A--T-TGTCAAAACAGAGTTATCG-AACCTAATTAT--GACC-GA-AATAGTTGGAT
gi|17 : TATCTCGCGTATTTAATTCATCTG--ATACGAAGTTACGAACTACC-----GT--------------ATAGTCTC-----A--T-TGTCAAA
gi|19 : TCTT-----A--TATTTGAAAACAGAGTTATCG-GACCAAATTAT--GACC-AA-AATAGTTGGATA
gi|1 : acAT--GACC-GACAATAGTTGGATA
Alignments
lowQualScore : 1111 111111 1111111111111 11 1111111 11111 11 11 111 11111 5555555555555555555555 111111 1111 111111111 11 111111 11 33333333333 1111 777777777777777777777777777777 3333333333333 666666666666666666666666666666 111 1 1 22222 111 2222222 11 11 1 111111 111111 111 1111 22 1 1 222222222222 22222222222222 11 111 11 11 44444444 11 22222222222 111 1111 1111 2222222222 5555555555555555555555555555555 11 222 11 44444 2222 1 1 222 2 1 1 11 11 1111 111 3333 11 3333333 1111 11111111 11
lowQualScore : 6 4444 5 5 77 888 777 77 55 3 4 9999 999 4 777777 4 4 66 4 4 4 7777777777777 4 4 4 11 4 4 55 4 66 4 4 4 4 0000000 77777 4 00 66 4 66 888 00 4 222 4 11111 4 4 4 55 4 55 55 55 55 0 66 55 4 7777777777777777777777 4444 4 8 55 8 11 4 4 1 55 4 4 66 777777 4 4 1111 9999 55 666666666 4 4 22 4 4 666 55 55 0 7777 7 3 000000 777 1 4 4 4 777 4 777 4 4 88 777 66 4 9999 66 4 55555555555 4 4444 1 5 77 5 777777777777777777777777777777 1111111111111 5 777 777777777777777777777777777777 000 77 1 7 1 888 6 6 88888 6 6 6 6 99 6 3 6 6 6 111 5 7777777 33 88 2 7 5 5 999999 9999 5 888888 5 5 77 3 333 1 5555 11 6 99 0 6 6 444444444444 1 8 8 66666666666666 0 11 444 8 8 11 0 11 1 9999 1 8 0 33333333 8 11 8 8 8 55555555555 8 88 111 8 3 0 2222 0 0000 8 4444444444 3 2222222222222222222222222222222 3 11 88 6 0 222 33 44444 3333 0 1 0 777 0 3 3 0 8 8 8 6 11 11 1 3 7777 5 777 5555 0 0 11 0 8 6666666 55 6666 66666666 6 8 6 11 8
lowQualScore : . .... . . .. ... ... .. .. . . .... ... . ...... . . .. . . . ............. . . . .. . . .. . .. . . . . ....... ..... . .. .. . .. ... .. . ... . ..... . . . .. . .. .. .. .. . .. .. . ...................... .... . . .. . .. . . . .. . . .. ...... . . .... .... .. ......... . . .. . . ... .. .. . .... . . ...... ... . . . . ... . ... . . .. ... .. . .... .. . ........... . .... . . .. . .............................. ............. . ... .............................. ... .. . . . ... . . ..... . . . . .. . . . . . ... . ....... .. .. . . . . ...... .... . ...... . . .. . ... . .... .. . .. . . . ............ . . . .............. . .. ... . . .. . .. . .... . . . ........ . .. . . . ........... . .. ... . . . .... . .... . .......... . ............................... . .. .. . . ... .. ..... .... . . . ... . . . . . . . . .. .. . . .... . ... .... . . .. . . ....... .. .... ........ . . . .. .
lowQualScore : 7 2222 7 7 99 888 000 22 22 1 4 4444 666 4 222222 4 4 11 0 0 0 6666666666666 0 0 0 00 0 0 55 4 11 4 4 4 4 3333333 77777 4 66 11 4 11 000 66 4 222 4 11111 4 4 4 55 0 55 55 55 55 5 55 55 0 2222222222222222222222 5555 0 0 66 0 00 0 0 4 55 0 4 11 222222 4 4 6666 4444 11 000000000 4 4 11 4 0 444 00 00 3 7777 3 6 555555 000 9 4 4 4 888 4 888 4 4 33 888 11 4 4444 11 4 99999999999 4 0000 4 7 99 7 444444444444444444444444444444 4444444444444 7 111 999999999999999999999999999999 000 99 4 1 4 888 7 7 33333 7 7 7 7 22 7 2 7 7 7 777 7 2222222 88 66 5 0 0 0 444444 4444 0 444444 0 0 99 9 666 4 0000 66 7 22 8 0 0 888888888888 8 0 0 44444444444444 8 00 000 0 0 00 8 00 0 4444 0 0 8 66666666 0 00 0 0 0 00000000000 0 88 888 0 8 8 6666 8 2222 0 6666666666 8 2222222222222222222222222222222 2 00 22 0 8 000 88 88888 2222 0 0 0 555 0 2 2 0 0 8 0 0 00 00 0 8 0000 6 555 7777 8 8 00 8 0 0000000 88 4444 88888888 7 0 4 00 0
consensus : TATCCAA-C----TATT-G-CGG--CCATCA---CG--TGA-CTT-GATCGATTA-TT----TGTTNACCTATTA-AGAGTACCT------GTA-T-T--TACTATAGG-CGA-T-AACGGGGGAG-T--------G-TGTG-A-TT--AAA-C-TAT--TA-T--A-ACT-TTT-TTCA-TGCATT-ATATAGAATA-A---A-GTT--GGACCCCTGAC--CTG-AAAGAGC--AT--TAA--T-T---CTACA-AAA-----GA-TGA-TAT-A--T-T--TTA--TTTC--AGTTCGG--AGAAATG-A--TT-TATTGC--------TTCA----------TTTGAAAA-AT-AG-TGTGTA-TAC-G-TTCAAT-G-ATTAGCGT--G-TAA-ATT--A------ACGAGC-A-T--N-CGGTGAA----TTTTCGGCA-TTTTGC--G------TGT-ATAAAAAC-GTA-TTTTTCAACCT-TTT-TTCA---T--ATTTCTGGAAAA--AAGTTG----GA-CA-TCTAGT------GTAAA---AGTTAAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAA--A---T--TCAG-T----TC--AGA-AC---C-A--C--T-TT---ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCAC-CGATATTGA-------A--------A-------TT----CAAA-------------ATGGCGGAC-GCAAC-CGGGAGTAAACAAAGCG---A--GCGT------C---------ATG---TG--AAAGTTGCGTTATTTTAAAA-TCTGTTTAA-TTGTGTTAT-GAATA-AAGAC-GACAAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATA-TCCTTTCCTTGACTGACCACA-AATA-C-AAGTGCT---TGCAAATGACTTTTGG-GCA-A---AACC--ATTGAAAATTCTTAGAAGCCACTT-GTCTTTTACT-TGTACAAA------CA----AA-GGTT-TA-AT-CTACTCAA-TATA--TCATTTGA-NTTGTTGTT-G--AAGAATTTGT-GTTGTTTTAG-C--TATCCGATAATTGGTTT-GAATAAGATC-TAGAGGACCTA-TTTCATAATTAGGAGCA-TGCATT--TTACAA-G--TAATAAGAA--ATTG---GC-AGGG-AAAA--CACAGAATTTAAC--AGTGACACCTAACACCT-CAATTTCAACA-AAAGCC-ACG--A-TTAAGTTAA-GC--ATGGAG-G-T-TATTCAT---GCATC-ATCAC-AAAAT-CAT--GAGGAT-CATAAGTATATCAATAA--TCGCATATTCAACATAT-TTTTT-CA-ACA------TATAATCC------C--------C--CTG----------TAAGATTTAAG--TTTCCATCGTAATAAAGAC---AAAA--CAAA---ATATTGTGCC-GTGC-TNCT-TCTG---TTT-AATACTTTGTAATCATATGAATTAAAA-TCTGATAAAAT-TNAAATCAAGGTGT-GA-ATGGG--GGTT--TTAAGGTAAATT----AACATCCCTGTAACTCATTACTT---CCCTACTGTCACC---AAAATATCTCGCGTATTTAATTCATCTG--ATACGAA-CTACCGTT--AGTCAACAA--GGATAGTCTC-----A--T-TGTCAAAACAGAGTTATCG-GACCNAATTAT--GACC-GAAATAGTTGGATA
Reference ( family-1174 ) : TATCCAA-C----TATT-G-CGG--CCATCA---CG--TGA-CTT-GATCAATTA-TT----TGTTNACCTATTA-AGAGTACCT------GTA-T-T--TACTATAGG-CGA-T-AACGGGGGAG-T--------G-TGTG-A-TT--AAA-C-TAT--TA-T--A-ACT-TTT-TTCA-TGCATT-ATATAGAATA-A---A-GTT--GGACCCCTGAC--CTG-AAAGAGC--AT--TAA--T-T---CTACA-AAA-----GA-TGA-TAT-A--T-T--TTA--TTTC--AGTTCGG--AGAAATG-A--TT-TATTGC--------TTCA----------TTTGAAAA-AT-AG-TGTGTA-TAC-G-TTCAAT-G-ATTAGCGT--G-TAA-ATT--A------ACGAGC-A-T--N-CGGTGAA----TTTTCGGCA-TTTTGC--G------TGT-ATAAAAAC-GTA-TTTTTCAACCT-TTT-TTCA---T--ATTTCTGGAAAA--AAGTTG----GA-CA-TCTAGT------GTAAA---AGTTAAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAA--A---T--TCAG-T----TC--AGA-AC---N-A--C--T-TT---ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCAC-CGATATTGA-------A--------A-------TT----CAAA-------------ATGGCGGAC-GCAAC-CGGGAGTAAACAAAGCG---A--GCGT------C---------ATG---TG--AAAGTTGCGTTATTTT-AAA-TCTGTTTAA-TTGTGTTAT-GAATA-AAGAC-GACAAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATA-TCCTTTCCTTGACTGACCACA-AATA-C-AAGTGCT---TGCAAATGACTTTTGG-GNA-A---AACC--ATTGAAAATTCTTAGAAGCCACTT-GTCTTTTACT-TGTACAAA------CA----AA-GGTT-TA-AT-CTACTCAA-TATA--TCATTTGA-NTTGTTGTT-G--AAGAATTTGTGGTTGTTTTAG-C--TATCCGATAATTGG-TT-GAAT-AGATC-TAGA-GACTTA-TTTCATAATTAGGAGCA-TGCATT--TTACAA-G--TAATAAGAA--ATTG---GC-AGGG-AAAA--CACAGAATTTAAC--AGNGACACCTAACACCT-CAATTTCAACA-AAAGCC-ACG--AATTAAGTTAA-GC--ATGGAG-G-T-TATTCAT---GCATC-ATCAC-AAAAT-CAT--GAGGAT-CATAAGTATATCAATAA--TCGCATATTCAACATAT-TTTTT-CAGACA------TATAATCC------C--------C--CTG----------TAAGATTTAAG--TTTCCATCGTAATAAAGAC---AAAA--CAGG---ATATTGTGCC-GTGC-TNCT-TCTG---TTT-AATACTTTGTAATCATATGAATTAAAA-TCTGATAAAAT-TNAAATCAAGGTGT-GA-ATGGG--GGTT--TTANGGTAAATT----AACATCCCTGTAACTCATTACTT---CCCTACTGTCACCAGTAAAATATCTCGCGTATTTAATTCATCTG--ATACGAA-CTACCCTT--AGTCAACGA--GGATAGTCTC-----A--T-TGTCAAAACAGAGTTATCG-GACCGAATTAT--GACC-GAAATAGTTGGATA
gi|1 : TATCCAA-C----TATT-GTCGG--TCATCA---CG--TGA--TT-GATCAATCA-TT-----GTTACCCTATTA-A-AGTACCTT-----GTA-T-T--TACTATAG--C-A-T-AAACGGGGAGCT--------G-CGTG-AATT--AAAAC-TAT--TAAT--AGACT-TTT-TTCAATGCATT-ATACA-AATA-ATA-A-GTTTAGGACCCCTGAC--CTGGAAAAAGC--AT---AA--T-T---CTACAGAAA-----GA-TGAATCT-GACT-T--TTA--TTCA--GGTTAGG--AGACATG-A--TT-TATTGC--------TTCAAAATTCGC--TTTGAAAA-AT-AG-TGTGTAGTAG-GATTCAAT-G--CTAGCGT--G-TAA-ATT--A------ACGAGC-A-T--TTCGTTGAA----TTTTCGGCA-TTTTGG--A------TGT-ATAAAAACGGTA-TTTTTCAACC--TGT-TTCA---T--ATTTCTGGGAAA--AAG-AG----GACCA-TCTAGT------GTAAA---AGTTAAAAC-A-C-TAAATAGATA-TATGAAAC---A-TAGAAAA--A---T--TCAGCT----TCAGAGA-ACG--C-AT-C--TATT---ATTGCTTCAAAATCGTCTTGAAAAT-TAA--TAATTTTTAC-CGATATTGG-------A--------AAATGATCTT----CTAA-------------A-GGCGGAC-GCAAC-C-GGAGTAAACAA-------A--ACGT------C---------ATGATATG--ACAGTTGTGTTATTTTAAAA-TCTG-TTAA-TTGTGTTATGGAATA-GAAA--GACAAGAAGAGTACAAATCATTCGCTTACC--TAAGGTTGCGAAGAAATA-ACCTCTCCTTGAC-GACCACAGAATAGCAAAGTGCTAAATGCAA--GAC--TTGGCGCT-A---AACCAAATTGAAAATGGCTAGAAG-CGCTTCGTTTTATACTATGATCAAATCAATTTA----AATGGTTATA-ATCCTACTCAAGTACAAGTCA-TTGA--TTGTTGTT-G--GAAAA--TGT--TTGTTTTAGCC--TATTCGAT-ATTCG-TTGGAAA-AGATCTTAGAGGACTTATTTTCATAATATGGAGCA-TGCATCGATTACAA-GATCAATAAGAA--ATTG---GC-AGGG-AAAA--CACAAA--TTAAC--AGAGACACCTAACACCT-C-ATTTCAACACAAAGTC--CG----TTAAGTTAA-GC--AT-GAG-G-T-TATTCAT----C-----TCACAAAAATACATGCGAGGAT-CAT-AGTATATCAATAAGGGCGC-TATTCAACATAT-TTTTT-CAAATATACATGTATAATCC------CCCCCCCCAC--CTGTAAAACTTGTTAAAATTTAAGGATTTCCTTTGTAATAAAGACTTAAAAA--CAAGCGCATATTGTGCCTGTGC-TACT-TCTGATATTTAAATACTTTGTAA-AATATGAATTAAAATTCTGATAAAATATGATGCAAAGGTGT-TAGATGGGCTGGTTTGTTAA-GTGAGTTATTAAACA-CCCTGTAGCTCATTACTTAAATTCTACTGTCACCAGTAACATTTTTTGCGTA-TTA--TCATCTGATATACGAA-CTACCGTTTGAGTCAACAA--GGATAGTCTC-----ATTT-TGTGAAAACAGAGTTATCGAGACCAAATTATGGGACCAAAAATAGTTGGA
gi|10 : aCGTCA---CG--GGA-CTT-AA-CTATTA-TT----TGT-AACCTAGTG--GACTGTTTCATACAGTT-TAT--TACAATAGG-CGA------GGGGAAG-TTGGGATATG-TGTA-A-TTTTAAA-C-TATACGA-T--A-ACT-TTTCTTCA-TACGTT---------TA------------GGAC-----GC--CTA-AATGA----AT--TAT--T-T---CGACA-AAA-----CA---G-TA--G--T-T--TCC--TTGC----TTCA-----AAAT-----------------------TCA----------TTTGAAAA-GT-AG-TGTATT-TTC-G-TGTAAT-A-ATCTACGT--A-CAA-ATT--ACATTTAACGAGC-A-T--G-TGGTGAT----GTTTGGGGA-TAGAGC--A------TGC-ATAAAAAC-GGA-ATTTTCAACTT-TTTATTCA---T--ACTTCTGGAA-------TTGTTTAGA-CA-TATAG---------------AG-TAAAAC-A-G-CACAC---TA-TATCAAAC---ATT-AAAAA--A---A--TCAA-T----CC--ATG-CC---T-A--CT-T-TT---CTTACTTCAAat
gi|11 : TATCCAA-C----TATT-G-CGG--CCATCA---CG--TGA-TTT-GATGAATTA-TT----TGTTTACCTATTA-AGAGTACTT------GTA-T-T--TACTATAGG-CGA-T-AACGAGGA------------G-TGTG-A-TG--AAA-C-TAT--TT-T--A-ACT-TTT-TTCA-TCCATG-ATATTAAATA-T---A-G-T--GGACCCCTGAC--TTG-AAAGAGC--AT--TAC--TAT---CTACA-AAA-----GA-TGA-TAT-A--T-T--TTA--TTTC--AATTCGG--AAATATG-A--TT-TATTGCTTCAAAA-TTCA----------TTTTAAAA-AG-A---GTGTA-TAC-G-TCCAAT-G-ATTAACGT--G-T
gi|12 : TT-TTCACTGT--ATTTCTGAAAAT--CTTTTG----GA-CA-TGAAAT------ATATATATAGT----AC-A-CGTA--C---TG-CATGAAAC---A-T-AACAA--A---TAATCAA-T----CC--AGG-GC---CTA--C--T-TT----TTTCTTCAAAATCATCTT
gi|13 : AAATATCTCGCGTATTTAATTCAACTG--GT--GAA-CTACCGTT--AGTCAACAA--GGATAGTCTC-----A--T-TGTCAAAACAGAGTTATCG-AACCTAATTAT--GACC-GAAATAGTTGGAT
gi|14 : --T-T--TTA--TTTC--AGTTAGG--AGAAATG-A--TT-TATTGC--------TTCA----------
gi|15 : --------TTCA----------TTTGAAAA-GC-AG-TGATTA-CAC-G-TGAAAT-G-ATCAGAGT--A-TAA-ATT--A------ACAAGC-A-T--G-CGGTG-A----TTTTaaattccnnnnnnnnnnnnnnnnnnnnnnnnnaatccactaggcgtaaat
gi|16 : ttttttgcttcaaaaATGACTTTTGG-GCA-ATATAGTC--ATTGAAA-TTCTTAGACGCCACT--GTCTTTTATC-TGTACAAA------CA----AA-GGTT-AT-AT-CTACTCAA-att
gi|17 : TATCTCGCGTATTTAATTCATCTG--ATACGAAGTTAC-------G--AACTACCGTATAGTCTC-----A--T-TGTCAAA
gi|18 : GG-CGA-T-AACGGGG-AG-T--------G-TGTA-A-TT--AAA-C-TAT--
gi|19 : tatgtatcacgaaatctgactatttgaatcgtTCTT-----A--TATTTGAAAACAGAGTTATCG-GACCAAATTAT--GACC-AAAATAGTTGGATA
gi|2 : acTATCCAA-C----TATA-G-CGG--TCATTA---CG--TGA-CTT-AAGCGATTA-TT----TGTTTACCTATTA-AGAGTACCT------GTAAT-T--TACTATAGG-CG--T-AACGGGGGAG-T--------G-TGT--A-TT--AAA-C-CAT--TA-T--A-ACT-TTT-TTCA-TGCATT-AT-TAGAA-A-A---A-GTT--GGACCCCTGAC--CCG-AAAGAGC--AT--TAA--T-T---CTACA-AAA-----GA-TGA-TAT-A--T-T--TTA--TTTC--AGTTCGA--AAAAA---A--TT-TATTGC--------TTCA----------TTTGAAAA-AT-AG-TGTTTA-TAT-G-TT-AAT-G-ATTAGCGT--G-TAA--TT--A------ACGAGC-A-T--T-TGGTGAA----TTTTCGGCA-TTTTGC--A------TGT-ATAGAA-C-GTA-TTTTTCAACCT-TTT-TTCA---T--GTATCTGGAAAA--AAGTTG----GA-CA-TCTAGA------GTAAA---AGTTAAAAC-A-T-TAAAC---TA-TATGAAAC---A-T-GAAAA--A---T--TCAG-T----TC--AGA-AC---A-A--C--T-TT---ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCACGCGAT---------------------A-------TT----CAAA-------------ATGGCGGAC-GCCAC-CGGGAGTAAACAAAGCGCTTA--GCGT------C---------ATG---TG--AATGTTGTGTTATTAT-AAA-TATGTTTAA-TTGTGTTAT-GAATACAAGACTGACAAGAA-AG-A-AAATCATT-GCTTA-CCATGAAGTT-C--AGAAATG-TCCTTTCCTTGACTGACCATA-AATA-C--AGTGCT---TGCAAATGACTTTTGG-GAATAT--AATC--ATTGGAAATTCTTAGAAGCCATTT-GTCTTTTATT-TGTACAAA------CA----AA-GGTT-TG-AT-CTACTCAA-TATA--TCATTTGG-GTTATTGTT-G--AAGAATTTGTGGTTGTTTTAG-C--TATCCGATAATTGG-TT-GAAT-CGATC-TAGAGGACCTA-TTTCATAATTATGAGCATTGCATT--TTACAA-G--TAAT-AGAATGATTG---GC-AGGA-AAAA--CACAGAATTTAAC--AGTGACACCTAA-ACCTCCAATTTCAACA-AAAGCC-ACGTTAATTAAGTTAA-GC--ATGGAG-GTT-TATTCAT---GCATC-ATCAC-AAAAT-CAT--GAGGAT-CATGAGTATATCAAT-A--TCGCATATTCAACAT-T-TTTTT-CA-ACA------TGCAATTC------C--------C--CTG----------TAAGATTTAAG--TTTTCATTGTA--AAAG-C---AAAA--CA-----ATATTGT--T-GTGC-TCTT-TCTG---TTT-AATACTTTGTAATCATATGAA-TAAAA-TCTGATCAAAT-TAAAATCAAGGTGT-GA-ATGGG--GATT--TTAAGGT-AATT----AACATCCCTGTAACTCATAACTT---CCCTACTGTCAC----AAAATATCTCGCGTATTTAATTCATCTG--ATACGAA-CTAC-------GT----------ATAGTCTC-----A--T-TGTCAAAACAGAGTTATCG-GACCTAATTAT--GACC-GAAATAGTTGGATA
gi|20 : A---T--GTATCTGGAAAA--AAGTTG----GA-CA-TCTAGT------G
gi|3 : -TT----TGTTCTCCTATTA-AGAGTACCT------GTA-T-T--TACTATAGG-CGA-T-AACGGGGAA--T--------G-TGTG-A-TT--AAA-C-TAT--TA-T--A-ACT-TTT-TTCA-TGCATT-ATATACAATA-A---A-GTT--GGACCCCTGAC--CTG-AAAGAAC--AT--TAAATT-T---CTACA-AAA-----GA-TG---AT-A--T-T--TTAAGTTTC--AGTTCGG--AG-AATGAA--TT-TATTGCTCAAAA--TTTA----------TTTGAAAA-TA-AG-TGTGTA-TAG-GTTTCAAT-G-ATTATCGT--G-TAA-ATT--A------ACGAAC-A-T--A-CGGTGAA----TTTTCGGCA-TTTTGA--G------TGT-ATAAAAAC-GTA--TTTTCAACCT-TTT-TTCA---T--ATTTCTGGAAAA--AAGTTG----GA-CA-TCTAGT------GT-AA---AGTTAAAAC-A-C-CAAAC---TATTATGAAAC---A-T-GAAAAACA---T--TCAG-T----TG--AGA-ACCTAA-A--CTTT-TT---ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCAC-CGATATTGAAAAATTTA--------A-------TT----CAAA-------------AT-GCGGACAGCAAC-C-GGAGTAAACAAAG----------GT------C---------ATG---TG--AAAGTTGTGTTATTTA-AAA-TCTGTTTAATTTGTGTTAT-GAATA-AA----GACAAGAAGAG-A-AAATTATT-GCTTACCCATGAAGTT-C--AGAAATATTCCTTTCCTTGACTGACCACA-AATA-C-AAGTGCT---TGCAAATGACTTTTGA-GAA-A------C--ATTGAAAA-TCTTAGAAG-CACTT-GTCTTTTACT-TGTACAAA-------A----AA-GGTT-AT-AT-CTACTCAA-TACA--ATATTTGATGTTGTTGTTCG--AAGAATTTGT-GTTGTTTTAG-C--TATCCGATAATTGGTTT-CAATAAGTTC-TAGA-GACTTA-TTTCATAATTAGGAGCA-TGCA-T--TTACAAGG--TAATAAGAA--ATT----GC-AGGG-AAAAATCACAGAATTTAATCAAGAGACACCTAACACCT-CAATCTCAACA-AAAGCC-A-A--ACTTAAGTTAA-GC--ATGGAG-G-T-TATTCA----GCATCGATCAC-AAAA--CA----AGGAT-CATAAGTATAT-AAT-A--TCGCATATTCAACA-----TTTT-CA-ATA------TAT-GTCC------C--------C--CTG----------TAA-ATTTAAG--TTTCAATCGTAATAAAGACA--AAAA--CA-A---ATATTGTCTG-GTGCTTACTGTCTGT--TTT-AATACTTTGTAATCATATGAATTAAAA-TCTGATAAAAA-TTAAATCAAGTGGTAGACAT-GG--GGTT--TTGTGGTAAATT----AACAGCCCTGTAACTCAT
gi|4 : atATCCAAAC----TATT-G-CAAATCCATCA---CAATTGATCTTAGATCAATTA-TT----TGTC--CCTATAAGAGAGTACCT------GTT-T-T--TACTATAG--CGA-T-AACTGG--AG-T--------GACGTG-A-TT--AAA-C-TAT--TA-T--A-ACT-ATT-T-----------------AATA-A---A-GTT--GGACCCCTGAC--CTG-AAAGAGC--AT--TAA--T-TT--CTACA-AAA-----GA-TGA-TAG-A--T-T--GTA--TTTC--AGTTCGG--AAAAATG-A--TT-TATTTC--------TTCAAAATTCA---TTTGAAAA-AT-AG-T-TGTA-TAC-G-TCCAAT-G-ATTAACATATG-TAA-ATT--A------ACGAGC-A-T--G-TGGTGAA----TTTTCGGCA-TTTTGC--G------TGT-ATAAAAAC-GTA-TTTTTGAACCT-TTT-TTCA---T--ATTCCTGGAAAA--ATGTTG----AA-CA-TCTAGT------GTAAA---AG-TAAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAAACA---T--TCAG-T----TC--AGATCC---T-A--CT-T-TT---ATTGCTTCAAAATCGTCTTGAAAAT-TAC--GAATTTTTAC-CAATATTGA-------AAC------A-------TTTCGGCAAA-------------ATGGCGGAT-GCAAG-AGGGAGTAAACAA-------A--GCGT------C---------ATG---TG--GTATTTGCGTTCTTTTAAAA-TCTGT-----TTGTGTTAT-GAATA-AA----GACAAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATG-TCCTTTCCTTGACTGACCACA-AATA-C-AACTGCT---TGCAAATGACTTTTGG-GC--A---AACC--ATTGAAAA-TCTTAGAAGCCA-TT-GTATTTTACT-TGTACAAA------CATTTTA---GTT-TATAT-CTACTCAA-TATA--TCATTTGA-TGTGTTGTTGG--AAGAATTTGT-GTAGTTTTAG-CTATATCCGATAATTGGTTT-GAATAAGATC-T--A-GACCCA-TTTCATAATTAGGAGCA-TGCAT-------AT-G--TAATAAGAA--ATTG---GC-AGGGAAAAA--CAAAGAATTTAAC--AGTGACACCTAACATCT-CAGTTATAACA-AAAGCC-ACG----TTCAGTTAA-GC--ATGAAA-G-TGTATTCAT----CATC-ATCAC-AAAAT-CAT--GAGGAT-AATAAATATATCAATAA--TCGCATATTCAACATAT-TTTTT-CA-ACA------TATAATCCCATCCTC--------C--CTA----------TAAGATTTAAG--TTT-CATCGTAATAAAGAC---
gi|5 : TATCCCA-CACTTTATTTG-CGG--CCATCAGTTCG--TGA-TAT-TATCAAATA-------------------A-ATGGAACCT----------T-T--TACTATAGGTCGACT-AACCGGGGA--T--------G-T-TG-A-TT--AAC-C-AAT--TA-T--A-ACTAGTT-TTCA--GCATTTATATAGAATACA---ATGTT--GGACCCA-GAC--AAG-AAAGAGC--AT---AA--T-TTATCTACA-AAA-----GAATGA-TATTA--TCT--TTA--TTTTCGAGTCCGG--AGAA-T--A--TTACATTGC--------TTCAAAATCTCATCTATGAATA-AG-AG-TGTGTA--A--G-TTCAAT-GTATTATCGT--GATAT-ATTTAAC-----ACGAAC-A-T--A-CGGTGAA----TTT-CGGCA-GTTTGGTAG------TTT-ATAAAAAC-TTA-TTTATCATCAC-TTT-TTCA---T--ATT-CTGGAAAATTAAGTTG----GAACAATCTA-T------GTAAA----GTTAAAACTATC-CAAAC---TA-TATAATACTGAA-C-AAAAC--A---T--TCAG-TACATTA--AGA-AC---T----C--T-TTTTGATTGCT-CAAAATCTCCTTGAAAATCTAATTGAATTT-CAC-C-ATATTGA-------ATAAACATGA-------TTTAT-CAAATATGAGCGAATGTATGGCGGAC-GCAAC-CGGGAGTAAACAAAACG---------T------C---------ATG---TGTGAAAGTTGTGTTATTTT-AAAATCTGTTTAA-TTGTGTTAT-GAATA-AAGAC----AAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATA-ACCTCTCCTTGACGGACCACA-AATA-C-AAGTGCT---TGCAAATGACTTTTGG-GC--A---AACCATATTGAAAA-TCTTAGAAGCCA-TT-GTCTTTTACT-TGTACAAAT-----CA----A
gi|5 : a----AA-GGTT-TA--T-CTACTCAA-TAAT--TCAATTGA-TGTGTTGGG-GGAAAGAATTTGTAGtttnnnnnnnnnnnnnnnnnnnnnnnnncaaacaaggtttatctactcaataattcaattgatgtgttgggggaaagaatttgtagagt
gi|6 : atatcccacactttatttgcggccatcagttcgtgatattatcaaataaatggaaccttttactataggtcgactaaccggggatgttgattaaccaattataactagttttcagcatttatatagaatacaatgttggacccagacaagaaagagcataatttatctacaaaagaatgatattatctttattttcgagtccggagaatattacattgcttcaaaatctcatctatgaataagagtgtgtaagttcaatgtattatcgtgatatatttaacacgaacatacggtgaatttcggcagtttggtagtttataaaaacttatttatcatcactttttcatattctggaaaattaagttggaacaatctatgtaaagttaaaactatccaaactatataatactgaacaaaacattcagtacattaagaactctttttgattgctcaaaatctccttgaaaatctaattgaatttcaccatattgaataaacatgatttatcaaatatgagcgaatgtatggcggacgcaaccgggagtaaacaaaacgtcatgtgtgaaagttgtgttattttaaaatctgtttaattgtgttatgaataaagacaagaagagaaaatcattgcttacccatgaagttcagaaataacctctccttgacggaccacaaatacaagtgcttgcaaatgacttttgggcaaaccatattgaaaatcttagaagccattgtcttttacttgtacaaatcaatttnnnnnnnnnnnnnnnnnnnnnnnnncaaac---AACC--ATTGAAAAT-CTTAGAAGCCA-TT-GTTCTTTACT-TGTACAAA------CA----AA-GGTA-TATAT-CTACTCAA-TATA--TCATTTGA-TGTGTTGTT-GG-AAGAATTTGTG-TTGCTTTAG-C--TATCTGATAATAGG-TTTGAAT-A---------------A-TTTCATAATTAGGAGCA-TGCATT--C------G--TACTAAGAA--TTTGTCAGCTAGGG-AAAA--CACGGAATTTAAC--AGTGACACCTAACACC-----------CA-GA--CCGACG----TTAAGTTAATGCCAATGGAAAG-T-TATTCATCATGCAT---TCAC-AAAAT-CAT--GAGGATTCATAAGTGTA-CAATAA--TCACATATTCAACATATGTTTTTGCAGACA------TATGATTC------C--------CGCCTG----------TAAGATTTAAG--TTTC-ATCGCATTCAAGAC---AAAAAATAAA---ATATTGTGCT-GTTT-TTCT-TCTG---TTTTAATACTTTGTAATCATATGAATTAAAA-TCTGATAAAAT-T-AAATCAAGGTGT-GA-ATGGG--GGTT--TTATGGTAAATT----AACATCCCTGTAACTCATTACTT---CCCTATTagt
gi|6 : -TTAAATCAAGGTGT-GA-ATGGG--GTTT--TTAAGGTAAATT----AACATCCCTGTAATTCATTATTT---CCCTACTGTCACC---AAAATATCTCGCGTATTTAATTCATCTG--ATACGAA-CTACCTTT--AGTCAACAA--GGATAGTCTCATTTAA--T-TGTCAAAACAGAGTTATAG-AACCGAATTAT--GACC-GAAGTAGTTGGATAaaatcaaggtgtgaatggggtttttaaggtaaattaacatccctgtaattcattatttccctactgtcaccaaaatatctcgcgtatttaattcatctgatacgaactacctttagtcaacaaggatagtctcatttaattgtcaaaacagagttatagaaccgaattatgaccgaagtagttggata
gi|7 : aaccattgaaaatcttagaagccattgttctttacttgtacaaacaaaggtatatatctactcaatatatcatttgatgtgttgttggaagaatttgtgttgctttagctatctgataataggtttgaataatttcataattaggagcatgcattcgtactaagaatttgtcagctagggaaaacacggaatttaacagtgacacctaacacccagaccgacgttaagttaatgccaatggaaagttattcatcatgcattcacaaaatcatgaggattcataagtgtacaataatcacatattcaacatatgtttttgcagacatatgattcccgcctgtaagatttaagtttcatcgcattcaagacaaaaaataaaatattgtgctgtttttcttctgttttaatactttgtaatcatatgaattaaaatctgataaaattaaatcaaggtgtgaatgggggttttatggtaaattaacatccctgtaactcattacttcccta-G-CGG--TCATCA---CG--TGA-CTT-CAGCGATTA-TT----TGTTTACCTATCA-AGAGTACCT------GTA-T-T--TACTATAGG-CGA-T-AACGGGG-AG-T--------G-TGTA-A-TT--AAA-C-CAT--TA-T--A-ACT-TTT-TTCA-TATATT-ATATAGAAAA-A---A-GTT--GGACCCCTGAC--CCG-AAAGAGC--AT--TAAT-T-T---CTACA-AAA-----GA-TAA-TAT-A--T-T--TTA--TTTC--AGTTCGGAAAAAAAAG-A--TT-TATTGCTTCAAAA-TTCA----------TTTGAAAA-AT-AG-TGTTTA-TAC-G-TCTAAT-T-TTTAGTGT--G-TAA-ATA--A------ACAAAC-ATT--T-TGGTGAA----TTTTCGGCATTTTTGC--G------TGT-AATAAAAC-GTATTTTTTCAACCTATTT-TTCA---TACATATCTGGAAAA--AAGTTG----GA-CA-TCTAGT------GTAAA---AGTTAAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAATCA---T--TCAG-T----TC--AGA-AC---C-AACT--T-TT---ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCAC-AGATATTGA-------AAC------A-------TT----CAAA-------------ATGGCGGAC-GCAACAAGGGAGTAAACAAAGCGATTA--GCGTCATTACC---------ATG---TG--AAAGTTGCGTTATTTTAAAA-TCT
gi|8 : taGC--A------TGT-ATAAAAAT-GTA-ATTTTCAACCT-TTT-TACA---T--ATTTCTAGAAAA--CTTTTG----GA-CA-TCTAGTATAAGTGTAAA---AGTTAAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAA--AGTAT--TCAG-T----TC--AGA-AC---CTA--C--T-TTT--CTTGCTTCAAAATT------AAAA--------AATTTTCAC-CGATATTGA-------A--------ACTTAT--TT----CAAA-------------GTGGTGGAT-GCAAG-CGGGAGTAAACAA-GC----ATTGCAT------TTAATTTTGTATA---TG--TATGTAGTGCTATTTT-AAAATCTGTTT-----GTGTTAT-GAATA-AAGAC----AAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATA-TCCTTCCCTTGACTGACCACA-AATA-C-AAGTGCT---TGTGAATGGCTTTTAG-GC--A---AATC--ATTGAAAA-GCTTAGAAGCCA-TT-GTCTTTTACT-TGTACAAA------CA----AA-GGT-----------------TATA--TCAC---A-GTTGTTG---G--AAGAATTGGT-GTTGTGTTAG-C--TA
gi|9 : tatgTATCCAC-C----TTAT-G-TG---CCATCA---CG---GA-TTT-GATCAATTAATTGGTGTGTTGACCTATTA-AG-GTACCT------GTA-T-TATTACTATAGG-CCA-TCAACGGCGGAG-T--------G-TGTGCA-TTGAAAA-CATAT--TC-TCTA-ACG-TTT-TTCA-TGCATT-TAATAGAATA-AGGGA-GTTA-GGCCCCCTGATAGCTG--ACGAGTCGATTCTAA--T-T---TCATA-AAACATGGAA-TGA-TAT-A--T-TTCTTA--TTT---AG---GG--AAAATTG-AATTT-TATTGCTATGTAAATTCT----------CTTGAAAACATCAGTTGTGTATTACTG-TTCAATCG-ATAAACGT--G-TAAGAAT--A------ATGAGCAA-TGAT-TGGTGAATCTGTTTTCGG-A--TTTGC--GGTCTTCTGTCATAAAAAC-ATG--TTTGCACTGT-TTT-ATTG---T--TTTTTTGG--AA--AAGTT--------CA-TCTAGT------GTAAA---attgg
Alignments
lowQualScore : 1111 11111 111111 1111111111111 11 1111111 11111 11 11 111 11111 5555555555555555555555 111111 1111 111111111 11 111111 11 33333333333 1111 777777777777777777777777777777 3333333333333 666666666666666666666666666666 111 22222 111 222222 11 11 1 111111 111111 111 1111 111 22222222222222 11 111 11 11 3333 11 22222222222 111 1111 1111 22222 11 5555555555555555555555555555555 11 111 333333333 2222 1 1 333 1 1 1 11 11 1111 111 11 1 11 1111111 11 11111111 11
lowQualScore : 6 4444 5 5 77 777 55 5 666 4 11111 66 4 777777 4 4 66 4 4 4 7777777777777 4 4 4 11 4 4 55 4 66 4 4 4 4 0000000 77777 4 00 66 4 66 888 00 4 222 4 11111 4 4 4 55 4 55 55 55 55 0 66 55 4 7777777777777777777777 4444 4 8 55 8 11 4 4 1 55 4 4 66 777777 4 4 1111 9999 55 666666666 4 4 22 4 4 666 55 55 0 7777 7 3 000000 777 1 4 4 4 777 4 777 4 4 88 777 66 4 9999 66 55555555555 4 4444 1 5 77 5 777777777777777777777777777777 1111111111111 5 777 777777777777777777777777777777 000 77 1 888 6 6 88888 6 6 6 6 99 6 3 6 6 6 111 5 888888 33 88 2 7 5 5 999999 9999 5 888888 5 5 77 3 333 1 5555 5 6 99 0 0 11 1 8 555 1 8 8 66666666666666 0 11 444 8 8 11 0 11 1 9999 1 8 0 88 9999 8 11 8 8 8 55555555555 8 88 111 8 3 0 2222 0 0000 8 88888 11 3 2222222222222222222222222222222 3 11 88 6 0 444 222222222 3333 0 1 0 777 0 3 3 0 8 8 8 6 11 11 1 3 7777 5 777 6 33 0 0 0 11 0 5 6666666 1 11 66666666 6 8 1 11 8
lowQualScore : . .... . . .. ... .. . ... . ..... .. . ...... . . .. . . . ............. . . . .. . . .. . .. . . . . ....... ..... . .. .. . .. ... .. . ... . ..... . . . .. . .. .. .. .. . .. .. . ...................... .... . . .. . .. . . . .. . . .. ...... . . .... .... .. ......... . . .. . . ... .. .. . .... . . ...... ... . . . . ... . ... . . .. ... .. . .... .. ........... . .... . . .. . .............................. ............. . ... .............................. ... .. . ... . . ..... . . . . .. . . . . . ... . ...... .. .. . . . . ...... .... . ...... . . .. . ... . .... . . .. . . .. . . ... . . . .............. . .. ... . . .. . .. . .... . . . .. .... . .. . . . ........... . .. ... . . . .... . .... . ..... .. . ............................... . .. .. . . ... ......... .... . . . ... . . . . . . . . .. .. . . .... . ... . .. . . . .. . . ....... . .. ........ . . . .. .
