lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 33 11 222222 11111 2 222 22222 11 1 22222222 1111 11 11 11 11 22 11 11 222 111 22222 22 11 1 11 111111 1 11111 11 111 111 11 11 22222 1 111 22 1 222 333 111 1111 1 11 11 1 1 111 4444444 11 11111 11 333333333333333333333 1111111 2222222222 1111 11 1 1 1111111 11 11 111 1111 1111 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 6666666666666666666666666666 1111 22222222 22 33 1111 11111 1111 22222222222222222222 11 11 11 22222 11 22222 3333 11 11 1111111 1 1 2222222222222 333 444444444 1 1 11 11 1 1 1 11111111 1 1 11 4444444444 11 2 1 222222 111 33 1 1 1 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 33 6666 2222 22
lowQualScore : 88 11 0 333333 44444 4 8 222 0 0 0 77777 8 0 11 8 3 0 66666666 7777 11 0 8 99 0 555 8 8 33 8 8 11 3 22 8 5 66 8 5 0 8 99 8 5 0 8 8 000 8 8 444 22222 77 11 8 5 6 33 6 444444 6 6 1 3 6 11111 6 0 11 444 8 8 0 8 444 8 99 0 5 88 8 88 8 33333 3 8 8 8 6 777 0 00 0 6 0 8 8 8 8 8 8 8 444 6 6 1 3 6 6 6 6 6 888 111 4444 0 00 8 11 8 8 8 8 11 0 0 8 3 3 0 0 111 8 1 0000000 8 99 8 8 8 0 88 6 8 6 5 5 11111 33 2 2 999999999999999999999 5 5 5 1 8888888 77 1111111111 1 3333 77 5 0 5 5 4 22 5 0 5 66 5 0 66 888 5 0 5 66 1 5 0 5 1 3333333 888 11 22 0 33 5 3 1 000 0000 2222 55 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 5 5 888 0000000000000000000000000000 5 0000 33333333 99 1 2 3 6 22 6 22 2222 5 7 55555 3 666 0000 99 6 77777777777777777777 11 6 11 3 88 5 5 3 5 8 00000 11 11111 6 5 6 6 999 8888 8 11 33 3333333 6 0 66 2 0 2 3333333333333 3 444 000000000 5 3 0 88 2 2 3 33 9 0 5 99999999 0 0 33 3333333333 33 2 1 0 999999 1 8 8 6 111 8 99 3 11 2 2 2 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 00 1111 8888 6 33 6
lowQualScore : .. .. . ...... ..... . . ... . . . ..... . . .. . . . ........ .... .. . . .. . ... . . .. . . .. . .. . . .. . . . . .. . . . . . ... . . ... ..... .. .. . . . .. . ...... . . . . . ..... . . .. ... . . . . ... . .. . . .. . .. . ..... . . . . . ... . .. . . . . . . . . . . ... . . . . . . . . . ... ... .... . .. . .. . . . . .. . . . . . . . ... . . ....... . .. . . . . .. . . . . . ..... .. . . ..................... . . . . ....... .. .......... . .... .. . . . . . .. . . . .. . . .. ... . . . .. . . . . . ....... ... .. .. . .. . . . ... .... .... .. .......................................................................................................................... . . ... ............................ . .... ........ .. . . . . .. . .. .... . . ..... . ... .... .. . .................... .. . .. . .. . . . . . ..... .. ..... . . . . ... .... . .. .. ....... . . .. . . . ............. . ... ......... . . . .. . . . .. . . . ........ . . .. .......... .. . . . ...... . . . . ... . .. . .. . . . .......................................................................................................................................................................................................................................................................................................................... .. .... .... . .. .
lowQualScore : 00 00 8 000000 88888 0 0 888 8 8 8 88888 0 8 00 0 2 8 88888888 0000 22 8 0 00 8 000 0 0 00 0 0 88 8 44 0 6 88 0 0 8 0 00 0 0 8 0 0 444 0 0 888 88888 00 00 0 8 7 33 7 333333 7 7 7 2 7 88888 7 8 00 000 0 0 8 0 000 0 00 8 8 66 0 88 0 66666 0 0 0 0 0 000 8 66 8 0 8 0 0 0 0 0 0 0 666 7 7 0 0 7 7 7 7 7 333 777 2222 6 66 0 00 0 0 0 0 66 8 6 0 8 8 0 8 888 0 4 0000000 0 00 0 0 0 8 88 0 0 7 7 7 66666 66 0 9 000000000000000000000 7 7 7 7 6666666 99 1111111111 7 0000 99 7 1 7 7 3 99 7 7 0 99 0 2 99 888 0 0 0 99 4 0 0 6 4 8888888 888 99 44 4 11 7 0 7 000 1111 1111 99 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 7 7 666 1111111111111111111111111111 7 1111 88888888 22 7 5 7 7 55 7 00 3333 8 2 88888 3 888 8888 22 7 11111111111111111111 00 2 00 2 66 0 6 2 6 0 00000 00 44444 7 5 7 0 222 8888 0 00 88 0000000 5 0 55 2 0 2 8888888888888 2 555 000000000 2 2 0 88 5 5 0 88 2 0 5 88888888 0 0 22 2222222222 00 5 2 0 000000 0 0 0 7 888 3 00 3 77 0 0 2 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 00 0000 0000 0 00 0
consensus : CACGAGTTCTTGCTATATACCAC--GAGAT------ATACAAA---GACAATGTGTCGCC-TTTATAGAGTAAATTACTAA--AAACA-AAGC--AGAC-AGGGTTACTT-------CTCT----AGAAAAAN-AACTGAGTG-TGG-AAGTGACTCGAAGGCATTGTATGG-CC-TGAC-A-AC-CG-ACTTCTTGGAAACAATCATGAGCCC-TCTCTACCCAGCCAGCGACTG-TGACATCGC-TTTGTCC--AAC-AGATTTT-CTG-ATA-TTTTCACAGGGA-AGATCCAGAC-CATCAGA--GCT---A-TGCTT-GCA--TGA-GGCGAACCAAACTAAGTGACTTAGAAA-CTGATTGCTTTGAG-AG-CA---GA-TATTAAGTTTCAGTGG-TC---A-CACCCTTGATGAGTTTAC--TGCAGCATCG---TGTG-ACGAG-GTGAAAAAA-CTG---C-TCACT-GAGCTCANCAT-CT-A-AGTCCTGTGAAC-TTGA--TT-CCTATCCC-GACTTTCCTGCTT-A-AACAGTG-TGTTGACGCCTTCGTTCCGAGTAATCACAACGATAGTT-AAC-A-AATC-A-TTGT-GCGAATC-TG-GTGGTGCCGATGA-ATTTCGAA-CAGGCNATC-GTCA-GG-CCGC-TG-TTG--AAGAAGCCG---GGTT----TGGACAAAGAAGTTCTTT-AA--AAC-TATC-GCCCCG-TTTCGAATCTT-CCATTTGTGTCGAAAATTGTTG-AGAAGATTGTTGCAAA--GAGAAT-AGACCGTT-A----CATT-T--G-A-CTT-CAACTTTCTA-CATGAC-AACTTGC-AATCT-GC---G-TATCG--CTCATGTCATTCTACAGAA--AC--AG---A-C------TT-CT-CAGA-GTACA-------TCATG--ACAT--------T-GCGACTGCATTAGACAG-C--AACTGCTGT--GCTGT-CCTTG-T-AATGTT-AGA-CCTGTCAGCTGCTTT-CGATGTCA--TTGA-TCATCA--CA---TTCT-GTTT-CG-GC--GCC-TCG-AACACA-C-----TTACGGGA---TAGCA--GGTTCTGCATT-ATCGTGGAT-CAAGTCGTA---CTT---AAG----TG-ACAGGT---CTC-AAC--G---TG-----T----AGCCA--T----TGGCTT-T------GTCT-TA-TCN-------GA----CG-A----C-AGACCA---CT-TGAAA-------T--AC--GT-G-TGCCACAAGGC--TCT-G---------------GT---GC----TC-GGACCAAAACT---ATAT-CG--TATGTTCTCAAAGCCGATCGGT-GA--AATCTGT-CGACTTCATGA-CG-TGNAATATCAC-ATANATGCNGA-T-GACACGC-A--AATCTACATT--G-TGG--T---------CGAACC-NTGGA--AAANTGGG--AGGAC-ATATCACCAAGACTCAANAATTGTCT-CTC-----TGA--GATCCGTGAATGGATGAGCAT-CAATTTNCTGAAGCTGAATCAGGAC-AAGACTGAA-C-TGATGGTT--TT-CG--CTCCGAAACATC--GCGCTAAGGACGTAGCTGA-ACTAAGCATCTCGTTCGGA-GGCTGTGTCAT--TCA-CA-A---TGCTCCGTACGTA--AAAAAACCT---------GGGTGCTTATTTTG-ACAGAA-CCCTTTGCATGGAAAANC--AATGCGAC-GCAAT-AANG--AGGTCGTG-CT-ACTT-GAACATTCGGG-ATATT-GG-NGTATCCGT-AGTGTATC-TCN-----GAGGTTGCATGT-AAGACG-CTCGT-CA-GNTCACT-TGTAACGTCTCGCCTTGACTACGGAAA-TGC-C-TTGNTCNACGAC--GT-CGA-------AAGCAGC-----TGAC-AGG--TAA-AC--T-ACAAA-A-GTACAG---AACACAGCAGCTCGACTGATCAGTCG--CACTAAAA-AGTATGATCATATTACACCGGTATTGA--CAGACCTTCATTGGCTTCCGGTACAGTATTGTATTCAATTCAAAGTTCTTGTGCATGCCTACAAGGCCGTT---CAGATTTGG-ACCTA-----CTC-----ACCTTAGCTAACTG-ACTC-AACC--------TTATT---CTCCAGAA--AACAGTATGCTTTTGAAAGTTCC-TCGGACTAGAACGAAGTCATATGGAAA
Reference ( gi|1 ) : CACGA--TCTTGCTATATACCAC--GAGAT------ATACAAA---GACAA-GTGTCGCC-TTTATAG--TAAATTACTAA--AAACA-AAGC--AGAC-AGGGTTACTT-------CTCT----AGAAAAAG-AACTGAGTG-TG--AAGTGACTCGAAGGCATTGTATGA-TC-TGAC-A-AC-CG-ACTTCTTGGAAACAATCATAAGCCC-TCTCTACCCA-CCAGTGACTG-TGCCATCGC-TTTGTCC--AAC-AGCTTTT-CTG-AT--TTTTCACAGGGA-AGATCCAGAC-CATCAGA--GCT---A-TGCT--GCA--TGA-GGCGAACCAAACTAAGTGACTTAGAAA-CTGATTGCTTTGAG-AG-TA---GA-TATTAAGTTTCAGTGG-TC---A-CACCCTTGATGAGTTTAC--TGCAGCATCG---TGTG-ACGAG-GTGAAAAAA-CTG---C-TCAC--GAGCTCAACAT-CT-A-AGTCCTGTGAAC-TTGA--TT-CCTATCTC-GACTTTCCTGCTT-A-A-CAGTG-TGTTGACGCCTTCGTTCTG-GTAATCACAACAATAGTT-AAC-A-AATC-A-TTGT-GTGAATC-TGGGTGGTACCGATGA-ATTTCGAA-CAGGCAATC-GTCA-GG-CCGC-TG-TT---AAGAAGCCG---GGTT----TAGACAAAGAAGTTCTTT-AA--AAC-TATC-ACCCCG-TCTCGAATCTT-CCATTTGTGTCGAAAATTGTTG-AGAAGATTGTTGCAAA--GAGAAT-AGACCGT-------CATT-T--G-A-CTT-TAACTTTCTA-CATGAC-AACTTAC-AATCT-GC---G-TATCG--CTCATGTCATTCCACAGAG--AC--AA---A-C------TT-CT-CAGA-GTACA-------TCATG--ACAT--------T-GCGACTGCATTAGACAG-C--AACTGCTGT--ACTGT-CCTTG-T-AAGGTT-AGA-CCTGTCAGCTGCTTT-CGATGTCA--TTGA-TCATCA--CA---TTCT-GTTT-CA-GC--GCC-TCG-AACACA-C-----TTACGGGA---TAGCA--GGTTCTGCATT-ATCGTGGAT-CAAGTCGTA---CTT---AAG----TG-ACAGGT---CTC-AAC--G---TG-----T----AGCCA--T----TGGCTT-T------GTCT-TA-TCT-------GA----CA-A----C-AGACCA---CT-TGAAA-------T--AT--GT-G-TGCCACAAGGC--TCT-----------------GT---GC----TT-GGACCAAAACT---ATAT-TG--TATGTTCTCAAAGCCGATCGGT-GA--AATCTGT-CG-TTTCATGA-CG-TGAAATATCAC-ATAAATGCAGA-T-GACACGC-A--AATCTACATT--G-TGG--T---------CGAACCAGTGGA--AAAATGGG--AGGAC-ATATCACCAAGACTCAAGAATTGTCT-CTC-----TGG--GATCCGTGAATGGATGAGCAT-CAATTTACTGAAGCTGAATCAGGAC-AAGACTGAA-C-TGATGG-A--TT-CG--CTCCGAAACATC--GCGCTAAAAACGTAGCTGA-ACTAAGTATCTCGTTCGGA-GACTGTGTCAT--TCA-CA-A---TGCTCCGTACGTAAAAAAAAACCT---------GGGTTCTTATTTTG-ACAGAA-CCCTTTGCATGGAAAAAC--AATGCAAC-GCAAT-AAGG--AGGTCGTG-CT-ACTT-GAACATTCGGGAATATTGGG-AGTATCCGTCAGTGTATC-TCA-----GAGGTTGCATGT-AAGACG-CTCGT-CA-ACTCTCTGTGTTACATCTCGACTGGACTACAGCAA-CGC-C-TTGATTTACGGC--AT-TAAC------AAGCAGC-----TGAC-GGA--TAA-GC--T-GCAGAGA-GTACAG---AACACAGCAGCCCGACTTATTACACGAACACGGAAATCGT---ACCATATAACTACGGTACTGATGCAG--CTACACTGGCTTCCAGTG-AGTTCAGAAGCCAATACAAACTTTTATTGTACGTCTTCAAGG-CGCTAAACA-ATTTGGCACCTGTATATCTCAAGGGAGCTTATCAAGCCGTACACAAACCCTGCGAGATTATTGCGCT-CGGAATCAAAATCAT-TTTTTTCAAGTTCCATC-GACCCGTACAAAAACATATGGAGA
gi|2 : CACGAATCCTTGCTATATACCAC--GAGAT------ATACAAA----ACAAAGTGTCGCCATTTATAG--TAA-TT-CTAA--AA-CA-AAGCCAAGACCAGGGTT---T-------CTCT----AGAAAAAG-AACTGAGTGGTG--AAGTGACTCGAAGGCATTGTATGA-TCCTGAC-AGAC-CG--CTTCTTGGAAACAATCATAAGCCCGTCTCTACCCA-CCAGTGACTG-TGCCATCGC-TTTGTCCC-AAC-AGCTTTTTCTG-AT--TTTTCACAGGGA-AGATCCAGACGCATCAGA--GCT-----TGCT--G-A--TGA-GGCGAACCAAACTAAGTGACTTAGAAA-CTGAATGCTTTGAG-AG-TA---GAATATTAAGTTTCAGTG--TC---A-CACCCTTGATGAGTTTAC--TGCAGCATCG---TGTG-ACGAG-GTGAAAAAAACTG---C-TCAC--GAGCTCAACAT-CTTA-AGTCCTGTGAAC-TTGA--TTTCCTATCTC-GACTTTCCTGCTT-A-A-CAGTG-TGTTGACGCCTTCGTTCTG-GTAATCACAACAATAGTT-AAC-A-AATCCA-TTGTTGTGAATCCTGGGTGGTACCGATGA-ATTTCGAAACAGGCA-TC-GTCA-GG-CCGC-TG-TTT--AAGAAGCCG---GGTT----TAGAC-AAGAAGTTCTTT-AA--AAC-TATCAACCCCG-TCTCGAATCTT-CCATTTGTGTCGAAAATTGTTG-AGAAGATTGTTGC-AA--GAGAAT-AGACCGT-------CATT-T--G-ACCTT-TAACTTTCTA-CATGAC-AACTTAC-AATCT-GC---G-TATCG--CTCATGTCATTCCACAGAGA-ACAAAA---A-C------TT-CT-CAGA-GTACA-------TCATG--ACAT--------T-G-GACTGCATTAGACAG-C--AACTGCTGT--ACTGT-CCTTGATAAAGGTT-AGA--CTGTCAGCTGCTTTCCGATGTCAATTTGA-TCATCAACCA---TTCT-GTTTCCA-GC--GCCTTCGAAACACA-C-----TTACGGGA---TAGCAG-GGTTCTGCATTAATCGTGGAT-CAAGTCGTA---CTT---AAG----TG-ACA-GT---CTC-AA---G---TG-----TAA--AGCCA--T----TGGCTT-T------GTCT-TA-TCT-------GA----CA-A----C-AGACCAG--CT-TGAAA-------T--AT--GT-G-TGCCAC-AGGC--TCT-----------------GT---GC----TTGGGACCAAAACT---ATAT-TG--TATG-TCTCAAAGCCGATCGGT-GA--AATCTGT-CGCTTTCATGACCG-TGAAATATCAC-ATAAATGCAGA-T-GACACGCAA--AATCTACATT--GTTGGGTT---------CGAA-CAGTGGA--AAAATGGG--AGGACAATATCACCAAGACTCAAGAATTGTCTCCTC-----TGG--GATCCGTGAATGGATGAGCATCCAATTTACTGAAGCTGAATCAGG-C-AAGACTGAA-C-TGATGA-T--TT-CG---TCCGAAACATC--GCGT--AAAACGTAGCTGA-ACTAAGTATCTCGTTCGGAGGACTGTGTCAT--TCAGCA-A---TGCTCCGTACGTAAAAAAAAACCT---------GGGTTCTTATTTTGAACAGAACCCCTTTGCATGGAAAAACCAAATGCAAC-GCAATAAAGG--AGGTCGTGTCT-ACTT-GAACATTC--GAATATTGGGAAGTATCCGTCAGTGTATCTTCA-----GAGGTTGCATGT-AAGACGCCTCGT-CA-A
gi|4 : CACGAGTTCTT-CTATATACCAC--GAGAT------ATACAAA---GACAATGTGTCGCC-TTTATAGAGTAAATTACTTA--ACACA-A-GC--AGAC-AGGATTACTT-------TTCTTTCTAGAAAAAT-TACTGAGTG-TGG-AAGTGACTCAAAGGCATTGTATGG-CC-TGAA-A-AC-CG-ACTTCTTGGAAACAATCA--AGACC-TCTCT-CCTAGCCAGCGACTG-TGACATAGC-TTTGTCC--AAC-AGATTTT-CTG-AAA-TTTTCACAGGGA-AGATCCAGAC-CATCAGG--GCT---AATGCTT-GCA--TGA-GGCGAACCAA-CTAAGTGACTTAGAAAACTGAT-GCTTTGAG-AG-CA---GA-TATTAAGTT-CAGTGG-TC---A-CACC-TTGATGAGTTTAC--TGCAGCATCG---TGTG-ACGAG-GTGAAAAAA-CTG---C-TCACT-GAGCTCACCA--CT-A-AGTCCTGTGAACCTTGA--T--CCTATCCC-GACTTTTCTGCTT-A-AACAGTG-T-TTGACGC-TTCGTTCCGAGTAATCACAACGATAGTT-AAC-A-AATC-A-TTGT-GCGAATC-TG--TTGTGCCGATGA-ATT--AAA-CAGGCCATC-GTCA-GGGCCGC-TG-TTG--AAGAAGCCG---GGTT----TGGACAAAGAAGTC--TT-AA--AAC-TATC-GCGCAG-TTTCGAATCTT-CCATTTGTGTCGAAA-TTGTTG-AGAGAGTTGTT-CAAA--GAGAAT-AGACCAT-------CATT-T--GGA-CTT-CAACTTTCTA-CATG-C-AA-TTGC-AATCT-GC---G-TATCG--CTCATGTCATCCTACAGAAGTAC--AG---A-C------TT-CT-CAGA-GTACA-------TCATG--ACAT--------TTGCGACTGCATTAGACAATC--AACTGCTGT--GCTGT-CCTTG-T-AATGTTTAGA-CCTGTCAGCTGCTTT-CGATGTCA--TTGA-TCATCA--CA---TTCT-GTTT-CG-GC--GCC-TCG-AA-ACAAC-----TTACGGGA---TAGCA--GGTT-TGCATT--TCGTGGAT-CAAGTCGTA---CTT---AAG----TG-ACATAT---CTC-AAT--G---TG-----T----AGCCA--T----TGGCTT--------GTTT-T---CG-------GC----CG-A-------GAC-A---CT-TGAAA-------T--AG--GT-G-TGCCACAAGGC--TCTTG---------------GT---GC----TT-AGACCAAAACT---A-ATATG--TATGTTCTCAAAGCCGATCGGT-GAT-AATCTGT-CGACTTCATGA-AA-TGAA-TATCAC-ATATATGCAGA-T-GACACGC-A--AATCTACATT--G-TGG--T---------CGAAC--ATGGA--AAATTGGG--AGGAC-ATATCACCAAGACTCAATAATTGTCT-CTC-----TGA--GATCCGTGAATGGATGAGCAT-CAATTTCCTGAAGCTGAATCAGGAC-AAGAC-GAA-C-TGATGGTT--TT-CG--CTCCGAAACATC--GCGCTAAGGACGTAGCTGA-ACTAAGCATCTCGTTCGGA-GGCTGTGTCAT--TCA-CAGA---TGCTCCGTACGT---AAAAAACCT---------GGGTGCTTATTTTG-ACAGAA--CCTTTGCATGGAAAACC--AATGC-AC-GC-AT-AACG--AGGTCGTG-CTAACTT-GAACATTCGGA---ATT-GG-CGTATCCGT-AGTGTATC-TCT-----GAGGTTGCAGGTAAAGACG-CTCGT-CA-A
gi|3 : gCACGAG-TCTTGCTATATACCAC--GAGATGAGAATATACAAA---G-CAATGTGTCGCC-TTTATAGAGTAAATTACTAA-----CACAAGC--AGAC-AGA-TTACTTTTCTCTCCTCT----AGAAAATT-A-CTGAGTG-TG--A-GTGACTCAAAGGCATT-TATGGGCC-TGA--A-AC-CGGACTTCTTGGAAACA-TCA--AGACT-TCTCTCTCCAGCCAGCGCCTG-TGACA--GC-TTTGTCCGAAAC-AGATTTT-CTG-AAAATTTTCACAGGGCCAGATCCAGAC-CATCAG---GCT---A-TGCTT-GCAATTGA-GGCGAACCAATCTAAGTGACTTAGAAA-CTGAT-GCT--GAG-AGGCC---GA-TATTAA--TTC-GTGGATC---A-CACC-TTG-TGAGTTTAC--TGCAGCATCG---TGTGGACGAG-GTGAAAAAA-CTG---CCTCACTTGAGCTCACCA--CT-A--GTCCTGTGAAC-TTGA--T--CCTATCCC-GACTTTTCTGCTT-A-AACAGTG-T-TTGACGC-TTCGTTCCGAGTAATCACAACGATAGTT-AAC-AGAATC-A-TTGT-GCGAATC-TG--TTGTGCCGATGA----TTGAA--AAGCCATC-GTCA-GG-GCGC-TG-TTG--AAGAAGCCG---GGTT----TGGACAAAGAAGTC--TT-AA--AAC-TATC-GCGCGG-TTTCGAATCTT-CCATTTGTGTCGAAA-TTGTTG-AGA-GATTGTT-CAAA--GAGAAT-AGACCATTCACACACATT-TTGG-A-CTT-CAACTT-CT--CATGTC-AA-TTGC-AATCT-GC---G-TATCGGCTTCA-GTCATCCTACAGAAGTAC--AG---A-C------TT-CT-CAGA-GTACA-------TCATG--ACAT--------T-GCG-CTGCATTAGACAA-TCTAACTGCTGT--GCTGT-CCT-G-T-AATGTTTAGATCCTGTCAGCTGCTTT-CGATGTCA--TTGA-TCATCA--CA---TTCT-GTTT-CG-GC--GCC-TCGAAACA-A-C-----TTACGGGA---TAGCA--G--TTTGCATT--TCGTGGAT-C-AGT-GTA---CTT---AAG----TG--CATAT---CCC-AAT--GGT-TG-----T----AGCCA--T----TGGC-T-T------G--T-TA-TTC-------GG----C-------CGAGA-CA---CT-TGAAA-------T--ACG-GT-G-TGCCACAAGGC--TCTTGAGGGGGGGGGGGGGGGT---GC----TT-AGACC-AAACTAA-ATAT-CG--TATGTTCTCAAAG-CGATCGGT-GAT-AATCTGT-CGACTTC-TGA-AA-TGCAATATCAC-ATATATGGCGA-TAGACACGG-C--AATCTAC-TT--G-TGG--T---------CGAAC--ATGGA--AAATTGGG--AGGAC-ATATCACCAAGACTCAATAATTGTCT-CTC-----TGA--GATCCGTG--TGGATGAGCAT-CAATTTCCTGAAGCTGAATCAGGAC-AAGACTGAATC-TGATGGTT--TT-CG--CTCCGAAACATC--GC-CTAAGGACGTAGCT-A-ACT-AGCATCTCGTTCGGA-GGCTGTGTCTTCATCA-CG-A---TGCTCCGTACGT---AAAAAACCT---------GGGTGCTT-TTTTG-ACAGAA-CC--TTGCATGGAAAACC--AATGC-AC-GC-AT-AACG---GGTCGTG-CT-ACTTGGAACATTCGGG-ATATT-GG-CGTATCCGT-AGTGTATC-TCT-----GAGGTGGCCAGT-AAGACG-CTCGT-CA-A
gi|6 : gCACGA--TCTTGCTATATACCAC--GAG-T------ATACAAA---GACAA-GTGTCGCC-TTTATAG--TAAATTACTAA--AA-CA-AAGC--AGAC-AGGGTTACT--------CTCT----AGAAAAAG-AACTGAGTG-TG--AAGTGACTCGAAGGCA-AGTATGA-TC-TGACAA-AC-CA-GCTTCTTGGAAACAATCATGAGCCC-TCTCTACCCA-CCAGTGACTG-TGCCATCGC-TTTGTCC--AAC-AGCTTTT-CTGAAT--TTTTCACAGGGA-AGATCCAGAC-CATCAGA---CT---A-TGCT--GCA--TGA-GGCGAACCAAACTAAGTGACTTAGAAA-CTGATTGCTTTGAG-AG-TA---GA-TATTAAGTTTCAGTGG-TC---A-CACCCTTGATGGATTTAC--TGCAGCATCG---TGTG-ACGAGTGTG-AAAAA-CTG---C-TCAC--GAGCTCAACAT-CT-A-AGTCCTGTGAAC-TTGA--TT-CCTATCCT-GACTTTCCTGCTTAA-A-CAGTGTTGTTGACGCC-TCGTTCTG-GT-ATCACAACAATAGTT-AAC-A-AATC-A-TTGT-GTGAATC-T--GTGGTACCGATGA-ATTTCGAA-CAGGCAATC-GTCA-GG-CCGC-TGTTT---AAGAAGCCG---GGTT----TAGACAAAGAAGTTCTTTAAA--AAC-TAT--ACCCCG-TCTCGAATCTT-CC-TT--TGTCGAAAATTGTTG-AGAAG-TTGTTGCAA----AGAATAAGACCGT-------CATT-T--G-A-CTT-TAACTTTCTA-CATGAC-AACTTAC-AATCT-GC---G-TATCG--CTCATGTCATTCCACAGAG--AC--AAAACA-C------TT-CT-CAGA-GTACA-------TCATG--ACAT--------T-GCGACTGCATTAGACAG-C--AACTGCTGT--ACTGT-CCTTG-T-AAGGTT-AGA-CCTGTCAGCTGCTTT-CGATGTCA--TTGT-TCATTA--CA---TTCT-GTTT-CA-GC--GCC-TCG-AACACA-C-----TTACGGGA---TAGCA--GGTTCTGCATT-ATCGTGGAT-CAAGTCGTA---CTT---AAGGAGCTGCACAGGTATCCTCAAAC--GCTCTGACCGATGATAAGCCA--TGGACTAGCTT-T------GTCTCTACTCTAGACCGAGA----TATA----C-AGACTC---CT-TAAAATAAAGACT--AT--GT-GTTGCCACAAAGCTGTCTAG---------------GT---GCTACATT-GATCCAAAA
gi|5 : ggcgCACGAG-TCTTGCTATATACCACACGAGAT------ATACAAAAAGGACAA-GTGTCGCC-TTTATAG---AAATTAC-AATCAAA-A-AAAC--AGAC-AGA-TTACTT-------CTCT----AGAAAAAATAACTGAGTG-TGGAAAGTGACTCGAAGGCATGATATGG-CC-TGAC-A-AAACG-ACTTCTTGGAAACAGTCAAGAGCCC-TCTCTAACC--CCAGTGACTGTTGACATCGCATTTGTCC--CATAAGAT--------AT--GTTTCACCAGGA-AGATCCAGAC-CATCAGAGGGCTATAA-TGCTGAGCA--TGAGGGCGAACCAA--TACGTGACTCAGAAA--TGA-TGCTTTGAGAAG-CA---GA-TATTAA-TTACAGTGG-TC---AGCACCCTTGATGAGTTTACTTTGCAGCATCGAGATGTG-ACGAG-GTGAAAAAA-ACGAGAC-TCAC--G-GCTCATCATACT-ATAGTCCTGTGACA-TTGAATTC-CCTATCCCGGACTTTCCTGCTT-AGA-CAGTGATGTTG------TTGT--TG-GTAATCACAACGATAGTTAAACAA-AATC-ATTTGT-GCGAATC-TAAATGGTACCGATGAGATTTCAAA-CA-GCAATCAGTCAGGG-CCGCTTG-TTGAGAAGAAGCCGAGAGGTTTGTGTGGAC-AAGAAGTTCTTT-AATTTACGTATC-GCCACGTTTTCGAATCTTACCA-TTGT-TCGAAAATTGTTGAAGAAGATTGTTGCAAAAGGAGAAT-A-----TTTA----CATTATG-G-A-CTTGCAACTTTCTACCATGACAAACTTGCAAATCT-GCTTTGTTCTNN--NNNNNNNNNNNNNNNNNNN--NN--NN---G-CATGTCATT-TTACAGA-G-ACAGCACTTCTCATAGTACATCATGACATT-GCGACTGCATTAGACAA-C--AACTGCTGT--GCTGT-CCTTG-T-AATGTT-AGA-CCTGTCAGCTGCTTT-CGATGTCA--TTGA-TCATGA--CA---TTCT-GTTT-CG-GC--GCC-TCG-AACTCA-C-----TTACGGGA---TAGCA--GGTTCTGCATT-ATCGaata
gi|3 : aatagtaggacatattgataaaacacatgagggacaacagataactatcttgcaggcaagtccccggtgtcagatagtcagtacttgtgtgactataaggagtatgtcctcctcaggatcataaatgggaatttacactttactgccaaatttctacgatttcgacgcaacacaaaacgggtttccttcaggaattacgcaatatcataacttaacgaatttaataaagatacattgaaaaacgtcaactgcagctgtatcagcagtaaatacaggttgacatctcgtcaaaattctaaataagaatgcgcgcagaggtctttggacaagcattgcttttttacaatcaaaagagatcgtcctgcggaccgaactctccatgggtactcggatgaattgcgagaaagccaaacgcgacatgacgaaaaaccggaagcgtgagtggacaA-CCGATCGCTTTGAG-AA-CATACGA-TATTTAGTT----TGG-TCTAAG-CACCC
gi|20 : gcacgagtcttgctatataccacgagatgagaatatacaaagcaatgtgtcgcctttatagagtaaattactaacacaagcagacagattacttttctctcctctagaaaattactgagtgtgagtgactcaaaggcatttatgggcctgaaaccggacttcttggaaacatcaagacttctctctccagccagcgcctgtgacagctttgtccgaaacagattttctgaaaattttcacagggccagatccagaccatcaggctatgcttgcaattgaggcgaaccaatctaagtgacttagaaactgatgctgagaggccgatattaattcgtggatcacaccttgtgagtttactgcagcatcgtgtggacgaggtgaaaaaactgcctcacttgagctcaccactagtcctgtgaacttgatcctatcccgacttttctgcttaaacagtgtttgacgcttcgttccgagtaatcacaacgatagttaacagaatcattgtgcgaatctgttgtgccgatgattgaaaagccatcgtcagggcgctgttgaagaagccgggtttggacaaagaagtcttaaaactatcgcgcggtttcgaatcttccatttgtgtcgaaattgttgagagattgttcaaagagaatagaccattcacacacattttggacttcaacttctcatgtcaattgcaatctgcgtatcggcttcagtcatcctacagaagtacagacttctcagagtacatcatgacattgcgctgcattagacaatctaactgctgtgctgtcctgtaatgtttagatcctgtcagctgctttcgatgtcattgatcatcacattctgtttcggcgcctcgaaacaacttacgggatagcagtttgcatttcgtggatcagtgtacttaagtgcatatcccaatggttgtagccattggcttgttattcggccgagacacttgaaatacggtgtgccacaaggctcttgaggggggggggggTGCCGATGA-ATTTCAAA-CAGGCCATC-GTCA-GG-CCGC-TG-TTG--AAGAAGCCG---GGTT----gataatctgtcgacttctgaaatgcaatatcacatatatggcgatagacacggcaatctacttgtggtcgaacatggaaaattgggaggacatatcaccaagactcaataattgtctctctgagatccgtgtggatgagcatcaatttcctgaagctgaatcaggacaagactgaatctgatggttttcgctccgaaacatcgcctaaggacgtagctaactagcatctcgttcggaggctgtgtcttcatcacgatgctccgtacgtaaaaaacctgggtgcttttttgacagaaccttgcatggaaaaccaatgcacgcataacgggtcgtgctacttggaacattcgggatattggcgtatccgtagtgtatctctgaggtggccagtaagacgctcgtcaa
gi|7 : ACGTGC-AATCTTGC---A-TATCG--CGCTTGTCACTCTACCGAA--AC--TG---CTC------TTACT-TACATGTTCA-------TCACG--ACAT--------T-GTGTCTGCATTAGACGG-A--AATTCTTGT--A-TGTCCCTTG-T-GATGCT-CGA-CCTTTCTGCCGCCTT-TGATGTGA--TAGATTCACAA--CA---TTCTCATCT-CA-TT--G---GCG-A-------------TATGGAA---TATCT--GGATCAGCATT-GGCATGGTT-TAGATCATATCTCCT----GG----TC-GCAG------TC-AGCAGG---TT-----T-----GCAA--T----TGGTTT-TAAAACAGTTT----TCA-------G-----CG-ATGTTC-AGGCTATGTTT-TG-----------------GC-G-TTTCCCAGGGC--TCT-----------------GT---G-----TG-GGACCACGTCT---TTAC-TG--CATGTTTTCTAAACC-ATTGGT-GA--AATATGC-CGACGTCATTA-CATTGTGCTATCACTGT-TATGCCGACT-GACACGC-AGGAA--TATATG--G-TTA--TAAAACCTAACGAACC-CTGAACCAGAATTGC--A-GAC----------AGACTTCAAAAGTGCCT-CTCAAATATAA--GCCCC-----TGGATGAA-GT-CAA-ATACTAAAACTAAATCAGGACAAAAACTGAA-CTTGATTC-ATTTT-TG--CTCCCAAA
gi|10 : TAC-AATCC-GT---C-TATCGG-CTCAT--CACTCAAC-GAA--ACT-GC---A-C------TC-CT-C-GA-GT-CA-------TTATA--AAAT--------A-TCTAC-ACCCTA-ACAA-G--AACTTC-GTTAACTGT-ACTCT-C-ATGCTT--GA-TCT-TCAGCTGCAT--CGACGTTA--TATA-TTACCA--TA---TT-T-ATTT-CG-GA--GAC-TCG-AACACA-C-----GTTTGCCA---TATCT--GACGC-GCTTT-CT----GAT-CAATTC--A---ATT---GAC----CA-ACAG-T---C-C-AA--------G-----T----AAC-A--T----AGGCTC-GA-----GCCT-TA-TCG-------GA----TG------C-AGAA-G---CTCTGAAA-------T---C--GG-G-TGATCTAAGG----------------------------------TC-GGACC----CTCGGATGA-CG--CATGTTTCCAAACCTAATCGGA-AA--CATCTGTACG-AACCATCA-CA-TGCAATACCAC--TGCTTGCAGA-T-GACACTC-A--AATATACATC--G-TGA--T---------AGAGCCaagaagatcttgtgacttcttttagatttgtcaactcacatttggaggatcgatcattacaagtgtgtcgtgcgttaaaaaacctttggtgttttctttgataagatctatcatggatttcccaataaaacatctagtcaaactgtgctactcccaacttaaaaacatcgatagaattagtaactgtccaacaatcatcagatcacttgtaatgtctcgccttgactacggaaaatgccactcctctactctgttaaccgttaaaaacagcgtctttaacaaagctgcaaaatgtacgaacacgctgctcgac
gi|16 : CTTT-CGATGTGA--TCGA-TCATTA--GAAGATACC-TTTTACATACTAGTC-TCG-AA-ATA-GAGATGTAAAGGGAAATTAACACTGCCTCTGCTTG-ATCTTGGATACAA-TCATA---TTCTGAAAG----TG-ACAA-T---GTC-AGC------TG-----T----AGCCGTTT----TGGTTTCC------GAAC-TG-TCT-------GAATCCCA--------GGA--A---CT-T---A-------TCGATCGGTAG-TTCCGCAAGGG--TCT-----------------GTGTGGC----TC-GGCTCGA---------GT-TGCCT-TGTTC----AGGCAACCGATAGAATAATATGT-GA-CTTCATGT-CG-TGGACTATCAC-TTAGAcgctatgacttagagatgttcgtcccctcttaataactctcaccggacatcagatcatgatgtttactaatcttctgaagttgaacccaagataaaacgaattaactttttctcc
