lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 22222222222222222 2222222222 777777777777777777 1 1 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111 6666666666666666666666666666666666 1 11
lowQualScore : 0 0 5 0 4 4 4 4 55555555555555555 3 3 3 9999 0 7777777777 3 7 4 222222222222222222 8 8 4 9 4 0 4 5 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3 0 3 222 3 6666 7 3 1 8888888888888888888888888888888888 55 4 2 00 6
lowQualScore : . . . . . . . . ................. . . . .... . .......... . . . .................. . . . . . . . . ........................................................................................ . . . ... . .... . . . .................................. .. . . .. .
lowQualScore : 0 8 7 5 0 0 0 0 22222222222222222 6 6 6 6666 5 0000000000 6 3 9 888888888888888888 0 0 0 6 4 9 0 1 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 6 6 3 333 3 2222 3 6 6 6666666666666666666666666666666666 55 0 0 00 0
consensus : ACAC-AATGC-TTTGTAA-A-C-GTT-G------TT--A------GTAAACACG-GCGA-CAA-CTTCAACGGCAAT-TT------AGGTT-TGAT-GATTTTT---AATACGA-TTTT-AAGTGAA-TTGG-AAAATCTAT-AAACTTAAGT-CTCGTGA-TAGTGTAAACGC-------------A------------TAGAAACCCGTCAAGTCATCGTTGTCTGTGTATGCACCCGAAAAANANNNGNNNTGGATTTATCGA-GTATTGAGCGACAGCT-AAC-G-AT-TAAAT---GAACTG-TTTTCGTT---GAAAT-------TT---TTG----------TTT--AT-C-ATA-TTTTCAATTTGTATC
Reference ( gi|3 ) : ACAC-AATGC-TTTGTAA-A-C-GTT-G------TT--A------GTAAACACG-GCGA-CAA-CTTCAACGGCAAT-TT------AGGTT-TGAT-GATTTTTTTTAATACGA-TTTTTGAGTGAA-TTGG-AAAATCTAT-AAACATAAGT-CTCGTGA-TATTGTAAACGC-------------A------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGA-GTATTGAGCGATAGCT-AAC-G-AT-TAAAT---GAATTG-TTTTCGTT---GA----------TT---TTG----------TTT--AT-C-ATG-TTTCCAATTTGTATC
gi|2 : ACAC-A-TGC-TTTGGTA-A-C-GCT-G------T---A------GTAAACACG-GCG--CAA-CTTCA-CGACAAT-TT------AGGTT-TGAT-GATTTT----AATACAT-TTTTTGAGTGAA-TTGG-AAAATTTAT-AAACTTAAGT-CTCGTGA-TAGTGTAAACGC-------------AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGATTTATCGA-GTA-TGA-CGATAGCT-AAC-G-AT-TAAAT---GAACTGCTTTTCGTT---GAAATG------TT---TTA----------TTT--AT-C-ATA-TTTTCAATTTGTA
gi|6 : CAC-AATGC-TTTGTTA-A-T-GTT-G------TA--A------GTAAACACA-GCGA-AAA-CTTCAACGGCAAT-TT------AGGTT-TGAT-GACTTCTATTA--GCGA------AAGTGAA-TTGG-AAAATCTGT-ATACTTGAGT-GTACTG---ATNNNNNNNNN-------------N------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGATTTATCAA-ATATTGAGCGACAACC-AAC-G-AT-TATACTGAGAACCG-TTTTCTTT---AAAAC-------TTCAGTTG-----------TT--ATCC-ATATTTTTCAAT
gi|1 : CACGAATTG-TTTGTAA-AAC-GTT-G------TT--A------GTTA---------------CTTCAACGCCAAT-TT------A---T-TGATCGATTTT----AATACGA-TTTTTGAATGAA-TTGGAAAAATCTAT-AAAGTTAAGG-TGTGTGAGTAGTGTAAACGC-------------
gi|4 : cgagC-GATGCCTTTGTAA---C-GTTTG------TTTTG------GTAA-CACG-GGGA-CAA-AT-CAACGGCAAT-TTTT----AGTCT-TGATTGATTTTT---AACA-GA-TTTTAAAGTGAA-TTGG-AAAATCTAT-AAACTTTAGT-CTTGTGA-TAGTGTAAACGC-------------A------------cannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaatgggatttatcgaagtattagcgatagctaacatttaatgatttgttttcattgatttttttaaatcatattttcaattgtatcggct
gi|5 : ATGC-TTTGTAAGA-C-GTT-G------TT--AACATTAGTAAACACGTGCGA-CTA-CT---------A----------AGGTCCTGAT-GAATTTTT--AAT-CGA------AAGCGAAATTGG-AAAATCGATCAAACTTAAGT-TTCGTAA-TAGTGTAAGCGC-------------aannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatggattgattaagtattgagcgaccagtgtatacgttaaactgtatatcttatcgaatgttttttattgt
