lowQualScore : 11111 11 22222 11 1111 11 1 111 1 1111 11 222 111 111 22222 11 444444444444444444444 1 1 1 2 111111 22 11 1 222 111 11 3 11 1111111 1 11
lowQualScore : 99 22222 5 44 88888 55 2222 8888 5 5 3 66 5 5 5 33 5 777 5 5 5 0 5 777 0 2222 44 66 0 4 1 66 88888 4 55 4 4 66 4 444 88 4 7 4 4 4 1 99 666 66 4 4 222 4 66 55555 0 55 4 4 11 2 99 4 4 55 4 111111111111111111111 4 66 2 9999 4 7 1 4 0 4 4 4 5 8 66 66 2 4 000000 66 4 88 00 11 3 000 000 5 77 5 1 3 0 5 5 5 66 0 4 00 5 5 5555555 0 0 2 77777 0 11 5 1 88
lowQualScore : .. ..... . .. ..... .. .... .... . . . .. . . . .. . ... . . . . . ... . .... .. .. . . . .. ..... . .. . . .. . ... .. . . . . . . .. ... .. . . ... . .. ..... . .. . . .. . .. . . .. . ..................... . .. . .... . . . . . . . . . . .. .. . . ...... .. . .. .. .. . ... ... . .. . . . . . . . .. . . .. . . ....... . . . ..... . .. . . ..
lowQualScore : 22 99999 7 33 44444 33 4444 0000 7 7 2 99 0 0 0 22 0 111 0 0 0 8 0 999 6 3333 55 11 9 0 6 44 33333 0 55 4 4 11 4 777 33 4 8 4 4 7 1 99 999 11 2 4 444 4 11 00000 1 55 0 0 11 3 55 0 0 55 4 888888888888888888888 4 11 6 4444 4 4 6 0 7 0 4 4 1 9 11 11 2 4 222222 00 4 99 55 99 0 000 000 0 00 0 1 2 1 0 0 0 99 0 0 55 0 0 5555555 8 1 5 22222 5 99 0 5 66
consensus : AAACCT--CTGTAG----TTT-ATG-AATT-ACG-TTGCACT-CCTTTACAGATTTTNA--CTT-A--TAAT-T-GTTAAAAATAA--T-ATA-TTG-T-AT-CGTATGTT--GAAT-TTC-TTA-CCGGT-CA-N-CTGCAACCTC--G-ATTTC-AAAT--AGACAATTTATTTCTAAGA-TTTCATC-AGGA-G---TGCAACGTTTT-TCAAA--TAG-CT-T--AATA-TTTAATTTGG-TTC-GCGTTNA-AACAA-CACANTGTGG-TGT--A--TTNAGGGCATGCCCTTGC-AATG-A-AT-CGATA--TGCATGACCCACCCAT-GACCCAACA--T-ATC-CCCCCTTTATCAA--TAAATAA-GGCAT-CAATGCTTT--CCTACGG-GAT-A---GATAGATA-ATAATTTTTAGT-GAA--TTCATA----AGGTGGGCATT-GTGCTCAAATTGATAGTC-TTTTAAA-ATA-TTTCC-AATCATATT-TG--C--ATTT-AC-A----TCTAA-ATTAATTT-TTTCGTTGAACAA--AACAGTTGAT-CCGCCACC-T-CTA-GATC-ACGAAATG-CGT-CACAC-T--AGATCAC-GAT-G-ACGTCACG--ATAATAAGTGCATCGCGATCGATG--TT-TTGCTTATATATCTG
Reference ( gi|4 ) : AAACCT--CTGTAG----TTT-ATG-GATT-GCA-TTGCATT-CCTTTACAGATTTTGA--CTT-A--TAAT-T-GTTAAAAATAA--T-ATA-TTG-T-GT-CGTATGTT--GAAT-TTC-TTA-CCAGT-CA-T-CTGCAACCTC--G-ATTTC-AAAT--AGACAATTTATTTCTAAGA-TTTCATT-AGGA-G---TACAACGTTTT-TCAAA--TAG-CT-T--AATA-TTTAATTTGG-TTC-GTGTTTA-AACAA-CACAGTGTGG-TGA--A--TTTAGGGCATGCCCTTGT-AATG-A-AT-CGATA--TGCATGACCCACCCAT-GACTCAACA--T-ATC-CCCCCTTTATCAA--TAAATAA-GGCAT-CAATGCTTT--CCTACGG-G---A---GATAGATA-ATAATTTTTAGT-GAA--TTAATA----AGGTGGGCATT-GTGCTCAAATTAATTGTC-TTTTAAA-ATA-TTTCC-AATCATATT-TG--C--A-TT-AC-A----TCTAA-ATTAATTT-TTTCATTGAACAA--AACATTTGAT-C-GCCACC-T-CTA-TATC-ACGAAATG-CGT-CACAC-T--AG-TCGC-AAT-G-ACGTCATG--ATAATAAGTGCATCGCGATCGATG--TT-TTGTTTATATATCTG
gi|3 : AAACCT--CTGTAG----TTT--TG--ATT-AGT-TTGCATTTCCTTTACAGATTTTGA--CTT-A--TAAT-T-GTTAAAA-TAA--T--TA-TTGGT-AT-CGTATGGT--GAATCTTC-TTA-C-AGT-CA-T-CTGCAACCTC----ATTTCAAAAT--AGACAATTTTTTTCTATGA-TTT-ATT-AGGA-G---TGCAACTTTTTGTCAAA--TAG-CT-T--AATA-TTT-ATTTGG-TTC-GTGTTTA-AACAA-CACAGTG-GG-TGT--A--TTCAGGGCATG-CCTTGTAAATGAA-AT-CGATA--TGCATGACCCACCCATGGACTCAACA--T-ATC-CCCCC-TTATCAAATTAAAT-A-GGCAT-C-TTGCTTTCCCCTACGG-GATAA---AATAGAT-----ATTTTTAGTGGAA--TCATTATTATAGGTGGGCA-T-GTGCTCTAATT-ATTGTC-TTTTAAATAT--TTTCC-AATCATATT-TG--C--ATTT-AC-A----TCTAA-ATTAATTT-TTT-GTTG-ACAA--AAAAATTGATAC-GCCA-C-T-CTA-GATC-ACG-AATG-CGT-CACAC-T--AGATCGCTGAT-G-ACATCATG--ATAATAAGTGCATCGTGATCG-TG--TT-TTGTTTAT-TATCTG
gi|6 : taAAACCT--CTGTA-----TTT-ATG-AATT-AT--TTGCATC-ACTTTACAGATTTTTA--CTT-A--TAAT-T--TTAAATAT----T-ATA-T-G-T-AT-CGTATGTT---AAT-TTC-TTA-CC-GT-CA-G-CTGCA-CCTC--G-ATTT--GAAT--G--CAATT---------GA-TTTCATC-AGGA-G---TACAACGTTTT-TCAA---TAG-CT-T--AATA-TTTAACTTGG-TTC-GCG-TTA-AACAA-CACAAT-TGT-TAATGA--TTTAGGGCATGCTCTTGT-AATG-C-AT-CGATA--TGCATGACCCATCCGT-GACCCA--A--T-ATC-TCCC--TTAACAA--TAAATAA-GATAT-CAA-GCTTT--CCTACGGAG---A---GATGGATG-AT-ATTTTTAGT-GAA--TTCATA----AGATGTTAACT-GTGTTCAGTTCGATAGTC-TTT--AA-ATA-TTT-C-AATCATATTGTG--C--A-TT-ACTA----TATAA-TTAAATTT-TTTTGCTG-ACAAT-GAAAT---AT-C-GCCA-C-T-CTA-GAT--ATG-AATG-GGT-CACTC-T--AGATCAC-TAT-G-A-GTCA-G--AAACGAAGTGC-TCGTGATT-ATGT-TT-TTGTTag
gi|7 : AAACCTTCCTGTAGAACTTTT-ATA-AATT-ACA-TTTCATTTCCTTTACAGATTTTAA--CTT-A--TAAT-T-GTTTAAAAAAA--A-ATA-TTG-T-TTACGTATGTT--GATT-TTC-TTA-CCGGT-CA-C-CTGCAGC-TCAAG-ATTCC-AAAT--AGGCAATTTATTTCTAA--------------------TA------TTT-TCAAA--TAG-CT-T--AATC-TT--ATTTGGGTTC-GCGTTGA-AACAA-CACAGTGTGA-TGT--A--TTTAGG-CATGCCCTTGC-ACTG-A-AT-CGATA--TGCATGACCCAC-----------ACA--T-ATC-ACCCCTT-ATCAA----AATAA-G-CG--CAATGCTTT--CCTACGG-GGT-A---GATAGACA-ATA-TCTTTAGT-GAA--TTCATA----AAGTGGGCATT-GTGCTCAAATTGATGGTCTTTTTAAA-ATATTTTCC-AATTATTTTGTG--C--GCTT-AC-G----TCCAATATCCATTT-Tgaat
gi|8 : tAAACCT--CTGTAG----TTTTATG-AATTTACG-TTGCACA-CCTTTACAGATTTTTAACCTT-AGGTAATAT-GTTAAAAACAA--TTATA-TTG-T-AT-CGTATGTCTCAAAT-TTC-TT--CC-GT-CAAG-CTGCACCCGG--GGATTTCTAAATTAAAACAATTTATTTTTAAGA-TT-CATC-AAGTTG---TACAACGTTTT-TCAAAAATAGGCT-T--AAAT-TTTATTTTGG-TTC-GCGTTAA-AACAA-CACATT-TG--TGA--AGTTTTAGGGCATGTC--TGT-AATG----T-CGATAAATGC-TGACCCGCCCAT--ACCCAACA--T-ACC-CCCC--TTATCAA--TAAATAA-GGCAT-CAATGCTTT--C
gi|1 : CTT--CTGTAG----TTT-ATG-GAT--ACGGTTGCACT-C-TTTACAGATTTTGA--CTTTA--TAAT-TTGTTAAAAATGAATT-ATAATTG-T-AT-CGTATGTT--GAAT-TTCCTTA-CCAGTTCA-TTCTGCAACCTC--G-ATTTC-AA-T--AGACAATTTATTTCTATGAATTTCATT-AGGA-G---TGCAACGTTTT-TCAAA--T-G-CTGT--AATA-TTTA-TTTG--TTC-GTGTTTC-AACAAACAC-GTGTGG-TGT--A--TTCAGGGC-CGCCCTTGT-A-TG-A-AT-CGATA--AGCATGACCCACCCAT-GA-TCAACAAAT-ATC-CCCCCTT-ATCAAA-TAAATAA-GGCAT-CAATGGCTT--CCTACGG-G-------GATAAATAGATAATATTTAGT-GAAATTTTATA----AGGTGGGCATTTGTGCTCAAAT-AATTGTC-TTTTAAT-A-A-TTTCC-AATCAATTT-TG--CTCA-TT-AC-A----TCTAA--TTAATTT-TTTGTTTGA-CAA--AACAATTGAT-CCGCCACC-TTCTAGTATC-ACGAA-TG-CGTTCACAC-T--AGATCAC-GAT-G-ACGTCATG--ATAATAAGTGCCTCGTGATCGATGTTTT-TTGTTTA-ATATCTG
gi|5 : acT--CTGTAC----TTT-ATG-AATT-ACG-TTGCACT-CCGTTGCTGATTTT------------AAT-T-GTTAAAA-TAA--T-ATA-TTT-T-AT-CATATGTT--AAAT-TTC-TTA-CCGGT-CA-G-CTG-GACCTC--G-ATTTC-AAAT--AGGCAAATTATTTCTAAGA-TTTCATC-TGGG-G---TACAACGTTTT-TCAAA--TAG-CT-T--AATA-TTTA-TTTGG-TTC-GCGTTAA-AACAA-CACATTGTGA-TGT--T--TTCAGGGCATGCCCTTGC-AATG-A-AT-TGATA--TGCATGACCCACCCAT-GACCCAACA--T-A---CCCCCCTTATCAA--TAAGTAG-GGCAT-CAATGCTTT--CCTACGG-G---A--------------------TAGT-GAA--TGCATA----AGGTGTGAATT-GTGCTCAAATTGATAGTC-GTTT-AA-ATA-TTTCC-AATCATATT-TG--C--ATTT-AC-ATCATTCTAA-ATTAATCT-TTTCGTTGACAAA--AACAATTCATCC-GCCACC-T-GTA-GATC-ACGAAATG-CGT-----------A-TCAC-GAT-G-ACGTCACGTCATGATA----CCT-------AATG--TT-TTGCTTATAaggg