lowQualScore : 7 2222 7 7 99 000 22 0 888 4 33333 11 4 222222 4 4 11 0 0 0 6666666666666 0 0 0 00 0 0 55 4 11 4 4 4 4 3333333 77777 4 66 11 4 11 000 66 4 222 4 11111 4 4 4 55 0 55 55 55 55 5 55 55 0 2222222222222222222222 5555 0 0 66 0 00 0 0 4 55 0 4 11 222222 4 4 6666 4444 11 000000000 4 4 11 4 0 444 00 00 3 7777 3 6 555555 000 9 4 4 4 888 4 888 4 4 33 888 11 4 4444 11 77777777777 4 0000 4 7 99 7 444444444444444444444444444444 4444444444444 7 111 999999999999999999999999999999 000 99 4 888 7 7 33333 7 7 7 7 22 7 2 7 7 7 777 7 555555 88 66 5 0 0 0 444444 4444 0 444444 0 0 99 9 666 4 0000 7 7 22 8 8 66 0 0 666 4 0 0 44444444444444 8 00 000 0 0 00 8 00 4 4444 0 0 8 88 2222 0 00 0 0 0 00000000000 0 88 888 0 8 8 6666 8 2222 0 00000 00 8 2222222222222222222222222222222 2 00 22 0 8 000 555555555 2222 0 0 0 555 0 2 2 0 0 8 0 0 00 00 4 8 0000 6 555 7 88 0 8 8 00 8 0 2222222 0 00 88888888 7 0 0 00 0
consensus : TATCCAA-C----TATT-G-CGG--CCATCACG--TGA-CTT-GATCGATTA-TT----TGTTNACCTATTA-AGAGTACCT------GTA-T-T--TACTATAGG-CGA-T-AACGGGGGAG-T--------G-TGTG-A-TT--AAA-C-TAT--TA-T--A-ACT-TTT-TTCA-TGCATT-ATATAGAATA-A---A-GTT--GGACCCCTGAC--CTG-AAAGAGC--AT--TAA--T-T---CTACA-AAA-----GA-TGA-TAT-A--T-T--TTA--TTTC--AGTTCGG--AGAAATG-A--TT-TATTGC--------TTCA----------TTTGAAAA-AT-AG-TGTGTA-TAC-G-TTCAAT-G-ATTAGCGT--G-TAA-ATT--A------ACGAGC-A-T--N-CGGTGAA----TTTTCGGCA-TTTTGC--G------TGT-ATAAAAAC-GTA-TTTTTCAACCT-TTT-TTCA---T--ATTTCTGGAAAA--AAGTTG----GA-CA-TCTAGT------GTAAA---AGTTAAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAA--A---T--TCAG-T----TC--AGAAC-CT--A--C--T-TT---ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCAC-CGATATTGA-------A--------A-------TT----CAAA-------------ATGGCGGAC-GCAAC-CGGGAGTAAACAAAGCG---A--GCGT------C---------ATG---TG--AAAGTTGCGTTATTTTAAAATCTGTTTAA-TTGTGTTAT-GAATA-AAGAC-GACAAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATA-TCCTTTCCTTGACTGACCACA-AATA-C-AAGTGCT---TGCAAATGACTTTTGG-GCAA---AACC--ATTGAAAATTCTTAGAAGCCACTT-GTCTTTTACT-TGTACAAA------CA----AA-GGTT-TA-AT-CTACTCAA-TATA--TCATTTGA-NTTGTTGTT-G--AAGAATTTGT-GTTGTTTTAG-C--TATCCGATAATTGGTTTGAATAAGATC-TAGAGGACCTA-TTTCATAATTAGGAGCA-TGCATT--TTACAA-G--TAATAAGAA--ATTG---GC-AGGG-AAAA--CACAGAATTTAAC--AGTGACACCTAACACCT-CAATTTCAACA-AAAGCC-ACG----TTAAGTTAA-GC--ATGGAG-G-T-TATTCAT---GCATC-ATCAC-AAAAT-CAT--GAGGAT-CATAAGTATATCAATAA--TCGCATATTCAACATAT-TTTTT-CA-----ACA--TATAATCC------C--------C--CTG----------TAAGATTTAAG--TTTCCATCGTAATAAAGAC---AAAA--CAAA---ATATTGTGCC-GTGC-TNCT-TCTGT--TTT-AATACTTTGTAATCATATGAATTAAAA-TCTGATAAAAT-TNAAATCAAGGTGT-GA-ATGGG--GGTT--TTAAGGTAAATT----AACATCCCTGTAACTCATTACTT---CCCTACTGTCACCA--AA-ATATCTCGCGTATTTAATTCATCTG--ATACGAACTACCGTT--A-GTCAACAA--GGATAGTCTC-----A--T-TGTCAAAACAGAGTTATCG-GACCNAATTAT--GACC-GAAATAGTTGGATA
Reference ( family-1174 ) : TATCCAA-C----TATT-G-CGG--CCATCACG--TGA-CTT-GATCGATTA-TT----TGTTNACCTATTA-AGAGTACCT------GTA-T-T--TACTATAGG-CGA-T-AACGGGGGAG-T--------G-TGTG-A-TT--AAA-C-TAT--TA-T--A-ACT-TTT-TTCA-TGCATT-ATATAGAATA-A---A-GTT--GGACCCCTGAC--CTG-AAAGAGC--AT--TAA--T-T---CTACA-AAA-----GA-TGA-TAT-A--T-T--TTA--TTTC--AGTTCGG--AGAAATG-A--TT-TATTGC--------TTCA----------TTTGAAAA-AT-AG-TGTGTA-TAC-G-TTCAAT-G-ATTAGCGT--G-TAA-ATT--A------ACGAGC-A-T--N-CGGTGAA----TTTTCGGCA-TTTTGC--G------TGT-ATAAAAAC-GTA-TTTTTCAACCT-TTT-TTCA---T--ATTTCTGGAAAA--AAGTTG----GA-CA-TCTAGT------GTAAA---AGTTAAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAA--A---T--TCAG-T----TC--AGAAC-C---A--C--T-TT---ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCAC-CGATATTGA-------A--------A-------TT----CAAA-------------ATGGCGGAC-GCAAC-CGGGAGTAAACAAAGCG---A--GCGT------C---------ATG---TG--AAAGTTGCGTTATTTTAAAATCTGTTTAA-TTGTGTTAT-GAATA-AAGAC-GACAAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATA-TCCTTTCCTTGACTGACCACA-AATA-C-AAGTGCT---TGCAAATGACTTTTGG-GCAA---AACC--ATTGAAAATTCTTAGAAGCCACTT-GTCTTTTACT-TGTACAAA------CA----AA-GGTT-TA-AT-CTACTCAA-TATA--TCATTTGA-NTTGTTGTT-G--AAGAATTTGT-GTTGTTTTAG-C--TATCCGATAATTGGTTTGAATAAGATC-TAGAGGACCTA-TTTCATAATTAGGAGCA-TGCATT--TTACAA-G--TAATAAGAA--ATTG---GC-AGGG-AAAA--CACAGAATTTAAC--AGTGACACCTAACACCT-CAATTTCAACA-AAAGCC-ACG---ATTAAGTTAA-GC--ATGGAG-G-T-TATTCAT---GCATC-ATCAC-AAAAT-CAT--GAGGAT-CATAAGTATATCAATAA--TCGCATATTCAACATAT-TTTTT-CA-----ACA--TATAATCC------C--------C--CTG----------TAAGATTTAAG--TTTCCATCGTAATAAAGAC---AAAA--CAAA---ATATTGTGCC-GTGC-TNCT-TCTG---TTT-AATACTTTGTAATCATATGAATTAAAA-TCTGATAAAAT-TNAAATCAAGGTGT-GA-ATGGG--GGTT--TTAAGGTAAATT----AACATCCCTGTAACTCATTACTT---CCCTACTGTCACCA--AA-ATATCTCGCGTATTTAATTCATCTG--ATACGAACTACCGTT--A-GTCAACAA--GGATAGTCTC-----A--T-TGTCAAAACAGAGTTATCG-GACCNAATTAT--GACC-GAAATAGTTGGATA
gi|1 : TATCCAA-C----TATT-GTCGG--TCATCACG--TGA--TT-GATCAATCA-TT-----GTTACCCTATTA-A-AGTACCTT-----GTA-T-T--TACTATAG--C-A-T-AAACGGGGAGCT--------G-CGTG-AATT--AAAAC-TAT--TAAT--AGACT-TTT-TTCAATGCATT-ATACA-AATA-ATA-A-GTTTAGGACCCCTGAC--CTGGAAAAAGC--AT---AA--T-T---CTACAGAAA-----GA-TGAATCT-GACT-T--TTA--TTCA--GGTTAGG--AGACATG-A--TT-TATTGC--------TTCAAAATTCGC--TTTGAAAA-AT-AG-TGTGTAGTAG-GATTCAAT-G--CTAGCGT--G-TAA-ATT--A------ACGAGC-A-T--TTCGTTGAA----TTTTCGGCA-TTTTGG--A------TGT-ATAAAAACGGTA-TTTTTCAACC--TGT-TTCA---T--ATTTCTGGGAAA--AAG-AG----GACCA-TCTAGT------GTAAA---AGTTAAAAC-A-C-TAAATAGATA-TATGAAAC---A-TAGAAAA--A---T--TCAGCT----TCAGAGAACGC---AT-C--TATT---ATTGCTTCAAAATCGTCTTGAAAAT-TAA--TAATTTTTAC-CGATATTGG-------A--------AAATGATCTT----CTAA-------------A-GGCGGAC-GCAAC-C-GGAGTAAACAA-------A--ACGT------C---------ATGATATG--ACAGTTGTGTTATTTTAAAATCTG-TTAA-TTGTGTTATGGAATA-GAAA--GACAAGAAGAGTACAAATCATTCGCTTACC--TAAGGTTGCGAAGAAATA-ACCTCTCCTTGAC-GACCACAGAATAGCAAAGTGCTAAATGCAA--GAC--TTGGCGCTA---AACCAAATTGAAAATGGCTAGAAG-CGCTTCGTTTTATACTATGATCAAATCAATTTA----AATGGTTATA-ATCCTACTCAAGTACAAGTCA-TTGA--TTGTTGTT-G--GAAAA--TGT--TTGTTTTAGCC--TATTCGAT-ATTCGTTGGAA-AAGATCTTAGAGGACTTATTTTCATAATATGGAGCA-TGCATCGATTACAA-GATCAATAAGAA--ATTG---GC-AGGG-AAAA--CACAAA--TTAAC--AGAGACACCTAACACCT-C-ATTTCAACACAAAGTC--CG----TTAAGTTAA-GC--AT-GAG-G-T-TATTCAT----C-----TCACAAAAATACATGCGAGGAT-CAT-AGTATATCAATAAGGGCGC-TATTCAACATAT-TTTTT-CAAATATACATGTATAATCC------CCCCCCCCAC--CTGTAAAACTTGTTAAAATTTAAGGATTTCCTTTGTAATAAAGACTTAAAAA--CAAGCGCATATTGTGCCTGTGC-TACT-TCTGATATTTAAATACTTTGTAA-AATATGAATTAAAATTCTGATAAAATATGATGCAAAGGTGT-TAGATGGGCTGGTTTGTTAA-GTGAGTTATTAAACA-CCCTGTAGCTCATTACTTAAATTCTACTGTCACCAGTAACATTTTTTGCGTA-TTA--TCATCTGATATACGAACTACCGTTTGA-GTCAACAA--GGATAGTCTC-----ATTT-TGTGAAAACAGAGTTATCGAGACCAAATTATGGGACCAAAAATAGTTGGA
gi|10 : aCGTCACG--GGA-CTT-AA-CTATTA-TT----TGT-AACCTAGTG--GACTGTTTCATACAGTT-TAT--TACAATAGG-CGA------GGGGAAG-TTGGGATATG-TGTA-A-TTTTAAA-C-TATACGA-T--A-ACT-TTTCTTCA-TACGTT---------TA------------GGAC-----GC--CTA-AATGA----AT--TAT--T-T---CGACA-AAA-----CA---G-TA--G--T-T--TCC--TTGC----TTCA-----AAAT-----------------------TCA----------TTTGAAAA-GT-AG-TGTATT-TTC-G-TGTAAT-A-ATCTACGT--A-CAA-ATT--ACATTTAACGAGC-A-T--G-TGGTGAT----GTTTGGGGA-TAGAGC--A------TGC-ATAAAAAC-GGA-ATTTTCAACTT-TTTATTCA---T--ACTTCTGGAA-------TTGTTTAGA-CA-TATAG---------------AG-TAAAAC-A-G-CACAC---TA-TATCAAAC---ATT-AAAAA--A---A--TCAA-T----CC--ATGCC-T---A--CT-T-TT---CTTACTTCAAat
gi|11 : TATCCAA-C----TATT-G-CGG--CCATCACG--TGA-TTT-GATGAATTA-TT----TGTTTACCTATTA-AGAGTACTT------GTA-T-T--TACTATAGG-CGA-T-AACGAGGA------------G-TGTG-A-TG--AAA-C-TAT--TT-T--A-ACT-TTT-TTCA-TCCATG-ATATTAAATA-T---A-G-T--GGACCCCTGAC--TTG-AAAGAGC--AT--TAC--TAT---CTACA-AAA-----GA-TGA-TAT-A--T-T--TTA--TTTC--AATTCGG--AAATATG-A--TT-TATTGCTTCAAAA-TTCA----------TTTTAAAA-AG-A---GTGTA-TAC-G-TCCAAT-G-ATTAACGT--G-T
gi|12 : TT-TTCACTGT--ATTTCTGAAAAT--CTTTTG----GA-CA-TGAAAT------ATATATATAGT----AC-A-CGTA--C---TG-CATGAAAC---A-T-AACAA--A---TAATCAA-T----CC--AGGGC-CT--A--C--T-TT----TTTCTTCAAAATCATCTT
gi|13 : --AA-ATATCTCGCGTATTTAATTCAACTG--GT--GAACTACCGTT--A-GTCAACAA--GGATAGTCTC-----A--T-TGTCAAAACAGAGTTATCG-AACCTAATTAT--GACC-GAAATAGTTGGAT
gi|14 : --T-T--TTA--TTTC--AGTTAGG--AGAAATG-A--TT-TATTGC--------TTCA----------
gi|15 : --------TTCA----------TTTGAAAA-GC-AG-TGATTA-CAC-G-TGAAAT-G-ATCAGAGT--A-TAA-ATT--A------ACAAGC-A-T--G-CGGTG-A----TTTTaaattccnnnnnnnnnnnnnnnnnnnnnnnnnaatccactaggcgtaaat
gi|16 : ttttttgcttcaaaaATGACTTTTGG-GCAATATAGTC--ATTGAAA-TTCTTAGACGCCACT--GTCTTTTATC-TGTACAAA------CA----AA-GGTT-AT-AT-CTACTCAA-att
gi|17 : TATCTCGCGTATTTAATTCATCTG--ATACGAA-----GTT--ACG--AACTACCGTATAGTCTC-----A--T-TGTCAAA
gi|18 : GG-CGA-T-AACGGGG-AG-T--------G-TGTA-A-TT--AAA-C-TAT--
gi|19 : tatgtatcacgaaatctgactatttgaatcgtTCTT-----A--TATTTGAAAACAGAGTTATCG-GACCAAATTAT--GACC-AAAATAGTTGGATA
gi|2 : acTATCCAA-C----TATA-G-CGG--TCATTACG--TGA-CTT-AAGCGATTA-TT----TGTTTACCTATTA-AGAGTACCT------GTAAT-T--TACTATAGG-CG--T-AACGGGGGAG-T--------G-TGT--A-TT--AAA-C-CAT--TA-T--A-ACT-TTT-TTCA-TGCATT-AT-TAGAA-A-A---A-GTT--GGACCCCTGAC--CCG-AAAGAGC--AT--TAA--T-T---CTACA-AAA-----GA-TGA-TAT-A--T-T--TTA--TTTC--AGTTCGA--AAAAA---A--TT-TATTGC--------TTCA----------TTTGAAAA-AT-AG-TGTTTA-TAT-G-TT-AAT-G-ATTAGCGT--G-TAA--TT--A------ACGAGC-A-T--T-TGGTGAA----TTTTCGGCA-TTTTGC--A------TGT-ATAGAA-C-GTA-TTTTTCAACCT-TTT-TTCA---T--GTATCTGGAAAA--AAGTTG----GA-CA-TCTAGA------GTAAA---AGTTAAAAC-A-T-TAAAC---TA-TATGAAAC---A-T-GAAAA--A---T--TCAG-T----TC--AGAAC-A---A--C--T-TT---ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCACGCGAT---------------------A-------TT----CAAA-------------ATGGCGGAC-GCCAC-CGGGAGTAAACAAAGCGCTTA--GCGT------C---------ATG---TG--AATGTTGTGTTATTAT-AAATATGTTTAA-TTGTGTTAT-GAATACAAGACTGACAAGAA-AG-A-AAATCATT-GCTTA-CCATGAAGTT-C--AGAAATG-TCCTTTCCTTGACTGACCATA-AATA-C--AGTGCT---TGCAAATGACTTTTGG-G-AATATAATC--ATTGGAAATTCTTAGAAGCCATTT-GTCTTTTATT-TGTACAAA------CA----AA-GGTT-TG-AT-CTACTCAA-TATA--TCATTTGG-GTTATTGTT-G--AAGAATTTGTGGTTGTTTTAG-C--TATCCGATAATTGG-TTGAAT-CGATC-TAGAGGACCTA-TTTCATAATTATGAGCATTGCATT--TTACAA-G--TAAT-AGAATGATTG---GC-AGGA-AAAA--CACAGAATTTAAC--AGTGACACCTAA-ACCTCCAATTTCAACA-AAAGCC-ACGTTAATTAAGTTAA-GC--ATGGAG-GTT-TATTCAT---GCATC-ATCAC-AAAAT-CAT--GAGGAT-CATGAGTATATCAAT-A--TCGCATATTCAACAT-T-TTTTT-CA-----ACA--TGCAATTC------C--------C--CTG----------TAAGATTTAAG--TTTTCATTGTA--AAAG-C---AAAA--C--A---ATATTGT--T-GTGC-TCTT-TCTG---TTT-AATACTTTGTAATCATATGAA-TAAAA-TCTGATCAAAT-TAAAATCAAGGTGT-GA-ATGGG--GATT--TTAAGGT-AATT----AACATCCCTGTAACTCATAACTT---CCCTACTGTCA-CA--AA-ATATCTCGCGTATTTAATTCATCTG--ATACGAACTA-CGT-----------------ATAGTCTC-----A--T-TGTCAAAACAGAGTTATCG-GACCTAATTAT--GACC-GAAATAGTTGGATA
gi|20 : A---T--GTATCTGGAAAA--AAGTTG----GA-CA-TCTAGT------G
gi|3 : -TT----TGTTCTCCTATTA-AGAGTACCT------GTA-T-T--TACTATAGG-CGA-T-AACGGGGAA--T--------G-TGTG-A-TT--AAA-C-TAT--TA-T--A-ACT-TTT-TTCA-TGCATT-ATATACAATA-A---A-GTT--GGACCCCTGAC--CTG-AAAGAAC--AT--TAAATT-T---CTACA-AAA-----GA-TG---AT-A--T-T--TTAAGTTTC--AGTTCGG--AG-AATGAA--TT-TATTGCTCAAAA--TTTA----------TTTGAAAA-TA-AG-TGTGTA-TAG-GTTTCAAT-G-ATTATCGT--G-TAA-ATT--A------ACGAAC-A-T--A-CGGTGAA----TTTTCGGCA-TTTTGA--G------TGT-ATAAAAAC-GTA--TTTTCAACCT-TTT-TTCA---T--ATTTCTGGAAAA--AAGTTG----GA-CA-TCTAGT------GT-AA---AGTTAAAAC-A-C-CAAAC---TATTATGAAAC---A-T-GAAAAACA---T--TCAG-T----TG--AGAAC-CTAAA--CTTT-TT---ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCAC-CGATATTGAAAAATTTA--------A-------TT----CAAA-------------AT-GCGGACAGCAAC-C-GGAGTAAACAAAG----------GT------C---------ATG---TG--AAAGTTGTGTTA-TTTAAAATCTGTTTAATTTGTGTTAT-GAATA-AA----GACAAGAAGAG-A-AAATTATT-GCTTACCCATGAAGTT-C--AGAAATATTCCTTTCCTTGACTGACCACA-AATA-C-AAGTGCT---TGCAAATGACTTTTGA-G-AA---A--C--ATTGAAAA-TCTTAGAAG-CACTT-GTCTTTTACT-TGTACAAA-------A----AA-GGTT-AT-AT-CTACTCAA-TACA--ATATTTGATGTTGTTGTTCG--AAGAATTTGT-GTTGTTTTAG-C--TATCCGATAATTGGTTTCAATAAGTTC-TAGA-GACTTA-TTTCATAATTAGGAGCA-TGCA-T--TTACAAGG--TAATAAGAA--ATT----GC-AGGG-AAAAATCACAGAATTTAATCAAGAGACACCTAACACCT-CAATCTCAACA-AAAGCC-AAA---CTTAAGTTAA-GC--ATGGAG-G-T-TATTCA----GCATCGATCAC-AAAA--CA----AGGAT-CATAAGTATAT-AAT-A--TCGCATATTCAACA-----TTTT-CA-----ATA--TAT-GTCC------C--------C--CTG----------TAA-ATTTAAG--TTTCAATCGTAATAAAGAC---AAAA--ACAA---ATATTGTCTG-GTGCTTACTGTCTGT--TTT-AATACTTTGTAATCATATGAATTAAAA-TCTGATAAAAA-TTAAATCAAGTGGTAGACAT-GG--GGTT--TTGTGGTAAATT----AACAGCCCTGTAACTCAT
gi|4 : atATCCAAAC----TATT-G-CAAATCCATCACAATTGATCTTAGATCAATTA-TT----TGTC--CCTATAAGAGAGTACCT------GTT-T-T--TACTATAG--CGA-T-AACTGG--AG-T--------GACGTG-A-TT--AAA-C-TAT--TA-T--A-ACT-ATT-T-----------------AATA-A---A-GTT--GGACCCCTGAC--CTG-AAAGAGC--AT--TAA--T-TT--CTACA-AAA-----GA-TGA-TAG-A--T-T--GTA--TTTC--AGTTCGG--AAAAATG-A--TT-TATTTC--------TTCAAAATTCA---TTTGAAAA-AT-AG-T-TGTA-TAC-G-TCCAAT-G-ATTAACATATG-TAA-ATT--A------ACGAGC-A-T--G-TGGTGAA----TTTTCGGCA-TTTTGC--G------TGT-ATAAAAAC-GTA-TTTTTGAACCT-TTT-TTCA---T--ATTCCTGGAAAA--ATGTTG----AA-CA-TCTAGT------GTAAA---AG-TAAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAAACA---T--TCAG-T----TC--AGATC-CT--A--CT-T-TT---ATTGCTTCAAAATCGTCTTGAAAAT-TAC--GAATTTTTAC-CAATATTGA-------AAC------A-------TTTCGGCAAA-------------ATGGCGGAT-GCAAG-AGGGAGTAAACAA-------A--GCGT------C---------ATG---TG--GTATTTGCGTTCTTTTAAAATCTGT-----TTGTGTTAT-GAATA-AA----GACAAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATG-TCCTTTCCTTGACTGACCACA-AATA-C-AACTGCT---TGCAAATGACTTTTGG-GC-A---AACC--ATTGAAAA-TCTTAGAAGCCA-TT-GTATTTTACT-TGTACAAA------CATTTTA---GTT-TATAT-CTACTCAA-TATA--TCATTTGA-TGTGTTGTTGG--AAGAATTTGT-GTAGTTTTAG-CTATATCCGATAATTGGTTTGAATAAGATC-TA---GACCCA-TTTCATAATTAGGAGCA-TGCAT-------AT-G--TAATAAGAA--ATTG---GC-AGGGAAAAA--CAAAGAATTTAAC--AGTGACACCTAACATCT-CAGTTATAACA-AAAGCC-ACG----TTCAGTTAA-GC--ATGAAA-G-TGTATTCAT----CATC-ATCAC-AAAAT-CAT--GAGGAT-AATAAATATATCAATAA--TCGCATATTCAACATAT-TTTTT-CA-----ACA--TATAATCCCATCCTC--------C--CTA----------TAAGATTTAAG--TTT-CATCGTAATAAAGAC---
gi|5 : TATCCCA-CACTTTATTTG-CGG--CCATCA-G--TT--CGT-GAT--ATTA-TC--------AA---ATAA-ATGGAACCT----------T-T--TACTATAGGTCGACT-AACCGGGGA--T--------G-T-TG-A-TT--AAC-C-AAT--TA-T--A-ACTAGTT-TTCA--GCATTTATATAGAATACA---ATGTT--GGACCCA-GAC--AAG-AAAGAGC--AT---AA--T-TTATCTACA-AAA-----GAATGA-TATTA--TCT--TTA--TTTTCGAGTCCGG--AGAA-T--A--TTACATTGC--------TTCAAAATCTCATCTATGAATA-AG-AG-TGTGTA--A--G-TTCAAT-GTATTATCGT--GATAT-ATTTAAC-----ACGAAC-A-T--A-CGGTGAA----TTT-CGGCA-GTTTGGTAG------TTT-ATAAAAAC-TTA-TTTATCATCAC-TTT-TTCA---T--ATT-CTGGAAAATTAAGTTG----GAACAATCTA-T------GTAAA----GTTAAAACTATC-CAAAC---TA-TATAATACTGAA-C-AAAAC--A---T--TCAG-TACATTA--AGAAC-T------C--T-TTTTGATTGCT-CAAAATCTCCTTGAAAATCTAATTGAATTT-CAC-C-ATATTGA-------ATAAACATGA-------TTTAT-CAAATATGAGCGAATGTATGGCGGAC-GCAAC-CGGGAGTAAACAAAACG---------T------C---------ATG---TGTGAAAGTTGTGTTATTTTAAAATCTGTTTAA-TTGTGTTAT-GAATA-AAGAC----AAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATA-ACCTCTCCTTGACGGACCACA-AATA-C-AAGTGCT---TGCAAATGACTTTTGG-GC-A---AACCATATTGAAAA-TCTTAGAAGCCA-TT-GTCTTTTACT-TGTACAAAT-----CA----A
gi|5 : a----AA-GGTT-TA--T-CTACTCAA-TAAT--TCAATTGA-TGTGTTGGG-GGAAAGAATTTGT-tttnnnnnnnnnnnnnnnnnnnnnnnnncaaacaaggtttatctactcaataattcaattgatgtgttgggggaaagaatttgtagagt
gi|6 : atatcccacactttatttgcggccatcagttcgtgatattatcaaataaatggaaccttttactataggtcgactaaccggggatgttgattaaccaattataactagttttcagcatttatatagaatacaatgttggacccagacaagaaagagcataatttatctacaaaagaatgatattatctttattttcgagtccggagaatattacattgcttcaaaatctcatctatgaataagagtgtgtaagttcaatgtattatcgtgatatatttaacacgaacatacggtgaatttcggcagtttggtagtttataaaaacttatttatcatcactttttcatattctggaaaattaagttggaacaatctatgtaaagttaaaactatccaaactatataatactgaacaaaacattcagtacattaagaactctttttgattgctcaaaatctccttgaaaatctaattgaatttcaccatattgaataaacatgatttatcaaatatgagcgaatgtatggcggacgcaaccgggagtaaacaaaacgtcatgtgtgaaagttgtgttattttaaaatctgtttaattgtgttatgaataaagacaagaagagaaaatcattgcttacccatgaagttcagaaataacctctccttgacggaccacaaatacaagtgcttgcaaatgacttttgggcaaaccatattgaaaatcttagaagccattgtcttttacttgtacaaatcaatttnnnnnnnnnnnnnnnnnnnnnnnnncaaac---AACC--ATTGAAAAT-CTTAGAAGCCA-TT-GTTCTTTACT-TGTACAAA------CA----AA-GGTA-TATAT-CTACTCAA-TATA--TCATTTGA-TGTGTTGTT-GG-AAGAATTTGT-GTTGCTTTAG-C--TATCTGATAATAGGTTTGAATAA-----------------TTTCATAATTAGGAGCA-TGCATT--C------G--TACTAAGAA--TTTGTCAGCTAGGG-AAAA--CACGGAATTTAAC--AGTGACACCTAACACC-----------CA-GA--CCGACG----TTAAGTTAATGCCAATGGAAAG-T-TATTCATCATGCAT---TCAC-AAAAT-CAT--GAGGATTCATAAGTGTA-CAATAA--TCACATATTCAACATATGTTTTTGCAG----ACA--TATGATTC------C--------CGCCTG----------TAAGATTTAAG--TTTC-ATCGCATTCAAGAC---AAAAAATAAA---ATATTGTGCT-GTTT-TTCT-TCTGT--TTT-AATACTTTGTAATCATATGAATTAAAA-TCTGATAAAAT-T-AAATCAAGGTGT-GA-ATGGG--GGTT--TTATGGTAAATT----AACATCCCTGTAACTCATTACTT---CCCTATTagagt
gi|6 : -TTAAATCAAGGTGT-GA-ATGGG--GTTT--TTAAGGTAAATT----AACATCCCTGTAATTCATTATTT---CCCTACTGTCACCA--AA-ATATCTCGCGTATTTAATTCATCTG--ATACGAACTACCTTT--A-GTCAACAA--GGATAGTCTCATTTAA--T-TGTCAAAACAGAGTTATAG-AACCGAATTAT--GACC-GAAGTAGTTGGATAaaatcaaggtgtgaatggggtttttaaggtaaattaacatccctgtaattcattatttccctactgtcaccaaaatatctcgcgtatttaattcatctgatacgaactacctttagtcaacaaggatagtctcatttaattgtcaaaacagagttatagaaccgaattatgaccgaagtagttggata
gi|7 : aaccattgaaaatcttagaagccattgttctttacttgtacaaacaaaggtatatatctactcaatatatcatttgatgtgttgttggaagaatttgtgttgctttagctatctgataataggtttgaataatttcataattaggagcatgcattcgtactaagaatttgtcagctagggaaaacacggaatttaacagtgacacctaacacccagaccgacgttaagttaatgccaatggaaagttattcatcatgcattcacaaaatcatgaggattcataagtgtacaataatcacatattcaacatatgtttttgcagacatatgattcccgcctgtaagatttaagtttcatcgcattcaagacaaaaaataaaatattgtgctgtttttcttctgttttaatactttgtaatcatatgaattaaaatctgataaaattaaatcaaggtgtgaatgggggttttatggtaaattaacatccctgtaactcattacttcccta-G-CGG--TCATCACG--TGA-CTT-CAGCGATTA-TT----TGTTTACCTATCA-AGAGTACCT------GTA-T-T--TACTATAGG-CGA-T-AACGGGG-AG-T--------G-TGTA-A-TT--AAA-C-CAT--TA-T--A-ACT-TTT-TTCA-TATATT-ATATAGAAAA-A---A-GTT--GGACCCCTGAC--CCG-AAAGAGC--AT--TAAT-T-T---CTACA-AAA-----GA-TAA-TAT-A--T-T--TTA--TTTC--AGTTCGGAAAAAAAAG-A--TT-TATTGCTTCAAAA-TTCA----------TTTGAAAA-AT-AG-TGTTTA-TAC-G-TCTAAT-T-TTTAGTGT--G-TAA-ATA--A------ACAAAC-ATT--T-TGGTGAA----TTTTCGGCATTTTTGC--G------TGT-AATAAAAC-GTATTTTTTCAACCTATTT-TTCA---TACATATCTGGAAAA--AAGTTG----GA-CA-TCTAGT------GTAAA---AGTTAAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAATCA---T--TCAG-T----TC--AGAAC-C---AACT--T-TT---ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCAC-AGATATTGA-------AAC------A-------TT----CAAA-------------ATGGCGGAC-GCAACAAGGGAGTAAACAAAGCGATTA--GCGTCATTACC---------ATG---TG--AAAGTTGCGTTATTTTAAAATCT
gi|8 : taGC--A------TGT-ATAAAAAT-GTA-ATTTTCAACCT-TTT-TACA---T--ATTTCTAGAAAA--CTTTTG----GA-CA-TCTAGTATAAGTGTAAA---AGTTAAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAA--AGTAT--TCAG-T----TC--AGAAC-CT--A--C--T-TTT--CTTGCTTCAAAATT------AAAA--------AATTTTCAC-CGATATTGA-------A--------ACTTAT--TT----CAAA-------------GTGGTGGAT-GCAAG-CGGGAGTAAACAA-GC----ATTGCAT------TTAATTTTGTATA---TG--TATGTAGTGCTATTTTAAAATCTGTTT-----GTGTTAT-GAATA-AAGAC----AAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATA-TCCTTCCCTTGACTGACCACA-AATA-C-AAGTGCT---TGTGAATGGCTTTTAG-GC-A---AATC--ATTGAAAA-GCTTAGAAGCCA-TT-GTCTTTTACT-TGTACAAA------CA----AA-GGT-----------------TATA--TCAC---A-GTTGTTG---G--AAGAATTGGT-GTTGTGTTAG-C--TA
gi|9 : tatgTATCCAC-C----TTAT-G-TG---CCATCACG---GA-TTT-GATCAATTAATTGGTGTGTTGACCTATTA-AG-GTACCT------GTA-T-TATTACTATAGG-CCA-TCAACGGCGGAG-T--------G-TGTGCA-TTGAAAA-CATAT--TC-TCTA-ACG-TTT-TTCA-TGCATT-TAATAGAATA-AGGGA-GTTA-GGCCCCCTGATAGCTG--ACGAGTCGATTCTAA--T-T---TCATA-AAACATGGAA-TGA-TAT-A--T-TTCTTA--TTT---AG---GG--AAAATTG-AATTT-TATTGCTATGTAAATTCT----------CTTGAAAACATCAGTTGTGTATTACTG-TTCAATCG-ATAAACGT--G-TAAGAAT--A------ATGAGCAA-TGAT-TGGTGAATCTGTTTTCGG-A--TTTGC--GGTCTTCTGTCATAAAAAC-ATG--TTTGCACTGT-TTT-ATTG---T--TTTTTTGG--AA--AAGTT--------CA-TCTAGT------GTAAA---attgg
Alignments
lowQualScore : 1111 11111 111111 1111111111111 11 1111111 11111 11 11 111 11111 5555555555555555555555 111111 1111 111111111 11 111111 111111 111111 111111 11 7777777777777777777777777777777777777777777777777 666666666666666666666666666666 111 111 22222 111 222222 11 11 1 111111 111111 111 11 11 111 222222222222 11 111 11 11 222222222 11 22222222222 111 1111 1111 22222 11 5555555555555555555555555555555 11 111 333333333 2222 1 1 2222 1 1 11 11 1111 111 11 1 11 1111111 11 11111111 11
lowQualScore : 6 4444 5 5 77 777 55 5 666 4 11111 66 4 777777 4 4 66 4 4 4 7777777777777 4 4 4 11 4 4 55 4 66 4 4 4 4 0000000 77777 4 00 66 4 66 888 00 4 222 4 11111 4 4 4 55 4 55 55 55 55 0 66 55 4 7777777777777777777777 4444 4 8 55 8 11 4 4 1 55 4 4 66 777777 4 4 1111 9999 55 666666666 4 4 22 4 4 666 55 55 0 7777 7 3 000000 777 1 4 4 4 777 4 777 4 4 777777 66 4 9999 4 222222 4 777777 00 1 5 77 5 5555555555555555555555555555555555555555555555555 5 777 777777777777777777777777777777 000 77 1 333 6 6 1 99999 6 6 6 6 99 6 3 6 6 6 111 5 111111 5 33 88 2 7 5 5 999999 9999 5 888888 5 5 77 3 333 1 5 99 5 6 11 0 0 11 1 8 555 1 8 8 0 666666666666 0 11 444 8 99 0 11 1 9999 1 8 0 666666666 8 11 8 8 8 55555555555 8 88 111 8 3 0 2222 0 0000 8 88888 11 3 2222222222222222222222222222222 3 11 88 6 0 444 222222222 3333 0 1 0 0000 3 3 0 8 8 8 6 11 11 1 3 7777 5 777 6 33 0 0 0 11 0 5 6666666 1 11 66666666 6 8 1 11 8
lowQualScore : . .... . . .. ... .. . ... . ..... .. . ...... . . .. . . . ............. . . . .. . . .. . .. . . . . ....... ..... . .. .. . .. ... .. . ... . ..... . . . .. . .. .. .. .. . .. .. . ...................... .... . . .. . .. . . . .. . . .. ...... . . .... .... .. ......... . . .. . . ... .. .. . .... . . ...... ... . . . . ... . ... . . ...... .. . .... . ...... . ...... .. . . .. . ................................................. . ... .............................. ... .. . ... . . . ..... . . . . .. . . . . . ... . ...... . .. .. . . . . ...... .... . ...... . . .. . ... . . .. . . .. . . .. . . ... . . . . ............ . .. ... . .. . .. . .... . . . ......... . .. . . . ........... . .. ... . . . .... . .... . ..... .. . ............................... . .. .. . . ... ......... .... . . . .... . . . . . . . .. .. . . .... . ... . .. . . . .. . . ....... . .. ........ . . . .. .