gi|8 : GCTGA-C-GACACGC-A--GGTC--CATTTAG-TGA--T---------AAAACCGTTAGA--CAACTGGACTAAGTT--TAT-AGAAAGACTC--GAA--GCCT-GTT-----TAGCAGAT----------ATCAGCA---AATATGCTGAAATTGAACCATGAC-AAGGCAGAG-T-TGATAG-T--TTTCGGACCTCGAAACAGCAAGCGTTA----CCTAGCTAATACCA-GCATTACTTTCGAT-GGATTTGTCAT--T----A-AGTCTGTTCCG---GTATTCAAAAACTTAGGGGGGGGGGGT----ATTTTG-ACGAAA-ATCTTAGCAT-GAGATAC--CATTTGTCTGCAAT---GGCTAAGTTTTG-TT-ATT-------TCCAG-----TT--G-AGTAAC-------ATACC-TCATCGACGATGATACATGC-AAAACA-TTAATACATGCTCTC---GTCACATCAAGGCTAGACTATGCTGA-TGC-A-TTGTTATATGGCCTATCTAAC-------AGT-GC-----TAAC--AA--CAA-AT--TAGTA-CGT-GTACAA---AATACCACAGCAAGGATGATCAGTCG--CACTAAAA-AGTATGATCATATTACACCGGTATTGA--CAGACCTTCATTGGCTTCCGGTACAGTATTGTATTCAATTCAAAGTTCTTGTGCATGCCTACAAGGCCGTT---CAGATTTGG-ACCTA-----CTC-----ACCTTAGCTAACTG-ACTC-AACC--------TTATT---CTCCAGAA--AACAGTATGCTTTTGAAAGTTCC-TCGGACTAGAACGAAGTCATATGGAAacttgtag
gi|21 : AT-CAATTTCCTGAAGCTGAATCAGGAC-AAGcagacgcttgactattttgcgccaataatgtggatcgcctaaccatcaggattatattgtgccaaatcactggat
gi|9 : CGTGT-CGAACA-ATCTT-CA-GGTCACT-TGTAATGTCTCGCCTTGACTACGGAAA-TGCAC-TTCCTCTACTCT--GT-TAA--------AACAGCGTCTTTAAC-A-----AA-GC----ACAAACATGTACAG---AACACTGCTGCTCGACT
gi|7 : tcggtagaattagaaacttcataaccgatgaaatgtTCAT-CA-GATCACT-TGTAATGTCTCGCCTTGACTACGGAAAATGC-CACTCCTCTACTCT--GT-TAACCGTTAAAAACAGCGTCTTTAAC-A-----AA-GC--T-GCAAAAT-GTAC-G---AACAC-GCTGCTCGACatgtaccgctccttcaaacacgacatatcaccccattttaatctctctacaatggctactgttacttccgaatttcagtacaaaatcctagtcaaatactgtcgacagcgctctgcatggcctatctccagtgtagcgatcagaagatttcaggttttgttaaataatactaaatgtgcggacagaaatgtatggtgacgaggcagcctcttgatcagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|5 : acgtgcaatcttgcatatcgcgcttgtcactctaccgaaactgctcttacttacatgttcatcacgacattgtgtctgcattagacggaaattcttgtatgtcccttgtgatgctcgacctttctgccgcctttgatgtgatagattcacaacattctcatctcattggcgatatggaatatctggatcagcattggcatggtttagatcatatctcctggtcgcagtcagcaggtttgcaattggttttaaaacagttttcagcgatgttcaggctatgttttggcgtttcccagggctctgtgtgggaccacgtctttactgcatgttttctaaaccattggtgaaatatgccgacgtcattacattgtgctatcactgttatgccgactgacacgcaggaatatatggttataaaacctaacgaaccctgaaccagaattgcagacagacttcaaaagtgcctctcaaatataagcccctggatgaagtcaaatactaaaactaaatcaggacaaaaactgaacttgattcatttttgctcccaaaaagaagatcttgtgacttcttttagatttgtcaactcacatttggaggatcgatcattacaagtgtgtcgtgcgttaaaaaacctttggtgttttctttgataagatctatcatggatttcccaataaaacatctagtcaaactgtgctactcccaacttaaaaacatcgatagaattagtaactgtccaacaaACAG-AA-TGT-C-ATGATCAATGAC--AT-CGA-------AAGCAGC-----TGAC-AGGTCTAACAT--T-ACA---A-GGACAG-----CACAGCAG
gi|4 : aatagtaggacatattgataaaacacatgagggacaacagataactatcttgcaggcaagtccccggtgtcagatagtcagtacttgtgtgactataaggagtatgtcctcctcaggatcataaatgggaatttacactttactgccaaatttctacgatttcgacgcaacacaaaacgggtttccttcaggaattacgcaatatcataacttaacgaatttaataaagatacattgaaaaacgtcaactgcagctgtatcagcagtaaatacaggttgacatctcgtcaaaattctaaataagaatgcgcgcagaggtctttggacaagcattgcttttttacaatcaaaagagatcgtcctgcggaccgaactctccatgggtactcggatgaattgcgagaaagccaaacgcgacatgacgaaaaaccggaagcgtgagtggacacacgagtcttgctatataccacacgagatatacaaaaaggacaagtgtcgcctttatagaaattacaatcaaaaaaacagacagattacttctctagaaaaaataactgagtgtggaaagtgactcgaaggcatgatatggcctgacaaaacgacttcttggaaacagtcaagagccctctctaaccccagtgactgttgacatcgcatttgtcccataagatatgtttcaccaggaagatccagaccatcagagggctataatgctgagcatgagggcgaaccaatacgtgactcagaaatgatgctttgagaagcagatattaattacagtggtcagcacccttgatgagtttactttgcagcatcgagatgtgacgaggtgaaaaaaacgagactcacggctcatcatactatagtcctgtgacattgaattccctatcccggactttcctgcttagacagtgatgttgttgttggtaatcacaacgatagttaaacaaaatcatttgtgcgaatctaaatggtaccgatgagatttcaaacagcaatcagtcagggccgcttgttgagaagaagccgagaggtttgtgtggacaagaagttctttaatttacgtatcgccacgttttcgaatcttaccattgttcgaaaattgttgaagaagattgttgcaaaaggagaatatttacattatggacttgcaactttctaccatgacaaacttgcaaatctgctttgttctnnnnnnnnnnnnnnnnnnnnnnnnngcatgtcattttacagagacagcacttctcatagtacatcatgacattgcgactgcattagacaacaaTGATCAATGAC--AT-CGA-------AAGCAGC-----TGAC-AGGTCTAA-ACATT-ACA---A-GGACAG-----CACAGCAGttcggcgcctcgaactcacttacgggatagcaggttctgcattatcg
gi|3 : gcacgagttcttctatataccacgagatatacaaagacaatgtgtcgcctttatagagtaaattacttaacacaagcagacaggattacttttctttctagaaaaattactgagtgtggaagtgactcaaaggcattgtatggcctgaaaaccgacttcttggaaacaatcaagacctctctcctagccagcgactgtgacatagctttgtccaacagattttctgaaattttcacagggaagatccagaccatcagggctaatgcttgcatgaggcgaaccaactaagtgacttagaaaactgatgctttgagagcagatattaagttcagtggtcacaccttgatgagtttactgcagcatcgtgtgacgaggtgaaaaaactgctcactgagctcaccactaagtcctgtgaaccttgatcctatcccgacttttctgcttaaacagtgtttgacgcttcgttccgagtaatcacaacgatagttaacaaatcattgtgcgaatctgttgtgccgatgaattaaacaggccatcgtcagggccgctgttgaagaagccgggtttggacaaagaagtcttaaaactatcgcgcagtttcgaatcttccatttgtgtcgaaattgttgagagagttgttcaaagagaatagaccatcatttggacttcaactttctacatgcaattgcaatctgcgtatcgctcatgtcatcctacagaagtacagacttctcagagtacatcatgacatttgcgactgcattagacaatcaaTGATCAATGAC--AT-CGA-------AAGCAGC-----TGACAGGA--T----C--T---AAACA-TTACAGGACAGCACAGCAGtcacattctgtttcggcgcctcgaaacaacttacgggatagcaggtttgcatttcgtggatcaagtcgtacttaagtgacatatctcaatgtgtagccattggcttgttttcggccgagacacttgaaataggtgtgccacaaggctcttggtgcttagaccaaaactaatatgtatgttctcaaagccgatcggtgataatctgtcgacttcatgaaatgaatatcacatatatgcagatgacacgcaaatctacattgtggtcgaacatggaaaattgggaggacatatcaccaagactcaataattgtctctctgagatccgtgaatggatgagcatcaatttcctgaagctgaatcaggacaagacgaactgatggttttcgctccgaaacatcgcgctaaggacgtagctgaactaagcatctcgttcggaggctgtgtcattcacagatgctccgtacgtaaaaaacctgggtgcttattttgacagaacctttgcatggaaaaccaatgcacgcataacgaggtcgtgctaacttgaacattcggaattggcgtatccgtagtgtatctctgaggttgcaggtaaagacgctcgtcaa
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): CTGTAAATGTATTAACAAAGCCAATAGGACGAAAAATTTGCCCGAAGAACCAATACTATGTCATATCACGTTAACAGCTCGACGACACGCAGGGTCTATTTAGTAATAAAATCGTTCAGACAACTGGGTCTAAATGTTTACAAAGAGACTTCGAAGCCTGCTTTATATACAGCATATATCAGCACCAATTGGATTAGTTTCATGCAAATATGCTAGATAATGAACCACGACAAGACAGAAGCTTATTGTGTATCAGACCATCGAGAAACAGCAAGCCGTAAAACAATAGCCAGGTAGTAAAAAACTTTGGGGGCTTTTTTATGAAAACCTAAGCGATGGGAAAACCATCTGGTGCAAGTGGCCAAGTACTGTTATAATTCCAGTTTAGAGGAACATAGGAAGAATCAGATAACCTCATCGACGATCGGTACATACAAAACATAATATCTCACTGCTCTTCGCTCACATCAAGACTAGACTATGCTAAT
Unaligned ( gi|12 ): ATAGCGGGACATATGTCCCGGGACATAAGTCCCGGACTACAATACACCCACCCCTATGTTGCAGGCAGTCCCGCGTGTCCGATAGTCCAGTACTTGTGGTGACCTCAAGGGTATGTCCTCGTTGCTCAGTCATATGGGAATTTACACTTTAACTGCAAATATCTACGATTTCGACGCAACACAACGGTTTCCTTCAGAAATTCAACGCAATGTCTCTTAACGAATTTCAATAAAGATATTGACGTCAAACTTGCGATGTATCGCAGTGATATACAGTTGGACATTTTTGTTGAAATTATATAGATAGAATGCGCGCGAGGTCCCTTGAAACAAGCATGCTGCTTTAGCAGTCAAAAGAGATCGTCCTGCGGCCGAACTTCTCCGTGGTTACTCGATGCTTTGGCGACAGACGGAAATCCGAGCGTGAGTGGAGGCCG
Unaligned ( gi|13 ): CAATCGCGGGACATATGTCCGGGACATAAGTCCCGGACTACAAATACACCCACCCCATGTTGCAGGCAGTCCCGCGTGTCCGATAGTCAGTACTTGTGTGAATCTCAGGTAGTTGTCCTCCTCAGATCATATGGGAATTTCAACTTTACTGCAAATATCTACGATTTCGACGCAACACAAAACGGTTTCCTTCAGGAAATTACGCAATGTCTAACTTAACGATTTCATAAAGATATTGAAACGTCAACTGCGATGTATCCGCAGTGAATACAGTTGGACATTTTGTTGAATATAATAAGAATGCGCGCGAGGTCTTGAACAAGCATGCTGCTTTACAGTCAAAAGAGATCGTCCTGCGCGGCCATCTCCGTGGTTACTCGACTGAATTGCGACAGACGGAAATCCGAGCGTGAGTGG
Unaligned ( gi|14 ): TATGTTGCAGGCAGTCCCGCGTGTCGATAGTCAGTACTTGTGGTGACTCTCAGGGTATGTCCTCCTCAGATCATATGGGAATTTACACTTTACTGCAAATATCTACGATTTCGACGCAACAACAAACGGTTTCCTTCAGGAAATTACGCAATGTCTAACTTAACGAATTTCAATAAAGATATTGAAACGTCAACTGCAGATGTATCCGCAGTGAATACAGTTGGACATTTTGTTGAATTATATAATAAGAATGCGCGCGAGGTCTTGAAACAAGCATGCTGCTTTACAGTCAAAAGAGATCGTCCTGCGGCCGAACTCTCCGTGGTTACTCGACTGATTGGCGACAGACGGAAATCCGAGCGTGAGTGGAGCCG
Unaligned ( gi|15 ): TCTTGCGAACTAGAAGTCCAATTCCAAACAAATCTGCTTAAGCAATGTTTGAACTCTGTGCTTCCTATTGATACGAAATCATAAACAGATCATTTTCAAAACTCAACAGGACGCACCCTCGTTGTAAGAATGCTAATGTTCGACCACTTATCAAGCGACCAATGGCTAGACAAAGACGAATGTAAGAAATTATGCGTCCGGTATCCGAATTACCGTTCTGAGGCTAAAAGTCCTTGAAAAGCCGGTAGCATCGCGATTGGACAAACACACCGCGATTATAAATGATCTGCAACG
Unaligned ( gi|17 ): TGGGGGCTTATTTTGGATGAAACTAAGCATGGAAAACATCTGTCTGCACTCTGAGTGGCCAAGTCTTGTTATTTTCCAGTTGAGGAACATAGGAAGAATCAGATACTGCCACCTATGAACTCGTTTTAACAAAACTTGAT
Unaligned ( gi|18 ): TGTAATGTCTCGCCTTGACTACGGAAATGGACTCCTCTACATTAAAACAGCGTATTTAACAAAGCTGCAAA
Unaligned ( gi|19 ): CCACGTGCAACTGCATATCACGCTTGTCACTCTACCAAACTGCTATACTACGTGTTCATCACGAGA
Alignments
lowQualScore : 111 111111 111 1 22 11111 2222222 1111 1 1 11 1 11 1 222 111 11111 22 1 11 111 111 33 11 11111 11 1 1 22222 111 111 1111 4444444 11 11111 11 1111 22222222222 1111111 11111111 1111 1 11111 11 11 1111 222222 3333333333333333333 1111111 555555555555555555555555555555555555555555555555555 22222222222 555555555555555555 1111 1111 222222222 11111 2222222222222 111111 111111 111 33333 11111 11 1 2222 111 1 222222 11111111 999999999999999999999999999999999999999 222222 1 22 2222222 22 11 1 1 333 1 2 7777777777777 2 2 77777777 333 1 22 1 2 1
lowQualScore : 888 99 999999 111 9 6 66 88888 6 99 6 9 1111111 4444 77 5 6 44 3 2 6 777 88 1 55 6 3 9 0 6 3 6 55 1 6 222 6 6 6 000 77777 66 99 6 1 6 00 6 6 6 6 3 6 6 6 99 111 6 6 6 111 6 00 1 44 6 6 6 66666 6 7 6 33 0 2 8 6 6 6 6 6 6 44444 6 5 5 6 5 5 5 5 222 000 2222 7 6 99 6 6 6 6 6 3 7 6 1 1 6 99 6 7777777 6 55 6 6 6 6 3 6 4 5 5 888 22222 11 1 1 4444 55555555555 5 5 0 6666666 66 88888888 5 0 0000 66 5 5 5 0 5 4 66 4 66 777 4 8 99999 66 4 4 99999 11111 777 00 0 00 5 1 0 888 888 0000 5 000000 5 6666666666666666666 1111111 333333333333333333333333333333333333333333333333333 5 55 33333333333 5 5 66 555555555555555555 5 88 5555 8888 4 0 0 1 5 3333 5 77 1 7777 6 8 66 1 5 5 8888 77 5 77 222222222 77777 77 1 77 6 55555 0 1 1 5 6666666666666 666666 0 5 1 5 5 8 666 5 666 77 3 99 77 77 99 999999 3 6 55 99 6 99 666 5 555 5 0 22222 5 44444 5 5 5 22 5 5 1 99 2 6 7 8 1 0 8 8 8 3 0000 8 999 6 8 111111 6 6 5 5 1 9 8 1 1 99 99999999 1 666666666666666666666666666666666666666 3 888 666666 3 5 4 1 2 66 77 3 5555555 4 66 77 88 4 5 666 4 3 4 2 66 4 5 555 5 0 1111111111111 2 2 4 0 4 0 22222222 555 5 77 2 2 5 55 0 5 3 4 4
lowQualScore : ... .. ...... ... . . .. ..... . .. . . ....... .... .. . . .. . . . ... .. . .. . . . . . . . .. . . ... . . . ... ..... .. .. . . . .. . . . . . . . . .. ... . . . ... . .. . .. . . . ..... . . . .. . . . . . . . . . ..... . . . . . . . . ... ... .... . . .. . . . . . . . . . . . .. . ....... . .. . . . . . . . . . ... ..... .. . . .... ........... . . . ....... .. ........ . . .... .. . . . . . . .. . .. ... . . ..... .. . . ..... ..... ... .. . .. . . . ... ... .... . ...... . ................... ....... ................................................... . .. ........... . . .. .................. . .. .... .... . . . . . .... . .. . .... . . .. . . . .... .. . .. ......... ..... .. . .. . ..... . . . . ............. ...... . . . . . . ... . ... .. . .. .. .. .. ...... . . .. .. . .. ... . ... . . ..... . ..... . . . .. . . . .. . . . . . . . . . . .... . ... . . ...... . . . . . . . . . .. ........ . ....................................... . ... ...... . . . . . .. .. . ....... . .. .. .. . . ... . . . . .. . . ... . . ............. . . . . . . ........ ... . .. . . . .. . . . . .
lowQualScore : 222 22 222222 777 8 7 33 77777 7 22 7 3 7777777 2222 77 0 7 22 3 5 7 555 33 7 33 7 2 2 7 7 0 7 88 2 7 333 7 7 7 888 55555 22 22 7 7 7 88 7 7 7 7 5 7 7 7 22 777 7 7 7 777 7 33 0 00 7 7 7 77777 7 3 7 33 8 2 0 7 7 7 7 7 7 55555 7 7 7 6 7 7 7 7 111 000 1111 3 7 22 7 7 7 7 7 2 3 7 7 7 7 22 7 3333333 7 88 7 7 7 7 5 7 3 0 0 888 55555 99 1 4 8888 00000000000 0 0 4 2222222 99 11111111 0 4 1111 99 0 0 0 0 0 4 11 4 11 888 4 9 33333 11 4 4 44444 11111 888 66 1 77 0 4 2 888 888 6666 0 000000 0 5555555555555555555 8888888 222222222222222222222222222222222222222222222222222 0 11 88888888888 0 0 99 666666666666666666 0 44 4444 7777 0 1 7 7 7 7777 7 11 4 7777 6 7 77 0 7 7 0000 99 7 99 999999999 66666 99 0 99 6 11111 7 4 0 7 7777777777777 666666 7 0 0 0 0 7 000 7 111 99 2 22 77 33 22 222222 7 7 22 22 7 22 888 7 777 7 7 33333 7 33333 4 7 7 33 4 7 0 22 0 7 3 0 0 8 0 0 0 2 6666 0 888 0 0 000000 7 7 7 7 0 8 0 0 0 00 66666666 0 222222222222222222222222222222222222222 0 888 333333 2 8 0 2 5 55 55 0 0000000 0 55 55 00 0 0 555 0 0 0 5 55 0 0 000 0 0 0000000000000 5 5 0 0 0 0 55555555 000 0 55 5 5 0 55 0 0 0 0 0
consensus : CACGAGTTCTTGCTATATACCAC--GAGAT------ATACAAA---GACAA-GTGTCGCC-TTTATAGA-TAAATTACTAA--AAACA-AAGC--AGAC-AGGGTTACTT-------CTCT----AGAAAAAG-AACTGAGTGTGGAA-GTGACTCGAAGGCATTGTATGG-CCTGACA-A-C-CG-ACTTCTTGGAAACAATCATGAGCCC-TCTCTACCCA-CCAGCGACTG-TGNCATCGC-TTTGTCC--AACAGCTTTT-CTGANA-T-TTTCACAGGGA-AGATCCAGAC-CATCAGA--GCT---A-TGCT--GCA--TGA-GGCGAACCAAACTAAGTGACTTAGAAA-CTGATTGCTTTGAG-AG-CAGA-TATTAAGTTTCAGTGG-TCA-CACCCTTGATGAGTTTAC--TGCAGCATCG---TGTG-ACGAG-GTGAAAAAA-CTG---C-TCAC--GAGCTCANCAT-CT-A-AGTCCTGTGAAC-TTGA--TT-CCTATCCC-GACTTTCCTGCTTAAACAGTG-T-GTTGACGCCTTCGTTCCGAGTAATCACAACGATAGTT-AAC-A-AATC-A-TTGT-GCGAATCT--GN-TGGTGCCGATGA-ATTTCG-AACAGGCNATC-GTCA-GG-CCGC-TGTT--GAAGAAGCCG---GGTT----TGGACAAAGAAGTTCTTTAA--AA-C-TATC-GCCCCG-TCTCGAATCTT-CCATTTGTGTCGAAAATTGTTG-AGAAGATTGTTGCAAA--GAGAATA-GACCGT-------CATT-T--G-A-CTT-CAACTTTCTA-CATGAC-AACTTGC-AATCT-GC---GT-----ATCG--CTCATGTCATTCCACAGA-A--AC--A-G--A---CTT-CTCAGA-GTACA-------TCATG--ACAT--------T-GCGACTGCATTAGACAG-C--AACTGCTGT--ACTGT-CCTTG-T-AATGTT-AGA-CCTGTCAGCTGCTTT-CGATGTCA--TTGA-TCATCA--CA---TTCT-GTTT-C---G-GC--GCC-TCG-AA-CAC-AC-----TTACGGGA---TAGCA--GGTTCTGCATT-ATCGTGGAT-CAAGTCGTA---CTT---AAG----TG-ACAGGT---CTC-AAC--G---TG-----T----AGCCAT----T--GGCTT------T------GTCT-TA-TC-GGA-CG------A----CAGACCA---CT-TG-AAA-------TAC-GT-G-TGCCACAAGGC--TCT----------------G-GTG-CTC-GGACCAAAACT--A-TATCGTATGTTCTCAAAGCCGATCGGT-GA-A--ATCTGT-CGA-CTTCATGA-CG-TGNAATATCACATA-NATGCAGA-T-GACACGC-A--AATCTACATT--G-TGG--T---------CGAACC-GT-GGA--AAANTGGG--AGGAC-AT--ATCACCAAGACTCAANAATTGTCT-CTC-----TG------AGATCCGTGAATGGATGAGCAT-CAATTTNCTGAAGCTGAA-TCAGGAC-AAGACTGAA-C-TGA-TGGTTTTCG--CTCCGAAACATC--GCGCTAAGAAC--GTAGC------TGA-ACTAAGCATCTC--GTTCGGAGG-CTGTGTCAT--TCA-CA-A---T-GCTCCGTACGT--A--AAAAAACC-T-----GGGTGCTTATTT-TG-ACAGAA-CCCTTTGC-ATGGAAAANC--AATGCGAC-GCAAT-AACGAGGTCGTG-CT-ACTT-GAACATTCGGG-ATATT-GG--NGTATCCGTCAGTGTATC-TCA-----GAGGTTGCATGT-AAGACG-CTCGT-CA-GNTCACT-TGTAACGTCTCGCCTTGACTACGG-AAATGC-C-TTG-CTCTAC------GG-C--GTTAA-A-AACAGCGTCTTTAACA---AAGCTG-CA-AA-ATGTACAGAACACCGCNGCTCGACTNATCANNCGAACACNGAAATNGTATGACCATATNACNNCGGTACTGATGCAGACCTNCACTGGCTTCCGGTGCAGTNCNGNANCCAATNCAAANTTCTNNTGCACGCCTNCAAGGCCGCTAAACAGATTTGGCACCTGTATATCTCAAGGGANCTTANCNAGCCGTACNCAAACCCTGCGAGATTATTGCGCTCCGGAATCAANANCATGCTTTTNNAAGTTCCATCGGACCNGNACGAAGNCATATGGAGA
Reference ( family-1163 ) : CACGAGTTCTTGCTATATACCAC--GAGAT------ATACAAA---GACAATGTGTCGCC-TTTATAGAGTAAATTACTAA--AAACA-AAGC--AGAC-AGGGTTACTT-------CTCT----AGAAAAAN-AACTGAGTGTGGAA-GTGACTCGAAGGCATTGTATGG-CCTGACA-A-C-CG-ACTTCTTGGAAACAATCATGAGCCC-TCTCTACCCAGCCAGCGACTG-TGACATCGC-TTTGTCC--AACAGATTTT-CTGATA-T-TTTCACAGGGA-AGATCCAGAC-CATCAGA--GCT---A-TGCTT-GCA--TGA-GGCGAACCAAACTAAGTGACTTAGAAA-CTGATTGCTTTGAG-AG-CAGA-TATTAAGTTTCAGTGG-TCA-CACCCTTGATGAGTTTAC--TGCAGCATCG---TGTG-ACGAG-GTGAAAAAA-CTG---C-TCACT-GAGCTCANCAT-CT-A-AGTCCTGTGAAC-TTGA--TT-CCTATCCC-GACTTTCCTGCTTAAACAGTG-T-GTTGACGCCTTCGTTCCGAGTAATCACAACGATAGTT-AAC-A-AATC-A-TTGT-GCGAATCT--GG-TGGTGCCGATGA-ATTTCG-AACAGGCNATC-GTCA-GG-CCGC-TGTT--GAAGAAGCCG---GGTT----TGGACAAAGAAGTTCTTTAA--AA-C-TATC-GCCCCG-TTTCGAATCTT-CCATTTGTGTCGAAAATTGTTG-AGAAGATTGTTGCAAA--GAGAATA-GACCGTT-----ACATT-T--G-A-CTT-CAACTTTCTA-CATGAC-AACTTGC-AATCT-GC---GT-----ATCG--CTCATGTCATTCTACAGA-A--AC--A-G--A---CTT-CTCAGA-GTACA-------TCATG--ACAT--------T-GCGACTGCATTAGACAG-C--AACTGCTGT--GCTGT-CCTTG-T-AATGTT-AGA-CCTGTCAGCTGCTTT-CGATGTCA--TTGA-TCATCA--CA---TTCT-GTTT-C---G-GC--GCC-TCG-AA-CAC-AC-----TTACGGGA---TAGCA--GGTTCTGCATT-ATCGTGGAT-CAAGTCGTA---CTT---AAG----TG-ACAGGT---CTC-AAC--G---TG-----T----AGCCAT----T--GGCTT------T------GTCT-TA-TC-NGA-CG------A----CAGACCA---CT-TG-AAA-------TAC-GT-G-TGCCACAAGGC--TCT----------------G-GTG-CTC-GGACCAAAACT--A-TATCGTATGTTCTCAAAGCCGATCGGT-GA-A--ATCTGT-CGA-CTTCATGA-CG-TGNAATATCACATA-NATGCNGA-T-GACACGC-A--AATCTACATT--G-TGG--T---------CGAACC-NT-GGA--AAANTGGG--AGGAC-AT--ATCACCAAGACTCAANAATTGTCT-CTC-----TG------AGATCCGTGAATGGATGAGCAT-CAATTTNCTGAAGCTGAA-TCAGGAC-AAGACTGAA-C-TGA-TGGTTTTCG--CTCCGAAACATC--GCGCTAAGGAC--GTAGC------TGA-ACTAAGCATCTC--GTTCGGAGG-CTGTGTCAT--TCA-CA-A---T-GCTCCGTACGT--A--AAAAAACC-T-----GGGTGCTTATTT-TG-ACAGAA-CCCTTTGC-ATGGAAAANC--AATGCGAC-GCAAT-AANGAGGTCGTG-CT-ACTT-GAACATTCGGG-ATATT-GG--NGTATCCGT-AGTGTATC-TCN-----GAGGTTGCATGT-AAGACG-CTCGT-CA-GNTCACT-TGTAACGTCTCGCCTTGACTACGG-AAATGC-C-TTG-NTCNAC------GA-C--GTCGA-A-AGCAGC-----TGACAGGTAAACTA-CA-AA-A-GTACAGAACACAGCAGCTCGACTGATCAGTCG--CACTAAAA-AGTATGATCATATTACACCGGTATTGA--CAGACCTTCATTGGCTTCCGGTACAGTATTGTATTCAATTCAAAGTTCTTGTGCATGCCTACAAGGCCGTT---CAGATTTGG-ACCTA-----CTC-----ACCTTAGCTAACTG-ACTC-AACC--------TTATT---CTCCAGAA--AACAGTATGCTTTTGAAAGTTCC-TCGGACTAGAACGAAGTCATATGGAAA
gi|1 : CACGA--TCTTGCTATATACCAC--GAGAT------ATACAAA---GACAA-GTGTCGCC-TTTATAG--TAAATTACTAA--AAACA-AAGC--AGAC-AGGGTTACTT-------CTCT----AGAAAAAG-AACTGAGTGTG-AA-GTGACTCGAAGGCATTGTATGA-TCTGACA-A-C-CG-ACTTCTTGGAAACAATCATAAGCCC-TCTCTACCCA-CCAGTGACTG-TGCCATCGC-TTTGTCC--AACAGCTTTT-CTGAT--T-TTTCACAGGGA-AGATCCAGAC-CATCAGA--GCT---A-TGCT--GCA--TGA-GGCGAACCAAACTAAGTGACTTAGAAA-CTGATTGCTTTGAG-AG-TAGA-TATTAAGTTTCAGTGG-TCA-CACCCTTGATGAGTTTAC--TGCAGCATCG---TGTG-ACGAG-GTGAAAAAA-CTG---C-TCAC--GAGCTCAACAT-CT-A-AGTCCTGTGAAC-TTGA--TT-CCTATCTC-GACTTTCCTGCTTAA-CAGTG-T-GTTGACGCCTTCGTTCTG-GTAATCACAACAATAGTT-AAC-A-AATC-A-TTGT-GTGAATCT--GGGTGGTACCGATGA-ATTTCG-AACAGGCAATC-GTCA-GG-CCGC-TGTT---AAGAAGCCG---GGTT----TAGACAAAGAAGTTCTTTAA--AA-C-TATC-ACCCCG-TCTCGAATCTT-CCATTTGTGTCGAAAATTGTTG-AGAAGATTGTTGCAAA--GAGAATA-GACCGT-------CATT-T--G-A-CTT-TAACTTTCTA-CATGAC-AACTTAC-AATCT-GC---GT-----ATCG--CTCATGTCATTCCACAGA-G--AC--A-A--A---CTT-CTCAGA-GTACA-------TCATG--ACAT--------T-GCGACTGCATTAGACAG-C--AACTGCTGT--ACTGT-CCTTG-T-AAGGTT-AGA-CCTGTCAGCTGCTTT-CGATGTCA--TTGA-TCATCA--CA---TTCT-GTTT-C---A-GC--GCC-TCG-AA-CAC-AC-----TTACGGGA---TAGCA--GGTTCTGCATT-ATCGTGGAT-CAAGTCGTA---CTT---AAG----TG-ACAGGT---CTC-AAC--G---TG-----T----AGCCAT----T--GGCTT------T------GTCT-TA-TC-TGA-CA------A----CAGACCA---CT-TG-AAA-------TAT-GT-G-TGCCACAAGGC--TCT------------------GTG-CTT-GGACCAAAACT--A-TATTGTATGTTCTCAAAGCCGATCGGT-GA-A--ATCTGT-CG--TTTCATGA-CG-TGAAATATCACATA-AATGCAGA-T-GACACGC-A--AATCTACATT--G-TGG--T---------CGAACCAGT-GGA--AAAATGGG--AGGAC-AT--ATCACCAAGACTCAAGAATTGTCT-CTC-----TG------GGATCCGTGAATGGATGAGCAT-CAATTTACTGAAGCTGAA-TCAGGAC-AAGACTGAA-C-TGA-TGG-ATTCG--CTCCGAAACATC--GCGCTAAAAAC--GTAGC------TGA-ACTAAGTATCTC--GTTCGGAGA-CTGTGTCAT--TCA-CA-A---T-GCTCCGTACGTAAA--AAAAAACC-T-----GGGTTCTTATTT-TG-ACAGAA-CCCTTTGC-ATGGAAAAAC--AATGCAAC-GCAAT-AAGGAGGTCGTG-CT-ACTT-GAACATTCGGGAATATTGGG--AGTATCCGTCAGTGTATC-TCA-----GAGGTTGCATGT-AAGACG-CTCGT-CA-ACTCTCTGTGTTACATCTCGACTGGACTACAG-CAACGC-C-TTG-ATTTAC------GG-C--ATTAACA-AGCAGC-----TGACGGATAAGCTG-CAGAG-A-GTACAGAACACAGCAGCCCGACTTATTACACGAACACGGAAATCGT---ACCATATAACTACGGTACTGATGCAG--CTACACTGGCTTCCAGTG-AGTTCAGAAGCCAATACAAACTTTTATTGTACGTCTTCAAGG-CGCTAAACA-ATTTGGCACCTGTATATCTCAAGGGAGCTTATCAAGCCGTACACAAACCCTGCGAGATTATTGCGCT-CGGAATCAAAATCAT-TTTTTTCAAGTTCCATC-GACCCGTACAAAAACATATGGAGA
gi|10 : TAC-AATCC-GT---CT-----ATCGG-CTCAT--CACTCAAC-GA-A--AC--T-GC-A---CTC-CTC-GA-GT-CA-------TTATA--AAAT--------A-TCTAC-ACCCTA-ACAA-G--AACTTC-GTTAACTGT-ACTC--T-CATGCT-TGA-TCT-TCAGCTGCAT--CGACGTTA--TATA-TTACCA--TA---TT-T-ATTT-C---G-GA--GAC-TCG-AA-CAC-AC-----GTTTGCCA---TATCT--GACGC-GCTTT-CT----GAT-CAATTC--A---ATT---GAC----CA-ACAG-T---C-C-AA--------G-----T----AAC-AT----A--GGCTC------GA-----GCCT-TA-TC-GGA-TG-----------CAGAA-G---CTCTG-AAA-------T-C-GG-G-TGATCTAAGG---TCG----------------G-ACC-CTC-GGATGA------------CGCATGTTTCCAAACCTAATCGGA-AA-C--ATCTGTACGAAC--CATCA-CA-TGCAATACCAC-TG-CTTGCAGA-T-GACACTC-A--AATATACATC--G-TGA--T---------AGAGCC-CG-CTA--TGACTTAG--A-GAT-GTTCGTCCCC---TCTTAATAAC--TCT-CAC-----CGGACATCAGATC-----AT-GATGTTTAC-TAATCTTCTGAAGTTGAACCCAAGAT-AAAAC-GAA-T-TAA-C--TTTTT---CTCC
gi|11 : A-CA-A---TAGCCAGGTA-GT--A--AAAAACTT-T-----GGGGGCTTTTTTATG-A---AA-ACCTAAGCGATGGGAAAAC--CATCTGGT-GCAA
gi|16 : ctgtaaatgtattaacaaagccaataggacgaaaaatttgcccgaagaaccaatactatgtcatatcacgttaacagctcgacgacacgcagggtctatttagtaataaaatcgttcagacaactgggtctaaatgtttacaaagagacttcgaagcctgctttatatacagcatatatcagcaccaattggattagtttcatgcaaatatgctagataatgaaccacgacaagacagaagcttattgtgtatcagaccatcgagaaacagcaagccgtaaaCTTT-CGATGTGA--TCGA-TCATTA--GAAGATACC-TTTTAC---ATACTAGTC-TCG-AA--AT-AGAGATGTAAAGGGAAATTAACACTGCCTCTGCTTG-ATCTTGGATACAA-TCATA---TTCTGAAAG----TG-ACAA-T---GTC-AGC------TG-----T----AGCCGT----TTTGGTTTCCGAACT------GTCT-GAATC-CCA-GG------A----------A---CT-TATCGA-------TCG-GTAG-TTCCGCAAGGG--TCT----------------GTGTGGCTC-GGCTCGAG--T----TGCC-T-TGTTC----AGGCAACCGATAGA-ATAATATGT--GA-CTTCATGT-CG-TGGACTATCACTTA-GAgtggccaagtactgttataattccagtttagaggaacataggaagaatcagataacctcatcgacgatcggtacatacaaaacataatatctcactgctcttcgctcacatcaagactagactatgctaat
gi|18 : -TGTAATGTCTCGCCTTGACTACGG-AAATG------GACTCCTC------TA-C--ATT-A-A-AACAGCGTATTTAACA---AAGCTG-CA-AA-acttgtag