gi|2 : aataTGTAG----TTT-AAGCAATT-TTC-TTGTAT--CCTTTACAGATTTTTA--TCT-A--TA-T-T-GTTAAAAATAA--T-ATA-TTG-C-CT-TGT-TTTT--GAAT-TTC-TTAACTGGT-CA-A-CTGCA-TTTT--A-ATTT--AGAT--GGACA-TTAATTTCTAA---TTCCATTCAGGA-AAGTTGCAACACTT---CAAA--TAG-GT-TTAAATA-TT--ATTTG--TCCAGTGTT-A-AAAAA-CACATTGTTGCTGT--A--TCAAAGGAATGCCCT-GC-AATA-ACATTCGATA--TGCAATAGCCACCCAT-------ACA--TTATTGCCTCCTTTTCCAA--TAAATAAAGGCATTCAATGCTTT--CTAACGG-G---ATACAATAGA-A-ATA--TTTTAGT-GAA--TCCATA----ATGTGGGCATT-GTGCTGAAGTTGATAGTG-TTTTTAA-ATA-TCTCCAAAACAATTT-TGCCC--A-TT-AC-T----TCTAA-ATTAATTTCTTTTGTTTGACAA--AACAGTTGATCC-GCCACCTT-CCA-GATCAATGAAATGACA--CACACTT--AGATCAC-GATCG-ACGTCATG--ATAGCAAGTCCA-CGCAATGAATG--TTCTTGCTTATATAcagaggg
gi|15 : taAAATAA--T-ATA-TTG-TTAT-CTTATGTT--GAAT-TTC-TTA-CCGGT-CA-gtcgagg
gi|9 : tttataatacgttgtaaccactacagctgcagatataactattttataaaaaaaatattg-ATTTG-AAAT--GAATAATTTATTTCTAAGA-TCTAACC-AGGA-A---CGCAGCACTTT-TCAAA--TGT-CT-T--AACA-TTT-CTTTGG-TTC-ACGTTAA-AATAT-CCCAATGTGA-CGC--A--TTGGGGGTATACCCTTGC-AATA-A-AG-TGATT--TGTATGGCCCACT-----------CA--T-ATT-CCCCCTTC-TCAA--TAAACAA-AGAAT-TAATGC-AT--CCTACGG-GAC-A---AATAGATA-ACA--TTTCAGT-GAA--TTCATA----AGGTAGGGTTT-ATTCTTAAATTAATAGTT-CTTTAAA-ac
gi|13 : aacttgcatttgaaacaaagaatctcattggctgattcaattgtagcattttta-AAAT--AAATAATTTACTTCCAAGA-TTTTATC-TGGA-A---TGAAACACCTT-TCGCA--TAG-CT-A--AATAATTT--TTTGT-TTC-AT-TTTAGAATAA-CTCATTGTGA-TGC--A--CTGAGAGCATGTCCTTGT--ATGAA-AT-CGATT--TGTATGACta
gi|16 : GA-TTTCATC-AGGA-G---TACAACGTTTT-TCAAA--
gi|10 : CA--T-ATG-GCCCCCTTATAAA--TAAATAA-GGCAT-CAATGCTTT--CCTATGG-AAT-A---GATAGAAA-CTA--TTTTAGT-GAA--TTCATA----AGTTGGGCATT-GTGCTAAAATTCATATTC-TTTT-AA-ATA-TCTCC-AAACATATT-TC--C--ATTT-AC-A-----------------T-TTTCGTTT-ACAA--AAGAGTTGAT-C---------------ATT----AAATG-CGT-CGCAC-T--AGATCAC-AAT-G-GCGTCA-------------------CGATCAATG--TT-TTACTTATA
gi|12 : ccCA--T-ATC-CCCC--TTATCAA--TAAATAA-GTCAT-CACTGCTTT--CGTATGG-GAT-A---GATAGGCA-AT-ATTTTT-GT-GAA--TTCATA----AGGTAGGCATT-GTGCTCCAATTGATAATC-TTTT-AG-ATA-TTTCA-AA-CATATT-TC--C--ATTT-AC-A----TATAA-
gi|11 : ATAGTC-TTTTAAA--TA-GCTGC-AAATATATT-TT--C--A-TTTAT-T----TGTAA-ATTAATTT-T--CATTGA-CAAGAAACAATTGAT-CCGACACA-T-CCA-GATC-ATTAAATG-TGT-CAGAT-T--AT-CCAC-GAT-G-ACGTCATG--AT-ATAAGTGCATCG-GATC-ATG---A-TTGCTTA---ATCT
gi|14 : -A----TCTCA-ATTA-TTT-TTTCGTAGACAAA--AACAGTTGAT-CCGCAAAC-T-CTA-GATC-ATGA-------T-CAAAC-TCTAGATCAT-GAT-ATGCGTCAC------ACAAGTTCATCGCGATCAATG--TT-TTGGTTACATATactcgggcgtc
Alignments
lowQualScore : 11111 111 111 1111111 222 1111 111 1111
lowQualScore : 77 9999 4 4 1 4 99 9999 2 8 4 5 66 9999 4 66 55555 4 7 66 4 4 4 4 4 66 4 4 4 1 4 99 7 777 9999 77 4 55 3 2 3 66666 3 55 4 4 55 4 999 66 4 4 4 4 1 4 4 4 1 1 4 000 4 55 8888888 3 3 88 1 88 3 3 55 7777 4 3 666 55 4 8888 4 2 3 8 0 8 4 3 8 99 55 7777 3 2 3 4 4 4 3333 66 5 0 111 4 4 7 4 4 66 4 1 4 4 4 4444 3 1 4 3 8 66 4 55
lowQualScore : .. .... . . . . .. .... . . . . .. .... . .. ..... . . .. . . . . . .. . . . . . .. . ... .... .. . .. . . . ..... . .. . . .. . ... .. . . . . . . . . . . . ... . .. ....... . . .. . .. . . .. .... . . ... .. . .... . . . . . . . . . .. .. .... . . . . . . .... .. . . ... . . . . . .. . . . . . .... . . . . . .. . ..
lowQualScore : 99 4444 4 4 9 4 11 4444 7 9 4 3 11 4444 4 11 66666 4 3 11 4 4 4 4 4 11 4 4 4 1 0 00 9 888 7777 99 0 55 6 8 6 66666 6 00 0 0 55 0 555 55 0 9 0 0 0 0 0 0 5 0 0 333 0 55 2222222 6 6 44 3 66 6 6 00 6666 0 9 555 55 0 5555 0 3 6 9 8 0 0 7 0 55 55 7777 6 0 6 0 0 7 1111 11 4 1 111 4 4 3 4 4 11 4 9 4 4 4 4444 4 1 4 7 2 11 4 22
consensus : AAACCT--CTGTAG----TTT-ATG-AATT-ACG-TTG----CACT-CC-TTTACAGATTTTNA--CT----T-A--TAAT-----T-GTTAAAAATAA--T-ATA-TTG-T-AT-CGTATGTT--GAAT-TTC-TTA-CCGGT-CAN-CTGCAAC---CTC--G-ATTTC-AAA-T--AGACAATTTATTTCTAAGA-TTTCAT-CAGGA-G---TGCAACGTTTT-TCAAA--TAG-CT-T--AAT-ATTTAATTTGG-TTC-GCGTTAAAACAA-CAC-ANT-G-TGA-TGTATTNAGGGCATGCCCTTGT-AATG-A-AT-CGATA--TGCATGACCCACCCAT-GACC--CAACAT-ATC-CCCCCTTTATCAA--TAAATAA-GGCAT-CAATGCTTT--CCTACGGG-AT-A-GATAGATAATAATTTTTAGTGAA--TTCA-TA----AGGTGGGCA-TTGTGCTCAAATTGATAGTC-TTTTAAAATA-TTTCC-AATCATATT-TGCAT--T--TACA----TCTAA-ATT-AATTT-TTTCGTTG--AACAA--AACAGTTGATCCGCCACC-TCTAG-ATC-ACGAAATG-CG-TCACA--C-TAGATCAC-GAT-G-ACGTCACG--ATAATAAGTGCATCGCGATCGATG--TT-TTGCTTATATATCTG
Reference ( family-1152 ) : AAACCT--CTGTAG----TTT-ATG-AATT-ACG-TTG----CACT-CC-TTTACAGATTTTNA--CT----T-A--TAAT-----T-GTTAAAAATAA--T-ATA-TTG-T-AT-CGTATGTT--GAAT-TTC-TTA-CCGGT-CAN-CTGCAAC---CTC--G-ATTTC-AAA-T--AGACAATTTATTTCTAAGA-TTTCAT-CAGGA-G---TGCAACGTTTT-TCAAA--TAG-CT-T--AAT-ATTTAATTTGG-TTC-GCGTTNAAACAA-CAC-ANT-G-TGG-TGTATTNAGGGCATGCCCTTGC-AATG-A-AT-CGATA--TGCATGACCCACCCAT-GACC--CAACAT-ATC-CCCCCTTTATCAA--TAAATAA-GGCAT-CAATGCTTT--CCTACGGG-AT-A-GATAGATAATAATTTTTAGTGAA--TTCA-TA----AGGTGGGCA-TTGTGCTCAAATTGATAGTC-TTTTAAAATA-TTTCC-AATCATATT-TGCAT--T--TACA----TCTAA-ATT-AATTT-TTTCGTTG--AACAA--AACAGTTGATCCGCCACC-TCTAG-ATC-ACGAAATG-CG-TCACA--C-TAGATCAC-GAT-G-ACGTCACG--ATAATAAGTGCATCGCGATCGATG--TT-TTGCTTATATATCTG
gi|1 : CTT--CTGTAG----TTT-ATG-GAT--ACGGTTG----CACT-C--TTTACAGATTTTGA--CT----TTA--TAAT-----TTGTTAAAAATGAATT-ATAATTG-T-AT-CGTATGTT--GAAT-TTCCTTA-CCAGTTCATTCTGCAAC---CTC--G-ATTTC-AA--T--AGACAATTTATTTCTATGAATTTCAT-TAGGA-G---TGCAACGTTTT-TCAAA--T-G-CTGT--AAT-ATTTA-TTTG--TTC-GTGTTTCAACAAACAC--GT-G-TGG-TGTATTCAGGGC-CGCCCTTGT-A-TG-A-AT-CGATA--AGCATGACCCACCCAT-GATCAACAA-AT-ATC-CCCCCTT-ATCAAA-TAAATAA-GGCAT-CAATGGCTT--CCTACGGGGAT-A-AATAGATAATA---TTTAGTGAAATTTTA-TA----AGGTGGGCATTTGTGCTCAAA-TAATTGTC-TTTTAATA-A-TTTCC-AATCAATTT-TGC-TCAT--TACA----TCT-A-ATT-AATTT-TTT-GTTT--GACAA--AACAATTGATCCGCCACCTTCTAGTATC-ACG-AATG-CGTTCACA--C-TAGATCAC-GAT-G-ACGTCATG--ATAATAAGTGCCTCGTGATCGATGTTTT-TTGTTTA-ATATCTG
gi|10 : acCAT-ATG-GCCCCCTTATAAA--TAAATAA-GGCAT-CAATGCTTT--CCTATGGA-AT-A-GATAGAAACTA--TTTTAGTGAA--TTCA-TA----AGTTGGGCA-TTGTGCTAAAATTCATATTC-TTTTAAA-TA-TCTCC-AAACATATT-TCCAT--T--TACA----T---------------TTTCGTTT--A-CAA--AAGAGTTGATC--------------ATT----AAATG-CG-TCGCA--C-TAGATCAC-AAT-G-GCGTCA-------------------CGATCAATG--TT-TTACTTATAaggg
gi|11 : ccATAGTC-TTTTAAA-TA-GCTGC-AAATATATT-TTCAT--T--TATT----TGTAA-ATT-AATTT-T--CATTG--A-CAAGAAACAATTGATCCGACACA-TCCAG-ATC-ATTAAATG-TG-TCAGA--T-TAT-CCAC-GAT-G-ACGTCATG--AT-ATAAGTGCATCG-GATC-ATG---A-TTGCTTA---ATCT