lowQualScore : 7 2222 7 7 99 000 22 0 888 4 33333 11 4 222222 4 4 11 0 0 0 6666666666666 0 0 0 00 0 0 55 4 11 4 4 4 4 3333333 77777 4 66 11 4 11 000 66 4 222 4 11111 4 4 4 55 0 55 55 55 55 5 55 55 0 2222222222222222222222 5555 0 0 66 0 00 0 0 4 55 0 4 11 222222 4 4 6666 4444 11 000000000 4 4 11 4 0 444 00 00 3 7777 3 6 555555 000 9 4 4 4 888 4 888 4 4 111111 11 4 4444 4 888888 4 444444 77 4 7 99 7 6666666666666666666666666666666666666666666666666 7 111 999999999999999999999999999999 000 99 4 000 7 7 0 77777 7 7 7 7 22 7 2 7 7 7 777 7 555555 1 88 66 5 0 0 0 444444 4444 0 444444 0 0 99 9 666 4 7 33 7 7 00 8 8 66 0 0 666 4 0 0 8 444444444444 8 00 000 0 00 8 00 4 4444 0 0 8 888888888 0 00 0 0 0 00000000000 0 88 888 0 8 8 6666 8 2222 0 00000 00 8 2222222222222222222222222222222 2 00 22 0 8 000 555555555 2222 0 0 0 8888 2 2 0 0 8 0 0 00 00 4 8 0000 6 555 7 88 0 8 8 00 8 0 2222222 0 00 88888888 7 0 0 00 0
consensus : TATCCAA-C----TATT-G-CGG--CCATCACG--TGA-CTT-GATCGATTA-TT----TGTTNACCTATTA-AGAGTACCT------GTA-T-T--TACTATAGG-CGA-T-AACGGGGGAG-T--------G-TGTG-A-TT--AAA-C-TAT--TA-T--A-ACT-TTT-TTCA-TGCATT-ATATAGAATA-A---A-GTT--GGACCCCTGAC--CTG-AAAGAGC--AT--TAA--T-T---CTACA-AAA-----GA-TGA-TAT-A--T-T--TTA--TTTC--AGTTCGG--AGAAATG-A--TT-TATTGC--------TTCA----------TTTGAAAA-AT-AG-TGTGTA-TAC-G-TTCAAT-G-ATTAGCGT--G-TAA-ATT--A------ACGAGC-A-T--N-CGGTGAA----TTTTCGGCA-TTTTGC--G------TGT-ATAAAAAC-GTA-TTTTTCAACCT-TTT-TTCA---T--ATTTCTGGAAAA--AAGTTG----GA-CA-TCTAGT------GTAAA---AGTTAAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAA--A---T--TCAG-T----TCA-GA------AC-CTA----C-TTT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCAC-CGATATTGA-------A--------A--T----TT---C---AAA-------------ATGGCGGAC-GCAAC-CGGGAGTAAACAAAGCG---A--GCGT------C---------ATG---TG--AAAGTTGCGTTATTTTAAAATCTGTTTAA-TTGTGTTAT-GAATA-AAGAC-GACAAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATA-TCCTTTCCTTGACTGACCACA-AATA-C-AAGTGCT---TGCAAATGACTTTTGG-GCAA---AACC--ATTGAAAATTCTTAGAAGCCACTT-GTCTTTTACT-TGTACAAA------CA----AA-GGTT-TA-AT-CTACTCAA-TATA--TCATTTGA-NTTGTTGTT-GG-AAGAATTTGT-GTTGTTTTAG-CTAT--CCGATAATTGGTTTGAATAAGATC-TAGAGGACCTA-TTTCATAATTAGGAGCA-TGCATT--TTACAA-G--TAATAAGAA--ATTG---GC-AGGGAAAAA-CACAGAATTTAAC--AGTGACACCTAACACCT-CAATTTCAACA-AAAGCC--ACG----TTAAGTTAA-GC--ATGGAG-G-T-TATTCAT---GCATC-ATCAC-AAAAT-CAT--GAGGAT-CATAAGTATATCAATAA--TCGCATATTCAACATAT-TTTTT-CA-----ACA--TATAATCC------C--------C--CTG----------TAAGATTTAAG--TTTCCATCGTAATAAAGAC---AAAA--CAAA---ATATTGTGCC-GTGC-TNCT-TCTG---TTTTAATACTTTGTAATCATATGAATTAAAA-TCTGATAAAAT-TNAAATCAAGGTGT-GA-ATGGG--GGTT--TTAAGGTAAATT----AACATCCCTGTAACTCATTACTT---CCCTACTGTCACCA--AA-ATATCTCGCGTATTTAATTCATCTG--ATACGAACTACCGTT--A-GTCAACAA--GGATAGTCTC-----A--T-TGTCAAAACAGAGTTATCG-GACCNAATTAT--GACC-GAAATAGTTGGATA
Reference ( family-1174 ) : TATCCAA-C----TATT-G-CGG--CCATCACG--TGA-CTT-GATCGATTA-TT----TGTTNACCTATTA-AGAGTACCT------GTA-T-T--TACTATAGG-CGA-T-AACGGGGGAG-T--------G-TGTG-A-TT--AAA-C-TAT--TA-T--A-ACT-TTT-TTCA-TGCATT-ATATAGAATA-A---A-GTT--GGACCCCTGAC--CTG-AAAGAGC--AT--TAA--T-T---CTACA-AAA-----GA-TGA-TAT-A--T-T--TTA--TTTC--AGTTCGG--AGAAATG-A--TT-TATTGC--------TTCA----------TTTGAAAA-AT-AG-TGTGTA-TAC-G-TTCAAT-G-ATTAGCGT--G-TAA-ATT--A------ACGAGC-A-T--N-CGGTGAA----TTTTCGGCA-TTTTGC--G------TGT-ATAAAAAC-GTA-TTTTTCAACCT-TTT-TTCA---T--ATTTCTGGAAAA--AAGTTG----GA-CA-TCTAGT------GTAAA---AGTTAAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAA--A---T--TCAG-T----TCA-GA------AC-CTA----C-TTT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCAC-CGATATTGA-------A--------A-------TT---C---AAA-------------ATGGCGGAC-GCAAC-CGGGAGTAAACAAAGCG---A--GCGT------C---------ATG---TG--AAAGTTGCGTTATTTTAAAATCTGTTTAA-TTGTGTTAT-GAATA-AAGAC-GACAAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATA-TCCTTTCCTTGACTGACCACA-AATA-C-AAGTGCT---TGCAAATGACTTTTGG-GCAA---AACC--ATTGAAAATTCTTAGAAGCCACTT-GTCTTTTACT-TGTACAAA------CA----AA-GGTT-TA-AT-CTACTCAA-TATA--TCATTTGA-NTTGTTGTT-G--AAGAATTTGT-GTTGTTTTAG-CTAT--CCGATAATTGGTTTGAATAAGATC-TAGAGGACCTA-TTTCATAATTAGGAGCA-TGCATT--TTACAA-G--TAATAAGAA--ATTG---GC-AGGGAAAA--CACAGAATTTAAC--AGTGACACCTAACACCT-CAATTTCAACA-AAAGCC--ACG----TTAAGTTAA-GC--ATGGAG-G-T-TATTCAT---GCATC-ATCAC-AAAAT-CAT--GAGGAT-CATAAGTATATCAATAA--TCGCATATTCAACATAT-TTTTT-CA-----ACA--TATAATCC------C--------C--CTG----------TAAGATTTAAG--TTTCCATCGTAATAAAGAC---AAAA--CAAA---ATATTGTGCC-GTGC-TNCT-TCTG---TTTTAATACTTTGTAATCATATGAATTAAAA-TCTGATAAAAT-TNAAATCAAGGTGT-GA-ATGGG--GGTT--TTAAGGTAAATT----AACATCCCTGTAACTCATTACTT---CCCTACTGTCACCA--AA-ATATCTCGCGTATTTAATTCATCTG--ATACGAACTACCGTT--A-GTCAACAA--GGATAGTCTC-----A--T-TGTCAAAACAGAGTTATCG-GACCNAATTAT--GACC-GAAATAGTTGGATA
gi|1 : TATCCAA-C----TATT-GTCGG--TCATCACG--TGA--TT-GATCAATCA-TT-----GTTACCCTATTA-A-AGTACCTT-----GTA-T-T--TACTATAG--C-A-T-AAACGGGGAGCT--------G-CGTG-AATT--AAAAC-TAT--TAAT--AGACT-TTT-TTCAATGCATT-ATACA-AATA-ATA-A-GTTTAGGACCCCTGAC--CTGGAAAAAGC--AT---AA--T-T---CTACAGAAA-----GA-TGAATCT-GACT-T--TTA--TTCA--GGTTAGG--AGACATG-A--TT-TATTGC--------TTCAAAATTCGC--TTTGAAAA-AT-AG-TGTGTAGTAG-GATTCAAT-G--CTAGCGT--G-TAA-ATT--A------ACGAGC-A-T--TTCGTTGAA----TTTTCGGCA-TTTTGG--A------TGT-ATAAAAACGGTA-TTTTTCAACC--TGT-TTCA---T--ATTTCTGGGAAA--AAG-AG----GACCA-TCTAGT------GTAAA---AGTTAAAAC-A-C-TAAATAGATA-TATGAAAC---A-TAGAAAA--A---T--TCAGCT----TCA-GAGAACGCAT-CTA-------TT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--TAATTTTTAC-CGATATTGG-------A--------AAATGATCTT---C---TAA-------------A-GGCGGAC-GCAAC-C-GGAGTAAACAA-------A--ACGT------C---------ATGATATG--ACAGTTGTGTTATTTTAAAATCTG-TTAA-TTGTGTTATGGAATA-GAAA--GACAAGAAGAGTACAAATCATTCGCTTACC--TAAGGTTGCGAAGAAATA-ACCTCTCCTTGAC-GACCACAGAATAGCAAAGTGCTAAATGCAA--GAC--TTGGCGCTA---AACCAAATTGAAAATGGCTAGAAG-CGCTTCGTTTTATACTATGATCAAATCAATTTA----AATGGTTATA-ATCCTACTCAAGTACAAGTCA-TTGA--TTGTTGTT-G--GAAAA--TGT--TTGTTTTAGCCTAT--TCGAT-ATTCGTTGGAA-AAGATCTTAGAGGACTTATTTTCATAATATGGAGCA-TGCATCGATTACAA-GATCAATAAGAA--ATTG---GC-AGGGAAAA--CACAAA--TTAAC--AGAGACACCTAACACCT-C-ATTTCAACACAAAGTC---CG----TTAAGTTAA-GC--AT-GAG-G-T-TATTCAT----C-----TCACAAAAATACATGCGAGGAT-CAT-AGTATATCAATAAGGGCGC-TATTCAACATAT-TTTTT-CAAATATACATGTATAATCC------CCCCCCCCAC--CTGTAAAACTTGTTAAAATTTAAGGATTTCCTTTGTAATAAAGACTTAAAAA--CAAGCGCATATTGTGCCTGTGC-TACT-TCTGATATTTAAATACTTTGTAA-AATATGAATTAAAATTCTGATAAAATATGATGCAAAGGTGT-TAGATGGGCTGGTTTGTTAA-GTGAGTTATTAAACA-CCCTGTAGCTCATTACTTAAATTCTACTGTCACCAGTAACATTTTTTGCGTA-TTA--TCATCTGATATACGAACTACCGTTTGA-GTCAACAA--GGATAGTCTC-----ATTT-TGTGAAAACAGAGTTATCGAGACCAAATTATGGGACCAAAAATAGTTGGA
gi|10 : aCGTCACG--GGA-CTT-AA-CTATTA-TT----TGT-AACCTAGTG--GACTGTTTCATACAGTT-TAT--TACAATAGG-CGA------GGGGAAG-TTGGGATATG-TGTA-A-TTTTAAA-C-TATACGA-T--A-ACT-TTTCTTCA-TACGTT---------TA------------GGAC-----GC--CTA-AATGA----AT--TAT--T-T---CGACA-AAA-----CA---G-TA--G--T-T--TCC--TTGC----TTCA-----AAAT-----------------------TCA----------TTTGAAAA-GT-AG-TGTATT-TTC-G-TGTAAT-A-ATCTACGT--A-CAA-ATT--ACATTTAACGAGC-A-T--G-TGGTGAT----GTTTGGGGA-TAGAGC--A------TGC-ATAAAAAC-GGA-ATTTTCAACTT-TTTATTCA---T--ACTTCTGGAA-------TTGTTTAGA-CA-TATAG---------------AG-TAAAAC-A-G-CACAC---TA-TATCAAAC---ATT-AAAAA--A---A--TCAA-T----CCATG--------C-CTA----CTTTT-CTTACTTCAAat
gi|11 : TATCCAA-C----TATT-G-CGG--CCATCACG--TGA-TTT-GATGAATTA-TT----TGTTTACCTATTA-AGAGTACTT------GTA-T-T--TACTATAGG-CGA-T-AACGAGGA------------G-TGTG-A-TG--AAA-C-TAT--TT-T--A-ACT-TTT-TTCA-TCCATG-ATATTAAATA-T---A-G-T--GGACCCCTGAC--TTG-AAAGAGC--AT--TAC--TAT---CTACA-AAA-----GA-TGA-TAT-A--T-T--TTA--TTTC--AATTCGG--AAATATG-A--TT-TATTGCTTCAAAA-TTCA----------TTTTAAAA-AG-A---GTGTA-TAC-G-TCCAAT-G-ATTAACGT--G-T
gi|12 : TT-TTCACTGT--ATTTCTGAAAAT--CTTTTG----GA-CA-TGAAAT------ATATATATAGT----AC-A-CGTA--C---TG-CATGAAAC---A-T-AACAA--A---TAATCAA-T----CCA-GG------GC-CTA----C-TTT--TTTCTTCAAAATCATCTT
gi|13 : --AA-ATATCTCGCGTATTTAATTCAACTG--GT--GAACTACCGTT--A-GTCAACAA--GGATAGTCTC-----A--T-TGTCAAAACAGAGTTATCG-AACCTAATTAT--GACC-GAAATAGTTGGAT
gi|14 : --T-T--TTA--TTTC--AGTTAGG--AGAAATG-A--TT-TATTGC--------TTCA----------
gi|15 : --------TTCA----------TTTGAAAA-GC-AG-TGATTA-CAC-G-TGAAAT-G-ATCAGAGT--A-TAA-ATT--A------ACAAGC-A-T--G-CGGTG-A----TTTTaaattccnnnnnnnnnnnnnnnnnnnnnnnnnaatccactaggcgtaaat
gi|16 : ttttttgcttcaaaaATGACTTTTGG-GCAATATAGTC--ATTGAAA-TTCTTAGACGCCACT--GTCTTTTATC-TGTACAAA------CA----AA-GGTT-AT-AT-CTACTCAA-att
gi|17 : TATCTCGCGTATTTAATTCATCTG--ATACGAA-----GTT--ACG--AACTACCGTATAGTCTC-----A--T-TGTCAAA
gi|18 : GG-CGA-T-AACGGGG-AG-T--------G-TGTA-A-TT--AAA-C-TAT--
gi|19 : tatgtatcacgaaatctgactatttgaatcgtTCTT-----A--TATTTGAAAACAGAGTTATCG-GACCAAATTAT--GACC-AAAATAGTTGGATA
gi|2 : acTATCCAA-C----TATA-G-CGG--TCATTACG--TGA-CTT-AAGCGATTA-TT----TGTTTACCTATTA-AGAGTACCT------GTAAT-T--TACTATAGG-CG--T-AACGGGGGAG-T--------G-TGT--A-TT--AAA-C-CAT--TA-T--A-ACT-TTT-TTCA-TGCATT-AT-TAGAA-A-A---A-GTT--GGACCCCTGAC--CCG-AAAGAGC--AT--TAA--T-T---CTACA-AAA-----GA-TGA-TAT-A--T-T--TTA--TTTC--AGTTCGA--AAAAA---A--TT-TATTGC--------TTCA----------TTTGAAAA-AT-AG-TGTTTA-TAT-G-TT-AAT-G-ATTAGCGT--G-TAA--TT--A------ACGAGC-A-T--T-TGGTGAA----TTTTCGGCA-TTTTGC--A------TGT-ATAGAA-C-GTA-TTTTTCAACCT-TTT-TTCA---T--GTATCTGGAAAA--AAGTTG----GA-CA-TCTAGA------GTAAA---AGTTAAAAC-A-T-TAAAC---TA-TATGAAAC---A-T-GAAAA--A---T--TCAG-T----TCA-GA------AC-A-A----C-TTT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCACGCGAT---------------------A-------TT---C---AAA-------------ATGGCGGAC-GCCAC-CGGGAGTAAACAAAGCGCTTA--GCGT------C---------ATG---TG--AATGTTGTGTTATTAT-AAATATGTTTAA-TTGTGTTAT-GAATACAAGACTGACAAGAA-AG-A-AAATCATT-GCTTA-CCATGAAGTT-C--AGAAATG-TCCTTTCCTTGACTGACCATA-AATA-C--AGTGCT---TGCAAATGACTTTTGG-G-AATATAATC--ATTGGAAATTCTTAGAAGCCATTT-GTCTTTTATT-TGTACAAA------CA----AA-GGTT-TG-AT-CTACTCAA-TATA--TCATTTGG-GTTATTGTT-G--AAGAATTTGTGGTTGTTTTAG-CTAT--CCGATAATTGG-TTGAAT-CGATC-TAGAGGACCTA-TTTCATAATTATGAGCATTGCATT--TTACAA-G--TAAT-AGAATGATTG---GC-AGGAAAAA--CACAGAATTTAAC--AGTGACACCTAA-ACCTCCAATTTCAACA-AAAGCC--ACGTTAATTAAGTTAA-GC--ATGGAG-GTT-TATTCAT---GCATC-ATCAC-AAAAT-CAT--GAGGAT-CATGAGTATATCAAT-A--TCGCATATTCAACAT-T-TTTTT-CA-----ACA--TGCAATTC------C--------C--CTG----------TAAGATTTAAG--TTTTCATTGTA--AAAG-C---AAAA--C--A---ATATTGT--T-GTGC-TCTT-TCTG----TTTAATACTTTGTAATCATATGAA-TAAAA-TCTGATCAAAT-TAAAATCAAGGTGT-GA-ATGGG--GATT--TTAAGGT-AATT----AACATCCCTGTAACTCATAACTT---CCCTACTGTCA-CA--AA-ATATCTCGCGTATTTAATTCATCTG--ATACGAACTA-CGT-----------------ATAGTCTC-----A--T-TGTCAAAACAGAGTTATCG-GACCTAATTAT--GACC-GAAATAGTTGGATA
gi|20 : A---T--GTATCTGGAAAA--AAGTTG----GA-CA-TCTAGT------G
gi|3 : -TT----TGTTCTCCTATTA-AGAGTACCT------GTA-T-T--TACTATAGG-CGA-T-AACGGGGAA--T--------G-TGTG-A-TT--AAA-C-TAT--TA-T--A-ACT-TTT-TTCA-TGCATT-ATATACAATA-A---A-GTT--GGACCCCTGAC--CTG-AAAGAAC--AT--TAAATT-T---CTACA-AAA-----GA-TG---AT-A--T-T--TTAAGTTTC--AGTTCGG--AG-AATGAA--TT-TATTGCTCAAAA--TTTA----------TTTGAAAA-TA-AG-TGTGTA-TAG-GTTTCAAT-G-ATTATCGT--G-TAA-ATT--A------ACGAAC-A-T--A-CGGTGAA----TTTTCGGCA-TTTTGA--G------TGT-ATAAAAAC-GTA--TTTTCAACCT-TTT-TTCA---T--ATTTCTGGAAAA--AAGTTG----GA-CA-TCTAGT------GT-AA---AGTTAAAAC-A-C-CAAAC---TATTATGAAAC---A-T-GAAAAACA---T--TCAG-T----TGA-GA------AC-CTAAACTT-TTT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCAC-CGATATTGAAAAATTTA--------A-------TT---C---AAA-------------AT-GCGGACAGCAAC-C-GGAGTAAACAAAG----------GT------C---------ATG---TG--AAAGTTGTGTTA-TTTAAAATCTGTTTAATTTGTGTTAT-GAATA-AA----GACAAGAAGAG-A-AAATTATT-GCTTACCCATGAAGTT-C--AGAAATATTCCTTTCCTTGACTGACCACA-AATA-C-AAGTGCT---TGCAAATGACTTTTGA-G-AA---A--C--ATTGAAAA-TCTTAGAAG-CACTT-GTCTTTTACT-TGTACAAA-------A----AA-GGTT-AT-AT-CTACTCAA-TACA--ATATTTGATGTTGTTGTTCG--AAGAATTTGT-GTTGTTTTAG-CTAT--CCGATAATTGGTTTCAATAAGTTC-TAGA-GACTTA-TTTCATAATTAGGAGCA-TGCA-T--TTACAAGG--TAATAAGAA--ATT----GC-AGGGAAAAATCACAGAATTTAATCAAGAGACACCTAACACCT-CAATCTCAACA-AAAGCCAAAC-----TTAAGTTAA-GC--ATGGAG-G-T-TATTCA----GCATCGATCAC-AAAA--CA----AGGAT-CATAAGTATAT-AAT-A--TCGCATATTCAACA-----TTTT-CA-----ATA--TAT-GTCC------C--------C--CTG----------TAA-ATTTAAG--TTTCAATCGTAATAAAGAC---AAAA--ACAA---ATATTGTCTG-GTGCTTACTGTCTG---TTTTAATACTTTGTAATCATATGAATTAAAA-TCTGATAAAAA-TTAAATCAAGTGGTAGACAT-GG--GGTT--TTGTGGTAAATT----AACAGCCCTGTAACTCAT
gi|4 : atATCCAAAC----TATT-G-CAAATCCATCACAATTGATCTTAGATCAATTA-TT----TGTC--CCTATAAGAGAGTACCT------GTT-T-T--TACTATAG--CGA-T-AACTGG--AG-T--------GACGTG-A-TT--AAA-C-TAT--TA-T--A-ACT-ATT-T-----------------AATA-A---A-GTT--GGACCCCTGAC--CTG-AAAGAGC--AT--TAA--T-TT--CTACA-AAA-----GA-TGA-TAG-A--T-T--GTA--TTTC--AGTTCGG--AAAAATG-A--TT-TATTTC--------TTCAAAATTCA---TTTGAAAA-AT-AG-T-TGTA-TAC-G-TCCAAT-G-ATTAACATATG-TAA-ATT--A------ACGAGC-A-T--G-TGGTGAA----TTTTCGGCA-TTTTGC--G------TGT-ATAAAAAC-GTA-TTTTTGAACCT-TTT-TTCA---T--ATTCCTGGAAAA--ATGTTG----AA-CA-TCTAGT------GTAAA---AGT-AAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAA--ACA-T--TCAG-T----TCA-GA------TC-CTA----C-TTTTATTGCTTCAAAATCGTCTTGAAAAT-TAC--GAATTTTTAC-CAATATTGA-------A--------ACAT----TT---CGGCAAA-------------ATGGCGGAT-GCAAG-AGGGAGTAAACAAAGCG---------T------C---------ATG---TG--GTATTTGCGTTCTTTTAAAATCTGTTT-----GTGTTAT-GAATA-AAGAC----AAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATG-TCCTTTCCTTGACTGACCACA-AATA-C-AACTGCT---TGCAAATGACTTTTGG-GCAA---A-CC--ATTGAAAAT-CTTAGAAGCCA-TT-GTATTTTACT-TGTACAAA------CATTTTA---GTT-TATAT-CTACTCAA-TATA--TCATTTGA-TGTGTTGTT-GG-AAGAATTTGT-GTAGTTTTAG-CTATATCCGATAATTGGTTTGAATAAGATC-TAGA---CCCA-TTTCATAATTAGGAGCA-TGCATA--T------G--TAATAAGAA--ATTG---GC-AGGGAAAAA-CAAAGAATTTAAC--AGTGACACCTAACATCT-CAGTTATAACA-AAAGCC--ACG----TTCAGTTAA-GC--ATGAAA-G-TGTATTCAT----CATC-ATCAC-AAAAT-CAT--GAGGAT-AATAAATATATCAATAA--TCGCATATTCAACATAT-TTTTT-CA-----ACA--TATAATCCCATCCTC--------C--CTA----------TAAGATTTAAG--TTT-CATCGTAATAAAGAC---
gi|5 : TATCCCA-CACTTTATTTG-CGG--CCATCA-G--TT--CGT-GAT--ATTA-TC--------AA---ATAA-ATGGAACCT----------T-T--TACTATAGGTCGACT-AACCGGGGA--T--------G-T-TG-A-TT--AAC-C-AAT--TA-T--A-ACTAGTT-TTCA--GCATTTATATAGAATACA---ATGTT--GGACCCA-GAC--AAG-AAAGAGC--AT---AA--T-TTATCTACA-AAA-----GAATGA-TATTA--TCT--TTA--TTTTCGAGTCCGG--AGAA-T--A--TTACATTGC--------TTCAAAATCTCATCTATGAATA-AG-AG-TGTGTA--A--G-TTCAAT-GTATTATCGT--GATAT-ATTTAAC-----ACGAAC-A-T--A-CGGTGAA----TTT-CGGCA-GTTTGGTAG------TTT-ATAAAAAC-TTA-TTTATCATCAC-TTT-TTCA---T--ATT-CTGGAAAATTAAGTTG----GAACAATCTA-T------GTAAA----GTTAAAACTATC-CAAAC---TA-TATAATACTGAA-C-AAAAC--A---T--TCAG-TACATTAA-GA------ACTCTT----T-TTG-ATTGCT-CAAAATCTCCTTGAAAATCTAATTGAATTT-CAC-C-ATATTGA-------ATAAACATGA-------TTTATC---AAATATGAGCGAATGTATGGCGGAC-GCAAC-CGGGAGTAAACAAAACG---------T------C---------ATG---TGTGAAAGTTGTGTTATTTTAAAATCTGTTTAA-TTGTGTTAT-GAATA-AAGAC----AAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATA-ACCTCTCCTTGACGGACCACA-AATA-C-AAGTGCT---TGCAAATGACTTTTGG-GC-A---AACCATATTGAAAA-TCTTAGAAGCCA-TT-GTCTTTTACT-TGTACAAAT-----CA----A
gi|5 : a----AA-GGTT-TA--T-CTACTCAA-TAAT--TCAATTGA-TGTGTTGGG-GGAAAGAATTTGT-tttnnnnnnnnnnnnnnnnnnnnnnnnncaaacaaggtttatctactcaataattcaattgatgtgttgggggaaagaatttgtagagt
gi|6 : atatcccacactttatttgcggccatcagttcgtgatattatcaaataaatggaaccttttactataggtcgactaaccggggatgttgattaaccaattataactagttttcagcatttatatagaatacaatgttggacccagacaagaaagagcataatttatctacaaaagaatgatattatctttattttcgagtccggagaatattacattgcttcaaaatctcatctatgaataagagtgtgtaagttcaatgtattatcgtgatatatttaacacgaacatacggtgaatttcggcagtttggtagtttataaaaacttatttatcatcactttttcatattctggaaaattaagttggaacaatctatgtaaagttaaaactatccaaactatataatactgaacaaaacattcagtacattaagaactctttttgattgctcaaaatctccttgaaaatctaattgaatttcaccatattgaataaacatgatttatcaaatatgagcgaatgtatggcggacgcaaccgggagtaaacaaaacgtcatgtgtgaaagttgtgttattttaaaatctgtttaattgtgttatgaataaagacaagaagagaaaatcattgcttacccatgaagttcagaaataacctctccttgacggaccacaaatacaagtgcttgcaaatgacttttgggcaaaccatattgaaaatcttagaagccattgtcttttacttgtacaaatcaatttnnnnnnnnnnnnnnnnnnnnnnnnncaaac---AACC--ATTGAAAAT-CTTAGAAGCCA-TT-GTTCTTTACT-TGTACAAA------CA----AA-GGTA-TATAT-CTACTCAA-TATA--TCATTTGA-TGTGTTGTT-GG-AAGAATTTGT-GTTGCTTTAG-CTAT--CTGATAATAGGTTTGAATAA-----------------TTTCATAATTAGGAGCA-TGCATT--C------G--TACTAAGAA--TTTGTCAGCTAGGGAAAA--CACGGAATTTAAC--AGTGACACCTAACACC-----------CA-GA--CCG-ACG----TTAAGTTAATGCCAATGGAAAG-T-TATTCATCATGCAT---TCAC-AAAAT-CAT--GAGGATTCATAAGTGTA-CAATAA--TCACATATTCAACATATGTTTTTGCAG----ACA--TATGATTC------C--------CGCCTG----------TAAGATTTAAG--TTTC-ATCGCATTCAAGAC---AAAAAATAAA---ATATTGTGCT-GTTT-TTCT-TCTG---TTTTAATACTTTGTAATCATATGAATTAAAA-TCTGATAAAAT-T-AAATCAAGGTGT-GA-ATGGG--GGTT--TTATGGTAAATT----AACATCCCTGTAACTCATTACTT---CCCTATTagagt
gi|6 : -TTAAATCAAGGTGT-GA-ATGGG--GTTT--TTAAGGTAAATT----AACATCCCTGTAATTCATTATTT---CCCTACTGTCACCA--AA-ATATCTCGCGTATTTAATTCATCTG--ATACGAACTACCTTT--A-GTCAACAA--GGATAGTCTCATTTAA--T-TGTCAAAACAGAGTTATAG-AACCGAATTAT--GACC-GAAGTAGTTGGATAaaatcaaggtgtgaatggggtttttaaggtaaattaacatccctgtaattcattatttccctactgtcaccaaaatatctcgcgtatttaattcatctgatacgaactacctttagtcaacaaggatagtctcatttaattgtcaaaacagagttatagaaccgaattatgaccgaagtagttggata
gi|7 : aaccattgaaaatcttagaagccattgttctttacttgtacaaacaaaggtatatatctactcaatatatcatttgatgtgttgttggaagaatttgtgttgctttagctatctgataataggtttgaataatttcataattaggagcatgcattcgtactaagaatttgtcagctagggaaaacacggaatttaacagtgacacctaacacccagaccgacgttaagttaatgccaatggaaagttattcatcatgcattcacaaaatcatgaggattcataagtgtacaataatcacatattcaacatatgtttttgcagacatatgattcccgcctgtaagatttaagtttcatcgcattcaagacaaaaaataaaatattgtgctgtttttcttctgttttaatactttgtaatcatatgaattaaaatctgataaaattaaatcaaggtgtgaatgggggttttatggtaaattaacatccctgtaactcattacttcccta-G-CGG--TCATCACG--TGA-CTT-CAGCGATTA-TT----TGTTTACCTATCA-AGAGTACCT------GTA-T-T--TACTATAGG-CGA-T-AACGGGG-AG-T--------G-TGTA-A-TT--AAA-C-CAT--TA-T--A-ACT-TTT-TTCA-TATATT-ATATAGAAAA-A---A-GTT--GGACCCCTGAC--CCG-AAAGAGC--AT--TAAT-T-T---CTACA-AAA-----GA-TAA-TAT-A--T-T--TTA--TTTC--AGTTCGGAAAAAAAAG-A--TT-TATTGCTTCAAAA-TTCA----------TTTGAAAA-AT-AG-TGTTTA-TAC-G-TCTAAT-T-TTTAGTGT--G-TAA-ATA--A------ACAAAC-ATT--T-TGGTGAA----TTTTCGGCATTTTTGC--G------TGT-AATAAAAC-GTATTTTTTCAACCTATTT-TTCA---TACATATCTGGAAAA--AAGTTG----GA-CA-TCTAGT------GTAAA---AGTTAAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAATCA---T--TCAG-T----TCA-GA------AC-CAA----CTTTT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCAC-AGATATTGA-------AAC------A-------TT---C---AAA-------------ATGGCGGAC-GCAACAAGGGAGTAAACAAAGCGATTA--GCGTCATTACC---------ATG---TG--AAAGTTGCGTTATTTTAAAATCT
gi|8 : taGC--A------TGT-ATAAAAAT-GTA-ATTTTCAACCT-TTT-TACA---T--ATTTCTAGAAAA--CTTTTG----GA-CA-TCTAGTATAAGTGTAAA---AGTTAAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAA--AGTAT--TCAG-T----TCA-GA------AC-CTA----C-TTTTCTTGCTTCAAAATT------AAAA--------AATTTTCAC-CGATATTGA-------A--------ACTTAT--TT---C---AAA-------------GTGGTGGAT-GCAAG-CGGGAGTAAACAA-GC----ATTGCAT------TTAATTTTGTATA---TG--TATGTAGTGCTATTTTAAAATCTGTTT-----GTGTTAT-GAATA-AAGAC----AAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATA-TCCTTCCCTTGACTGACCACA-AATA-C-AAGTGCT---TGTGAATGGCTTTTAG-GC-A---AATC--ATTGAAAA-GCTTAGAAGCCA-TT-GTCTTTTACT-TGTACAAA------CA----AA-GGT-----------------TATA--TCAC---A-GTTGTTG---G--AAGAATTGGT-GTTGTGTTAG-CTA
gi|9 : tatgTATCCAC-C----TTAT-G-TG---CCATCACG---GA-TTT-GATCAATTAATTGGTGTGTTGACCTATTA-AG-GTACCT------GTA-T-TATTACTATAGG-CCA-TCAACGGCGGAG-T--------G-TGTGCA-TTGAAAA-CATAT--TC-TCTA-ACG-TTT-TTCA-TGCATT-TAATAGAATA-AGGGA-GTTA-GGCCCCCTGATAGCTG--ACGAGTCGATTCTAA--T-T---TCATA-AAACATGGAA-TGA-TAT-A--T-TTCTTA--TTT---AG---GG--AAAATTG-AATTT-TATTGCTATGTAAATTCT----------CTTGAAAACATCAGTTGTGTATTACTG-TTCAATCG-ATAAACGT--G-TAAGAAT--A------ATGAGCAA-TGAT-TGGTGAATCTGTTTTCGG-A--TTTGC--GGTCTTCTGTCATAAAAAC-ATG--TTTGCACTGT-TTT-ATTG---T--TTTTTTGG--AA--AAGTT--------CA-TCTAGT------GTAAA---attgg
Alignments
lowQualScore : 1111 11111 111111 1111111111111 11 1111111 11111 11 11 111 11111 5555555555555555555555 111111 1111 111111111 11 111111 111111 1111 111111 111111 11 6666666666666666666666 111 3333333333333 666666666666666666666666666666 111 111 22222 111 222222 11 11 1 111111 111111 222 11 111 222222222222 11 111 11 222222222 11 22222222222 111 1111 1111 22222 11 5555555555555555555555555555555 11 111 333333333 2222 1 1 2222 1 1 11 11 1111 111 11 1 11 1111111 11 11111111 11
lowQualScore : 6 4444 5 5 77 777 55 5 666 4 11111 66 4 777777 4 4 66 4 4 4 7777777777777 4 4 4 11 4 4 55 4 66 4 4 4 4 0000000 77777 4 00 66 4 66 888 00 4 222 4 11111 4 4 4 55 4 55 55 55 55 0 66 55 4 7777777777777777777777 4444 4 8 55 8 11 4 4 1 55 4 4 66 777777 4 4 1111 9999 55 666666666 4 4 22 4 4 666 55 55 0 7777 3 3 3 000000 3 777 1 4 4 4 777 4 777 4 4 777777 66 3333 4 222222 4 777777 00 1 5 77 5 6666666666666666666666 77 000 1111111111111 5 777 777777777777777777777777777777 77 000 1 333 6 6 88888 6 6 6 6 99 6 3 6 6 6 111 5 111111 5 33 88 2 7 5 5 999999 9999 5 888888 5 5 77 3 222 0 5 5 6 11 0 0 11 1 8 555 1 8 8 0 666666666666 0 11 444 3 8 0 11 1 9999 1 8 0 666666666 8 11 8 8 8 55555555555 8 88 111 8 3 0 2222 0 0000 8 88888 11 3 2222222222222222222222222222222 3 11 88 6 0 444 222222222 3333 0 1 0 0000 3 3 0 8 8 8 6 11 11 1 3 7777 5 777 6 33 0 0 0 11 0 5 6666666 1 11 66666666 6 8 1 11 8
lowQualScore : . .... . . .. ... .. . ... . ..... .. . ...... . . .. . . . ............. . . . .. . . .. . .. . . . . ....... ..... . .. .. . .. ... .. . ... . ..... . . . .. . .. .. .. .. . .. .. . ...................... .... . . .. . .. . . . .. . . .. ...... . . .... .... .. ......... . . .. . . ... .. .. . .... . . . ...... . ... . . . . ... . ... . . ...... .. .... . ...... . ...... .. . . .. . ...................... .. ... ............. . ... .............................. .. ... . ... . . ..... . . . . .. . . . . . ... . ...... . .. .. . . . . ...... .... . ...... . . .. . ... . . . . .. . . .. . . ... . . . . ............ . .. ... . . . .. . .... . . . ......... . .. . . . ........... . .. ... . . . .... . .... . ..... .. . ............................... . .. .. . . ... ......... .... . . . .... . . . . . . . .. .. . . .... . ... . .. . . . .. . . ....... . .. ........ . . . .. .