gi|2 : CACGAATCCTTGCTATATACCAC--GAGAT------ATACAAA----ACAAAGTGTCGCCATTTATAG--TAA-TT-CTAA--AA-CA-AAGCCAAGACCAGGGTT---T-------CTCT----AGAAAAAG-AACTGAGTGGTGAA-GTGACTCGAAGGCATTGTATGATCCTGACAGA-C-CG--CTTCTTGGAAACAATCATAAGCCCGTCTCTACCCA-CCAGTGACTG-TGCCATCGC-TTTGTCCC-AACAGCTTTTTCTGAT--T-TTTCACAGGGA-AGATCCAGACGCATCAGA--GCT-----TGCT--G-A--TGA-GGCGAACCAAACTAAGTGACTTAGAAA-CTGAATGCTTTGAG-AG-TAGAATATTAAGTTTCAGTG--TCA-CACCCTTGATGAGTTTAC--TGCAGCATCG---TGTG-ACGAG-GTGAAAAAAACTG---C-TCAC--GAGCTCAACAT-CTTA-AGTCCTGTGAAC-TTGA--TTTCCTATCTC-GACTTTCCTGCTTAA-CAGTG-T-GTTGACGCCTTCGTTCTG-GTAATCACAACAATAGTT-AAC-A-AATCCA-TTGTTGTGAATCCTGGG-TGGTACCGATGA-ATTTCGAAACAGGC-ATC-GTCA-GG-CCGC-TGTT--TAAGAAGCCG---GGTT----TAGAC-AAGAAGTTCTTTAA--AA-C-TATCAACCCCG-TCTCGAATCTT-CCATTTGTGTCGAAAATTGTTG-AGAAGATTGTTGC-AA--GAGAATA-GACCGT-------CATT-T--G-ACCTT-TAACTTTCTA-CATGAC-AACTTAC-AATCT-GC---GT-----ATCG--CTCATGTCATTCCACAGAGA--ACAAA-A--A---CTT-CTCAGA-GTACA-------TCATG--ACAT--------T-G-GACTGCATTAGACAG-C--AACTGCTGT--ACTGT-CCTTGATAAAGGTT-AGA--CTGTCAGCTGCTTTCCGATGTCAATTTGA-TCATCAACCA---TTCT-GTTTCC---A-GC--GCCTTCGAAA-CAC-AC-----TTACGGGA---TAGCAG-GGTTCTGCATTAATCGTGGAT-CAAGTCGTA---CTT---AAG----TG-ACA-GT---CTC-AA---G---TG-----TAA--AGCCAT----T--GGCTT------T------GTCT-TA-TC-TGA-CA------A----CAGACCAG--CT-TG-AAA-------TAT-GT-G-TGCCAC-AGGC--TCT------------------GTG-CTTGGGACCAAAACT--A-TATTGTATG-TCTCAAAGCCGATCGGT-GA-A--ATCTGT-CGC-TTTCATGACCG-TGAAATATCACATA-AATGCAGA-T-GACACGCAA--AATCTACATT--GTTGGGTT---------CGAACA-GT-GGA--AAAATGGG--AGGACAAT--ATCACCAAGACTCAAGAATTGTCTCCTC-----TG------GGATCCGTGAATGGATGAGCATCCAATTTACTGAAGCTGAA-TCAGG-C-AAGACTGAA-C-TGA-TGA-TTTCG---TCCGAAACATC--GCG-TAA-AAC--GTAGC------TGA-ACTAAGTATCTC--GTTCGGAGGACTGTGTCAT--TCAGCA-A---T-GCTCCGTACGTAAA--AAAAAACC-T-----GGGTTCTTATTT-TGAACAGAACCCCTTTGC-ATGGAAAAACCAAATGCAAC-GCAATAAAGGAGGTCGTGTCT-ACTT-GAACATTC-GA-ATATT-GGGAAGTATCCGTCAGTGTATCTTCA-----GAGGTTGCATGT-AAGACGCCTCGT-CA-
gi|20 : TGCCGATGA-ATTTCA-AACAGGCCATC-GTCA-GG-CCGC-TGTT--GAAGAAGCCG---GGTT----a
gi|21 : AT-CAATTTCCTGAAGCTGAA-TCAGGAC-AAG
gi|3 : CACGAGT-CTTGCTATATACCAC--GAGATGAGAATATACAAA---G-CAATGTGTCGCC-TTTATAGAGTAAATTACTAA-----CACAAGC--AGAC-AGA-TTACTTTTCTCTCCTCT----AGAAAATT-A-CTGAGTGTG--A-GTGACTCAAAGGCATT-TATGGGCCTGA-A-A-C-CGGACTTCTTGGAAACA-TCA--AGACT-TCTCTCTCCAGCCAGCGCCTG-TGACA--GC-TTTGTCCGAAACAGATTTT-CTGAAAAT-TTTCACAGGGCCAGATCCAGAC-CATCAG---GCT---A-TGCTT-GCAATTGA-GGCGAACCAATCTAAGTGACTTAGAAA-CTGAT-GCT--GAG-AGGCCGA-TATTAA--TTC-GTGGATCA-CACC-TTG-TGAGTTTAC--TGCAGCATCG---TGTGGACGAG-GTGAAAAAA-CTG---CCTCACTTGAGCTCACCA--CT-A--GTCCTGTGAAC-TTGA--T--CCTATCCC-GACTTTTCTGCTTAAACAGTG-T--TTGACGC-TTCGTTCCGAGTAATCACAACGATAGTT-AAC-AGAATC-A-TTGT-GCGAATCT--GT-TG-TGCCGATGA----TTG-AA-AAGCCATC-GTCA-GG-GCGC-TGTT--GAAGAAGCCG---GGTT----TGGACAAAGAAGTC--TTAA--AA-C-TATC-GCGCGG-TTTCGAATCTT-CCATTTGTGTCGAAA-TTGTTG-AGA-GATTGTT-CAAA--GAGAATA-GACCATTCACACACATT-TTGG-A-CTT-CAACTT-CT--CATGTC-AA-TTGC-AATCT-GC---GT-----ATCGGCTTCA-GTCATCCTACAGA-AGTAC--A-G--A---CTT-CTCAGA-GTACA-------TCATG--ACAT--------T-GCG-CTGCATTAGACAA-TCTAACTGCTGT--GCTGT-CCT-G-T-AATGTTTAGATCCTGTCAGCTGCTTT-CGATGTCA--TTGA-TCATCA--CA---TTCT-GTTT-C---G-GC--GCC-TCG-AA--ACAAC-----TTACGGGA---TAGCA--G--TTTGCATT--TCGTGGAT-C-AGT-GTA---CTT---AAG----TG--CATAT---CCC-AAT--GGT-TG-----T----AGCCAT----T--GGC-T------T------G--T-TATTC-GGC-CG------------AGA-CA---CT-TG-AAA-------TACGGT-G-TGCCACAAGGC--TCTTGAGGGGGGGGGGGGGG-GTG-CTT-AGACC-AAACTAAA-TATCGTATGTTCTCAAAG-CGATCGGT-GATA--ATCTGT-CGA-CTTC-TGA-AA-TGCAATATCACATA-TATGGCGA-TAGACACGG-C--AATCTAC-TT--G-TGG--T---------CGAA-C-AT-GGA--AAATTGGG--AGGAC-AT--ATCACCAAGACTCAATAATTGTCT-CTC-----TG------AGATCCGTG--TGGATGAGCAT-CAATTTCCTGAAGCTGAA-TCAGGAC-AAGACTGAATC-TGA-TGGTTTTCG--CTCCGAAACATC--GC-CTAAGGAC--GTAGC------T-A-ACT-AGCATCTC--GTTCGGAGG-CTGTGTCTTCATCA-CG-A---T-GCTCCGTACGT-----AAAAAACC-T-----GGGTGCTT-TTT-TG-ACAGAA-CC--TTGC-ATGGAAAACC--AATGC-AC-GC-AT-AACG-GGTCGTG-CT-ACTTGGAACATTCGGG-ATATT-GG--CGTATCCGT-AGTGTATC-TCT-----GAGGTGGCCAGT-AAGACG-CTCGT-CA-
gi|4 : gCACGAGTTCTT-CTATATACCAC--GAGAT------ATACAAA---GACAATGTGTCGCC-TTTATAGAGTAAATTACTTA--ACACA-A-GC--AGAC-AGGATTACTT-------TTCTTTCTAGAAAAAT-TACTGAGTGTGGAA-GTGACTCAAAGGCATTGTATGG-CCTGAAA-A-C-CG-ACTTCTTGGAAACAATCA--AGACC-TCTCT-CCTAGCCAGCGACTG-TGACATAGC-TTTGTCC--AACAGATTTT-CTGAAA-T-TTTCACAGGGA-AGATCCAGAC-CATCAGG--GCT---AATGCTT-GCA--TGA-GGCGAACCAA-CTAAGTGACTTAGAAAACTGAT-GCTTTGAG-AG-CAGA-TATTAAGTT-CAGTGG-TCA-CACC-TTGATGAGTTTAC--TGCAGCATCG---TGTG-ACGAG-GTGAAAAAA-CTG---C-TCACT-GAGCTCACCA--CT-A-AGTCCTGTGAACCTTGA--T--CCTATCCC-GACTTTTCTGCTTAAACAGTG-T--TTGACGC-TTCGTTCCGAGTAATCACAACGATAGTT-AAC-A-AATC-A-TTGT-GCGAATCT--GT-TG-TGCCGATGA-ATT--A-AACAGGCCATC-GTCA-GGGCCGC-TGTT--GAAGAAGCCG---GGTT----TGGACAAAGAAGTC--TTAA--AA-C-TATC-GCGCAG-TTTCGAATCTT-CCATTTGTGTCGAAA-TTGTTG-AGAGAGTTGTT-CAAA--GAGAATA-GACCAT-------CATT-T--GGA-CTT-CAACTTTCTA-CATG-C-AA-TTGC-AATCT-GC---GT-----ATCG--CTCATGTCATCCTACAGA-AGTAC--A-G--A---CTT-CTCAGA-GTACA-------TCATG--ACAT--------TTGCGACTGCATTAGACAATC--AACTGCTGT--GCTGT-CCTTG-T-AATGTTTAGA-CCTGTCAGCTGCTTT-CGATGTCA--TTGA-TCATCA--CA---TTCT-GTTT-C---G-GC--GCC-TCG-AAACA--AC-----TTACGGGA---TAGCA--GGTT-TGCATT--TCGTGGAT-CAAGTCGTA---CTT---AAG----TG-ACATAT---CTC-AAT--G---TG-----T----AGCCAT----T--GGCTT-------------GTTT-T---C-GGC-CG------A------GAC-A---CT-TG-AAA-------TAG-GT-G-TGCCACAAGGC--TCTT---------------G-GTG-CTT-AGACCAAAACT--AATAT-GTATGTTCTCAAAGCCGATCGGT-GATA--ATCTGT-CGA-CTTCATGA-AA-TG-AATATCACATA-TATGCAGA-T-GACACGC-A--AATCTACATT--G-TGG--T---------CGAAC--AT-GGA--AAATTGGG--AGGAC-AT--ATCACCAAGACTCAATAATTGTCT-CTC-----TG------AGATCCGTGAATGGATGAGCAT-CAATTTCCTGAAGCTGAA-TCAGGAC-AAGAC-GAA-C-TGA-TGGTTTTCG--CTCCGAAACATC--GCGCTAAGGAC--GTAGC------TGA-ACTAAGCATCTC--GTTCGGAGG-CTGTGTCAT--TCA-CAGA---T-GCTCCGTACGT-----AAAAAACC-T-----GGGTGCTTATTT-TG-ACAGAA--CCTTTGC-ATGGAAAACC--AATGC-AC-GC-AT-AACGAGGTCGTG-CTAACTT-GAACATTCGGA---ATT-GG--CGTATCCGT-AGTGTATC-TCT-----GAGGTTGCAGGTAAAGACG-CTCGT-CA-a
gi|5 : gCACGAGT-CTTGCTATATACCACACGAGAT------ATACAAAAAGGACAA-GTGTCGCC-TTTATAGA---AATTAC-AATCAAA-A-AAAC--AGAC-AGA-TTACTT-------CTCT----AGAAAAAATAACTGAGTGTGGAAAGTGACTCGAAGGCATGATATGG-CCTGACA-A-AACG-ACTTCTTGGAAACAGTCAAGAGCCC-TCTCTAACC--CCAGTGACTGTTGACATCGCATTTGTCC--CATAA--------GATA-TGTTTCACCAGGA-AGATCCAGAC-CATCAGAGGGCTATAA-TGCTGAGCA--TGAGGGCGAACCAA--TACGTGACTCAGAAA--TGA-TGCTTTGAGAAG-CAGA-TATTAA-TTACAGTGG-TCAGCACCCTTGATGAGTTTACTTTGCAGCATCGAGATGTG-ACGAG-GTGAAAAAA-ACGAGAC-TCAC---GGCTCATCATACT-ATAGTCCTGTGACA-TTGAATTC-CCTATCCCGGACTTTCCTGCTTAGACAGTGAT-GTTG------TTGTT---GGTAATCACAACGATAGTTAAACAA-AATC-ATTTGT-GCGAATCTA-AA-TGGTACCGATGAGATTTCA-AACA-GCAATCAGTCAGGG-CCGCTTGTTGAGAAGAAGCCGAGAGGTTTGTGTGGAC-AAGAAGTTCTTTAATTTA-CGTATC-GCCACGTTTTCGAATCTTACCA-TTGT-TCGAAAATTGTTGAAGAAGATTGTTGCAAAAGGAGAATA-----TTT-----ACATTATG-G-A-CTTGCAACTTTCTACCATGACAAACTTGCAAATCT-GCTTTGTTCTNNNNNN--NNNNNNNNNNNNNNNNNN-N--GC--ATGTCA---TTT-TACAGA-G-ACAGCACTTCTCATAGTACATCATGACATT-GCGACTGCATTAGACAA-C--AACTGCTGT--GCTGT-CCTTG-T-AATGTT-AGA-CCTGTCAGCTGCTTT-CGATGTCA--TTGA-TCATGA--CA---TTCT-GTTT-C---G-GC--GCC-TCG-AA-CTC-AC-----TTACGGGA---TAGCA--GGTTCTGCATT-ATCGa
gi|6 : aatagtaggacatattgataaaacacatgagggacaacagataactatcttgcaggcaagtccccggtgtcagatagtcagtacttgtgtgactataaggagtatgtcctcctcaggatcataaatgggaatttacactttactgccaaatttctacgatttcgacgcaacacaaaacgggtttccttcaggaattacgcaatatcataacttaacgaatttaataaagatacattgaaaaacgtcaactgcagctgtatcagcagtaaatacaggttgacatctcgtcaaaattctaaataagaatgcgcgcagaggtctttggacaagcattgcttttttacaatcaaaagagatcgtcctgcggaccgaactctccatgggtactcggatgaattgcgagaaagccaaacgcgacatgacgaaaaaccggaagcgtgagtggacaCACGA--TCTTGCTATATACCAC--GAG-T------ATACAAA---GACAA-GTGTCGCC-TTTATAG--TAAATTACTAA--AA-CA-AAGC--AGAC-AGGGTTACT--------CTCT----AGAAAAAG-AACTGAGTGTG-AA-GTGACTCGAAGGCAA-GTATGA-TCTGACA-AAC-CA-GCTTCTTGGAAACAATCATGAGCCC-TCTCTACCCA-CCAGTGACTG-TGCCATCGC-TTTGTCC--AACAGCTTTT-CTGAAT-T-TTTCACAGGGA-AGATCCAGAC-CATCAGA---CT---A-TGCT--GCA--TGA-GGCGAACCAAACTAAGTGACTTAGAAA-CTGATTGCTTTGAG-AG-TAGA-TATTAAGTTTCAGTGG-TCA-CACCCTTGATGGATTTAC--TGCAGCATCG---TGTG-ACGAGTGTGAAAAA--CTG---C-TCAC--GAGCTCAACAT-CT-A-AGTCCTGTGAAC-TTGA--TT-CCTATCCT-GACTTTCCTGCTTAAACAGTG-TTGTTGACGCCT-CGTTCTG-GTA-TCACAACAATAGTT-AAC-A-AATC-A-TTGT-GTGAATCT--G--TGGTACCGATGA-ATTTCG-AACAGGCAATC-GTCA-GG-CCGC-TGTT--TAAGAAGCCG---GGTT----TAGACAAAGAAGTTCTTTAA--AAAC-TAT--ACCCCG-TCTCGAATCTT-CC--TT-TGTCGAAAATTGTTG-AGAAG-TTGTTGCAAA--GA--ATAAGACCGT-------CATT-T--G-A-CTT-TAACTTTCTA-CATGAC-AACTTAC-AATCT-GC---GT-----ATCG--CTCATGTCATTCCACAGA-G--AC--A-A--AACACTT-CTCAGA-GTACA-------TCATG--ACAT--------T-GCGACTGCATTAGACAG-C--AACTGCTGT--ACTGT-CCTTG-T-AAGGTT-AGA-CCTGTCAGCTGCTTT-CGATGTCA--TTGT-TCATTA--CA---TTCT-GTTT-C---A-GC--GCC-TCG-AA-CAC-AC-----TTACGGGA---TAGCA--GGTTCTGCATT-ATCGTGGAT-CAAGTCGTA---CTT---AAGGAGCTGCACAGGTATCCTCAAAC--GCTCTGACCGATGATAAGCCATGGACT--AGCTT------T------GTCTCTACTCTAGACCGAGATATA----CAGACTC---CT-TA-AAATAAAGACTAT-GT-GTTGCCACAAAGCTGTCTA---------------G-GTG-CT
gi|7 : ggcgACGTGC-AATCTTGC---AT-----ATCG--CGCTTGTCACTCTACCGA-A--AC--T-G--CT--CTTACTTACATGTTCA-------TCACG--ACAT--------T-GTGTCTGCATTAGACGG-A--AATTCTTGT--A-TGTCCCTTG-T-GATGCT-CGA-CCTTTCTGCCGCCTT-TGATGTGA--TAGATTCACAA--CA---TTCTCATCT-CATTG-G--------CG-A--------------TATGGAA---TATCT--GGATCAGCATT-GGCATGGTT-TAGATCATATCTCCT----GG----TC-GCAG------TC-AGCAGG---TT-----T-----GCAAT----T--GGTTT------TAAAACAGTTT----TC-AG--CG------ATGTTCAGGCTATGTTT-TG---------------GC-G-TTTCCCAGGGC--TCT----------------GTGTG-----GGACCACGTCT--T-TACTGCATGTTTTCTAAACC-ATTGGT-GA-A--ATATGC-CGA-CGTCATTA-CATTGTGCTATCAC-TGTTATGCCGACT-GACACGC-AGGAA--TATATG--G-TTA--TAAAACCTAACGAACC-CT-GAACCAGAATTGC--A-GAC------------AGACTTCAAAAGTGCCT-CTCAAATATA------AGCCCC-----TGGATGAA-GT-CAA-ATACTAAAACTAAA-TCAGGACAAAAACTGAA-CTTGATTCATTTTTG--CTCCCAAAAA----G----AAGATCTTGTGACTTCTTTTAG-ATTTGTCAACTCACATTTGGAGG-ATCGATCAT--T-A-CA-AG--T-GTGTCGTGCGT--T--AAAAAACCTT-----TGGTGTTTTCTT-TG-ATAAGA-TCTAT--C-ATGGAacattgatccaaaaaata
gi|7 : TCAT-CA-GATCACT-TGTAATGTCTCGCCTTGACTACGGAAAATGC-CACTC-CTCTACTCTGTTAACC--GTTAA-A-AACAGCGTCTTTAACA---AAGCTG-CA-AA-ATGTAC-GAACAC-GCTGCTCGACtttcccaataaaacatctagtcaaactgtgctactcccaacttaaaaacatcgatagaattagtaactgtccaacaatcatcagatcacttgtaatgtctcgccttgactacggaaaatgccactcctctactctgttaaccgttaaaaacagcgtctttaacaaagctgcaaaatgtacgaacacgctgctcgac
gi|8 : acgtgcaatcttgcatatcgcgcttgtcactctaccgaaactgctcttacttacatgttcatcacgacattgtgtctgcattagacggaaattcttgtatgtcccttgtgatgctcgacctttctgccgcctttgatgtgatagattcacaacattctcatctcattggcgatatggaatatctggatcagcattggcatggtttagatcatatctcctggtcgcagtcagcaggtttgcaattggttttaaaacagttttcagcgatgttcaggctatgttttggcgtttcccagggctctgtgtgggaccacgtctttactgcatgttttctaaaccattggtgaaatatgccgacgtcattacattgtgctatcactgttatgccgactgacacgcaggaatatatggttataaaacctaacgaaccctgaaccagaattgcagacagacttcaaaagtgcctctcaaatataagcccctggatgaagtcaaatactaaaactaaatcaggacaaaaactgaacttgattcatttttgctcccaaaaagaagatcttgtgacttcttttagatttgtcaactcacatttggaggatcgatcattacaagtgtgtcgtgcgttaaaaaacctttggtgttttctttgataagatctatcatggatttcccaataaaacatctagtcaaactgtgctactcccaacttaaaaacatcgatagaattagtaactgtccaacaaGCTGA-C-GACACGC-A--GGTC--CATTTAG-TGA--T---------AAAACC-GTTAGA--CAACTGGACTAAGTT--T--AT-AGAAAGACTCGAAGCCTGTTT-AGC-------------AGAT----------ATCAGCA---AATATGCTGAAATTGAA-CCATGAC-AAGGCAGAG-T-TGA-TAGTTTTCGGACCTCGAAACAGCAAGCGTTA----C--CTAGC------TAATACCA-GCATTAC--TTTCGATGG-ATTTGTCAT--T----A-AGTCT-GTTCCG---GT--ATTCAAAAACT-TAGGGGGGGGGGGTATTT-TG-ACGAAA-ATCTTAGC-ATGAGATACC--A-TTTGTCTGCAAT-GGCTAAGTTTTG-TT-ATTT-------CCAG-----TT-GA---------GT-AACATACC-TCATCGACGATGATACATGC-AAAACA-TTAATACATGCTC--T-CGTCACATCAAGGCTAGACTATGC-TGATGC-A-TTG-TTATAT------GG-CCTATCTA-ACAGT-GC-----TAACAA-CAAATTAGTA-CG-T-GTACAAAATACCACAGCAAGGATGATCAGTCG--CACTAAAA-AGTATGATCATATTACACCGGTATTGA--CAGACCTTCATTGGCTTCCGGTACAGTATTGTATTCAATTCAAAGTTCTTGTGCATGCCTACAAGGCCGTT---CAGATTTGG-ACCTA-----CTC-----ACCTTAGCTAACTG-ACTC-AACC--------TTATT---CTCCAGAA--AACAGTATGCTTTTGAAAGTTCC-TCGGACTAGAACGAAGTCATATGGAAA
gi|9 : CGTGT-CGAACA-ATCTT-CA-GGTCACT-TGTAATGTCTCGCCTTGACTACGG-AAATGCAC-TTC-CTCTAC------TC-T--GTT-A-A-AACAGCGTCTTTAACA---AAGC-A-CA-AACATGTACAGAACACTGCTGCTCGACTcagacgcttgactattttgcgccaataatgtggatcgcctaaccatcaggattatattgtgccaaatcactggat
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ATAGCGGGACATATGTCCCGGGACATAAGTCCCGGACTACAATACACCCACCCCTATGTTGCAGGCAGTCCCGCGTGTCCGATAGTCCAGTACTTGTGGTGACCTCAAGGGTATGTCCTCGTTGCTCAGTCATATGGGAATTTACACTTTAACTGCAAATATCTACGATTTCGACGCAACACAACGGTTTCCTTCAGAAATTCAACGCAATGTCTCTTAACGAATTTCAATAAAGATATTGACGTCAAACTTGCGATGTATCGCAGTGATATACAGTTGGACATTTTTGTTGAAATTATATAGATAGAATGCGCGCGAGGTCCCTTGAAACAAGCATGCTGCTTTAGCAGTCAAAAGAGATCGTCCTGCGGCCGAACTTCTCCGTGGTTACTCGATGCTTTGGCGACAGACGGAAATCCGAGCGTGAGTGGAGGCCG
Unaligned ( gi|13 ): CAATCGCGGGACATATGTCCGGGACATAAGTCCCGGACTACAAATACACCCACCCCATGTTGCAGGCAGTCCCGCGTGTCCGATAGTCAGTACTTGTGTGAATCTCAGGTAGTTGTCCTCCTCAGATCATATGGGAATTTCAACTTTACTGCAAATATCTACGATTTCGACGCAACACAAAACGGTTTCCTTCAGGAAATTACGCAATGTCTAACTTAACGATTTCATAAAGATATTGAAACGTCAACTGCGATGTATCCGCAGTGAATACAGTTGGACATTTTGTTGAATATAATAAGAATGCGCGCGAGGTCTTGAACAAGCATGCTGCTTTACAGTCAAAAGAGATCGTCCTGCGCGGCCATCTCCGTGGTTACTCGACTGAATTGCGACAGACGGAAATCCGAGCGTGAGTGG
Unaligned ( gi|14 ): TATGTTGCAGGCAGTCCCGCGTGTCGATAGTCAGTACTTGTGGTGACTCTCAGGGTATGTCCTCCTCAGATCATATGGGAATTTACACTTTACTGCAAATATCTACGATTTCGACGCAACAACAAACGGTTTCCTTCAGGAAATTACGCAATGTCTAACTTAACGAATTTCAATAAAGATATTGAAACGTCAACTGCAGATGTATCCGCAGTGAATACAGTTGGACATTTTGTTGAATTATATAATAAGAATGCGCGCGAGGTCTTGAAACAAGCATGCTGCTTTACAGTCAAAAGAGATCGTCCTGCGGCCGAACTCTCCGTGGTTACTCGACTGATTGGCGACAGACGGAAATCCGAGCGTGAGTGGAGCCG
Unaligned ( gi|15 ): TCTTGCGAACTAGAAGTCCAATTCCAAACAAATCTGCTTAAGCAATGTTTGAACTCTGTGCTTCCTATTGATACGAAATCATAAACAGATCATTTTCAAAACTCAACAGGACGCACCCTCGTTGTAAGAATGCTAATGTTCGACCACTTATCAAGCGACCAATGGCTAGACAAAGACGAATGTAAGAAATTATGCGTCCGGTATCCGAATTACCGTTCTGAGGCTAAAAGTCCTTGAAAAGCCGGTAGCATCGCGATTGGACAAACACACCGCGATTATAAATGATCTGCAACG
Unaligned ( gi|17 ): TGGGGGCTTATTTTGGATGAAACTAAGCATGGAAAACATCTGTCTGCACTCTGAGTGGCCAAGTCTTGTTATTTTCCAGTTGAGGAACATAGGAAGAATCAGATACTGCCACCTATGAACTCGTTTTAACAAAACTTGAT
Unaligned ( gi|19 ): CCACGTGCAACTGCATATCACGCTTGTCACTCTACCAAACTGCTATACTACGTGTTCATCACGAGA
Alignments
lowQualScore : 111 111111 111 2 22 11111 2222222 1111 1 1 11 1 11 111 111 11111 22 1 11 111 111 11 11 11111 1 11 1 22222 111 111 1111 3333333 11 11111 11 1111 22222222 1111111 11111111 1111 1 11111 11 11 1111 222222 3333333333333333333 1111 555555555555555555555555555555555555555555555555555555 22222222222 555555555555555555 11111111 11 222222222 111111 11111 2222222222222 111111 22222222 111 111 33333 11111 11 1 2222 111 1 222222 111 333333333333333333 111 111 3333333 444444444 55555555555555 5555555555 111 111 1 222 1 1 22222 22222 1 1 33333333 222 1 11 1 1 1
lowQualScore : 888 99 999999 111 0 6 88 88888 6 99 6 9 1111111 4444 77 5 6 44 3 2 6 777 88 1 55 6 3 3 0 6 1 6 55 6 6 999 6 6 6 000 77777 22 99 6 1 6 00 6 6 6 6 3 6 6 6 99 111 6 6 6 111 6 55 1 44 6 6 6 66666 6 7 3 6 44 2 8 6 6 6 6 6 6 22222 6 5 5 6 5 5 5 5 222 000 2222 7 6 6 99 6 6 6 6 7 6 1 1 6 99 6 3333333 6 55 6 6 6 6 3 6 4 5 5 888 22222 11 0 1 4444 66666666 5 5 5 0 6666666 66 88888888 5 0 0000 66 5 5 5 0 5 4 66 4 66 777 4 8 99999 66 4 4 99999 11111 777 00 0 00 5 1 0 888 888 0000 5 000000 5 6666666666666666666 66 0000 333333333333333333333333333333333333333333333333333333 5 3 33333333333 5 66 555555555555555555 5 88 55 0 66666666 0 0 1 5 99 5 77 1 7777 6 8 66 1 5 5 8888 77 5 77 222222222 999999 5 77 1 77 6 55555 0 1 1 5 6666666666666 666666 0 5 1 5 5 8 666 5 666 77 3 99 77 5 99 22222222 6 000 6 99 666 5 555 5 0 22222 5 44444 5 5 5 22 5 5 1 99 2 6 7 8 0 8 8 8 3 0000 8 222 5 8 111111 6 6 5 5 1 9 8 1 1 1 8 666 5 888888888888888888 88 111 444 0 5 4444444 3 22 1 1 333333333 22 7 66666666666666 1 22 88 5555555555 1 3 444 1 1 1 555 1 1 22 1 5 111 5 5 77777 66666 1 1 1 5 1 5 44444444 000 5 88 1 1 5 22 5 5 1 1 1
lowQualScore : ... .. ...... ... . . .. ..... . .. . . ....... .... .. . . .. . . . ... .. . .. . . . . . . . .. . . ... . . . ... ..... .. .. . . . .. . . . . . . . . .. ... . . . ... . .. . .. . . . ..... . . . . .. . . . . . . . . ..... . . . . . . . . ... ... .... . . . .. . . . . . . . . . .. . ....... . .. . . . . . . . . . ... ..... .. . . .... ........ . . . . ....... .. ........ . . .... .. . . . . . . .. . .. ... . . ..... .. . . ..... ..... ... .. . .. . . . ... ... .... . ...... . ................... .. .... ...................................................... . . ........... . .. .................. . .. .. . ........ . . . . .. . .. . .... . . .. . . . .... .. . .. ......... ...... . .. . .. . ..... . . . . ............. ...... . . . . . . ... . ... .. . .. .. . .. ........ . ... . .. ... . ... . . ..... . ..... . . . .. . . . .. . . . . . . . . . .... . ... . . ...... . . . . . . . . . . . ... . .................. .. ... ... . . ....... . .. . . ......... .. . .............. . .. .. .......... . . ... . . . ... . . .. . . ... . . ..... ..... . . . . . . ........ ... . .. . . . .. . . . . .
lowQualScore : 222 22 222222 777 0 7 88 77777 7 22 7 3 7777777 2222 77 0 7 22 3 5 7 555 33 7 33 7 2 3 7 7 0 7 88 7 7 333 7 7 7 888 55555 55 22 7 7 7 88 7 7 7 7 5 7 7 7 22 777 7 7 7 777 7 88 0 00 7 7 7 77777 7 3 3 7 00 2 0 7 7 7 7 7 7 77777 7 7 7 6 7 7 7 7 111 000 1111 3 7 7 22 7 7 7 7 3 7 7 7 7 22 7 3333333 7 88 7 7 7 7 5 7 3 0 0 888 55555 99 5 4 8888 00000000 0 0 0 4 2222222 99 11111111 0 4 1111 99 0 0 0 0 0 4 11 4 11 888 4 9 33333 11 4 4 44444 11111 888 66 1 77 0 4 2 888 888 6666 0 000000 0 5555555555555555555 99 6666 000000000000000000000000000000000000000000000000000000 0 2 99999999999 0 99 666666666666666666 0 44 00 3 00000000 1 7 7 7 33 7 11 4 7777 6 7 77 6 7 7 0000 99 7 99 999999999 000000 7 99 0 99 6 11111 7 4 0 7 7777777777777 666666 7 0 0 0 0 7 000 7 111 99 2 22 77 2 22 77777777 7 888 7 22 888 7 777 7 7 33333 7 33333 4 7 7 33 4 7 0 22 0 7 3 0 8 0 0 0 2 6666 0 000 0 0 444444 7 7 7 7 0 8 0 0 0 0 0 000 0 666666666666666666 88 222 000 8 6 0000000 2 88 0 2 777777777 00 3 77777777777777 0 00 00 0000000000 0 7 777 0 0 0 000 0 0 00 0 0 555 0 0 55555 00000 0 0 0 5 0 5 00000000 000 0 00 0 0 0 00 5 0 0 0 0
consensus : CACGAGTTCTTGCTATATACCAC--GAGAT------ATACAAA---GACAA-GTGTCGCC-TTTATAGA-TAAATTACTAA--AAACA-AAGC--AGAC-AGGGTTACTT-------CTCT----AGAAAAAG-AACTGAGTGTGGAA-GTGACTCGAAGGCATTGTATGG-CCTGACA-A-C-CG-ACTTCTTGGAAACAATCATGAGCCC-TCTCTACCCA-CCAGCGACTG-TGNCATCGC-TTTGTCC--AACAGCTTTT-CTGANA-T-TTTCACAGGGA-AGATCCAGAC-CATCAGA--GCT---A-TGCT--GCA--TGA-GGCGAACCAAACTAAGTGACTTAGAAA-CTGATTGCTTTGAG-AG-CAGA-TATTAAGTTTCAGTGG-TCA-CACCCTTGATGAGTTTAC--TGCAGCATCG---TGTG-ACGAG-GTGAAAAAA-CTG---C-TCAC--GAGCTCANCAT-CT-A-AGTCCTGTGAAC-TTGA--TT-CCTATCCC-GACTTTCCTGCTTAAACAGTG-TGTTGACGCCTTCGTTCCGAGTAATCACAACGATAGTT-AAC-A-AATC-A-TTGT-GCGAATCT--GN-TGGTGCCGATGA-ATTTCG-AACAGGCNATC-GTCA-GG-CCGC-TGTT--GAAGAAGCCG---GGTT----TGGACAAAGAAGTTCTTT-AA--AAC-TATC-GCCCCG-TCTCGAATCTT-CCATTTGTGTCGAAAATTGTTG-AGAAGATTGTTGCAAA--GAGAAT-AGACCGT-------CATT-T--G-A-CTT-CAACTTTCTA-CATGAC-AACTTGC-AATCT-GC---GT-----ATCG--CTCATGTCATTCCACAGA-A--AC--A-G---A-CTT-CTCAGA-GTACA-------TCATG--ACAT--------T-GCGACTGCATTAGACAG-C--AACTGCTGT--ACTGT-CCTTG-T-AATGTT-AGA-CCTGTCAGCTGCTTT-CGATGTCA--TTGA-TCATCA--CA---TTCT-GTTT-C---G-GC--GCC-TCG-AA-CAC-AC-----TTACGGGA---TAGCA--GGTTCTGCATT-ATCGTGGAT-CAAGTCGTA---CTT---AAG----TG-ACAGGT---CTC-AAC--G---TG-----T----AGCCA--T----TGGCTT------T------GTCT-T-A-TC---GGA-CG------A----CAGACCA---CT-TGAAA-------TAC-GTG-TGCCACAAGGC--TCT----------------G-GT-GCTC-GGACCAAAACT--A-TATCGTATGTTCTCAAAGCCGATCGGT-GA--AATCTGT-CGA-CTTCATGA-CG-TGNAATATCACATA-NATGCAGA-T-GACACGC-A--AATCTACATT--G-TGG--T---------CGAACC----GT-GGA--AAANTGGG--AGGAC-AT--ATCACCAAGACTCAANAATTGTCT-CTC-----TG------AGATCCGTGAATGGATGAGCAT-CAATTTNCTGAAGCTGAA-TCAGGAC-AAGACTGAA-C-TGA-TGGTTTTCG--CTCCGAAACATC--GCGCTAAGAAC--GTAGCT-------GA-ACTA--AGCATCTCGTTCGGAGG-CTGTGTCAT--TCA-CA-A---T-GCTCCGTACGT--A--AAAAAACC-T-----GGGTGCTTATTT-TG-ACAGAA-CCCTTTGC-ATGGAAAANC--AATGCGAC-GCAAT-AACGAGGTCGTG-CT-ACTT-GAACATTCGGG-ATATT-GG--AGTATCCGTCAGTGTATC-TCA-----GAGGTTGCATGT-AAGACG-CTCGT-CA-GNTCACT-TGTAACGTCTCGCCTTGACTACGGAAA-TGC-C-TTCCTCTAC-------GNCGT---TAA-AAACAGCGTCTTTAACA---AAGCTGCAAA-------GTGTACAGAACACCGCNGCTCGACT---TA----TCANTCGAACAC-GAAA--GT---ACCATATNACNCCGGTATTGAT-CAG-C---CTACANTGGCTTCCGGTACAGTTCCGAA-TTCAATACAAANTTCTAGTGCACGCCTNCAAGGCCGCTAAACAGATTTGGCACCTGTATATCTCAAGGGANCTTANCNAGCCGTACNCAAACCCTGCGAGATTATTGCGCTCCGGAATCAANANCATGCTTTTNNAAGTTCCATCGGACCNGNACGAAGNCATATGGAGA
Reference ( family-1163 ) : CACGAGTTCTTGCTATATACCAC--GAGAT------ATACAAA---GACAA-GTGTCGCC-TTTATAGA-TAAATTACTAA--AAACA-AAGC--AGAC-AGGGTTACTT-------CTCT----AGAAAAAG-AACTGAGTGTGGAA-GTGACTCGAAGGCATTGTATGG-CCTGACA-A-C-CG-ACTTCTTGGAAACAATCATGAGCCC-TCTCTACCCA-CCAGCGACTG-TGNCATCGC-TTTGTCC--AACAGCTTTT-CTGANA-T-TTTCACAGGGA-AGATCCAGAC-CATCAGA--GCT---A-TGCT--GCA--TGA-GGCGAACCAAACTAAGTGACTTAGAAA-CTGATTGCTTTGAG-AG-CAGA-TATTAAGTTTCAGTGG-TCA-CACCCTTGATGAGTTTAC--TGCAGCATCG---TGTG-ACGAG-GTGAAAAAA-CTG---C-TCAC--GAGCTCANCAT-CT-A-AGTCCTGTGAAC-TTGA--TT-CCTATCCC-GACTTTCCTGCTTAAACAGTG-TGTTGACGCCTTCGTTCCGAGTAATCACAACGATAGTT-AAC-A-AATC-A-TTGT-GCGAATCT--GN-TGGTGCCGATGA-ATTTCG-AACAGGCNATC-GTCA-GG-CCGC-TGTT--GAAGAAGCCG---GGTT----TGGACAAAGAAGTTCTTT-AA--AAC-TATC-GCCCCG-TCTCGAATCTT-CCATTTGTGTCGAAAATTGTTG-AGAAGATTGTTGCAAA--GAGAAT-AGACCGT-------CATT-T--G-A-CTT-CAACTTTCTA-CATGAC-AACTTGC-AATCT-GC---GT-----ATCG--CTCATGTCATTCCACAGA-A--AC--A-G---A-CTT-CTCAGA-GTACA-------TCATG--ACAT--------T-GCGACTGCATTAGACAG-C--AACTGCTGT--ACTGT-CCTTG-T-AATGTT-AGA-CCTGTCAGCTGCTTT-CGATGTCA--TTGA-TCATCA--CA---TTCT-GTTT-C---G-GC--GCC-TCG-AA-CAC-AC-----TTACGGGA---TAGCA--GGTTCTGCATT-ATCGTGGAT-CAAGTCGTA---CTT---AAG----TG-ACAGGT---CTC-AAC--G---TG-----T----AGCCA--T----TGGCTT------T------GTCT-T-A-TC---GGA-CG------A----CAGACCA---CT-TGAAA-------TAC-GTG-TGCCACAAGGC--TCT----------------G-GT-GCTC-GGACCAAAACT--A-TATCGTATGTTCTCAAAGCCGATCGGT-GA--AATCTGT-CGA-CTTCATGA-CG-TGNAATATCACATA-NATGCAGA-T-GACACGC-A--AATCTACATT--G-TGG--T---------CGAACC----GT-GGA--AAANTGGG--AGGAC-AT--ATCACCAAGACTCAANAATTGTCT-CTC-----TG------AGATCCGTGAATGGATGAGCAT-CAATTTNCTGAAGCTGAA-TCAGGAC-AAGACTGAA-C-TGA-TGGTTTTCG--CTCCGAAACATC--GCGCTAAGAAC--GTAGCT-------GA-ACTA--AGCATCTCGTTCGGAGG-CTGTGTCAT--TCA-CA-A---T-GCTCCGTACGT--A--AAAAAACC-T-----GGGTGCTTATTT-TG-ACAGAA-CCCTTTGC-ATGGAAAANC--AATGCGAC-GCAAT-AACGAGGTCGTG-CT-ACTT-GAACATTCGGG-ATATT-GG--NGTATCCGTCAGTGTATC-TCA-----GAGGTTGCATGT-AAGACG-CTCGT-CA-GNTCACT-TGTAACGTCTCGCCTTGACTACGGAAA-TGC-C-TTGCTCTAC-------GGCGT---TAA-AAACAGCGTCTTTAACA---AAGCTGCAAA-------ATGTACAGAACACCGCNGCTCGACT---NA----TCANNCGAACACNGAAATNGTATGACCATATNACNNCGGTACTGATGCAGAC---CTNCACTGGCTTCCGGTGCAGTNCNGNA-NCCAATNCAAANTTCTNNTGCACGCCTNCAAGGCCGCTAAACAGATTTGGCACCTGTATATCTCAAGGGANCTTANCNAGCCGTACNCAAACCCTGCGAGATTATTGCGCTCCGGAATCAANANCATGCTTTTNNAAGTTCCATCGGACCNGNACGAAGNCATATGGAGA