gi|12 : CAT-ATC-CCCC--TTATCAA--TAAATAA-GTCAT-CACTGCTTT--CGTATGGG-AT-A-GATAGGCAAT-ATTTTT-GTGAA--TTCA-TA----AGGTAGGCA-TTGTGCTCCAATTGATAATC-TTTT-AGATA-TTTCA-AA-CATATT-TCCAT--T--TACA----TATAA-actcgggcgtc
gi|13 : -AAA-T--AAATAATTTACTTCCAAGA-TTTTAT-CTGGA-A---TGAAACACCTT-TCGCA--TAG-CT-A--AATAATTT--TTTGT-TTC-ATTTTAGAATAA-CTC-ATT-G-TGA-TGCACTGAGAGCATGTCCTTGT--ATGAA-AT-CGATT--TGTATGAC
gi|14 : A----TCTCA-ATT-A-TTT-TTTCGTAG--ACAAA--AACAGTTGATCCGCAAAC-TCTAG-ATC-ATGA--------TCAAACTC-TAGATCAT-GAT-ATGCGTCAC------ACAAGTTCATCGCGATCAATG--TT-TTGGTTACATAT
gi|15 : ----TTT-ATA-A--T-ACG-TTGTAACCACT-ACAGCTGCAGATAT-AA--CTATTTT-A--TAAAAAAAAT-ATTGAAA-TAA--T-ATA-TTG-TTAT-CTTATGTT--GAAT-TTC-TTA-CCGGT-CAA-Caa
gi|16 : GA-TTTCAT-CAGGA-G---TACAACGTTTT-TCAAA--
gi|2 : TGTAG----TTT-AAGCAATT-TTC-TTG----TA-T-CC-TTTACAGATTTTTA--TC----T-A--TA-T-----T-GTTAAAAATAA--T-ATA-TTG-C-CT-TGT-TTTT--GAAT-TTC-TTAACTGGT-CAA-CTGCA-T---TTT--A-ATTT--AGA-T--GGACA-TTAATTTCTAA---TTCCATTCAGGA-AAGTTGCAACACTT---CAAA--TAG-GT-TTAAAT-ATT--ATTTG--TCCAGTGTTAAAA-AA-CAC-ATT-G-TTGCTGTATCAAAGGAATGCCCT-GC-AATA-ACATTCGATA--TGCAATAGCCACCCAT---------ACATTATTGCCTCCTTTTCCAA--TAAATAAAGGCATTCAATGCTTT--CTAACGGG-AT-ACAATAGA-AATA--TTTTAGTGAA--TCCA-TA----ATGTGGGCA-TTGTGCTGAAGTTGATAGTG-TTTTTAAATA-TCTCCAAAACAATTT-TGCCCA-T--TACT----TCTAA-ATT-AATTTCTTTTGTTT--GACAA--AACAGTTGATCCGCCACCTTCCAG-ATCAATGAAATGACA--CACA--CTTAGATCAC-GATCG-ACGTCATG--ATAGCAAGTCCA-CGCAATGAATG--TTCTTGCTTATATA
gi|3 : taAAACCT--CTGTAG----TTT--TG-A-TT-AGT-TTG----CATTTCC-TTTACAGATTTTGA--CT----T-A--TAAT-----T-GTTAAAA-TAA--T--TA-TTGGT-AT-CGTATGGT--GAATCTTC-TTA-C-AGT-CAT-CTGCAAC---CTC----ATTTC-AAAAT--AGACAATTTTTTTCTATGA-TTT-AT-TAGGA-G---TGCAACTTTTTGTCAAA--TAG-CT-T--AAT-ATTT-ATTTGG-TTC-GTGTTTAAACAA-CAC-AGT-G--GG-TGTATTCAGGGCATG-CCTTGTAAATGAA-AT-CGATA--TGCATGACCCACCCATGGACT--CAACAT-ATC-CCCCC-TTATCAAATTAAAT-A-GGCAT-C-TTGCTTTCCCCTACGGG-ATAA-AATAGAT----ATTTTTAGTGGA--ATCATTATTATAGGTGGGCA--TGTGCTCTAATT-ATTGTC-TTTT-AAATATTTTCC-AATCATATT-TGCAT--T--TACA----TCTAA-ATT-AATTT-TTT-GTTG---ACAA--AAAAATTGATACGCCA-C-TCTAG-ATC-ACG-AATG-CG-TCACA--C-TAGATCGCTGAT-G-ACATCATG--ATAATAAGTGCATCGTGATCG-TG--TT-TTGTTTAT-TATCTGgtcgagg
gi|4 : taAAACCT--CTGTAG----TTT-ATG-GATT-GCA-TTG----CATT-CC-TTTACAGATTTTGA--CT----T-A--TAAT-----T-GTTAAAAATAA--T-ATA-TTG-T-GT-CGTATGTT--GAAT-TTC-TTA-CCAGT-CAT-CTGCAAC---CTC--G-ATTTC-AAA-T--AGACAATTTATTTCTAAGA-TTTCAT-TAGGA-G---TACAACGTTTT-TCAAA--TAG-CT-T--AAT-ATTTAATTTGG-TTC-GTGTTTAAACAA-CAC-AGT-G-TGG-TGAATTTAGGGCATGCCCTTGT-AATG-A-AT-CGATA--TGCATGACCCACCCAT-GACT--CAACAT-ATC-CCCCCTTTATCAA--TAAATAA-GGCAT-CAATGCTTT--CCTACGGG----A-GATAGATAATAATTTTTAGTGAA--TTAA-TA----AGGTGGGCA-TTGTGCTCAAATTAATTGTC-TTTTAAAATA-TTTCC-AATCATATT-TGCA---T--TACA----TCTAA-ATT-AATTT-TTTCATTG--AACAA--AACATTTGAT-CGCCACC-TCTAT-ATC-ACGAAATG-CG-TCACA--C-TAG-TCGC-AAT-G-ACGTCATG--ATAATAAGTGCATCGCGATCGATG--TT-TTGTTTATATATCTGag
gi|5 : T--CTGTAC----TTT-ATG-AATT-ACG-TTG----CACT-CC-GTTGCTGATTTT----------------AAT-----T-GTTAAAA-TAA--T-ATA-TTT-T-AT-CATATGTT--AAAT-TTC-TTA-CCGGT-CAG-CTG-GAC---CTC--G-ATTTC-AAA-T--AGGCAAATTATTTCTAAGA-TTTCAT-CTGGG-G---TACAACGTTTT-TCAAA--TAG-CT-T--AAT-ATTTA-TTTGG-TTC-GCGTTAAAACAA-CAC-ATT-G-TGA-TGTTTTCAGGGCATGCCCTTGC-AATG-A-AT-TGATA--TGCATGACCCACCCAT-GACC--CAACAT-A---CCCCCCTTATCAA--TAAGTAG-GGCAT-CAATGCTTT--CCTACGGG-A--------------------TAGTGAA--TGCA-TA----AGGTGTGAA-TTGTGCTCAAATTGATAGTC-GTTT-AAATA-TTTCC-AATCATATT-TGCAT--T--TACATCATTCTAA-ATT-AATCT-TTTCGTTG--ACAAA--AACAATTCATCCGCCACC-TGTAG-ATC-ACGAAATG-CG-T-----------ATCAC-GAT-G-ACGTCACGTCATGATA----CCT-------AATG--TT-TTGCTTATA
gi|6 : aataAAACCT--CTGTA-----TTT-ATG-AATT-AT--TTG----CATC-AC-TTTACAGATTTTTA--CT----T-A--TAAT-----T--TTAAATAT----T-ATA-T-G-T-AT-CGTATGTT---AAT-TTC-TTA-CCG-T-CAG-CTGCA-C---CTC--G-ATTT--GAA-T--G--CAATT---------GA-TTTCAT-CAGGA-G---TACAACGTTTT-TCAA---TAG-CT-T--AAT-ATTTAACTTGG-TTC-GCGTT-AAACAA-CACAATT-GTTAA-TG-ATTTAGGGCATGCTCTTGT-AATG-C-AT-CGATA--TGCATGACCCATCCGT-GACC--CA--AT-ATC-TCCC--TTAACAA--TAAATAA-GATAT-CAA-GCTTT--CCTAC-GG-AG-A-GATGGATGAT-ATTTTTAGTGAA--TTCA-TA----AGATGTTAA-CTGTGTTCAGTTCGATAGTC-TTT--AAATA-TTT-C-AATCATATTGTGCAT--TACTATA----T---A-ATTAAATTT-TTTTGCTGACAATGA--AATA------TCGCCA-C-TCTAG-AT--ATG-AATG-GG-TCACT--C-TAGATCAC-TAT-G-A-GTCA-G--AAACGAAGTGC-TCGTGATT-ATG--TT-TTcagaggg
gi|7 : AAACCTTCCTGTAGAACTTTT-ATA-AATT-ACA-TTT----CATTTCC-TTTACAGATTTTAA--CT----T-A--TAAT-----T-GTTTAAAAAAA--A-ATA-TTG-T-TTACGTATGTT--GATT-TTC-TTA-CCGGT-CAC-CTGCAGC----TCAAG-ATTCC-AAA-T--AGGCAATTTATTTCTAATA-TTT--------------------------TCAAA--TAG-CT-T--AAT-CTT--ATTTGGGTTC-GCGTTGAAACAA-CAC-AGT-G-TGA-TGTATTTAGG-CATGCCCTTGC-ACTG-A-AT-CGATA--TGCATGACCCAC-------------ACAT-ATC-ACCCCTT-ATCAA----AATAA-G-CG--CAATGCTTT--CCTACGGG-GT-A-GATAGACAATA-TCTTTAGTGAA--TTCA-TA----AAGTGGGCA-TTGTGCTCAAATTGATGGTCTTTTTAAAATATTTTCC-AATTATTTTGTGCGC--T--TACG----TCCAATATC-CATTT-Ttgttgaat
gi|8 : tAAACCT--CTGTAG----TTTTATG-AATTTACG-TTG----CACA-CC-TTTACAGATTTTTAACCT----T-AGGTAATA----T-GTTAAAAACAA--TTATA-TTG-T-AT-CGTATGTCTCAAAT-TTC-TT--CCG-T-CAAGCTGCACC---CGG--GGATTTCTAAA-TTAAAACAATTTATTTTTAAGA-TT-CAT-CAAGTTG---TACAACGTTTT-TCAAAAATAGGCT-T--AAA-TTTTATTTTGG-TTC-GCGTTAAAACAA-CAC-ATTTG-TGA-AGT-TTTAGGGCATGTC--TGT-AATG----T-CGATAAATGC-TGACCCGCCCAT--ACC--CAACAT-ACC-CCCC--TTATCAA--TAAATAA-GGCAT-CAATGCTTT--C
gi|9 : T-CAA-TTGTAGCATTTTT--A-ATTTG-AAA-T--GAATAATTTATTTCTAAGA-TCTAAC-CAGGA-A---CGCAGCACTTT-TCAAA--TGT-CT-T--AAC-ATTTC-TTTGG-TTC-ACGTTAAAATAT-CCC-AAT-G-TGA-CGCATTGGGGGTATACCCTTGC-AATA-A-AG-TGATT--TGTATGGCCCACT-------------CAT-ATT-CCCCCTTC-TCAA--TAAACAA-AGAAT-TAATGC-AT--CCTACGGG-AC-A-AATAGATAACA--TTTCAGTGAA--TTCA-TA----AGGTAGGGT-TTATTCTTAAATTAATAGTT-CTTTAAA
Alignments
lowQualScore : 11111 111 111 1111111 222 1111 111 1111
lowQualScore : 77 9999 4 4 1 4 99 9999 2 8 4 5 66 9999 4 66 55555 4 7 66 4 4 4 4 4 66 4 4 4 1 4 99 7 777 9999 77 4 55 3 2 3 66666 3 55 4 4 55 4 999 66 4 5 4 4 1 4 4 4 1 1 4 000 4 55 8888888 3 3 88 1 88 3 3 55 7777 4 3 666 55 4 8888 4 2 3 8 0 8 4 3 8 99 55 7777 3 2 3 4 4 4 3333 66 5 0 111 4 4 7 4 4 66 4 1 4 4 4 4444 3 1 4 3 8 66 4 55
lowQualScore : .. .... . . . . .. .... . . . . .. .... . .. ..... . . .. . . . . . .. . . . . . .. . ... .... .. . .. . . . ..... . .. . . .. . ... .. . . . . . . . . . . . ... . .. ....... . . .. . .. . . .. .... . . ... .. . .... . . . . . . . . . .. .. .... . . . . . . .... .. . . ... . . . . . .. . . . . . .... . . . . . .. . ..