lowQualScore : 7 2222 7 7 99 000 22 0 888 4 33333 11 4 222222 4 4 11 0 0 0 6666666666666 0 0 0 00 0 0 55 4 11 4 4 4 4 3333333 77777 4 66 11 4 11 000 66 4 222 4 11111 4 4 4 55 0 55 55 55 55 5 55 55 0 2222222222222222222222 5555 0 0 66 0 00 0 0 4 55 0 4 11 222222 4 4 6666 4444 11 000000000 4 4 11 4 0 444 00 00 3 7777 6 6 6 555555 2 000 9 4 4 4 888 4 888 4 4 111111 11 9999 4 888888 4 444444 77 4 7 99 7 3333333333333333333333 99 000 4444444444444 7 111 999999999999999999999999999999 99 000 4 000 7 7 33333 7 7 7 7 22 7 2 7 7 7 777 7 555555 1 88 66 5 0 0 0 444444 4444 0 444444 0 0 99 9 666 7 7 7 7 00 8 8 66 0 0 666 4 0 0 8 444444444444 8 00 000 8 0 8 00 4 4444 0 0 8 888888888 0 00 0 0 0 00000000000 0 88 888 0 8 8 6666 8 2222 0 00000 00 8 2222222222222222222222222222222 2 00 22 0 8 000 555555555 2222 0 0 0 8888 2 2 0 0 8 0 0 00 00 4 8 0000 6 555 7 88 0 8 8 00 8 0 2222222 0 00 88888888 7 0 0 00 0
consensus : TATCCAA-C----TATT-G-CGG--CCATCACG--TGA-CTT-GATCGATTA-TT----TGTTNACCTATTA-AGAGTACCT------GTA-T-T--TACTATAGG-CGA-T-AACGGGGGAG-T--------G-TGTG-A-TT--AAA-C-TAT--TA-T--A-ACT-TTT-TTCA-TGCATT-ATATAGAATA-A---A-GTT--GGACCCCTGAC--CTG-AAAGAGC--AT--TAA--T-T---CTACA-AAA-----GA-TGA-TAT-A--T-T--TTA--TTTC--AGTTCGG--AGAAATG-A--TT-TATTGC--------TTCA----------TTTGAAAA-AT-AG-TGTGTA-TAC-G-TTCAAT-G-ATTAGCGT--G-TAA-ATT--A------ACGAGC-A-T--N-CGGTGAA----TTTTCGGCA-TTTTGC--G------TGT-ATAAAAAC-GTA-TTTTTCAACCT-TTT-TTCA---T--ATTTCTGGAAAA--AAGTTG----G-A-C-ATCTAGT------GTAAA---AGTTAAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAA--A---T--TCAG----TTCA-GA------AC-CTA----C-TTT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCAC-CGATATTG--AA--------A----T----T--TC---AAA-------------ATGGCGGAC-GCAAC-CGGGAGTAAACAAAGCG---A--GCGT------C---------A--TG---TGAAAGTTGCGTTATTTTAAAATCTGTTTAA-TTGTGTTAT-GAATA-AAGAC-GACAAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATA-TCCTTTCCTTGACTGACCACA-AATA-C-AAGTGCT---TGCAAATGACTTTTGG-GCAA---AACC--ATTGAAAATTCTTAGAAGCCACTT-GTCTTTTACT-TGTACAAA------CA----AA-GGTT-TA-AT-CTACTCAA-TATA--TCATTTGA-TNTGTTGTTGG-AAGAATTTGT-GTTGTTTTAG-CTAT--CCGATAATTGGTTTGAATAAGATC-TAGAGGACCTA-TTTCATAATTAGGAGCA-TGCATT--TTACAA-G--TAATAAGAA--ATTGGCAG---GGAAAAA-CACAGAATTTAAC--AGTGACACCTAACACCT-CAATTTCAACA-AAAGCC--ACG----TTAAGTTAA-GC--ATGGAG-G-T-TATTCAT---GCATC-ATCAC-AAAAT-CAT--GAGGAT-CATAAGTATATCAATAA--TCGCATATTCAACATAT-TTTTT-CA-----ACA--TATAATCC------C--------C--CTG----------TAAGATTTAAG--TTTCCATCGTAATAAAGAC---AAAA--CAAA---ATATTGTGCC-GTGC-TNCT-TCTG---TTTTAATACTTTGTAATCATATGAATTAAAA-TCTGATAAAAT-TNAAATCAAGGTGT-GA-ATGGG--GGTT--TTAAGGTAAATT----AACATCCCTGTAACTCATTACTT---CCCTACTGTCACCA--AA-ATATCTCGCGTATTTAATTCATCTG--ATACGAACTACCGTT--A-GTCAACAA--GGATAGTCTC-----A--T-TGTCAAAACAGAGTTATCG-GACCNAATTAT--GACC-GAAATAGTTGGATA
Reference ( family-1174 ) : TATCCAA-C----TATT-G-CGG--CCATCACG--TGA-CTT-GATCGATTA-TT----TGTTNACCTATTA-AGAGTACCT------GTA-T-T--TACTATAGG-CGA-T-AACGGGGGAG-T--------G-TGTG-A-TT--AAA-C-TAT--TA-T--A-ACT-TTT-TTCA-TGCATT-ATATAGAATA-A---A-GTT--GGACCCCTGAC--CTG-AAAGAGC--AT--TAA--T-T---CTACA-AAA-----GA-TGA-TAT-A--T-T--TTA--TTTC--AGTTCGG--AGAAATG-A--TT-TATTGC--------TTCA----------TTTGAAAA-AT-AG-TGTGTA-TAC-G-TTCAAT-G-ATTAGCGT--G-TAA-ATT--A------ACGAGC-A-T--N-CGGTGAA----TTTTCGGCA-TTTTGC--G------TGT-ATAAAAAC-GTA-TTTTTCAACCT-TTT-TTCA---T--ATTTCTGGAAAA--AAGTTG----G-A-C-ATCTAGT------GTAAA---AGTTAAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAA--A---T--TCAG----TTCA-GA------AC-CTA----C-TTT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCAC-CGATATTG--AA--------A----T----T--TC---AAA-------------ATGGCGGAC-GCAAC-CGGGAGTAAACAAAGCG---A--GCGT------C---------A--TG---TGAAAGTTGCGTTATTTTAAAATCTGTTTAA-TTGTGTTAT-GAATA-AAGAC-GACAAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATA-TCCTTTCCTTGACTGACCACA-AATA-C-AAGTGCT---TGCAAATGACTTTTGG-GCAA---AACC--ATTGAAAATTCTTAGAAGCCACTT-GTCTTTTACT-TGTACAAA------CA----AA-GGTT-TA-AT-CTACTCAA-TATA--TCATTTGA-NTTGTTGTTGG-AAGAATTTGT-GTTGTTTTAG-CTAT--CCGATAATTGGTTTGAATAAGATC-TAGAGGACCTA-TTTCATAATTAGGAGCA-TGCATT--TTACAA-G--TAATAAGAA--ATTGGCAG---GGAAAAA-CACAGAATTTAAC--AGTGACACCTAACACCT-CAATTTCAACA-AAAGCC--ACG----TTAAGTTAA-GC--ATGGAG-G-T-TATTCAT---GCATC-ATCAC-AAAAT-CAT--GAGGAT-CATAAGTATATCAATAA--TCGCATATTCAACATAT-TTTTT-CA-----ACA--TATAATCC------C--------C--CTG----------TAAGATTTAAG--TTTCCATCGTAATAAAGAC---AAAA--CAAA---ATATTGTGCC-GTGC-TNCT-TCTG---TTTTAATACTTTGTAATCATATGAATTAAAA-TCTGATAAAAT-TNAAATCAAGGTGT-GA-ATGGG--GGTT--TTAAGGTAAATT----AACATCCCTGTAACTCATTACTT---CCCTACTGTCACCA--AA-ATATCTCGCGTATTTAATTCATCTG--ATACGAACTACCGTT--A-GTCAACAA--GGATAGTCTC-----A--T-TGTCAAAACAGAGTTATCG-GACCNAATTAT--GACC-GAAATAGTTGGATA
gi|1 : TATCCAA-C----TATT-GTCGG--TCATCACG--TGA--TT-GATCAATCA-TT-----GTTACCCTATTA-A-AGTACCTT-----GTA-T-T--TACTATAG--C-A-T-AAACGGGGAGCT--------G-CGTG-AATT--AAAAC-TAT--TAAT--AGACT-TTT-TTCAATGCATT-ATACA-AATA-ATA-A-GTTTAGGACCCCTGAC--CTGGAAAAAGC--AT---AA--T-T---CTACAGAAA-----GA-TGAATCT-GACT-T--TTA--TTCA--GGTTAGG--AGACATG-A--TT-TATTGC--------TTCAAAATTCGC--TTTGAAAA-AT-AG-TGTGTAGTAG-GATTCAAT-G--CTAGCGT--G-TAA-ATT--A------ACGAGC-A-T--TTCGTTGAA----TTTTCGGCA-TTTTGG--A------TGT-ATAAAAACGGTA-TTTTTCAACC--TGT-TTCA---T--ATTTCTGGGAAA--AAG-AG----G-ACC-ATCTAGT------GTAAA---AGTTAAAAC-A-C-TAAATAGATA-TATGAAAC---A-TAGAAAA--A---T--TCAGC---TTCA-GAGAACGCAT-CTA-------TT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--TAATTTTTAC-CGATATTGGAAA--------A----TGATCT--TC---TAA-------------A-GGCGGAC-GCAAC-C-GGAGTAAACAA-------A--ACGT------C---------A--TGATATGACAGTTGTGTTATTTTAAAATCTG-TTAA-TTGTGTTATGGAATA-GAAA--GACAAGAAGAGTACAAATCATTCGCTTACC--TAAGGTTGCGAAGAAATA-ACCTCTCCTTGAC-GACCACAGAATAGCAAAGTGCTAAATGCAA--GAC--TTGGCGCTA---AACCAAATTGAAAATGGCTAGAAG-CGCTTCGTTTTATACTATGATCAAATCAATTTA----AATGGTTATA-ATCCTACTCAAGTACAAGTCA-TTGA--TTGTTGTTGG-AAAA---TGT--TTGTTTTAGCCTAT--TCGAT-ATTCGTTGGAA-AAGATCTTAGAGGACTTATTTTCATAATATGGAGCA-TGCATCGATTACAA-GATCAATAAGAA--ATTGGCAG---GG-AAAA-CACAAA--TTAAC--AGAGACACCTAACACCT-C-ATTTCAACACAAAGTC---CG----TTAAGTTAA-GC--AT-GAG-G-T-TATTCAT----C-----TCACAAAAATACATGCGAGGAT-CAT-AGTATATCAATAAGGGCGC-TATTCAACATAT-TTTTT-CAAATATACATGTATAATCC------CCCCCCCCAC--CTGTAAAACTTGTTAAAATTTAAGGATTTCCTTTGTAATAAAGACTTAAAAA--CAAGCGCATATTGTGCCTGTGC-TACT-TCTGATATTTAAATACTTTGTAA-AATATGAATTAAAATTCTGATAAAATATGATGCAAAGGTGT-TAGATGGGCTGGTTTGTTAA-GTGAGTTATTAAACA-CCCTGTAGCTCATTACTTAAATTCTACTGTCACCAGTAACATTTTTTGCGTA-TTA--TCATCTGATATACGAACTACCGTTTGA-GTCAACAA--GGATAGTCTC-----ATTT-TGTGAAAACAGAGTTATCGAGACCAAATTATGGGACCAAAAATAGTTGGA
gi|10 : aCGTCACG--GGA-CTT-AA-CTATTA-TT----TGT-AACCTAGTG--GACTGTTTCATACAGTT-TAT--TACAATAGG-CGA------GGGGAAG-TTGGGATATG-TGTA-A-TTTTAAA-C-TATACGA-T--A-ACT-TTTCTTCA-TACGTT---------TA------------GGAC-----GC--CTA-AATGA----AT--TAT--T-T---CGACA-AAA-----CA---G-TA--G--T-T--TCC--TTGC----TTCA-----AAAT-----------------------TCA----------TTTGAAAA-GT-AG-TGTATT-TTC-G-TGTAAT-A-ATCTACGT--A-CAA-ATT--ACATTTAACGAGC-A-T--G-TGGTGAT----GTTTGGGGA-TAGAGC--A------TGC-ATAAAAAC-GGA-ATTTTCAACTT-TTTATTCA---T--ACTTCTGGAA-------TTGTTTAG-A-C-ATATAG---------------AG-TAAAAC-A-G-CACAC---TA-TATCAAAC---ATT-AAAAA--A---A--TCAA----TCCATG--------C-CTA----CTTTT-CTTACTTCAAat
gi|11 : TATCCAA-C----TATT-G-CGG--CCATCACG--TGA-TTT-GATGAATTA-TT----TGTTTACCTATTA-AGAGTACTT------GTA-T-T--TACTATAGG-CGA-T-AACGAGGA------------G-TGTG-A-TG--AAA-C-TAT--TT-T--A-ACT-TTT-TTCA-TCCATG-ATATTAAATA-T---A-G-T--GGACCCCTGAC--TTG-AAAGAGC--AT--TAC--TAT---CTACA-AAA-----GA-TGA-TAT-A--T-T--TTA--TTTC--AATTCGG--AAATATG-A--TT-TATTGCTTCAAAA-TTCA----------TTTTAAAA-AG-A---GTGTA-TAC-G-TCCAAT-G-ATTAACGT--G-T
gi|12 : TT-TTCACTGT--ATTTCTGAAAAT--CTTTTG----G-A-C-ATGAAAT------ATATATATAGT----AC-A-CGTA--C---TG-CATGAAAC---A-T-AACAA--A---TAATCAA----TCCA-GG------GC-CTA----C-TTT--TTTCTTCAAAATCATCTT
gi|13 : --AA-ATATCTCGCGTATTTAATTCAACTG--GT--GAACTACCGTT--A-GTCAACAA--GGATAGTCTC-----A--T-TGTCAAAACAGAGTTATCG-AACCTAATTAT--GACC-GAAATAGTTGGAT
gi|14 : --T-T--TTA--TTTC--AGTTAGG--AGAAATG-A--TT-TATTGC--------TTCA----------
gi|15 : --------TTCA----------TTTGAAAA-GC-AG-TGATTA-CAC-G-TGAAAT-G-ATCAGAGT--A-TAA-ATT--A------ACAAGC-A-T--G-CGGTG-A----TTTTaaattccnnnnnnnnnnnnnnnnnnnnnnnnnaatccactaggcgtaaat
gi|16 : ttttttgcttcaaaaATGACTTTTGG-GCAATATAGTC--ATTGAAA-TTCTTAGACGCCACT--GTCTTTTATC-TGTACAAA------CA----AA-GGTT-AT-AT-CTACTCAA-att
gi|17 : TATCTCGCGTATTTAATTCATCTG--ATACGAA-----GTT--ACG--AACTACCGTATAGTCTC-----A--T-TGTCAAA
gi|18 : GG-CGA-T-AACGGGG-AG-T--------G-TGTA-A-TT--AAA-C-TAT--
gi|19 : tatgtatcacgaaatctgactatttgaatcgtTCTT-----A--TATTTGAAAACAGAGTTATCG-GACCAAATTAT--GACC-AAAATAGTTGGATA
gi|2 : acTATCCAA-C----TATA-G-CGG--TCATTACG--TGA-CTT-AAGCGATTA-TT----TGTTTACCTATTA-AGAGTACCT------GTAAT-T--TACTATAGG-CG--T-AACGGGGGAG-T--------G-TGT--A-TT--AAA-C-CAT--TA-T--A-ACT-TTT-TTCA-TGCATT-AT-TAGAA-A-A---A-GTT--GGACCCCTGAC--CCG-AAAGAGC--AT--TAA--T-T---CTACA-AAA-----GA-TGA-TAT-A--T-T--TTA--TTTC--AGTTCGA--AAAAA---A--TT-TATTGC--------TTCA----------TTTGAAAA-AT-AG-TGTTTA-TAT-G-TT-AAT-G-ATTAGCGT--G-TAA--TT--A------ACGAGC-A-T--T-TGGTGAA----TTTTCGGCA-TTTTGC--A------TGT-ATAGAA-C-GTA-TTTTTCAACCT-TTT-TTCA---T--GTATCTGGAAAA--AAGTTG----G-A-C-ATCTAGA------GTAAA---AGTTAAAAC-A-T-TAAAC---TA-TATGAAAC---A-T-GAAAA--A---T--TCAG----TTCA-GA------AC-A-A----C-TTT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCACGCGATA-------------------------T--TC---AAA-------------ATGGCGGAC-GCCAC-CGGGAGTAAACAAAGCGCTTA--GCGT------C---------A--TG---TGAATGTTGTGTTATTAT-AAATATGTTTAA-TTGTGTTAT-GAATACAAGACTGACAAGAA-AG-A-AAATCATT-GCTTA-CCATGAAGTT-C--AGAAATG-TCCTTTCCTTGACTGACCATA-AATA-C--AGTGCT---TGCAAATGACTTTTGG-G-AATATAATC--ATTGGAAATTCTTAGAAGCCATTT-GTCTTTTATT-TGTACAAA------CA----AA-GGTT-TG-AT-CTACTCAA-TATA--TCATTTGG-GTTATTGTT-G-AAGAATTTGTGGTTGTTTTAG-CTAT--CCGATAATTGG-TTGAAT-CGATC-TAGAGGACCTA-TTTCATAATTATGAGCATTGCATT--TTACAA-G--TAAT-AGAATGATTGGCA----GGAAAAA-CACAGAATTTAAC--AGTGACACCTAA-ACCTCCAATTTCAACA-AAAGCC--ACGTTAATTAAGTTAA-GC--ATGGAG-GTT-TATTCAT---GCATC-ATCAC-AAAAT-CAT--GAGGAT-CATGAGTATATCAAT-A--TCGCATATTCAACAT-T-TTTTT-CA-----ACA--TGCAATTC------C--------C--CTG----------TAAGATTTAAG--TTTTCATTGTA--AAAG-C---AAAA--C--A---ATATTGT--T-GTGC-TCTT-TCTG----TTTAATACTTTGTAATCATATGAA-TAAAA-TCTGATCAAAT-TAAAATCAAGGTGT-GA-ATGGG--GATT--TTAAGGT-AATT----AACATCCCTGTAACTCATAACTT---CCCTACTGTCA-CA--AA-ATATCTCGCGTATTTAATTCATCTG--ATACGAACTA-CGT-----------------ATAGTCTC-----A--T-TGTCAAAACAGAGTTATCG-GACCTAATTAT--GACC-GAAATAGTTGGATA
gi|20 : A---T--GTATCTGGAAAA--AAGTTG----G-A-C-ATCTAGT------G
gi|3 : -TT----TGTTCTCCTATTA-AGAGTACCT------GTA-T-T--TACTATAGG-CGA-T-AACGGGGAA--T--------G-TGTG-A-TT--AAA-C-TAT--TA-T--A-ACT-TTT-TTCA-TGCATT-ATATACAATA-A---A-GTT--GGACCCCTGAC--CTG-AAAGAAC--AT--TAAATT-T---CTACA-AAA-----GA-TG---AT-A--T-T--TTAAGTTTC--AGTTCGG--AG-AATGAA--TT-TATTGCTCAAAA--TTTA----------TTTGAAAA-TA-AG-TGTGTA-TAG-GTTTCAAT-G-ATTATCGT--G-TAA-ATT--A------ACGAAC-A-T--A-CGGTGAA----TTTTCGGCA-TTTTGA--G------TGT-ATAAAAAC-GTA--TTTTCAACCT-TTT-TTCA---T--ATTTCTGGAAAA--AAGTTG----G-A-C-ATCTAGT------GT-AA---AGTTAAAAC-A-C-CAAAC---TATTATGAAAC---A-T-GAAAAACA---T--TCAG----TTGA-GA------AC-CTAAACTT-TTT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCAC-CGATATTGAAAA--------A----TTTAAT--TC---AAA-------------AT-GCGGACAGCAAC-C-GGAGTAAACAAAG----------GT------C---------A--TG---TGAAAGTTGTGTTA-TTTAAAATCTGTTTAATTTGTGTTAT-GAATA-AA----GACAAGAAGAG-A-AAATTATT-GCTTACCCATGAAGTT-C--AGAAATATTCCTTTCCTTGACTGACCACA-AATA-C-AAGTGCT---TGCAAATGACTTTTGA-G-AA---A--C--ATTGAAAA-TCTTAGAAG-CACTT-GTCTTTTACT-TGTACAAA-------A----AA-GGTT-AT-AT-CTACTCAA-TACA--ATATTTGATGTTGTTGTTCG-AAGAATTTGT-GTTGTTTTAG-CTAT--CCGATAATTGGTTTCAATAAGTTC-TAGA-GACTTA-TTTCATAATTAGGAGCA-TGCA-T--TTACAAGG--TAATAAGAA--ATT-GCAG---GGAAAAATCACAGAATTTAATCAAGAGACACCTAACACCT-CAATCTCAACA-AAAGCCAAAC-----TTAAGTTAA-GC--ATGGAG-G-T-TATTCA----GCATCGATCAC-AAAA--CA----AGGAT-CATAAGTATAT-AAT-A--TCGCATATTCAACA-----TTTT-CA-----ATA--TAT-GTCC------C--------C--CTG----------TAA-ATTTAAG--TTTCAATCGTAATAAAGAC---AAAA--ACAA---ATATTGTCTG-GTGCTTACTGTCTG---TTTTAATACTTTGTAATCATATGAATTAAAA-TCTGATAAAAA-TTAAATCAAGTGGTAGACAT-GG--GGTT--TTGTGGTAAATT----AACAGCCCTGTAACTCAT
gi|4 : atATCCAAAC----TATT-G-CAAATCCATCACAATTGATCTTAGATCAATTA-TT----TGTC--CCTATAAGAGAGTACCT------GTT-T-T--TACTATAG--CGA-T-AACTGG--AG-T--------GACGTG-A-TT--AAA-C-TAT--TA-T--A-ACT-ATT-T-----------------AATA-A---A-GTT--GGACCCCTGAC--CTG-AAAGAGC--AT--TAA--T-TT--CTACA-AAA-----GA-TGA-TAG-A--T-T--GTA--TTTC--AGTTCGG--AAAAATG-A--TT-TATTTC--------TTCAAAATTCA---TTTGAAAA-AT-AG-T-TGTA-TAC-G-TCCAAT-G-ATTAACATATG-TAA-ATT--A------ACGAGC-A-T--G-TGGTGAA----TTTTCGGCA-TTTTGC--G------TGT-ATAAAAAC-GTA-TTTTTGAACCT-TTT-TTCA---T--ATTCCTGGAAAA--ATGTTG----A-A-C-ATCTAGT------GTAAA---AGT-AAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAA--ACA-T--TCAG----TTCA-GA------TC-CTA----C-TTTTATTGCTTCAAAATCGTCTTGAAAAT-TAC--GAATTTTTAC-CAATATTG--AA--------ACA--T----T--TCGGCAAA-------------ATGGCGGAT-GCAAG-AGGGAGTAAACAAAGCG---------T------C---------A--TG---TGGTATTTGCGTTCTTTTAAAATCTGTTT-----GTGTTAT-GAATA-AAGAC----AAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATG-TCCTTTCCTTGACTGACCACA-AATA-C-AACTGCT---TGCAAATGACTTTTGG-GCAA---A-CC--ATTGAAAAT-CTTAGAAGCCA-TT-GTATTTTACT-TGTACAAA------CATTTTA---GTT-TATAT-CTACTCAA-TATA--TCATTTGA-TGTGTTGTTGG-AAGAATTTGT-GTAGTTTTAG-CTATATCCGATAATTGGTTTGAATAAGATC-TAGA---CCCA-TTTCATAATTAGGAGCA-TGCATA--T------G--TAATAAGAA--ATTGGCAG---GGAAAAA-CAAAGAATTTAAC--AGTGACACCTAACATCT-CAGTTATAACA-AAAGCC--ACG----TTCAGTTAA-GC--ATGAAA-G-TGTATTCAT----CATC-ATCAC-AAAAT-CAT--GAGGAT-AATAAATATATCAATAA--TCGCATATTCAACATAT-TTTTT-CA-----ACA--TATAATCCCATCCTC--------C--CTA----------TAAGATTTAAG--TTT-CATCGTAATAAAGAC---
gi|5 : TATCCCA-CACTTTATTTG-CGG--CCATCA-G--TT--CGT-GAT--ATTA-TC--------AA---ATAA-ATGGAACCT----------T-T--TACTATAGGTCGACT-AACCGGGGA--T--------G-T-TG-A-TT--AAC-C-AAT--TA-T--A-ACTAGTT-TTCA--GCATTTATATAGAATACA---ATGTT--GGACCCA-GAC--AAG-AAAGAGC--AT---AA--T-TTATCTACA-AAA-----GAATGA-TATTA--TCT--TTA--TTTTCGAGTCCGG--AGAA-T--A--TTACATTGC--------TTCAAAATCTCATCTATGAATA-AG-AG-TGTGTA--A--G-TTCAAT-GTATTATCGT--GATAT-ATTTAAC-----ACGAAC-A-T--A-CGGTGAA----TTT-CGGCA-GTTTGGTAG------TTT-ATAAAAAC-TTA-TTTATCATCAC-TTT-TTCA---T--A-TTCTGGAAAATTAAGTTG----GAA-CAATCTA-T------GT-AA---AGTTAAAACTATC-CAAAC---TA-TATAATACTGAA-C-AAAAC--A---T--TCAGTACATTAA-GA------ACTCTT----T-TTG-ATTGC-TCAAAATCTCCTTGAAAATCTAATTGAA-TTTCAC-C-ATATTG--AATAAACATGA----T----TTATC---AAATATGAGCGAATGTATGGCGGAC-GCAAC-CGGGAGTAAACAA-------A--ACGT------C---------ATGTG---TGAAAGTTGTGTTATTTTAAAATCTGTTTAA-TTGTGTTAT-GAATA-AA----GACAAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATA-ACCTCTCCTTGACGGACCACA-AATA-C-AAGTGCT---TGCAAATGACTTTTGG-GC-A---AACCATATTGAAAA-TCTTAGAAGCCA-TT-GTCTTTTACT-TGTACAAAT-----CA----A
gi|5 : a----AA-GGTT-TA--T-CTACTCAA-TAAT--TCAATTGA-TGTGTTGGGGGAAAGAATTTGT-tttnnnnnnnnnnnnnnnnnnnnnnnnncaaacaaggtttatctactcaataattcaattgatgtgttgggggaaagaatttgtagagt
gi|6 : atatcccacactttatttgcggccatcagttcgtgatattatcaaataaatggaaccttttactataggtcgactaaccggggatgttgattaaccaattataactagttttcagcatttatatagaatacaatgttggacccagacaagaaagagcataatttatctacaaaagaatgatattatctttattttcgagtccggagaatattacattgcttcaaaatctcatctatgaataagagtgtgtaagttcaatgtattatcgtgatatatttaacacgaacatacggtgaatttcggcagtttggtagtttataaaaacttatttatcatcactttttcatattctggaaaattaagttggaacaatctatgtaaagttaaaactatccaaactatataatactgaacaaaacattcagtacattaagaactctttttgattgctcaaaatctccttgaaaatctaattgaatttcaccatattgaataaacatgatttatcaaatatgagcgaatgtatggcggacgcaaccgggagtaaacaaaacgtcatgtgtgaaagttgtgttattttaaaatctgtttaattgtgttatgaataaagacaagaagagaaaatcattgcttacccatgaagttcagaaataacctctccttgacggaccacaaatacaagtgcttgcaaatgacttttgggcaaaccatattgaaaatcttagaagccattgtcttttacttgtacaaatcaatttnnnnnnnnnnnnnnnnnnnnnnnnncaaac---AACC--ATTGAAAAT-CTTAGAAGCCA-TT-GTTCTTTACT-TGTACAAA------CA----AA-GGTA-TATAT-CTACTCAA-TATA--TCATTTGA-TGTGTTGTTGG-AAGAATTTGT-GTTGCTTTAG-CTAT--CTGATAATAGGTTTGAATAA-----------------TTTCATAATTAGGAGCA-TGCATT--C------G--TACTAAGAA--TTTGTCAGCTAGGGAAAA-CACGGAATTTAAC--AGTGACACCTAACACC-----------CA-GA--CCG-ACG----TTAAGTTAATGCCAATGGAAAG-T-TATTCATCATGCAT---TCAC-AAAAT-CAT--GAGGATTCATAAGTGTA-CAATAA--TCACATATTCAACATATGTTTTTGCAG----ACA--TATGATTC------C--------CGCCTG----------TAAGATTTAAG--TTTC-ATCGCATTCAAGAC---AAAAAATAAA---ATATTGTGCT-GTTT-TTCT-TCTG---TTTTAATACTTTGTAATCATATGAATTAAAA-TCTGATAAAAT-T-AAATCAAGGTGT-GA-ATGGG--GGTT--TTATGGTAAATT----AACATCCCTGTAACTCATTACTT---CCCTATTagagt
gi|6 : -TTAAATCAAGGTGT-GA-ATGGG--GTTT--TTAAGGTAAATT----AACATCCCTGTAATTCATTATTT---CCCTACTGTCACCA--AA-ATATCTCGCGTATTTAATTCATCTG--ATACGAACTACCTTT--A-GTCAACAA--GGATAGTCTCATTTAA--T-TGTCAAAACAGAGTTATAG-AACCGAATTAT--GACC-GAAGTAGTTGGATAaaatcaaggtgtgaatggggtttttaaggtaaattaacatccctgtaattcattatttccctactgtcaccaaaatatctcgcgtatttaattcatctgatacgaactacctttagtcaacaaggatagtctcatttaattgtcaaaacagagttatagaaccgaattatgaccgaagtagttggata
gi|7 : aaccattgaaaatcttagaagccattgttctttacttgtacaaacaaaggtatatatctactcaatatatcatttgatgtgttgttggaagaatttgtgttgctttagctatctgataataggtttgaataatttcataattaggagcatgcattcgtactaagaatttgtcagctagggaaaacacggaatttaacagtgacacctaacacccagaccgacgttaagttaatgccaatggaaagttattcatcatgcattcacaaaatcatgaggattcataagtgtacaataatcacatattcaacatatgtttttgcagacatatgattcccgcctgtaagatttaagtttcatcgcattcaagacaaaaaataaaatattgtgctgtttttcttctgttttaatactttgtaatcatatgaattaaaatctgataaaattaaatcaaggtgtgaatgggggttttatggtaaattaacatccctgtaactcattacttcccta-G-CGG--TCATCACG--TGA-CTT-CAGCGATTA-TT----TGTTTACCTATCA-AGAGTACCT------GTA-T-T--TACTATAGG-CGA-T-AACGGGG-AG-T--------G-TGTA-A-TT--AAA-C-CAT--TA-T--A-ACT-TTT-TTCA-TATATT-ATATAGAAAA-A---A-GTT--GGACCCCTGAC--CCG-AAAGAGC--AT--TAAT-T-T---CTACA-AAA-----GA-TAA-TAT-A--T-T--TTA--TTTC--AGTTCGGAAAAAAAAG-A--TT-TATTGCTTCAAAA-TTCA----------TTTGAAAA-AT-AG-TGTTTA-TAC-G-TCTAAT-T-TTTAGTGT--G-TAA-ATA--A------ACAAAC-ATT--T-TGGTGAA----TTTTCGGCATTTTTGC--G------TGT-AATAAAAC-GTATTTTTTCAACCTATTT-TTCA---TACATATCTGGAAAA--AAGTTG----G-A-C-ATCTAGT------GTAAA---AGTTAAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAATCA---T--TCAG----TTCA-GA------AC-CAA----CTTTT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCAC-AGATATTG--AA--------A----CA---T--TC---AAA-------------ATGGCGGAC-GCAACAAGGGAGTAAACAAAGCGATTA--GCGTCATTACC---------A--TG---TGAAAGTTGCGTTATTTTAAAATCT
gi|8 : taGC--A------TGT-ATAAAAAT-GTA-ATTTTCAACCT-TTT-TACA---T--ATTTCTAGAAAA--CTTTTG----G-A-C-ATCTAGTATAAGTGTAAA---AGTTAAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAA--AGTAT--TCAG----TTCA-GA------AC-CTA----C-TTTTCTTGCTTCAAAATT------AAAA--------AATTTTCAC-CGATATTG--AA--------ACTTAT----T--TC---AAA-------------GTGGTGGAT-GCAAG-CGGGAGTAAACAA-GC----ATTGCAT------TTAATTTTGTA--TA---TGTATGTAGTGCTATTTTAAAATCTGTTT-----GTGTTAT-GAATA-AAGAC----AAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATA-TCCTTCCCTTGACTGACCACA-AATA-C-AAGTGCT---TGTGAATGGCTTTTAG-GC-A---AATC--ATTGAAAA-GCTTAGAAGCCA-TT-GTCTTTTACT-TGTACAAA------CA----AA-GGT-----------------TATA--TCAC---A----GTTGTTGG-AAGAATTGGT-GTTGTGTTAG-CTA
gi|9 : tatgTATCCAC-C----TTAT-G-TG---CCATCACG---GA-TTT-GATCAATTAATTGGTGTGTTGACCTATTA-AG-GTACCT------GTA-T-TATTACTATAGG-CCA-TCAACGGCGGAG-T--------G-TGTGCA-TTGAAAA-CATAT--TC-TCTA-ACG-TTT-TTCA-TGCATT-TAATAGAATA-AGGGA-GTTA-GGCCCCCTGATAGCTG--ACGAGTCGATTCTAA--T-T---TCATA-AAACATGGAA-TGA-TAT-A--T-TTCTTA--TTT---AG---GG--AAAATTG-AATTT-TATTGCTATGTAAATTCT----------CTTGAAAACATCAGTTGTGTATTACTG-TTCAATCG-ATAAACGT--G-TAAGAAT--A------ATGAGCAA-TGAT-TGGTGAATCTGTTTTCGG-A--TTTGC--GGTCTTCTGTCATAAAAAC-ATG--TTTGCACTGT-TTT-ATTG---T--TTTTTTGG--AA--AAGTT---------C-ATCTAGT------GTAAA---attgg
Alignments
lowQualScore : 1111 11111 111111 1111111111111 11 1111111 11111 11 11 111 11111 5555555555555555555555 111111 1111 111111111 11 111111 111111 1111 111111 111111 11 6666666666666666666666 111 3333333333333 666666666666666666666666666666 111 111 22222 111 222222 11 11 1 111111 111111 111 11 111 222222222222 11 111 11 222222222 11 22222222222 111 1111 1111 22222 11 5555555555555555555555555555555 11 111 333333333 2222 1 1 2222 1 1 11 11 1111 111 11 1 11 1111111 11 11111111 11
lowQualScore : 6 4444 5 5 77 777 55 5 666 4 11111 66 4 777777 4 4 66 4 4 4 7777777777777 4 4 4 11 4 4 55 4 66 4 4 4 4 0000000 77777 4 00 66 4 66 888 00 4 222 4 11111 4 4 4 55 4 55 55 55 55 0 66 55 4 7777777777777777777777 4444 4 8 55 8 11 4 4 1 55 4 4 66 777777 4 4 1111 9999 55 666666666 4 4 22 4 4 666 55 55 0 7777 3 3 3 000000 3 777 1 4 4 4 777 4 777 4 4 777777 66 3333 4 222222 4 777777 00 1 5 77 5 6666666666666666666666 77 000 1111111111111 5 777 777777777777777777777777777777 77 000 1 333 6 6 88888 6 6 6 6 99 6 3 6 6 6 111 5 111111 5 33 88 2 7 5 5 999999 9999 5 888888 5 5 77 3 555 0 5 5 6 11 0 0 11 1 8 555 1 8 8 0 666666666666 0 11 444 3 8 0 11 1 9999 1 8 0 666666666 8 11 8 8 8 55555555555 8 88 111 8 3 0 2222 0 0000 8 88888 11 3 2222222222222222222222222222222 3 11 88 6 0 444 222222222 3333 0 1 0 0000 3 3 0 8 8 8 6 11 11 1 3 7777 5 777 6 33 0 0 0 11 0 5 6666666 1 11 66666666 6 8 1 11 8
lowQualScore : . .... . . .. ... .. . ... . ..... .. . ...... . . .. . . . ............. . . . .. . . .. . .. . . . . ....... ..... . .. .. . .. ... .. . ... . ..... . . . .. . .. .. .. .. . .. .. . ...................... .... . . .. . .. . . . .. . . .. ...... . . .... .... .. ......... . . .. . . ... .. .. . .... . . . ...... . ... . . . . ... . ... . . ...... .. .... . ...... . ...... .. . . .. . ...................... .. ... ............. . ... .............................. .. ... . ... . . ..... . . . . .. . . . . . ... . ...... . .. .. . . . . ...... .... . ...... . . .. . ... . . . . .. . . .. . . ... . . . . ............ . .. ... . . . .. . .... . . . ......... . .. . . . ........... . .. ... . . . .... . .... . ..... .. . ............................... . .. .. . . ... ......... .... . . . .... . . . . . . . .. .. . . .... . ... . .. . . . .. . . ....... . .. ........ . . . .. .