gi|9 : agcGC-TTTGCAA-A-C-GTT-GACGTTATT--A------GTAAACATG-ACGA-CAA-CTTCAACGGCAAA-TT------AGGTT-TTAT-GA----TTTTA--ACGA------AAGTGCA-TAGG-AAAATTTGT-AACCTTGATT-CTAGTGA-TAGTGTAAACGC----------------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCATGGATTTATCGA-ATATTGAGGGACAGCT-AACGG-AT-TAAAA---GAAATG-TTTTC-TTCCAAA----------CT---TTG-----------TT--GT-CTATA-TTTTCAATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatatggattggatttatccgagtaatttacgaacagctaacgttttccgttgaaattttttttatcatatttcaatttttgt
gi|7 : C-TTTGTAA-A-CCGCT-G------TT--A------GTAAACACG-GTGA-CAAACTTCAACGGCAAA-TT------AGGTT-TGAT-GATTTT-----ACACGATTTTTTGAGTGAATTTGG-AAAATCTAT-AAACTTAAGTCCTCGTGA-TA-TGT-AACGC-------------
gi|8 : gcTGTCA-A-C-GTT-G------TT--ACATGTAGTAAACACG-GCGA-CAA-CT--------------------AAGGT-TGAT-GATTTTT---AATACGA-------AGTGAA-TTGG-AAAATCTAT-AAAC-TAAGT-CTTGTAA-TAGTGTAAACGCNNNNNNNNNNNNNN------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATGGATCTGGATTTATCGA-GTATTGAGCGATAGCTCAAC-G-ATATGA-----GAACTG-ATTTCGTT---GAATT-------TT---TTT----------TTT--AT-C-ATA-TTTTCAATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggatttattgacgtattgaacatgcgtaacgaattaatatgaaatccaagttgtcaacattttctcaatactttat
gi|11 : ta-A-C-GTT-G------TT--A------GTAAACAT--GCGA-CAA-CTTC-ACGGCAAT-ATGCATGGAGGTC-TGAT-
gi|10 : aacgttg-A-C-GTT-G------T----------GTAAAC-TG-GCGAACAA--TTCAACGGCAATATTG-----AGGTT-TGAT-GA-----TTTA--AGGA------AAAGGAA-TTGGAAAAATCTGT-AGAttaaaaatctgtagatgtgttacaaaggcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggattttatcaaatatcgagcgacagctggctccaacggatttaatgaaatattatctattatgttcaatttg
gi|14 : aaacgttgT--A------GTAAACACG-GCGA-CTA-CT---------A----------AGGTC-TGAT-GATTTTT---AATACGA------AAGCGAA-TTGG-AAAATCGAT-CAACTTAAGT-TTCGTAA-TAGTGTAAtgtgttacaaatgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaacatgtgtatacaaaatatcgagcgcagctggctctccacggatttaatggactggatcgacgaaaatttatcatctataagttcaattt
gi|12 : gGTGA-TGGTGTAAACGC-------------A------------TAGAAACCCGTCAAGTCATCGTTGTCTGTGTATGCACCCGAAAAAAACATGGATTTA-----TCGA-ATATCGAGCGACAGCT-AAC-ATAT-TAAAT---GAACTG-TTTT-GTTCAAAA----------TT---TTG-----------TT--AC-CTATA-TTTTTAATTTGTAT
gi|1 : TCGAAGTATT-AGCGATAGCT-AAC---AT-TTAAT---GATTTG-TTTTCATT---GA----------TT---TT-----------TTTAAAT-C-ATA-TTTTCAA-TTGTATC
gi|13 : cgagcacgaattgtttgtaaaacgttgttagttacttcaacgccaatttattgatcgattttaatacgatttttgaatgaattggaaaaatctataaagttaaggtgtgtgagtagtgtaaacgccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaatgggatttaTCGA-GTGCTGAGCGATAGCT-AAC-G-AT-TAAAT---GAACTG-TTTTCGTT---GAAATGTTTTTTTT---TTGTTTTTTTTTTTTT--AT-C-ATA-TTTTCAATTTGTATCggct
gi|19 : attaaTTGA-GTTTTGAACGATAGCT-AAC-A-AT-TAAAT---GAAg
gi|15 : gatttaTCGA-GTATTTATCGACAGCT-A--------------------TG-TTTTTGTT---GAAATT------TT---TTT----------TTT--AT-C-ATA-TTTTCAATTTGT
gi|17 : caatggatctggatttTCGA-GTATTTATCGACAGCT-AA-------------------TG-TTTTCGTT---GAAAT-------TT---TTT----------TTT--AT-C-ATA-TT
gi|18 : aatggatctggatttaA-ATATCGAGCGACAGCC-AAT-G-AT-TAAAT---GAACCG-TTT
gi|16 : atgcacccgagaaaaacatggatttatgaANTGACAGCC-AAC-ATAT-TAAAT---GAACTG-TTTT-GTTCGAAA----------TT---TTG-----------TT--AT-CTATA-TTTTCAATTT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222222222222 2222222222 4444444 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111 111111111 222222222222
lowQualScore : 8 5 3 3 3 3 00000000000000000 3 3 3 7 22 2222222222 3 6 44 8888 0 3 7777777 3 7 7 3 4 3 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2 2 2 2 2 3 2 2 2 4 2 2 2222 2 777777 2 2 444 0 2 444444444 555 444444444444 2 2 9 3
lowQualScore : . . . . . . ................. . . . . .. .......... . . .. .... . . ....... . . . . . . ..................................................................................... . . . . . . . . . . . . .... . ...... . . ... . . ......... ... ............ . . . .