lowQualScore : 99 4444 4 4 9 4 11 4444 7 9 4 3 11 4444 4 11 66666 4 3 11 4 4 4 4 4 11 4 4 4 1 0 00 9 888 7777 99 0 55 6 8 6 66666 6 00 0 0 55 0 555 55 0 2 0 0 0 0 0 0 5 0 0 333 0 55 2222222 6 6 44 3 66 6 6 00 6666 0 9 555 55 0 5555 0 3 6 9 8 0 0 7 0 55 55 7777 6 0 6 0 0 7 1111 11 4 1 111 4 4 3 4 4 11 4 9 4 4 4 4444 4 1 4 7 2 11 4 22
consensus : AAACCT--CTGTAG----TTT-ATG-AATT-ACG-TTG----CACT-CC-TTTACAGATTTTNA--CT----T-A--TAAT-----T-GTTAAAAATAA--T-ATA-TTG-T-AT-CGTATGTT--GAAT-TTC-TTA-CCGGT-CAN-CTGCAAC---CTC--G-ATTTC-AAA-T--AGACAATTTATTTCTAAGA-TTTCAT-CAGGA-G---TGCAACGTTTT-TCAAA--TAG-CT-T--AATA-TTTAATTTGG-TTC-GCGTTAAAACAA-CAC-ANT-G-T-GATGTATTNAGGGCATGCCCTTGT-AATG-A-AT-CGATA--TGCATGACCCACCCAT-GACC--CAACAT-ATC-CCCCCTTTATCAA--TAAATAA-GGCAT-CAATGCTTT--CCTACGGG-AT-A-GATAGATAATAATTTTTAGTGAA--TTCA-TA----AGGTGGGCA-TTGTGCTCAAATTGATAGTC-TTTTAAAATA-TTTCC-AATCATATT-TGCAT--T--TACA----TCTAA-ATT-AATTT-TTTCGTTG--AACAA--AACAGTTGATCCGCCACC-TCTAG-ATC-ACGAAATG-CG-TCACA--C-TAGATCAC-GAT-G-ACGTCACG--ATAATAAGTGCATCGCGATCGATG--TT-TTGCTTATATATCTG
Reference ( family-1152 ) : AAACCT--CTGTAG----TTT-ATG-AATT-ACG-TTG----CACT-CC-TTTACAGATTTTNA--CT----T-A--TAAT-----T-GTTAAAAATAA--T-ATA-TTG-T-AT-CGTATGTT--GAAT-TTC-TTA-CCGGT-CAN-CTGCAAC---CTC--G-ATTTC-AAA-T--AGACAATTTATTTCTAAGA-TTTCAT-CAGGA-G---TGCAACGTTTT-TCAAA--TAG-CT-T--AATA-TTTAATTTGG-TTC-GCGTTAAAACAA-CAC-ANT-G-T-GATGTATTNAGGGCATGCCCTTGT-AATG-A-AT-CGATA--TGCATGACCCACCCAT-GACC--CAACAT-ATC-CCCCCTTTATCAA--TAAATAA-GGCAT-CAATGCTTT--CCTACGGG-AT-A-GATAGATAATAATTTTTAGTGAA--TTCA-TA----AGGTGGGCA-TTGTGCTCAAATTGATAGTC-TTTTAAAATA-TTTCC-AATCATATT-TGCAT--T--TACA----TCTAA-ATT-AATTT-TTTCGTTG--AACAA--AACAGTTGATCCGCCACC-TCTAG-ATC-ACGAAATG-CG-TCACA--C-TAGATCAC-GAT-G-ACGTCACG--ATAATAAGTGCATCGCGATCGATG--TT-TTGCTTATATATCTG
gi|1 : CTT--CTGTAG----TTT-ATG-GAT--ACGGTTG----CACT-C--TTTACAGATTTTGA--CT----TTA--TAAT-----TTGTTAAAAATGAATT-ATAATTG-T-AT-CGTATGTT--GAAT-TTCCTTA-CCAGTTCATTCTGCAAC---CTC--G-ATTTC-AA--T--AGACAATTTATTTCTATGAATTTCAT-TAGGA-G---TGCAACGTTTT-TCAAA--T-G-CTGT--AATA-TTTA-TTTG--TTC-GTGTTTCAACAAACAC--GT-G-T-GGTGTATTCAGGGC-CGCCCTTGT-A-TG-A-AT-CGATA--AGCATGACCCACCCAT-GATCAACAA-AT-ATC-CCCCCTT-ATCAAA-TAAATAA-GGCAT-CAATGGCTT--CCTACGGGGAT-A-AATAGATAATA---TTTAGTGAAATTTTA-TA----AGGTGGGCATTTGTGCTCAAA-TAATTGTC-TTTTAATA-A-TTTCC-AATCAATTT-TGC-TCAT--TACA----TCT-A-ATT-AATTT-TTT-GTTT--GACAA--AACAATTGATCCGCCACCTTCTAGTATC-ACG-AATG-CGTTCACA--C-TAGATCAC-GAT-G-ACGTCATG--ATAATAAGTGCCTCGTGATCGATGTTTT-TTGTTTA-ATATCTG
gi|10 : acCAT-ATG-GCCCCCTTATAAA--TAAATAA-GGCAT-CAATGCTTT--CCTATGGA-AT-A-GATAGAAACTA--TTTTAGTGAA--TTCA-TA----AGTTGGGCA-TTGTGCTAAAATTCATATTC-TTTTAAA-TA-TCTCC-AAACATATT-TCCAT--T--TACA----T---------------TTTCGTTT--A-CAA--AAGAGTTGATC--------------ATT----AAATG-CG-TCGCA--C-TAGATCAC-AAT-G-GCGTCA-------------------CGATCAATG--TT-TTACTTATAaggg
gi|11 : ccATAGTC-TTTTAAA-TA-GCTGC-AAATATATT-TTCAT--T--TATT----TGTAA-ATT-AATTT-T--CATTG--A-CAAGAAACAATTGATCCGACACA-TCCAG-ATC-ATTAAATG-TG-TCAGA--T-TAT-CCAC-GAT-G-ACGTCATG--AT-ATAAGTGCATCG-GATC-ATG---A-TTGCTTA---ATCT
gi|12 : CAT-ATC-CCCC--TTATCAA--TAAATAA-GTCAT-CACTGCTTT--CGTATGGG-AT-A-GATAGGCAAT-ATTTTT-GTGAA--TTCA-TA----AGGTAGGCA-TTGTGCTCCAATTGATAATC-TTTT-AGATA-TTTCA-AA-CATATT-TCCAT--T--TACA----TATAA-actcgggcgtc
gi|13 : -AAA-T--AAATAATTTACTTCCAAGA-TTTTAT-CTGGA-A---TGAAACACCTT-TCGCA--TAG-CT-A--AATAATTT--TTTGT-TTC-ATTTTAGAATAA-CTC-ATT-G-T-GATGCACTGAGAGCATGTCCTTGT--ATGAA-AT-CGATT--TGTATGAC
gi|14 : A----TCTCA-ATT-A-TTT-TTTCGTAG--ACAAA--AACAGTTGATCCGCAAAC-TCTAG-ATC-ATGA--------TCAAACTC-TAGATCAT-GAT-ATGCGTCAC------ACAAGTTCATCGCGATCAATG--TT-TTGGTTACATAT
gi|15 : ----TTT-ATA-A--T-ACG-TTGTAACCACT-ACAGCTGCAGATAT-AA--CTATTTT-A--TAAAAAAAAT-ATTGAAA-TAA--T-ATA-TTG-TTAT-CTTATGTT--GAAT-TTC-TTA-CCGGT-CAA-Caa
gi|16 : GA-TTTCAT-CAGGA-G---TACAACGTTTT-TCAAA--
gi|2 : TGTAG----TTT-AAGCAATT-TTC-TTG----TA-T-CC-TTTACAGATTTTTA--TC----T-A--TA-T-----T-GTTAAAAATAA--T-ATA-TTG-C-CT-TGT-TTTT--GAAT-TTC-TTAACTGGT-CAA-CTGCA-T---TTT--A-ATTT--AGA-T--GGACA-TTAATTTCTAA---TTCCATTCAGGA-AAGTTGCAACACTT---CAAA--TAG-GT-TTAAATA-TT--ATTTG--TCCAGTGTTAAAA-AA-CAC-ATT-G-TTGCTGTATCAAAGGAATGCCCT-GC-AATA-ACATTCGATA--TGCAATAGCCACCCAT---------ACATTATTGCCTCCTTTTCCAA--TAAATAAAGGCATTCAATGCTTT--CTAACGGG-AT-ACAATAGA-AATA--TTTTAGTGAA--TCCA-TA----ATGTGGGCA-TTGTGCTGAAGTTGATAGTG-TTTTTAAATA-TCTCCAAAACAATTT-TGCCCA-T--TACT----TCTAA-ATT-AATTTCTTTTGTTT--GACAA--AACAGTTGATCCGCCACCTTCCAG-ATCAATGAAATGACA--CACA--CTTAGATCAC-GATCG-ACGTCATG--ATAGCAAGTCCA-CGCAATGAATG--TTCTTGCTTATATA
gi|3 : taAAACCT--CTGTAG----TTT--TG-A-TT-AGT-TTG----CATTTCC-TTTACAGATTTTGA--CT----T-A--TAAT-----T-GTTAAAA-TAA--T--TA-TTGGT-AT-CGTATGGT--GAATCTTC-TTA-C-AGT-CAT-CTGCAAC---CTC----ATTTC-AAAAT--AGACAATTTTTTTCTATGA-TTT-AT-TAGGA-G---TGCAACTTTTTGTCAAA--TAG-CT-T--AATA-TTT-ATTTGG-TTC-GTGTTTAAACAA-CAC-AGT-G---GGTGTATTCAGGGCATG-CCTTGTAAATGAA-AT-CGATA--TGCATGACCCACCCATGGACT--CAACAT-ATC-CCCCC-TTATCAAATTAAAT-A-GGCAT-C-TTGCTTTCCCCTACGGG-ATAA-AATAGAT----ATTTTTAGTGGA--ATCATTATTATAGGTGGGCA--TGTGCTCTAATT-ATTGTC-TTTT-AAATATTTTCC-AATCATATT-TGCAT--T--TACA----TCTAA-ATT-AATTT-TTT-GTTG---ACAA--AAAAATTGATACGCCA-C-TCTAG-ATC-ACG-AATG-CG-TCACA--C-TAGATCGCTGAT-G-ACATCATG--ATAATAAGTGCATCGTGATCG-TG--TT-TTGTTTAT-TATCTGgtcgagg
gi|4 : taAAACCT--CTGTAG----TTT-ATG-GATT-GCA-TTG----CATT-CC-TTTACAGATTTTGA--CT----T-A--TAAT-----T-GTTAAAAATAA--T-ATA-TTG-T-GT-CGTATGTT--GAAT-TTC-TTA-CCAGT-CAT-CTGCAAC---CTC--G-ATTTC-AAA-T--AGACAATTTATTTCTAAGA-TTTCAT-TAGGA-G---TACAACGTTTT-TCAAA--TAG-CT-T--AATA-TTTAATTTGG-TTC-GTGTTTAAACAA-CAC-AGT-G-T-GGTGAATTTAGGGCATGCCCTTGT-AATG-A-AT-CGATA--TGCATGACCCACCCAT-GACT--CAACAT-ATC-CCCCCTTTATCAA--TAAATAA-GGCAT-CAATGCTTT--CCTACGGG----A-GATAGATAATAATTTTTAGTGAA--TTAA-TA----AGGTGGGCA-TTGTGCTCAAATTAATTGTC-TTTTAAAATA-TTTCC-AATCATATT-TGCA---T--TACA----TCTAA-ATT-AATTT-TTTCATTG--AACAA--AACATTTGAT-CGCCACC-TCTAT-ATC-ACGAAATG-CG-TCACA--C-TAG-TCGC-AAT-G-ACGTCATG--ATAATAAGTGCATCGCGATCGATG--TT-TTGTTTATATATCTGag
gi|5 : T--CTGTAC----TTT-ATG-AATT-ACG-TTG----CACT-CC-GTTGCTGATTTT----------------AAT-----T-GTTAAAA-TAA--T-ATA-TTT-T-AT-CATATGTT--AAAT-TTC-TTA-CCGGT-CAG-CTG-GAC---CTC--G-ATTTC-AAA-T--AGGCAAATTATTTCTAAGA-TTTCAT-CTGGG-G---TACAACGTTTT-TCAAA--TAG-CT-T--AATA-TTTA-TTTGG-TTC-GCGTTAAAACAA-CAC-ATT-G-T-GATGTTTTCAGGGCATGCCCTTGC-AATG-A-AT-TGATA--TGCATGACCCACCCAT-GACC--CAACAT-A---CCCCCCTTATCAA--TAAGTAG-GGCAT-CAATGCTTT--CCTACGGG-A--------------------TAGTGAA--TGCA-TA----AGGTGTGAA-TTGTGCTCAAATTGATAGTC-GTTT-AAATA-TTTCC-AATCATATT-TGCAT--T--TACATCATTCTAA-ATT-AATCT-TTTCGTTG--ACAAA--AACAATTCATCCGCCACC-TGTAG-ATC-ACGAAATG-CG-T-----------ATCAC-GAT-G-ACGTCACGTCATGATA----CCT-------AATG--TT-TTGCTTATA