lowQualScore : 7 2222 7 7 99 000 22 0 888 4 33333 11 4 222222 4 4 11 0 0 0 6666666666666 0 0 0 00 0 0 55 4 11 4 4 4 4 3333333 77777 4 66 11 4 11 000 66 4 222 4 11111 4 4 4 55 0 55 55 55 55 5 55 55 0 2222222222222222222222 5555 0 0 66 0 00 0 0 4 55 0 4 11 222222 4 4 6666 4444 11 000000000 4 4 11 4 0 444 00 00 3 7777 6 6 6 555555 2 000 9 4 4 4 888 4 888 4 4 111111 11 9999 4 888888 4 444444 77 4 7 99 7 3333333333333333333333 99 000 4444444444444 7 111 999999999999999999999999999999 99 000 4 000 7 7 33333 7 7 7 7 22 7 2 7 7 7 777 7 555555 1 88 66 5 0 0 0 444444 4444 0 444444 0 0 99 9 777 7 7 7 7 00 8 8 66 0 0 666 4 0 0 8 444444444444 8 00 000 8 0 8 00 4 4444 0 0 8 888888888 0 00 0 0 0 00000000000 0 88 888 0 8 8 6666 8 2222 0 00000 00 8 2222222222222222222222222222222 2 00 22 0 8 000 555555555 2222 0 0 0 8888 2 2 0 0 8 0 0 00 00 4 8 0000 6 555 7 88 0 8 8 00 8 0 2222222 0 00 88888888 7 0 0 00 0
consensus : TATCCAA-C----TATT-G-CGG--CCATCACG--TGA-CTT-GATCGATTA-TT----TGTTNACCTATTA-AGAGTACCT------GTA-T-T--TACTATAGG-CGA-T-AACGGGGGAG-T--------G-TGTG-A-TT--AAA-C-TAT--TA-T--A-ACT-TTT-TTCA-TGCATT-ATATAGAATA-A---A-GTT--GGACCCCTGAC--CTG-AAAGAGC--AT--TAA--T-T---CTACA-AAA-----GA-TGA-TAT-A--T-T--TTA--TTTC--AGTTCGG--AGAAATG-A--TT-TATTGC--------TTCA----------TTTGAAAA-AT-AG-TGTGTA-TAC-G-TTCAAT-G-ATTAGCGT--G-TAA-ATT--A------ACGAGC-A-T--N-CGGTGAA----TTTTCGGCA-TTTTGC--G------TGT-ATAAAAAC-GTA-TTTTTCAACCT-TTT-TTCA---T--ATTTCTGGAAAA--AAGTTG----G-A-C-ATCTAGT------GTAAA---AGTTAAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAA--A---T--TCAG----TTCA-GA------AC-CTA----C-TTT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCAC-CGATATTG--AA--------A----T----T--TC---AAA-------------ATGGCGGAC-GCAAC-CGGGAGTAAACAAAGCG---A--GCGT------C---------A--TG---TGAAAGTTGCGTTATTTTAAAATCTGTTTAA-TTGTGTTAT-GAATA-AAGAC-GACAAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATA-TCCTTTCCTTGACTGACCACA-AATA-C-AAGTGCT---TGCAAATGACTTTTGG-GCAA---AACC--ATTGAAAATTCTTAGAAGCCACTT-GTCTTTTACT-TGTACAAA------CA----AA-GGTT-TA-AT-CTACTCAA-TATA--TCATTTGAT-GTGTTGTTGG-AAGAATTTGT-GTTGTTTTAG-CTAT--CCGATAATTGGTTTGAATAAGATC-TAGAGGACCTA-TTTCATAATTAGGAGCA-TGCATT--TTACAA-G--TAATAAGAA--ATTGGCAG---GGAAAAA-CACAGAATTTAAC--AGTGACACCTAACACCT-CAATTTCAACA-AAAGCC--ACG----TTAAGTTAA-GC--ATGGAG-G-T-TATTCAT---GCATC-ATCAC-AAAAT-CAT--GAGGAT-CATAAGTATATCAATAA--TCGCATATTCAACATAT-TTTTT-CA-----ACA--TATAATCC------C--------C--CTG----------TAAGATTTAAG--TTTCCATCGTAATAAAGAC---AAAA--CAAA---ATATTGTGCC-GTGC-TNCT-TCTG---TTTTAATACTTTGTAATCATATGAATTAAAA-TCTGATAAAAT-TNAAATCAAGGTGT-GA-ATGGG--GGTT--TTAAGGTAAATT----AACATCCCTGTAACTCATTACTT---CCCTACTGTCACCA--AA-ATATCTCGCGTATTTAATTCATCTG--ATACGAACTACCGTT--A-GTCAACAA--GGATAGTCTC-----A--T-TGTCAAAACAGAGTTATCG-GACCNAATTAT--GACC-GAAATAGTTGGATA
Reference ( family-1174 ) : TATCCAA-C----TATT-G-CGG--CCATCACG--TGA-CTT-GATCGATTA-TT----TGTTNACCTATTA-AGAGTACCT------GTA-T-T--TACTATAGG-CGA-T-AACGGGGGAG-T--------G-TGTG-A-TT--AAA-C-TAT--TA-T--A-ACT-TTT-TTCA-TGCATT-ATATAGAATA-A---A-GTT--GGACCCCTGAC--CTG-AAAGAGC--AT--TAA--T-T---CTACA-AAA-----GA-TGA-TAT-A--T-T--TTA--TTTC--AGTTCGG--AGAAATG-A--TT-TATTGC--------TTCA----------TTTGAAAA-AT-AG-TGTGTA-TAC-G-TTCAAT-G-ATTAGCGT--G-TAA-ATT--A------ACGAGC-A-T--N-CGGTGAA----TTTTCGGCA-TTTTGC--G------TGT-ATAAAAAC-GTA-TTTTTCAACCT-TTT-TTCA---T--ATTTCTGGAAAA--AAGTTG----G-A-C-ATCTAGT------GTAAA---AGTTAAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAA--A---T--TCAG----TTCA-GA------AC-CTA----C-TTT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCAC-CGATATTG--AA--------A----T----T--TC---AAA-------------ATGGCGGAC-GCAAC-CGGGAGTAAACAAAGCG---A--GCGT------C---------A--TG---TGAAAGTTGCGTTATTTTAAAATCTGTTTAA-TTGTGTTAT-GAATA-AAGAC-GACAAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATA-TCCTTTCCTTGACTGACCACA-AATA-C-AAGTGCT---TGCAAATGACTTTTGG-GCAA---AACC--ATTGAAAATTCTTAGAAGCCACTT-GTCTTTTACT-TGTACAAA------CA----AA-GGTT-TA-AT-CTACTCAA-TATA--TCATTTGAT-NTGTTGTTGG-AAGAATTTGT-GTTGTTTTAG-CTAT--CCGATAATTGGTTTGAATAAGATC-TAGAGGACCTA-TTTCATAATTAGGAGCA-TGCATT--TTACAA-G--TAATAAGAA--ATTGGCAG---GGAAAAA-CACAGAATTTAAC--AGTGACACCTAACACCT-CAATTTCAACA-AAAGCC--ACG----TTAAGTTAA-GC--ATGGAG-G-T-TATTCAT---GCATC-ATCAC-AAAAT-CAT--GAGGAT-CATAAGTATATCAATAA--TCGCATATTCAACATAT-TTTTT-CA-----ACA--TATAATCC------C--------C--CTG----------TAAGATTTAAG--TTTCCATCGTAATAAAGAC---AAAA--CAAA---ATATTGTGCC-GTGC-TNCT-TCTG---TTTTAATACTTTGTAATCATATGAATTAAAA-TCTGATAAAAT-TNAAATCAAGGTGT-GA-ATGGG--GGTT--TTAAGGTAAATT----AACATCCCTGTAACTCATTACTT---CCCTACTGTCACCA--AA-ATATCTCGCGTATTTAATTCATCTG--ATACGAACTACCGTT--A-GTCAACAA--GGATAGTCTC-----A--T-TGTCAAAACAGAGTTATCG-GACCNAATTAT--GACC-GAAATAGTTGGATA
gi|1 : TATCCAA-C----TATT-GTCGG--TCATCACG--TGA--TT-GATCAATCA-TT-----GTTACCCTATTA-A-AGTACCTT-----GTA-T-T--TACTATAG--C-A-T-AAACGGGGAGCT--------G-CGTG-AATT--AAAAC-TAT--TAAT--AGACT-TTT-TTCAATGCATT-ATACA-AATA-ATA-A-GTTTAGGACCCCTGAC--CTGGAAAAAGC--AT---AA--T-T---CTACAGAAA-----GA-TGAATCT-GACT-T--TTA--TTCA--GGTTAGG--AGACATG-A--TT-TATTGC--------TTCAAAATTCGC--TTTGAAAA-AT-AG-TGTGTAGTAG-GATTCAAT-G--CTAGCGT--G-TAA-ATT--A------ACGAGC-A-T--TTCGTTGAA----TTTTCGGCA-TTTTGG--A------TGT-ATAAAAACGGTA-TTTTTCAACC--TGT-TTCA---T--ATTTCTGGGAAA--AAG-AG----G-ACC-ATCTAGT------GTAAA---AGTTAAAAC-A-C-TAAATAGATA-TATGAAAC---A-TAGAAAA--A---T--TCAGC---TTCA-GAGAACGCAT-CTA-------TT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--TAATTTTTAC-CGATATTGGAAA--------A----TGATCT--TC---TAA-------------A-GGCGGAC-GCAAC-C-GGAGTAAACAA-------A--ACGT------C---------A--TGATATGACAGTTGTGTTATTTTAAAATCTG-TTAA-TTGTGTTATGGAATA-GAAA--GACAAGAAGAGTACAAATCATTCGCTTACC--TAAGGTTGCGAAGAAATA-ACCTCTCCTTGAC-GACCACAGAATAGCAAAGTGCTAAATGCAA--GAC--TTGGCGCTA---AACCAAATTGAAAATGGCTAGAAG-CGCTTCGTTTTATACTATGATCAAATCAATTTA----AATGGTTATA-ATCCTACTCAAGTACAAGTCA-TTGAT--TGTTGTTGG-AAAA---TGT--TTGTTTTAGCCTAT--TCGAT-ATTCGTTGGAA-AAGATCTTAGAGGACTTATTTTCATAATATGGAGCA-TGCATCGATTACAA-GATCAATAAGAA--ATTGGCAG---GG-AAAA-CACAAA--TTAAC--AGAGACACCTAACACCT-C-ATTTCAACACAAAGTC---CG----TTAAGTTAA-GC--AT-GAG-G-T-TATTCAT----C-----TCACAAAAATACATGCGAGGAT-CAT-AGTATATCAATAAGGGCGC-TATTCAACATAT-TTTTT-CAAATATACATGTATAATCC------CCCCCCCCAC--CTGTAAAACTTGTTAAAATTTAAGGATTTCCTTTGTAATAAAGACTTAAAAA--CAAGCGCATATTGTGCCTGTGC-TACT-TCTGATATTTAAATACTTTGTAA-AATATGAATTAAAATTCTGATAAAATATGATGCAAAGGTGT-TAGATGGGCTGGTTTGTTAA-GTGAGTTATTAAACA-CCCTGTAGCTCATTACTTAAATTCTACTGTCACCAGTAACATTTTTTGCGTA-TTA--TCATCTGATATACGAACTACCGTTTGA-GTCAACAA--GGATAGTCTC-----ATTT-TGTGAAAACAGAGTTATCGAGACCAAATTATGGGACCAAAAATAGTTGGA
gi|10 : aCGTCACG--GGA-CTT-AA-CTATTA-TT----TGT-AACCTAGTG--GACTGTTTCATACAGTT-TAT--TACAATAGG-CGA------GGGGAAG-TTGGGATATG-TGTA-A-TTTTAAA-C-TATACGA-T--A-ACT-TTTCTTCA-TACGTT---------TA------------GGAC-----GC--CTA-AATGA----AT--TAT--T-T---CGACA-AAA-----CA---G-TA--G--T-T--TCC--TTGC----TTCA-----AAAT-----------------------TCA----------TTTGAAAA-GT-AG-TGTATT-TTC-G-TGTAAT-A-ATCTACGT--A-CAA-ATT--ACATTTAACGAGC-A-T--G-TGGTGAT----GTTTGGGGA-TAGAGC--A------TGC-ATAAAAAC-GGA-ATTTTCAACTT-TTTATTCA---T--ACTTCTGGAA-------TTGTTTAG-A-C-ATATAG---------------AG-TAAAAC-A-G-CACAC---TA-TATCAAAC---ATT-AAAAA--A---A--TCAA----TCCATG--------C-CTA----CTTTT-CTTACTTCAAat
gi|11 : TATCCAA-C----TATT-G-CGG--CCATCACG--TGA-TTT-GATGAATTA-TT----TGTTTACCTATTA-AGAGTACTT------GTA-T-T--TACTATAGG-CGA-T-AACGAGGA------------G-TGTG-A-TG--AAA-C-TAT--TT-T--A-ACT-TTT-TTCA-TCCATG-ATATTAAATA-T---A-G-T--GGACCCCTGAC--TTG-AAAGAGC--AT--TAC--TAT---CTACA-AAA-----GA-TGA-TAT-A--T-T--TTA--TTTC--AATTCGG--AAATATG-A--TT-TATTGCTTCAAAA-TTCA----------TTTTAAAA-AG-A---GTGTA-TAC-G-TCCAAT-G-ATTAACGT--G-T
gi|12 : TT-TTCACTGT--ATTTCTGAAAAT--CTTTTG----G-A-C-ATGAAAT------ATATATATAGT----AC-A-CGTA--C---TG-CATGAAAC---A-T-AACAA--A---TAATCAA----TCCA-GG------GC-CTA----C-TTT--TTTCTTCAAAATCATCTT
gi|13 : --AA-ATATCTCGCGTATTTAATTCAACTG--GT--GAACTACCGTT--A-GTCAACAA--GGATAGTCTC-----A--T-TGTCAAAACAGAGTTATCG-AACCTAATTAT--GACC-GAAATAGTTGGAT
gi|14 : --T-T--TTA--TTTC--AGTTAGG--AGAAATG-A--TT-TATTGC--------TTCA----------
gi|15 : --------TTCA----------TTTGAAAA-GC-AG-TGATTA-CAC-G-TGAAAT-G-ATCAGAGT--A-TAA-ATT--A------ACAAGC-A-T--G-CGGTG-A----TTTTaaattccnnnnnnnnnnnnnnnnnnnnnnnnnaatccactaggcgtaaat
gi|16 : ttttttgcttcaaaaATGACTTTTGG-GCAATATAGTC--ATTGAAA-TTCTTAGACGCCACT--GTCTTTTATC-TGTACAAA------CA----AA-GGTT-AT-AT-CTACTCAA-att
gi|17 : TATCTCGCGTATTTAATTCATCTG--ATACGAA-----GTT--ACG--AACTACCGTATAGTCTC-----A--T-TGTCAAA
gi|18 : GG-CGA-T-AACGGGG-AG-T--------G-TGTA-A-TT--AAA-C-TAT--
gi|19 : tatgtatcacgaaatctgactatttgaatcgtTCTT-----A--TATTTGAAAACAGAGTTATCG-GACCAAATTAT--GACC-AAAATAGTTGGATA
gi|2 : acTATCCAA-C----TATA-G-CGG--TCATTACG--TGA-CTT-AAGCGATTA-TT----TGTTTACCTATTA-AGAGTACCT------GTAAT-T--TACTATAGG-CG--T-AACGGGGGAG-T--------G-TGT--A-TT--AAA-C-CAT--TA-T--A-ACT-TTT-TTCA-TGCATT-AT-TAGAA-A-A---A-GTT--GGACCCCTGAC--CCG-AAAGAGC--AT--TAA--T-T---CTACA-AAA-----GA-TGA-TAT-A--T-T--TTA--TTTC--AGTTCGA--AAAAA---A--TT-TATTGC--------TTCA----------TTTGAAAA-AT-AG-TGTTTA-TAT-G-TT-AAT-G-ATTAGCGT--G-TAA--TT--A------ACGAGC-A-T--T-TGGTGAA----TTTTCGGCA-TTTTGC--A------TGT-ATAGAA-C-GTA-TTTTTCAACCT-TTT-TTCA---T--GTATCTGGAAAA--AAGTTG----G-A-C-ATCTAGA------GTAAA---AGTTAAAAC-A-T-TAAAC---TA-TATGAAAC---A-T-GAAAA--A---T--TCAG----TTCA-GA------AC-A-A----C-TTT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCACGCGATA-------------------------T--TC---AAA-------------ATGGCGGAC-GCCAC-CGGGAGTAAACAAAGCGCTTA--GCGT------C---------A--TG---TGAATGTTGTGTTATTAT-AAATATGTTTAA-TTGTGTTAT-GAATACAAGACTGACAAGAA-AG-A-AAATCATT-GCTTA-CCATGAAGTT-C--AGAAATG-TCCTTTCCTTGACTGACCATA-AATA-C--AGTGCT---TGCAAATGACTTTTGG-G-AATATAATC--ATTGGAAATTCTTAGAAGCCATTT-GTCTTTTATT-TGTACAAA------CA----AA-GGTT-TG-AT-CTACTCAA-TATA--TCATTTGGG-TTATTGTT-G-AAGAATTTGTGGTTGTTTTAG-CTAT--CCGATAATTGG-TTGAAT-CGATC-TAGAGGACCTA-TTTCATAATTATGAGCATTGCATT--TTACAA-G--TAAT-AGAATGATTGGCA----GGAAAAA-CACAGAATTTAAC--AGTGACACCTAA-ACCTCCAATTTCAACA-AAAGCC--ACGTTAATTAAGTTAA-GC--ATGGAG-GTT-TATTCAT---GCATC-ATCAC-AAAAT-CAT--GAGGAT-CATGAGTATATCAAT-A--TCGCATATTCAACAT-T-TTTTT-CA-----ACA--TGCAATTC------C--------C--CTG----------TAAGATTTAAG--TTTTCATTGTA--AAAG-C---AAAA--C--A---ATATTGT--T-GTGC-TCTT-TCTG----TTTAATACTTTGTAATCATATGAA-TAAAA-TCTGATCAAAT-TAAAATCAAGGTGT-GA-ATGGG--GATT--TTAAGGT-AATT----AACATCCCTGTAACTCATAACTT---CCCTACTGTCA-CA--AA-ATATCTCGCGTATTTAATTCATCTG--ATACGAACTA-CGT-----------------ATAGTCTC-----A--T-TGTCAAAACAGAGTTATCG-GACCTAATTAT--GACC-GAAATAGTTGGATA
gi|20 : A---T--GTATCTGGAAAA--AAGTTG----G-A-C-ATCTAGT------G
gi|3 : -TT----TGTTCTCCTATTA-AGAGTACCT------GTA-T-T--TACTATAGG-CGA-T-AACGGGGAA--T--------G-TGTG-A-TT--AAA-C-TAT--TA-T--A-ACT-TTT-TTCA-TGCATT-ATATACAATA-A---A-GTT--GGACCCCTGAC--CTG-AAAGAAC--AT--TAAATT-T---CTACA-AAA-----GA-TG---AT-A--T-T--TTAAGTTTC--AGTTCGG--AG-AATGAA--TT-TATTGCTCAAAA--TTTA----------TTTGAAAA-TA-AG-TGTGTA-TAG-GTTTCAAT-G-ATTATCGT--G-TAA-ATT--A------ACGAAC-A-T--A-CGGTGAA----TTTTCGGCA-TTTTGA--G------TGT-ATAAAAAC-GTA--TTTTCAACCT-TTT-TTCA---T--ATTTCTGGAAAA--AAGTTG----G-A-C-ATCTAGT------GT-AA---AGTTAAAAC-A-C-CAAAC---TATTATGAAAC---A-T-GAAAAACA---T--TCAG----TTGA-GA------AC-CTAAACTT-TTT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCAC-CGATATTGAAAA--------A----TTTAAT--TC---AAA-------------AT-GCGGACAGCAAC-C-GGAGTAAACAAAG----------GT------C---------A--TG---TGAAAGTTGTGTTA-TTTAAAATCTGTTTAATTTGTGTTAT-GAATA-AA----GACAAGAAGAG-A-AAATTATT-GCTTACCCATGAAGTT-C--AGAAATATTCCTTTCCTTGACTGACCACA-AATA-C-AAGTGCT---TGCAAATGACTTTTGA-G-AA---A--C--ATTGAAAA-TCTTAGAAG-CACTT-GTCTTTTACT-TGTACAAA-------A----AA-GGTT-AT-AT-CTACTCAA-TACA--ATATTTGATGTTGTTGTTCG-AAGAATTTGT-GTTGTTTTAG-CTAT--CCGATAATTGGTTTCAATAAGTTC-TAGA-GACTTA-TTTCATAATTAGGAGCA-TGCA-T--TTACAAGG--TAATAAGAA--ATT-GCAG---GGAAAAATCACAGAATTTAATCAAGAGACACCTAACACCT-CAATCTCAACA-AAAGCCAAAC-----TTAAGTTAA-GC--ATGGAG-G-T-TATTCA----GCATCGATCAC-AAAA--CA----AGGAT-CATAAGTATAT-AAT-A--TCGCATATTCAACA-----TTTT-CA-----ATA--TAT-GTCC------C--------C--CTG----------TAA-ATTTAAG--TTTCAATCGTAATAAAGAC---AAAA--ACAA---ATATTGTCTG-GTGCTTACTGTCTG---TTTTAATACTTTGTAATCATATGAATTAAAA-TCTGATAAAAA-TTAAATCAAGTGGTAGACAT-GG--GGTT--TTGTGGTAAATT----AACAGCCCTGTAACTCAT
gi|4 : atATCCAAAC----TATT-G-CAAATCCATCACAATTGATCTTAGATCAATTA-TT----TGTC--CCTATAAGAGAGTACCT------GTT-T-T--TACTATAG--CGA-T-AACTGG--AG-T--------GACGTG-A-TT--AAA-C-TAT--TA-T--A-ACT-ATT-T-----------------AATA-A---A-GTT--GGACCCCTGAC--CTG-AAAGAGC--AT--TAA--T-TT--CTACA-AAA-----GA-TGA-TAG-A--T-T--GTA--TTTC--AGTTCGG--AAAAATG-A--TT-TATTTC--------TTCAAAATTCA---TTTGAAAA-AT-AG-T-TGTA-TAC-G-TCCAAT-G-ATTAACATATG-TAA-ATT--A------ACGAGC-A-T--G-TGGTGAA----TTTTCGGCA-TTTTGC--G------TGT-ATAAAAAC-GTA-TTTTTGAACCT-TTT-TTCA---T--ATTCCTGGAAAA--ATGTTG----A-A-C-ATCTAGT------GTAAA---AGT-AAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAA--ACA-T--TCAG----TTCA-GA------TC-CTA----C-TTTTATTGCTTCAAAATCGTCTTGAAAAT-TAC--GAATTTTTAC-CAATATTG--AA--------ACA--T----T--TCGGCAAA-------------ATGGCGGAT-GCAAG-AGGGAGTAAACAAAGCG---------T------C---------A--TG---TGGTATTTGCGTTCTTTTAAAATCTGTTT-----GTGTTAT-GAATA-AAGAC----AAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATG-TCCTTTCCTTGACTGACCACA-AATA-C-AACTGCT---TGCAAATGACTTTTGG-GCAA---A-CC--ATTGAAAAT-CTTAGAAGCCA-TT-GTATTTTACT-TGTACAAA------CATTTTA---GTT-TATAT-CTACTCAA-TATA--TCATTTGAT-GTGTTGTTGG-AAGAATTTGT-GTAGTTTTAG-CTATATCCGATAATTGGTTTGAATAAGATC-TAGA---CCCA-TTTCATAATTAGGAGCA-TGCATA--T------G--TAATAAGAA--ATTGGCAG---GGAAAAA-CAAAGAATTTAAC--AGTGACACCTAACATCT-CAGTTATAACA-AAAGCC--ACG----TTCAGTTAA-GC--ATGAAA-G-TGTATTCAT----CATC-ATCAC-AAAAT-CAT--GAGGAT-AATAAATATATCAATAA--TCGCATATTCAACATAT-TTTTT-CA-----ACA--TATAATCCCATCCTC--------C--CTA----------TAAGATTTAAG--TTT-CATCGTAATAAAGAC---
gi|5 : TATCCCA-CACTTTATTTG-CGG--CCATCA-G--TT--CGT-GAT--ATTA-TC--------AA---ATAA-ATGGAACCT----------T-T--TACTATAGGTCGACT-AACCGGGGA--T--------G-T-TG-A-TT--AAC-C-AAT--TA-T--A-ACTAGTT-TTCA--GCATTTATATAGAATACA---ATGTT--GGACCCA-GAC--AAG-AAAGAGC--AT---AA--T-TTATCTACA-AAA-----GAATGA-TATTA--TCT--TTA--TTTTCGAGTCCGG--AGAA-T--A--TTACATTGC--------TTCAAAATCTCATCTATGAATA-AG-AG-TGTGTA--A--G-TTCAAT-GTATTATCGT--GATAT-ATTTAAC-----ACGAAC-A-T--A-CGGTGAA----TTT-CGGCA-GTTTGGTAG------TTT-ATAAAAAC-TTA-TTTATCATCAC-TTT-TTCA---T--A-TTCTGGAAAATTAAGTTG----GAA-CAATCTA-T------GT-AA---AGTTAAAACTATC-CAAAC---TA-TATAATACTGAA-C-AAAAC--A---T--TCAGTACATTAA-GA------ACTCTT----T-TTG-ATTGC-TCAAAATCTCCTTGAAAATCTAATTGAA-TTTCAC-C-ATATTG--AATAAACATGA----T----TTATC---AAATATGAGCGAATGTATGGCGGAC-GCAAC-CGGGAGTAAACAA-------A--ACGT------C---------ATGTG---TGAAAGTTGTGTTATTTTAAAATCTGTTTAA-TTGTGTTAT-GAATA-AA----GACAAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATA-ACCTCTCCTTGACGGACCACA-AATA-C-AAGTGCT---TGCAAATGACTTTTGG-GC-A---AACCATATTGAAAA-TCTTAGAAGCCA-TT-GTCTTTTACT-TGTACAAAT-----CA----A
gi|5 : a----AA-GGTT-TA--T-CTACTCAA-TAAT--TCAATTGAT-GTGTTGGGGGAAAGAATTTGT-tttnnnnnnnnnnnnnnnnnnnnnnnnncaaacaaggtttatctactcaataattcaattgatgtgttgggggaaagaatttgtagagt
gi|6 : atatcccacactttatttgcggccatcagttcgtgatattatcaaataaatggaaccttttactataggtcgactaaccggggatgttgattaaccaattataactagttttcagcatttatatagaatacaatgttggacccagacaagaaagagcataatttatctacaaaagaatgatattatctttattttcgagtccggagaatattacattgcttcaaaatctcatctatgaataagagtgtgtaagttcaatgtattatcgtgatatatttaacacgaacatacggtgaatttcggcagtttggtagtttataaaaacttatttatcatcactttttcatattctggaaaattaagttggaacaatctatgtaaagttaaaactatccaaactatataatactgaacaaaacattcagtacattaagaactctttttgattgctcaaaatctccttgaaaatctaattgaatttcaccatattgaataaacatgatttatcaaatatgagcgaatgtatggcggacgcaaccgggagtaaacaaaacgtcatgtgtgaaagttgtgttattttaaaatctgtttaattgtgttatgaataaagacaagaagagaaaatcattgcttacccatgaagttcagaaataacctctccttgacggaccacaaatacaagtgcttgcaaatgacttttgggcaaaccatattgaaaatcttagaagccattgtcttttacttgtacaaatcaatttnnnnnnnnnnnnnnnnnnnnnnnnncaaac---AACC--ATTGAAAAT-CTTAGAAGCCA-TT-GTTCTTTACT-TGTACAAA------CA----AA-GGTA-TATAT-CTACTCAA-TATA--TCATTTGAT-GTGTTGTTGG-AAGAATTTGT-GTTGCTTTAG-CTAT--CTGATAATAGGTTTGAATAA-----------------TTTCATAATTAGGAGCA-TGCATT--C------G--TACTAAGAA--TTTGTCAGCTAGGGAAAA-CACGGAATTTAAC--AGTGACACCTAACACC-----------CA-GA--CCG-ACG----TTAAGTTAATGCCAATGGAAAG-T-TATTCATCATGCAT---TCAC-AAAAT-CAT--GAGGATTCATAAGTGTA-CAATAA--TCACATATTCAACATATGTTTTTGCAG----ACA--TATGATTC------C--------CGCCTG----------TAAGATTTAAG--TTTC-ATCGCATTCAAGAC---AAAAAATAAA---ATATTGTGCT-GTTT-TTCT-TCTG---TTTTAATACTTTGTAATCATATGAATTAAAA-TCTGATAAAAT-T-AAATCAAGGTGT-GA-ATGGG--GGTT--TTATGGTAAATT----AACATCCCTGTAACTCATTACTT---CCCTATTagagt
gi|6 : -TTAAATCAAGGTGT-GA-ATGGG--GTTT--TTAAGGTAAATT----AACATCCCTGTAATTCATTATTT---CCCTACTGTCACCA--AA-ATATCTCGCGTATTTAATTCATCTG--ATACGAACTACCTTT--A-GTCAACAA--GGATAGTCTCATTTAA--T-TGTCAAAACAGAGTTATAG-AACCGAATTAT--GACC-GAAGTAGTTGGATAaaatcaaggtgtgaatggggtttttaaggtaaattaacatccctgtaattcattatttccctactgtcaccaaaatatctcgcgtatttaattcatctgatacgaactacctttagtcaacaaggatagtctcatttaattgtcaaaacagagttatagaaccgaattatgaccgaagtagttggata
gi|7 : aaccattgaaaatcttagaagccattgttctttacttgtacaaacaaaggtatatatctactcaatatatcatttgatgtgttgttggaagaatttgtgttgctttagctatctgataataggtttgaataatttcataattaggagcatgcattcgtactaagaatttgtcagctagggaaaacacggaatttaacagtgacacctaacacccagaccgacgttaagttaatgccaatggaaagttattcatcatgcattcacaaaatcatgaggattcataagtgtacaataatcacatattcaacatatgtttttgcagacatatgattcccgcctgtaagatttaagtttcatcgcattcaagacaaaaaataaaatattgtgctgtttttcttctgttttaatactttgtaatcatatgaattaaaatctgataaaattaaatcaaggtgtgaatgggggttttatggtaaattaacatccctgtaactcattacttcccta-G-CGG--TCATCACG--TGA-CTT-CAGCGATTA-TT----TGTTTACCTATCA-AGAGTACCT------GTA-T-T--TACTATAGG-CGA-T-AACGGGG-AG-T--------G-TGTA-A-TT--AAA-C-CAT--TA-T--A-ACT-TTT-TTCA-TATATT-ATATAGAAAA-A---A-GTT--GGACCCCTGAC--CCG-AAAGAGC--AT--TAAT-T-T---CTACA-AAA-----GA-TAA-TAT-A--T-T--TTA--TTTC--AGTTCGGAAAAAAAAG-A--TT-TATTGCTTCAAAA-TTCA----------TTTGAAAA-AT-AG-TGTTTA-TAC-G-TCTAAT-T-TTTAGTGT--G-TAA-ATA--A------ACAAAC-ATT--T-TGGTGAA----TTTTCGGCATTTTTGC--G------TGT-AATAAAAC-GTATTTTTTCAACCTATTT-TTCA---TACATATCTGGAAAA--AAGTTG----G-A-C-ATCTAGT------GTAAA---AGTTAAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAATCA---T--TCAG----TTCA-GA------AC-CAA----CTTTT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCAC-AGATATTG--AA--------A----CA---T--TC---AAA-------------ATGGCGGAC-GCAACAAGGGAGTAAACAAAGCGATTA--GCGTCATTACC---------A--TG---TGAAAGTTGCGTTATTTTAAAATCT
gi|8 : taGC--A------TGT-ATAAAAAT-GTA-ATTTTCAACCT-TTT-TACA---T--ATTTCTAGAAAA--CTTTTG----G-A-C-ATCTAGTATAAGTGTAAA---AGTTAAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAA--AGTAT--TCAG----TTCA-GA------AC-CTA----C-TTTTCTTGCTTCAAAATT------AAAA--------AATTTTCAC-CGATATTG--AA--------ACTTAT----T--TC---AAA-------------GTGGTGGAT-GCAAG-CGGGAGTAAACAA-GC----ATTGCAT------TTAATTTTGTA--TA---TGTATGTAGTGCTATTTTAAAATCTGTTT-----GTGTTAT-GAATA-AAGAC----AAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATA-TCCTTCCCTTGACTGACCACA-AATA-C-AAGTGCT---TGTGAATGGCTTTTAG-GC-A---AATC--ATTGAAAA-GCTTAGAAGCCA-TT-GTCTTTTACT-TGTACAAA------CA----AA-GGT-----------------TATA--TCAC---A----GTTGTTGG-AAGAATTGGT-GTTGTGTTAG-CTA
gi|9 : tatgTATCCAC-C----TTAT-G-TG---CCATCACG---GA-TTT-GATCAATTAATTGGTGTGTTGACCTATTA-AG-GTACCT------GTA-T-TATTACTATAGG-CCA-TCAACGGCGGAG-T--------G-TGTGCA-TTGAAAA-CATAT--TC-TCTA-ACG-TTT-TTCA-TGCATT-TAATAGAATA-AGGGA-GTTA-GGCCCCCTGATAGCTG--ACGAGTCGATTCTAA--T-T---TCATA-AAACATGGAA-TGA-TAT-A--T-TTCTTA--TTT---AG---GG--AAAATTG-AATTT-TATTGCTATGTAAATTCT----------CTTGAAAACATCAGTTGTGTATTACTG-TTCAATCG-ATAAACGT--G-TAAGAAT--A------ATGAGCAA-TGAT-TGGTGAATCTGTTTTCGG-A--TTTGC--GGTCTTCTGTCATAAAAAC-ATG--TTTGCACTGT-TTT-ATTG---T--TTTTTTGG--AA--AAGTT---------C-ATCTAGT------GTAAA---attgg
Alignments
lowQualScore : 1111 11111 111111 1111111111111 11 1111111 11111 11 11 111 11111 5555555555555555555555 111111 1111 111111111 11 111111 111111 1111 111111 111111 11 6666666666666666666666 111 3333333333333 666666666666666666666666666666 111 111 22222 111 222222 11 11 1 111111 111111 111 11 111 222222222222 11 111 11 222222222 11 22222222222 111 1111 1111 22222 11 5555555555555555555555555555555 11 111 333333333 2222 1 1 2222 1 1 11 11 1111 111 11 1 11 1111111 11 11111111 11
lowQualScore : 6 4444 5 5 77 777 55 5 666 4 11111 66 4 777777 4 4 66 4 4 4 7777777777777 4 4 4 11 4 4 55 4 66 4 4 4 4 0000000 77777 4 00 66 4 66 888 00 4 222 4 11111 4 4 4 55 4 55 55 55 55 0 66 55 4 7777777777777777777777 4444 4 8 55 8 11 4 4 1 55 4 4 66 777777 4 4 1111 9999 55 666666666 4 4 22 4 4 666 55 55 0 7777 3 3 3 000000 3 777 1 4 4 4 777 4 777 4 4 777777 66 3333 4 222222 4 777777 00 1 5 77 5 6666666666666666666666 77 000 1111111111111 5 777 777777777777777777777777777777 77 000 1 333 6 6 88888 6 6 6 6 99 6 3 6 6 6 111 5 111111 5 33 88 2 7 5 5 999999 9999 5 888888 5 5 77 3 111 0 5 5 6 11 0 0 11 1 8 555 1 8 8 0 666666666666 0 11 444 3 8 0 11 1 9999 1 8 0 666666666 8 11 8 8 8 55555555555 8 88 111 8 3 0 2222 0 0000 8 88888 11 3 2222222222222222222222222222222 3 11 88 6 0 444 222222222 3333 0 1 0 0000 3 3 0 8 8 8 6 11 11 1 3 7777 5 777 6 33 0 0 0 11 0 5 6666666 1 11 66666666 6 8 1 11 8
lowQualScore : . .... . . .. ... .. . ... . ..... .. . ...... . . .. . . . ............. . . . .. . . .. . .. . . . . ....... ..... . .. .. . .. ... .. . ... . ..... . . . .. . .. .. .. .. . .. .. . ...................... .... . . .. . .. . . . .. . . .. ...... . . .... .... .. ......... . . .. . . ... .. .. . .... . . . ...... . ... . . . . ... . ... . . ...... .. .... . ...... . ...... .. . . .. . ...................... .. ... ............. . ... .............................. .. ... . ... . . ..... . . . . .. . . . . . ... . ...... . .. .. . . . . ...... .... . ...... . . .. . ... . . . . .. . . .. . . ... . . . . ............ . .. ... . . . .. . .... . . . ......... . .. . . . ........... . .. ... . . . .... . .... . ..... .. . ............................... . .. .. . . ... ......... .... . . . .... . . . . . . . .. .. . . .... . ... . .. . . . .. . . ....... . .. ........ . . . .. .