gi|1 : CACGA--TCTTGCTATATACCAC--GAGAT------ATACAAA---GACAA-GTGTCGCC-TTTATAG--TAAATTACTAA--AAACA-AAGC--AGAC-AGGGTTACTT-------CTCT----AGAAAAAG-AACTGAGTGTG-AA-GTGACTCGAAGGCATTGTATGA-TCTGACA-A-C-CG-ACTTCTTGGAAACAATCATAAGCCC-TCTCTACCCA-CCAGTGACTG-TGCCATCGC-TTTGTCC--AACAGCTTTT-CTGAT--T-TTTCACAGGGA-AGATCCAGAC-CATCAGA--GCT---A-TGCT--GCA--TGA-GGCGAACCAAACTAAGTGACTTAGAAA-CTGATTGCTTTGAG-AG-TAGA-TATTAAGTTTCAGTGG-TCA-CACCCTTGATGAGTTTAC--TGCAGCATCG---TGTG-ACGAG-GTGAAAAAA-CTG---C-TCAC--GAGCTCAACAT-CT-A-AGTCCTGTGAAC-TTGA--TT-CCTATCTC-GACTTTCCTGCTTAA-CAGTG-TGTTGACGCCTTCGTTCTG-GTAATCACAACAATAGTT-AAC-A-AATC-A-TTGT-GTGAATCT--GGGTGGTACCGATGA-ATTTCG-AACAGGCAATC-GTCA-GG-CCGC-TGTT---AAGAAGCCG---GGTT----TAGACAAAGAAGTTCTTT-AA--AAC-TATC-ACCCCG-TCTCGAATCTT-CCATTTGTGTCGAAAATTGTTG-AGAAGATTGTTGCAAA--GAGAAT-AGACCGT-------CATT-T--G-A-CTT-TAACTTTCTA-CATGAC-AACTTAC-AATCT-GC---GT-----ATCG--CTCATGTCATTCCACAGA-G--AC--A-A---A-CTT-CTCAGA-GTACA-------TCATG--ACAT--------T-GCGACTGCATTAGACAG-C--AACTGCTGT--ACTGT-CCTTG-T-AAGGTT-AGA-CCTGTCAGCTGCTTT-CGATGTCA--TTGA-TCATCA--CA---TTCT-GTTT-C---A-GC--GCC-TCG-AA-CAC-AC-----TTACGGGA---TAGCA--GGTTCTGCATT-ATCGTGGAT-CAAGTCGTA---CTT---AAG----TG-ACAGGT---CTC-AAC--G---TG-----T----AGCCA--T----TGGCTT------T------GTCT-T-A-TC---TGA-CA------A----CAGACCA---CT-TGAAA-------TAT-GTG-TGCCACAAGGC--TCT------------------GT-GCTT-GGACCAAAACT--A-TATTGTATGTTCTCAAAGCCGATCGGT-GA--AATCTGT-CG--TTTCATGA-CG-TGAAATATCACATA-AATGCAGA-T-GACACGC-A--AATCTACATT--G-TGG--T---------CGAACCA---GT-GGA--AAAATGGG--AGGAC-AT--ATCACCAAGACTCAAGAATTGTCT-CTC-----TG------GGATCCGTGAATGGATGAGCAT-CAATTTACTGAAGCTGAA-TCAGGAC-AAGACTGAA-C-TGA-TGG-ATTCG--CTCCGAAACATC--GCGCTAAAAAC--GTAGCT-------GA-ACTA--AGTATCTCGTTCGGAGA-CTGTGTCAT--TCA-CA-A---T-GCTCCGTACGTAAA--AAAAAACC-T-----GGGTTCTTATTT-TG-ACAGAA-CCCTTTGC-ATGGAAAAAC--AATGCAAC-GCAAT-AAGGAGGTCGTG-CT-ACTT-GAACATTCGGGAATATTGGG--AGTATCCGTCAGTGTATC-TCA-----GAGGTTGCATGT-AAGACG-CTCGT-CA-ACTCTCTGTGTTACATCTCGACTGGACTACAGCAA-CGC-C-TTGATTTAC-------GGCAT---TAACAAGCAGC-----TGACGGATAAGCTGCAGA-------GAGTACAGAACACAGCAGCCCGACT---TA----TTACACGAACACGGAAATCGT---ACCATATAACTACGGTACTGATGCAG-----CTACACTGGCTTCCAGTG-AGTTCAGAA-GCCAATACAAACTTTTATTGTACGTCTTCAAGG-CGCTAAACA-ATTTGGCACCTGTATATCTCAAGGGAGCTTATCAAGCCGTACACAAACCCTGCGAGATTATTGCGCT-CGGAATCAAAATCAT-TTTTTTCAAGTTCCATC-GACCCGTACAAAAACATATGGAGA
gi|10 : TAC-AATCC-GT---CT-----ATCGG-CTCAT--CACTCAAC-GA-A--AC--T-GC--A-CTC-CTC-GA-GT-CA-------TTATA--AAAT--------A-TCTAC-ACCCTA-ACAA-G--AACTTC-GTTAACTGT-ACTC--T-CATGCT-TGA-TCT-TCAGCTGCAT--CGACGTTA--TATA-TTACCA--TA---TT-T-ATTT-C---G-GA--GAC-TCG-AA-CAC-AC-----GTTTGCCA---TATCT--GACGC-GCTTT-CT----GAT-CAATTC--A---ATT---GAC----CA-ACAG-T---C-C-AA--------G-----T----AAC-A--T----AGGCTC------GA-----GCCT-T-A-TC---GGA-TG-----------CAGAA-G---CTCTGAAA-------T-C-GGG-TGATCTAAGG---TCG----------------G-AC-CCTC-GGATGA------------CGCATGTTTCCAAACCTAATCGGA-AA--CATCTGTACGAAC--CATCA-CA-TGCAATACCAC-TG-CTTGCAGA-T-GACACTC-A--AATATACATC--G-TGA--T---------AGAGCCCGCTAT-G------ACTTAG--A-GAT-GTTCGTCCCC---TCTTAATAAC--TCT-CAC-----CGGACATCAGATC-----AT-GATGTTTAC-TAATCTTCTGAAGTTGAACCCAAGAT-AAAAC-GAA-T-TAA-C--TTTTT---CTCC
gi|11 : A-CA-A---TAGCCAGGTA-GT--A--AAAAACTT-T-----GGGGGCTTTTTTATG-A---AA-ACCTAAGCGATGGGAAAAC--CATCTGGT-GCAA
gi|16 : ctgtaaatgtattaacaaagccaataggacgaaaaatttgcccgaagaaccaatactatgtcatatcacgttaacagctcgacgacacgcagggtctatttagtaataaaatcgttcagacaactgggtctaaatgtttacaaagagacttcgaagcctgctttatatacagcatatatcagcaccaattggattagtttcatgcaaatatgctagataatgaaccacgacaagacagaagcttattgtgtatcagaccatcgagaaacagcaagccgtaaaCTTT-CGATGTGA--TCGA-TCATTA--GAAGATACC-TTTTAC---ATACTAGTC-TCG-AA--AT-AGAGATGTAAAGGGAAATTAACACTGCCTCTGCTTG-ATCTTGGATACAA-TCATA---TTCTGAAAG----TG-ACAA-T---GTC-AGC------TG-----T----AGCCGTTT----TGGTTTCCGAACT------GTCT-GAA-TCCCAGGA---------A----CTTATCG---AT-CG--G-------TA----G-TTCCGCAAGGG--TCT----------------GTGTGGCTC-GG-CTCGAGTT--G-CCT----TGTTC----AGGCAACCGATAGAATAATATGT--GA-CTTCATGT-CG-TGGACTATCACTTA-GAgtggccaagtactgttataattccagtttagaggaacataggaagaatcagataacctcatcgacgatcggtacatacaaaacataatatctcactgctcttcgctcacatcaagactagactatgctaat
gi|18 : -TGTAATGTCTCGCCTTGACTACGGAAA-TGG-A-CTCCTCTA----------CAT---T-A-AAACAGCGTATTTAACA---AAGCTGCAAA-------acttgtag
gi|2 : CACGAATCCTTGCTATATACCAC--GAGAT------ATACAAA----ACAAAGTGTCGCCATTTATAG--TAA-TT-CTAA--AA-CA-AAGCCAAGACCAGGGTT---T-------CTCT----AGAAAAAG-AACTGAGTGGTGAA-GTGACTCGAAGGCATTGTATGATCCTGACAGA-C-CG--CTTCTTGGAAACAATCATAAGCCCGTCTCTACCCA-CCAGTGACTG-TGCCATCGC-TTTGTCCC-AACAGCTTTTTCTGAT--T-TTTCACAGGGA-AGATCCAGACGCATCAGA--GCT-----TGCT--G-A--TGA-GGCGAACCAAACTAAGTGACTTAGAAA-CTGAATGCTTTGAG-AG-TAGAATATTAAGTTTCAGTG--TCA-CACCCTTGATGAGTTTAC--TGCAGCATCG---TGTG-ACGAG-GTGAAAAAAACTG---C-TCAC--GAGCTCAACAT-CTTA-AGTCCTGTGAAC-TTGA--TTTCCTATCTC-GACTTTCCTGCTTAA-CAGTG-TGTTGACGCCTTCGTTCTG-GTAATCACAACAATAGTT-AAC-A-AATCCA-TTGTTGTGAATCCTGGG-TGGTACCGATGA-ATTTCGAAACAGGC-ATC-GTCA-GG-CCGC-TGTT--TAAGAAGCCG---GGTT----TAGAC-AAGAAGTTCTTT-AA--AAC-TATCAACCCCG-TCTCGAATCTT-CCATTTGTGTCGAAAATTGTTG-AGAAGATTGTTGC-AA--GAGAAT-AGACCGT-------CATT-T--G-ACCTT-TAACTTTCTA-CATGAC-AACTTAC-AATCT-GC---GT-----ATCG--CTCATGTCATTCCACAGAGA--ACAAA-A---A-CTT-CTCAGA-GTACA-------TCATG--ACAT--------T-G-GACTGCATTAGACAG-C--AACTGCTGT--ACTGT-CCTTGATAAAGGTT-AGA--CTGTCAGCTGCTTTCCGATGTCAATTTGA-TCATCAACCA---TTCT-GTTTCC---A-GC--GCCTTCGAAA-CAC-AC-----TTACGGGA---TAGCAG-GGTTCTGCATTAATCGTGGAT-CAAGTCGTA---CTT---AAG----TG-ACA-GT---CTC-AA---G---TG-----TAA--AGCCA--T----TGGCTT------T------GTCT-T-A-TC---TGA-CA------A----CAGACCAG--CT-TGAAA-------TAT-GTG-TGCCAC-AGGC--TCT------------------GT-GCTTGGGACCAAAACT--A-TATTGTATG-TCTCAAAGCCGATCGGT-GA--AATCTGT-CGC-TTTCATGACCG-TGAAATATCACATA-AATGCAGA-T-GACACGCAA--AATCTACATT--GTTGGGTT---------CGAACA----GT-GGA--AAAATGGG--AGGACAAT--ATCACCAAGACTCAAGAATTGTCTCCTC-----TG------GGATCCGTGAATGGATGAGCATCCAATTTACTGAAGCTGAA-TCAGG-C-AAGACTGAA-C-TGA-TGA-TTTCG---TCCGAAACATC--GCG-TAA-AAC--GTAGCT-------GA-ACTA--AGTATCTCGTTCGGAGGACTGTGTCAT--TCAGCA-A---T-GCTCCGTACGTAAA--AAAAAACC-T-----GGGTTCTTATTT-TGAACAGAACCCCTTTGC-ATGGAAAAACCAAATGCAAC-GCAATAAAGGAGGTCGTGTCT-ACTT-GAACATTC-GA-ATATT-GGGAAGTATCCGTCAGTGTATCTTCA-----GAGGTTGCATGT-AAGACGCCTCGT-CA-
gi|20 : TGCCGATGA-ATTTCA-AACAGGCCATC-GTCA-GG-CCGC-TGTT--GAAGAAGCCG---GGTT----a
gi|21 : AT-CAATTTCCTGAAGCTGAA-TCAGGAC-AAG
gi|3 : CACGAGT-CTTGCTATATACCAC--GAGATGAGAATATACAAA---G-CAATGTGTCGCC-TTTATAGAGTAAATTACTAA-----CACAAGC--AGAC-AGA-TTACTTTTCTCTCCTCT----AGAAAATT-A-CTGAGTGTG--A-GTGACTCAAAGGCATT-TATGGGCCTGA-A-A-C-CGGACTTCTTGGAAACA-TCA--AGACT-TCTCTCTCCAGCCAGCGCCTG-TGACA--GC-TTTGTCCGAAACAGATTTT-CTGAAAAT-TTTCACAGGGCCAGATCCAGAC-CATCAG---GCT---A-TGCTT-GCAATTGA-GGCGAACCAATCTAAGTGACTTAGAAA-CTGAT-GCT--GAG-AGGCCGA-TATTAA--TTC-GTGGATCA-CACC-TTG-TGAGTTTAC--TGCAGCATCG---TGTGGACGAG-GTGAAAAAA-CTG---CCTCACTTGAGCTCACCA--CT-A--GTCCTGTGAAC-TTGA--T--CCTATCCC-GACTTTTCTGCTTAAACAGTG-T-TTGACGC-TTCGTTCCGAGTAATCACAACGATAGTT-AAC-AGAATC-A-TTGT-GCGAATCT--GT-TG-TGCCGATGA----TTG-AA-AAGCCATC-GTCA-GG-GCGC-TGTT--GAAGAAGCCG---GGTT----TGGACAAAGAAGTC--TT-AA--AAC-TATC-GCGCGG-TTTCGAATCTT-CCATTTGTGTCGAAA-TTGTTG-AGA-GATTGTT-CAAA--GAGAAT-AGACCATTCACACACATT-TTGG-A-CTT-CAACTT-CT--CATGTC-AA-TTGC-AATCT-GC---GT-----ATCGGCTTCA-GTCATCCTACAGA-AGTAC--A-G---A-CTT-CTCAGA-GTACA-------TCATG--ACAT--------T-GCG-CTGCATTAGACAA-TCTAACTGCTGT--GCTGT-CCT-G-T-AATGTTTAGATCCTGTCAGCTGCTTT-CGATGTCA--TTGA-TCATCA--CA---TTCT-GTTT-C---G-GC--GCC-TCG-AA--ACAAC-----TTACGGGA---TAGCA--G--TTTGCATT--TCGTGGAT-C-AGT-GTA---CTT---AAG----TG--CATAT---CCC-AAT--GGT-TG-----T----AGCCA--T----TGGC-T------T------G--T-T-ATTC---GGC-CG------------AGA-CA---CT-TGAAA-------TACGGTG-TGCCACAAGGC--TCTTGAGGGGGGGGGGGGGG-GT-GCTT-AGACC-AAACTAAA-TATCGTATGTTCTCAAAG-CGATCGGT-GAT-AATCTGT-CGA-CTTC-TGA-AA-TGCAATATCACATA-TATGGCGA-TAGACACGG-C--AATCTAC-TT--G-TGG--T---------CGAA-C----AT-GGA--AAATTGGG--AGGAC-AT--ATCACCAAGACTCAATAATTGTCT-CTC-----TG------AGATCCGTG--TGGATGAGCAT-CAATTTCCTGAAGCTGAA-TCAGGAC-AAGACTGAATC-TGA-TGGTTTTCG--CTCCGAAACATC--GC-CTAAGGAC--GTAGCT--------A-ACT---AGCATCTCGTTCGGAGG-CTGTGTCTTCATCA-CG-A---T-GCTCCGTACGT-----AAAAAACC-T-----GGGTGCTT-TTT-TG-ACAGAA-CC--TTGC-ATGGAAAACC--AATGC-AC-GC-AT-AACG-GGTCGTG-CT-ACTTGGAACATTCGGG-ATATT-GG--CGTATCCGT-AGTGTATC-TCT-----GAGGTGGCCAGT-AAGACG-CTCGT-CA-
gi|4 : gCACGAGTTCTT-CTATATACCAC--GAGAT------ATACAAA---GACAATGTGTCGCC-TTTATAGAGTAAATTACTTA--ACACA-A-GC--AGAC-AGGATTACTT-------TTCTTTCTAGAAAAAT-TACTGAGTGTGGAA-GTGACTCAAAGGCATTGTATGG-CCTGAAA-A-C-CG-ACTTCTTGGAAACAATCA--AGACC-TCTCT-CCTAGCCAGCGACTG-TGACATAGC-TTTGTCC--AACAGATTTT-CTGAAA-T-TTTCACAGGGA-AGATCCAGAC-CATCAGG--GCT---AATGCTT-GCA--TGA-GGCGAACCAA-CTAAGTGACTTAGAAAACTGAT-GCTTTGAG-AG-CAGA-TATTAAGTT-CAGTGG-TCA-CACC-TTGATGAGTTTAC--TGCAGCATCG---TGTG-ACGAG-GTGAAAAAA-CTG---C-TCACT-GAGCTCACCA--CT-A-AGTCCTGTGAACCTTGA--T--CCTATCCC-GACTTTTCTGCTTAAACAGTG-T-TTGACGC-TTCGTTCCGAGTAATCACAACGATAGTT-AAC-A-AATC-A-TTGT-GCGAATCT--GT-TG-TGCCGATGA-ATT--A-AACAGGCCATC-GTCA-GGGCCGC-TGTT--GAAGAAGCCG---GGTT----TGGACAAAGAAGTC--TT-AA--AAC-TATC-GCGCAG-TTTCGAATCTT-CCATTTGTGTCGAAA-TTGTTG-AGAGAGTTGTT-CAAA--GAGAAT-AGACCAT-------CATT-T--GGA-CTT-CAACTTTCTA-CATG-C-AA-TTGC-AATCT-GC---GT-----ATCG--CTCATGTCATCCTACAGA-AGTAC--A-G---A-CTT-CTCAGA-GTACA-------TCATG--ACAT--------TTGCGACTGCATTAGACAATC--AACTGCTGT--GCTGT-CCTTG-T-AATGTTTAGA-CCTGTCAGCTGCTTT-CGATGTCA--TTGA-TCATCA--CA---TTCT-GTTT-C---G-GC--GCC-TCG-AAACA--AC-----TTACGGGA---TAGCA--GGTT-TGCATT--TCGTGGAT-CAAGTCGTA---CTT---AAG----TG-ACATAT---CTC-AAT--G---TG-----T----AGCCA--T----TGGCTT-------------GTTT-T----C---GGC-CG------A------GAC-A---CT-TGAAA-------TAG-GTG-TGCCACAAGGC--TCTT---------------G-GT-GCTT-AGACCAAAACT--AATAT-GTATGTTCTCAAAGCCGATCGGT-GAT-AATCTGT-CGA-CTTCATGA-AA-TG-AATATCACATA-TATGCAGA-T-GACACGC-A--AATCTACATT--G-TGG--T---------CGAAC-----AT-GGA--AAATTGGG--AGGAC-AT--ATCACCAAGACTCAATAATTGTCT-CTC-----TG------AGATCCGTGAATGGATGAGCAT-CAATTTCCTGAAGCTGAA-TCAGGAC-AAGAC-GAA-C-TGA-TGGTTTTCG--CTCCGAAACATC--GCGCTAAGGAC--GTAGCT-------GA-ACTA--AGCATCTCGTTCGGAGG-CTGTGTCAT--TCA-CAGA---T-GCTCCGTACGT-----AAAAAACC-T-----GGGTGCTTATTT-TG-ACAGAA--CCTTTGC-ATGGAAAACC--AATGC-AC-GC-AT-AACGAGGTCGTG-CTAACTT-GAACATTCGGA---ATT-GG--CGTATCCGT-AGTGTATC-TCT-----GAGGTTGCAGGTAAAGACG-CTCGT-CA-a
gi|5 : gCACGAGT-CTTGCTATATACCACACGAGAT------ATACAAAAAGGACAA-GTGTCGCC-TTTATAGA---AATTAC-AATCAAA-A-AAAC--AGAC-AGA-TTACTT-------CTCT----AGAAAAAATAACTGAGTGTGGAAAGTGACTCGAAGGCATGATATGG-CCTGACA-A-AACG-ACTTCTTGGAAACAGTCAAGAGCCC-TCTCTAACC--CCAGTGACTGTTGACATCGCATTTGTCC--CATAA--------GATA-TGTTTCACCAGGA-AGATCCAGAC-CATCAGAGGGCTATAA-TGCTGAGCA--TGAGGGCGAACCAA--TACGTGACTCAGAAA--TGA-TGCTTTGAGAAG-CAGA-TATTAA-TTACAGTGG-TCAGCACCCTTGATGAGTTTACTTTGCAGCATCGAGATGTG-ACGAG-GTGAAAAAA-ACGAGAC-TCAC--G-GCTCATCATACT-ATAGTCCTGTGACA-TTGAATTC-CCTATCCCGGACTTTCCTGCTTAGACAGTGATGTTG------TTGTT---GGTAATCACAACGATAGTTAAACAA-AATC-ATTTGT-GCGAATCTA-AA-TGGTACCGATGAGATTTCA-AACA-GCAATCAGTCAGGG-CCGCTTGTTGAGAAGAAGCCGAGAGGTTTGTGTGGAC-AAGAAGTTCTTT-AATTTACGTATC-GCCACGTTTTCGAATCTTACCA-TTGT-TCGAAAATTGTTGAAGAAGATTGTTGCAAAAGGAGAAT-A-----TTTA----CATTATG-G-A-CTTGCAACTTTCTACCATGACAAACTTGCAAATCT-GCTTTGTTCTNNNNNN--NNNNNNNNNNNNNNNNNN-N--GC--ATGTC-A-TTT-TACAGA-G-ACAGCACTTCTCATAGTACATCATGACATT-GCGACTGCATTAGACAA-C--AACTGCTGT--GCTGT-CCTTG-T-AATGTT-AGA-CCTGTCAGCTGCTTT-CGATGTCA--TTGA-TCATGA--CA---TTCT-GTTT-C---G-GC--GCC-TCG-AA-CTC-AC-----TTACGGGA---TAGCA--GGTTCTGCATT-ATCGa
gi|6 : aatagtaggacatattgataaaacacatgagggacaacagataactatcttgcaggcaagtccccggtgtcagatagtcagtacttgtgtgactataaggagtatgtcctcctcaggatcataaatgggaatttacactttactgccaaatttctacgatttcgacgcaacacaaaacgggtttccttcaggaattacgcaatatcataacttaacgaatttaataaagatacattgaaaaacgtcaactgcagctgtatcagcagtaaatacaggttgacatctcgtcaaaattctaaataagaatgcgcgcagaggtctttggacaagcattgcttttttacaatcaaaagagatcgtcctgcggaccgaactctccatgggtactcggatgaattgcgagaaagccaaacgcgacatgacgaaaaaccggaagcgtgagtggacaCACGA--TCTTGCTATATACCAC--GAG-T------ATACAAA---GACAA-GTGTCGCC-TTTATAG--TAAATTACTAA--AA-CA-AAGC--AGAC-AGGGTTACT--------CTCT----AGAAAAAG-AACTGAGTGTG-AA-GTGACTCGAAGGCAA-GTATGA-TCTGACA-AAC-CA-GCTTCTTGGAAACAATCATGAGCCC-TCTCTACCCA-CCAGTGACTG-TGCCATCGC-TTTGTCC--AACAGCTTTT-CTGAAT-T-TTTCACAGGGA-AGATCCAGAC-CATCAGA---CT---A-TGCT--GCA--TGA-GGCGAACCAAACTAAGTGACTTAGAAA-CTGATTGCTTTGAG-AG-TAGA-TATTAAGTTTCAGTGG-TCA-CACCCTTGATGGATTTAC--TGCAGCATCG---TGTG-ACGAGTGTG-AAAAA-CTG---C-TCAC--GAGCTCAACAT-CT-A-AGTCCTGTGAAC-TTGA--TT-CCTATCCT-GACTTTCCTGCTTAAACAGTGTTGTTGACGCC-TCGTTCTG-GT-ATCACAACAATAGTT-AAC-A-AATC-A-TTGT-GTGAATCT--G--TGGTACCGATGA-ATTTCG-AACAGGCAATC-GTCA-GG-CCGC-TGTT--TAAGAAGCCG---GGTT----TAGACAAAGAAGTTCTTTAAA--AAC-TAT--ACCCCG-TCTCGAATCTT-CC-TT--TGTCGAAAATTGTTG-AGAAG-TTGTTGCAA----AGAATAAGACCGT-------CATT-T--G-A-CTT-TAACTTTCTA-CATGAC-AACTTAC-AATCT-GC---GT-----ATCG--CTCATGTCATTCCACAGA-G--AC--A-AAACA-CTT-CTCAGA-GTACA-------TCATG--ACAT--------T-GCGACTGCATTAGACAG-C--AACTGCTGT--ACTGT-CCTTG-T-AAGGTT-AGA-CCTGTCAGCTGCTTT-CGATGTCA--TTGT-TCATTA--CA---TTCT-GTTT-C---A-GC--GCC-TCG-AA-CAC-AC-----TTACGGGA---TAGCA--GGTTCTGCATT-ATCGTGGAT-CAAGTCGTA---CTT---AAGGAGCTGCACAGGTATCCTCAAAC--GCTCTGACCGATGATAAGCCA--TGGACTAGCTT------T------GTCTCT-ACTCT--AGACCGAGATATA----CAGACTC---CT-TAAAATAAAGACTAT-GTGTTGCCACAAAGCTGTCTA---------------G-GT-GCT
gi|7 : ggcgACGTGC-AATCTTGC---AT-----ATCG--CGCTTGTCACTCTACCGA-A--AC--T-G---CTCTTACTTACATGTTCA-------TCACG--ACAT--------T-GTGTCTGCATTAGACGG-A--AATTCTTGT--A-TGTCCCTTG-T-GATGCT-CGA-CCTTTCTGCCGCCTT-TGATGTGA--TAGATTCACAA--CA---TTCTCATCT-CATTG-G--------CG-A--------------TATGGAA---TATCT--GGATCAGCATT-GGCATGGTT-TAGATCATATCTCCT----GG----TC-GCAG------TC-AGCAGG---TT-----T-----GCAA--T----TGGTTT------TAAAACAGTTT-----TC---AG--CG------ATGTTCAGGCTATGTTT-TG--------------GCG-TTTCCCAGGGC--TCT----------------GTGT-G----GGACCACGTCT--T-TACTGCATGTTTTCTAAACC-ATTGGT-GA--AATATGC-CGA-CGTCATTA-CATTGTGCTATCAC-TGTTATGCCGACT-GACACGC-AGGAA--TATATG--G-TTA--TAAAACCTAACGAACC----CT-GAACCAGAATTGC--A-GAC------------AGACTTCAAAAGTGCCT-CTCAAATATA------AGCCCC-----TGGATGAA-GT-CAA-ATACTAAAACTAAA-TCAGGACAAAAACTGAA-CTTGATTCATTTTTG--CTCCCAAAAA----G----AAGATCTTGTGACTTCTTTTAGA-TTTGTCAAC-TCACATTTGGAGG-ATCGATCAT--T-A-CA-AG--T-GTGTCGTGCGT--T--AAAAAACCTT-----TGGTGTTTTCTT-TG-ATAAGA-TCTAT--C-ATGGAacattgatccaaaaaata
gi|7 : TCAT-CA-GATCACT-TGTAATGTCTCGCCTTGACTACGGAAAATGC-CACTCCTCTACTCTGTTAACCGT---TAA-AAACAGCGTCTTTAACA---AAGCTGCAAA-------ATGTAC-GAACA-CGCTGCTCGACtttcccaataaaacatctagtcaaactgtgctactcccaacttaaaaacatcgatagaattagtaactgtccaacaatcatcagatcacttgtaatgtctcgccttgactacggaaaatgccactcctctactctgttaaccgttaaaaacagcgtctttaacaaagctgcaaaatgtacgaacacgctgctcgac
gi|8 : acgtgcaatcttgcatatcgcgcttgtcactctaccgaaactgctcttacttacatgttcatcacgacattgtgtctgcattagacggaaattcttgtatgtcccttgtgatgctcgacctttctgccgcctttgatgtgatagattcacaacattctcatctcattggcgatatggaatatctggatcagcattggcatggtttagatcatatctcctggtcgcagtcagcaggtttgcaattggttttaaaacagttttcagcgatgttcaggctatgttttggcgtttcccagggctctgtgtgggaccacgtctttactgcatgttttctaaaccattggtgaaatatgccgacgtcattacattgtgctatcactgttatgccgactgacacgcaggaatatatggttataaaacctaacgaaccctgaaccagaattgcagacagacttcaaaagtgcctctcaaatataagcccctggatgaagtcaaatactaaaactaaatcaggacaaaaactgaacttgattcatttttgctcccaaaaagaagatcttgtgacttcttttagatttgtcaactcacatttggaggatcgatcattacaagtgtgtcgtgcgttaaaaaacctttggtgttttctttgataagatctatcatggatttcccaataaaacatctagtcaaactgtgctactcccaacttaaaaacatcgatagaattagtaactgtccaacaaGCTGA-C-GACACGC-A--GGTC--CATTTAG-TGA--T---------AAAACC----GTTAGA--CAACTGGACTAAGTT--T--AT-AGAAAGACTCGAAGCCTGTTT-AGC-------------AGAT----------ATCAGCA---AATATGCTGAAATTGAA-CCATGAC-AAGGCAGAG-T-TGA-TAGTTTTCGGACCTCGAAACAGCAAGCGTTA----C--CTAGCT-------AATACCA---GCATTACTTTCGATGG-ATTTGTCAT--T----A-AGTCT-GTTCCG---GT--ATTCAAAAACT-TAGGGGGGGGGGGTATTT-TG-ACGAAA-ATCTTAGC-ATGAGATACC--A-TTTGTCTGCAAT-GGCTAAGTTTTG-TT-ATTT-------CCAG-----TT-G---AGTAAC-------ATACC-TCATCGACGATGATACATGC-AAAACA-TTAATACATGCTC--T-CGTCACATCAAGGCTAGACTATGCTGA-TGC-A-TTGTTATAT-------GGCCTATCTAA----CAGTGC---TAACA---A-----CAAATTAGTACGTGTACAAAATACCACAGCAAGGAT---GA----TCAGTCG--CACTAAAA-AGTATGATCATATTACACCGGTATTGA--CAGAC---CTTCATTGGCTTCCGGTACAGTATTGTA-TTCAATTCAAAGTTCTTGTGCATGCCTACAAGGCCGTT---CAGATTTGG-ACCTA-----CTC-----ACCTTAGCTAACTG-ACTC-AACC--------TTATT---CTCCAGAA--AACAGTATGCTTTTGAAAGTTCC-TCGGACTAGAACGAAGTCATATGGAAA
gi|9 : CGTGT-CGAACA-ATCTT-CA-GGTCACT-TGTAATGTCTCGCCTTGACTACGGAAA-TGCAC-TTCCTCTAC-------TCTGT---T-A-AAACAGCGTCTTTAACA---AAGC-ACAAAC------ATGTACAGAACACTGCTGCTCGACTATGTACCGCTCCTTCAAACAC-GA-----------CATATCACCCCATT-TTAAT-----CTCTCTACAATGGCTACTGTTAC--TTCCGAATTTCAGTACAAAATCCTAGTcagacgcttgactattttgcgccaataatgtggatcgcctaaccatcaggattatattgtgccaaatcactggat
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ATAGCGGGACATATGTCCCGGGACATAAGTCCCGGACTACAATACACCCACCCCTATGTTGCAGGCAGTCCCGCGTGTCCGATAGTCCAGTACTTGTGGTGACCTCAAGGGTATGTCCTCGTTGCTCAGTCATATGGGAATTTACACTTTAACTGCAAATATCTACGATTTCGACGCAACACAACGGTTTCCTTCAGAAATTCAACGCAATGTCTCTTAACGAATTTCAATAAAGATATTGACGTCAAACTTGCGATGTATCGCAGTGATATACAGTTGGACATTTTTGTTGAAATTATATAGATAGAATGCGCGCGAGGTCCCTTGAAACAAGCATGCTGCTTTAGCAGTCAAAAGAGATCGTCCTGCGGCCGAACTTCTCCGTGGTTACTCGATGCTTTGGCGACAGACGGAAATCCGAGCGTGAGTGGAGGCCG
Unaligned ( gi|13 ): CAATCGCGGGACATATGTCCGGGACATAAGTCCCGGACTACAAATACACCCACCCCATGTTGCAGGCAGTCCCGCGTGTCCGATAGTCAGTACTTGTGTGAATCTCAGGTAGTTGTCCTCCTCAGATCATATGGGAATTTCAACTTTACTGCAAATATCTACGATTTCGACGCAACACAAAACGGTTTCCTTCAGGAAATTACGCAATGTCTAACTTAACGATTTCATAAAGATATTGAAACGTCAACTGCGATGTATCCGCAGTGAATACAGTTGGACATTTTGTTGAATATAATAAGAATGCGCGCGAGGTCTTGAACAAGCATGCTGCTTTACAGTCAAAAGAGATCGTCCTGCGCGGCCATCTCCGTGGTTACTCGACTGAATTGCGACAGACGGAAATCCGAGCGTGAGTGG
Unaligned ( gi|14 ): TATGTTGCAGGCAGTCCCGCGTGTCGATAGTCAGTACTTGTGGTGACTCTCAGGGTATGTCCTCCTCAGATCATATGGGAATTTACACTTTACTGCAAATATCTACGATTTCGACGCAACAACAAACGGTTTCCTTCAGGAAATTACGCAATGTCTAACTTAACGAATTTCAATAAAGATATTGAAACGTCAACTGCAGATGTATCCGCAGTGAATACAGTTGGACATTTTGTTGAATTATATAATAAGAATGCGCGCGAGGTCTTGAAACAAGCATGCTGCTTTACAGTCAAAAGAGATCGTCCTGCGGCCGAACTCTCCGTGGTTACTCGACTGATTGGCGACAGACGGAAATCCGAGCGTGAGTGGAGCCG
Unaligned ( gi|15 ): TCTTGCGAACTAGAAGTCCAATTCCAAACAAATCTGCTTAAGCAATGTTTGAACTCTGTGCTTCCTATTGATACGAAATCATAAACAGATCATTTTCAAAACTCAACAGGACGCACCCTCGTTGTAAGAATGCTAATGTTCGACCACTTATCAAGCGACCAATGGCTAGACAAAGACGAATGTAAGAAATTATGCGTCCGGTATCCGAATTACCGTTCTGAGGCTAAAAGTCCTTGAAAAGCCGGTAGCATCGCGATTGGACAAACACACCGCGATTATAAATGATCTGCAACG
Unaligned ( gi|17 ): TGGGGGCTTATTTTGGATGAAACTAAGCATGGAAAACATCTGTCTGCACTCTGAGTGGCCAAGTCTTGTTATTTTCCAGTTGAGGAACATAGGAAGAATCAGATACTGCCACCTATGAACTCGTTTTAACAAAACTTGAT
Unaligned ( gi|19 ): CCACGTGCAACTGCATATCACGCTTGTCACTCTACCAAACTGCTATACTACGTGTTCATCACGAGA
Alignments
lowQualScore : 111 111111 111 2 22 11111 2222222 1111 1 1 11 1 11 111 111 11111 22 1 11 111 111 11 11 11111 1 11 1 22222 111 111 1111 3333333 11 11111 11 1111 22222222 1111111 11111111 1111 1 11111 11 11 1111 222222 3333333333333333333 1111 555555555555555555555555555555555555555555555555555555 22222222222 555555555555555555 11111111 11 222222222 111111 11111 2222222222222 111111 22222222 111 111 33333 11111 11 1 2222 111 1 222222 111 333333333333333333 111 111 3333333 444444444 555555555555 3333333 11 1 1 222 1 1 22222 22222 1 1 33333333 222 1 11 1 1 1
lowQualScore : 888 99 999999 111 0 6 88 88888 6 99 6 9 1111111 4444 77 5 6 44 3 2 6 777 88 1 55 6 3 3 0 6 1 6 55 6 6 999 6 6 6 000 77777 22 99 6 1 6 00 6 6 6 6 3 6 6 6 99 111 6 6 6 111 6 55 1 44 6 6 6 66666 6 7 3 6 44 2 8 6 6 6 6 6 6 22222 6 5 5 6 5 5 5 5 222 000 2222 7 6 6 99 6 6 6 6 7 6 1 1 6 99 6 3333333 6 55 6 6 6 6 3 6 4 5 5 888 22222 11 0 1 4444 66666666 5 5 5 0 6666666 66 88888888 5 0 0000 66 5 5 5 0 5 4 66 4 66 777 4 8 99999 66 4 4 99999 11111 777 00 0 00 5 1 0 888 888 0000 5 000000 5 6666666666666666666 66 0000 333333333333333333333333333333333333333333333333333333 5 3 33333333333 5 66 555555555555555555 5 88 55 0 66666666 0 0 1 5 99 5 77 1 7777 6 8 66 1 5 5 8888 77 5 77 222222222 999999 5 77 1 77 6 55555 0 1 1 5 6666666666666 666666 0 5 1 5 5 8 666 5 666 77 3 99 77 5 99 22222222 6 000 6 99 666 5 555 5 0 22222 5 44444 5 5 5 22 5 5 1 99 2 6 7 8 0 8 8 8 3 0000 8 111 5 8 111111 6 6 5 5 1 9 8 1 1 1 8 666 777777777777777777 88 111 444 0 5 4444444 3 22 1 1 111111111 1 333333333333 1 1 7 4444444 1 44 3 3 1 1 5 111 5 5 77777 66666 1 1 1 5 1 5 44444444 000 5 88 1 1 5 22 5 5 1 1 1
lowQualScore : ... .. ...... ... . . .. ..... . .. . . ....... .... .. . . .. . . . ... .. . .. . . . . . . . .. . . ... . . . ... ..... .. .. . . . .. . . . . . . . . .. ... . . . ... . .. . .. . . . ..... . . . . .. . . . . . . . . ..... . . . . . . . . ... ... .... . . . .. . . . . . . . . . .. . ....... . .. . . . . . . . . . ... ..... .. . . .... ........ . . . . ....... .. ........ . . .... .. . . . . . . .. . .. ... . . ..... .. . . ..... ..... ... .. . .. . . . ... ... .... . ...... . ................... .. .... ...................................................... . . ........... . .. .................. . .. .. . ........ . . . . .. . .. . .... . . .. . . . .... .. . .. ......... ...... . .. . .. . ..... . . . . ............. ...... . . . . . . ... . ... .. . .. .. . .. ........ . ... . .. ... . ... . . ..... . ..... . . . .. . . . .. . . . . . . . . . .... . ... . . ...... . . . . . . . . . . . ... .................. .. ... ... . . ....... . .. . . ......... . ............ . . . ....... . .. . . . . . ... . . ..... ..... . . . . . . ........ ... . .. . . . .. . . . . .