gi|6 : aataAAACCT--CTGTA-----TTT-ATG-AATT-AT--TTG----CATC-AC-TTTACAGATTTTTA--CT----T-A--TAAT-----T--TTAAATAT----T-ATA-T-G-T-AT-CGTATGTT---AAT-TTC-TTA-CCG-T-CAG-CTGCA-C---CTC--G-ATTT--GAA-T--G--CAATT---------GA-TTTCAT-CAGGA-G---TACAACGTTTT-TCAA---TAG-CT-T--AATA-TTTAACTTGG-TTC-GCGTT-AAACAA-CACAATT-GTT-AATG-ATTTAGGGCATGCTCTTGT-AATG-C-AT-CGATA--TGCATGACCCATCCGT-GACC--CA--AT-ATC-TCCC--TTAACAA--TAAATAA-GATAT-CAA-GCTTT--CCTAC-GG-AG-A-GATGGATGAT-ATTTTTAGTGAA--TTCA-TA----AGATGTTAA-CTGTGTTCAGTTCGATAGTC-TTT--AAATA-TTT-C-AATCATATTGTGCAT--TACTATA----T---A-ATTAAATTT-TTTTGCTGACAATGA--AATA------TCGCCA-C-TCTAG-AT--ATG-AATG-GG-TCACT--C-TAGATCAC-TAT-G-A-GTCA-G--AAACGAAGTGC-TCGTGATT-ATG--TT-TTcagaggg
gi|7 : AAACCTTCCTGTAGAACTTTT-ATA-AATT-ACA-TTT----CATTTCC-TTTACAGATTTTAA--CT----T-A--TAAT-----T-GTTTAAAAAAA--A-ATA-TTG-T-TTACGTATGTT--GATT-TTC-TTA-CCGGT-CAC-CTGCAGC----TCAAG-ATTCC-AAA-T--AGGCAATTTATTTCTAATA-TTT--------------------------TCAAA--TAG-CT-T--AATC-TT--ATTTGGGTTC-GCGTTGAAACAA-CAC-AGT-G-T-GATGTATTTAGG-CATGCCCTTGC-ACTG-A-AT-CGATA--TGCATGACCCAC-------------ACAT-ATC-ACCCCTT-ATCAA----AATAA-G-CG--CAATGCTTT--CCTACGGG-GT-A-GATAGACAATA-TCTTTAGTGAA--TTCA-TA----AAGTGGGCA-TTGTGCTCAAATTGATGGTCTTTTTAAAATATTTTCC-AATTATTTTGTGCGC--T--TACG----TCCAATATC-CATTT-Ttgttgaat
gi|8 : tAAACCT--CTGTAG----TTTTATG-AATTTACG-TTG----CACA-CC-TTTACAGATTTTTAACCT----T-AGGTAATA----T-GTTAAAAACAA--TTATA-TTG-T-AT-CGTATGTCTCAAAT-TTC-TT--CCG-T-CAAGCTGCACC---CGG--GGATTTCTAAA-TTAAAACAATTTATTTTTAAGA-TT-CAT-CAAGTTG---TACAACGTTTT-TCAAAAATAGGCT-T--AAAT-TTTATTTTGG-TTC-GCGTTAAAACAA-CAC-ATTTG-T-GAAGT-TTTAGGGCATGTC--TGT-AATG----T-CGATAAATGC-TGACCCGCCCAT--ACC--CAACAT-ACC-CCCC--TTATCAA--TAAATAA-GGCAT-CAATGCTTT--C
gi|9 : T-CAA-TTGTAGCATTTTT--A-ATTTG-AAA-T--GAATAATTTATTTCTAAGA-TCTAAC-CAGGA-A---CGCAGCACTTT-TCAAA--TGT-CT-T--AACA-TTTC-TTTGG-TTC-ACGTTAAAATAT-CCC-AAT-G-T-GACGCATTGGGGGTATACCCTTGC-AATA-A-AG-TGATT--TGTATGGCCCACT-------------CAT-ATT-CCCCCTTC-TCAA--TAAACAA-AGAAT-TAATGC-AT--CCTACGGG-AC-A-AATAGATAACA--TTTCAGTGAA--TTCA-TA----AGGTAGGGT-TTATTCTTAAATTAATAGTT-CTTTAAA
Alignments
lowQualScore : 11111 111 111 1111111 222 1111 111 1111
lowQualScore : 77 9999 4 4 1 4 99 9999 2 8 4 5 66 9999 4 66 55555 4 7 66 4 4 4 4 4 66 4 4 4 1 4 99 7 777 9999 77 4 55 3 2 3 66666 3 55 4 4 55 4 999 66 4 5 4 4 1 4 4 4 1 1 4 000 4 55 8888888 3 3 88 1 88 3 3 55 7777 4 3 666 55 4 8888 4 2 3 8 0 8 4 3 8 99 55 7777 3 2 3 4 4 4 3333 66 5 0 111 4 4 7 4 4 66 4 1 4 4 4 4444 3 1 4 3 8 66 4 55
lowQualScore : .. .... . . . . .. .... . . . . .. .... . .. ..... . . .. . . . . . .. . . . . . .. . ... .... .. . .. . . . ..... . .. . . .. . ... .. . . . . . . . . . . . ... . .. ....... . . .. . .. . . .. .... . . ... .. . .... . . . . . . . . . .. .. .... . . . . . . .... .. . . ... . . . . . .. . . . . . .... . . . . . .. . ..
lowQualScore : 99 4444 4 4 9 4 11 4444 7 9 4 3 11 4444 4 11 66666 4 3 11 4 4 4 4 4 11 4 4 4 1 0 00 9 888 7777 99 0 55 6 8 6 66666 6 00 0 0 55 0 555 55 0 2 0 0 0 0 0 0 5 0 0 333 0 55 2222222 6 6 44 3 66 6 6 00 6666 0 9 555 55 0 5555 0 3 6 9 8 0 0 7 0 55 55 7777 6 0 6 0 0 7 1111 11 4 1 111 4 4 3 4 4 11 4 9 4 4 4 4444 4 1 4 7 2 11 4 22
consensus : AAACCT--CTGTAG----TTT-ATG-AATT-ACG-TTG----CACT-CC-TTTACAGATTTTNA--CT----T-A--TAAT-----T-GTTAAAAATAA--T-ATA-TTG-T-AT-CGTATGTT--GAAT-TTC-TTA-CCGGT-CAN-CTGCAAC---CTC--G-ATTTC-AAA-T--AGACAATTTATTTCTAAGA-TTTCAT-CAGGA-G---TGCAACGTTTT-TCAAA--TAG-CT-T--AATA-TTTAATTTGG-TTC-GCGTTAAAACAA-CAC-ANT-G-T-GATGTATTNAGGGCATGCCCTTGT-AATG-A-AT-CGATA--TGCATGACCCACCCAT-GACC--CAACAT-ATC-CCCCCTTTATCAA--TAAATAA-GGCAT-CAATGCTTT--CCTACGGG-AT-A-GATAGATAATAATTTTTAGTGAA--TTCA-TA----AGGTGGGCA-TTGTGCTCAAATTGATAGTC-TTTTAAAATA-TTTCC-AATCATATT-TGCAT--T--TACA----TCTAA-ATT-AATTT-TTTCGTTG--AACAA--AACAGTTGATCCGCCACC-TCTAG-ATC-ACGAAATG-CG-TCACA--C-TAGATCAC-GAT-G-ACGTCACG--ATAATAAGTGCATCGCGATCGATG--TT-TTGCTTATATATCTG
Reference ( family-1152 ) : AAACCT--CTGTAG----TTT-ATG-AATT-ACG-TTG----CACT-CC-TTTACAGATTTTNA--CT----T-A--TAAT-----T-GTTAAAAATAA--T-ATA-TTG-T-AT-CGTATGTT--GAAT-TTC-TTA-CCGGT-CAN-CTGCAAC---CTC--G-ATTTC-AAA-T--AGACAATTTATTTCTAAGA-TTTCAT-CAGGA-G---TGCAACGTTTT-TCAAA--TAG-CT-T--AATA-TTTAATTTGG-TTC-GCGTTAAAACAA-CAC-ANT-G-T-GATGTATTNAGGGCATGCCCTTGT-AATG-A-AT-CGATA--TGCATGACCCACCCAT-GACC--CAACAT-ATC-CCCCCTTTATCAA--TAAATAA-GGCAT-CAATGCTTT--CCTACGGG-AT-A-GATAGATAATAATTTTTAGTGAA--TTCA-TA----AGGTGGGCA-TTGTGCTCAAATTGATAGTC-TTTTAAAATA-TTTCC-AATCATATT-TGCAT--T--TACA----TCTAA-ATT-AATTT-TTTCGTTG--AACAA--AACAGTTGATCCGCCACC-TCTAG-ATC-ACGAAATG-CG-TCACA--C-TAGATCAC-GAT-G-ACGTCACG--ATAATAAGTGCATCGCGATCGATG--TT-TTGCTTATATATCTG
gi|1 : CTT--CTGTAG----TTT-ATG-GAT--ACGGTTG----CACT-C--TTTACAGATTTTGA--CT----TTA--TAAT-----TTGTTAAAAATGAATT-ATAATTG-T-AT-CGTATGTT--GAAT-TTCCTTA-CCAGTTCATTCTGCAAC---CTC--G-ATTTC-AA--T--AGACAATTTATTTCTATGAATTTCAT-TAGGA-G---TGCAACGTTTT-TCAAA--T-G-CTGT--AATA-TTTA-TTTG--TTC-GTGTTTCAACAAACAC--GT-G-T-GGTGTATTCAGGGC-CGCCCTTGT-A-TG-A-AT-CGATA--AGCATGACCCACCCAT-GATCAACAA-AT-ATC-CCCCCTT-ATCAAA-TAAATAA-GGCAT-CAATGGCTT--CCTACGGGGAT-A-AATAGATAATA---TTTAGTGAAATTTTA-TA----AGGTGGGCATTTGTGCTCAAA-TAATTGTC-TTTTAATA-A-TTTCC-AATCAATTT-TGC-TCAT--TACA----TCT-A-ATT-AATTT-TTT-GTTT--GACAA--AACAATTGATCCGCCACCTTCTAGTATC-ACG-AATG-CGTTCACA--C-TAGATCAC-GAT-G-ACGTCATG--ATAATAAGTGCCTCGTGATCGATGTTTT-TTGTTTA-ATATCTG
gi|10 : acCAT-ATG-GCCCCCTTATAAA--TAAATAA-GGCAT-CAATGCTTT--CCTATGGA-AT-A-GATAGAAACTA--TTTTAGTGAA--TTCA-TA----AGTTGGGCA-TTGTGCTAAAATTCATATTC-TTTTAAA-TA-TCTCC-AAACATATT-TCCAT--T--TACA----T---------------TTTCGTTT--A-CAA--AAGAGTTGATC--------------ATT----AAATG-CG-TCGCA--C-TAGATCAC-AAT-G-GCGTCA-------------------CGATCAATG--TT-TTACTTATAaggg
gi|11 : ccATAGTC-TTTTAAA-TA-GCTGC-AAATATATT-TTCAT--T--TATT----TGTAA-ATT-AATTT-T--CATTG--A-CAAGAAACAATTGATCCGACACA-TCCAG-ATC-ATTAAATG-TG-TCAGA--T-TAT-CCAC-GAT-G-ACGTCATG--AT-ATAAGTGCATCG-GATC-ATG---A-TTGCTTA---ATCT
gi|12 : CAT-ATC-CCCC--TTATCAA--TAAATAA-GTCAT-CACTGCTTT--CGTATGGG-AT-A-GATAGGCAAT-ATTTTT-GTGAA--TTCA-TA----AGGTAGGCA-TTGTGCTCCAATTGATAATC-TTTT-AGATA-TTTCA-AA-CATATT-TCCAT--T--TACA----TATAA-actcgggcgtc
gi|13 : -AAA-T--AAATAATTTACTTCCAAGA-TTTTAT-CTGGA-A---TGAAACACCTT-TCGCA--TAG-CT-A--AATAATTT--TTTGT-TTC-ATTTTAGAATAA-CTC-ATT-G-T-GATGCACTGAGAGCATGTCCTTGT--ATGAA-AT-CGATT--TGTATGAC
gi|14 : A----TCTCA-ATT-A-TTT-TTTCGTAG--ACAAA--AACAGTTGATCCGCAAAC-TCTAG-ATC-ATGA--------TCAAACTC-TAGATCAT-GAT-ATGCGTCAC------ACAAGTTCATCGCGATCAATG--TT-TTGGTTACATAT
gi|15 : ----TTT-ATA-A--T-ACG-TTGTAACCACT-ACAGCTGCAGATAT-AA--CTATTTT-A--TAAAAAAAAT-ATTGAAA-TAA--T-ATA-TTG-TTAT-CTTATGTT--GAAT-TTC-TTA-CCGGT-CAA-Caa
gi|16 : GA-TTTCAT-CAGGA-G---TACAACGTTTT-TCAAA--
gi|2 : TGTAG----TTT-AAGCAATT-TTC-TTG----TA-T-CC-TTTACAGATTTTTA--TC----T-A--TA-T-----T-GTTAAAAATAA--T-ATA-TTG-C-CT-TGT-TTTT--GAAT-TTC-TTAACTGGT-CAA-CTGCA-T---TTT--A-ATTT--AGA-T--GGACA-TTAATTTCTAA---TTCCATTCAGGA-AAGTTGCAACACTT---CAAA--TAG-GT-TTAAATA-TT--ATTTG--TCCAGTGTTAAAA-AA-CAC-ATT-G-TTGCTGTATCAAAGGAATGCCCT-GC-AATA-ACATTCGATA--TGCAATAGCCACCCAT---------ACATTATTGCCTCCTTTTCCAA--TAAATAAAGGCATTCAATGCTTT--CTAACGGG-AT-ACAATAGA-AATA--TTTTAGTGAA--TCCA-TA----ATGTGGGCA-TTGTGCTGAAGTTGATAGTG-TTTTTAAATA-TCTCCAAAACAATTT-TGCCCA-T--TACT----TCTAA-ATT-AATTTCTTTTGTTT--GACAA--AACAGTTGATCCGCCACCTTCCAG-ATCAATGAAATGACA--CACA--CTTAGATCAC-GATCG-ACGTCATG--ATAGCAAGTCCA-CGCAATGAATG--TTCTTGCTTATATA