lowQualScore : 7 2222 7 7 99 000 22 0 888 4 33333 11 4 222222 4 4 11 0 0 0 6666666666666 0 0 0 00 0 0 55 4 11 4 4 4 4 3333333 77777 4 66 11 4 11 000 66 4 222 4 11111 4 4 4 55 0 55 55 55 55 5 55 55 0 2222222222222222222222 5555 0 0 66 0 00 0 0 4 55 0 4 11 222222 4 4 6666 4444 11 000000000 4 4 11 4 0 444 00 00 3 7777 6 6 6 555555 2 000 9 4 4 4 888 4 888 4 4 111111 11 9999 4 888888 4 444444 77 4 7 99 7 3333333333333333333333 99 000 4444444444444 7 111 999999999999999999999999999999 99 000 4 000 7 7 33333 7 7 7 7 22 7 2 7 7 7 777 7 555555 1 88 66 5 0 0 0 444444 4444 0 444444 0 0 99 9 444 7 7 7 7 00 8 8 66 0 0 666 4 0 0 8 444444444444 8 00 000 8 0 8 00 4 4444 0 0 8 888888888 0 00 0 0 0 00000000000 0 88 888 0 8 8 6666 8 2222 0 00000 00 8 2222222222222222222222222222222 2 00 22 0 8 000 555555555 2222 0 0 0 8888 2 2 0 0 8 0 0 00 00 4 8 0000 6 555 7 88 0 8 8 00 8 0 2222222 0 00 88888888 7 0 0 00 0
consensus : TATCCAA-C----TATT-G-CGG--CCATCACG--TGA-CTT-GATCGATTA-TT----TGTTNACCTATTA-AGAGTACCT------GTA-T-T--TACTATAGG-CGA-T-AACGGGGGAG-T--------G-TGTG-A-TT--AAA-C-TAT--TA-T--A-ACT-TTT-TTCA-TGCATT-ATATAGAATA-A---A-GTT--GGACCCCTGAC--CTG-AAAGAGC--AT--TAA--T-T---CTACA-AAA-----GA-TGA-TAT-A--T-T--TTA--TTTC--AGTTCGG--AGAAATG-A--TT-TATTGC--------TTCA----------TTTGAAAA-AT-AG-TGTGTA-TAC-G-TTCAAT-G-ATTAGCGT--G-TAA-ATT--A------ACGAGC-A-T--N-CGGTGAA----TTTTCGGCA-TTTTGC--G------TGT-ATAAAAAC-GTA-TTTTTCAACCT-TTT-TTCA---T--ATTTCTGGAAAA--AAGTTG----G-A-C-ATCTAGT------GTAAA---AGTTAAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAA--A---T--TCAG----TTCA-GA------AC-CTA----C-TTT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCAC-CGATATTG--AA--------A----T----T--TC---AAA-------------ATGGCGGAC-GCAAC-CGGGAGTAAACAAAGCG---A--GCGT------C---------A--TG---TGAAAGTTGCGTTATTTTAAAATCTGTTTAA-TTGTGTTAT-GAATA-AAGAC-GACAAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATA-TCCTTTCCTTGACTGACCACA-AATA-C-AAGTGCT---TGCAAATGACTTTTGG-GCAA---AACC--ATTGAAAATTCTTAGAAGCCACTT-GTCTTTTACT-TGTACAAA------CA----AA-GGTT-TA-AT-CTACTCAA-TATA--TCATTTGATG-TGTTGTTGG-AAGAATTTGT-GTTGTTTTAG-CTAT--CCGATAATTGGTTTGAATAAGATC-TAGAGGACCTA-TTTCATAATTAGGAGCA-TGCATT--TTACAA-G--TAATAAGAA--ATTGGCAG---GGAAAAA-CACAGAATTTAAC--AGTGACACCTAACACCT-CAATTTCAACA-AAAGCC--ACG----TTAAGTTAA-GC--ATGGAG-G-T-TATTCAT---GCATC-ATCAC-AAAAT-CAT--GAGGAT-CATAAGTATATCAATAA--TCGCATATTCAACATAT-TTTTT-CA-----ACA--TATAATCC------C--------C--CTG----------TAAGATTTAAG--TTTCCATCGTAATAAAGAC---AAAA--CAAA---ATATTGTGCC-GTGC-TNCT-TCTG---TTTTAATACTTTGTAATCATATGAATTAAAA-TCTGATAAAAT-TNAAATCAAGGTGT-GA-ATGGG--GGTT--TTAAGGTAAATT----AACATCCCTGTAACTCATTACTT---CCCTACTGTCACCA--AA-ATATCTCGCGTATTTAATTCATCTG--ATACGAACTACCGTT--A-GTCAACAA--GGATAGTCTC-----A--T-TGTCAAAACAGAGTTATCG-GACCNAATTAT--GACC-GAAATAGTTGGATA
Reference ( family-1174 ) : TATCCAA-C----TATT-G-CGG--CCATCACG--TGA-CTT-GATCGATTA-TT----TGTTNACCTATTA-AGAGTACCT------GTA-T-T--TACTATAGG-CGA-T-AACGGGGGAG-T--------G-TGTG-A-TT--AAA-C-TAT--TA-T--A-ACT-TTT-TTCA-TGCATT-ATATAGAATA-A---A-GTT--GGACCCCTGAC--CTG-AAAGAGC--AT--TAA--T-T---CTACA-AAA-----GA-TGA-TAT-A--T-T--TTA--TTTC--AGTTCGG--AGAAATG-A--TT-TATTGC--------TTCA----------TTTGAAAA-AT-AG-TGTGTA-TAC-G-TTCAAT-G-ATTAGCGT--G-TAA-ATT--A------ACGAGC-A-T--N-CGGTGAA----TTTTCGGCA-TTTTGC--G------TGT-ATAAAAAC-GTA-TTTTTCAACCT-TTT-TTCA---T--ATTTCTGGAAAA--AAGTTG----G-A-C-ATCTAGT------GTAAA---AGTTAAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAA--A---T--TCAG----TTCA-GA------AC-CTA----C-TTT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCAC-CGATATTG--AA--------A----T----T--TC---AAA-------------ATGGCGGAC-GCAAC-CGGGAGTAAACAAAGCG---A--GCGT------C---------A--TG---TGAAAGTTGCGTTATTTTAAAATCTGTTTAA-TTGTGTTAT-GAATA-AAGAC-GACAAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATA-TCCTTTCCTTGACTGACCACA-AATA-C-AAGTGCT---TGCAAATGACTTTTGG-GCAA---AACC--ATTGAAAATTCTTAGAAGCCACTT-GTCTTTTACT-TGTACAAA------CA----AA-GGTT-TA-AT-CTACTCAA-TATA--TCATTTGATG-TGTTGTTGG-AAGAATTTGT-GTTGTTTTAG-CTAT--CCGATAATTGGTTTGAATAAGATC-TAGAGGACCTA-TTTCATAATTAGGAGCA-TGCATT--TTACAA-G--TAATAAGAA--ATTGGCAG---GGAAAAA-CACAGAATTTAAC--AGTGACACCTAACACCT-CAATTTCAACA-AAAGCC--ACG----TTAAGTTAA-GC--ATGGAG-G-T-TATTCAT---GCATC-ATCAC-AAAAT-CAT--GAGGAT-CATAAGTATATCAATAA--TCGCATATTCAACATAT-TTTTT-CA-----ACA--TATAATCC------C--------C--CTG----------TAAGATTTAAG--TTTCCATCGTAATAAAGAC---AAAA--CAAA---ATATTGTGCC-GTGC-TNCT-TCTG---TTTTAATACTTTGTAATCATATGAATTAAAA-TCTGATAAAAT-TNAAATCAAGGTGT-GA-ATGGG--GGTT--TTAAGGTAAATT----AACATCCCTGTAACTCATTACTT---CCCTACTGTCACCA--AA-ATATCTCGCGTATTTAATTCATCTG--ATACGAACTACCGTT--A-GTCAACAA--GGATAGTCTC-----A--T-TGTCAAAACAGAGTTATCG-GACCNAATTAT--GACC-GAAATAGTTGGATA
gi|1 : TATCCAA-C----TATT-GTCGG--TCATCACG--TGA--TT-GATCAATCA-TT-----GTTACCCTATTA-A-AGTACCTT-----GTA-T-T--TACTATAG--C-A-T-AAACGGGGAGCT--------G-CGTG-AATT--AAAAC-TAT--TAAT--AGACT-TTT-TTCAATGCATT-ATACA-AATA-ATA-A-GTTTAGGACCCCTGAC--CTGGAAAAAGC--AT---AA--T-T---CTACAGAAA-----GA-TGAATCT-GACT-T--TTA--TTCA--GGTTAGG--AGACATG-A--TT-TATTGC--------TTCAAAATTCGC--TTTGAAAA-AT-AG-TGTGTAGTAG-GATTCAAT-G--CTAGCGT--G-TAA-ATT--A------ACGAGC-A-T--TTCGTTGAA----TTTTCGGCA-TTTTGG--A------TGT-ATAAAAACGGTA-TTTTTCAACC--TGT-TTCA---T--ATTTCTGGGAAA--AAG-AG----G-ACC-ATCTAGT------GTAAA---AGTTAAAAC-A-C-TAAATAGATA-TATGAAAC---A-TAGAAAA--A---T--TCAGC---TTCA-GAGAACGCAT-CTA-------TT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--TAATTTTTAC-CGATATTGGAAA--------A----TGATCT--TC---TAA-------------A-GGCGGAC-GCAAC-C-GGAGTAAACAA-------A--ACGT------C---------A--TGATATGACAGTTGTGTTATTTTAAAATCTG-TTAA-TTGTGTTATGGAATA-GAAA--GACAAGAAGAGTACAAATCATTCGCTTACC--TAAGGTTGCGAAGAAATA-ACCTCTCCTTGAC-GACCACAGAATAGCAAAGTGCTAAATGCAA--GAC--TTGGCGCTA---AACCAAATTGAAAATGGCTAGAAG-CGCTTCGTTTTATACTATGATCAAATCAATTTA----AATGGTTATA-ATCCTACTCAAGTACAAGTCA-TTGAT--TGTTGTTGG-AAAA---TGT--TTGTTTTAGCCTAT--TCGAT-ATTCGTTGGAA-AAGATCTTAGAGGACTTATTTTCATAATATGGAGCA-TGCATCGATTACAA-GATCAATAAGAA--ATTGGCAG---GG-AAAA-CACAAA--TTAAC--AGAGACACCTAACACCT-C-ATTTCAACACAAAGTC---CG----TTAAGTTAA-GC--AT-GAG-G-T-TATTCAT----C-----TCACAAAAATACATGCGAGGAT-CAT-AGTATATCAATAAGGGCGC-TATTCAACATAT-TTTTT-CAAATATACATGTATAATCC------CCCCCCCCAC--CTGTAAAACTTGTTAAAATTTAAGGATTTCCTTTGTAATAAAGACTTAAAAA--CAAGCGCATATTGTGCCTGTGC-TACT-TCTGATATTTAAATACTTTGTAA-AATATGAATTAAAATTCTGATAAAATATGATGCAAAGGTGT-TAGATGGGCTGGTTTGTTAA-GTGAGTTATTAAACA-CCCTGTAGCTCATTACTTAAATTCTACTGTCACCAGTAACATTTTTTGCGTA-TTA--TCATCTGATATACGAACTACCGTTTGA-GTCAACAA--GGATAGTCTC-----ATTT-TGTGAAAACAGAGTTATCGAGACCAAATTATGGGACCAAAAATAGTTGGA
gi|10 : aCGTCACG--GGA-CTT-AA-CTATTA-TT----TGT-AACCTAGTG--GACTGTTTCATACAGTT-TAT--TACAATAGG-CGA------GGGGAAG-TTGGGATATG-TGTA-A-TTTTAAA-C-TATACGA-T--A-ACT-TTTCTTCA-TACGTT---------TA------------GGAC-----GC--CTA-AATGA----AT--TAT--T-T---CGACA-AAA-----CA---G-TA--G--T-T--TCC--TTGC----TTCA-----AAAT-----------------------TCA----------TTTGAAAA-GT-AG-TGTATT-TTC-G-TGTAAT-A-ATCTACGT--A-CAA-ATT--ACATTTAACGAGC-A-T--G-TGGTGAT----GTTTGGGGA-TAGAGC--A------TGC-ATAAAAAC-GGA-ATTTTCAACTT-TTTATTCA---T--ACTTCTGGAA-------TTGTTTAG-A-C-ATATAG---------------AG-TAAAAC-A-G-CACAC---TA-TATCAAAC---ATT-AAAAA--A---A--TCAA----TCCATG--------C-CTA----CTTTT-CTTACTTCAAat
gi|11 : TATCCAA-C----TATT-G-CGG--CCATCACG--TGA-TTT-GATGAATTA-TT----TGTTTACCTATTA-AGAGTACTT------GTA-T-T--TACTATAGG-CGA-T-AACGAGGA------------G-TGTG-A-TG--AAA-C-TAT--TT-T--A-ACT-TTT-TTCA-TCCATG-ATATTAAATA-T---A-G-T--GGACCCCTGAC--TTG-AAAGAGC--AT--TAC--TAT---CTACA-AAA-----GA-TGA-TAT-A--T-T--TTA--TTTC--AATTCGG--AAATATG-A--TT-TATTGCTTCAAAA-TTCA----------TTTTAAAA-AG-A---GTGTA-TAC-G-TCCAAT-G-ATTAACGT--G-T
gi|12 : TT-TTCACTGT--ATTTCTGAAAAT--CTTTTG----G-A-C-ATGAAAT------ATATATATAGT----AC-A-CGTA--C---TG-CATGAAAC---A-T-AACAA--A---TAATCAA----TCCA-GG------GC-CTA----C-TTT--TTTCTTCAAAATCATCTT
gi|13 : --AA-ATATCTCGCGTATTTAATTCAACTG--GT--GAACTACCGTT--A-GTCAACAA--GGATAGTCTC-----A--T-TGTCAAAACAGAGTTATCG-AACCTAATTAT--GACC-GAAATAGTTGGAT
gi|14 : --T-T--TTA--TTTC--AGTTAGG--AGAAATG-A--TT-TATTGC--------TTCA----------
gi|15 : --------TTCA----------TTTGAAAA-GC-AG-TGATTA-CAC-G-TGAAAT-G-ATCAGAGT--A-TAA-ATT--A------ACAAGC-A-T--G-CGGTG-A----TTTTaaattccnnnnnnnnnnnnnnnnnnnnnnnnnaatccactaggcgtaaat
gi|16 : ttttttgcttcaaaaATGACTTTTGG-GCAATATAGTC--ATTGAAA-TTCTTAGACGCCACT--GTCTTTTATC-TGTACAAA------CA----AA-GGTT-AT-AT-CTACTCAA-att
gi|17 : TATCTCGCGTATTTAATTCATCTG--ATACGAA-----GTT--ACG--AACTACCGTATAGTCTC-----A--T-TGTCAAA
gi|18 : GG-CGA-T-AACGGGG-AG-T--------G-TGTA-A-TT--AAA-C-TAT--
gi|19 : tatgtatcacgaaatctgactatttgaatcgtTCTT-----A--TATTTGAAAACAGAGTTATCG-GACCAAATTAT--GACC-AAAATAGTTGGATA
gi|2 : acTATCCAA-C----TATA-G-CGG--TCATTACG--TGA-CTT-AAGCGATTA-TT----TGTTTACCTATTA-AGAGTACCT------GTAAT-T--TACTATAGG-CG--T-AACGGGGGAG-T--------G-TGT--A-TT--AAA-C-CAT--TA-T--A-ACT-TTT-TTCA-TGCATT-AT-TAGAA-A-A---A-GTT--GGACCCCTGAC--CCG-AAAGAGC--AT--TAA--T-T---CTACA-AAA-----GA-TGA-TAT-A--T-T--TTA--TTTC--AGTTCGA--AAAAA---A--TT-TATTGC--------TTCA----------TTTGAAAA-AT-AG-TGTTTA-TAT-G-TT-AAT-G-ATTAGCGT--G-TAA--TT--A------ACGAGC-A-T--T-TGGTGAA----TTTTCGGCA-TTTTGC--A------TGT-ATAGAA-C-GTA-TTTTTCAACCT-TTT-TTCA---T--GTATCTGGAAAA--AAGTTG----G-A-C-ATCTAGA------GTAAA---AGTTAAAAC-A-T-TAAAC---TA-TATGAAAC---A-T-GAAAA--A---T--TCAG----TTCA-GA------AC-A-A----C-TTT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCACGCGATA-------------------------T--TC---AAA-------------ATGGCGGAC-GCCAC-CGGGAGTAAACAAAGCGCTTA--GCGT------C---------A--TG---TGAATGTTGTGTTATTAT-AAATATGTTTAA-TTGTGTTAT-GAATACAAGACTGACAAGAA-AG-A-AAATCATT-GCTTA-CCATGAAGTT-C--AGAAATG-TCCTTTCCTTGACTGACCATA-AATA-C--AGTGCT---TGCAAATGACTTTTGG-G-AATATAATC--ATTGGAAATTCTTAGAAGCCATTT-GTCTTTTATT-TGTACAAA------CA----AA-GGTT-TG-AT-CTACTCAA-TATA--TCATTTGGGT-TATTGTT-G-AAGAATTTGTGGTTGTTTTAG-CTAT--CCGATAATTGG-TTGAAT-CGATC-TAGAGGACCTA-TTTCATAATTATGAGCATTGCATT--TTACAA-G--TAAT-AGAATGATTGGCA----GGAAAAA-CACAGAATTTAAC--AGTGACACCTAA-ACCTCCAATTTCAACA-AAAGCC--ACGTTAATTAAGTTAA-GC--ATGGAG-GTT-TATTCAT---GCATC-ATCAC-AAAAT-CAT--GAGGAT-CATGAGTATATCAAT-A--TCGCATATTCAACAT-T-TTTTT-CA-----ACA--TGCAATTC------C--------C--CTG----------TAAGATTTAAG--TTTTCATTGTA--AAAG-C---AAAA--C--A---ATATTGT--T-GTGC-TCTT-TCTG----TTTAATACTTTGTAATCATATGAA-TAAAA-TCTGATCAAAT-TAAAATCAAGGTGT-GA-ATGGG--GATT--TTAAGGT-AATT----AACATCCCTGTAACTCATAACTT---CCCTACTGTCA-CA--AA-ATATCTCGCGTATTTAATTCATCTG--ATACGAACTA-CGT-----------------ATAGTCTC-----A--T-TGTCAAAACAGAGTTATCG-GACCTAATTAT--GACC-GAAATAGTTGGATA
gi|20 : A---T--GTATCTGGAAAA--AAGTTG----G-A-C-ATCTAGT------G
gi|3 : -TT----TGTTCTCCTATTA-AGAGTACCT------GTA-T-T--TACTATAGG-CGA-T-AACGGGGAA--T--------G-TGTG-A-TT--AAA-C-TAT--TA-T--A-ACT-TTT-TTCA-TGCATT-ATATACAATA-A---A-GTT--GGACCCCTGAC--CTG-AAAGAAC--AT--TAAATT-T---CTACA-AAA-----GA-TG---AT-A--T-T--TTAAGTTTC--AGTTCGG--AG-AATGAA--TT-TATTGCTCAAAA--TTTA----------TTTGAAAA-TA-AG-TGTGTA-TAG-GTTTCAAT-G-ATTATCGT--G-TAA-ATT--A------ACGAAC-A-T--A-CGGTGAA----TTTTCGGCA-TTTTGA--G------TGT-ATAAAAAC-GTA--TTTTCAACCT-TTT-TTCA---T--ATTTCTGGAAAA--AAGTTG----G-A-C-ATCTAGT------GT-AA---AGTTAAAAC-A-C-CAAAC---TATTATGAAAC---A-T-GAAAAACA---T--TCAG----TTGA-GA------AC-CTAAACTT-TTT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCAC-CGATATTGAAAA--------A----TTTAAT--TC---AAA-------------AT-GCGGACAGCAAC-C-GGAGTAAACAAAG----------GT------C---------A--TG---TGAAAGTTGTGTTA-TTTAAAATCTGTTTAATTTGTGTTAT-GAATA-AA----GACAAGAAGAG-A-AAATTATT-GCTTACCCATGAAGTT-C--AGAAATATTCCTTTCCTTGACTGACCACA-AATA-C-AAGTGCT---TGCAAATGACTTTTGA-G-AA---A--C--ATTGAAAA-TCTTAGAAG-CACTT-GTCTTTTACT-TGTACAAA-------A----AA-GGTT-AT-AT-CTACTCAA-TACA--ATATTTGATGTTGTTGTTCG-AAGAATTTGT-GTTGTTTTAG-CTAT--CCGATAATTGGTTTCAATAAGTTC-TAGA-GACTTA-TTTCATAATTAGGAGCA-TGCA-T--TTACAAGG--TAATAAGAA--ATT-GCAG---GGAAAAATCACAGAATTTAATCAAGAGACACCTAACACCT-CAATCTCAACA-AAAGCCAAAC-----TTAAGTTAA-GC--ATGGAG-G-T-TATTCA----GCATCGATCAC-AAAA--CA----AGGAT-CATAAGTATAT-AAT-A--TCGCATATTCAACA-----TTTT-CA-----ATA--TAT-GTCC------C--------C--CTG----------TAA-ATTTAAG--TTTCAATCGTAATAAAGAC---AAAA--ACAA---ATATTGTCTG-GTGCTTACTGTCTG---TTTTAATACTTTGTAATCATATGAATTAAAA-TCTGATAAAAA-TTAAATCAAGTGGTAGACAT-GG--GGTT--TTGTGGTAAATT----AACAGCCCTGTAACTCAT
gi|4 : atATCCAAAC----TATT-G-CAAATCCATCACAATTGATCTTAGATCAATTA-TT----TGTC--CCTATAAGAGAGTACCT------GTT-T-T--TACTATAG--CGA-T-AACTGG--AG-T--------GACGTG-A-TT--AAA-C-TAT--TA-T--A-ACT-ATT-T-----------------AATA-A---A-GTT--GGACCCCTGAC--CTG-AAAGAGC--AT--TAA--T-TT--CTACA-AAA-----GA-TGA-TAG-A--T-T--GTA--TTTC--AGTTCGG--AAAAATG-A--TT-TATTTC--------TTCAAAATTCA---TTTGAAAA-AT-AG-T-TGTA-TAC-G-TCCAAT-G-ATTAACATATG-TAA-ATT--A------ACGAGC-A-T--G-TGGTGAA----TTTTCGGCA-TTTTGC--G------TGT-ATAAAAAC-GTA-TTTTTGAACCT-TTT-TTCA---T--ATTCCTGGAAAA--ATGTTG----A-A-C-ATCTAGT------GTAAA---AGT-AAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAA--ACA-T--TCAG----TTCA-GA------TC-CTA----C-TTTTATTGCTTCAAAATCGTCTTGAAAAT-TAC--GAATTTTTAC-CAATATTG--AA--------ACA--T----T--TCGGCAAA-------------ATGGCGGAT-GCAAG-AGGGAGTAAACAAAGCG---------T------C---------A--TG---TGGTATTTGCGTTCTTTTAAAATCTGTTT-----GTGTTAT-GAATA-AAGAC----AAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATG-TCCTTTCCTTGACTGACCACA-AATA-C-AACTGCT---TGCAAATGACTTTTGG-GCAA---A-CC--ATTGAAAAT-CTTAGAAGCCA-TT-GTATTTTACT-TGTACAAA------CATTTTA---GTT-TATAT-CTACTCAA-TATA--TCATTTGATG-TGTTGTTGG-AAGAATTTGT-GTAGTTTTAG-CTATATCCGATAATTGGTTTGAATAAGATC-TAGA---CCCA-TTTCATAATTAGGAGCA-TGCATA--T------G--TAATAAGAA--ATTGGCAG---GGAAAAA-CAAAGAATTTAAC--AGTGACACCTAACATCT-CAGTTATAACA-AAAGCC--ACG----TTCAGTTAA-GC--ATGAAA-G-TGTATTCAT----CATC-ATCAC-AAAAT-CAT--GAGGAT-AATAAATATATCAATAA--TCGCATATTCAACATAT-TTTTT-CA-----ACA--TATAATCCCATCCTC--------C--CTA----------TAAGATTTAAG--TTT-CATCGTAATAAAGAC---
gi|5 : TATCCCA-CACTTTATTTG-CGG--CCATCA-G--TT--CGT-GAT--ATTA-TC--------AA---ATAA-ATGGAACCT----------T-T--TACTATAGGTCGACT-AACCGGGGA--T--------G-T-TG-A-TT--AAC-C-AAT--TA-T--A-ACTAGTT-TTCA--GCATTTATATAGAATACA---ATGTT--GGACCCA-GAC--AAG-AAAGAGC--AT---AA--T-TTATCTACA-AAA-----GAATGA-TATTA--TCT--TTA--TTTTCGAGTCCGG--AGAA-T--A--TTACATTGC--------TTCAAAATCTCATCTATGAATA-AG-AG-TGTGTA--A--G-TTCAAT-GTATTATCGT--GATAT-ATTTAAC-----ACGAAC-A-T--A-CGGTGAA----TTT-CGGCA-GTTTGGTAG------TTT-ATAAAAAC-TTA-TTTATCATCAC-TTT-TTCA---T--A-TTCTGGAAAATTAAGTTG----GAA-CAATCTA-T------GT-AA---AGTTAAAACTATC-CAAAC---TA-TATAATACTGAA-C-AAAAC--A---T--TCAGTACATTAA-GA------ACTCTT----T-TTG-ATTGC-TCAAAATCTCCTTGAAAATCTAATTGAA-TTTCAC-C-ATATTG--AATAAACATGA----T----TTATC---AAATATGAGCGAATGTATGGCGGAC-GCAAC-CGGGAGTAAACAA-------A--ACGT------C---------ATGTG---TGAAAGTTGTGTTATTTTAAAATCTGTTTAA-TTGTGTTAT-GAATA-AA----GACAAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATA-ACCTCTCCTTGACGGACCACA-AATA-C-AAGTGCT---TGCAAATGACTTTTGG-GC-A---AACCATATTGAAAA-TCTTAGAAGCCA-TT-GTCTTTTACT-TGTACAAAT-----CA----A
gi|5 : a----AA-GGTT-TA--T-CTACTCAA-TAAT--TCAATTGATG-TGTTGGGGGAAAGAATTTGT-tttnnnnnnnnnnnnnnnnnnnnnnnnncaaacaaggtttatctactcaataattcaattgatgtgttgggggaaagaatttgtagagt
gi|6 : atatcccacactttatttgcggccatcagttcgtgatattatcaaataaatggaaccttttactataggtcgactaaccggggatgttgattaaccaattataactagttttcagcatttatatagaatacaatgttggacccagacaagaaagagcataatttatctacaaaagaatgatattatctttattttcgagtccggagaatattacattgcttcaaaatctcatctatgaataagagtgtgtaagttcaatgtattatcgtgatatatttaacacgaacatacggtgaatttcggcagtttggtagtttataaaaacttatttatcatcactttttcatattctggaaaattaagttggaacaatctatgtaaagttaaaactatccaaactatataatactgaacaaaacattcagtacattaagaactctttttgattgctcaaaatctccttgaaaatctaattgaatttcaccatattgaataaacatgatttatcaaatatgagcgaatgtatggcggacgcaaccgggagtaaacaaaacgtcatgtgtgaaagttgtgttattttaaaatctgtttaattgtgttatgaataaagacaagaagagaaaatcattgcttacccatgaagttcagaaataacctctccttgacggaccacaaatacaagtgcttgcaaatgacttttgggcaaaccatattgaaaatcttagaagccattgtcttttacttgtacaaatcaatttnnnnnnnnnnnnnnnnnnnnnnnnncaaac---AACC--ATTGAAAAT-CTTAGAAGCCA-TT-GTTCTTTACT-TGTACAAA------CA----AA-GGTA-TATAT-CTACTCAA-TATA--TCATTTGATG-TGTTGTTGG-AAGAATTTGT-GTTGCTTTAG-CTAT--CTGATAATAGGTTTGAATAA-----------------TTTCATAATTAGGAGCA-TGCATT--C------G--TACTAAGAA--TTTGTCAGCTAGGGAAAA-CACGGAATTTAAC--AGTGACACCTAACACC-----------CA-GA--CCG-ACG----TTAAGTTAATGCCAATGGAAAG-T-TATTCATCATGCAT---TCAC-AAAAT-CAT--GAGGATTCATAAGTGTA-CAATAA--TCACATATTCAACATATGTTTTTGCAG----ACA--TATGATTC------C--------CGCCTG----------TAAGATTTAAG--TTTC-ATCGCATTCAAGAC---AAAAAATAAA---ATATTGTGCT-GTTT-TTCT-TCTG---TTTTAATACTTTGTAATCATATGAATTAAAA-TCTGATAAAAT-T-AAATCAAGGTGT-GA-ATGGG--GGTT--TTATGGTAAATT----AACATCCCTGTAACTCATTACTT---CCCTATTagagt
gi|6 : -TTAAATCAAGGTGT-GA-ATGGG--GTTT--TTAAGGTAAATT----AACATCCCTGTAATTCATTATTT---CCCTACTGTCACCA--AA-ATATCTCGCGTATTTAATTCATCTG--ATACGAACTACCTTT--A-GTCAACAA--GGATAGTCTCATTTAA--T-TGTCAAAACAGAGTTATAG-AACCGAATTAT--GACC-GAAGTAGTTGGATAaaatcaaggtgtgaatggggtttttaaggtaaattaacatccctgtaattcattatttccctactgtcaccaaaatatctcgcgtatttaattcatctgatacgaactacctttagtcaacaaggatagtctcatttaattgtcaaaacagagttatagaaccgaattatgaccgaagtagttggata
gi|7 : aaccattgaaaatcttagaagccattgttctttacttgtacaaacaaaggtatatatctactcaatatatcatttgatgtgttgttggaagaatttgtgttgctttagctatctgataataggtttgaataatttcataattaggagcatgcattcgtactaagaatttgtcagctagggaaaacacggaatttaacagtgacacctaacacccagaccgacgttaagttaatgccaatggaaagttattcatcatgcattcacaaaatcatgaggattcataagtgtacaataatcacatattcaacatatgtttttgcagacatatgattcccgcctgtaagatttaagtttcatcgcattcaagacaaaaaataaaatattgtgctgtttttcttctgttttaatactttgtaatcatatgaattaaaatctgataaaattaaatcaaggtgtgaatgggggttttatggtaaattaacatccctgtaactcattacttcccta-G-CGG--TCATCACG--TGA-CTT-CAGCGATTA-TT----TGTTTACCTATCA-AGAGTACCT------GTA-T-T--TACTATAGG-CGA-T-AACGGGG-AG-T--------G-TGTA-A-TT--AAA-C-CAT--TA-T--A-ACT-TTT-TTCA-TATATT-ATATAGAAAA-A---A-GTT--GGACCCCTGAC--CCG-AAAGAGC--AT--TAAT-T-T---CTACA-AAA-----GA-TAA-TAT-A--T-T--TTA--TTTC--AGTTCGGAAAAAAAAG-A--TT-TATTGCTTCAAAA-TTCA----------TTTGAAAA-AT-AG-TGTTTA-TAC-G-TCTAAT-T-TTTAGTGT--G-TAA-ATA--A------ACAAAC-ATT--T-TGGTGAA----TTTTCGGCATTTTTGC--G------TGT-AATAAAAC-GTATTTTTTCAACCTATTT-TTCA---TACATATCTGGAAAA--AAGTTG----G-A-C-ATCTAGT------GTAAA---AGTTAAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAATCA---T--TCAG----TTCA-GA------AC-CAA----CTTTT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCAC-AGATATTG--AA--------A----CA---T--TC---AAA-------------ATGGCGGAC-GCAACAAGGGAGTAAACAAAGCGATTA--GCGTCATTACC---------A--TG---TGAAAGTTGCGTTATTTTAAAATCT
gi|8 : taGC--A------TGT-ATAAAAAT-GTA-ATTTTCAACCT-TTT-TACA---T--ATTTCTAGAAAA--CTTTTG----G-A-C-ATCTAGTATAAGTGTAAA---AGTTAAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAA--AGTAT--TCAG----TTCA-GA------AC-CTA----C-TTTTCTTGCTTCAAAATT------AAAA--------AATTTTCAC-CGATATTG--AA--------ACTTAT----T--TC---AAA-------------GTGGTGGAT-GCAAG-CGGGAGTAAACAA-GC----ATTGCAT------TTAATTTTGTA--TA---TGTATGTAGTGCTATTTTAAAATCTGTTT-----GTGTTAT-GAATA-AAGAC----AAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATA-TCCTTCCCTTGACTGACCACA-AATA-C-AAGTGCT---TGTGAATGGCTTTTAG-GC-A---AATC--ATTGAAAA-GCTTAGAAGCCA-TT-GTCTTTTACT-TGTACAAA------CA----AA-GGT-----------------TATA--TCAC---A----GTTGTTGG-AAGAATTGGT-GTTGTGTTAG-CTA
gi|9 : tatgTATCCAC-C----TTAT-G-TG---CCATCACG---GA-TTT-GATCAATTAATTGGTGTGTTGACCTATTA-AG-GTACCT------GTA-T-TATTACTATAGG-CCA-TCAACGGCGGAG-T--------G-TGTGCA-TTGAAAA-CATAT--TC-TCTA-ACG-TTT-TTCA-TGCATT-TAATAGAATA-AGGGA-GTTA-GGCCCCCTGATAGCTG--ACGAGTCGATTCTAA--T-T---TCATA-AAACATGGAA-TGA-TAT-A--T-TTCTTA--TTT---AG---GG--AAAATTG-AATTT-TATTGCTATGTAAATTCT----------CTTGAAAACATCAGTTGTGTATTACTG-TTCAATCG-ATAAACGT--G-TAAGAAT--A------ATGAGCAA-TGAT-TGGTGAATCTGTTTTCGG-A--TTTGC--GGTCTTCTGTCATAAAAAC-ATG--TTTGCACTGT-TTT-ATTG---T--TTTTTTGG--AA--AAGTT---------C-ATCTAGT------GTAAA---attgg
Alignments
lowQualScore : 1111 11111 111111 1111111111111 11 1111111 11111 11 11 111 11111 5555555555555555555555 111111 1111 111111111 11 111111 111111 1111 111111 111111 11 6666666666666666666666 111 3333333333333 666666666666666666666666666666 111 111 22222 111 222222 11 11 1 111111 111111 111 11 111 222222222222 11 111 11 222222222 11 22222222222 111 1111 1111 22222 11 5555555555555555555555555555555 11 111 333333333 2222 1 1 2222 1 1 11 11 1111 111 11 1 11 1111111 11 11111111 11
lowQualScore : 6 4444 5 5 77 777 55 5 666 4 11111 66 4 777777 4 4 66 4 4 4 7777777777777 4 4 4 11 4 4 55 4 66 4 4 4 4 0000000 77777 4 00 66 4 66 888 00 4 222 4 11111 4 4 4 55 4 55 55 55 55 0 66 55 4 7777777777777777777777 4444 4 8 55 8 11 4 4 1 55 4 4 66 777777 4 4 1111 9999 55 666666666 4 4 22 4 4 666 55 55 0 7777 3 3 3 000000 3 777 1 4 4 4 777 4 777 4 4 777777 66 3333 4 222222 4 777777 00 1 5 77 5 6666666666666666666666 77 000 1111111111111 5 777 777777777777777777777777777777 77 000 1 333 6 6 88888 6 6 6 6 99 6 3 6 6 6 111 5 111111 5 33 88 2 7 5 5 999999 9999 5 888888 5 5 77 3 111 0 5 5 6 11 0 0 11 1 8 555 1 8 8 0 666666666666 0 11 444 3 8 0 11 1 9999 1 8 0 666666666 8 11 8 8 8 55555555555 8 88 111 8 3 0 2222 0 0000 8 88888 11 3 2222222222222222222222222222222 3 11 88 6 0 444 222222222 3333 0 1 0 0000 3 3 0 8 8 8 6 11 11 1 3 7777 5 777 6 33 0 0 0 11 0 5 6666666 1 11 66666666 6 8 1 11 8
lowQualScore : . .... . . .. ... .. . ... . ..... .. . ...... . . .. . . . ............. . . . .. . . .. . .. . . . . ....... ..... . .. .. . .. ... .. . ... . ..... . . . .. . .. .. .. .. . .. .. . ...................... .... . . .. . .. . . . .. . . .. ...... . . .... .... .. ......... . . .. . . ... .. .. . .... . . . ...... . ... . . . . ... . ... . . ...... .. .... . ...... . ...... .. . . .. . ...................... .. ... ............. . ... .............................. .. ... . ... . . ..... . . . . .. . . . . . ... . ...... . .. .. . . . . ...... .... . ...... . . .. . ... . . . . .. . . .. . . ... . . . . ............ . .. ... . . . .. . .... . . . ......... . .. . . . ........... . .. ... . . . .... . .... . ..... .. . ............................... . .. .. . . ... ......... .... . . . .... . . . . . . . .. .. . . .... . ... . .. . . . .. . . ....... . .. ........ . . . .. .