lowQualScore : 0 0 6 6 6 6 88888888888888888 3 3 3 3 22 5555555555 3 7 99 5555 4 6 3333333 6 3 3 6 0 6 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777 5 5 5 5 5 4 4 4 4 7 4 4 1111 4 444444 1 7 777 6 9 888888888 000 111111111111 9 9 2 1
consensus : ACAC-AATGC-TTTGTAA-A-C-GTT-G------TT--A------GTAAACACG-GCGA-CAA-CTTCAACGGCAAT-TT------AGGTT-TGAT-GA-TTTTT---AATA-CGA--TTTT-AA-GTGAA-TTGG-AAAATCTAT-AAACTTAAGT-CTCGTGA-TAGTGTAAACGC----------------A--------------TAGAAACCCGTCAAGTCATCGTTGTCTGTGTATGCACCCGAGAAANANNGGNTNTGGATTT-AT-CG-A-GT-ATTGAGCG-A-CA-GC-T-A-AC-G-AT-TAA-AT---GAACTG-T---TTTCGTT-GAAA-------T-TT---TTG----------TTT-AT-C-ATA-TTTTCAATTTGTATC
Reference ( family-110 ) : ACAC-AATGC-TTTGTAA-A-C-GTT-G------TT--A------GTAAACACG-GCGA-CAA-CTTCAACGGCAAT-TT------AGGTT-TGAT-GA-TTTTT---AATA-CGA--TTTT-AA-GTGAA-TTGG-AAAATCTAT-AAACTTAAGT-CTCGTGA-TAGTGTAAACGC----------------A--------------TAGAAACCCGTCAAGTCATCGTTGTCTGTGTATGCACCCGAAAAANANNNGNNNTGGATTT-AT-CG-A-GT-ATTGAGCG-A-CA-GC-T-A-AC-G-AT-TAA-AT---GAACTG-T---TTTCGTT-GAAA-------T-TT---TTG----------TTT-AT-C-ATA-TTTTCAATTTGTATC
gi|1 : CACGAATTG-TTTGTAA-AAC-GTT-G------TT--A------GTTA---------------CTTCAACGCCAAT-TT------A---T-TGATCGA-TTTT----AATA-CGAT-TTTT-GA-ATGAA-TTGGAAAAATCTAT-AAAGTTAAGG-TGTGTGAGTAGTGTAAACGC----------------
gi|1 : cgagGGATTT-AT-CGAA-GT-ATT-AGCG-A-TA-GC-T-A-AC---AT-TTA-AT---GATTTG-T---TTTCATT-G--A-------T-TT---TTT----------TAA-AT-C-ATA-TTTTCAA-TTGTATCcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaatgggatttatcgaagtattagcgatagctaacatttaatgatttgttttcattgatttttttaaatcatattttcaattgtatcggct
gi|10 : cgagcacgaattgtttgtaaaacgttgttagttacttcaacgccaatttattgatcgattttaatacgatttttgaatgaattggaaaaatctataaagttaaggtgtgtgagtagtgtaaacgccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaatg-A-C-GTT-G------T----------GTAAAC-TG-GCGAACAA--TTCAACGGCAATATTG-----AGGTT-TGAT-GA-TTT------A-A-GGA-------AA-AGGAA-TTGGAAAAATCTGT-AGAggct
gi|11 : aaacgttg-A-C-GTT-G------TT--A------GTAAACAT--GCGA-CAA-CTTC-ACGGCAAT-ATGCATGGAGGTC-TGAT-tgtgttacaaatgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaacatgtgtatacaaaatatcgagcgcagctggctctccacggatttaatggactggatcgacgaaaatttatcatctataagttcaattt
gi|11 : aacgttgGGATTTTAT-CA-A-AT-ATCGAGCG-A-CA-GC-T-G-GC----T-CCA-AC---GGA---------TTTAAT-GAAA-------T-AT---T-A----------TCT-AT----TA-TGTTCAATTTGttaaaaatctgtagatgtgttacaaaggcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggattttatcaaatatcgagcgacagctggctccaacggatttaatgaaatattatctattatgttcaatttg