lowQualScore : 222 22 222222 777 0 7 88 77777 7 22 7 3 7777777 2222 77 0 7 22 3 5 7 555 33 7 33 7 2 3 7 7 0 7 88 7 7 333 7 7 7 888 55555 55 22 7 7 7 88 7 7 7 7 5 7 7 7 22 777 7 7 7 777 7 88 0 00 7 7 7 77777 7 3 3 7 00 2 0 7 7 7 7 7 7 77777 7 7 7 6 7 7 7 7 111 000 1111 3 7 7 22 7 7 7 7 3 7 7 7 7 22 7 3333333 7 88 7 7 7 7 5 7 3 0 0 888 55555 99 5 4 8888 00000000 0 0 0 4 2222222 99 11111111 0 4 1111 99 0 0 0 0 0 4 11 4 11 888 4 9 33333 11 4 4 44444 11111 888 66 1 77 0 4 2 888 888 6666 0 000000 0 5555555555555555555 99 6666 000000000000000000000000000000000000000000000000000000 0 2 99999999999 0 99 666666666666666666 0 44 00 3 00000000 1 7 7 7 33 7 11 4 7777 6 7 77 6 7 7 0000 99 7 99 999999999 000000 7 99 0 99 6 11111 7 4 0 7 7777777777777 666666 7 0 0 0 0 7 000 7 111 99 2 22 77 2 22 77777777 7 888 7 22 888 7 777 7 7 33333 7 33333 4 7 7 33 4 7 0 22 0 7 3 0 8 0 0 0 2 6666 0 666 0 0 444444 7 7 7 7 0 8 0 0 0 0 0 000 444444444444444444 88 222 000 8 6 0000000 2 88 0 2 777777777 0 000000000000 0 0 3 0000000 0 00 7 3 0 0 0 555 0 0 55555 00000 0 0 0 5 0 5 00000000 000 0 00 0 0 0 00 5 0 0 0 0
consensus : CACGAGTTCTTGCTATATACCAC--GAGAT------ATACAAA---GACAA-GTGTCGCC-TTTATAGA-TAAATTACTAA--AAACA-AAGC--AGAC-AGGGTTACTT-------CTCT----AGAAAAAG-AACTGAGTGTGGAA-GTGACTCGAAGGCATTGTATGG-CCTGACA-A-C-CG-ACTTCTTGGAAACAATCATGAGCCC-TCTCTACCCA-CCAGCGACTG-TGNCATCGC-TTTGTCC--AACAGCTTTT-CTGANA-T-TTTCACAGGGA-AGATCCAGAC-CATCAGA--GCT---A-TGCT--GCA--TGA-GGCGAACCAAACTAAGTGACTTAGAAA-CTGATTGCTTTGAG-AG-CAGA-TATTAAGTTTCAGTGG-TCA-CACCCTTGATGAGTTTAC--TGCAGCATCG---TGTG-ACGAG-GTGAAAAAA-CTG---C-TCAC--GAGCTCANCAT-CT-A-AGTCCTGTGAAC-TTGA--TT-CCTATCCC-GACTTTCCTGCTTAAACAGTG-TGTTGACGCCTTCGTTCCGAGTAATCACAACGATAGTT-AAC-A-AATC-A-TTGT-GCGAATCT--GN-TGGTGCCGATGA-ATTTCG-AACAGGCNATC-GTCA-GG-CCGC-TGTT--GAAGAAGCCG---GGTT----TGGACAAAGAAGTTCTTT-AA--AAC-TATC-GCCCCG-TCTCGAATCTT-CCATTTGTGTCGAAAATTGTTG-AGAAGATTGTTGCAAA--GAGAAT-AGACCGT-------CATT-T--G-A-CTT-CAACTTTCTA-CATGAC-AACTTGC-AATCT-GC---GT-----ATCG--CTCATGTCATTCCACAGA-A--AC--A-G---A-CTT-CTCAGA-GTACA-------TCATG--ACAT--------T-GCGACTGCATTAGACAG-C--AACTGCTGT--ACTGT-CCTTG-T-AATGTT-AGA-CCTGTCAGCTGCTTT-CGATGTCA--TTGA-TCATCA--CA---TTCT-GTTT-C---G-GC--GCC-TCG-AA-CAC-AC-----TTACGGGA---TAGCA--GGTTCTGCATT-ATCGTGGAT-CAAGTCGTA---CTT---AAG----TG-ACAGGT---CTC-AAC--G---TG-----T----AGCCA--T----TGGCTT------T------GTCT-T-A-TC---GGA-CG------A----CAGACCA---CT-TGAAA-------TAC-GTG-TGCCACAAGGC--TCT----------------G-GT-GCTC-GGACCAAAACT--A-TATCGTATGTTCTCAAAGCCGATCGGT-GA--AATCTGT-CGA-CTTCATGA-CG-TGNAATATCACATA-NATGCAGA-T-GACACGC-A--AATCTACATT--G-TGG--T---------CGAACC----GT-GGA--AAANTGGG--AGGAC-AT--ATCACCAAGACTCAANAATTGTCT-CTC-----TG------AGATCCGTGAATGGATGAGCAT-CAATTTNCTGAAGCTGAA-TCAGGAC-AAGACTGAA-C-TGA-TGGTTTTCG--CTCCGAAACATC--GCGCTAAGAAC--GTAGCT-------GA-ACTA--AGCATCTCGTTCGGAGG-CTGTGTCAT--TCA-CA-A---T-GCTCCGTACGT--A--AAAAAACC-T-----GGGTGCTTATTT-TG-ACAGAA-CCCTTTGC-ATGGAAAANC--AATGCGAC-GCAAT-AACGAGGTCGTG-CT-ACTT-GAACATTCGGG-ATATT-GG--AGTATCCGTCAGTGTATC-TCA-----GAGGTTGCATGT-AAGACG-CTCGT-CA-GNTCACT-TGTAACGTCTCGCCTTGACTACGGAAA-TGC-C-TTCCTCTAC-------GNCGT---TAA-AAACAGCGTCTTTAACA---AAGCTGCAAA-------GTGTACAGAACACCGCNGCTCGACT---TA----TCANTCGAACACGAAA---GTAC---CATATNACNCCGGTATTGAT-CAG-CCTACANTGGCTTCCGGTACAGTTCCGAA-TTCAATACAAANTTCTAGTGCACGCCTNCAAGGCCGCTAAACAGATTTGGCACCTGTATATCTCAAGGGANCTTANCNAGCCGTACNCAAACCCTGCGAGATTATTGCGCTCCGGAATCAANANCATGCTTTTNNAAGTTCCATCGGACCNGNACGAAGNCATATGGAGA
Reference ( family-1163 ) : CACGAGTTCTTGCTATATACCAC--GAGAT------ATACAAA---GACAA-GTGTCGCC-TTTATAGA-TAAATTACTAA--AAACA-AAGC--AGAC-AGGGTTACTT-------CTCT----AGAAAAAG-AACTGAGTGTGGAA-GTGACTCGAAGGCATTGTATGG-CCTGACA-A-C-CG-ACTTCTTGGAAACAATCATGAGCCC-TCTCTACCCA-CCAGCGACTG-TGNCATCGC-TTTGTCC--AACAGCTTTT-CTGANA-T-TTTCACAGGGA-AGATCCAGAC-CATCAGA--GCT---A-TGCT--GCA--TGA-GGCGAACCAAACTAAGTGACTTAGAAA-CTGATTGCTTTGAG-AG-CAGA-TATTAAGTTTCAGTGG-TCA-CACCCTTGATGAGTTTAC--TGCAGCATCG---TGTG-ACGAG-GTGAAAAAA-CTG---C-TCAC--GAGCTCANCAT-CT-A-AGTCCTGTGAAC-TTGA--TT-CCTATCCC-GACTTTCCTGCTTAAACAGTG-TGTTGACGCCTTCGTTCCGAGTAATCACAACGATAGTT-AAC-A-AATC-A-TTGT-GCGAATCT--GN-TGGTGCCGATGA-ATTTCG-AACAGGCNATC-GTCA-GG-CCGC-TGTT--GAAGAAGCCG---GGTT----TGGACAAAGAAGTTCTTT-AA--AAC-TATC-GCCCCG-TCTCGAATCTT-CCATTTGTGTCGAAAATTGTTG-AGAAGATTGTTGCAAA--GAGAAT-AGACCGT-------CATT-T--G-A-CTT-CAACTTTCTA-CATGAC-AACTTGC-AATCT-GC---GT-----ATCG--CTCATGTCATTCCACAGA-A--AC--A-G---A-CTT-CTCAGA-GTACA-------TCATG--ACAT--------T-GCGACTGCATTAGACAG-C--AACTGCTGT--ACTGT-CCTTG-T-AATGTT-AGA-CCTGTCAGCTGCTTT-CGATGTCA--TTGA-TCATCA--CA---TTCT-GTTT-C---G-GC--GCC-TCG-AA-CAC-AC-----TTACGGGA---TAGCA--GGTTCTGCATT-ATCGTGGAT-CAAGTCGTA---CTT---AAG----TG-ACAGGT---CTC-AAC--G---TG-----T----AGCCA--T----TGGCTT------T------GTCT-T-A-TC---GGA-CG------A----CAGACCA---CT-TGAAA-------TAC-GTG-TGCCACAAGGC--TCT----------------G-GT-GCTC-GGACCAAAACT--A-TATCGTATGTTCTCAAAGCCGATCGGT-GA--AATCTGT-CGA-CTTCATGA-CG-TGNAATATCACATA-NATGCAGA-T-GACACGC-A--AATCTACATT--G-TGG--T---------CGAACC----GT-GGA--AAANTGGG--AGGAC-AT--ATCACCAAGACTCAANAATTGTCT-CTC-----TG------AGATCCGTGAATGGATGAGCAT-CAATTTNCTGAAGCTGAA-TCAGGAC-AAGACTGAA-C-TGA-TGGTTTTCG--CTCCGAAACATC--GCGCTAAGAAC--GTAGCT-------GA-ACTA--AGCATCTCGTTCGGAGG-CTGTGTCAT--TCA-CA-A---T-GCTCCGTACGT--A--AAAAAACC-T-----GGGTGCTTATTT-TG-ACAGAA-CCCTTTGC-ATGGAAAANC--AATGCGAC-GCAAT-AACGAGGTCGTG-CT-ACTT-GAACATTCGGG-ATATT-GG--AGTATCCGTCAGTGTATC-TCA-----GAGGTTGCATGT-AAGACG-CTCGT-CA-GNTCACT-TGTAACGTCTCGCCTTGACTACGGAAA-TGC-C-TTCCTCTAC-------GNCGT---TAA-AAACAGCGTCTTTAACA---AAGCTGCAAA-------GTGTACAGAACACCGCNGCTCGACT---TA----TCANTCGAACACGAAA---GTAC---CATATNACNCCGGTATTGAT-CAG-CCTACANTGGCTTCCGGTACAGTTCCGAA-TTCAATACAAANTTCTAGTGCACGCCTNCAAGGCCGCTAAACAGATTTGGCACCTGTATATCTCAAGGGANCTTANCNAGCCGTACNCAAACCCTGCGAGATTATTGCGCTCCGGAATCAANANCATGCTTTTNNAAGTTCCATCGGACCNGNACGAAGNCATATGGAGA
gi|1 : CACGA--TCTTGCTATATACCAC--GAGAT------ATACAAA---GACAA-GTGTCGCC-TTTATAG--TAAATTACTAA--AAACA-AAGC--AGAC-AGGGTTACTT-------CTCT----AGAAAAAG-AACTGAGTGTG-AA-GTGACTCGAAGGCATTGTATGA-TCTGACA-A-C-CG-ACTTCTTGGAAACAATCATAAGCCC-TCTCTACCCA-CCAGTGACTG-TGCCATCGC-TTTGTCC--AACAGCTTTT-CTGAT--T-TTTCACAGGGA-AGATCCAGAC-CATCAGA--GCT---A-TGCT--GCA--TGA-GGCGAACCAAACTAAGTGACTTAGAAA-CTGATTGCTTTGAG-AG-TAGA-TATTAAGTTTCAGTGG-TCA-CACCCTTGATGAGTTTAC--TGCAGCATCG---TGTG-ACGAG-GTGAAAAAA-CTG---C-TCAC--GAGCTCAACAT-CT-A-AGTCCTGTGAAC-TTGA--TT-CCTATCTC-GACTTTCCTGCTTAA-CAGTG-TGTTGACGCCTTCGTTCTG-GTAATCACAACAATAGTT-AAC-A-AATC-A-TTGT-GTGAATCT--GGGTGGTACCGATGA-ATTTCG-AACAGGCAATC-GTCA-GG-CCGC-TGTT---AAGAAGCCG---GGTT----TAGACAAAGAAGTTCTTT-AA--AAC-TATC-ACCCCG-TCTCGAATCTT-CCATTTGTGTCGAAAATTGTTG-AGAAGATTGTTGCAAA--GAGAAT-AGACCGT-------CATT-T--G-A-CTT-TAACTTTCTA-CATGAC-AACTTAC-AATCT-GC---GT-----ATCG--CTCATGTCATTCCACAGA-G--AC--A-A---A-CTT-CTCAGA-GTACA-------TCATG--ACAT--------T-GCGACTGCATTAGACAG-C--AACTGCTGT--ACTGT-CCTTG-T-AAGGTT-AGA-CCTGTCAGCTGCTTT-CGATGTCA--TTGA-TCATCA--CA---TTCT-GTTT-C---A-GC--GCC-TCG-AA-CAC-AC-----TTACGGGA---TAGCA--GGTTCTGCATT-ATCGTGGAT-CAAGTCGTA---CTT---AAG----TG-ACAGGT---CTC-AAC--G---TG-----T----AGCCA--T----TGGCTT------T------GTCT-T-A-TC---TGA-CA------A----CAGACCA---CT-TGAAA-------TAT-GTG-TGCCACAAGGC--TCT------------------GT-GCTT-GGACCAAAACT--A-TATTGTATGTTCTCAAAGCCGATCGGT-GA--AATCTGT-CG--TTTCATGA-CG-TGAAATATCACATA-AATGCAGA-T-GACACGC-A--AATCTACATT--G-TGG--T---------CGAACCA---GT-GGA--AAAATGGG--AGGAC-AT--ATCACCAAGACTCAAGAATTGTCT-CTC-----TG------GGATCCGTGAATGGATGAGCAT-CAATTTACTGAAGCTGAA-TCAGGAC-AAGACTGAA-C-TGA-TGG-ATTCG--CTCCGAAACATC--GCGCTAAAAAC--GTAGCT-------GA-ACTA--AGTATCTCGTTCGGAGA-CTGTGTCAT--TCA-CA-A---T-GCTCCGTACGTAAA--AAAAAACC-T-----GGGTTCTTATTT-TG-ACAGAA-CCCTTTGC-ATGGAAAAAC--AATGCAAC-GCAAT-AAGGAGGTCGTG-CT-ACTT-GAACATTCGGGAATATTGGG--AGTATCCGTCAGTGTATC-TCA-----GAGGTTGCATGT-AAGACG-CTCGT-CA-ACTCTCTGTGTTACATCTCGACTGGACTACAGCAA-CGC-C-TTGATTTAC-------GGCAT---TAACAAGCAGC-----TGACGGATAAGCTGCAGA-------GAGTACAGAACACAGCAGCCCGACT---TA----TTACACGAACACGGAAATCGTAC---CATATAACTACGGTACTGATGCAG--CTACACTGGCTTCCAGTG-AGTTCAGAA-GCCAATACAAACTTTTATTGTACGTCTTCAAGG-CGCTAAACA-ATTTGGCACCTGTATATCTCAAGGGAGCTTATCAAGCCGTACACAAACCCTGCGAGATTATTGCGCT-CGGAATCAAAATCAT-TTTTTTCAAGTTCCATC-GACCCGTACAAAAACATATGGAGA
gi|10 : TAC-AATCC-GT---CT-----ATCGG-CTCAT--CACTCAAC-GA-A--AC--T-GC--A-CTC-CTC-GA-GT-CA-------TTATA--AAAT--------A-TCTAC-ACCCTA-ACAA-G--AACTTC-GTTAACTGT-ACTC--T-CATGCT-TGA-TCT-TCAGCTGCAT--CGACGTTA--TATA-TTACCA--TA---TT-T-ATTT-C---G-GA--GAC-TCG-AA-CAC-AC-----GTTTGCCA---TATCT--GACGC-GCTTT-CT----GAT-CAATTC--A---ATT---GAC----CA-ACAG-T---C-C-AA--------G-----T----AAC-A--T----AGGCTC------GA-----GCCT-T-A-TC---GGA-TG-----------CAGAA-G---CTCTGAAA-------T-C-GGG-TGATCTAAGG---TCG----------------G-AC-CCTC-GGATGA------------CGCATGTTTCCAAACCTAATCGGA-AA--CATCTGTACGAAC--CATCA-CA-TGCAATACCAC-TG-CTTGCAGA-T-GACACTC-A--AATATACATC--G-TGA--T---------AGAGCCCGCTAT-G------ACTTAG--A-GAT-GTTCGTCCCC---TCTTAATAAC--TCT-CAC-----CGGACATCAGATC-----AT-GATGTTTAC-TAATCTTCTGAAGTTGAACCCAAGAT-AAAAC-GAA-T-TAA-C--TTTTT---CTCC
gi|11 : A-CA-A---TAGCCAGGTA-GT--A--AAAAACTT-T-----GGGGGCTTTTTTATG-A---AA-ACCTAAGCGATGGGAAAAC--CATCTGGT-GCAA
gi|16 : ctgtaaatgtattaacaaagccaataggacgaaaaatttgcccgaagaaccaatactatgtcatatcacgttaacagctcgacgacacgcagggtctatttagtaataaaatcgttcagacaactgggtctaaatgtttacaaagagacttcgaagcctgctttatatacagcatatatcagcaccaattggattagtttcatgcaaatatgctagataatgaaccacgacaagacagaagcttattgtgtatcagaccatcgagaaacagcaagccgtaaaCTTT-CGATGTGA--TCGA-TCATTA--GAAGATACC-TTTTAC---ATACTAGTC-TCG-AA--AT-AGAGATGTAAAGGGAAATTAACACTGCCTCTGCTTG-ATCTTGGATACAA-TCATA---TTCTGAAAG----TG-ACAA-T---GTC-AGC------TG-----T----AGCCGTTT----TGGTTTCCGAACT------GTCT-GAA-TCCCAGGA---------A----CTTATCG---AT-CG--G-------TA----G-TTCCGCAAGGG--TCT----------------GTGTGGCTC-GG-CTCGAGTT--G-CCT----TGTTC----AGGCAACCGATAGAATAATATGT--GA-CTTCATGT-CG-TGGACTATCACTTA-GAgtggccaagtactgttataattccagtttagaggaacataggaagaatcagataacctcatcgacgatcggtacatacaaaacataatatctcactgctcttcgctcacatcaagactagactatgctaat
gi|18 : -TGTAATGTCTCGCCTTGACTACGGAAA-TGG-A-CTCCTCTA----------CAT---T-A-AAACAGCGTATTTAACA---AAGCTGCAAA-------acttgtag
gi|2 : CACGAATCCTTGCTATATACCAC--GAGAT------ATACAAA----ACAAAGTGTCGCCATTTATAG--TAA-TT-CTAA--AA-CA-AAGCCAAGACCAGGGTT---T-------CTCT----AGAAAAAG-AACTGAGTGGTGAA-GTGACTCGAAGGCATTGTATGATCCTGACAGA-C-CG--CTTCTTGGAAACAATCATAAGCCCGTCTCTACCCA-CCAGTGACTG-TGCCATCGC-TTTGTCCC-AACAGCTTTTTCTGAT--T-TTTCACAGGGA-AGATCCAGACGCATCAGA--GCT-----TGCT--G-A--TGA-GGCGAACCAAACTAAGTGACTTAGAAA-CTGAATGCTTTGAG-AG-TAGAATATTAAGTTTCAGTG--TCA-CACCCTTGATGAGTTTAC--TGCAGCATCG---TGTG-ACGAG-GTGAAAAAAACTG---C-TCAC--GAGCTCAACAT-CTTA-AGTCCTGTGAAC-TTGA--TTTCCTATCTC-GACTTTCCTGCTTAA-CAGTG-TGTTGACGCCTTCGTTCTG-GTAATCACAACAATAGTT-AAC-A-AATCCA-TTGTTGTGAATCCTGGG-TGGTACCGATGA-ATTTCGAAACAGGC-ATC-GTCA-GG-CCGC-TGTT--TAAGAAGCCG---GGTT----TAGAC-AAGAAGTTCTTT-AA--AAC-TATCAACCCCG-TCTCGAATCTT-CCATTTGTGTCGAAAATTGTTG-AGAAGATTGTTGC-AA--GAGAAT-AGACCGT-------CATT-T--G-ACCTT-TAACTTTCTA-CATGAC-AACTTAC-AATCT-GC---GT-----ATCG--CTCATGTCATTCCACAGAGA--ACAAA-A---A-CTT-CTCAGA-GTACA-------TCATG--ACAT--------T-G-GACTGCATTAGACAG-C--AACTGCTGT--ACTGT-CCTTGATAAAGGTT-AGA--CTGTCAGCTGCTTTCCGATGTCAATTTGA-TCATCAACCA---TTCT-GTTTCC---A-GC--GCCTTCGAAA-CAC-AC-----TTACGGGA---TAGCAG-GGTTCTGCATTAATCGTGGAT-CAAGTCGTA---CTT---AAG----TG-ACA-GT---CTC-AA---G---TG-----TAA--AGCCA--T----TGGCTT------T------GTCT-T-A-TC---TGA-CA------A----CAGACCAG--CT-TGAAA-------TAT-GTG-TGCCAC-AGGC--TCT------------------GT-GCTTGGGACCAAAACT--A-TATTGTATG-TCTCAAAGCCGATCGGT-GA--AATCTGT-CGC-TTTCATGACCG-TGAAATATCACATA-AATGCAGA-T-GACACGCAA--AATCTACATT--GTTGGGTT---------CGAACA----GT-GGA--AAAATGGG--AGGACAAT--ATCACCAAGACTCAAGAATTGTCTCCTC-----TG------GGATCCGTGAATGGATGAGCATCCAATTTACTGAAGCTGAA-TCAGG-C-AAGACTGAA-C-TGA-TGA-TTTCG---TCCGAAACATC--GCG-TAA-AAC--GTAGCT-------GA-ACTA--AGTATCTCGTTCGGAGGACTGTGTCAT--TCAGCA-A---T-GCTCCGTACGTAAA--AAAAAACC-T-----GGGTTCTTATTT-TGAACAGAACCCCTTTGC-ATGGAAAAACCAAATGCAAC-GCAATAAAGGAGGTCGTGTCT-ACTT-GAACATTC-GA-ATATT-GGGAAGTATCCGTCAGTGTATCTTCA-----GAGGTTGCATGT-AAGACGCCTCGT-CA-
gi|20 : TGCCGATGA-ATTTCA-AACAGGCCATC-GTCA-GG-CCGC-TGTT--GAAGAAGCCG---GGTT----a
gi|21 : AT-CAATTTCCTGAAGCTGAA-TCAGGAC-AAG
gi|3 : CACGAGT-CTTGCTATATACCAC--GAGATGAGAATATACAAA---G-CAATGTGTCGCC-TTTATAGAGTAAATTACTAA-----CACAAGC--AGAC-AGA-TTACTTTTCTCTCCTCT----AGAAAATT-A-CTGAGTGTG--A-GTGACTCAAAGGCATT-TATGGGCCTGA-A-A-C-CGGACTTCTTGGAAACA-TCA--AGACT-TCTCTCTCCAGCCAGCGCCTG-TGACA--GC-TTTGTCCGAAACAGATTTT-CTGAAAAT-TTTCACAGGGCCAGATCCAGAC-CATCAG---GCT---A-TGCTT-GCAATTGA-GGCGAACCAATCTAAGTGACTTAGAAA-CTGAT-GCT--GAG-AGGCCGA-TATTAA--TTC-GTGGATCA-CACC-TTG-TGAGTTTAC--TGCAGCATCG---TGTGGACGAG-GTGAAAAAA-CTG---CCTCACTTGAGCTCACCA--CT-A--GTCCTGTGAAC-TTGA--T--CCTATCCC-GACTTTTCTGCTTAAACAGTG-T-TTGACGC-TTCGTTCCGAGTAATCACAACGATAGTT-AAC-AGAATC-A-TTGT-GCGAATCT--GT-TG-TGCCGATGA----TTG-AA-AAGCCATC-GTCA-GG-GCGC-TGTT--GAAGAAGCCG---GGTT----TGGACAAAGAAGTC--TT-AA--AAC-TATC-GCGCGG-TTTCGAATCTT-CCATTTGTGTCGAAA-TTGTTG-AGA-GATTGTT-CAAA--GAGAAT-AGACCATTCACACACATT-TTGG-A-CTT-CAACTT-CT--CATGTC-AA-TTGC-AATCT-GC---GT-----ATCGGCTTCA-GTCATCCTACAGA-AGTAC--A-G---A-CTT-CTCAGA-GTACA-------TCATG--ACAT--------T-GCG-CTGCATTAGACAA-TCTAACTGCTGT--GCTGT-CCT-G-T-AATGTTTAGATCCTGTCAGCTGCTTT-CGATGTCA--TTGA-TCATCA--CA---TTCT-GTTT-C---G-GC--GCC-TCG-AA--ACAAC-----TTACGGGA---TAGCA--G--TTTGCATT--TCGTGGAT-C-AGT-GTA---CTT---AAG----TG--CATAT---CCC-AAT--GGT-TG-----T----AGCCA--T----TGGC-T------T------G--T-T-ATTC---GGC-CG------------AGA-CA---CT-TGAAA-------TACGGTG-TGCCACAAGGC--TCTTGAGGGGGGGGGGGGGG-GT-GCTT-AGACC-AAACTAAA-TATCGTATGTTCTCAAAG-CGATCGGT-GAT-AATCTGT-CGA-CTTC-TGA-AA-TGCAATATCACATA-TATGGCGA-TAGACACGG-C--AATCTAC-TT--G-TGG--T---------CGAA-C----AT-GGA--AAATTGGG--AGGAC-AT--ATCACCAAGACTCAATAATTGTCT-CTC-----TG------AGATCCGTG--TGGATGAGCAT-CAATTTCCTGAAGCTGAA-TCAGGAC-AAGACTGAATC-TGA-TGGTTTTCG--CTCCGAAACATC--GC-CTAAGGAC--GTAGCT--------A-ACT---AGCATCTCGTTCGGAGG-CTGTGTCTTCATCA-CG-A---T-GCTCCGTACGT-----AAAAAACC-T-----GGGTGCTT-TTT-TG-ACAGAA-CC--TTGC-ATGGAAAACC--AATGC-AC-GC-AT-AACG-GGTCGTG-CT-ACTTGGAACATTCGGG-ATATT-GG--CGTATCCGT-AGTGTATC-TCT-----GAGGTGGCCAGT-AAGACG-CTCGT-CA-
gi|4 : gCACGAGTTCTT-CTATATACCAC--GAGAT------ATACAAA---GACAATGTGTCGCC-TTTATAGAGTAAATTACTTA--ACACA-A-GC--AGAC-AGGATTACTT-------TTCTTTCTAGAAAAAT-TACTGAGTGTGGAA-GTGACTCAAAGGCATTGTATGG-CCTGAAA-A-C-CG-ACTTCTTGGAAACAATCA--AGACC-TCTCT-CCTAGCCAGCGACTG-TGACATAGC-TTTGTCC--AACAGATTTT-CTGAAA-T-TTTCACAGGGA-AGATCCAGAC-CATCAGG--GCT---AATGCTT-GCA--TGA-GGCGAACCAA-CTAAGTGACTTAGAAAACTGAT-GCTTTGAG-AG-CAGA-TATTAAGTT-CAGTGG-TCA-CACC-TTGATGAGTTTAC--TGCAGCATCG---TGTG-ACGAG-GTGAAAAAA-CTG---C-TCACT-GAGCTCACCA--CT-A-AGTCCTGTGAACCTTGA--T--CCTATCCC-GACTTTTCTGCTTAAACAGTG-T-TTGACGC-TTCGTTCCGAGTAATCACAACGATAGTT-AAC-A-AATC-A-TTGT-GCGAATCT--GT-TG-TGCCGATGA-ATT--A-AACAGGCCATC-GTCA-GGGCCGC-TGTT--GAAGAAGCCG---GGTT----TGGACAAAGAAGTC--TT-AA--AAC-TATC-GCGCAG-TTTCGAATCTT-CCATTTGTGTCGAAA-TTGTTG-AGAGAGTTGTT-CAAA--GAGAAT-AGACCAT-------CATT-T--GGA-CTT-CAACTTTCTA-CATG-C-AA-TTGC-AATCT-GC---GT-----ATCG--CTCATGTCATCCTACAGA-AGTAC--A-G---A-CTT-CTCAGA-GTACA-------TCATG--ACAT--------TTGCGACTGCATTAGACAATC--AACTGCTGT--GCTGT-CCTTG-T-AATGTTTAGA-CCTGTCAGCTGCTTT-CGATGTCA--TTGA-TCATCA--CA---TTCT-GTTT-C---G-GC--GCC-TCG-AAACA--AC-----TTACGGGA---TAGCA--GGTT-TGCATT--TCGTGGAT-CAAGTCGTA---CTT---AAG----TG-ACATAT---CTC-AAT--G---TG-----T----AGCCA--T----TGGCTT-------------GTTT-T----C---GGC-CG------A------GAC-A---CT-TGAAA-------TAG-GTG-TGCCACAAGGC--TCTT---------------G-GT-GCTT-AGACCAAAACT--AATAT-GTATGTTCTCAAAGCCGATCGGT-GAT-AATCTGT-CGA-CTTCATGA-AA-TG-AATATCACATA-TATGCAGA-T-GACACGC-A--AATCTACATT--G-TGG--T---------CGAAC-----AT-GGA--AAATTGGG--AGGAC-AT--ATCACCAAGACTCAATAATTGTCT-CTC-----TG------AGATCCGTGAATGGATGAGCAT-CAATTTCCTGAAGCTGAA-TCAGGAC-AAGAC-GAA-C-TGA-TGGTTTTCG--CTCCGAAACATC--GCGCTAAGGAC--GTAGCT-------GA-ACTA--AGCATCTCGTTCGGAGG-CTGTGTCAT--TCA-CAGA---T-GCTCCGTACGT-----AAAAAACC-T-----GGGTGCTTATTT-TG-ACAGAA--CCTTTGC-ATGGAAAACC--AATGC-AC-GC-AT-AACGAGGTCGTG-CTAACTT-GAACATTCGGA---ATT-GG--CGTATCCGT-AGTGTATC-TCT-----GAGGTTGCAGGTAAAGACG-CTCGT-CA-a
gi|5 : gCACGAGT-CTTGCTATATACCACACGAGAT------ATACAAAAAGGACAA-GTGTCGCC-TTTATAGA---AATTAC-AATCAAA-A-AAAC--AGAC-AGA-TTACTT-------CTCT----AGAAAAAATAACTGAGTGTGGAAAGTGACTCGAAGGCATGATATGG-CCTGACA-A-AACG-ACTTCTTGGAAACAGTCAAGAGCCC-TCTCTAACC--CCAGTGACTGTTGACATCGCATTTGTCC--CATAA--------GATA-TGTTTCACCAGGA-AGATCCAGAC-CATCAGAGGGCTATAA-TGCTGAGCA--TGAGGGCGAACCAA--TACGTGACTCAGAAA--TGA-TGCTTTGAGAAG-CAGA-TATTAA-TTACAGTGG-TCAGCACCCTTGATGAGTTTACTTTGCAGCATCGAGATGTG-ACGAG-GTGAAAAAA-ACGAGAC-TCAC--G-GCTCATCATACT-ATAGTCCTGTGACA-TTGAATTC-CCTATCCCGGACTTTCCTGCTTAGACAGTGATGTTG------TTGTT---GGTAATCACAACGATAGTTAAACAA-AATC-ATTTGT-GCGAATCTA-AA-TGGTACCGATGAGATTTCA-AACA-GCAATCAGTCAGGG-CCGCTTGTTGAGAAGAAGCCGAGAGGTTTGTGTGGAC-AAGAAGTTCTTT-AATTTACGTATC-GCCACGTTTTCGAATCTTACCA-TTGT-TCGAAAATTGTTGAAGAAGATTGTTGCAAAAGGAGAAT-A-----TTTA----CATTATG-G-A-CTTGCAACTTTCTACCATGACAAACTTGCAAATCT-GCTTTGTTCTNNNNNN--NNNNNNNNNNNNNNNNNN-N--GC--ATGTC-A-TTT-TACAGA-G-ACAGCACTTCTCATAGTACATCATGACATT-GCGACTGCATTAGACAA-C--AACTGCTGT--GCTGT-CCTTG-T-AATGTT-AGA-CCTGTCAGCTGCTTT-CGATGTCA--TTGA-TCATGA--CA---TTCT-GTTT-C---G-GC--GCC-TCG-AA-CTC-AC-----TTACGGGA---TAGCA--GGTTCTGCATT-ATCGa
gi|6 : aatagtaggacatattgataaaacacatgagggacaacagataactatcttgcaggcaagtccccggtgtcagatagtcagtacttgtgtgactataaggagtatgtcctcctcaggatcataaatgggaatttacactttactgccaaatttctacgatttcgacgcaacacaaaacgggtttccttcaggaattacgcaatatcataacttaacgaatttaataaagatacattgaaaaacgtcaactgcagctgtatcagcagtaaatacaggttgacatctcgtcaaaattctaaataagaatgcgcgcagaggtctttggacaagcattgcttttttacaatcaaaagagatcgtcctgcggaccgaactctccatgggtactcggatgaattgcgagaaagccaaacgcgacatgacgaaaaaccggaagcgtgagtggacaCACGA--TCTTGCTATATACCAC--GAG-T------ATACAAA---GACAA-GTGTCGCC-TTTATAG--TAAATTACTAA--AA-CA-AAGC--AGAC-AGGGTTACT--------CTCT----AGAAAAAG-AACTGAGTGTG-AA-GTGACTCGAAGGCAA-GTATGA-TCTGACA-AAC-CA-GCTTCTTGGAAACAATCATGAGCCC-TCTCTACCCA-CCAGTGACTG-TGCCATCGC-TTTGTCC--AACAGCTTTT-CTGAAT-T-TTTCACAGGGA-AGATCCAGAC-CATCAGA---CT---A-TGCT--GCA--TGA-GGCGAACCAAACTAAGTGACTTAGAAA-CTGATTGCTTTGAG-AG-TAGA-TATTAAGTTTCAGTGG-TCA-CACCCTTGATGGATTTAC--TGCAGCATCG---TGTG-ACGAGTGTG-AAAAA-CTG---C-TCAC--GAGCTCAACAT-CT-A-AGTCCTGTGAAC-TTGA--TT-CCTATCCT-GACTTTCCTGCTTAAACAGTGTTGTTGACGCC-TCGTTCTG-GT-ATCACAACAATAGTT-AAC-A-AATC-A-TTGT-GTGAATCT--G--TGGTACCGATGA-ATTTCG-AACAGGCAATC-GTCA-GG-CCGC-TGTT--TAAGAAGCCG---GGTT----TAGACAAAGAAGTTCTTTAAA--AAC-TAT--ACCCCG-TCTCGAATCTT-CC-TT--TGTCGAAAATTGTTG-AGAAG-TTGTTGCAA----AGAATAAGACCGT-------CATT-T--G-A-CTT-TAACTTTCTA-CATGAC-AACTTAC-AATCT-GC---GT-----ATCG--CTCATGTCATTCCACAGA-G--AC--A-AAACA-CTT-CTCAGA-GTACA-------TCATG--ACAT--------T-GCGACTGCATTAGACAG-C--AACTGCTGT--ACTGT-CCTTG-T-AAGGTT-AGA-CCTGTCAGCTGCTTT-CGATGTCA--TTGT-TCATTA--CA---TTCT-GTTT-C---A-GC--GCC-TCG-AA-CAC-AC-----TTACGGGA---TAGCA--GGTTCTGCATT-ATCGTGGAT-CAAGTCGTA---CTT---AAGGAGCTGCACAGGTATCCTCAAAC--GCTCTGACCGATGATAAGCCA--TGGACTAGCTT------T------GTCTCT-ACTCT--AGACCGAGATATA----CAGACTC---CT-TAAAATAAAGACTAT-GTGTTGCCACAAAGCTGTCTA---------------G-GT-GCT
gi|7 : ggcgACGTGC-AATCTTGC---AT-----ATCG--CGCTTGTCACTCTACCGA-A--AC--T-G---CTCTTACTTACATGTTCA-------TCACG--ACAT--------T-GTGTCTGCATTAGACGG-A--AATTCTTGT--A-TGTCCCTTG-T-GATGCT-CGA-CCTTTCTGCCGCCTT-TGATGTGA--TAGATTCACAA--CA---TTCTCATCT-CATTG-G--------CG-A--------------TATGGAA---TATCT--GGATCAGCATT-GGCATGGTT-TAGATCATATCTCCT----GG----TC-GCAG------TC-AGCAGG---TT-----T-----GCAA--T----TGGTTT------TAAAACAGTTT-----TC---AG--CG------ATGTTCAGGCTATGTTT-TG--------------GCG-TTTCCCAGGGC--TCT----------------GTGT-G----GGACCACGTCT--T-TACTGCATGTTTTCTAAACC-ATTGGT-GA--AATATGC-CGA-CGTCATTA-CATTGTGCTATCAC-TGTTATGCCGACT-GACACGC-AGGAA--TATATG--G-TTA--TAAAACCTAACGAACC----CT-GAACCAGAATTGC--A-GAC------------AGACTTCAAAAGTGCCT-CTCAAATATA------AGCCCC-----TGGATGAA-GT-CAA-ATACTAAAACTAAA-TCAGGACAAAAACTGAA-CTTGATTCATTTTTG--CTCCCAAAAA----G----AAGATCTTGTGACTTCTTTTAGA-TTTGTCAAC-TCACATTTGGAGG-ATCGATCAT--T-A-CA-AG--T-GTGTCGTGCGT--T--AAAAAACCTT-----TGGTGTTTTCTT-TG-ATAAGA-TCTAT--C-ATGGAacattgatccaaaaaata
gi|7 : TCAT-CA-GATCACT-TGTAATGTCTCGCCTTGACTACGGAAAATGC-CACTCCTCTACTCTGTTAACCGT---TAA-AAACAGCGTCTTTAACA---AAGCTGCAAA-------ATGTAC-GAACA-CGCTGCTCGACtttcccaataaaacatctagtcaaactgtgctactcccaacttaaaaacatcgatagaattagtaactgtccaacaatcatcagatcacttgtaatgtctcgccttgactacggaaaatgccactcctctactctgttaaccgttaaaaacagcgtctttaacaaagctgcaaaatgtacgaacacgctgctcgac
gi|8 : acgtgcaatcttgcatatcgcgcttgtcactctaccgaaactgctcttacttacatgttcatcacgacattgtgtctgcattagacggaaattcttgtatgtcccttgtgatgctcgacctttctgccgcctttgatgtgatagattcacaacattctcatctcattggcgatatggaatatctggatcagcattggcatggtttagatcatatctcctggtcgcagtcagcaggtttgcaattggttttaaaacagttttcagcgatgttcaggctatgttttggcgtttcccagggctctgtgtgggaccacgtctttactgcatgttttctaaaccattggtgaaatatgccgacgtcattacattgtgctatcactgttatgccgactgacacgcaggaatatatggttataaaacctaacgaaccctgaaccagaattgcagacagacttcaaaagtgcctctcaaatataagcccctggatgaagtcaaatactaaaactaaatcaggacaaaaactgaacttgattcatttttgctcccaaaaagaagatcttgtgacttcttttagatttgtcaactcacatttggaggatcgatcattacaagtgtgtcgtgcgttaaaaaacctttggtgttttctttgataagatctatcatggatttcccaataaaacatctagtcaaactgtgctactcccaacttaaaaacatcgatagaattagtaactgtccaacaaGCTGA-C-GACACGC-A--GGTC--CATTTAG-TGA--T---------AAAACC----GTTAGA--CAACTGGACTAAGTT--T--AT-AGAAAGACTCGAAGCCTGTTT-AGC-------------AGAT----------ATCAGCA---AATATGCTGAAATTGAA-CCATGAC-AAGGCAGAG-T-TGA-TAGTTTTCGGACCTCGAAACAGCAAGCGTTA----C--CTAGCT-------AATACCA---GCATTACTTTCGATGG-ATTTGTCAT--T----A-AGTCT-GTTCCG---GT--ATTCAAAAACT-TAGGGGGGGGGGGTATTT-TG-ACGAAA-ATCTTAGC-ATGAGATACC--A-TTTGTCTGCAAT-GGCTAAGTTTTG-TT-ATTT-------CCAG-----TT-G---AGTAAC-------ATACC-TCATCGACGATGATACATGC-AAAACA-TTAATACATGCTC--T-CGTCACATCAAGGCTAGACTATGCTGA-TGC-A-TTGTTATAT-------GGCCTATCTAA----CAGTGC---TAACA---A-----CAAATTAGTACGTGTACAAAATACCACAGCAAGGAT---GA----TCAGTCGCACTAAAAA---GTATGATCATATTACACCGGTATTGA--CAGACCTTCATTGGCTTCCGGTACAGTATTGTA-TTCAATTCAAAGTTCTTGTGCATGCCTACAAGGCCGTT---CAGATTTGG-ACCTA-----CTC-----ACCTTAGCTAACTG-ACTC-AACC--------TTATT---CTCCAGAA--AACAGTATGCTTTTGAAAGTTCC-TCGGACTAGAACGAAGTCATATGGAAA
gi|9 : CGTGT-CGAACA-ATCTT-CA-GGTCACT-TGTAATGTCTCGCCTTGACTACGGAAA-TGCAC-TTCCTCTAC-------TCTGT---T-A-AAACAGCGTCTTTAACA---AAGC-ACAAAC------ATGTACAGAACACTGCTGCTCGACTATGTACCGCTCCTTCAAACACGA------------CATATCACCCCATT-TTAAT-CTC-TCTACAATGGCTACTGTTAC--TTCCGAATTTCAGTACAAAATCCTAGTcagacgcttgactattttgcgccaataatgtggatcgcctaaccatcaggattatattgtgccaaatcactggat
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ATAGCGGGACATATGTCCCGGGACATAAGTCCCGGACTACAATACACCCACCCCTATGTTGCAGGCAGTCCCGCGTGTCCGATAGTCCAGTACTTGTGGTGACCTCAAGGGTATGTCCTCGTTGCTCAGTCATATGGGAATTTACACTTTAACTGCAAATATCTACGATTTCGACGCAACACAACGGTTTCCTTCAGAAATTCAACGCAATGTCTCTTAACGAATTTCAATAAAGATATTGACGTCAAACTTGCGATGTATCGCAGTGATATACAGTTGGACATTTTTGTTGAAATTATATAGATAGAATGCGCGCGAGGTCCCTTGAAACAAGCATGCTGCTTTAGCAGTCAAAAGAGATCGTCCTGCGGCCGAACTTCTCCGTGGTTACTCGATGCTTTGGCGACAGACGGAAATCCGAGCGTGAGTGGAGGCCG
Unaligned ( gi|13 ): CAATCGCGGGACATATGTCCGGGACATAAGTCCCGGACTACAAATACACCCACCCCATGTTGCAGGCAGTCCCGCGTGTCCGATAGTCAGTACTTGTGTGAATCTCAGGTAGTTGTCCTCCTCAGATCATATGGGAATTTCAACTTTACTGCAAATATCTACGATTTCGACGCAACACAAAACGGTTTCCTTCAGGAAATTACGCAATGTCTAACTTAACGATTTCATAAAGATATTGAAACGTCAACTGCGATGTATCCGCAGTGAATACAGTTGGACATTTTGTTGAATATAATAAGAATGCGCGCGAGGTCTTGAACAAGCATGCTGCTTTACAGTCAAAAGAGATCGTCCTGCGCGGCCATCTCCGTGGTTACTCGACTGAATTGCGACAGACGGAAATCCGAGCGTGAGTGG
Unaligned ( gi|14 ): TATGTTGCAGGCAGTCCCGCGTGTCGATAGTCAGTACTTGTGGTGACTCTCAGGGTATGTCCTCCTCAGATCATATGGGAATTTACACTTTACTGCAAATATCTACGATTTCGACGCAACAACAAACGGTTTCCTTCAGGAAATTACGCAATGTCTAACTTAACGAATTTCAATAAAGATATTGAAACGTCAACTGCAGATGTATCCGCAGTGAATACAGTTGGACATTTTGTTGAATTATATAATAAGAATGCGCGCGAGGTCTTGAAACAAGCATGCTGCTTTACAGTCAAAAGAGATCGTCCTGCGGCCGAACTCTCCGTGGTTACTCGACTGATTGGCGACAGACGGAAATCCGAGCGTGAGTGGAGCCG
Unaligned ( gi|15 ): TCTTGCGAACTAGAAGTCCAATTCCAAACAAATCTGCTTAAGCAATGTTTGAACTCTGTGCTTCCTATTGATACGAAATCATAAACAGATCATTTTCAAAACTCAACAGGACGCACCCTCGTTGTAAGAATGCTAATGTTCGACCACTTATCAAGCGACCAATGGCTAGACAAAGACGAATGTAAGAAATTATGCGTCCGGTATCCGAATTACCGTTCTGAGGCTAAAAGTCCTTGAAAAGCCGGTAGCATCGCGATTGGACAAACACACCGCGATTATAAATGATCTGCAACG
Unaligned ( gi|17 ): TGGGGGCTTATTTTGGATGAAACTAAGCATGGAAAACATCTGTCTGCACTCTGAGTGGCCAAGTCTTGTTATTTTCCAGTTGAGGAACATAGGAAGAATCAGATACTGCCACCTATGAACTCGTTTTAACAAAACTTGAT
Unaligned ( gi|19 ): CCACGTGCAACTGCATATCACGCTTGTCACTCTACCAAACTGCTATACTACGTGTTCATCACGAGA
Alignments
lowQualScore : 111 111111 111 2 22 11111 2222222 1111 1 1 11 1 11 111 111 11111 22 1 11 111 111 11 11 11111 1 11 1 22222 111 111 1111 3333333 11 11111 11 1111 22222222 1111111 11111111 1111 1 11111 11 11 1111 222222 3333333333333333333 1111 555555555555555555555555555555555555555555555555555555 22222222222 555555555555555555 11111111 11 222222222 111111 11111 2222222222222 111111 22222222 111 111 33333 11111 11 1 2222 111 1 222222 111 333333333333333333 111 111 3333333 444444444 555555555555 3333333 11 1 1 222 1 1 22222 22222 1 1 33333333 222 1 11 1 1 1
lowQualScore : 888 99 999999 111 0 6 88 88888 6 99 6 9 1111111 4444 77 5 6 44 3 2 6 777 88 1 55 6 3 3 0 6 1 6 55 6 6 999 6 6 6 000 77777 22 99 6 1 6 00 6 6 6 6 3 6 6 6 99 111 6 6 6 111 6 55 1 44 6 6 6 66666 6 7 3 6 44 2 8 6 6 6 6 6 6 22222 6 5 5 6 5 5 5 5 222 000 2222 7 6 6 99 6 6 6 6 7 6 1 1 6 99 6 3333333 6 55 6 6 6 6 3 6 4 5 5 888 22222 11 0 1 4444 66666666 5 5 5 0 6666666 66 88888888 5 0 0000 66 5 5 5 0 5 4 66 4 66 777 4 8 99999 66 4 4 99999 11111 777 00 0 00 5 1 0 888 888 0000 5 000000 5 6666666666666666666 66 0000 333333333333333333333333333333333333333333333333333333 5 3 33333333333 5 66 555555555555555555 5 88 55 0 66666666 0 0 1 5 99 5 77 1 7777 6 8 66 1 5 5 8888 77 5 77 222222222 999999 5 77 1 77 6 55555 0 1 1 5 6666666666666 666666 0 5 1 5 5 8 666 5 666 77 3 99 77 5 99 22222222 6 000 6 99 666 5 555 5 0 22222 5 44444 5 5 5 22 5 5 1 99 2 6 7 8 0 8 8 8 3 0000 8 111 5 8 111111 6 6 5 5 1 9 8 1 1 1 8 666 777777777777777777 88 111 444 0 5 4444444 3 22 1 1 111111111 1 333333333333 1 1 7 4444444 1 44 3 3 1 1 5 111 5 5 77777 66666 1 1 1 5 1 5 44444444 000 5 88 1 1 5 22 5 5 1 1 1
lowQualScore : ... .. ...... ... . . .. ..... . .. . . ....... .... .. . . .. . . . ... .. . .. . . . . . . . .. . . ... . . . ... ..... .. .. . . . .. . . . . . . . . .. ... . . . ... . .. . .. . . . ..... . . . . .. . . . . . . . . ..... . . . . . . . . ... ... .... . . . .. . . . . . . . . . .. . ....... . .. . . . . . . . . . ... ..... .. . . .... ........ . . . . ....... .. ........ . . .... .. . . . . . . .. . .. ... . . ..... .. . . ..... ..... ... .. . .. . . . ... ... .... . ...... . ................... .. .... ...................................................... . . ........... . .. .................. . .. .. . ........ . . . . .. . .. . .... . . .. . . . .... .. . .. ......... ...... . .. . .. . ..... . . . . ............. ...... . . . . . . ... . ... .. . .. .. . .. ........ . ... . .. ... . ... . . ..... . ..... . . . .. . . . .. . . . . . . . . . .... . ... . . ...... . . . . . . . . . . . ... .................. .. ... ... . . ....... . .. . . ......... . ............ . . . ....... . .. . . . . . ... . . ..... ..... . . . . . . ........ ... . .. . . . .. . . . . .