lowQualScore : 7 2222 7 7 99 000 22 0 888 4 33333 11 4 222222 4 4 11 0 0 0 6666666666666 0 0 0 00 0 0 55 4 11 4 4 4 4 3333333 77777 4 66 11 4 11 000 66 4 222 4 11111 4 4 4 55 0 55 55 55 55 5 55 55 0 2222222222222222222222 5555 0 0 66 0 00 0 0 4 55 0 4 11 222222 4 4 6666 4444 11 000000000 4 4 11 4 0 444 00 00 3 7777 6 6 6 555555 2 000 9 4 4 4 888 4 888 4 4 111111 11 9999 4 888888 4 444444 77 4 7 99 7 3333333333333333333333 99 000 4444444444444 7 111 999999999999999999999999999999 99 000 4 000 7 7 33333 7 7 7 7 22 7 2 7 7 7 777 7 555555 1 88 66 5 0 0 0 444444 4444 0 444444 0 0 99 9 444 7 7 7 7 00 8 8 66 0 0 666 4 0 0 8 444444444444 8 00 000 8 0 8 00 4 4444 0 0 8 888888888 0 00 0 0 0 00000000000 0 88 888 0 8 8 6666 8 2222 0 00000 00 8 2222222222222222222222222222222 2 00 22 0 8 000 555555555 2222 0 0 0 8888 2 2 0 0 8 0 0 00 00 4 8 0000 6 555 7 88 0 8 8 00 8 0 2222222 0 00 88888888 7 0 0 00 0
consensus : TATCCAA-C----TATT-G-CGG--CCATCACG--TGA-CTT-GATCGATTA-TT----TGTTNACCTATTA-AGAGTACCT------GTA-T-T--TACTATAGG-CGA-T-AACGGGGGAG-T--------G-TGTG-A-TT--AAA-C-TAT--TA-T--A-ACT-TTT-TTCA-TGCATT-ATATAGAATA-A---A-GTT--GGACCCCTGAC--CTG-AAAGAGC--AT--TAA--T-T---CTACA-AAA-----GA-TGA-TAT-A--T-T--TTA--TTTC--AGTTCGG--AGAAATG-A--TT-TATTGC--------TTCA----------TTTGAAAA-AT-AG-TGTGTA-TAC-G-TTCAAT-G-ATTAGCGT--G-TAA-ATT--A------ACGAGC-A-T--N-CGGTGAA----TTTTCGGCA-TTTTGC--G------TGT-ATAAAAAC-GTA-TTTTTCAACCT-TTT-TTCA---T--ATTTCTGGAAAA--AAGTTG----G-A-C-ATCTAGT------GTAAA---AGTTAAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAA--A---T--TCAG----TTCA-GA------AC-CTA----C-TTT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCAC-CGATATTG--AA--------A----T----T--TC---AAA-------------ATGGCGGAC-GCAAC-CGGGAGTAAACAAAGCG---A--GCGT------C---------A--TG---TGAAAGTTGCGTTATTTTAAAATCTGTTTAA-TTGTGTTAT-GAATA-AAGAC-GACAAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATA-TCCTTTCCTTGACTGACCACA-AATA-C-AAGTGCT---TGCAAATGACTTTTGG-GCAA---AACC--ATTGAAAATTCTTAGAAGCCACTT-GTCTTTTACT-TGTACAAA------CA----AA-GGTT-TA-AT-CTACTCAA-TATA--TCATTTGATG-TGTTGTTGG-AAGAATTTGT-GTTGTTTTAG-CTAT--CCGATAATTGGTTTGAATAAGATC-TAGAGGACCTA-TTTCATAATTAGGAGCA-TGCATT--TTACAA-G--TAATAAGAA--ATTGGCAG---GGAAAAA-CACAGAATTTAAC--AGTGACACCTAACACCT-CAATTTCAACA-AAAGCC--ACG----TTAAGTTAA-GC--ATGGAG-G-T-TATTCAT---GCATC-ATCAC-AAAAT-CAT--GAGGAT-CATAAGTATATCAATAA--TCGCATATTCAACATAT-TTTTT-CA-----ACA--TATAATCC------C--------C--CTG----------TAAGATTTAAG--TTTCCATCGTAATAAAGAC---AAAA--CAAA---ATATTGTGCC-GTGC-TNCT-TCTG---TTTTAATACTTTGTAATCATATGAATTAAAA-TCTGATAAAAT-TNAAATCAAGGTGT-GA-ATGGG--GGTT--TTAAGGTAAATT----AACATCCCTGTAACTCATTACTT---CCCTACTGTCACCA--AA-ATATCTCGCGTATTTAATTCATCTG--ATACGAACTACCGTT--A-GTCAACAA--GGATAGTCTC-----A--T-TGTCAAAACAGAGTTATCG-GACCNAATTAT--GACC-GAAATAGTTGGATA
Reference ( family-1174 ) : TATCCAA-C----TATT-G-CGG--CCATCACG--TGA-CTT-GATCGATTA-TT----TGTTNACCTATTA-AGAGTACCT------GTA-T-T--TACTATAGG-CGA-T-AACGGGGGAG-T--------G-TGTG-A-TT--AAA-C-TAT--TA-T--A-ACT-TTT-TTCA-TGCATT-ATATAGAATA-A---A-GTT--GGACCCCTGAC--CTG-AAAGAGC--AT--TAA--T-T---CTACA-AAA-----GA-TGA-TAT-A--T-T--TTA--TTTC--AGTTCGG--AGAAATG-A--TT-TATTGC--------TTCA----------TTTGAAAA-AT-AG-TGTGTA-TAC-G-TTCAAT-G-ATTAGCGT--G-TAA-ATT--A------ACGAGC-A-T--N-CGGTGAA----TTTTCGGCA-TTTTGC--G------TGT-ATAAAAAC-GTA-TTTTTCAACCT-TTT-TTCA---T--ATTTCTGGAAAA--AAGTTG----G-A-C-ATCTAGT------GTAAA---AGTTAAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAA--A---T--TCAG----TTCA-GA------AC-CTA----C-TTT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCAC-CGATATTG--AA--------A----T----T--TC---AAA-------------ATGGCGGAC-GCAAC-CGGGAGTAAACAAAGCG---A--GCGT------C---------A--TG---TGAAAGTTGCGTTATTTTAAAATCTGTTTAA-TTGTGTTAT-GAATA-AAGAC-GACAAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATA-TCCTTTCCTTGACTGACCACA-AATA-C-AAGTGCT---TGCAAATGACTTTTGG-GCAA---AACC--ATTGAAAATTCTTAGAAGCCACTT-GTCTTTTACT-TGTACAAA------CA----AA-GGTT-TA-AT-CTACTCAA-TATA--TCATTTGATG-TGTTGTTGG-AAGAATTTGT-GTTGTTTTAG-CTAT--CCGATAATTGGTTTGAATAAGATC-TAGAGGACCTA-TTTCATAATTAGGAGCA-TGCATT--TTACAA-G--TAATAAGAA--ATTGGCAG---GGAAAAA-CACAGAATTTAAC--AGTGACACCTAACACCT-CAATTTCAACA-AAAGCC--ACG----TTAAGTTAA-GC--ATGGAG-G-T-TATTCAT---GCATC-ATCAC-AAAAT-CAT--GAGGAT-CATAAGTATATCAATAA--TCGCATATTCAACATAT-TTTTT-CA-----ACA--TATAATCC------C--------C--CTG----------TAAGATTTAAG--TTTCCATCGTAATAAAGAC---AAAA--CAAA---ATATTGTGCC-GTGC-TNCT-TCTG---TTTTAATACTTTGTAATCATATGAATTAAAA-TCTGATAAAAT-TNAAATCAAGGTGT-GA-ATGGG--GGTT--TTAAGGTAAATT----AACATCCCTGTAACTCATTACTT---CCCTACTGTCACCA--AA-ATATCTCGCGTATTTAATTCATCTG--ATACGAACTACCGTT--A-GTCAACAA--GGATAGTCTC-----A--T-TGTCAAAACAGAGTTATCG-GACCNAATTAT--GACC-GAAATAGTTGGATA
gi|1 : TATCCAA-C----TATT-GTCGG--TCATCACG--TGA--TT-GATCAATCA-TT-----GTTACCCTATTA-A-AGTACCTT-----GTA-T-T--TACTATAG--C-A-T-AAACGGGGAGCT--------G-CGTG-AATT--AAAAC-TAT--TAAT--AGACT-TTT-TTCAATGCATT-ATACA-AATA-ATA-A-GTTTAGGACCCCTGAC--CTGGAAAAAGC--AT---AA--T-T---CTACAGAAA-----GA-TGAATCT-GACT-T--TTA--TTCA--GGTTAGG--AGACATG-A--TT-TATTGC--------TTCAAAATTCGC--TTTGAAAA-AT-AG-TGTGTAGTAG-GATTCAAT-G--CTAGCGT--G-TAA-ATT--A------ACGAGC-A-T--TTCGTTGAA----TTTTCGGCA-TTTTGG--A------TGT-ATAAAAACGGTA-TTTTTCAACC--TGT-TTCA---T--ATTTCTGGGAAA--AAG-AG----G-ACC-ATCTAGT------GTAAA---AGTTAAAAC-A-C-TAAATAGATA-TATGAAAC---A-TAGAAAA--A---T--TCAGC---TTCA-GAGAACGCAT-CTA-------TT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--TAATTTTTAC-CGATATTGGAAA--------A----TGATCT--TC---TAA-------------A-GGCGGAC-GCAAC-C-GGAGTAAACAA-------A--ACGT------C---------A--TGATATGACAGTTGTGTTATTTTAAAATCTG-TTAA-TTGTGTTATGGAATA-GAAA--GACAAGAAGAGTACAAATCATTCGCTTACC--TAAGGTTGCGAAGAAATA-ACCTCTCCTTGAC-GACCACAGAATAGCAAAGTGCTAAATGCAA--GAC--TTGGCGCTA---AACCAAATTGAAAATGGCTAGAAG-CGCTTCGTTTTATACTATGATCAAATCAATTTA----AATGGTTATA-ATCCTACTCAAGTACAAGTCA-TTGAT--TGTTGTTGG-AAAA---TGT--TTGTTTTAGCCTAT--TCGAT-ATTCGTTGGAA-AAGATCTTAGAGGACTTATTTTCATAATATGGAGCA-TGCATCGATTACAA-GATCAATAAGAA--ATTGGCAG---GG-AAAA-CACAAA--TTAAC--AGAGACACCTAACACCT-C-ATTTCAACACAAAGTC---CG----TTAAGTTAA-GC--AT-GAG-G-T-TATTCAT----C-----TCACAAAAATACATGCGAGGAT-CAT-AGTATATCAATAAGGGCGC-TATTCAACATAT-TTTTT-CAAATATACATGTATAATCC------CCCCCCCCAC--CTGTAAAACTTGTTAAAATTTAAGGATTTCCTTTGTAATAAAGACTTAAAAA--CAAGCGCATATTGTGCCTGTGC-TACT-TCTGATATTTAAATACTTTGTAA-AATATGAATTAAAATTCTGATAAAATATGATGCAAAGGTGT-TAGATGGGCTGGTTTGTTAA-GTGAGTTATTAAACA-CCCTGTAGCTCATTACTTAAATTCTACTGTCACCAGTAACATTTTTTGCGTA-TTA--TCATCTGATATACGAACTACCGTTTGA-GTCAACAA--GGATAGTCTC-----ATTT-TGTGAAAACAGAGTTATCGAGACCAAATTATGGGACCAAAAATAGTTGGA
gi|10 : aCGTCACG--GGA-CTT-AA-CTATTA-TT----TGT-AACCTAGTG--GACTGTTTCATACAGTT-TAT--TACAATAGG-CGA------GGGGAAG-TTGGGATATG-TGTA-A-TTTTAAA-C-TATACGA-T--A-ACT-TTTCTTCA-TACGTT---------TA------------GGAC-----GC--CTA-AATGA----AT--TAT--T-T---CGACA-AAA-----CA---G-TA--G--T-T--TCC--TTGC----TTCA-----AAAT-----------------------TCA----------TTTGAAAA-GT-AG-TGTATT-TTC-G-TGTAAT-A-ATCTACGT--A-CAA-ATT--ACATTTAACGAGC-A-T--G-TGGTGAT----GTTTGGGGA-TAGAGC--A------TGC-ATAAAAAC-GGA-ATTTTCAACTT-TTTATTCA---T--ACTTCTGGAA-------TTGTTTAG-A-C-ATATAG---------------AG-TAAAAC-A-G-CACAC---TA-TATCAAAC---ATT-AAAAA--A---A--TCAA----TCCATG--------C-CTA----CTTTT-CTTACTTCAAat
gi|11 : TATCCAA-C----TATT-G-CGG--CCATCACG--TGA-TTT-GATGAATTA-TT----TGTTTACCTATTA-AGAGTACTT------GTA-T-T--TACTATAGG-CGA-T-AACGAGGA------------G-TGTG-A-TG--AAA-C-TAT--TT-T--A-ACT-TTT-TTCA-TCCATG-ATATTAAATA-T---A-G-T--GGACCCCTGAC--TTG-AAAGAGC--AT--TAC--TAT---CTACA-AAA-----GA-TGA-TAT-A--T-T--TTA--TTTC--AATTCGG--AAATATG-A--TT-TATTGCTTCAAAA-TTCA----------TTTTAAAA-AG-A---GTGTA-TAC-G-TCCAAT-G-ATTAACGT--G-T
gi|12 : TT-TTCACTGT--ATTTCTGAAAAT--CTTTTG----G-A-C-ATGAAAT------ATATATATAGT----AC-A-CGTA--C---TG-CATGAAAC---A-T-AACAA--A---TAATCAA----TCCA-GG------GC-CTA----C-TTT--TTTCTTCAAAATCATCTT
gi|13 : --AA-ATATCTCGCGTATTTAATTCAACTG--GT--GAACTACCGTT--A-GTCAACAA--GGATAGTCTC-----A--T-TGTCAAAACAGAGTTATCG-AACCTAATTAT--GACC-GAAATAGTTGGAT
gi|14 : --T-T--TTA--TTTC--AGTTAGG--AGAAATG-A--TT-TATTGC--------TTCA----------
gi|15 : --------TTCA----------TTTGAAAA-GC-AG-TGATTA-CAC-G-TGAAAT-G-ATCAGAGT--A-TAA-ATT--A------ACAAGC-A-T--G-CGGTG-A----TTTTaaattccnnnnnnnnnnnnnnnnnnnnnnnnnaatccactaggcgtaaat
gi|16 : ttttttgcttcaaaaATGACTTTTGG-GCAATATAGTC--ATTGAAA-TTCTTAGACGCCACT--GTCTTTTATC-TGTACAAA------CA----AA-GGTT-AT-AT-CTACTCAA-att
gi|17 : TATCTCGCGTATTTAATTCATCTG--ATACGAA-----GTT--ACG--AACTACCGTATAGTCTC-----A--T-TGTCAAA
gi|18 : GG-CGA-T-AACGGGG-AG-T--------G-TGTA-A-TT--AAA-C-TAT--
gi|19 : tatgtatcacgaaatctgactatttgaatcgtTCTT-----A--TATTTGAAAACAGAGTTATCG-GACCAAATTAT--GACC-AAAATAGTTGGATA
gi|2 : acTATCCAA-C----TATA-G-CGG--TCATTACG--TGA-CTT-AAGCGATTA-TT----TGTTTACCTATTA-AGAGTACCT------GTAAT-T--TACTATAGG-CG--T-AACGGGGGAG-T--------G-TGT--A-TT--AAA-C-CAT--TA-T--A-ACT-TTT-TTCA-TGCATT-AT-TAGAA-A-A---A-GTT--GGACCCCTGAC--CCG-AAAGAGC--AT--TAA--T-T---CTACA-AAA-----GA-TGA-TAT-A--T-T--TTA--TTTC--AGTTCGA--AAAAA---A--TT-TATTGC--------TTCA----------TTTGAAAA-AT-AG-TGTTTA-TAT-G-TT-AAT-G-ATTAGCGT--G-TAA--TT--A------ACGAGC-A-T--T-TGGTGAA----TTTTCGGCA-TTTTGC--A------TGT-ATAGAA-C-GTA-TTTTTCAACCT-TTT-TTCA---T--GTATCTGGAAAA--AAGTTG----G-A-C-ATCTAGA------GTAAA---AGTTAAAAC-A-T-TAAAC---TA-TATGAAAC---A-T-GAAAA--A---T--TCAG----TTCA-GA------AC-A-A----C-TTT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCACGCGATA-------------------------T--TC---AAA-------------ATGGCGGAC-GCCAC-CGGGAGTAAACAAAGCGCTTA--GCGT------C---------A--TG---TGAATGTTGTGTTATTAT-AAATATGTTTAA-TTGTGTTAT-GAATACAAGACTGACAAGAA-AG-A-AAATCATT-GCTTA-CCATGAAGTT-C--AGAAATG-TCCTTTCCTTGACTGACCATA-AATA-C--AGTGCT---TGCAAATGACTTTTGG-G-AATATAATC--ATTGGAAATTCTTAGAAGCCATTT-GTCTTTTATT-TGTACAAA------CA----AA-GGTT-TG-AT-CTACTCAA-TATA--TCATTTGGGT-TATTGTT-G-AAGAATTTGTGGTTGTTTTAG-CTAT--CCGATAATTGG-TTGAAT-CGATC-TAGAGGACCTA-TTTCATAATTATGAGCATTGCATT--TTACAA-G--TAAT-AGAATGATTGGCA----GGAAAAA-CACAGAATTTAAC--AGTGACACCTAA-ACCTCCAATTTCAACA-AAAGCC--ACGTTAATTAAGTTAA-GC--ATGGAG-GTT-TATTCAT---GCATC-ATCAC-AAAAT-CAT--GAGGAT-CATGAGTATATCAAT-A--TCGCATATTCAACAT-T-TTTTT-CA-----ACA--TGCAATTC------C--------C--CTG----------TAAGATTTAAG--TTTTCATTGTA--AAAG-C---AAAA--C--A---ATATTGT--T-GTGC-TCTT-TCTG----TTTAATACTTTGTAATCATATGAA-TAAAA-TCTGATCAAAT-TAAAATCAAGGTGT-GA-ATGGG--GATT--TTAAGGT-AATT----AACATCCCTGTAACTCATAACTT---CCCTACTGTCA-CA--AA-ATATCTCGCGTATTTAATTCATCTG--ATACGAACTA-CGT-----------------ATAGTCTC-----A--T-TGTCAAAACAGAGTTATCG-GACCTAATTAT--GACC-GAAATAGTTGGATA
gi|20 : A---T--GTATCTGGAAAA--AAGTTG----G-A-C-ATCTAGT------G
gi|3 : -TT----TGTTCTCCTATTA-AGAGTACCT------GTA-T-T--TACTATAGG-CGA-T-AACGGGGAA--T--------G-TGTG-A-TT--AAA-C-TAT--TA-T--A-ACT-TTT-TTCA-TGCATT-ATATACAATA-A---A-GTT--GGACCCCTGAC--CTG-AAAGAAC--AT--TAAATT-T---CTACA-AAA-----GA-TG---AT-A--T-T--TTAAGTTTC--AGTTCGG--AG-AATGAA--TT-TATTGCTCAAAA--TTTA----------TTTGAAAA-TA-AG-TGTGTA-TAG-GTTTCAAT-G-ATTATCGT--G-TAA-ATT--A------ACGAAC-A-T--A-CGGTGAA----TTTTCGGCA-TTTTGA--G------TGT-ATAAAAAC-GTA--TTTTCAACCT-TTT-TTCA---T--ATTTCTGGAAAA--AAGTTG----G-A-C-ATCTAGT------GT-AA---AGTTAAAAC-A-C-CAAAC---TATTATGAAAC---A-T-GAAAAACA---T--TCAG----TTGA-GA------AC-CTAAACTT-TTT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCAC-CGATATTGAAAA--------A----TTTAAT--TC---AAA-------------AT-GCGGACAGCAAC-C-GGAGTAAACAAAG----------GT------C---------A--TG---TGAAAGTTGTGTTA-TTTAAAATCTGTTTAATTTGTGTTAT-GAATA-AA----GACAAGAAGAG-A-AAATTATT-GCTTACCCATGAAGTT-C--AGAAATATTCCTTTCCTTGACTGACCACA-AATA-C-AAGTGCT---TGCAAATGACTTTTGA-G-AA---A--C--ATTGAAAA-TCTTAGAAG-CACTT-GTCTTTTACT-TGTACAAA-------A----AA-GGTT-AT-AT-CTACTCAA-TACA--ATATTTGATGTTGTTGTTCG-AAGAATTTGT-GTTGTTTTAG-CTAT--CCGATAATTGGTTTCAATAAGTTC-TAGA-GACTTA-TTTCATAATTAGGAGCA-TGCA-T--TTACAAGG--TAATAAGAA--ATT-GCAG---GGAAAAATCACAGAATTTAATCAAGAGACACCTAACACCT-CAATCTCAACA-AAAGCCAAAC-----TTAAGTTAA-GC--ATGGAG-G-T-TATTCA----GCATCGATCAC-AAAA--CA----AGGAT-CATAAGTATAT-AAT-A--TCGCATATTCAACA-----TTTT-CA-----ATA--TAT-GTCC------C--------C--CTG----------TAA-ATTTAAG--TTTCAATCGTAATAAAGAC---AAAA--ACAA---ATATTGTCTG-GTGCTTACTGTCTG---TTTTAATACTTTGTAATCATATGAATTAAAA-TCTGATAAAAA-TTAAATCAAGTGGTAGACAT-GG--GGTT--TTGTGGTAAATT----AACAGCCCTGTAACTCAT
gi|4 : atATCCAAAC----TATT-G-CAAATCCATCACAATTGATCTTAGATCAATTA-TT----TGTC--CCTATAAGAGAGTACCT------GTT-T-T--TACTATAG--CGA-T-AACTGG--AG-T--------GACGTG-A-TT--AAA-C-TAT--TA-T--A-ACT-ATT-T-----------------AATA-A---A-GTT--GGACCCCTGAC--CTG-AAAGAGC--AT--TAA--T-TT--CTACA-AAA-----GA-TGA-TAG-A--T-T--GTA--TTTC--AGTTCGG--AAAAATG-A--TT-TATTTC--------TTCAAAATTCA---TTTGAAAA-AT-AG-T-TGTA-TAC-G-TCCAAT-G-ATTAACATATG-TAA-ATT--A------ACGAGC-A-T--G-TGGTGAA----TTTTCGGCA-TTTTGC--G------TGT-ATAAAAAC-GTA-TTTTTGAACCT-TTT-TTCA---T--ATTCCTGGAAAA--ATGTTG----A-A-C-ATCTAGT------GTAAA---AGT-AAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAA--ACA-T--TCAG----TTCA-GA------TC-CTA----C-TTTTATTGCTTCAAAATCGTCTTGAAAAT-TAC--GAATTTTTAC-CAATATTG--AA--------ACA--T----T--TCGGCAAA-------------ATGGCGGAT-GCAAG-AGGGAGTAAACAAAGCG---------T------C---------A--TG---TGGTATTTGCGTTCTTTTAAAATCTGTTT-----GTGTTAT-GAATA-AAGAC----AAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATG-TCCTTTCCTTGACTGACCACA-AATA-C-AACTGCT---TGCAAATGACTTTTGG-GCAA---A-CC--ATTGAAAAT-CTTAGAAGCCA-TT-GTATTTTACT-TGTACAAA------CATTTTA---GTT-TATAT-CTACTCAA-TATA--TCATTTGATG-TGTTGTTGG-AAGAATTTGT-GTAGTTTTAG-CTATATCCGATAATTGGTTTGAATAAGATC-TAGA---CCCA-TTTCATAATTAGGAGCA-TGCATA--T------G--TAATAAGAA--ATTGGCAG---GGAAAAA-CAAAGAATTTAAC--AGTGACACCTAACATCT-CAGTTATAACA-AAAGCC--ACG----TTCAGTTAA-GC--ATGAAA-G-TGTATTCAT----CATC-ATCAC-AAAAT-CAT--GAGGAT-AATAAATATATCAATAA--TCGCATATTCAACATAT-TTTTT-CA-----ACA--TATAATCCCATCCTC--------C--CTA----------TAAGATTTAAG--TTT-CATCGTAATAAAGAC---
gi|5 : TATCCCA-CACTTTATTTG-CGG--CCATCA-G--TT--CGT-GAT--ATTA-TC--------AA---ATAA-ATGGAACCT----------T-T--TACTATAGGTCGACT-AACCGGGGA--T--------G-T-TG-A-TT--AAC-C-AAT--TA-T--A-ACTAGTT-TTCA--GCATTTATATAGAATACA---ATGTT--GGACCCA-GAC--AAG-AAAGAGC--AT---AA--T-TTATCTACA-AAA-----GAATGA-TATTA--TCT--TTA--TTTTCGAGTCCGG--AGAA-T--A--TTACATTGC--------TTCAAAATCTCATCTATGAATA-AG-AG-TGTGTA--A--G-TTCAAT-GTATTATCGT--GATAT-ATTTAAC-----ACGAAC-A-T--A-CGGTGAA----TTT-CGGCA-GTTTGGTAG------TTT-ATAAAAAC-TTA-TTTATCATCAC-TTT-TTCA---T--A-TTCTGGAAAATTAAGTTG----GAA-CAATCTA-T------GT-AA---AGTTAAAACTATC-CAAAC---TA-TATAATACTGAA-C-AAAAC--A---T--TCAGTACATTAA-GA------ACTCTT----T-TTG-ATTGC-TCAAAATCTCCTTGAAAATCTAATTGAA-TTTCAC-C-ATATTG--AATAAACATGA----T----TTATC---AAATATGAGCGAATGTATGGCGGAC-GCAAC-CGGGAGTAAACAA-------A--ACGT------C---------ATGTG---TGAAAGTTGTGTTATTTTAAAATCTGTTTAA-TTGTGTTAT-GAATA-AA----GACAAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATA-ACCTCTCCTTGACGGACCACA-AATA-C-AAGTGCT---TGCAAATGACTTTTGG-GC-A---AACCATATTGAAAA-TCTTAGAAGCCA-TT-GTCTTTTACT-TGTACAAAT-----CA----A
gi|5 : a----AA-GGTT-TA--T-CTACTCAA-TAAT--TCAATTGATG-TGTTGGGGGAAAGAATTTGT-tttnnnnnnnnnnnnnnnnnnnnnnnnncaaacaaggtttatctactcaataattcaattgatgtgttgggggaaagaatttgtagagt
gi|6 : atatcccacactttatttgcggccatcagttcgtgatattatcaaataaatggaaccttttactataggtcgactaaccggggatgttgattaaccaattataactagttttcagcatttatatagaatacaatgttggacccagacaagaaagagcataatttatctacaaaagaatgatattatctttattttcgagtccggagaatattacattgcttcaaaatctcatctatgaataagagtgtgtaagttcaatgtattatcgtgatatatttaacacgaacatacggtgaatttcggcagtttggtagtttataaaaacttatttatcatcactttttcatattctggaaaattaagttggaacaatctatgtaaagttaaaactatccaaactatataatactgaacaaaacattcagtacattaagaactctttttgattgctcaaaatctccttgaaaatctaattgaatttcaccatattgaataaacatgatttatcaaatatgagcgaatgtatggcggacgcaaccgggagtaaacaaaacgtcatgtgtgaaagttgtgttattttaaaatctgtttaattgtgttatgaataaagacaagaagagaaaatcattgcttacccatgaagttcagaaataacctctccttgacggaccacaaatacaagtgcttgcaaatgacttttgggcaaaccatattgaaaatcttagaagccattgtcttttacttgtacaaatcaatttnnnnnnnnnnnnnnnnnnnnnnnnncaaac---AACC--ATTGAAAAT-CTTAGAAGCCA-TT-GTTCTTTACT-TGTACAAA------CA----AA-GGTA-TATAT-CTACTCAA-TATA--TCATTTGATG-TGTTGTTGG-AAGAATTTGT-GTTGCTTTAG-CTAT--CTGATAATAGGTTTGAATAA-----------------TTTCATAATTAGGAGCA-TGCATT--C------G--TACTAAGAA--TTTGTCAGCTAGGGAAAA-CACGGAATTTAAC--AGTGACACCTAACACC-----------CA-GA--CCG-ACG----TTAAGTTAATGCCAATGGAAAG-T-TATTCATCATGCAT---TCAC-AAAAT-CAT--GAGGATTCATAAGTGTA-CAATAA--TCACATATTCAACATATGTTTTTGCAG----ACA--TATGATTC------C--------CGCCTG----------TAAGATTTAAG--TTTC-ATCGCATTCAAGAC---AAAAAATAAA---ATATTGTGCT-GTTT-TTCT-TCTG---TTTTAATACTTTGTAATCATATGAATTAAAA-TCTGATAAAAT-T-AAATCAAGGTGT-GA-ATGGG--GGTT--TTATGGTAAATT----AACATCCCTGTAACTCATTACTT---CCCTATTagagt
gi|6 : -TTAAATCAAGGTGT-GA-ATGGG--GTTT--TTAAGGTAAATT----AACATCCCTGTAATTCATTATTT---CCCTACTGTCACCA--AA-ATATCTCGCGTATTTAATTCATCTG--ATACGAACTACCTTT--A-GTCAACAA--GGATAGTCTCATTTAA--T-TGTCAAAACAGAGTTATAG-AACCGAATTAT--GACC-GAAGTAGTTGGATAaaatcaaggtgtgaatggggtttttaaggtaaattaacatccctgtaattcattatttccctactgtcaccaaaatatctcgcgtatttaattcatctgatacgaactacctttagtcaacaaggatagtctcatttaattgtcaaaacagagttatagaaccgaattatgaccgaagtagttggata
gi|7 : aaccattgaaaatcttagaagccattgttctttacttgtacaaacaaaggtatatatctactcaatatatcatttgatgtgttgttggaagaatttgtgttgctttagctatctgataataggtttgaataatttcataattaggagcatgcattcgtactaagaatttgtcagctagggaaaacacggaatttaacagtgacacctaacacccagaccgacgttaagttaatgccaatggaaagttattcatcatgcattcacaaaatcatgaggattcataagtgtacaataatcacatattcaacatatgtttttgcagacatatgattcccgcctgtaagatttaagtttcatcgcattcaagacaaaaaataaaatattgtgctgtttttcttctgttttaatactttgtaatcatatgaattaaaatctgataaaattaaatcaaggtgtgaatgggggttttatggtaaattaacatccctgtaactcattacttcccta-G-CGG--TCATCACG--TGA-CTT-CAGCGATTA-TT----TGTTTACCTATCA-AGAGTACCT------GTA-T-T--TACTATAGG-CGA-T-AACGGGG-AG-T--------G-TGTA-A-TT--AAA-C-CAT--TA-T--A-ACT-TTT-TTCA-TATATT-ATATAGAAAA-A---A-GTT--GGACCCCTGAC--CCG-AAAGAGC--AT--TAAT-T-T---CTACA-AAA-----GA-TAA-TAT-A--T-T--TTA--TTTC--AGTTCGGAAAAAAAAG-A--TT-TATTGCTTCAAAA-TTCA----------TTTGAAAA-AT-AG-TGTTTA-TAC-G-TCTAAT-T-TTTAGTGT--G-TAA-ATA--A------ACAAAC-ATT--T-TGGTGAA----TTTTCGGCATTTTTGC--G------TGT-AATAAAAC-GTATTTTTTCAACCTATTT-TTCA---TACATATCTGGAAAA--AAGTTG----G-A-C-ATCTAGT------GTAAA---AGTTAAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAATCA---T--TCAG----TTCA-GA------AC-CAA----CTTTT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCAC-AGATATTG--AA--------A----CA---T--TC---AAA-------------ATGGCGGAC-GCAACAAGGGAGTAAACAAAGCGATTA--GCGTCATTACC---------A--TG---TGAAAGTTGCGTTATTTTAAAATCT
gi|8 : taGC--A------TGT-ATAAAAAT-GTA-ATTTTCAACCT-TTT-TACA---T--ATTTCTAGAAAA--CTTTTG----G-A-C-ATCTAGTATAAGTGTAAA---AGTTAAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAA--AGTAT--TCAG----TTCA-GA------AC-CTA----C-TTTTCTTGCTTCAAAATT------AAAA--------AATTTTCAC-CGATATTG--AA--------ACTTAT----T--TC---AAA-------------GTGGTGGAT-GCAAG-CGGGAGTAAACAA-GC----ATTGCAT------TTAATTTTGTA--TA---TGTATGTAGTGCTATTTTAAAATCTGTTT-----GTGTTAT-GAATA-AAGAC----AAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATA-TCCTTCCCTTGACTGACCACA-AATA-C-AAGTGCT---TGTGAATGGCTTTTAG-GC-A---AATC--ATTGAAAA-GCTTAGAAGCCA-TT-GTCTTTTACT-TGTACAAA------CA----AA-GGT-----------------TATA--TCAC---A----GTTGTTGG-AAGAATTGGT-GTTGTGTTAG-CTA
gi|9 : tatgTATCCAC-C----TTAT-G-TG---CCATCACG---GA-TTT-GATCAATTAATTGGTGTGTTGACCTATTA-AG-GTACCT------GTA-T-TATTACTATAGG-CCA-TCAACGGCGGAG-T--------G-TGTGCA-TTGAAAA-CATAT--TC-TCTA-ACG-TTT-TTCA-TGCATT-TAATAGAATA-AGGGA-GTTA-GGCCCCCTGATAGCTG--ACGAGTCGATTCTAA--T-T---TCATA-AAACATGGAA-TGA-TAT-A--T-TTCTTA--TTT---AG---GG--AAAATTG-AATTT-TATTGCTATGTAAATTCT----------CTTGAAAACATCAGTTGTGTATTACTG-TTCAATCG-ATAAACGT--G-TAAGAAT--A------ATGAGCAA-TGAT-TGGTGAATCTGTTTTCGG-A--TTTGC--GGTCTTCTGTCATAAAAAC-ATG--TTTGCACTGT-TTT-ATTG---T--TTTTTTGG--AA--AAGTT---------C-ATCTAGT------GTAAA---attgg
blockSeqs : A ACTT T . AT ATT TC A TGA A GGTGT TT G CATACA A A AT T C C AAGTTGGGATAT A C . TT . A AC . CT . A C . TATATAG AGGG T A AG . CG TCT AT A TAT . CATGG A . T . C TC AG CG AA GA AT A TTCAAAATCTCATC CATC T T CT T GT C T A AT A G TA CATTTA A T GAT TCTG TT GGTCTTC C . TT A A CTG AC TT TTTA A . A ATAAGT A TAT T T T G . T TGA T . AGTA AA TACA T . T AACTT TA A C TT G AATAAACATGAT TA GGC TATGAGCGAATGT A AAG AGCGATTAGCGTCATTACC TG . T AAT . C GACTG . . . . . T T . . . . . CAATAT G AT TT C C . . T TTTT . TTATA . . . T TGT A G . AT TA A . GGA C . T TTACAAGG TG CTA A T CA T TCCA T . ACGTTAA T CA A T G TCATGCAT . T T T G AA TATG G G . A CATCCTCCCTA G . TC A . AATAAA CTG T C G T T T . . A A C . . A A . T . C . . . C TAGT A CC ATTTAA A . T . .
blockSeqs : . . . . . G C . GCG . T TT . . . . . . . . GAGT . . . GA . . . . . . . . . ATATTA CA . . . . . T T . T . . . . . . . . . . . G . . TATGTAAATTCT GT . . C . CC . . A . . . . C . . G . T TAG . . A . . . . . . . . . . A . T . . . . . . . . ACA . . . . . CT TC G . . . AAAAATTTAA . . . . CG GCATTGCATTTAATTTTGT . . T AA . . GAC . . . . . . T . . . . . AATAT A . TT C T . . . . . ATATA . . . T GT . . . . TA T . GA T . . TTACAAG . . A . . A TCA T . AAAC . . . . . TGCATCA . T T . A AA TAT . . . A CCGCCTG G . CA A . ACAA GCT . A . T T T . . T . . . . T A . G . . . . . C TACG T . A . . A . .
blockSeqs : . . . . . T T . TCA . T TC . . . . . . . . GAGT . . . . . . . . . . . . . ATATAC T . . . . . T . . . . . . . . . . . . . . G . . TTCAAAATTCA AG . . C . GA . . G . . . . . . . G . T A . . T . . . . . . . . . . A . T . . . . . . . . ACA . . . . . CT C G . . . AAACTTAT . . . . AG AGCGCTTAGCGTC . . C AA . . GAC . . . . . . T . . . . . CAA A . T C C . . . . . TATA . . . T TG . . . . TA A . . C . . TG . . A . . T TCA A . GACG . . . . . GCATCGA . T T . A A TT . . . G CCCTG G . C T . CA T . T . . T . . . T . . . . T A . T . . . . . TAGT A . A . . T . .
blockSeqs : . . . . . T C . GCG . T TT . . . . . . . . AGT . . . . . . . . . . . . . ATATAG A . . . . . T . . . . . . . . . . . . . . G . . TTCAAAATTCA GC . . C . TC . . G . . . . . . . T . T A . . T . . . . . . . . . . A . T . . . . . . . . TCA . . . . . C A G . . . AAACAT . . . . CG AGCGTC . . T . . . G . . . . . . G . . . . . AA A . T C . . . . . . TTGA . . . A TG . . . . T . . . . . . CG . . G . . T . . . ACG . . . . . TCATCA . . . . A A . . . . . CCCTG . . C . . . . . . . . A . . T . . . . . A . . G . .
blockSeqs : . . . . . T C . TCA . T TG . . . . . . . . AAT . . . . . . . . . . . . . TAATAG A . . . . . T . . . . . . . . . . . . . . G . . TTCAAAATTCA AT . . T . CC . . T . . . . . . . A . T G . . T . . . . . . . . . . A . T . . . . . . . . A . . . . . C A T . . . AAACA . . . . CG AACGTC . . C . . . G . . . . . . T . . . . . CA A . T C . . . . . . TATA . . . T TG . . . A .
blockSeqs : . . . T C . CT . T A . . . . . . . . AGT . . . . . . . . . . . . . ATTAG A . . . . . T . . . . . . . . . . . . . . G . . TCAAAATTTA TA . . G . TC . . A . . . . . . . G . G G . . A . . . . . . . . . . A . T . . . . . . . . A . . . . . C A G . . . . . . . . C AGGTC . . T . CA . . T C . . . . . . TTA . . . C . . .
blockSeqs : . T . T . T C . . . . . . . . GAT . . . . . . . . . . . . . . A . . . . . T . . . . . . . . . . . . . . . . . TTCA AT . . C . CT . . T . . . . . . . A . . G . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . T A . . . G . . . . . . . . . .
blockSeqs : . . A . . . . . . . . AGT . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TTCA AG . . C . TC . . G . . . . . . . T . A . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . C . .
blockSeqs : . . . A . . . . . . . . . . . . . . . . TTCA AT . . . . T . . A . . . . . . . . . . . . .
blockSeqs : TCA . . . . . . . .
blockSeqCons : C* T**** ****** AGT********** ATATAG* A**** ** T** ** TTCAAAATTCA*********** G*** *** **** ****** C***** AAACAT**************** CG* AGCGTTAGTC******************** *** AA* ** *** CA**** ** T* ****** TATA** ** TG* TA GG* CG********** TCA* ACG****** TCATCA***** T* T** A*** TT** ***** ** CCCTG************************** ** C* *** ** ** **** ** TAGT*** A******* **
originalCons : TATCCAA-C----TATT-G-CGG--CCATCACG--TGA-CTT-GATCGATTA-TT----TGTTNACCTATTA-AGAGTACCT------GTA-T-T--TACTATAGG-CGA-T-AACGGGGGAG-T--------G-TGTG-A-TT--AAA-C-TAT--TA-T--A-ACT-TTT-TTCA-TGCATT-ATATAGAATA-A---A-GTT--GGACCCCTGAC--CTG-AAAGAGC--AT--TAA--T-T---CTACA-AAA-----GA-TGA-TAT-A--T-T--TTA--TTTC--AGTTCGG--AGAAATG-A--TT-TATTGC--------TTCA----------TTTGAAAA-AT-AG-TGTGTA-TAC-G-TTCAAT-G-ATTAGCGT--G-TAA-ATT--A------ACGAGC-A-T--N-CGGTGAA----TTTTCGGCA-TTTTGC--G------TGT-ATAAAAAC-GTA-TTTTTCAACCT-TTT-TTCA---T--ATTTCTGGAAAA--AAGTTG----G-A-C-ATCTAGT------GTAAA---AGTTAAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAA--A---T--TCAG----TTCA-GA------AC-CTA----C-TTT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCAC-CGATATTG--AA--------A----T----T--TC---AAA-------------ATGGCGGAC-GCAAC-CGGGAGTAAACAAAGCG---A--GCGT------C---------A--TG---TGAAAGTTGCGTTATTTTAAAATCTGTTTAA-TTGTGTTAT-GAATA-AAGAC-GACAAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATA-TCCTTTCCTTGACTGACCACA-AATA-C-AAGTGCT---TGCAAATGACTTTTGG-GCAA---AACC--ATTGAAAATTCTTAGAAGCCACTT-GTCTTTTACT-TGTACAAA------CA----AA-GGTT-TA-AT-CTACTCAA-TATA--TCATTTGATG-TGTTGTTGG-AAGAATTTGT-GTTGTTTTAG-CTAT--CCGATAATTGGTTTGAATAAGATC-TAGAGGACCTA-TTTCATAATTAGGAGCA-TGCATT--TTACAA-G--TAATAAGAA--ATTGGCAG---GGAAAAA-CACAGAATTTAAC--AGTGACACCTAACACCT-CAATTTCAACA-AAAGCC--ACG----TTAAGTTAA-GC--ATGGAG-G-T-TATTCAT---GCATC-ATCAC-AAAAT-CAT--GAGGAT-CATAAGTATATCAATAA--TCGCATATTCAACATAT-TTTTT-CA-----ACA--TATAATCC------C--------C--CTG----------TAAGATTTAAG--TTTCCATCGTAATAAAGAC---AAAA--CAAA---ATATTGTGCC-GTGC-TNCT-TCTG---TTTTAATACTTTGTAATCATATGAATTAAAA-TCTGATAAAAT-TNAAATCAAGGTGT-GA-ATGGG--GGTT--TTAAGGTAAATT----AACATCCCTGTAACTCATTACTT---CCCTACTGTCACCA--AA-ATATCTCGCGTATTTAATTCATCTG--ATACGAACTACCGTT--A-GTCAACAA--GGATAGTCTC-----A--T-TGTCAAAACAGAGTTATCG-GACCNAATTAT--GACC-GAAATAGTTGGATA
finalCons : TATCCAA-C----TATT-G-CGG--CCATCACG--TGAC-TT-GATCGATTA-TTT----GTTNACCTATTA-AGAGTACCT------GTA-T-T--TACTATAGG-CGA-T-AACGGGGAGT----------G-TGTG-A-TT--AAA-C-TAT--TA-T--A-ACT-TTT-TTCA-TGCATTATATAG-AATAA----A-GTT--GGACCCCTGAC--CTG-AAAGAGC--ATT--AA--T-T---CTACA-AAA-----GA-TGA-TAT-A--T-T--TTA--TTTC--AGTTCGG--AGAAATG-A--TT-TATTGCTTCAAAATTCA-----------TTTGAAAA-AT-AG-TGTGTA-TAC-G-TTCAAT-G-ATTAGCGT--G-TAA-ATT--A------ACGAGC-A-TG---CGGTGAA----TTTTCGGCA-TTTTGC--G------TGT-ATAAAAAC-GTA-TTTTTCAACCT-TTT-TTCA---T--ATTTCTGGAAAA--AAGTTG----G-A-C-ATCTAGT------GTAAA---AGTTAAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAA--A---T--TCAG----TTCA-GA------AC-CTAC-----TTT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCAC-CGATATTGAAACAT----------------T--TC---AAA-------------ATGGCGGAC-GCAACCG-GGAGTAAACAAAGCGTTAGTC--------------------A--TG---TGAAAGTTGCGTTATTTTAAAATCTGTTTAA-TTGTGTTAT-GAATA-AAGAC-GACAAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATA-TCCTTTCCTTGACTGACCACA-AATA-C-AAGTGCT---TGCAAATGACTTTTGG-GCA----AACC--ATTGAAAAT-CTTAGAAGCCACTT-GTCTTTTACT-TGTACAAA------CA----AA-GGTTATA--T-CTACTCAA-TATA--TCATTTGATG-TGTTGTTGG-AAGAATTTGT-GTTGTTTTAG-CTAT--CCGATAATTGGTTTGAATAAGATC-TAGAGG-CCTA-TTTCATAATTAGGAGCA-TGCATTCG----------TAATAAGAA--ATTGGCAG---GGAAAAA-CACAGAATTTAAC--AGTGACACCTAACACCTCA-ATTTCAACA-AAAGCCACG------TTAAGTTAA-GC--ATGGAG-G-T-TATTCATCATCA-----TCAC-AAAAT-CAT--GAGGAT-CATAAGTATATCAATA---TCGCATATTCAACATT--TTTTT-CA-----ACA--TATAATCCCCCTG--------------------------TAAGATTTAAG--TTTC-ATCGTAATAAAGAC---AAAA--CAAA---ATATTGTGCC-GTGC-TNCT-TCTG---TTTTAATACTTTGTAATCATATGAATTAAAA-TCTGATAAAAT-TNAAATCAAGGTGT-GA-ATGGG--GGTT--TTAAGGTAAATT----AACATCCCTGTAACTCATTACTT---CCCTACTGTCACCA--AA-ATATCTCGCGTATTTAATTCATCTG--ATACGAACTACCGTTAGT---CAACAA--GGATAGTCTCA-------T-TGTCAAAACAGAGTTATCG-GACCNAATTAT--GACC-GAAATAGTTGGATA
Alignments
lowQualScore : 1111 11111 111111 222222222 11 1111111 11111 11 11 111 11111 111111 111 111111111 11 111111 111111 1111 111111 111111 11 111 3333333333333 111 3333333333333 1111 6666666666666666666666 111 22222 111 1111111111111 11 1 111111 1111 11 222 6666666666666666 11 111 11 222222222 11 111 111 222 3333 22222 11 5555555555555555555555555555555 222 111 333333333 2222 1 1 2222 1 1 11 11 1111 111 11 1 11 1111111 11 11111111 11
lowQualScore : 6 4444 5 5 77 777 55 5 666 4 11111 66 4 777777 4 4 66 4 4 4 4 4 4 000000000 4 4 4 11 4 4 55 4 66 4 4 4 4 0000000 77777 4 00 66 4 66 888 00 4 222 4 11111 4 4 4 55 4 55 55 55 55 0 66 55 3 3 3 3 55 4444 3 7 55 7 11 7 3 0 55 3 4 111111 66 4 4 4 222 9999 55 666666666 4 4 22 4 4 666 55 55 0 7777 3 3 3 000000 3 777 1 4 4 4 777 4 777 4 4 777777 66 3333 4 222222 4 777777 00 1 5 77 5 000 7777777777777 000 1111111111111 5 777 2222 4444444444444444444444 1 333 6 6 88888 6 6 6 6 99 6 3 6 6 6 111 2222222222222 2 33 5 66 2 7 5 5 999999 777 5 5 0 66 5 2222 5 00 0 5 5 6 99 0 0 11 1 8 444 1 8 8 0 5555555555555555 0 11 444 3 8 0 11 1 9999 1 8 0 666666666 8 11 8 8 8 8 0 111 8 8 88 111 8 3 0 8 222 0 0000 88888 11 3 2222222222222222222222222222222 3 222 8 6 0 444 222222222 3333 0 1 0 0000 3 3 0 8 8 8 6 11 11 1 3 7777 5 777 6 33 0 0 0 11 0 5 6666666 1 11 66666666 6 8 1 11 8
lowQualScore : . .... . . .. ... .. . ... . ..... .. . ...... . . .. . . . . . . ......... . . . .. . . .. . .. . . . . ....... ..... . .. .. . .. ... .. . ... . ..... . . . .. . .. .. .. .. . .. .. . . . . .. .... . . .. . .. . . . .. . . ...... .. . . . ... .... .. ......... . . .. . . ... .. .. . .... . . . ...... . ... . . . . ... . ... . . ...... .. .... . ...... . ...... .. . . .. . ... ............. ... ............. . ... .... ...................... . ... . . ..... . . . . .. . . . . . ... ............. . .. . .. . . . . ...... ... . . . .. . .... . .. . . . . .. . . .. . . ... . . . . ................ . .. ... . . . .. . .... . . . ......... . .. . . . . . ... . . .. ... . . . . ... . .... ..... .. . ............................... . ... . . . ... ......... .... . . . .... . . . . . . . .. .. . . .... . ... . .. . . . .. . . ....... . .. ........ . . . .. .