gi|3 : taAAACCT--CTGTAG----TTT--TG-A-TT-AGT-TTG----CATTTCC-TTTACAGATTTTGA--CT----T-A--TAAT-----T-GTTAAAA-TAA--T--TA-TTGGT-AT-CGTATGGT--GAATCTTC-TTA-C-AGT-CAT-CTGCAAC---CTC----ATTTC-AAAAT--AGACAATTTTTTTCTATGA-TTT-AT-TAGGA-G---TGCAACTTTTTGTCAAA--TAG-CT-T--AATA-TTT-ATTTGG-TTC-GTGTTTAAACAA-CAC-AGT-G---GGTGTATTCAGGGCATG-CCTTGTAAATGAA-AT-CGATA--TGCATGACCCACCCATGGACT--CAACAT-ATC-CCCCC-TTATCAAATTAAAT-A-GGCAT-C-TTGCTTTCCCCTACGGG-ATAA-AATAGAT----ATTTTTAGTGGA--ATCATTATTATAGGTGGGCA--TGTGCTCTAATT-ATTGTC-TTTT-AAATATTTTCC-AATCATATT-TGCAT--T--TACA----TCTAA-ATT-AATTT-TTT-GTTG---ACAA--AAAAATTGATACGCCA-C-TCTAG-ATC-ACG-AATG-CG-TCACA--C-TAGATCGCTGAT-G-ACATCATG--ATAATAAGTGCATCGTGATCG-TG--TT-TTGTTTAT-TATCTGgtcgagg
gi|4 : taAAACCT--CTGTAG----TTT-ATG-GATT-GCA-TTG----CATT-CC-TTTACAGATTTTGA--CT----T-A--TAAT-----T-GTTAAAAATAA--T-ATA-TTG-T-GT-CGTATGTT--GAAT-TTC-TTA-CCAGT-CAT-CTGCAAC---CTC--G-ATTTC-AAA-T--AGACAATTTATTTCTAAGA-TTTCAT-TAGGA-G---TACAACGTTTT-TCAAA--TAG-CT-T--AATA-TTTAATTTGG-TTC-GTGTTTAAACAA-CAC-AGT-G-T-GGTGAATTTAGGGCATGCCCTTGT-AATG-A-AT-CGATA--TGCATGACCCACCCAT-GACT--CAACAT-ATC-CCCCCTTTATCAA--TAAATAA-GGCAT-CAATGCTTT--CCTACGGG----A-GATAGATAATAATTTTTAGTGAA--TTAA-TA----AGGTGGGCA-TTGTGCTCAAATTAATTGTC-TTTTAAAATA-TTTCC-AATCATATT-TGCA---T--TACA----TCTAA-ATT-AATTT-TTTCATTG--AACAA--AACATTTGAT-CGCCACC-TCTAT-ATC-ACGAAATG-CG-TCACA--C-TAG-TCGC-AAT-G-ACGTCATG--ATAATAAGTGCATCGCGATCGATG--TT-TTGTTTATATATCTGag
gi|5 : T--CTGTAC----TTT-ATG-AATT-ACG-TTG----CACT-CC-GTTGCTGATTTT----------------AAT-----T-GTTAAAA-TAA--T-ATA-TTT-T-AT-CATATGTT--AAAT-TTC-TTA-CCGGT-CAG-CTG-GAC---CTC--G-ATTTC-AAA-T--AGGCAAATTATTTCTAAGA-TTTCAT-CTGGG-G---TACAACGTTTT-TCAAA--TAG-CT-T--AATA-TTTA-TTTGG-TTC-GCGTTAAAACAA-CAC-ATT-G-T-GATGTTTTCAGGGCATGCCCTTGC-AATG-A-AT-TGATA--TGCATGACCCACCCAT-GACC--CAACAT-A---CCCCCCTTATCAA--TAAGTAG-GGCAT-CAATGCTTT--CCTACGGG-A--------------------TAGTGAA--TGCA-TA----AGGTGTGAA-TTGTGCTCAAATTGATAGTC-GTTT-AAATA-TTTCC-AATCATATT-TGCAT--T--TACATCATTCTAA-ATT-AATCT-TTTCGTTG--ACAAA--AACAATTCATCCGCCACC-TGTAG-ATC-ACGAAATG-CG-T-----------ATCAC-GAT-G-ACGTCACGTCATGATA----CCT-------AATG--TT-TTGCTTATA
gi|6 : aataAAACCT--CTGTA-----TTT-ATG-AATT-AT--TTG----CATC-AC-TTTACAGATTTTTA--CT----T-A--TAAT-----T--TTAAATAT----T-ATA-T-G-T-AT-CGTATGTT---AAT-TTC-TTA-CCG-T-CAG-CTGCA-C---CTC--G-ATTT--GAA-T--G--CAATT---------GA-TTTCAT-CAGGA-G---TACAACGTTTT-TCAA---TAG-CT-T--AATA-TTTAACTTGG-TTC-GCGTT-AAACAA-CACAATT-GTT-AATG-ATTTAGGGCATGCTCTTGT-AATG-C-AT-CGATA--TGCATGACCCATCCGT-GACC--CA--AT-ATC-TCCC--TTAACAA--TAAATAA-GATAT-CAA-GCTTT--CCTAC-GG-AG-A-GATGGATGAT-ATTTTTAGTGAA--TTCA-TA----AGATGTTAA-CTGTGTTCAGTTCGATAGTC-TTT--AAATA-TTT-C-AATCATATTGTGCAT--TACTATA----T---A-ATTAAATTT-TTTTGCTGACAATGA--AATA------TCGCCA-C-TCTAG-AT--ATG-AATG-GG-TCACT--C-TAGATCAC-TAT-G-A-GTCA-G--AAACGAAGTGC-TCGTGATT-ATG--TT-TTcagaggg
gi|7 : AAACCTTCCTGTAGAACTTTT-ATA-AATT-ACA-TTT----CATTTCC-TTTACAGATTTTAA--CT----T-A--TAAT-----T-GTTTAAAAAAA--A-ATA-TTG-T-TTACGTATGTT--GATT-TTC-TTA-CCGGT-CAC-CTGCAGC----TCAAG-ATTCC-AAA-T--AGGCAATTTATTTCTAATA-TTT--------------------------TCAAA--TAG-CT-T--AATC-TT--ATTTGGGTTC-GCGTTGAAACAA-CAC-AGT-G-T-GATGTATTTAGG-CATGCCCTTGC-ACTG-A-AT-CGATA--TGCATGACCCAC-------------ACAT-ATC-ACCCCTT-ATCAA----AATAA-G-CG--CAATGCTTT--CCTACGGG-GT-A-GATAGACAATA-TCTTTAGTGAA--TTCA-TA----AAGTGGGCA-TTGTGCTCAAATTGATGGTCTTTTTAAAATATTTTCC-AATTATTTTGTGCGC--T--TACG----TCCAATATC-CATTT-Ttgttgaat
gi|8 : tAAACCT--CTGTAG----TTTTATG-AATTTACG-TTG----CACA-CC-TTTACAGATTTTTAACCT----T-AGGTAATA----T-GTTAAAAACAA--TTATA-TTG-T-AT-CGTATGTCTCAAAT-TTC-TT--CCG-T-CAAGCTGCACC---CGG--GGATTTCTAAA-TTAAAACAATTTATTTTTAAGA-TT-CAT-CAAGTTG---TACAACGTTTT-TCAAAAATAGGCT-T--AAAT-TTTATTTTGG-TTC-GCGTTAAAACAA-CAC-ATTTG-T-GAAGT-TTTAGGGCATGTC--TGT-AATG----T-CGATAAATGC-TGACCCGCCCAT--ACC--CAACAT-ACC-CCCC--TTATCAA--TAAATAA-GGCAT-CAATGCTTT--C
gi|9 : T-CAA-TTGTAGCATTTTT--A-ATTTG-AAA-T--GAATAATTTATTTCTAAGA-TCTAAC-CAGGA-A---CGCAGCACTTT-TCAAA--TGT-CT-T--AACA-TTTC-TTTGG-TTC-ACGTTAAAATAT-CCC-AAT-G-T-GACGCATTGGGGGTATACCCTTGC-AATA-A-AG-TGATT--TGTATGGCCCACT-------------CAT-ATT-CCCCCTTC-TCAA--TAAACAA-AGAAT-TAATGC-AT--CCTACGGG-AC-A-AATAGATAACA--TTTCAGTGAA--TTCA-TA----AGGTAGGGT-TTATTCTTAAATTAATAGTT-CTTTAAA
blockSeqs : TC AACT T C A T G TAAC C T A A AC ATTT . GG AAAAA . A . T . G T A TC C . A G . AG A ATT AAG CT A TA . T T AAGT G AA G . TA A TAA GG A A . A T T T T C G A AA T AA GGACT T G CC T AT A T CC ATA C A AAT . T TTAT . C T A T A A G A AC TCAT G A T A C C ACAA GA G CCT . A A A . CT T A T C T CGTC A G A C A . C TA
blockSeqs : . . . . A . C . T T . T . . . . A . A . . . . . . . . . . G . A A . GG C . . . C . TG . . . . . . TAA T . A . . T . . . T A . AC . . GACT . . CT T . . . . AT . C AT . . . . G . A T . A G . . . A A . . . C AC . A CA . . A . . . . A . . . TG A T A C A . . CA
blockSeqs : . . . . A . T . T . . G . . . . . . A . . . . . . . . . . G . A A . A C . . . C . A . . . . . . TAT G . T . . G . . . T C . AA . . GACC . . CT T . . . . AT . T AT . . . . G . T . . A . . . . C C . . . C GA . G AC . . A . . . . A . . . TG A C A C A . . TA
blockSeqs : . . . . A . A . C . . G . . . . . . A . . . . . . . . . . G . T G . G C . . . C . G . . . . . . TA G . T . . G . . . A T . A . . GACC . . CC T . . . . AT . T AT . . . . A . A . . T . . . . C A . . . T AA . G CC . . A . . . . A . . . TG G G A T G . . TA
blockSeqs : . . . . A . G . T . . T . . . . . . A . . . . . . . . . . G . T C . G C . . . C . G . . . . . . TA G . A . . T . . . T C . A . . ACC . . CT T . . . . AG . T AT . . . . G . A . . T . . . . C A . . . C AC . A CC . . A . . . . A . . . TG A G A C G . . TA
blockSeqs : . . . . A . A . T . . A . . . . . . . . . . . . . . . . . G . G G . G G . . . C . G . . . . . . TC G . G . . T . . . T T . C . . . . . CT T . . . . GT . C A . . . . G . A . . T . . . . C A . . . C A . T C . . A . . . . A . . . C . G C T A . . T
blockSeqs : . . . . . G . C . . T . . . . . . . . . . . . . . . . . . . G . . A . . . . C . G . . . . . . T G . A . . G . . . T T . A . . . . . C T . . . . AC . T A . . . . G . . . . T . . . . C A . . . T A . A C . . . . . . . . . . . G . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . . A . G . . . . . . A G . A . . T . . . C T . A . . . . . . T . . . . A . . A . . . . A . . . . T . . . . C A . . . . A . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . A . . . . . A . . . . . . A . . . . . A . . . . G . . . . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . .
blockSeqCons : G* ** N* TA* G* GACC*** ** AT** AT* ** ** CC* ** TA
originalCons : AAACCT--CTGTAG----TTT-ATG-AATT-ACG-TTG----CACT-CC-TTTACAGATTTTNA--CT----T-A--TAAT-----T-GTTAAAAATAA--T-ATA-TTG-T-AT-CGTATGTT--GAAT-TTC-TTA-CCGGT-CAN-CTGCAAC---CTC--G-ATTTC-AAA-T--AGACAATTTATTTCTAAGA-TTTCAT-CAGGA-G---TGCAACGTTTT-TCAAA--TAG-CT-T--AATA-TTTAATTTGG-TTC-GCGTTAAAACAA-CAC-ANT-G-T-GATGTATTNAGGGCATGCCCTTGT-AATG-A-AT-CGATA--TGCATGACCCACCCAT-GACC--CAACAT-ATC-CCCCCTTTATCAA--TAAATAA-GGCAT-CAATGCTTT--CCTACGGG-AT-A-GATAGATAATAATTTTTAGTGAA--TTCA-TA----AGGTGGGCA-TTGTGCTCAAATTGATAGTC-TTTTAAAATA-TTTCC-AATCATATT-TGCAT--T--TACA----TCTAA-ATT-AATTT-TTTCGTTG--AACAA--AACAGTTGATCCGCCACC-TCTAG-ATC-ACGAAATG-CG-TCACA--C-TAGATCAC-GAT-G-ACGTCACG--ATAATAAGTGCATCGCGATCGATG--TT-TTGCTTATATATCTG
finalCons : AAACCT--CTGTAG----TTT-ATG-AATT-ACG-TTG----CACT-CC-TTTACAGATTTTNA--CT----T-A--TAAT-----T-GTTAAAAATAA--T-ATA-TTG-T-AT-CGTATGTT--GAAT-TTC-TTA-CCGGT-CAN-CTGCAAC---CTC--G-ATTTC-AAA-T--AGACAATTTATTTCTAAGA-TTTCAT-CAGGA-G---TGCAACGTTTT-TCAAA--TAG-CT-T--AATA-TTTA-TTTGG-TTC-GCGTTAAAACAA-CAC-ANT-G-T-GATGTATTNAGGGCATGCCCTTGT-AATG-A-AT-CGATA--TGCATGACCCACCCATGACC---CAACAT-ATC-CCCCCTTTATCAA--TAAATAA-GGCAT-CAATGCTTT--CCTACGGGAT--A-GATAGATAATAT-TTTTAGTGAA--TTCA-TA----AGGTGGGCA-TTGTGCTCAAATTGATAGTC-TTTTAAAATA-TTTCC-AATCATATT-TGCAT--T--TACA----TCTAA-ATT-AATTT-TTTCGTTG--AACAA--AACAGTTGATCCGCCACC-TCTAG-ATC-ACGAAATG-CG-TCACA--C-TAGATCAC-GAT-G-ACGTCACG--ATAATAAGTGCATCGCGATCGATG--TT-TTGCTTATATATCTG
Alignments
lowQualScore : 11111 111 1111111 1111 111 1111
lowQualScore : 77 9999 4 4 1 4 99 9999 2 8 4 5 66 9999 4 66 55555 4 7 66 4 4 4 4 4 66 4 4 4 1 4 99 7 777 9999 77 4 55 3 2 3 66666 3 55 4 4 55 8 4 66 4 5 4 4 1 4 4 4 1 1 4 000 4 55 8888888 3 3 88 1 88 3 3 55 7777 4 6 4 3 2 55 4 8888 4 2 3 8 0 8 4 3 8 99 55 7777 3 2 3 4 4 4 3333 66 5 0 111 4 4 7 4 4 66 4 1 4 4 4 4444 3 1 4 3 8 66 4 55
lowQualScore : .. .... . . . . .. .... . . . . .. .... . .. ..... . . .. . . . . . .. . . . . . .. . ... .... .. . .. . . . ..... . .. . . .. . . .. . . . . . . . . . . . ... . .. ....... . . .. . .. . . .. .... . . . . . .. . .... . . . . . . . . . .. .. .... . . . . . . .... .. . . ... . . . . . .. . . . . . .... . . . . . .. . ..
lowQualScore : 99 4444 4 4 9 4 11 4444 7 9 4 3 11 4444 4 11 66666 4 3 11 4 4 4 4 4 11 4 4 4 1 0 00 9 888 7777 99 0 55 6 8 6 66666 6 00 0 0 55 0 0 55 0 2 0 0 0 0 0 0 5 0 0 333 0 55 2222222 6 6 44 3 66 6 6 00 6666 0 3 0 2 3 55 0 5555 0 3 6 9 8 0 0 7 0 55 55 7777 6 0 6 0 0 7 1111 11 4 1 111 4 4 3 4 4 11 4 9 4 4 4 4444 4 1 4 7 2 11 4 22
consensus : AAACCT--CTGTAG----TTT-ATG-AATT-ACG-TTG----CACT-CC-TTTACAGATTTTNA--CT----T-A--TAAT-----T-GTTAAAAATAA--T-ATA-TTG-T-AT-CGTATGTT--GAAT-TTC-TTA-CCGGT-CAN-CTGCAAC---CTC--G-ATTTC-AAA-T--AGACAATTTATTTCTAAGA-TTTCAT-CAGGA-G---TGCAACGTTTT-TCAAA--TAG-CT-T--AATATTT-ATTT-GG-TTC-GCGTTAAAACAA-CAC-ANT-G-T-GATGTATTNAGGGCATGCCCTTGT-AATG-A-AT-CGATA--TGCATGACCCACCCAT-GACC--CAACAT-ATC-CCCCCTTTATCAA--TAAATAA-GGCAT-CAATGCTTT--CCTACGGG-AT-A-GATAGATAAT-ATTTTTAGTGAA--TTCA-TA----AGGTGGGCA-TTGTGCTCAAATTGATAGTC-TTTTAAAATA-TTTCC-AATCATATT-TGCAT--T--TACA----TCTAA-ATT-AATTT-TTTCGTTG--AACAA--AACAGTTGATCCGCCACC-TCTAG-ATC-ACGAAATG-CG-TCACA--C-TAGATCAC-GAT-G-ACGTCACG--ATAATAAGTGCATCGCGATCGATG--TT-TTGCTTATATATCTG
Reference ( family-1152 ) : AAACCT--CTGTAG----TTT-ATG-AATT-ACG-TTG----CACT-CC-TTTACAGATTTTNA--CT----T-A--TAAT-----T-GTTAAAAATAA--T-ATA-TTG-T-AT-CGTATGTT--GAAT-TTC-TTA-CCGGT-CAN-CTGCAAC---CTC--G-ATTTC-AAA-T--AGACAATTTATTTCTAAGA-TTTCAT-CAGGA-G---TGCAACGTTTT-TCAAA--TAG-CT-T--AATATTT-ATTT-GG-TTC-GCGTTAAAACAA-CAC-ANT-G-T-GATGTATTNAGGGCATGCCCTTGT-AATG-A-AT-CGATA--TGCATGACCCACCCAT-GACC--CAACAT-ATC-CCCCCTTTATCAA--TAAATAA-GGCAT-CAATGCTTT--CCTACGGG-AT-A-GATAGATAAT-ATTTTTAGTGAA--TTCA-TA----AGGTGGGCA-TTGTGCTCAAATTGATAGTC-TTTTAAAATA-TTTCC-AATCATATT-TGCAT--T--TACA----TCTAA-ATT-AATTT-TTTCGTTG--AACAA--AACAGTTGATCCGCCACC-TCTAG-ATC-ACGAAATG-CG-TCACA--C-TAGATCAC-GAT-G-ACGTCACG--ATAATAAGTGCATCGCGATCGATG--TT-TTGCTTATATATCTG
gi|1 : CTT--CTGTAG----TTT-ATG-GAT--ACGGTTG----CACT-C--TTTACAGATTTTGA--CT----TTA--TAAT-----TTGTTAAAAATGAATT-ATAATTG-T-AT-CGTATGTT--GAAT-TTCCTTA-CCAGTTCATTCTGCAAC---CTC--G-ATTTC-AA--T--AGACAATTTATTTCTATGAATTTCAT-TAGGA-G---TGCAACGTTTT-TCAAA--T-G-CTGT--AATATTT-ATTT-G--TTC-GTGTTTCAACAAACAC--GT-G-T-GGTGTATTCAGGGC-CGCCCTTGT-A-TG-A-AT-CGATA--AGCATGACCCACCCAT-GATCAACAA-AT-ATC-CCCCCTT-ATCAAA-TAAATAA-GGCAT-CAATGGCTT--CCTACGGGGAT-A-AATAGATAAT-A--TTTAGTGAAATTTTA-TA----AGGTGGGCATTTGTGCTCAAA-TAATTGTC-TTTTAATA-A-TTTCC-AATCAATTT-TGC-TCAT--TACA----TCT-A-ATT-AATTT-TTT-GTTT--GACAA--AACAATTGATCCGCCACCTTCTAGTATC-ACG-AATG-CGTTCACA--C-TAGATCAC-GAT-G-ACGTCATG--ATAATAAGTGCCTCGTGATCGATGTTTT-TTGTTTA-ATATCTG
gi|10 : acCAT-ATG-GCCCCCTTATAAA--TAAATAA-GGCAT-CAATGCTTT--CCTATGGA-AT-A-GATAGAAACT-ATTTT-AGTGAA--TTCA-TA----AGTTGGGCA-TTGTGCTAAAATTCATATTC-TTTTAAA-TA-TCTCC-AAACATATT-TCCAT--T--TACA----T---------------TTTCGTTT--A-CAA--AAGAGTTGATC--------------ATT----AAATG-CG-TCGCA--C-TAGATCAC-AAT-G-GCGTCA-------------------CGATCAATG--TT-TTACTTATAaggg
gi|11 : ccATAGTC-TTTTAAA-TA-GCTGC-AAATATATT-TTCAT--T--TATT----TGTAA-ATT-AATTT-T--CATTG--A-CAAGAAACAATTGATCCGACACA-TCCAG-ATC-ATTAAATG-TG-TCAGA--T-TAT-CCAC-GAT-G-ACGTCATG--AT-ATAAGTGCATCG-GATC-ATG---A-TTGCTTA---ATCT
gi|12 : CAT-ATC-CCCC--TTATCAA--TAAATAA-GTCAT-CACTGCTTT--CGTATGGG-AT-A-GATAGGCAAT-ATTTTT-GTGAA--TTCA-TA----AGGTAGGCA-TTGTGCTCCAATTGATAATC-TTTT-AGATA-TTTCA-AA-CATATT-TCCAT--T--TACA----TATAA-actcgggcgtc