lowQualScore : 222 22 222222 777 0 7 88 77777 7 22 7 3 7777777 2222 77 0 7 22 3 5 7 555 33 7 33 7 2 3 7 7 0 7 88 7 7 333 7 7 7 888 55555 55 22 7 7 7 88 7 7 7 7 5 7 7 7 22 777 7 7 7 777 7 88 0 00 7 7 7 77777 7 3 3 7 00 2 0 7 7 7 7 7 7 77777 7 7 7 6 7 7 7 7 111 000 1111 3 7 7 22 7 7 7 7 3 7 7 7 7 22 7 3333333 7 88 7 7 7 7 5 7 3 0 0 888 55555 99 5 4 8888 00000000 0 0 0 4 2222222 99 11111111 0 4 1111 99 0 0 0 0 0 4 11 4 11 888 4 9 33333 11 4 4 44444 11111 888 66 1 77 0 4 2 888 888 6666 0 000000 0 5555555555555555555 99 6666 000000000000000000000000000000000000000000000000000000 0 2 99999999999 0 99 666666666666666666 0 44 00 3 00000000 1 7 7 7 33 7 11 4 7777 6 7 77 6 7 7 0000 99 7 99 999999999 000000 7 99 0 99 6 11111 7 4 0 7 7777777777777 666666 7 0 0 0 0 7 000 7 111 99 2 22 77 2 22 77777777 7 888 7 22 888 7 777 7 7 33333 7 33333 4 7 7 33 4 7 0 22 0 7 3 0 8 0 0 0 2 6666 0 666 0 0 444444 7 7 7 7 0 8 0 0 0 0 0 000 444444444444444444 88 222 000 8 6 0000000 2 88 0 2 777777777 0 000000000000 0 0 3 0000000 0 00 7 3 0 0 0 555 0 0 55555 00000 0 0 0 5 0 5 00000000 000 0 00 0 0 0 00 5 0 0 0 0
consensus : CACGAGTTCTTGCTATATACCAC--GAGAT------ATACAAA---GACAA-GTGTCGCC-TTTATAGA-TAAATTACTAA--AAACA-AAGC--AGAC-AGGGTTACTT-------CTCT----AGAAAAAG-AACTGAGTGTGGAA-GTGACTCGAAGGCATTGTATGG-CCTGACA-A-C-CG-ACTTCTTGGAAACAATCATGAGCCC-TCTCTACCCA-CCAGCGACTG-TGNCATCGC-TTTGTCC--AACAGCTTTT-CTGANA-T-TTTCACAGGGA-AGATCCAGAC-CATCAGA--GCT---A-TGCT--GCA--TGA-GGCGAACCAAACTAAGTGACTTAGAAA-CTGATTGCTTTGAG-AG-CAGA-TATTAAGTTTCAGTGG-TCA-CACCCTTGATGAGTTTAC--TGCAGCATCG---TGTG-ACGAG-GTGAAAAAA-CTG---C-TCAC--GAGCTCANCAT-CT-A-AGTCCTGTGAAC-TTGA--TT-CCTATCCC-GACTTTCCTGCTTAAACAGTG-TGTTGACGCCTTCGTTCCGAGTAATCACAACGATAGTT-AAC-A-AATC-A-TTGT-GCGAATCT--GN-TGGTGCCGATGA-ATTTCG-AACAGGCNATC-GTCA-GG-CCGC-TGTT--GAAGAAGCCG---GGTT----TGGACAAAGAAGTTCTTT-AA--AAC-TATC-GCCCCG-TCTCGAATCTT-CCATTTGTGTCGAAAATTGTTG-AGAAGATTGTTGCAAA--GAGAAT-AGACCGT-------CATT-T--G-A-CTT-CAACTTTCTA-CATGAC-AACTTGC-AATCT-GC---GT-----ATCG--CTCATGTCATTCCACAGA-A--AC--A-G---A-CTT-CTCAGA-GTACA-------TCATG--ACAT--------T-GCGACTGCATTAGACAG-C--AACTGCTGT--ACTGT-CCTTG-T-AATGTT-AGA-CCTGTCAGCTGCTTT-CGATGTCA--TTGA-TCATCA--CA---TTCT-GTTT-C---G-GC--GCC-TCG-AA-CAC-AC-----TTACGGGA---TAGCA--GGTTCTGCATT-ATCGTGGAT-CAAGTCGTA---CTT---AAG----TG-ACAGGT---CTC-AAC--G---TG-----T----AGCCA--T----TGGCTT------T------GTCT-T-A-TC---GGA-CG------A----CAGACCA---CT-TGAAA-------TAC-GTG-TGCCACAAGGC--TCT----------------G-GT-GCTC-GGACCAAAACT--A-TATCGTATGTTCTCAAAGCCGATCGGT-GA--AATCTGT-CGA-CTTCATGA-CG-TGNAATATCACATA-NATGCAGA-T-GACACGC-A--AATCTACATT--G-TGG--T---------CGAACC----GT-GGA--AAANTGGG--AGGAC-AT--ATCACCAAGACTCAANAATTGTCT-CTC-----TG------AGATCCGTGAATGGATGAGCAT-CAATTTNCTGAAGCTGAA-TCAGGAC-AAGACTGAA-C-TGA-TGGTTTTCG--CTCCGAAACATC--GCGCTAAGAAC--GTAGCT-------GA-ACTA--AGCATCTCGTTCGGAGG-CTGTGTCAT--TCA-CA-A---T-GCTCCGTACGT--A--AAAAAACC-T-----GGGTGCTTATTT-TG-ACAGAA-CCCTTTGC-ATGGAAAANC--AATGCGAC-GCAAT-AACGAGGTCGTG-CT-ACTT-GAACATTCGGG-ATATT-GG--AGTATCCGTCAGTGTATC-TCA-----GAGGTTGCATGT-AAGACG-CTCGT-CA-GNTCACT-TGTAACGTCTCGCCTTGACTACGGAAA-TGC-C-TTCCTCTAC-------GNCGT---TAA-AAACAGCGTCTTTAACA---AAGCTGCAAA-------GTGTACAGAACACCGCNGCTCGACT---TA----TCANTCGAACACGAAA---GTAC---CATATNACNCCGGTATTGAT-CAG-CCTACANTGGCTTCCGGTACAGTTCCGAA-TTCAATACAAANTTCTAGTGCACGCCTNCAAGGCCGCTAAACAGATTTGGCACCTGTATATCTCAAGGGANCTTANCNAGCCGTACNCAAACCCTGCGAGATTATTGCGCTCCGGAATCAANANCATGCTTTTNNAAGTTCCATCGGACCNGNACGAAGNCATATGGAGA
Reference ( family-1163 ) : CACGAGTTCTTGCTATATACCAC--GAGAT------ATACAAA---GACAA-GTGTCGCC-TTTATAGA-TAAATTACTAA--AAACA-AAGC--AGAC-AGGGTTACTT-------CTCT----AGAAAAAG-AACTGAGTGTGGAA-GTGACTCGAAGGCATTGTATGG-CCTGACA-A-C-CG-ACTTCTTGGAAACAATCATGAGCCC-TCTCTACCCA-CCAGCGACTG-TGNCATCGC-TTTGTCC--AACAGCTTTT-CTGANA-T-TTTCACAGGGA-AGATCCAGAC-CATCAGA--GCT---A-TGCT--GCA--TGA-GGCGAACCAAACTAAGTGACTTAGAAA-CTGATTGCTTTGAG-AG-CAGA-TATTAAGTTTCAGTGG-TCA-CACCCTTGATGAGTTTAC--TGCAGCATCG---TGTG-ACGAG-GTGAAAAAA-CTG---C-TCAC--GAGCTCANCAT-CT-A-AGTCCTGTGAAC-TTGA--TT-CCTATCCC-GACTTTCCTGCTTAAACAGTG-TGTTGACGCCTTCGTTCCGAGTAATCACAACGATAGTT-AAC-A-AATC-A-TTGT-GCGAATCT--GN-TGGTGCCGATGA-ATTTCG-AACAGGCNATC-GTCA-GG-CCGC-TGTT--GAAGAAGCCG---GGTT----TGGACAAAGAAGTTCTTT-AA--AAC-TATC-GCCCCG-TCTCGAATCTT-CCATTTGTGTCGAAAATTGTTG-AGAAGATTGTTGCAAA--GAGAAT-AGACCGT-------CATT-T--G-A-CTT-CAACTTTCTA-CATGAC-AACTTGC-AATCT-GC---GT-----ATCG--CTCATGTCATTCCACAGA-A--AC--A-G---A-CTT-CTCAGA-GTACA-------TCATG--ACAT--------T-GCGACTGCATTAGACAG-C--AACTGCTGT--ACTGT-CCTTG-T-AATGTT-AGA-CCTGTCAGCTGCTTT-CGATGTCA--TTGA-TCATCA--CA---TTCT-GTTT-C---G-GC--GCC-TCG-AA-CAC-AC-----TTACGGGA---TAGCA--GGTTCTGCATT-ATCGTGGAT-CAAGTCGTA---CTT---AAG----TG-ACAGGT---CTC-AAC--G---TG-----T----AGCCA--T----TGGCTT------T------GTCT-T-A-TC---GGA-CG------A----CAGACCA---CT-TGAAA-------TAC-GTG-TGCCACAAGGC--TCT----------------G-GT-GCTC-GGACCAAAACT--A-TATCGTATGTTCTCAAAGCCGATCGGT-GA--AATCTGT-CGA-CTTCATGA-CG-TGNAATATCACATA-NATGCAGA-T-GACACGC-A--AATCTACATT--G-TGG--T---------CGAACC----GT-GGA--AAANTGGG--AGGAC-AT--ATCACCAAGACTCAANAATTGTCT-CTC-----TG------AGATCCGTGAATGGATGAGCAT-CAATTTNCTGAAGCTGAA-TCAGGAC-AAGACTGAA-C-TGA-TGGTTTTCG--CTCCGAAACATC--GCGCTAAGAAC--GTAGCT-------GA-ACTA--AGCATCTCGTTCGGAGG-CTGTGTCAT--TCA-CA-A---T-GCTCCGTACGT--A--AAAAAACC-T-----GGGTGCTTATTT-TG-ACAGAA-CCCTTTGC-ATGGAAAANC--AATGCGAC-GCAAT-AACGAGGTCGTG-CT-ACTT-GAACATTCGGG-ATATT-GG--AGTATCCGTCAGTGTATC-TCA-----GAGGTTGCATGT-AAGACG-CTCGT-CA-GNTCACT-TGTAACGTCTCGCCTTGACTACGGAAA-TGC-C-TTCCTCTAC-------GNCGT---TAA-AAACAGCGTCTTTAACA---AAGCTGCAAA-------GTGTACAGAACACCGCNGCTCGACT---TA----TCANTCGAACACGAAA---GTAC---CATATNACNCCGGTATTGAT-CAG-CCTACANTGGCTTCCGGTACAGTTCCGAA-TTCAATACAAANTTCTAGTGCACGCCTNCAAGGCCGCTAAACAGATTTGGCACCTGTATATCTCAAGGGANCTTANCNAGCCGTACNCAAACCCTGCGAGATTATTGCGCTCCGGAATCAANANCATGCTTTTNNAAGTTCCATCGGACCNGNACGAAGNCATATGGAGA
gi|1 : CACGA--TCTTGCTATATACCAC--GAGAT------ATACAAA---GACAA-GTGTCGCC-TTTATAG--TAAATTACTAA--AAACA-AAGC--AGAC-AGGGTTACTT-------CTCT----AGAAAAAG-AACTGAGTGTG-AA-GTGACTCGAAGGCATTGTATGA-TCTGACA-A-C-CG-ACTTCTTGGAAACAATCATAAGCCC-TCTCTACCCA-CCAGTGACTG-TGCCATCGC-TTTGTCC--AACAGCTTTT-CTGAT--T-TTTCACAGGGA-AGATCCAGAC-CATCAGA--GCT---A-TGCT--GCA--TGA-GGCGAACCAAACTAAGTGACTTAGAAA-CTGATTGCTTTGAG-AG-TAGA-TATTAAGTTTCAGTGG-TCA-CACCCTTGATGAGTTTAC--TGCAGCATCG---TGTG-ACGAG-GTGAAAAAA-CTG---C-TCAC--GAGCTCAACAT-CT-A-AGTCCTGTGAAC-TTGA--TT-CCTATCTC-GACTTTCCTGCTTAA-CAGTG-TGTTGACGCCTTCGTTCTG-GTAATCACAACAATAGTT-AAC-A-AATC-A-TTGT-GTGAATCT--GGGTGGTACCGATGA-ATTTCG-AACAGGCAATC-GTCA-GG-CCGC-TGTT---AAGAAGCCG---GGTT----TAGACAAAGAAGTTCTTT-AA--AAC-TATC-ACCCCG-TCTCGAATCTT-CCATTTGTGTCGAAAATTGTTG-AGAAGATTGTTGCAAA--GAGAAT-AGACCGT-------CATT-T--G-A-CTT-TAACTTTCTA-CATGAC-AACTTAC-AATCT-GC---GT-----ATCG--CTCATGTCATTCCACAGA-G--AC--A-A---A-CTT-CTCAGA-GTACA-------TCATG--ACAT--------T-GCGACTGCATTAGACAG-C--AACTGCTGT--ACTGT-CCTTG-T-AAGGTT-AGA-CCTGTCAGCTGCTTT-CGATGTCA--TTGA-TCATCA--CA---TTCT-GTTT-C---A-GC--GCC-TCG-AA-CAC-AC-----TTACGGGA---TAGCA--GGTTCTGCATT-ATCGTGGAT-CAAGTCGTA---CTT---AAG----TG-ACAGGT---CTC-AAC--G---TG-----T----AGCCA--T----TGGCTT------T------GTCT-T-A-TC---TGA-CA------A----CAGACCA---CT-TGAAA-------TAT-GTG-TGCCACAAGGC--TCT------------------GT-GCTT-GGACCAAAACT--A-TATTGTATGTTCTCAAAGCCGATCGGT-GA--AATCTGT-CG--TTTCATGA-CG-TGAAATATCACATA-AATGCAGA-T-GACACGC-A--AATCTACATT--G-TGG--T---------CGAACCA---GT-GGA--AAAATGGG--AGGAC-AT--ATCACCAAGACTCAAGAATTGTCT-CTC-----TG------GGATCCGTGAATGGATGAGCAT-CAATTTACTGAAGCTGAA-TCAGGAC-AAGACTGAA-C-TGA-TGG-ATTCG--CTCCGAAACATC--GCGCTAAAAAC--GTAGCT-------GA-ACTA--AGTATCTCGTTCGGAGA-CTGTGTCAT--TCA-CA-A---T-GCTCCGTACGTAAA--AAAAAACC-T-----GGGTTCTTATTT-TG-ACAGAA-CCCTTTGC-ATGGAAAAAC--AATGCAAC-GCAAT-AAGGAGGTCGTG-CT-ACTT-GAACATTCGGGAATATTGGG--AGTATCCGTCAGTGTATC-TCA-----GAGGTTGCATGT-AAGACG-CTCGT-CA-ACTCTCTGTGTTACATCTCGACTGGACTACAGCAA-CGC-C-TTGATTTAC-------GGCAT---TAACAAGCAGC-----TGACGGATAAGCTGCAGA-------GAGTACAGAACACAGCAGCCCGACT---TA----TTACACGAACACGGAAATCGTAC---CATATAACTACGGTACTGATGCAG--CTACACTGGCTTCCAGTG-AGTTCAGAA-GCCAATACAAACTTTTATTGTACGTCTTCAAGG-CGCTAAACA-ATTTGGCACCTGTATATCTCAAGGGAGCTTATCAAGCCGTACACAAACCCTGCGAGATTATTGCGCT-CGGAATCAAAATCAT-TTTTTTCAAGTTCCATC-GACCCGTACAAAAACATATGGAGA
gi|10 : TAC-AATCC-GT---CT-----ATCGG-CTCAT--CACTCAAC-GA-A--AC--T-GC--A-CTC-CTC-GA-GT-CA-------TTATA--AAAT--------A-TCTAC-ACCCTA-ACAA-G--AACTTC-GTTAACTGT-ACTC--T-CATGCT-TGA-TCT-TCAGCTGCAT--CGACGTTA--TATA-TTACCA--TA---TT-T-ATTT-C---G-GA--GAC-TCG-AA-CAC-AC-----GTTTGCCA---TATCT--GACGC-GCTTT-CT----GAT-CAATTC--A---ATT---GAC----CA-ACAG-T---C-C-AA--------G-----T----AAC-A--T----AGGCTC------GA-----GCCT-T-A-TC---GGA-TG-----------CAGAA-G---CTCTGAAA-------T-C-GGG-TGATCTAAGG---TCG----------------G-AC-CCTC-GGATGA------------CGCATGTTTCCAAACCTAATCGGA-AA--CATCTGTACGAAC--CATCA-CA-TGCAATACCAC-TG-CTTGCAGA-T-GACACTC-A--AATATACATC--G-TGA--T---------AGAGCCCGCTAT-G------ACTTAG--A-GAT-GTTCGTCCCC---TCTTAATAAC--TCT-CAC-----CGGACATCAGATC-----AT-GATGTTTAC-TAATCTTCTGAAGTTGAACCCAAGAT-AAAAC-GAA-T-TAA-C--TTTTT---CTCC
gi|11 : A-CA-A---TAGCCAGGTA-GT--A--AAAAACTT-T-----GGGGGCTTTTTTATG-A---AA-ACCTAAGCGATGGGAAAAC--CATCTGGT-GCAA
gi|16 : ctgtaaatgtattaacaaagccaataggacgaaaaatttgcccgaagaaccaatactatgtcatatcacgttaacagctcgacgacacgcagggtctatttagtaataaaatcgttcagacaactgggtctaaatgtttacaaagagacttcgaagcctgctttatatacagcatatatcagcaccaattggattagtttcatgcaaatatgctagataatgaaccacgacaagacagaagcttattgtgtatcagaccatcgagaaacagcaagccgtaaaCTTT-CGATGTGA--TCGA-TCATTA--GAAGATACC-TTTTAC---ATACTAGTC-TCG-AA--AT-AGAGATGTAAAGGGAAATTAACACTGCCTCTGCTTG-ATCTTGGATACAA-TCATA---TTCTGAAAG----TG-ACAA-T---GTC-AGC------TG-----T----AGCCGTTT----TGGTTTCCGAACT------GTCT-GAA-TCCCAGGA---------A----CTTATCG---AT-CG--G-------TA----G-TTCCGCAAGGG--TCT----------------GTGTGGCTC-GG-CTCGAGTT--G-CCT----TGTTC----AGGCAACCGATAGAATAATATGT--GA-CTTCATGT-CG-TGGACTATCACTTA-GAgtggccaagtactgttataattccagtttagaggaacataggaagaatcagataacctcatcgacgatcggtacatacaaaacataatatctcactgctcttcgctcacatcaagactagactatgctaat
gi|18 : -TGTAATGTCTCGCCTTGACTACGGAAA-TGG-A-CTCCTCTA----------CAT---T-A-AAACAGCGTATTTAACA---AAGCTGCAAA-------acttgtag
gi|2 : CACGAATCCTTGCTATATACCAC--GAGAT------ATACAAA----ACAAAGTGTCGCCATTTATAG--TAA-TT-CTAA--AA-CA-AAGCCAAGACCAGGGTT---T-------CTCT----AGAAAAAG-AACTGAGTGGTGAA-GTGACTCGAAGGCATTGTATGATCCTGACAGA-C-CG--CTTCTTGGAAACAATCATAAGCCCGTCTCTACCCA-CCAGTGACTG-TGCCATCGC-TTTGTCCC-AACAGCTTTTTCTGAT--T-TTTCACAGGGA-AGATCCAGACGCATCAGA--GCT-----TGCT--G-A--TGA-GGCGAACCAAACTAAGTGACTTAGAAA-CTGAATGCTTTGAG-AG-TAGAATATTAAGTTTCAGTG--TCA-CACCCTTGATGAGTTTAC--TGCAGCATCG---TGTG-ACGAG-GTGAAAAAAACTG---C-TCAC--GAGCTCAACAT-CTTA-AGTCCTGTGAAC-TTGA--TTTCCTATCTC-GACTTTCCTGCTTAA-CAGTG-TGTTGACGCCTTCGTTCTG-GTAATCACAACAATAGTT-AAC-A-AATCCA-TTGTTGTGAATCCTGGG-TGGTACCGATGA-ATTTCGAAACAGGC-ATC-GTCA-GG-CCGC-TGTT--TAAGAAGCCG---GGTT----TAGAC-AAGAAGTTCTTT-AA--AAC-TATCAACCCCG-TCTCGAATCTT-CCATTTGTGTCGAAAATTGTTG-AGAAGATTGTTGC-AA--GAGAAT-AGACCGT-------CATT-T--G-ACCTT-TAACTTTCTA-CATGAC-AACTTAC-AATCT-GC---GT-----ATCG--CTCATGTCATTCCACAGAGA--ACAAA-A---A-CTT-CTCAGA-GTACA-------TCATG--ACAT--------T-G-GACTGCATTAGACAG-C--AACTGCTGT--ACTGT-CCTTGATAAAGGTT-AGA--CTGTCAGCTGCTTTCCGATGTCAATTTGA-TCATCAACCA---TTCT-GTTTCC---A-GC--GCCTTCGAAA-CAC-AC-----TTACGGGA---TAGCAG-GGTTCTGCATTAATCGTGGAT-CAAGTCGTA---CTT---AAG----TG-ACA-GT---CTC-AA---G---TG-----TAA--AGCCA--T----TGGCTT------T------GTCT-T-A-TC---TGA-CA------A----CAGACCAG--CT-TGAAA-------TAT-GTG-TGCCAC-AGGC--TCT------------------GT-GCTTGGGACCAAAACT--A-TATTGTATG-TCTCAAAGCCGATCGGT-GA--AATCTGT-CGC-TTTCATGACCG-TGAAATATCACATA-AATGCAGA-T-GACACGCAA--AATCTACATT--GTTGGGTT---------CGAACA----GT-GGA--AAAATGGG--AGGACAAT--ATCACCAAGACTCAAGAATTGTCTCCTC-----TG------GGATCCGTGAATGGATGAGCATCCAATTTACTGAAGCTGAA-TCAGG-C-AAGACTGAA-C-TGA-TGA-TTTCG---TCCGAAACATC--GCG-TAA-AAC--GTAGCT-------GA-ACTA--AGTATCTCGTTCGGAGGACTGTGTCAT--TCAGCA-A---T-GCTCCGTACGTAAA--AAAAAACC-T-----GGGTTCTTATTT-TGAACAGAACCCCTTTGC-ATGGAAAAACCAAATGCAAC-GCAATAAAGGAGGTCGTGTCT-ACTT-GAACATTC-GA-ATATT-GGGAAGTATCCGTCAGTGTATCTTCA-----GAGGTTGCATGT-AAGACGCCTCGT-CA-
gi|20 : TGCCGATGA-ATTTCA-AACAGGCCATC-GTCA-GG-CCGC-TGTT--GAAGAAGCCG---GGTT----a
gi|21 : AT-CAATTTCCTGAAGCTGAA-TCAGGAC-AAG
gi|3 : CACGAGT-CTTGCTATATACCAC--GAGATGAGAATATACAAA---G-CAATGTGTCGCC-TTTATAGAGTAAATTACTAA-----CACAAGC--AGAC-AGA-TTACTTTTCTCTCCTCT----AGAAAATT-A-CTGAGTGTG--A-GTGACTCAAAGGCATT-TATGGGCCTGA-A-A-C-CGGACTTCTTGGAAACA-TCA--AGACT-TCTCTCTCCAGCCAGCGCCTG-TGACA--GC-TTTGTCCGAAACAGATTTT-CTGAAAAT-TTTCACAGGGCCAGATCCAGAC-CATCAG---GCT---A-TGCTT-GCAATTGA-GGCGAACCAATCTAAGTGACTTAGAAA-CTGAT-GCT--GAG-AGGCCGA-TATTAA--TTC-GTGGATCA-CACC-TTG-TGAGTTTAC--TGCAGCATCG---TGTGGACGAG-GTGAAAAAA-CTG---CCTCACTTGAGCTCACCA--CT-A--GTCCTGTGAAC-TTGA--T--CCTATCCC-GACTTTTCTGCTTAAACAGTG-T-TTGACGC-TTCGTTCCGAGTAATCACAACGATAGTT-AAC-AGAATC-A-TTGT-GCGAATCT--GT-TG-TGCCGATGA----TTG-AA-AAGCCATC-GTCA-GG-GCGC-TGTT--GAAGAAGCCG---GGTT----TGGACAAAGAAGTC--TT-AA--AAC-TATC-GCGCGG-TTTCGAATCTT-CCATTTGTGTCGAAA-TTGTTG-AGA-GATTGTT-CAAA--GAGAAT-AGACCATTCACACACATT-TTGG-A-CTT-CAACTT-CT--CATGTC-AA-TTGC-AATCT-GC---GT-----ATCGGCTTCA-GTCATCCTACAGA-AGTAC--A-G---A-CTT-CTCAGA-GTACA-------TCATG--ACAT--------T-GCG-CTGCATTAGACAA-TCTAACTGCTGT--GCTGT-CCT-G-T-AATGTTTAGATCCTGTCAGCTGCTTT-CGATGTCA--TTGA-TCATCA--CA---TTCT-GTTT-C---G-GC--GCC-TCG-AA--ACAAC-----TTACGGGA---TAGCA--G--TTTGCATT--TCGTGGAT-C-AGT-GTA---CTT---AAG----TG--CATAT---CCC-AAT--GGT-TG-----T----AGCCA--T----TGGC-T------T------G--T-T-ATTC---GGC-CG------------AGA-CA---CT-TGAAA-------TACGGTG-TGCCACAAGGC--TCTTGAGGGGGGGGGGGGGG-GT-GCTT-AGACC-AAACTAAA-TATCGTATGTTCTCAAAG-CGATCGGT-GAT-AATCTGT-CGA-CTTC-TGA-AA-TGCAATATCACATA-TATGGCGA-TAGACACGG-C--AATCTAC-TT--G-TGG--T---------CGAA-C----AT-GGA--AAATTGGG--AGGAC-AT--ATCACCAAGACTCAATAATTGTCT-CTC-----TG------AGATCCGTG--TGGATGAGCAT-CAATTTCCTGAAGCTGAA-TCAGGAC-AAGACTGAATC-TGA-TGGTTTTCG--CTCCGAAACATC--GC-CTAAGGAC--GTAGCT--------A-ACT---AGCATCTCGTTCGGAGG-CTGTGTCTTCATCA-CG-A---T-GCTCCGTACGT-----AAAAAACC-T-----GGGTGCTT-TTT-TG-ACAGAA-CC--TTGC-ATGGAAAACC--AATGC-AC-GC-AT-AACG-GGTCGTG-CT-ACTTGGAACATTCGGG-ATATT-GG--CGTATCCGT-AGTGTATC-TCT-----GAGGTGGCCAGT-AAGACG-CTCGT-CA-
gi|4 : gCACGAGTTCTT-CTATATACCAC--GAGAT------ATACAAA---GACAATGTGTCGCC-TTTATAGAGTAAATTACTTA--ACACA-A-GC--AGAC-AGGATTACTT-------TTCTTTCTAGAAAAAT-TACTGAGTGTGGAA-GTGACTCAAAGGCATTGTATGG-CCTGAAA-A-C-CG-ACTTCTTGGAAACAATCA--AGACC-TCTCT-CCTAGCCAGCGACTG-TGACATAGC-TTTGTCC--AACAGATTTT-CTGAAA-T-TTTCACAGGGA-AGATCCAGAC-CATCAGG--GCT---AATGCTT-GCA--TGA-GGCGAACCAA-CTAAGTGACTTAGAAAACTGAT-GCTTTGAG-AG-CAGA-TATTAAGTT-CAGTGG-TCA-CACC-TTGATGAGTTTAC--TGCAGCATCG---TGTG-ACGAG-GTGAAAAAA-CTG---C-TCACT-GAGCTCACCA--CT-A-AGTCCTGTGAACCTTGA--T--CCTATCCC-GACTTTTCTGCTTAAACAGTG-T-TTGACGC-TTCGTTCCGAGTAATCACAACGATAGTT-AAC-A-AATC-A-TTGT-GCGAATCT--GT-TG-TGCCGATGA-ATT--A-AACAGGCCATC-GTCA-GGGCCGC-TGTT--GAAGAAGCCG---GGTT----TGGACAAAGAAGTC--TT-AA--AAC-TATC-GCGCAG-TTTCGAATCTT-CCATTTGTGTCGAAA-TTGTTG-AGAGAGTTGTT-CAAA--GAGAAT-AGACCAT-------CATT-T--GGA-CTT-CAACTTTCTA-CATG-C-AA-TTGC-AATCT-GC---GT-----ATCG--CTCATGTCATCCTACAGA-AGTAC--A-G---A-CTT-CTCAGA-GTACA-------TCATG--ACAT--------TTGCGACTGCATTAGACAATC--AACTGCTGT--GCTGT-CCTTG-T-AATGTTTAGA-CCTGTCAGCTGCTTT-CGATGTCA--TTGA-TCATCA--CA---TTCT-GTTT-C---G-GC--GCC-TCG-AAACA--AC-----TTACGGGA---TAGCA--GGTT-TGCATT--TCGTGGAT-CAAGTCGTA---CTT---AAG----TG-ACATAT---CTC-AAT--G---TG-----T----AGCCA--T----TGGCTT-------------GTTT-T----C---GGC-CG------A------GAC-A---CT-TGAAA-------TAG-GTG-TGCCACAAGGC--TCTT---------------G-GT-GCTT-AGACCAAAACT--AATAT-GTATGTTCTCAAAGCCGATCGGT-GAT-AATCTGT-CGA-CTTCATGA-AA-TG-AATATCACATA-TATGCAGA-T-GACACGC-A--AATCTACATT--G-TGG--T---------CGAAC-----AT-GGA--AAATTGGG--AGGAC-AT--ATCACCAAGACTCAATAATTGTCT-CTC-----TG------AGATCCGTGAATGGATGAGCAT-CAATTTCCTGAAGCTGAA-TCAGGAC-AAGAC-GAA-C-TGA-TGGTTTTCG--CTCCGAAACATC--GCGCTAAGGAC--GTAGCT-------GA-ACTA--AGCATCTCGTTCGGAGG-CTGTGTCAT--TCA-CAGA---T-GCTCCGTACGT-----AAAAAACC-T-----GGGTGCTTATTT-TG-ACAGAA--CCTTTGC-ATGGAAAACC--AATGC-AC-GC-AT-AACGAGGTCGTG-CTAACTT-GAACATTCGGA---ATT-GG--CGTATCCGT-AGTGTATC-TCT-----GAGGTTGCAGGTAAAGACG-CTCGT-CA-a
gi|5 : gCACGAGT-CTTGCTATATACCACACGAGAT------ATACAAAAAGGACAA-GTGTCGCC-TTTATAGA---AATTAC-AATCAAA-A-AAAC--AGAC-AGA-TTACTT-------CTCT----AGAAAAAATAACTGAGTGTGGAAAGTGACTCGAAGGCATGATATGG-CCTGACA-A-AACG-ACTTCTTGGAAACAGTCAAGAGCCC-TCTCTAACC--CCAGTGACTGTTGACATCGCATTTGTCC--CATAA--------GATA-TGTTTCACCAGGA-AGATCCAGAC-CATCAGAGGGCTATAA-TGCTGAGCA--TGAGGGCGAACCAA--TACGTGACTCAGAAA--TGA-TGCTTTGAGAAG-CAGA-TATTAA-TTACAGTGG-TCAGCACCCTTGATGAGTTTACTTTGCAGCATCGAGATGTG-ACGAG-GTGAAAAAA-ACGAGAC-TCAC--G-GCTCATCATACT-ATAGTCCTGTGACA-TTGAATTC-CCTATCCCGGACTTTCCTGCTTAGACAGTGATGTTG------TTGTT---GGTAATCACAACGATAGTTAAACAA-AATC-ATTTGT-GCGAATCTA-AA-TGGTACCGATGAGATTTCA-AACA-GCAATCAGTCAGGG-CCGCTTGTTGAGAAGAAGCCGAGAGGTTTGTGTGGAC-AAGAAGTTCTTT-AATTTACGTATC-GCCACGTTTTCGAATCTTACCA-TTGT-TCGAAAATTGTTGAAGAAGATTGTTGCAAAAGGAGAAT-A-----TTTA----CATTATG-G-A-CTTGCAACTTTCTACCATGACAAACTTGCAAATCT-GCTTTGTTCTNNNNNN--NNNNNNNNNNNNNNNNNN-N--GC--ATGTC-A-TTT-TACAGA-G-ACAGCACTTCTCATAGTACATCATGACATT-GCGACTGCATTAGACAA-C--AACTGCTGT--GCTGT-CCTTG-T-AATGTT-AGA-CCTGTCAGCTGCTTT-CGATGTCA--TTGA-TCATGA--CA---TTCT-GTTT-C---G-GC--GCC-TCG-AA-CTC-AC-----TTACGGGA---TAGCA--GGTTCTGCATT-ATCGa