lowQualScore : 7 2222 7 7 99 000 22 0 888 4 33333 11 4 222222 4 4 11 0 0 0 0 0 0 000000000 0 0 0 00 0 0 55 4 11 4 4 4 4 3333333 77777 4 66 11 4 11 000 66 4 222 4 11111 4 4 4 55 0 55 55 55 55 5 55 00 6 6 6 6 00 3333 6 3 22 3 11 3 6 4 00 6 0 555555 11 4 4 4 444 4444 11 000000000 4 4 11 4 0 444 00 00 3 7777 6 6 6 555555 2 000 9 4 4 4 888 4 888 4 4 111111 11 9999 4 888888 4 444444 77 4 7 99 7 000 6666666666666 000 4444444444444 7 111 1111 1111111111111111111111 4 000 7 7 33333 7 7 7 7 22 7 2 7 7 7 777 1111111111111 2 88 0 99 5 0 0 0 444444 888 0 0 4 99 0 0000 1 00 7 7 7 7 22 8 8 66 0 0 222 4 0 0 8 0000000000000000 8 00 000 8 0 8 00 4 4444 0 0 8 888888888 0 00 0 0 0 0 8 000 0 0 88 888 0 8 8 0 000 8 8888 00000 00 8 2222222222222222222222222222222 2 000 0 0 8 000 555555555 2222 0 0 0 8888 2 2 0 0 8 0 0 00 00 4 8 0000 6 555 7 88 0 8 8 00 8 0 2222222 0 00 88888888 7 0 0 00 0
consensus : TATCCAA-C----TATT-G-CGG--CCATCACG--TGA-CTT-GATCGATTA-TT----TGTTNACCTATTA-AGAGTACCT------GTA-T-T--TACTATAGG-CGA-T-AA-CGG-GG-AG---------TG-TGTG-A-TT--AAA-C-TAT--TA-T--A-ACT-TTT-TTCA-TGCATT-ATATAGAATA-A---A-GTT--GGACCCCTGAC--CTG-AAAGAGC--AT--TAA--T-T---CTACA-AAA-----GA-TGA-TAT-A--T-T--TTA--TTTC--AGTTCGG--AGAAATG-A--TT-TATTGCT-TCAAAAT-TCA-TTT--GAAAA-AT-AG-TGTGTA-TAC-G-TTCAAT-G-ATTAGCGT--G-TAA-A------TT--A-ACGAGC-A-TG--CGGTGAA----TTTTCGGCA-TTTTGC--G------TGT-ATAAAAAC-GTA-TTTTTCAACCT-TTT-TTCA---T--ATTTCTGGAAAA--AAGTTG----G-A-C-ATCTAGT------GTAAA---AGTTAAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAA--A---T--TCAG----TTCA-GA------AC-CTA----C-TTT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCAC-CGATATTG---AAAC--AT----T---TC---AAA-------------ATGGCGGAC-GCAAC-CGGGAGTAAACAAA----GCG-TT-A--G--------TC----ATGTGAAAGTTGCGTTATTTTAAAATCTGTTTAA-TTGTGTTAT-GAATA-AAGAC-GACAAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATA-TCCTTTCCTTGACTGACCACA-AATA-C-AAGTGCT---TGCAAATGACTTTTGGGC---A---A----ACC--ATTGAAAA-T--CTTAGAAGCCACTT-GTCTTTTACT-TGTACAAA------CAA---A-GGT-TATA--TCTACTCAA-TATA--TCATTTGATG-TGTTGTTGG-AAGAATTTGT-GTTGTTTTAG-C--TATCCGATAATTGGTTTGAATAAGATC-TAGAGGACCTA-TTTCATAATTAGGAGCA-TGCATTT---A-G----------TAATAAGAA--ATTGGCAG---GGAAAAA-CACAGAATTTAAC--AGTGACACCTAACACCT-CAATTTCAACA-AAAGCC--ACG----TTAAGTTAA-GC--ATGGAG-G-T-TATTCAT-CAT-C-AT-CAC-AAAAT-CAT--GAGGAT-CATAAGTATATCAAT-AA--TCGCATATTCAACATA--TTTTTTCA-----ACA--TATAATCC------C--------C--CTG----------TAAGATTTAAG---TTTC-ATCGTAATAAAGAC---AAAA--CAAA---ATATTGTGCC-GTGC-TNCT-TCTG---TTTTAATACTTTGTAATCATATGAATTAAAA-TCTGATAAAAT-TNAAATCAAGGTGT-GA-ATGGG--GGTT--TTAAGGTAAATT----AACATCCCTGTAACTCATTACTT---CCCTACTGTCACCA--AA-ATATCTCGCGTATTTAATTCATCTG--ATACGAACTACCGTT--A-GTCAACAA--GGATAGTCTC-----A--T-TGTCAAAACAGAGTTATCG-GACCNAATTAT--GACC-GAAATAGTTGGATA
Reference ( family-1174 ) : TATCCAA-C----TATT-G-CGG--CCATCACG--TGA-CTT-GATCGATTA-TT----TGTTNACCTATTA-AGAGTACCT------GTA-T-T--TACTATAGG-CGA-T-AA-CGG-GG-AG---------TG-TGTG-A-TT--AAA-C-TAT--TA-T--A-ACT-TTT-TTCA-TGCATT-ATATAGAATA-A---A-GTT--GGACCCCTGAC--CTG-AAAGAGC--AT--TAA--T-T---CTACA-AAA-----GA-TGA-TAT-A--T-T--TTA--TTTC--AGTTCGG--AGAAATG-A--TT-TATTGCT-TCAAAAT-TCA-TTT--GAAAA-AT-AG-TGTGTA-TAC-G-TTCAAT-G-ATTAGCGT--G-TAA-A------TT--A-ACGAGC-A-TG--CGGTGAA----TTTTCGGCA-TTTTGC--G------TGT-ATAAAAAC-GTA-TTTTTCAACCT-TTT-TTCA---T--ATTTCTGGAAAA--AAGTTG----G-A-C-ATCTAGT------GTAAA---AGTTAAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAA--A---T--TCAG----TTCA-GA------AC-CTA----C-TTT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCAC-CGATATTG---AAAC--AT----T---TC---AAA-------------ATGGCGGAC-GCAAC-CGGGAGTAAACAAA----GCG-TT-A--G--------TC----ATGTGAAAGTTGCGTTATTTTAAAATCTGTTTAA-TTGTGTTAT-GAATA-AAGAC-GACAAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATA-TCCTTTCCTTGACTGACCACA-AATA-C-AAGTGCT---TGCAAATGACTTTTGGGC---A---A----ACC--ATTGAAAA-T--CTTAGAAGCCACTT-GTCTTTTACT-TGTACAAA------CAA---A-GGT-TATA--TCTACTCAA-TATA--TCATTTGATG-TGTTGTTGG-AAGAATTTGT-GTTGTTTTAG-C--TATCCGATAATTGGTTTGAATAAGATC-TAGAGG-CCTA-TTTCATAATTAGGAGCA-TGCATTC-----G----------TAATAAGAA--ATTGGCAG---GGAAAAA-CACAGAATTTAAC--AGTGACACCTAACACCT-CAATTTCAACA-AAAGCC--ACG----TTAAGTTAA-GC--ATGGAG-G-T-TATTCAT-CAT-C-AT-CAC-AAAAT-CAT--GAGGAT-CATAAGTATATCAAT-A---TCGCATATTCAACAT---TTTTTTCA-----ACA--TATAATCC------C--------C--CTG----------TAAGATTTAAG---TTTC-ATCGTAATAAAGAC---AAAA--CAAA---ATATTGTGCC-GTGC-TNCT-TCTG---TTTTAATACTTTGTAATCATATGAATTAAAA-TCTGATAAAAT-TNAAATCAAGGTGT-GA-ATGGG--GGTT--TTAAGGTAAATT----AACATCCCTGTAACTCATTACTT---CCCTACTGTCACCA--AA-ATATCTCGCGTATTTAATTCATCTG--ATACGAACTACCGTT--A-GTCAACAA--GGATAGTCTC-----A--T-TGTCAAAACAGAGTTATCG-GACCNAATTAT--GACC-GAAATAGTTGGATA
gi|1 : TATCCAA-C----TATT-GTCGG--TCATCACG--TGA--TT-GATCAATCA-TT-----GTTACCCTATTA-A-AGTACCTT-----GTA-T-T--TACTATAG--C-A-T-AAACGG-GG-AGC--------TG-CGTG-AATT--AAAAC-TAT--TAAT--AGACT-TTT-TTCAATGCATT-ATACA-AATA-ATA-A-GTTTAGGACCCCTGAC--CTGGAAAAAGC--AT---AA--T-T---CTACAGAAA-----GA-TGAATCT-GACT-T--TTA--TTCA--GGTTAGG--AGACATG-A--TT-TATTGCT-TCAAAAT-TCGCTTT--GAAAA-AT-AG-TGTGTAGTAG-GATTCAAT-G--CTAGCGT--G-TAA-A------TT--A-ACGAGC-A-TTT-CGTTGAA----TTTTCGGCA-TTTTGG--A------TGT-ATAAAAACGGTA-TTTTTCAACC--TGT-TTCA---T--ATTTCTGGGAAA--AAG-AG----G-ACC-ATCTAGT------GTAAA---AGTTAAAAC-A-C-TAAATAGATA-TATGAAAC---A-TAGAAAA--A---T--TCAGC---TTCA-GAGAACGCAT-CTA-------TT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--TAATTTTTAC-CGATATTG---GAAA--ATGATCT---TC---TAA-------------A-GGCGGAC-GCAAC-C-GGAGTAAACAAA----ACG-TC-A-----------TG----ATATGACAGTTGTGTTATTTTAAAATCTG-TTAA-TTGTGTTATGGAATA-GAAA--GACAAGAAGAGTACAAATCATTCGCTTACC--TAAGGTTGCGAAGAAATA-ACCTCTCCTTGAC-GACCACAGAATAGCAAAGTGCTAAATGCAA--GACTT---GGCGCTA---A----ACCAAATTGAAAA-TGGC-TAGAAG-CGCTTCGTTTTATACTATGATCAAATCAATTTAA---ATGGT-TATAATCCTACTCAAGTACAAGTCA-TTGAT--TGTTGTTGG-AAAA---TGT--TTGTTTTAGCC--TATTCGAT-ATTCGTTGGAA-AAGATCTTAGAGGACTTATTTTCATAATATGGAGCA-TGCA-TC-----GATTACAAGATCAATAAGAA--ATTGGCAG---GG-AAAA-CACAAA--TTAAC--AGAGACACCTAACACCT-C-ATTTCAACACAAAGTC---CG----TTAAGTTAA-GC--AT-GAG-G-T-TATTCAT-C------T-CACAAAAATACATGCGAGGAT-CAT-AGTATATCAAT-AAGGGCGC-TATTCAACATA--TTTTTTCAAATATACATGTATAATCC------CCCCCCCCAC--CTGTAAAACTTGTTAAAATTTAAGGATTTCC-TTTGTAATAAAGACTTAAAAA--CAAGCGCATATTGTGCCTGTGC-TACT-TCTGATATTTAAATACTTTGTAA-AATATGAATTAAAATTCTGATAAAATATGATGCAAAGGTGT-TAGATGGGCTGGTTTGTTAA-GTGAGTTATTAAACA-CCCTGTAGCTCATTACTTAAATTCTACTGTCACCAGTAACATTTTTTGCGTA-TTA--TCATCTGATATACGAACTACCGTTTGA-GTCAACAA--GGATAGTCTC-----ATTT-TGTGAAAACAGAGTTATCGAGACCAAATTATGGGACCAAAAATAGTTGGA
gi|10 : aCGTCACG--GGA-CTT-AA-CTATTA-TT----TGT-AACCTAGTG--GACTGTTTCATACAGTT-TAT--TACAATAGG-CGA-------GG-GG-AAGTTGGGATATG-TGTA-A-TTTTAAA-C-TATACGA-T--A-ACT-TTTCTTCA-TACGTT---------TA------------GGAC-----GC--CTA-AATGA----AT--TAT--T-T---CGACA-AAA--------------------------------C--AGT---------AGT-----TT-CCTTGCT-TCAAAAT-TCA-TTT--GAAAA-GT-AG-TGTATT-TTC-G-TGTAAT-A-ATCTACGT--A-CAA-ATTACATTT--A-ACGAGC-A-TG--TGGTGAT----GTTTGGGGA-TAGAGC--A------TGC-ATAAAAAC-GGA-ATTTTCAACTT-TTTATTCA---T--ACTTCTGGAA-------TTGTTTAG-A-C-ATATAG---------------AG-TAAAAC-A-G-CACAC---TA-TATCAAAC---ATT-AAAAA--A---A--TCAA----TCCATG--------C-CTA----CTTTT-CTTACTTCAAat
gi|11 : TATCCAA-C----TATT-G-CGG--CCATCACG--TGA-TTT-GATGAATTA-TT----TGTTTACCTATTA-AGAGTACTT------GTA-T-T--TACTATAGG-CGA-T-AA-CGA-GG-A-----------G-TGTG-A-TG--AAA-C-TAT--TT-T--A-ACT-TTT-TTCA-TCCATG-ATATTAAATA-T---A-G-T--GGACCCCTGAC--TTG-AAAGAGC--AT--TAC--TAT---CTACA-AAA-----GA-TGA-TAT-A--T-T--TTA--TTTC--AATTCGG--AAATATG-A--TT-TATTGCT-TCAAAAT-TCA-TTT--TAAAA-AG-A---GTGTA-TAC-G-TCCAAT-G-ATTAACGT--G-T
gi|12 : TT-TTCACTGT--ATTTCTGAAAAT--CTTTTG----G-A-C-ATGAAAT------ATATATATAGT----AC-A-CGTA--C---TG-CATGAAAC---A-T-AACAA--A---TAATCAA----TCCA-GG------GC-CTA----C-TTT--TTTCTTCAAAATCATCTT
gi|13 : --AA-ATATCTCGCGTATTTAATTCAACTG--GT--GAACTACCGTT--A-GTCAACAA--GGATAGTCTC-----A--T-TGTCAAAACAGAGTTATCG-AACCTAATTAT--GACC-GAAATAGTTGGAT
gi|14 : --T-T--TTA--TTTC--AGTTAGG--AGAAATG-A--TT-TATTGCT-TCAAAAT-TCC-NNN--NNNNN-NN-NN-NNNNNN-NNN-N-NNNAATCC-ACTAG-GC--G-TAA-A------T
gi|15 : --TT-TTTTGCT-TCAAAAT-TCA-TTT--GAAAA-GC-AG-TGATTA-CAC-G-TGAAAT-G-ATCAGAGT--A-TAA-A------TT--A-ACAAGC-A-TG--CGGTG-A----TTTT
gi|16 : ATGACTTTTGGGC---A---ATATAGTC--ATTGAAAT-T--CTTAGACGCCACT--GTCTTTTATC-TGTACAAA------CAA---A-GGT-TATA--TCTACTCAA-att
gi|17 : TATCTCGCGTATTTAATTCATCTG--ATACGAA-----GTT--ACG--AACTACCGTATAGTCTC-----A--T-TGTCAAA
gi|18 : GG-CGA-T-AA-CGG-GG-AG---------TG-TGTA-A-TT--AAA-C-TAT--
gi|19 : tatgtatcacgaaatctgactatttgaatcgtTCTT-----A--TATTTGAAAACAGAGTTATCG-GACCAAATTAT--GACC-AAAATAGTTGGATA
gi|2 : acTATCCAA-C----TATA-G-CGG--TCATTACG--TGA-CTT-AAGCGATTA-TT----TGTTTACCTATTA-AGAGTACCT------GTAAT-T--TACTATAGG-CG--T-AA-CGG-GGGAG---------TG-TGT--A-TT--AAA-C-CAT--TA-T--A-ACT-TTT-TTCA-TGCATT-AT-TAGAA-A-A---A-GTT--GGACCCCTGAC--CCG-AAAGAGC--AT--TAA--T-T---CTACA-AAA-----GA-TGA-TAT-A--T-T--TTA--TTTC--AGTTCGA--AAAAA---A--TT-TATTGCT-TCA---------TTT--GAAAA-AT-AG-TGTTTA-TAT-G-TT-AAT-G-ATTAGCGT--G-TAA--------TT--A-ACGAGC-A-TT--TGGTGAA----TTTTCGGCA-TTTTGC--A------TGT-ATAGAA-C-GTA-TTTTTCAACCT-TTT-TTCA---T--GTATCTGGAAAA--AAGTTG----G-A-C-ATCTAGA------GTAAA---AGTTAAAAC-A-T-TAAAC---TA-TATGAAAC---A-T-GAAAA--A---T--TCAG----TTCA-GA------AC-A-A----C-TTT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCACGCGATA------------------T---TC---AAA-------------ATGGCGGAC-GCCAC-CGGGAGTAAACAAA----GCGCTT-AGCG--------TC----ATGTGAATGTTGTGTTATTAT-AAATATGTTTAA-TTGTGTTAT-GAATACAAGACTGACAAGAA-AG-A-AAATCATT-GCTTA-CCATGAAGTT-C--AGAAATG-TCCTTTCCTTGACTGACCATA-AATA-C--AGTGCT---TGCAAATGACTTTTGGGA---ATATA----ATC--ATTGGAAATT--CTTAGAAGCCATTT-GTCTTTTATT-TGTACAAA------CAA---A-GGT-TTGA--TCTACTCAA-TATA--TCATTTGGGT-TATTGTT-G-AAGAATTTGTGGTTGTTTTAG-C--TATCCGATAATTGG-TTGAAT-CGATC-TAGAGGACCTA-TTTCATAATTATGAGCATTGCATTTTACAAG----------TAAT-AGAATGATTGGCA----GGAAAAA-CACAGAATTTAAC--AGTGACACCTAA-ACCTCCAATTTCAACA-AAAGCC--ACGTTAATTAAGTTAA-GC--ATGGAG-GTT-TATTCATGCAT-C-AT-CAC-AAAAT-CAT--GAGGAT-CATGAGTATATCAAT-A---TCGCATATTCAACAT---TTTTTTCA-----ACA--TGCAATTC------C--------C--CTG----------TAAGATTTAAGT--TTTC-ATTGTA--AAAG-C---AAAA--C--A---ATATTGT--T-GTGC-TCTT-TCTG----TTTAATACTTTGTAATCATATGAA-TAAAA-TCTGATCAAAT-TAAAATCAAGGTGT-GA-ATGGG--GATT--TTAAGGT-AATT----AACATCCCTGTAACTCATAACTT---CCCTACTGTCA-CA--AA-ATATCTCGCGTATTTAATTCATCTG--ATACGAACTA-CGT-----------------ATAGTCTC-----A--T-TGTCAAAACAGAGTTATCG-GACCTAATTAT--GACC-GAAATAGTTGGATA
gi|20 : A---T--GTATCTGGAAAA--AAGTTG----G-A-C-ATCTAGT------G
gi|3 : -TT----TGTTCTCCTATTA-AGAGTACCT------GTA-T-T--TACTATAGG-CGA-T-AA-CGG-GG-AA---------TG-TGTG-A-TT--AAA-C-TAT--TA-T--A-ACT-TTT-TTCA-TGCATT-ATATACAATA-A---A-GTT--GGACCCCTGAC--CTG-AAAGAAC--AT--TAAATT-T---CTACA-AAA-----GA-TG---AT-A--T-T--TTAAGTTTC--AGTTCGG--AG-AATGAA--TT-TATTGC--TCAAAAT-TTA-TTT--GAAAA-TA-AG-TGTGTA-TAG-GTTTCAAT-G-ATTATCGT--G-TAA-A------TT--A-ACGAAC-A-TA--CGGTGAA----TTTTCGGCA-TTTTGA--G------TGT-ATAAAAAC-GTA--TTTTCAACCT-TTT-TTCA---T--ATTTCTGGAAAA--AAGTTG----G-A-C-ATCTAGT------GT-AA---AGTTAAAAC-A-C-CAAAC---TATTATGAAAC---A-T-GAAAAACA---T--TCAG----TTGA-GA------AC-CTAAACTT-TTT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCAC-CGATATTG---AAAA--ATTTAAT---TC---AAA-------------AT-GCGGACAGCAAC-C-GGAGTAAACAAA----G---------G--------TC----ATGTGAAAGTTGTGTTA-TTTAAAATCTGTTTAATTTGTGTTAT-GAATA-AA----GACAAGAAGAG-A-AAATTATT-GCTTACCCATGAAGTT-C--AGAAATATTCCTTTCCTTGACTGACCACA-AATA-C-AAGTGCT---TGCAAATGACTTTTGAG----A---A----A-C--ATTGAAAA-T--CTTAGAAG-CACTT-GTCTTTTACT-TGTACAAA-------AA---A-GGT-TATA--TCTACTCAA-TACA--ATATTTGATGTTGTTGTTCG-AAGAATTTGT-GTTGTTTTAG-C--TATCCGATAATTGGTTTCAATAAGTTC-TAGAGA-CTTA-TTTCATAATTAGGAGCA-TGCATTTACAAGG----------TAATAAGAA--ATT-GCAG---GGAAAAATCACAGAATTTAATCAAGAGACACCTAACACCT-CAATCTCAACA-AAAGCCAAAC-----TTAAGTTAA-GC--ATGGAG-G-T-TATTCAG-CAT-CGAT-CAC-AAAA--CA----AGGAT-CATAAGTATAT-AAT-A---TCGCATATTCAACA------TTTTCA-----ATA--TAT-GTCC------C--------C--CTG----------TAA-ATTTAAG---TTTCAATCGTAATAAAGAC---AAAA--ACAA---ATATTGTCTG-GTGCTTACTGTCTG---TTTTAATACTTTGTAATCATATGAATTAAAA-TCTGATAAAAA-TTAAATCAAGTGGTAGACAT-GG--GGTT--TTGTGGTAAATT----AACAGCCCTGTAACTCAT
gi|4 : atATCCAAAC----TATT-G-CAAATCCATCACAATTGATCTTAGATCAATTA-TT----TGTC--CCTATAAGAGAGTACCT------GTT-T-T--TACTATAG--CGA-T-AA-CTG-G--AG---------TGACGTG-A-TT--AAA-C-TAT--TA-T--A-ACT-ATT-T-----------------AATA-A---A-GTT--GGACCCCTGAC--CTG-AAAGAGC--AT--TAA--T-TT--CTACA-AAA-----GA-TGA-TAG-A--T-T--GTA--TTTC--AGTTCGG--AAAAATG-A--TT-TATTTCT-TCAAAAT-TCA-TTT--GAAAA-AT-AG-T-TGTA-TAC-G-TCCAAT-G-ATTAACATATG-TAA-A------TT--A-ACGAGC-A-TG--TGGTGAA----TTTTCGGCA-TTTTGC--G------TGT-ATAAAAAC-GTA-TTTTTGAACCT-TTT-TTCA---T--ATTCCTGGAAAA--ATGTTG----A-A-C-ATCTAGT------GTAAA---AGT-AAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAA--ACA-T--TCAG----TTCA-GA------TC-CTA----C-TTTTATTGCTTCAAAATCGTCTTGAAAAT-TAC--GAATTTTTAC-CAATATTG---AAAC--AT----T---TCGGCAAA-------------ATGGCGGAT-GCAAG-AGGGAGTAAACAAA----GCG-T---------------C----ATGTGGTATTTGCGTTCTTTTAAAATCTGTTT-----GTGTTAT-GAATA-AAGAC----AAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATG-TCCTTTCCTTGACTGACCACA-AATA-C-AACTGCT---TGCAAATGACTTTTGGGC---A---A----ACC--ATTGAAAA-T--CTTAGAAGCCA-TT-GTATTTTACT-TGTACAAA------CATTTTA-GTT-TATA--TCTACTCAA-TATA--TCATTTGATG-TGTTGTTGG-AAGAATTTGT-GTAGTTTTAG-CTATATCCGATAATTGGTTTGAATAAGATC-TAGA---CCCA-TTTCATAATTAGGAGCA-TGCATAT-----G----------TAATAAGAA--ATTGGCAG---GGAAAAA-CAAAGAATTTAAC--AGTGACACCTAACATCT-CAGTTATAACA-AAAGCC--ACG----TTCAGTTAA-GC--ATGAAA-G-TGTATTCAT-CAT-C-AT-CAC-AAAAT-CAT--GAGGAT-AATAAATATATCAATAA---TCGCATATTCAACATA--TTTTTTCA-----ACA--TATAATCCCATCCTC--------C--CTA----------TAAGATTTAAG---TTTC-ATCGTAATAAAGAC---
gi|5 : TATCCCA-CACTTTATTTG-CGG--CCATCA-G--TT--CGT-GAT--ATTA-TC--------AA---ATAA-ATGGAACCT----------T-T--TACTATAGGTCGACT-AA-CCG-GG-GA---------TG-T-TG-A-TT--AAC-C-AAT--TA-T--A-ACTAGTT-TTCA--GCATTTATATAGAATACA---ATGTT--GGACCCA-GAC--AAG-AAAGAGC--AT---AA--T-TTATCTACA-AAA-----GAATGA-TATTA--TCT--TTA--TTTTCGAGTCCGG--AGAA-T--A--TTACATTGCT-TCAAAATCTCA-TCTATGAATA-AG-AG-TGTGTA--A--G-TTCAAT-GTATTATCGT--GATAT-A------TTTAACACGAAC-A-TA--CGGTGAA----TTT-CGGCA-GTTTGGTAG------TTT-ATAAAAAC-TTA-TTTATCATCAC-TTT-TTCA---T--A-TTCTGGAAAATTAAGTTG----GAA-CAATCTA-T------GT-AA---AGTTAAAACTATC-CAAAC---TA-TATAATACTGAA-C-AAAAC--A---T--TCAGTACATTAA-GA------ACTCTT----T-TTG-ATTGC-TCAAAATCTCCTTGAAAATCTAATTGAA-TTTCAC-C-ATATTGAATAAAC--ATGA--TTTATC---AAATATGAGCGAATGTATGGCGGAC-GCAAC-CGGGAGTAAACAAA----ACG-TC-A------------T----GTGTGAAAGTTGTGTTATTTTAAAATCTGTTTAA-TTGTGTTAT-GAATA-AA----GACAAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATA-ACCTCTCCTTGACGGACCACA-AATA-C-AAGTGCT---TGCAAATGACTTTTGGGC---A---A----ACCATATTGAAAA-T--CTTAGAAGCCA-TT-GTCTTTTACT-TGTACAAAT-----CAA---
gi|5 : aA---A-GGT-T-TA--TCTACTCAA-TAAT--TCAATTGATG-TGTTGGGGGAAAGAATTTGT-tttnnnnnnnnnnnnnnnnnnnnnnnnncaaacaaggtttatctactcaataattcaattgatgtgttgggggaaagaatttgtagagt
gi|6 : atatcccacactttatttgcggccatcagttcgtgatattatcaaataaatggaaccttttactataggtcgactaaccggggatgttgattaaccaattataactagttttcagcatttatatagaatacaatgttggacccagacaagaaagagcataatttatctacaaaagaatgatattatctttattttcgagtccggagaatattacattgcttcaaaatctcatctatgaataagagtgtgtaagttcaatgtattatcgtgatatatttaacacgaacatacggtgaatttcggcagtttggtagtttataaaaacttatttatcatcactttttcatattctggaaaattaagttggaacaatctatgtaaagttaaaactatccaaactatataatactgaacaaaacattcagtacattaagaactctttttgattgctcaaaatctccttgaaaatctaattgaatttcaccatattgaataaacatgatttatcaaatatgagcgaatgtatggcggacgcaaccgggagtaaacaaaacgtcatgtgtgaaagttgtgttattttaaaatctgtttaattgtgttatgaataaagacaagaagagaaaatcattgcttacccatgaagttcagaaataacctctccttgacggaccacaaatacaagtgcttgcaaatgacttttgggcaaaccatattgaaaatcttagaagccattgtcttttacttgtacaaatcaatttnnnnnnnnnnnnnnnnnnnnnnnnncaaac---A----ACC--ATTGAAAA-T--CTTAGAAGCCA-TT-GTTCTTTACT-TGTACAAA------CAA---A-GGTATATA--TCTACTCAA-TATA--TCATTTGATG-TGTTGTTGG-AAGAATTTGT-GTTGCTTTAG-C--TATCTGATAATAGGTTTGAATAA-----------------TTTCATAATTAGGAGCA-TGCATTC-----G----------TACTAAGAA--TTTGTCAGCTAGGGAAAA-CACGGAATTTAAC--AGTGACACCTAACACC-----------CA-GA--CCG-ACG----TTAAGTTAATGCCAATGGAAAG-T-TATTCAT-CATGC-ATTCAC-AAAAT-CAT--GAGGATTCATAAGTGTA-CAAT-AA--TCACATATTCAACATATGTTTTTGCAG----ACA--TATGATTC------C--------CGCCTG----------TAAGATTTAAG---TTTC-ATCGCATTCAAGAC---AAAAAATAAA---ATATTGTGCT-GTTT-TTCT-TCTG---TTTTAATACTTTGTAATCATATGAATTAAAA-TCTGATAAAAT-T-AAATCAAGGTGT-GA-ATGGG--GGTT--TTATGGTAAATT----AACATCCCTGTAACTCATTACTT---CCCTATTagagt
gi|6 : -TTAAATCAAGGTGT-GA-ATGGG--GTTT--TTAAGGTAAATT----AACATCCCTGTAATTCATTATTT---CCCTACTGTCACCA--AA-ATATCTCGCGTATTTAATTCATCTG--ATACGAACTACCTTT--A-GTCAACAA--GGATAGTCTCATTTAA--T-TGTCAAAACAGAGTTATAG-AACCGAATTAT--GACC-GAAGTAGTTGGATAaaatcaaggtgtgaatggggtttttaaggtaaattaacatccctgtaattcattatttccctactgtcaccaaaatatctcgcgtatttaattcatctgatacgaactacctttagtcaacaaggatagtctcatttaattgtcaaaacagagttatagaaccgaattatgaccgaagtagttggata
gi|7 : aaccattgaaaatcttagaagccattgttctttacttgtacaaacaaaggtatatatctactcaatatatcatttgatgtgttgttggaagaatttgtgttgctttagctatctgataataggtttgaataatttcataattaggagcatgcattcgtactaagaatttgtcagctagggaaaacacggaatttaacagtgacacctaacacccagaccgacgttaagttaatgccaatggaaagttattcatcatgcattcacaaaatcatgaggattcataagtgtacaataatcacatattcaacatatgtttttgcagacatatgattcccgcctgtaagatttaagtttcatcgcattcaagacaaaaaataaaatattgtgctgtttttcttctgttttaatactttgtaatcatatgaattaaaatctgataaaattaaatcaaggtgtgaatgggggttttatggtaaattaacatccctgtaactcattacttcccta-G-CGG--TCATCACG--TGA-CTT-CAGCGATTA-TT----TGTTTACCTATCA-AGAGTACCT------GTA-T-T--TACTATAGG-CGA-T-AA-CGG-GG-AG---------TG-TGTA-A-TT--AAA-C-CAT--TA-T--A-ACT-TTT-TTCA-TATATT-ATATAGAAAA-A---A-GTT--GGACCCCTGAC--CCG-AAAGAGC--AT--TAAT-T-T---CTACA-AAA-----GA-TAA-TAT-A--T-T--TTA--TTTC--AGTTCGGAAAAAAAAG-A--TT-TATTGCT-TCAAAAT-TCA-TTT--GAAAA-AT-AG-TGTTTA-TAC-G-TCTAAT-T-TTTAGTGT--G-TAA-A------TA--A-ACAAAC-ATTT--TGGTGAA----TTTTCGGCATTTTTGC--G------TGT-AATAAAAC-GTATTTTTTCAACCTATTT-TTCA---TACATATCTGGAAAA--AAGTTG----G-A-C-ATCTAGT------GTAAA---AGTTAAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAATCA---T--TCAG----TTCA-GA------AC-CAA----CTTTT-ATTGCTTCAAAATCGTCTTGAAAAT-TAA--GAATTTTCAC-AGATATTG---AAAC--A-----T---TC---AAA-------------ATGGCGGAC-GCAACAAGGGAGTAAACAAA----GCGATT-A--GCGTCATTACC----ATGTGAAAGTTGCGTTATTTTAAAATCT
gi|8 : taGC--A------TGT-ATAAAAAT-GTA-ATTTTCAACCT-TTT-TACA---T--ATTTCTAGAAAA--CTTTTG----G-A-C-ATCTAGTATAAGTGTAAA---AGTTAAAAC-A-C-TAAAC---TA-TATGAAAC---A-T-GAAAA--AGTAT--TCAG----TTCA-GA------AC-CTA----C-TTTTCTTGCTTCAAAATT------AAAA--------AATTTTCAC-CGATATTG---AAACTTAT----T---TC---AAA-------------GTGGTGGAT-GCAAG-CGGGAGTAAACAAGCATTGCA-TTTA--A--------TTTTGTATATGTATGTAGTGCTATTTTAAAATCTGTTT-----GTGTTAT-GAATA-AAGAC----AAGAAGAG-A-AAATCATT-GCTTACCCATGAAGTT-C--AGAAATA-TCCTTCCCTTGACTGACCACA-AATA-C-AAGTGCT---TGTGAATGGCTTTTAGGC---A---A----ATC--ATTGAAAA-G--CTTAGAAGCCA-TT-GTCTTTTACT-TGTACAAA------CAA---A-GGT-TATA--TC------A-CA----------------GTTGTTGG-AAGAATTGGT-GTTGTGTTAG-C--TA
gi|9 : tatgTATCCAC-C----TTAT-G-TG---CCATCACG---GA-TTT-GATCAATTAATTGGTGTGTTGACCTATTA-AG-GTACCT------GTA-T-TATTACTATAGG-CCA-TCAA-CGGCGG-AG---------TG-TGTGCA-TTGAAAA-CATAT--TC-TCTA-ACG-TTT-TTCA-TGCATT-TAATAGAATA-AGGGA-GTTA-GGCCCCCTGATAGCTG--ACGAGTCGATTCTAA--T-T---TCATA-AAACATGGAA-TGA-TAT-A--T-TTCTTA--TTT---AG---GG--AAAATTG-AATTT-TATTGCTATGTAAAT-TCT-CTT--GAAAACATCAGTTGTGTATTACTG-TTCAATCG-ATAAACGT--G-TAAGA------AT--A-ATGAGCAA-TGATTGGTGAATCTGTTTTCGG-A--TTTGC--GGTCTTCTGTCATAAAAAC-ATG--TTTGCACTGT-TTT-ATTG---T--TTTTTTGG--AA--AAGTT---------C-ATCTAGT------GTAAA---attgg