gi|13 : -AAA-T--AAATAATTTACTTCCAAGA-TTTTAT-CTGGA-A---TGAAACACCTT-TCGCA--TAG-CT-A--AATAATT-TTTT-GT-TTC-ATTTTAGAATAA-CTC-ATT-G-T-GATGCACTGAGAGCATGTCCTTGT--ATGAA-AT-CGATT--TGTATGAC
gi|14 : A----TCTCA-ATT-A-TTT-TTTCGTAG--ACAAA--AACAGTTGATCCGCAAAC-TCTAG-ATC-ATGA--------TCAAACTC-TAGATCAT-GAT-ATGCGTCAC------ACAAGTTCATCGCGATCAATG--TT-TTGGTTACATAT
gi|15 : ----TTT-ATA-A--T-ACG-TTGTAACCACT-ACAGCTGCAGATAT-AA--CTATTTT-A--TAAAAAAAAT-ATTGAAA-TAA--T-ATA-TTG-TTAT-CTTATGTT--GAAT-TTC-TTA-CCGGT-CAA-Caa
gi|16 : GA-TTTCAT-CAGGA-G---TACAACGTTTT-TCAAA--
gi|2 : TGTAG----TTT-AAGCAATT-TTC-TTG----TA-T-CC-TTTACAGATTTTTA--TC----T-A--TA-T-----T-GTTAAAAATAA--T-ATA-TTG-C-CT-TGT-TTTT--GAAT-TTC-TTAACTGGT-CAA-CTGCA-T---TTT--A-ATTT--AGA-T--GGACA-TTAATTTCTAA---TTCCATTCAGGA-AAGTTGCAACACTT---CAAA--TAG-GT-TTAAATATT--ATTT-G--TCCAGTGTTAAAA-AA-CAC-ATT-G-TTGCTGTATCAAAGGAATGCCCT-GC-AATA-ACATTCGATA--TGCAATAGCCACCCAT---------ACATTATTGCCTCCTTTTCCAA--TAAATAAAGGCATTCAATGCTTT--CTAACGGG-AT-ACAATAGA-AAT-ATTTT-AGTGAA--TCCA-TA----ATGTGGGCA-TTGTGCTGAAGTTGATAGTG-TTTTTAAATA-TCTCCAAAACAATTT-TGCCCA-T--TACT----TCTAA-ATT-AATTTCTTTTGTTT--GACAA--AACAGTTGATCCGCCACCTTCCAG-ATCAATGAAATGACA--CACA--CTTAGATCAC-GATCG-ACGTCATG--ATAGCAAGTCCA-CGCAATGAATG--TTCTTGCTTATATA
gi|3 : taAAACCT--CTGTAG----TTT--TG-A-TT-AGT-TTG----CATTTCC-TTTACAGATTTTGA--CT----T-A--TAAT-----T-GTTAAAA-TAA--T--TA-TTGGT-AT-CGTATGGT--GAATCTTC-TTA-C-AGT-CAT-CTGCAAC---CTC----ATTTC-AAAAT--AGACAATTTTTTTCTATGA-TTT-AT-TAGGA-G---TGCAACTTTTTGTCAAA--TAG-CT-T--AATATTT-ATTT-GG-TTC-GTGTTTAAACAA-CAC-AGT-G---GGTGTATTCAGGGCATG-CCTTGTAAATGAA-AT-CGATA--TGCATGACCCACCCATGGACT--CAACAT-ATC-CCCCC-TTATCAAATTAAAT-A-GGCAT-C-TTGCTTTCCCCTACGGG-ATAA-AATAG---AT-ATTTTTAGTGGA--ATCATTATTATAGGTGGGCA--TGTGCTCTAATT-ATTGTC-TTTT-AAATATTTTCC-AATCATATT-TGCAT--T--TACA----TCTAA-ATT-AATTT-TTT-GTTG---ACAA--AAAAATTGATACGCCA-C-TCTAG-ATC-ACG-AATG-CG-TCACA--C-TAGATCGCTGAT-G-ACATCATG--ATAATAAGTGCATCGTGATCG-TG--TT-TTGTTTAT-TATCTGgtcgagg
gi|4 : taAAACCT--CTGTAG----TTT-ATG-GATT-GCA-TTG----CATT-CC-TTTACAGATTTTGA--CT----T-A--TAAT-----T-GTTAAAAATAA--T-ATA-TTG-T-GT-CGTATGTT--GAAT-TTC-TTA-CCAGT-CAT-CTGCAAC---CTC--G-ATTTC-AAA-T--AGACAATTTATTTCTAAGA-TTTCAT-TAGGA-G---TACAACGTTTT-TCAAA--TAG-CT-T--AATATTTAATTT-GG-TTC-GTGTTTAAACAA-CAC-AGT-G-T-GGTGAATTTAGGGCATGCCCTTGT-AATG-A-AT-CGATA--TGCATGACCCACCCAT-GACT--CAACAT-ATC-CCCCCTTTATCAA--TAAATAA-GGCAT-CAATGCTTT--CCTACGGG----A-GATAGATAATAATTTTTAGTGAA--TTAA-TA----AGGTGGGCA-TTGTGCTCAAATTAATTGTC-TTTTAAAATA-TTTCC-AATCATATT-TGCA---T--TACA----TCTAA-ATT-AATTT-TTTCATTG--AACAA--AACATTTGAT-CGCCACC-TCTAT-ATC-ACGAAATG-CG-TCACA--C-TAG-TCGC-AAT-G-ACGTCATG--ATAATAAGTGCATCGCGATCGATG--TT-TTGTTTATATATCTGag
gi|5 : T--CTGTAC----TTT-ATG-AATT-ACG-TTG----CACT-CC-GTTGCTGATTTT----------------AAT-----T-GTTAAAA-TAA--T-ATA-TTT-T-AT-CATATGTT--AAAT-TTC-TTA-CCGGT-CAG-CTG-GAC---CTC--G-ATTTC-AAA-T--AGGCAAATTATTTCTAAGA-TTTCAT-CTGGG-G---TACAACGTTTT-TCAAA--TAG-CT-T--AATATTT-ATTT-GG-TTC-GCGTTAAAACAA-CAC-ATT-G-T-GATGTTTTCAGGGCATGCCCTTGC-AATG-A-AT-TGATA--TGCATGACCCACCCAT-GACC--CAACAT-A---CCCCCCTTATCAA--TAAGTAG-GGCAT-CAATGCTTT--CCTACGGG-A--------------------TAGTGAA--TGCA-TA----AGGTGTGAA-TTGTGCTCAAATTGATAGTC-GTTT-AAATA-TTTCC-AATCATATT-TGCAT--T--TACATCATTCTAA-ATT-AATCT-TTTCGTTG--ACAAA--AACAATTCATCCGCCACC-TGTAG-ATC-ACGAAATG-CG-T-----------ATCAC-GAT-G-ACGTCACGTCATGATA----CCT-------AATG--TT-TTGCTTATA
gi|6 : aataAAACCT--CTGTA-----TTT-ATG-AATT-AT--TTG----CATC-AC-TTTACAGATTTTTA--CT----T-A--TAAT-----T--TTAAATAT----T-ATA-T-G-T-AT-CGTATGTT---AAT-TTC-TTA-CCG-T-CAG-CTGCA-C---CTC--G-ATTT--GAA-T--G--CAATT---------GA-TTTCAT-CAGGA-G---TACAACGTTTT-TC-AA--TAG-CT-T--AATATTTAACTT-GG-TTC-GCGTT-AAACAA-CACAATT-GTT-AATG-ATTTAGGGCATGCTCTTGT-AATG-C-AT-CGATA--TGCATGACCCATCCGT-GACC--CA--AT-ATC-TCCC--TTAACAA--TAAATAA-GATAT-CAA-GCTTT--CCTAC-GG-AG-A-GATGGATGAT-ATTTTTAGTGAA--TTCA-TA----AGATGTTAA-CTGTGTTCAGTTCGATAGTC-TTT--AAATA-TTT-C-AATCATATTGTGCAT--TACTATA----T---A-ATTAAATTT-TTTTGCTGACAATGA--AATA------TCGCCA-C-TCTAG-AT--ATG-AATG-GG-TCACT--C-TAGATCAC-TAT-G-A-GTCA-G--AAACGAAGTGC-TCGTGATT-ATG--TT-TTcagaggg
gi|7 : AAACCTTCCTGTAGAACTTTT-ATA-AATT-ACA-TTT----CATTTCC-TTTACAGATTTTAA--CT----T-A--TAAT-----T-GTTTAAAAAAA--A-ATA-TTG-T-TTACGTATGTT--GATT-TTC-TTA-CCGGT-CAC-CTGCAGC----TCAAG-ATTCC-AAA-T--AGGCAATTTATTTCTAATA-TTT--------------------------TCAAA--TAG-CT-T--AAT-CTT-ATTT-GGGTTC-GCGTTGAAACAA-CAC-AGT-G-T-GATGTATTTAGG-CATGCCCTTGC-ACTG-A-AT-CGATA--TGCATGACCCAC-------------ACAT-ATC-ACCCCTT-ATCAA----AATAA-G-CG--CAATGCTTT--CCTACGGG-GT-A-GATAGACAAT-ATCTTTAGTGAA--TTCA-TA----AAGTGGGCA-TTGTGCTCAAATTGATGGTCTTTTTAAAATATTTTCC-AATTATTTTGTGCGC--T--TACG----TCCAATATC-CATTT-Ttgttgaat
gi|8 : tAAACCT--CTGTAG----TTTTATG-AATTTACG-TTG----CACA-CC-TTTACAGATTTTTAACCT----T-AGGTAATA----T-GTTAAAAACAA--TTATA-TTG-T-AT-CGTATGTCTCAAAT-TTC-TT--CCG-T-CAAGCTGCACC---CGG--GGATTTCTAAA-TTAAAACAATTTATTTTTAAGA-TT-CAT-CAAGTTG---TACAACGTTTT-TCAAAAATAGGCT-T--AAATTTT-ATTTTGG-TTC-GCGTTAAAACAA-CAC-ATTTG-T-GAAGT-TTTAGGGCATGTC--TGT-AATG----T-CGATAAATGC-TGACCCGCCCAT--ACC--CAACAT-ACC-CCCC--TTATCAA--TAAATAA-GGCAT-CAATGCTTT--C
gi|9 : T-CAA-TTGTAGCATTTTT--A-ATTTG-AAA-T--GAATAATTTATTTCTAAGA-TCTAAC-CAGGA-A---CGCAGCACTTT-TCAAA--TGT-CT-T--AACATTT-CTTT-GG-TTC-ACGTTAAAATAT-CCC-AAT-G-T-GACGCATTGGGGGTATACCCTTGC-AATA-A-AG-TGATT--TGTATGGCCCACT-------------CAT-ATT-CCCCCTTC-TCAA--TAAACAA-AGAAT-TAATGC-AT--CCTACGGG-AC-A-AATAGATAAC-A-TTTCAGTGAA--TTCA-TA----AGGTAGGGT-TTATTCTTAAATTAATAGTT-CTTTAAA