gi|6 : aatagtaggacatattgataaaacacatgagggacaacagataactatcttgcaggcaagtccccggtgtcagatagtcagtacttgtgtgactataaggagtatgtcctcctcaggatcataaatgggaatttacactttactgccaaatttctacgatttcgacgcaacacaaaacgggtttccttcaggaattacgcaatatcataacttaacgaatttaataaagatacattgaaaaacgtcaactgcagctgtatcagcagtaaatacaggttgacatctcgtcaaaattctaaataagaatgcgcgcagaggtctttggacaagcattgcttttttacaatcaaaagagatcgtcctgcggaccgaactctccatgggtactcggatgaattgcgagaaagccaaacgcgacatgacgaaaaaccggaagcgtgagtggacaCACGA--TCTTGCTATATACCAC--GAG-T------ATACAAA---GACAA-GTGTCGCC-TTTATAG--TAAATTACTAA--AA-CA-AAGC--AGAC-AGGGTTACT--------CTCT----AGAAAAAG-AACTGAGTGTG-AA-GTGACTCGAAGGCAA-GTATGA-TCTGACA-AAC-CA-GCTTCTTGGAAACAATCATGAGCCC-TCTCTACCCA-CCAGTGACTG-TGCCATCGC-TTTGTCC--AACAGCTTTT-CTGAAT-T-TTTCACAGGGA-AGATCCAGAC-CATCAGA---CT---A-TGCT--GCA--TGA-GGCGAACCAAACTAAGTGACTTAGAAA-CTGATTGCTTTGAG-AG-TAGA-TATTAAGTTTCAGTGG-TCA-CACCCTTGATGGATTTAC--TGCAGCATCG---TGTG-ACGAGTGTG-AAAAA-CTG---C-TCAC--GAGCTCAACAT-CT-A-AGTCCTGTGAAC-TTGA--TT-CCTATCCT-GACTTTCCTGCTTAAACAGTGTTGTTGACGCC-TCGTTCTG-GT-ATCACAACAATAGTT-AAC-A-AATC-A-TTGT-GTGAATCT--G--TGGTACCGATGA-ATTTCG-AACAGGCAATC-GTCA-GG-CCGC-TGTT--TAAGAAGCCG---GGTT----TAGACAAAGAAGTTCTTTAAA--AAC-TAT--ACCCCG-TCTCGAATCTT-CC-TT--TGTCGAAAATTGTTG-AGAAG-TTGTTGCAA----AGAATAAGACCGT-------CATT-T--G-A-CTT-TAACTTTCTA-CATGAC-AACTTAC-AATCT-GC---GT-----ATCG--CTCATGTCATTCCACAGA-G--AC--A-AAACA-CTT-CTCAGA-GTACA-------TCATG--ACAT--------T-GCGACTGCATTAGACAG-C--AACTGCTGT--ACTGT-CCTTG-T-AAGGTT-AGA-CCTGTCAGCTGCTTT-CGATGTCA--TTGT-TCATTA--CA---TTCT-GTTT-C---A-GC--GCC-TCG-AA-CAC-AC-----TTACGGGA---TAGCA--GGTTCTGCATT-ATCGTGGAT-CAAGTCGTA---CTT---AAGGAGCTGCACAGGTATCCTCAAAC--GCTCTGACCGATGATAAGCCA--TGGACTAGCTT------T------GTCTCT-ACTCT--AGACCGAGATATA----CAGACTC---CT-TAAAATAAAGACTAT-GTGTTGCCACAAAGCTGTCTA---------------G-GT-GCT
gi|7 : ggcgACGTGC-AATCTTGC---AT-----ATCG--CGCTTGTCACTCTACCGA-A--AC--T-G---CTCTTACTTACATGTTCA-------TCACG--ACAT--------T-GTGTCTGCATTAGACGG-A--AATTCTTGT--A-TGTCCCTTG-T-GATGCT-CGA-CCTTTCTGCCGCCTT-TGATGTGA--TAGATTCACAA--CA---TTCTCATCT-CATTG-G--------CG-A--------------TATGGAA---TATCT--GGATCAGCATT-GGCATGGTT-TAGATCATATCTCCT----GG----TC-GCAG------TC-AGCAGG---TT-----T-----GCAA--T----TGGTTT------TAAAACAGTTT-----TC---AG--CG------ATGTTCAGGCTATGTTT-TG--------------GCG-TTTCCCAGGGC--TCT----------------GTGT-G----GGACCACGTCT--T-TACTGCATGTTTTCTAAACC-ATTGGT-GA--AATATGC-CGA-CGTCATTA-CATTGTGCTATCAC-TGTTATGCCGACT-GACACGC-AGGAA--TATATG--G-TTA--TAAAACCTAACGAACC----CT-GAACCAGAATTGC--A-GAC------------AGACTTCAAAAGTGCCT-CTCAAATATA------AGCCCC-----TGGATGAA-GT-CAA-ATACTAAAACTAAA-TCAGGACAAAAACTGAA-CTTGATTCATTTTTG--CTCCCAAAAA----G----AAGATCTTGTGACTTCTTTTAGA-TTTGTCAAC-TCACATTTGGAGG-ATCGATCAT--T-A-CA-AG--T-GTGTCGTGCGT--T--AAAAAACCTT-----TGGTGTTTTCTT-TG-ATAAGA-TCTAT--C-ATGGAacattgatccaaaaaata
gi|7 : TCAT-CA-GATCACT-TGTAATGTCTCGCCTTGACTACGGAAAATGC-CACTCCTCTACTCTGTTAACCGT---TAA-AAACAGCGTCTTTAACA---AAGCTGCAAA-------ATGTAC-GAACA-CGCTGCTCGACtttcccaataaaacatctagtcaaactgtgctactcccaacttaaaaacatcgatagaattagtaactgtccaacaatcatcagatcacttgtaatgtctcgccttgactacggaaaatgccactcctctactctgttaaccgttaaaaacagcgtctttaacaaagctgcaaaatgtacgaacacgctgctcgac
gi|8 : acgtgcaatcttgcatatcgcgcttgtcactctaccgaaactgctcttacttacatgttcatcacgacattgtgtctgcattagacggaaattcttgtatgtcccttgtgatgctcgacctttctgccgcctttgatgtgatagattcacaacattctcatctcattggcgatatggaatatctggatcagcattggcatggtttagatcatatctcctggtcgcagtcagcaggtttgcaattggttttaaaacagttttcagcgatgttcaggctatgttttggcgtttcccagggctctgtgtgggaccacgtctttactgcatgttttctaaaccattggtgaaatatgccgacgtcattacattgtgctatcactgttatgccgactgacacgcaggaatatatggttataaaacctaacgaaccctgaaccagaattgcagacagacttcaaaagtgcctctcaaatataagcccctggatgaagtcaaatactaaaactaaatcaggacaaaaactgaacttgattcatttttgctcccaaaaagaagatcttgtgacttcttttagatttgtcaactcacatttggaggatcgatcattacaagtgtgtcgtgcgttaaaaaacctttggtgttttctttgataagatctatcatggatttcccaataaaacatctagtcaaactgtgctactcccaacttaaaaacatcgatagaattagtaactgtccaacaaGCTGA-C-GACACGC-A--GGTC--CATTTAG-TGA--T---------AAAACC----GTTAGA--CAACTGGACTAAGTT--T--AT-AGAAAGACTCGAAGCCTGTTT-AGC-------------AGAT----------ATCAGCA---AATATGCTGAAATTGAA-CCATGAC-AAGGCAGAG-T-TGA-TAGTTTTCGGACCTCGAAACAGCAAGCGTTA----C--CTAGCT-------AATACCA---GCATTACTTTCGATGG-ATTTGTCAT--T----A-AGTCT-GTTCCG---GT--ATTCAAAAACT-TAGGGGGGGGGGGTATTT-TG-ACGAAA-ATCTTAGC-ATGAGATACC--A-TTTGTCTGCAAT-GGCTAAGTTTTG-TT-ATTT-------CCAG-----TT-G---AGTAAC-------ATACC-TCATCGACGATGATACATGC-AAAACA-TTAATACATGCTC--T-CGTCACATCAAGGCTAGACTATGCTGA-TGC-A-TTGTTATAT-------GGCCTATCTAA----CAGTGC---TAACA---A-----CAAATTAGTACGTGTACAAAATACCACAGCAAGGAT---GA----TCAGTCGCACTAAAAA---GTATGATCATATTACACCGGTATTGA--CAGACCTTCATTGGCTTCCGGTACAGTATTGTA-TTCAATTCAAAGTTCTTGTGCATGCCTACAAGGCCGTT---CAGATTTGG-ACCTA-----CTC-----ACCTTAGCTAACTG-ACTC-AACC--------TTATT---CTCCAGAA--AACAGTATGCTTTTGAAAGTTCC-TCGGACTAGAACGAAGTCATATGGAAA
gi|9 : CGTGT-CGAACA-ATCTT-CA-GGTCACT-TGTAATGTCTCGCCTTGACTACGGAAA-TGCAC-TTCCTCTAC-------TCTGT---T-A-AAACAGCGTCTTTAACA---AAGC-ACAAAC------ATGTACAGAACACTGCTGCTCGACTATGTACCGCTCCTTCAAACACGA------------CATATCACCCCATT-TTAAT-CTC-TCTACAATGGCTACTGTTAC--TTCCGAATTTCAGTACAAAATCCTAGTcagacgcttgactattttgcgccaataatgtggatcgcctaaccatcaggattatattgtgccaaatcactggat
blockSeqs : ATC AC GAGAAT AAG A A AG TCAAA C CA C G TTCTCTC TTCT AT G A TG T C G AA GA A TA G A G T C A GA C T AAA G C G AGG ATAA GA AT G A A AT A G A G T A G C TT AGA G T A AGA C TT A TA T T C ATTC G A A G CT T A A A G C T T TGGG G G A C A G G T GAG AGA TGTG A C A TT G A T A A A A A G AG A TCACACA A TG G C G C A A C A T TTT TCTNN GC A AGT ATGTC T A T GCACTTC GT CATGACAT T TCT TA C A A T T C AT T AC AGA C A ATTG TA T A CAC AGATG AAT CT AA A T TCT TGA GAGC C GGTATC A CGCTCTGACCGATGATA TT GGAC TGTCTCTACTCTAGACCGAGATATACAGACTC C A TAAAGACTAT T TG TGAGGGGGGGGGGGGGG G TG CG AAATATC A A AT A AA T CCG C T TT A C A AGG TA T GT AAAACCTAA CCGCTA T CC C CT G GTTC A T C CGGACATC CGTGAA C T C A T TC T GGT GA T AA GC G TT TCTTTTAG T GTC A CA CAG G GTC A AAA T AGGGG T A A CC A G A CA G T A A T A G G AAT . GAA C T ATCGAC A C A T A A . A T A A CA CTCTGTTAACCGTTA A ATT . T TTAGTAC A CC T T ATGTACCGC G AAGTATGAT T A A CAGAC T CA T T G A C . G . . . C G T . T . . . C . C G G GA . G A A T
blockSeqs : GTT . . . T . AG ACA . . . A . . G G . TG G A . AC A A AG . C G . A . C A . AA . . . A AA T . . T . TT . . . G T . . C . . . . . . . T C T . . . TTT . A T G T C A . . . . . . AAA G . . C . . . . T . . A C . . . . . . A . G A G . . TTA . G . . . . T . C . . . . G A AGT AAAAC . . . . . . . TC . . . . T . . . . . . . C AT . . . CAC . . G C . G . . . . TAT . TGGTTGT . . TAAAACAGTTTTCAGCGATGTTCAGGCTATGT . A TACG . . GT . C AA ATATT A . T . A T CAT G A C A . . AA . . . . AG . . A . G AAT A G . AAATATA CGTGAA . A . . T CT . GGT . T . GT G . G . A . . CA . G . ATT . . A . . A T . A . A . A . . . . G GAT . C . . A . . . . C A . A T A . AC TGGCCTATCTA A CTT . T C A CT A A GA T . C C . TCTCT A C C . A
blockSeqs : GT . . . T . A AA . . . G . . T G . GA . C . C A G TG . A . . A . . A . TA . . . G A T . . A . T . . . G A . . C . . . . . . . . C T . . . TT . A . G T C G . . . . . . GT G . . C . . . . G . . A C . . . . . . A . A G G . . . . . . . . . A . C . . . . . A GA AAAA . . . . . . . G . . . . . . . . . . . . . G . . . ACA . . . A . G . . . . TAT . CAGGTTT . . CCGAACTGTCTGAATCCCAGGAACTTATCG . A TAT . . TG . C AA AATAT G . T . C T CA A A G C . . A . . . . CA . . T . G AT A T . TG CGTG . C . . T T . CAT . T . G G . G . A . . CA . . . A . . A . . C T . C . G . A . . . . A A . C . . T . . . . G . . C A T . A CTCTGTT A CTT . . . . C T T
blockSeqs : GT . . . . . . AA . . . . . . T . . T . C . C G A . . A . . A . . C . AT . . . A A . . . . . T . . . . T . . . . . . . . . . . T . . . . T . A . . C T . . . . . . . GT . . . A . . . . G . . . . . . . . . . . . A A . . . . . . . . . . A . C . . . . . N A TGC . . . . . . . C . . . . . . . . . . . . . A . . . ACA . . . A . G . . . . GT . GTGTAA . . TGTCTTATCTGACAACAGACCAG . A TAG . . AG . T AC TTACT G . . . A T CG C A A A . . C . . . . CC . . T . A AT A T . TG A . C . . A C . AGT . G . C . . A . A . . A . . . T . . T . . T T . C . . . . . . . . . . . A . . T . . . . . A T A . A CATT . . . . .
blockSeqs : T . . . . . . . . . . . . . G . . G . . . C . . . . . . . C . . . . T . . . . . . . . . . T . . . . . . . . . . . . . . . . A . . . . T . . . . . . . . . . . . . G . . . A . . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A N AG . . . . . . . C . . . . . . . . . . . . . G . . . CTC . . . A . G . . . . AT . TGTGT . . GAGCCTTATCGGATGCAGAAG . A TC . . GT . T A GCCT G . . . A G AA T . T C . . A . . . . CG . . A . . T . A . TG C . C . . . C . GA . . . . . . . . . . . . . . . . . . A . . A A . C . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . . C G AG . . . . . . . C . . . . . . . . . . . . . G . . . CAC . . . G . A . . . . GT . CTGT . . TGTTATTCGGCCGAGACA . . TA . . G . . A C . . . . A . AA . . T T . . A . . . . A . . C . . . . A . . . . A . . . T . T . . . . . . . . . . . . . . .
blockSeqs : . . . . . . A TG . . . . . . . A . . . . . . . . . . . . . G . . . AT . . . . . . . . . . G . GT . . GTTTTCGGCCGAGACA . . . . . . . . G . .
blockSeqs : . . . . . . . A . . . . . . . .
blockSeqCons : GT* A* AA*** AA* T* TT*** T* GN*** G** GT**** CGTGT************** TAC******** GN**************** A* CG**** GGT G*** A** CTTNTT************ A* CTT ***
originalCons : CACGAGTTCTTGCTATATACCAC--GAGAT------ATACAAA---GACAA-GTGTCGCC-TTTATAGA-TAAATTACTAA--AAACA-AAGC--AGAC-AGGGTTACTT-------CTCT----AGAAAAAG-AACTGAGTGTGGAA-GTGACTCGAAGGCATTGTATGG-CCTGACA-A-C-CG-ACTTCTTGGAAACAATCATGAGCCC-TCTCTACCCA-CCAGCGACTG-TGNCATCGC-TTTGTCC--AACAGCTTTT-CTGANA-T-TTTCACAGGGA-AGATCCAGAC-CATCAGA--GCT---A-TGCT--GCA--TGA-GGCGAACCAAACTAAGTGACTTAGAAA-CTGATTGCTTTGAG-AG-CAGA-TATTAAGTTTCAGTGG-TCA-CACCCTTGATGAGTTTAC--TGCAGCATCG---TGTG-ACGAG-GTGAAAAAA-CTG---C-TCAC--GAGCTCANCAT-CT-A-AGTCCTGTGAAC-TTGA--TT-CCTATCCC-GACTTTCCTGCTTAAACAGTG-TGTTGACGCCTTCGTTCCGAGTAATCACAACGATAGTT-AAC-A-AATC-A-TTGT-GCGAATCT--GN-TGGTGCCGATGA-ATTTCG-AACAGGCNATC-GTCA-GG-CCGC-TGTT--GAAGAAGCCG---GGTT----TGGACAAAGAAGTTCTTT-AA--AAC-TATC-GCCCCG-TCTCGAATCTT-CCATTTGTGTCGAAAATTGTTG-AGAAGATTGTTGCAAA--GAGAAT-AGACCGT-------CATT-T--G-A-CTT-CAACTTTCTA-CATGAC-AACTTGC-AATCT-GC---GT-----ATCG--CTCATGTCATTCCACAGA-A--AC--A-G---A-CTT-CTCAGA-GTACA-------TCATG--ACAT--------T-GCGACTGCATTAGACAG-C--AACTGCTGT--ACTGT-CCTTG-T-AATGTT-AGA-CCTGTCAGCTGCTTT-CGATGTCA--TTGA-TCATCA--CA---TTCT-GTTT-C---G-GC--GCC-TCG-AA-CAC-AC-----TTACGGGA---TAGCA--GGTTCTGCATT-ATCGTGGAT-CAAGTCGTA---CTT---AAG----TG-ACAGGT---CTC-AAC--G---TG-----T----AGCCA--T----TGGCTT------T------GTCT-T-A-TC---GGA-CG------A----CAGACCA---CT-TGAAA-------TAC-GTG-TGCCACAAGGC--TCT----------------G-GT-GCTC-GGACCAAAACT--A-TATCGTATGTTCTCAAAGCCGATCGGT-GA--AATCTGT-CGA-CTTCATGA-CG-TGNAATATCACATA-NATGCAGA-T-GACACGC-A--AATCTACATT--G-TGG--T---------CGAACC----GT-GGA--AAANTGGG--AGGAC-AT--ATCACCAAGACTCAANAATTGTCT-CTC-----TG------AGATCCGTGAATGGATGAGCAT-CAATTTNCTGAAGCTGAA-TCAGGAC-AAGACTGAA-C-TGA-TGGTTTTCG--CTCCGAAACATC--GCGCTAAGAAC--GTAGCT-------GA-ACTA--AGCATCTCGTTCGGAGG-CTGTGTCAT--TCA-CA-A---T-GCTCCGTACGT--A--AAAAAACC-T-----GGGTGCTTATTT-TG-ACAGAA-CCCTTTGC-ATGGAAAANC--AATGCGAC-GCAAT-AACGAGGTCGTG-CT-ACTT-GAACATTCGGG-ATATT-GG--AGTATCCGTCAGTGTATC-TCA-----GAGGTTGCATGT-AAGACG-CTCGT-CA-GNTCACT-TGTAACGTCTCGCCTTGACTACGGAAA-TGC-C-TTCCTCTAC-------GNCGT---TAA-AAACAGCGTCTTTAACA---AAGCTGCAAA-------GTGTACAGAACACCGCNGCTCGACT---TA----TCANTCGAACACGAAA---GTAC---CATATNACNCCGGTATTGAT-CAG-CCTACANTGGCTTCCGGTACAGTTCCGAA-TTCAATACAAANTTCTAGTGCACGCCTNCAAGGCCGCTAAACAGATTTGGCACCTGTATATCTCAAGGGANCTTANCNAGCCGTACNCAAACCCTGCGAGATTATTGCGCTCCGGAATCAANANCATGCTTTTNNAAGTTCCATCGGACCNGNACGAAGNCATATGGAGA
finalCons : CACGAGT-CTTGCTATATACCAC--GAGAT------ATACAAA---GACAA-GTGTCGCC-TTTATAGA-TAAATTACTAAAA---CA-AAGC--AGAC-AGGGTTACTT-------CTCT----AGAAAAAG-AACTGAGTGTGGAA-GTGACTCGAAGGCATTGTATGG-CCTGACA-A-C-CG-ACTTCTTGGAAACAATCATGAGCCC-TCTCTACCCA-CCAGCGACTG-TGNCATCGC-TTTGTCC--AACAGCTTTT-CTGAAA-T-TTTCACAGGGA-AGATCCAGAC-CATCAGA--GCT---A-TGCT--GCA--TGA-GGCGAACCAAACTAAGTGACTTAGAAA-CTGAT-GCTTTGAG-AG-CAGA-TATTAAGTTTCAGTGG-TCA-CACCCTTGATGAGTTTAC--TGCAGCATCG---TGTG-ACGAG-GTGAAAAAA-CTG---C-TCAC--GAGCTCANCAT-CT-A-AGTCCTGTGAAC-TTGATT---CCTATCCC-GACTTTCCTGCTTAAACAGTG-TGTTGACGCT-TCGTTCCGAGTAATCACAACGATAGTT-AAC-A-AATC-A-TTGT-GCGAATCTGN---TGGTGCCGATGA-ATTTCG-AACAGGCNATC-GTCA-GG-CCGC-TGTTG--AAGAAGCCG---GGTT----TGGACAAAGAAGTTCTTT-AA--AAC-TATC-GCCCCG-TCTCGAATCTT-CCATTTGTGTCGAAAATTGTTG-AGAAGATTGTTGCAAA--GAGAAT-AGACCGT-------CATT-T--G-A-CTT-CAACTTTCTA-CATGAC-AACTTGC-AATCT-GC---GT-----ATCG--CTCATGTCATTCCACAGA-A--AC--A-G---A-CTT-CTCAGA-GTACA-------TCATG--ACAT--------T-GCGACTGCATTAGACAG-C--AACTGCTGT--ACTGT-CCTTG-T-AATGTT-AGA-CCTGTCAGCTGCTTT-CGATGTCA--TTGA-TCATCA--CA---TTCT-GTTT-C---G-GC--GCC-TCG-AA-CAC-AC-----TTACGGGA---TAGCA--GGTTCTGCATT-ATCGTGGAT-CAAGTCGTA---CTT---AAG----TG-ACAGT----CTC-AACGTGT--------------AGCCA--T----TGGCTT------T------GTCT-T-A-TC---GGA-CG------A----CAGACCA---CT-TGAAATAC--------GTG-TGCCACAAGGC--TCTGN----------------GT-GCTC-GGACCAAAACT--A-TATCGTATGTTCTCAAAGCCGATCGGT-GA--AATCTGT-CGA-CTTCATGA-CG-TGNAATATCACATA-NATGCAGA-T-GACACGC-A--AATCTACATT--G-TGG--T---------CGAACCG----T-GGA--AAANTGGG--AGGAC-AT--ATCACCAAGACTCAANAATTGTCT-CTC-----TG------AGATCCGTGAATGGATGAGCAT-CAATTTNCTGAAGCTGAA-TCAGGAC-AAGACTGAA-C-TGA-TGGTTTTCG--CTCCGAAACATC--GCGCTAAGAAC--GTAGCT-------GA-ACTA--AGCATCTCGTTCGGAGG-CTGTGTCAT--TCA-CA-A---T-GCTCCGTACGT--A--AAAAAACC-T-----GGGTGCTTATTT-TG-ACAGAA-CCCTTTGC-ATGGAAAANC--AATGCGAC-GCAAT-AACGAGGTCGTG-CT-ACTT-GAACATTCGGG---ATT-GG--AGTATCCGTCAGTGTATC-TCA-----GAGGTTGCATGT-AAGACG-CTCGT-CA-GNTCACT-TGTAACGTCTCGCCTTGACTACGGAAA-TGCA--TTCCTCTACTTNTT------------AA-AACAGCGTCTTTAACA---AAGCTGCAAA-------GTGTACAGAACACCGCNGCTCGACT---TA----TCANTCGAACACGAAA---GTAC---CATATNACNCCGGTATTGAT-CAG-CCTACANTGGCTTCCGGTACAGTTCCGAA-TTCAATACAAANTTCTAGTGCACGCCTNCAAGGCCGCTAAACAGATTTGGCACCTGTATATCTCAAGGGANCTTANCNAGCCGTACNCAAACCCTGCGAGATTATTGCGCTCCGGAATCAANANCATGCTTTTNNAAGTTCCATCGGACCNGNACGAAGNCATATGGAGA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ATAGCGGGACATATGTCCCGGGACATAAGTCCCGGACTACAATACACCCACCCCTATGTTGCAGGCAGTCCCGCGTGTCCGATAGTCCAGTACTTGTGGTGACCTCAAGGGTATGTCCTCGTTGCTCAGTCATATGGGAATTTACACTTTAACTGCAAATATCTACGATTTCGACGCAACACAACGGTTTCCTTCAGAAATTCAACGCAATGTCTCTTAACGAATTTCAATAAAGATATTGACGTCAAACTTGCGATGTATCGCAGTGATATACAGTTGGACATTTTTGTTGAAATTATATAGATAGAATGCGCGCGAGGTCCCTTGAAACAAGCATGCTGCTTTAGCAGTCAAAAGAGATCGTCCTGCGGCCGAACTTCTCCGTGGTTACTCGATGCTTTGGCGACAGACGGAAATCCGAGCGTGAGTGGAGGCCG
Unaligned ( gi|13 ): CAATCGCGGGACATATGTCCGGGACATAAGTCCCGGACTACAAATACACCCACCCCATGTTGCAGGCAGTCCCGCGTGTCCGATAGTCAGTACTTGTGTGAATCTCAGGTAGTTGTCCTCCTCAGATCATATGGGAATTTCAACTTTACTGCAAATATCTACGATTTCGACGCAACACAAAACGGTTTCCTTCAGGAAATTACGCAATGTCTAACTTAACGATTTCATAAAGATATTGAAACGTCAACTGCGATGTATCCGCAGTGAATACAGTTGGACATTTTGTTGAATATAATAAGAATGCGCGCGAGGTCTTGAACAAGCATGCTGCTTTACAGTCAAAAGAGATCGTCCTGCGCGGCCATCTCCGTGGTTACTCGACTGAATTGCGACAGACGGAAATCCGAGCGTGAGTGG
Unaligned ( gi|14 ): TATGTTGCAGGCAGTCCCGCGTGTCGATAGTCAGTACTTGTGGTGACTCTCAGGGTATGTCCTCCTCAGATCATATGGGAATTTACACTTTACTGCAAATATCTACGATTTCGACGCAACAACAAACGGTTTCCTTCAGGAAATTACGCAATGTCTAACTTAACGAATTTCAATAAAGATATTGAAACGTCAACTGCAGATGTATCCGCAGTGAATACAGTTGGACATTTTGTTGAATTATATAATAAGAATGCGCGCGAGGTCTTGAAACAAGCATGCTGCTTTACAGTCAAAAGAGATCGTCCTGCGGCCGAACTCTCCGTGGTTACTCGACTGATTGGCGACAGACGGAAATCCGAGCGTGAGTGGAGCCG
Unaligned ( gi|15 ): TCTTGCGAACTAGAAGTCCAATTCCAAACAAATCTGCTTAAGCAATGTTTGAACTCTGTGCTTCCTATTGATACGAAATCATAAACAGATCATTTTCAAAACTCAACAGGACGCACCCTCGTTGTAAGAATGCTAATGTTCGACCACTTATCAAGCGACCAATGGCTAGACAAAGACGAATGTAAGAAATTATGCGTCCGGTATCCGAATTACCGTTCTGAGGCTAAAAGTCCTTGAAAAGCCGGTAGCATCGCGATTGGACAAACACACCGCGATTATAAATGATCTGCAACG
Unaligned ( gi|17 ): TGGGGGCTTATTTTGGATGAAACTAAGCATGGAAAACATCTGTCTGCACTCTGAGTGGCCAAGTCTTGTTATTTTCCAGTTGAGGAACATAGGAAGAATCAGATACTGCCACCTATGAACTCGTTTTAACAAAACTTGAT
Unaligned ( gi|19 ): CCACGTGCAACTGCATATCACGCTTGTCACTCTACCAAACTGCTATACTACGTGTTCATCACGAGA
Alignments
lowQualScore : 111111 111 2 22 2222222 1111 1 1 11 1 11 222 111 11111 22 1 1 111 111 11 11 11111 11 1 1 22222 111 111 1111 3333333 11 11111 11 1111 22222222222 1111111 11111111 1111 1 11111 11 11 1111 222222 3333333333333333333 1111 555555555555555555555555555555555555555555555555555555 22222222222 44444444444444444 22222 1 11 222222222 111111 11111 2222222222222 111111 22222222 111 111 33333 11111 11 1 3333 111 1 222222 55555555555555555555555 111 111 3333333 444444444 555555555555 3333333 11 1 1 222 1 1 22222 22222 1 1 33333333 222 1 11 1 1 1
lowQualScore : 9 6 99 999999 111 0 6 88 99 6 6 7 99 6 9 1111111 4444 77 5 6 44 3 2 6 777 88 1 55 6 3 3 0 6 1 6 55 6 6 222 6 6 6 000 77777 22 99 6 1 6 6 3 6 6 6 6 3 6 6 6 99 111 6 6 6 111 6 55 1 44 6 6 6 66666 6 7 6 33 3 2 8 6 6 6 6 6 6 22222 6 5 5 6 5 5 5 5 222 000 2222 7 6 99 6 6 6 6 6 3 7 6 1 1 6 99 6 3333333 6 55 6 6 6 6 3 6 4 5 5 888 22222 11 0 1 4444 55555555555 5 5 0 6666666 66 88888888 5 0 0000 66 5 5 5 0 5 4 66 4 66 777 4 8 99999 66 4 4 99999 11111 777 00 0 00 5 1 0 888 888 0000 5 111111 5 6666666666666666666 66 0000 333333333333333333333333333333333333333333333333333333 5 3 33333333333 5 66 88888888888888888 5 88 8 0 00000 1 0 0 1 5 99 5 77 1 7777 6 8 66 1 5 5 8888 77 5 77 222222222 999999 5 77 1 77 6 55555 0 1 1 5 6666666666666 666666 0 5 1 5 5 8 666 5 666 77 3 99 77 5 99 22222222 6 000 6 99 666 5 555 5 0 22222 5 44444 5 5 5 22 5 5 1 99 2 6 7 8 0 8 8 8 9999 8 111 5 8 111111 6 6 5 5 1 9 8 1 1 99 8 8 77777777777777777777777 0 111 444 0 5 4444444 3 22 1 1 111111111 1 333333333333 1 1 7 4444444 1 44 3 3 1 1 5 111 5 5 77777 66666 1 1 1 5 1 5 44444444 000 5 88 1 1 5 22 5 5 1 1 1
lowQualScore : . . .. ...... ... . . .. .. . . . .. . . ....... .... .. . . .. . . . ... .. . .. . . . . . . . .. . . ... . . . ... ..... .. .. . . . . . . . . . . . . . .. ... . . . ... . .. . .. . . . ..... . . . .. . . . . . . . . . ..... . . . . . . . . ... ... .... . . .. . . . . . . . . . . . .. . ....... . .. . . . . . . . . . ... ..... .. . . .... ........... . . . ....... .. ........ . . .... .. . . . . . . .. . .. ... . . ..... .. . . ..... ..... ... .. . .. . . . ... ... .... . ...... . ................... .. .... ...................................................... . . ........... . .. ................. . .. . . ..... . . . . . .. . .. . .... . . .. . . . .... .. . .. ......... ...... . .. . .. . ..... . . . . ............. ...... . . . . . . ... . ... .. . .. .. . .. ........ . ... . .. ... . ... . . ..... . ..... . . . .. . . . .. . . . . . . . . .... . ... . . ...... . . . . . . . . . .. . . ....................... . ... ... . . ....... . .. . . ......... . ............ . . . ....... . .. . . . . . ... . . ..... ..... . . . . . . ........ ... . .. . . . .. . . . . .
lowQualScore : 3 7 22 222222 777 0 7 88 22 7 7 3 22 7 3 7777777 2222 77 0 7 22 3 5 7 555 33 7 33 7 2 3 7 7 0 7 88 7 7 333 7 7 7 888 55555 55 22 7 7 7 7 3 7 7 7 7 5 7 7 7 22 777 7 7 7 777 7 88 0 00 7 7 7 77777 7 3 7 33 3 2 0 7 7 7 7 7 7 77777 7 7 7 6 7 7 7 7 111 000 1111 3 7 22 7 7 7 7 7 2 3 7 7 7 7 22 7 3333333 7 88 7 7 7 7 5 7 3 0 0 888 55555 99 5 4 8888 00000000000 0 0 4 2222222 99 11111111 0 4 1111 99 0 0 0 0 0 4 11 4 11 888 4 9 33333 11 4 4 44444 11111 888 66 1 77 0 4 2 888 888 6666 0 666666 0 5555555555555555555 99 6666 000000000000000000000000000000000000000000000000000000 0 2 99999999999 0 99 22222222222222222 0 44 4 3 44444 1 1 7 7 7 33 7 11 4 7777 6 7 77 6 7 7 0000 99 7 99 999999999 000000 7 99 0 99 6 11111 7 4 0 7 7777777777777 666666 7 0 0 0 0 7 000 7 111 99 2 22 77 2 22 77777777 7 888 7 22 888 7 777 7 7 33333 7 33333 4 7 7 33 4 7 0 22 0 7 3 0 8 0 0 0 4444 0 666 0 0 444444 7 7 7 7 0 8 0 0 0 00 0 0 44444444444444444444444 8 222 000 8 6 0000000 2 88 0 2 777777777 0 000000000000 0 0 3 0000000 0 00 7 3 0 0 0 555 0 0 55555 00000 0 0 0 5 0 5 00000000 000 0 00 0 0 0 00 5 0 0 0 0
consensus : CACGAGTC-TTGCTATATACCAC--GAGAT------ATACAAA---GACAA-GTGTCGCC-TTTATAGA-TAAATTAC--T-AAAA-CAAAGC--AGAC-AGGGTTACTT-------CTCT----AGAAAAAG-AACTGAGTGTGGAA-GTGACTCGAAGGCATTGTATGG-CCTGACA-A-C-CG-ACTTCTTGGAAACAATCATGAGCCC-TCTCTACCCA-CCAGCGACTG-TGNCATCGC-TTTGTCC--AACAGCTTTT-CTGANA-T-TTTCACAGGGA-AGATCCAGAC-CATCAGA--GCT---A-TGCT--GCA--TGA-GGCGAACCAAACTAAGTGACTTAGAAA-CTGA-T-GCTTTGAG-AG-CAGA-TATTAAGTTTCAGTGG-TCA-CACCCTTGATGAGTTTAC--TGCAGCATCG---TGTG-ACGAG-GTGAAAAAA-CTG---C-TCAC--GAGCTCANCAT-CT-A-AGTCCTGTGAAC-TTGA--TT-CCTATCCC-GACTTTCCTGCTTAAACAGTG-T-GTTGACGC-TTCGTTCCGAGTAATCACAACGATAGTT-AAC-A-AATC-A-TTGT-GCGAATCT--GN-TGGTGCCGATGA-ATTTCG-AACAGGCNATC-GTCA-GG-CCGC-TGTT--GAAGAAGCCG---GGTT----TGGACAAAGAAGTTCTTTAA--AA-C-TATC-GCCCCG-TCTCGAATCTT-CCATTTGTGTCGAAAATTGTTG-AGAAGATTGTTGCAAA--GAGAATA-GACCGT-------CATT-T--G-A-CTT-CAACTTTCTA-CATGAC-AACTTGC-AATCT-GC---GT-----ATCG--CTCATGTCATTCCACAGA-A--AC--A-G--A---CTT-CTCAGA-GTACA-------TCATG--ACAT--------T-GCGACTGCATTAGACAG-C--AACTGCTGT--ACTGT-CCTTG-T-AATGTT-AGA-CCTGTCAGCTGCTTT-CGATGTCA--TTGA-TCATCA--CA---TTCT-GTTT-C---G-GC--GCC-TCG-AA-CAC-AC-----TTACGGGA---TAGCA--GGTTCTGCATT-ATCGTGGAT-CAAGTCGTA---CTT---AAG----TG-ACA-G----TCTC-AAC--G---TG-----T----AGCCA--T----TGGCTT------T------GTCT-T-A-TC---GGA-CG------A----CAGACCA---CT-TGAAA-------TAC-GTG-TGCCACAAGGC--TCT---------------GGGT-GCTC-GGACCAAAACT---A-TATCGTATGTTCTCAAAGCCGATCGGT-GA--AATCTGT-CGA-CTTCATGA-CG-TGNAATATCACATA-NATGCAGA-T-GACACGC-A--AATCTACATT--G-TGG--T---------CGAACC----GT-GGA--AAANTGGG--AGGAC-AT--ATCACCAAGACTCAANAATTGTCT-CTC-----TG------AGATCCGTGAATGGATGAGCAT-CAATTTNCTGAAGCTGAA-TCAGGAC-AAGACTGAA-C-TGA-TGGTTTTCG--CTCCGAAACATC--GCGCTAAGAAC--GTAGCT-------GA-ACTA--AGCATCTCGTTCGGAGG-CTGTGTCAT--TCA-CA-A---T-GCTCCGTACGT--A--AAAAAACC-T-----GGGTGCTTATTT-TG-ACAGAA-CCCTTTGC-ATGGAAAANC--AATGCGAC-GCAAT-AACGAGGTCGTG-CT-ACTT-GAACATTCGGGA--ATT-GG--AGTATCCGTCAGTGTATC-TCA-----GAGGTTGCATGT-AAGACG-CTCGT-CA-GNTCACT-TGTAACGTCTCGCCTTGACTACGG-AAATG-CA-TTCCTCTA---C-TCTAT-T--------A--AAACAGCGTCTTTAACA---AAGCTGCAAA-------GTGTACAGAACACCGCNGCTCGACT---TA----TCANTCGAACACGAAA---GTAC---CATATNACNCCGGTATTGAT-CAG-CCTACANTGGCTTCCGGTACAGTTCCGAA-TTCAATACAAANTTCTAGTGCACGCCTNCAAGGCCGCTAAACAGATTTGGCACCTGTATATCTCAAGGGANCTTANCNAGCCGTACNCAAACCCTGCGAGATTATTGCGCTCCGGAATCAANANCATGCTTTTNNAAGTTCCATCGGACCNGNACGAAGNCATATGGAGA
Reference ( family-1163 ) : CACGAGTC-TTGCTATATACCAC--GAGAT------ATACAAA---GACAA-GTGTCGCC-TTTATAGA-TAAATTAC--T-AAAA-CAAAGC--AGAC-AGGGTTACTT-------CTCT----AGAAAAAG-AACTGAGTGTGGAA-GTGACTCGAAGGCATTGTATGG-CCTGACA-A-C-CG-ACTTCTTGGAAACAATCATGAGCCC-TCTCTACCCA-CCAGCGACTG-TGNCATCGC-TTTGTCC--AACAGCTTTT-CTGAAA-T-TTTCACAGGGA-AGATCCAGAC-CATCAGA--GCT---A-TGCT--GCA--TGA-GGCGAACCAAACTAAGTGACTTAGAAA-CTGA-T-GCTTTGAG-AG-CAGA-TATTAAGTTTCAGTGG-TCA-CACCCTTGATGAGTTTAC--TGCAGCATCG---TGTG-ACGAG-GTGAAAAAA-CTG---C-TCAC--GAGCTCANCAT-CT-A-AGTCCTGTGAAC-TTGA--TT-CCTATCCC-GACTTTCCTGCTTAAACAGTG-T-GTTGACGC-TTCGTTCCGAGTAATCACAACGATAGTT-AAC-A-AATC-A-TTGT-GCGAATCT--GN-TGGTGCCGATGA-ATTTCG-AACAGGCNATC-GTCA-GG-CCGC-TGTT--GAAGAAGCCG---GGTT----TGGACAAAGAAGTTCTTTAA--AA-C-TATC-GCCCCG-TCTCGAATCTT-CCATTTGTGTCGAAAATTGTTG-AGAAGATTGTTGCAAA--GAGAATA-GACCGT-------CATT-T--G-A-CTT-CAACTTTCTA-CATGAC-AACTTGC-AATCT-GC---GT-----ATCG--CTCATGTCATTCCACAGA-A--AC--A-G--A---CTT-CTCAGA-GTACA-------TCATG--ACAT--------T-GCGACTGCATTAGACAG-C--AACTGCTGT--ACTGT-CCTTG-T-AATGTT-AGA-CCTGTCAGCTGCTTT-CGATGTCA--TTGA-TCATCA--CA---TTCT-GTTT-C---G-GC--GCC-TCG-AA-CAC-AC-----TTACGGGA---TAGCA--GGTTCTGCATT-ATCGTGGAT-CAAGTCGTA---CTT---AAG----TG-ACA-G----TCTC-AAC--G---TG-----T----AGCCA--T----TGGCTT------T------GTCT-T-A-TC---GGA-CG------A----CAGACCA---CT-TGAAA-------TAC-GTG-TGCCACAAGGC--TCT---------------GNGT-GCTC-GGACCAAAACT---A-TATCGTATGTTCTCAAAGCCGATCGGT-GA--AATCTGT-CGA-CTTCATGA-CG-TGNAATATCACATA-NATGCAGA-T-GACACGC-A--AATCTACATT--G-TGG--T---------CGAACC----GT-GGA--AAANTGGG--AGGAC-AT--ATCACCAAGACTCAANAATTGTCT-CTC-----TG------AGATCCGTGAATGGATGAGCAT-CAATTTNCTGAAGCTGAA-TCAGGAC-AAGACTGAA-C-TGA-TGGTTTTCG--CTCCGAAACATC--GCGCTAAGAAC--GTAGCT-------GA-ACTA--AGCATCTCGTTCGGAGG-CTGTGTCAT--TCA-CA-A---T-GCTCCGTACGT--A--AAAAAACC-T-----GGGTGCTTATTT-TG-ACAGAA-CCCTTTGC-ATGGAAAANC--AATGCGAC-GCAAT-AACGAGGTCGTG-CT-ACTT-GAACATTCGGG---ATT-GG--AGTATCCGTCAGTGTATC-TCA-----GAGGTTGCATGT-AAGACG-CTCGT-CA-GNTCACT-TGTAACGTCTCGCCTTGACTACGG-AAATG-CA-TTCCTCTA---C-T-TNT-T--------A--AAACAGCGTCTTTAACA---AAGCTGCAAA-------GTGTACAGAACACCGCNGCTCGACT---TA----TCANTCGAACACGAAA---GTAC---CATATNACNCCGGTATTGAT-CAG-CCTACANTGGCTTCCGGTACAGTTCCGAA-TTCAATACAAANTTCTAGTGCACGCCTNCAAGGCCGCTAAACAGATTTGGCACCTGTATATCTCAAGGGANCTTANCNAGCCGTACNCAAACCCTGCGAGATTATTGCGCTCCGGAATCAANANCATGCTTTTNNAAGTTCCATCGGACCNGNACGAAGNCATATGGAGA
gi|1 : CACGA-TC-TTGCTATATACCAC--GAGAT------ATACAAA---GACAA-GTGTCGCC-TTTATAG--TAAATTAC--T-AAAAACAAAGC--AGAC-AGGGTTACTT-------CTCT----AGAAAAAG-AACTGAGTGTG-AA-GTGACTCGAAGGCATTGTATGA-TCTGACA-A-C-CG-ACTTCTTGGAAACAATCATAAGCCC-TCTCTACCCA-CCAGTGACTG-TGCCATCGC-TTTGTCC--AACAGCTTTT-CTGAT--T-TTTCACAGGGA-AGATCCAGAC-CATCAGA--GCT---A-TGCT--GCA--TGA-GGCGAACCAAACTAAGTGACTTAGAAA-CTGA-TTGCTTTGAG-AG-TAGA-TATTAAGTTTCAGTGG-TCA-CACCCTTGATGAGTTTAC--TGCAGCATCG---TGTG-ACGAG-GTGAAAAAA-CTG---C-TCAC--GAGCTCAACAT-CT-A-AGTCCTGTGAAC-TTGA--TT-CCTATCTC-GACTTTCCTGCTTAA-CAGTG-T-GTTGACGCCTTCGTTCTG-GTAATCACAACAATAGTT-AAC-A-AATC-A-TTGT-GTGAATCT--GGGTGGTACCGATGA-ATTTCG-AACAGGCAATC-GTCA-GG-CCGC-TGTT---AAGAAGCCG---GGTT----TAGACAAAGAAGTTCTTTAA--AA-C-TATC-ACCCCG-TCTCGAATCTT-CCATTTGTGTCGAAAATTGTTG-AGAAGATTGTTGCAAA--GAGAATA-GACCGT-------CATT-T--G-A-CTT-TAACTTTCTA-CATGAC-AACTTAC-AATCT-GC---GT-----ATCG--CTCATGTCATTCCACAGA-G--AC--A-A--A---CTT-CTCAGA-GTACA-------TCATG--ACAT--------T-GCGACTGCATTAGACAG-C--AACTGCTGT--ACTGT-CCTTG-T-AAGGTT-AGA-CCTGTCAGCTGCTTT-CGATGTCA--TTGA-TCATCA--CA---TTCT-GTTT-C---A-GC--GCC-TCG-AA-CAC-AC-----TTACGGGA---TAGCA--GGTTCTGCATT-ATCGTGGAT-CAAGTCGTA---CTT---AAG----TG-ACAGG----TCTC-AAC--G---TG-----T----AGCCA--T----TGGCTT------T------GTCT-T-A-TC---TGA-CA------A----CAGACCA---CT-TGAAA-------TAT-GTG-TGCCACAAGGC--TCT-----------------GT-GCTT-GGACCAAAACT---A-TATTGTATGTTCTCAAAGCCGATCGGT-GA--AATCTGT-CG--TTTCATGA-CG-TGAAATATCACATA-AATGCAGA-T-GACACGC-A--AATCTACATT--G-TGG--T---------CGAACCA---GT-GGA--AAAATGGG--AGGAC-AT--ATCACCAAGACTCAAGAATTGTCT-CTC-----TG------GGATCCGTGAATGGATGAGCAT-CAATTTACTGAAGCTGAA-TCAGGAC-AAGACTGAA-C-TGA-TGG-ATTCG--CTCCGAAACATC--GCGCTAAAAAC--GTAGCT-------GA-ACTA--AGTATCTCGTTCGGAGA-CTGTGTCAT--TCA-CA-A---T-GCTCCGTACGTAAA--AAAAAACC-T-----GGGTTCTTATTT-TG-ACAGAA-CCCTTTGC-ATGGAAAAAC--AATGCAAC-GCAAT-AAGGAGGTCGTG-CT-ACTT-GAACATTCGGGAATATTGGG--AGTATCCGTCAGTGTATC-TCA-----GAGGTTGCATGT-AAGACG-CTCGT-CA-ACTCTCTGTGTTACATCTCGACTGGACTACAG-CAACG-CC-TTGATTTA---CGG-CAT-T--------AACAAGCAGC-----TGACGGATAAGCTGCAGA-------GAGTACAGAACACAGCAGCCCGACT---TA----TTACACGAACACGGAAATCGTAC---CATATAACTACGGTACTGATGCAG--CTACACTGGCTTCCAGTG-AGTTCAGAA-GCCAATACAAACTTTTATTGTACGTCTTCAAGG-CGCTAAACA-ATTTGGCACCTGTATATCTCAAGGGAGCTTATCAAGCCGTACACAAACCCTGCGAGATTATTGCGCT-CGGAATCAAAATCAT-TTTTTTCAAGTTCCATC-GACCCGTACAAAAACATATGGAGA
gi|10 : TAC-AATCC-GT---CT-----ATCGG-CTCAT--CACTCAAC-GA-A--AC--T-GC-A---CTC-CTC-GA-GT-CA-------TTATA--AAAT--------A-TCTAC-ACCCTA-ACAA-G--AACTTC-GTTAACTGT-ACTC--T-CATGCT-TGA-TCT-TCAGCTGCAT--CGACGTTA--TATA-TTACCA--TA---TT-T-ATTT-C---G-GA--GAC-TCG-AA-CAC-AC-----GTTTGCCA---TATCT--GACGC-GCTTT-CT----GAT-CAATTC--A---ATT---GAC----CA-ACA-G----TC-C-AA--------G-----T----AAC-A--T----AGGCTC------GA-----GCCT-T-A-TC---GGA-TG-----------CAGAA-G---CTCTGAAA-------T-C-GGG-TGATCTAAGG----------------------------TC-GGACC----CTCGGA-TGACGCATGTTTCCAAACCTAATCGGA-AA--CATCTGTACGAAC--CATCA-CA-TGCAATACCAC-TG-CTTGCAGA-T-GACACTC-A--AATATACATC--G-TGA--T---------AGAGCCCGCTAT-G------ACTTAG--A-GAT-GTTCGTCCCC---TCTTAATAAC--TCT-CAC-----CGGACATCAGATC-----AT-GATGTTTAC-TAATCTTCTGAAGTTGAACCCAAGAT-AAAAC-GAA-T-TAA-C--TTTTT---CTCC
gi|11 : A-CA-A---TAGCCAGGTA-GT--A--AAAAACTT-T-----GGGGGCTTTTTTATG-A---AA-ACCTAAGCGATGGGAAAAC--CATCTGGT-GCAA
gi|16 : ctgtaaatgtattaacaaagccaataggacgaaaaatttgcccgaagaaccaatactatgtcatatcacgttaacagctcgacgacacgcagggtctatttagtaataaaatcgttcagacaactgggtctaaatgtttacaaagagacttcgaagcctgctttatatacagcatatatcagcaccaattggattagtttcatgcaaatatgctagataatgaaccacgacaagacagaagcttattgtgtatcagaccatcgagaaacagcaagccgtaaaCTTT-CGATGTGA--TCGA-TCATTA--GAAGATACC-TTTTAC---ATACTAGTC-TCG-AA--AT-AGAGATGTAAAGGGAAATTAACACTGCCTCTGCTTG-ATCTTGGATACAA-TCATA---TTCTGAAAG----TG-ACA-A----TGTC-AGC------TG-----T----AGCCGTTT----TGGTTTCCGAACT------GTCT-GAA-TCCCAGGA---------A----CTTATCG---AT-CG--G-------TA----G-TTCCGCAAGGG--TCT---------------GTGTGGCTC-GG-CTCGAGTT---G-CCT----TGTTC----AGGCAACCGATAGAATAATATGT--GA-CTTCATGT-CG-TGGACTATCACTTA-GAgtggccaagtactgttataattccagtttagaggaacataggaagaatcagataacctcatcgacgatcggtacatacaaaacataatatctcactgctcttcgctcacatcaagactagactatgctaat
gi|18 : -TGTAATGTCTCGCCTTGACTACGG-AAATG-GA-CTCCTCTA---C----AT-T--------A--AAACAGCGTATTTAACA---AAGCTGCAAA-------acttgtag
gi|2 : CACGAATCCTTGCTATATACCAC--GAGAT------ATACAAA----ACAAAGTGTCGCCATTTATAG--TAA-TT-C--T-AAAA-CAAAGCCAAGACCAGGGTT---T-------CTCT----AGAAAAAG-AACTGAGTGGTGAA-GTGACTCGAAGGCATTGTATGATCCTGACAGA-C-CG--CTTCTTGGAAACAATCATAAGCCCGTCTCTACCCA-CCAGTGACTG-TGCCATCGC-TTTGTCCC-AACAGCTTTTTCTGAT--T-TTTCACAGGGA-AGATCCAGACGCATCAGA--GCT-----TGCT--G-A--TGA-GGCGAACCAAACTAAGTGACTTAGAAA-CTGAAT-GCTTTGAG-AG-TAGAATATTAAGTTTCAGTG--TCA-CACCCTTGATGAGTTTAC--TGCAGCATCG---TGTG-ACGAG-GTGAAAAAAACTG---C-TCAC--GAGCTCAACAT-CTTA-AGTCCTGTGAAC-TTGA--TTTCCTATCTC-GACTTTCCTGCTTAA-CAGTG-T-GTTGACGCCTTCGTTCTG-GTAATCACAACAATAGTT-AAC-A-AATCCA-TTGTTGTGAATCCTGGG-TGGTACCGATGA-ATTTCGAAACAGGC-ATC-GTCA-GG-CCGC-TGTT--TAAGAAGCCG---GGTT----TAGAC-AAGAAGTTCTTTAA--AA-C-TATCAACCCCG-TCTCGAATCTT-CCATTTGTGTCGAAAATTGTTG-AGAAGATTGTTGC-AA--GAGAATA-GACCGT-------CATT-T--G-ACCTT-TAACTTTCTA-CATGAC-AACTTAC-AATCT-GC---GT-----ATCG--CTCATGTCATTCCACAGAGA--ACAAA-A--A---CTT-CTCAGA-GTACA-------TCATG--ACAT--------T-G-GACTGCATTAGACAG-C--AACTGCTGT--ACTGT-CCTTGATAAAGGTT-AGA--CTGTCAGCTGCTTTCCGATGTCAATTTGA-TCATCAACCA---TTCT-GTTTCC---A-GC--GCCTTCGAAA-CAC-AC-----TTACGGGA---TAGCAG-GGTTCTGCATTAATCGTGGAT-CAAGTCGTA---CTT---AAG----TG-ACA-G----TCTC-AA---G---TG-----TAA--AGCCA--T----TGGCTT------T------GTCT-T-A-TC---TGA-CA------A----CAGACCAG--CT-TGAAA-------TAT-GTG-TGCCAC-AGGC--TCT-----------------GT-GCTTGGGACCAAAACT---A-TATTGTATG-TCTCAAAGCCGATCGGT-GA--AATCTGT-CGC-TTTCATGACCG-TGAAATATCACATA-AATGCAGA-T-GACACGCAA--AATCTACATT--GTTGGGTT---------CGAACA----GT-GGA--AAAATGGG--AGGACAAT--ATCACCAAGACTCAAGAATTGTCTCCTC-----TG------GGATCCGTGAATGGATGAGCATCCAATTTACTGAAGCTGAA-TCAGG-C-AAGACTGAA-C-TGA-TGA-TTTCG---TCCGAAACATC--GCG-TAA-AAC--GTAGCT-------GA-ACTA--AGTATCTCGTTCGGAGGACTGTGTCAT--TCAGCA-A---T-GCTCCGTACGTAAA--AAAAAACC-T-----GGGTTCTTATTT-TGAACAGAACCCCTTTGC-ATGGAAAAACCAAATGCAAC-GCAATAAAGGAGGTCGTGTCT-ACTT-GAACATTCGAAT--ATT-GGGAAGTATCCGTCAGTGTATCTTCA-----GAGGTTGCATGT-AAGACGCCTCGT-CA-
gi|20 : TGCCGATGA-ATTTCA-AACAGGCCATC-GTCA-GG-CCGC-TGTT--GAAGAAGCCG---GGTT----a
gi|21 : AT-CAATTTCCTGAAGCTGAA-TCAGGAC-AAG
gi|3 : CACGAGTC-TTGCTATATACCAC--GAGATGAGAATATACAAA---G-CAATGTGTCGCC-TTTATAGAGTAAATTAC--T-AACA-CAA-GC--AGAC-AGA-TTACTTTTCTCTCCTCT----AGAAAATT-A-CTGAGTGTG--A-GTGACTCAAAGGCATT-TATGGGCCTGA-A-A-C-CGGACTTCTTGGAAACA-TCA--AGACT-TCTCTCTCCAGCCAGCGCCTG-TGACA--GC-TTTGTCCGAAACAGATTTT-CTGAAAAT-TTTCACAGGGCCAGATCCAGAC-CATCAG---GCT---A-TGCTT-GCAATTGA-GGCGAACCAATCTAAGTGACTTAGAAA-CTGA-T-GCT--GAG-AGGCCGA-TATTAA--TTC-GTGGATCA-CACC-TTG-TGAGTTTAC--TGCAGCATCG---TGTGGACGAG-GTGAAAAAA-CTG---CCTCACTTGAGCTCACCA--CT-A--GTCCTGTGAAC-TTGA--T--CCTATCCC-GACTTTTCTGCTTAAACAGTG-T--TTGACGC-TTCGTTCCGAGTAATCACAACGATAGTT-AAC-AGAATC-A-TTGT-GCGAATCT--GT-TG-TGCCGATGA----TTG-AA-AAGCCATC-GTCA-GG-GCGC-TGTT--GAAGAAGCCG---GGTT----TGGACAAAGAAGTC--TTAA--AA-C-TATC-GCGCGG-TTTCGAATCTT-CCATTTGTGTCGAAA-TTGTTG-AGA-GATTGTT-CAAA--GAGAATA-GACCATTCACACACATT-TTGG-A-CTT-CAACTT-CT--CATGTC-AA-TTGC-AATCT-GC---GT-----ATCGGCTTCA-GTCATCCTACAGA-AGTAC--A-G--A---CTT-CTCAGA-GTACA-------TCATG--ACAT--------T-GCG-CTGCATTAGACAA-TCTAACTGCTGT--GCTGT-CCT-G-T-AATGTTTAGATCCTGTCAGCTGCTTT-CGATGTCA--TTGA-TCATCA--CA---TTCT-GTTT-C---G-GC--GCC-TCG-AA--ACAAC-----TTACGGGA---TAGCA--G--TTTGCATT--TCGTGGAT-C-AGT-GTA---CTT---AAG----TG--CATA----TCCC-AAT--GGT-TG-----T----AGCCA--T----TGGC-T------T------G--T-T-ATTC---GGC-CG------------AGA-CA---CT-TGAAA-------TACGGTG-TGCCACAAGGC--TCTTGAGGGGGGGGGGGGGGGT-GCTT-AGACC-AAACTAA-A-TATCGTATGTTCTCAAAG-CGATCGGT-GAT-AATCTGT-CGA-CTTC-TGA-AA-TGCAATATCACATA-TATGGCGA-TAGACACGG-C--AATCTAC-TT--G-TGG--T---------CGAA-C----AT-GGA--AAATTGGG--AGGAC-AT--ATCACCAAGACTCAATAATTGTCT-CTC-----TG------AGATCCGTG--TGGATGAGCAT-CAATTTCCTGAAGCTGAA-TCAGGAC-AAGACTGAATC-TGA-TGGTTTTCG--CTCCGAAACATC--GC-CTAAGGAC--GTAGCT--------A-ACT---AGCATCTCGTTCGGAGG-CTGTGTCTTCATCA-CG-A---T-GCTCCGTACGT-----AAAAAACC-T-----GGGTGCTT-TTT-TG-ACAGAA-CC--TTGC-ATGGAAAACC--AATGC-AC-GC-AT-AACG-GGTCGTG-CT-ACTTGGAACATTCGGGAT-ATT-GG--CGTATCCGT-AGTGTATC-TCT-----GAGGTGGCCAGT-AAGACG-CTCGT-CA-
gi|4 : gCACGAGTT-CTTCTATATACCAC--GAGAT------ATACAAA---GACAATGTGTCGCC-TTTATAGAGTAAATTAC--TTAACA-CAA-GC--AGAC-AGGATTACTT-------TTCTTTCTAGAAAAAT-TACTGAGTGTGGAA-GTGACTCAAAGGCATTGTATGG-CCTGAAA-A-C-CG-ACTTCTTGGAAACAATCA--AGACC-TCTCT-CCTAGCCAGCGACTG-TGACATAGC-TTTGTCC--AACAGATTTT-CTGAAA-T-TTTCACAGGGA-AGATCCAGAC-CATCAGG--GCT---AATGCTT-GCA--TGA-GGCGAACCAA-CTAAGTGACTTAGAAAACTGA-T-GCTTTGAG-AG-CAGA-TATTAAGTT-CAGTGG-TCA-CACC-TTGATGAGTTTAC--TGCAGCATCG---TGTG-ACGAG-GTGAAAAAA-CTG---C-TCACT-GAGCTCACCA--CT-A-AGTCCTGTGAACCTTGA--T--CCTATCCC-GACTTTTCTGCTTAAACAGTG-T--TTGACGC-TTCGTTCCGAGTAATCACAACGATAGTT-AAC-A-AATC-A-TTGT-GCGAATCT--GT-TG-TGCCGATGA-ATT--A-AACAGGCCATC-GTCA-GGGCCGC-TGTT--GAAGAAGCCG---GGTT----TGGACAAAGAAGTC--TTAA--AA-C-TATC-GCGCAG-TTTCGAATCTT-CCATTTGTGTCGAAA-TTGTTG-AGAGAGTTGTT-CAAA--GAGAATA-GACCAT-------CATT-T--GGA-CTT-CAACTTTCTA-CATG-C-AA-TTGC-AATCT-GC---GT-----ATCG--CTCATGTCATCCTACAGA-AGTAC--A-G--A---CTT-CTCAGA-GTACA-------TCATG--ACAT--------TTGCGACTGCATTAGACAATC--AACTGCTGT--GCTGT-CCTTG-T-AATGTTTAGA-CCTGTCAGCTGCTTT-CGATGTCA--TTGA-TCATCA--CA---TTCT-GTTT-C---G-GC--GCC-TCG-AAACA--AC-----TTACGGGA---TAGCA--GGTT-TGCATT--TCGTGGAT-CAAGTCGTA---CTT---AAG----TG-ACATA----TCTC-AAT--G---TG-----T----AGCCA--T----TGGCTT-------------GTTT-T----C---GGC-CG------A------GAC-A---CT-TGAAA-------TAG-GTG-TGCCACAAGGC--TCT---------------TGGT-GCTT-AGACCAAAACT---AATAT-GTATGTTCTCAAAGCCGATCGGT-GAT-AATCTGT-CGA-CTTCATGA-AA-TG-AATATCACATA-TATGCAGA-T-GACACGC-A--AATCTACATT--G-TGG--T---------CGAAC-----AT-GGA--AAATTGGG--AGGAC-AT--ATCACCAAGACTCAATAATTGTCT-CTC-----TG------AGATCCGTGAATGGATGAGCAT-CAATTTCCTGAAGCTGAA-TCAGGAC-AAGAC-GAA-C-TGA-TGGTTTTCG--CTCCGAAACATC--GCGCTAAGGAC--GTAGCT-------GA-ACTA--AGCATCTCGTTCGGAGG-CTGTGTCAT--TCA-CAGA---T-GCTCCGTACGT-----AAAAAACC-T-----GGGTGCTTATTT-TG-ACAGAA--CCTTTGC-ATGGAAAACC--AATGC-AC-GC-AT-AACGAGGTCGTG-CTAACTT-GAACATTCGGA---ATT-GG--CGTATCCGT-AGTGTATC-TCT-----GAGGTTGCAGGTAAAGACG-CTCGT-CA-a
gi|5 : gCACGAGTC-TTGCTATATACCACACGAGAT------ATACAAAAAGGACAA-GTGTCGCC-TTTATAGA---AATTACAAT-CAAA--AAAAC--AGAC-AGA-TTACTT-------CTCT----AGAAAAAATAACTGAGTGTGGAAAGTGACTCGAAGGCATGATATGG-CCTGACA-A-AACG-ACTTCTTGGAAACAGTCAAGAGCCC-TCTCTAACC--CCAGTGACTGTTGACATCGCATTTGTCC--CATAA--------GATA-TGTTTCACCAGGA-AGATCCAGAC-CATCAGAGGGCTATAA-TGCTGAGCA--TGAGGGCGAACCAA--TACGTGACTCAGAAA--TGA-T-GCTTTGAGAAG-CAGA-TATTAA-TTACAGTGG-TCAGCACCCTTGATGAGTTTACTTTGCAGCATCGAGATGTG-ACGAG-GTGAAAAAA-ACGAGAC-TCAC--G-GCTCATCATACT-ATAGTCCTGTGACA-TTGAATTC-CCTATCCCGGACTTTCCTGCTTAGACAGTGAT-GTTG------TTGTT---GGTAATCACAACGATAGTTAAACAA-AATC-ATTTGT-GCGAATCTA-AA-TGGTACCGATGAGATTTCA-AACA-GCAATCAGTCAGGG-CCGCTTGTTGAGAAGAAGCCGAGAGGTTTGTGTGGAC-AAGAAGTTCTTTAATTTA-CGTATC-GCCACGTTTTCGAATCTTACCA-TTGT-TCGAAAATTGTTGAAGAAGATTGTTGCAAAAGGAGAATA------TTTA----CATTATG-G-A-CTTGCAACTTTCTACCATGACAAACTTGCAAATCT-GCTTTGTTCTNNNNNN--NNNNNNNNNNNNNNNNNN-N--GC--ATGTCA---TTT-TACAGA-G-ACAGCACTTCTCATAGTACATCATGACATT-GCGACTGCATTAGACAA-C--AACTGCTGT--GCTGT-CCTTG-T-AATGTT-AGA-CCTGTCAGCTGCTTT-CGATGTCA--TTGA-TCATGA--CA---TTCT-GTTT-C---G-GC--GCC-TCG-AA-CTC-AC-----TTACGGGA---TAGCA--GGTTCTGCATT-ATCGa
gi|6 : aatagtaggacatattgataaaacacatgagggacaacagataactatcttgcaggcaagtccccggtgtcagatagtcagtacttgtgtgactataaggagtatgtcctcctcaggatcataaatgggaatttacactttactgccaaatttctacgatttcgacgcaacacaaaacgggtttccttcaggaattacgcaatatcataacttaacgaatttaataaagatacattgaaaaacgtcaactgcagctgtatcagcagtaaatacaggttgacatctcgtcaaaattctaaataagaatgcgcgcagaggtctttggacaagcattgcttttttacaatcaaaagagatcgtcctgcggaccgaactctccatgggtactcggatgaattgcgagaaagccaaacgcgacatgacgaaaaaccggaagcgtgagtggacaCACGA-TC-TTGCTATATACCAC--GAG-T------ATACAAA---GACAA-GTGTCGCC-TTTATAG--TAAATTAC--T-AAAA-CAAAGC--AGAC-AGGGTTACT--------CTCT----AGAAAAAG-AACTGAGTGTG-AA-GTGACTCGAAGGCAA-GTATGA-TCTGACA-AAC-CA-GCTTCTTGGAAACAATCATGAGCCC-TCTCTACCCA-CCAGTGACTG-TGCCATCGC-TTTGTCC--AACAGCTTTT-CTGAAT-T-TTTCACAGGGA-AGATCCAGAC-CATCAGA---CT---A-TGCT--GCA--TGA-GGCGAACCAAACTAAGTGACTTAGAAA-CTGA-TTGCTTTGAG-AG-TAGA-TATTAAGTTTCAGTGG-TCA-CACCCTTGATGGATTTAC--TGCAGCATCG---TGTG-ACGAGTGTGAAAAA--CTG---C-TCAC--GAGCTCAACAT-CT-A-AGTCCTGTGAAC-TTGA--TT-CCTATCCT-GACTTTCCTGCTTAAACAGTG-TTGTTGACGC-CTCGTTCTG-GTA-TCACAACAATAGTT-AAC-A-AATC-A-TTGT-GTGAATCT--G--TGGTACCGATGA-ATTTCG-AACAGGCAATC-GTCA-GG-CCGC-TGTT--TAAGAAGCCG---GGTT----TAGACAAAGAAGTTCTTTAA--AAAC-TAT--ACCCCG-TCTCGAATCTT-CC--TT-TGTCGAAAATTGTTG-AGAAG-TTGTTGCAAA--GA--ATAAGACCGT-------CATT-T--G-A-CTT-TAACTTTCTA-CATGAC-AACTTAC-AATCT-GC---GT-----ATCG--CTCATGTCATTCCACAGA-G--AC--A-A--AACACTT-CTCAGA-GTACA-------TCATG--ACAT--------T-GCGACTGCATTAGACAG-C--AACTGCTGT--ACTGT-CCTTG-T-AAGGTT-AGA-CCTGTCAGCTGCTTT-CGATGTCA--TTGT-TCATTA--CA---TTCT-GTTT-C---A-GC--GCC-TCG-AA-CAC-AC-----TTACGGGA---TAGCA--GGTTCTGCATT-ATCGTGGAT-CAAGTCGTA---CTT---AAGGAGCTGCACA-GGTATCCTCAAAC--GCTCTGACCGATGATAAGCCA--TGGACTAGCTT------T------GTCTCT-ACTCT--AGACCGAGATATA----CAGACTC---CT-TAAAATAAAGACTAT-GTGTTGCCACAAAGCTGTCT---------------AGGT-GCT
gi|7 : ggcgACGTGC-AATCTTGC---AT-----ATCG--CGCTTGTCACTCTACCGA-A--AC--T-G--CT--CTTACTTACATGTTCA-------TCACG--ACAT--------T-GTGTCTGCATTAGACGG-A--AATTCTTGT--A-TGTCCCTTG-T-GATGCT-CGA-CCTTTCTGCCGCCTT-TGATGTGA--TAGATTCACAA--CA---TTCTCATCT-CATTG-G--------CG-A--------------TATGGAA---TATCT--GGATCAGCATT-GGCATGGTT-TAGATCATATCTCCT----GG----TC-GCA-G------TC-AGCAGG---TT-----T-----GCAA--T----TGGTTT------TAAAACAGTTT-----TC---AG--CG------ATGTTCAGGCTATGTTT-TG--------------GCG-TTTCCCAGGGC--TCT---------------GTGT-G----GGACCACGTCT---T-TACTGCATGTTTTCTAAACC-ATTGGT-GA--AATATGC-CGA-CGTCATTA-CATTGTGCTATCAC-TGTTATGCCGACT-GACACGC-AGGAA--TATATG--G-TTA--TAAAACCTAACGAACC----CT-GAACCAGAATTGC--A-GAC------------AGACTTCAAAAGTGCCT-CTCAAATATA------AGCCCC-----TGGATGAA-GT-CAA-ATACTAAAACTAAA-TCAGGACAAAAACTGAA-CTTGATTCATTTTTG--CTCCCAAAAA----G----AAGATCTTGTGACTTCTTTTAGA-TTTGTCAAC-TCACATTTGGAGG-ATCGATCAT--T-A-CA-AG--T-GTGTCGTGCGT--T--AAAAAACCTT-----TGGTGTTTTCTT-TG-ATAAGA-TCTAT--C-ATGGAacattgatccaaaaaata
gi|7 : TCAT-CA-GATCACT-TGTAATGTCTCGCCTTGACTACGGAAAATGCCA-CTCCTCTA---C-TCTGT-TAACCGTTAA--AAACAGCGTCTTTAACA---AAGCTGCAAA-------ATGTAC-GAACA-CGCTGCTCGACtttcccaataaaacatctagtcaaactgtgctactcccaacttaaaaacatcgatagaattagtaactgtccaacaatcatcagatcacttgtaatgtctcgccttgactacggaaaatgccactcctctactctgttaaccgttaaaaacagcgtctttaacaaagctgcaaaatgtacgaacacgctgctcgac
gi|8 : acgtgcaatcttgcatatcgcgcttgtcactctaccgaaactgctcttacttacatgttcatcacgacattgtgtctgcattagacggaaattcttgtatgtcccttgtgatgctcgacctttctgccgcctttgatgtgatagattcacaacattctcatctcattggcgatatggaatatctggatcagcattggcatggtttagatcatatctcctggtcgcagtcagcaggtttgcaattggttttaaaacagttttcagcgatgttcaggctatgttttggcgtttcccagggctctgtgtgggaccacgtctttactgcatgttttctaaaccattggtgaaatatgccgacgtcattacattgtgctatcactgttatgccgactgacacgcaggaatatatggttataaaacctaacgaaccctgaaccagaattgcagacagacttcaaaagtgcctctcaaatataagcccctggatgaagtcaaatactaaaactaaatcaggacaaaaactgaacttgattcatttttgctcccaaaaagaagatcttgtgacttcttttagatttgtcaactcacatttggaggatcgatcattacaagtgtgtcgtgcgttaaaaaacctttggtgttttctttgataagatctatcatggatttcccaataaaacatctagtcaaactgtgctactcccaacttaaaaacatcgatagaattagtaactgtccaacaaGCTGA-C-GACACGC-A--GGTC--CATTTAG-TGA--T---------AAAACC----GTTAGA--CAACTGGACTAAGTT--T--AT-AGAAAGACTCGAAGCCTGTTT-AGC-------------AGAT----------ATCAGCA---AATATGCTGAAATTGAA-CCATGAC-AAGGCAGAG-T-TGA-TAGTTTTCGGACCTCGAAACAGCAAGCGTTA----C--CTAGCT-------AATACCA---GCATTACTTTCGATGG-ATTTGTCAT--T----A-AGTCT-GTTCCG---GT--ATTCAAAAACT-TAGGGGGGGGGGGTATTT-TG-ACGAAA-ATCTTAGC-ATGAGATACC--A-TTTGTCTGCAAT-GGCTAAGTTTTG-TT-ATTT-------CCAG-----TT-G---AGTAAC-------ATACC-TCATCGACGATGATACATGC-AAAACA-TTAATACATGCTC--T-CGTCACATCAAGGCTAGACTATGC-TGATG-CA-TTGTTATATGGC-C-TATCT--------A--A--CAGTGC---TAACA---A-----CAAATTAGTACGTGTACAAAATACCACAGCAAGGAT---GA----TCAGTCGCACTAAAAA---GTATGATCATATTACACCGGTATTGA--CAGACCTTCATTGGCTTCCGGTACAGTATTGTA-TTCAATTCAAAGTTCTTGTGCATGCCTACAAGGCCGTT---CAGATTTGG-ACCTA-----CTC-----ACCTTAGCTAACTG-ACTC-AACC--------TTATT---CTCCAGAA--AACAGTATGCTTTTGAAAGTTCC-TCGGACTAGAACGAAGTCATATGGAAA
gi|9 : CGTGT-CGAACA-ATCTT-CA-GGTCACT-TGTAATGTCTCGCCTTGACTACGG-AAATG-CACTTCCTCTA---C-TCTGT-T--------A--AAACAGCGTCTTTAACA---AAGC-ACAAAC------ATGTACAGAACACTGCTGCTCGACTATGTACCGCTCCTTCAAACACGA------------CATATCACCCCATT-TTAAT-CTC-TCTACAATGGCTACTGTTAC--TTCCGAATTTCAGTACAAAATCCTAGTcagacgcttgactattttgcgccaataatgtggatcgcctaaccatcaggattatattgtgccaaatcactggat
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ATAGCGGGACATATGTCCCGGGACATAAGTCCCGGACTACAATACACCCACCCCTATGTTGCAGGCAGTCCCGCGTGTCCGATAGTCCAGTACTTGTGGTGACCTCAAGGGTATGTCCTCGTTGCTCAGTCATATGGGAATTTACACTTTAACTGCAAATATCTACGATTTCGACGCAACACAACGGTTTCCTTCAGAAATTCAACGCAATGTCTCTTAACGAATTTCAATAAAGATATTGACGTCAAACTTGCGATGTATCGCAGTGATATACAGTTGGACATTTTTGTTGAAATTATATAGATAGAATGCGCGCGAGGTCCCTTGAAACAAGCATGCTGCTTTAGCAGTCAAAAGAGATCGTCCTGCGGCCGAACTTCTCCGTGGTTACTCGATGCTTTGGCGACAGACGGAAATCCGAGCGTGAGTGGAGGCCG
Unaligned ( gi|13 ): CAATCGCGGGACATATGTCCGGGACATAAGTCCCGGACTACAAATACACCCACCCCATGTTGCAGGCAGTCCCGCGTGTCCGATAGTCAGTACTTGTGTGAATCTCAGGTAGTTGTCCTCCTCAGATCATATGGGAATTTCAACTTTACTGCAAATATCTACGATTTCGACGCAACACAAAACGGTTTCCTTCAGGAAATTACGCAATGTCTAACTTAACGATTTCATAAAGATATTGAAACGTCAACTGCGATGTATCCGCAGTGAATACAGTTGGACATTTTGTTGAATATAATAAGAATGCGCGCGAGGTCTTGAACAAGCATGCTGCTTTACAGTCAAAAGAGATCGTCCTGCGCGGCCATCTCCGTGGTTACTCGACTGAATTGCGACAGACGGAAATCCGAGCGTGAGTGG
Unaligned ( gi|14 ): TATGTTGCAGGCAGTCCCGCGTGTCGATAGTCAGTACTTGTGGTGACTCTCAGGGTATGTCCTCCTCAGATCATATGGGAATTTACACTTTACTGCAAATATCTACGATTTCGACGCAACAACAAACGGTTTCCTTCAGGAAATTACGCAATGTCTAACTTAACGAATTTCAATAAAGATATTGAAACGTCAACTGCAGATGTATCCGCAGTGAATACAGTTGGACATTTTGTTGAATTATATAATAAGAATGCGCGCGAGGTCTTGAAACAAGCATGCTGCTTTACAGTCAAAAGAGATCGTCCTGCGGCCGAACTCTCCGTGGTTACTCGACTGATTGGCGACAGACGGAAATCCGAGCGTGAGTGGAGCCG
Unaligned ( gi|15 ): TCTTGCGAACTAGAAGTCCAATTCCAAACAAATCTGCTTAAGCAATGTTTGAACTCTGTGCTTCCTATTGATACGAAATCATAAACAGATCATTTTCAAAACTCAACAGGACGCACCCTCGTTGTAAGAATGCTAATGTTCGACCACTTATCAAGCGACCAATGGCTAGACAAAGACGAATGTAAGAAATTATGCGTCCGGTATCCGAATTACCGTTCTGAGGCTAAAAGTCCTTGAAAAGCCGGTAGCATCGCGATTGGACAAACACACCGCGATTATAAATGATCTGCAACG
Unaligned ( gi|17 ): TGGGGGCTTATTTTGGATGAAACTAAGCATGGAAAACATCTGTCTGCACTCTGAGTGGCCAAGTCTTGTTATTTTCCAGTTGAGGAACATAGGAAGAATCAGATACTGCCACCTATGAACTCGTTTTAACAAAACTTGAT
Unaligned ( gi|19 ): CCACGTGCAACTGCATATCACGCTTGTCACTCTACCAAACTGCTATACTACGTGTTCATCACGAGA