gi|12 : aacgttgacgttgttagtaaacatgcgacaacttcacggcaatatgcatggaggtctgatttaaaaatctgtagatgtgttacaaaggcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTGA-TGGTGTAAACGC----------------A--------------TAGAAACCCGTCAAGTCATCGTTGTCTGTGTATGCACCCGAAAAAAA-----CATGGATTT-AT-CG-A-AT-ATCGAGCG-A-CA-GC-T-A-AC-ATAT-TAA-AT---GAACTG-T---TTT-GTT-CAAA-------A-TT---TTG-----------TT-AC-CTATA-TTTTTAATTTGTAT
gi|13 : ATTA-AT-CG-A-GT-GCTGAGCG-A-TA-GC-T-A-AC-G-AT-TAA-AT---GAACTG-T---TTTCGTT-GAAATGTTTTTT-TT---TTGTTTTTTTTTTTTT-AT-C-ATA-TTTTCAATTTGTATC
gi|14 : T--A------GTAAACACG-GCGA-CTA-CT---------A----------AGGTC-TGAT-GA-TTTTT---AATA-CGA-------AA-GCGAA-TTGG-AAAATCGAT-CAACTTAAGT-TTCGTAA-TAGTGTAAg
gi|15 : gAATGGATCTGGATTT--T-CG-A-GT-ATTTATCG-A-CA-GC-T-A----------------------TG-T---TTTTGTT-GAAA-------T-TT---TTT----------TTTTAT-C-ATA-TTTTCAATTTGT
gi|16 : cANTG-A-CA-GC-C-A-AC-ATAT-TAA-AT---GAACTG-T---TTT-GTTCGAAA---------TT---TTG-----------TT-AT-CTATA-TTTTCAATTT
gi|17 : ggtatgataaaAATGGATCTGGATTT-AT-CG-A-GT-ATTTATCG-A-CA-GC-T-A-A--------------------TG-T---TTTCGTT-GAAA-------T-TT---TTT----------TTT-AT-C-ATA-TT
gi|18 : ATGCACCCGAGAAAAACA-----TGGATTT-AT-GA-A-AT-ATCGAGCG-A-CA-GC-C-A-AT-G-AT-TAA-AT---GAACCG-T---TT
gi|19 : GATTT-AT-TG-A-GT-TTTGAACG-A-TA-GC-T-A-AC-A-AT-TAA-AT---GAA
gi|2 : ACAC-A-TGC-TTTGGTA-A-C-GCT-G------T---A------GTAAACACG-GCG--CAA-CTTCA-CGACAAT-TT------AGGTT-TGAT-GA--TTTT---AATA-C-ATTTTTT-GA-GTGAA-TTGG-AAAATTTAT-AAACTTAAGT-CTCGTGA-TAGTGTAAACGC----------------AANNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATG-ATTT-AT-CG-A-GT-A-TGA-CG-A-TA-GC-T-A-AC-G-AT-TAA-AT---GAACTGCT---TTTCGTT-GAAA-------TGTT---TTA----------TTT-AT-C-ATA-TTTTCAATTTGTA
gi|3 : ACAC-AATGC-TTTGTAA-A-C-GTT-G------TT--A------GTAAACACG-GCGA-CAA-CTTCAACGGCAAT-TT------AGGTT-TGAT-GA-TTTTTTTTAATA-CGA--TTTTTGA-GTGAA-TTGG-AAAATCTAT-AAACATAAGT-CTCGTGA-TATTGTAAACGC----------------A--------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NT-CG-A-GT-ATTGAGCG-A-TA-GC-T-A-AC-G-AT-TAA-AT---GAATTG-T---TTTCGTT-GA-----------TT---TTG----------TTT-AT-C-ATG-TTTCCAATTTGTATC
gi|4 : C-GATGCCTTTGTAA---C-GTTTG------TTTTG------GTAA-CACG-GGGA-CAA-AT-CAACGGCAAT-TTTT----AGTCT-TGATTGA-TTTTT---AACA--GA--TTTT-AAAGTGAA-TTGG-AAAATCTAT-AAACTTTAGT-CTTGTGA-TAGTGTAAACGC----------------AAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATGGATTG-AT-TA-A-GT-ATTGAGCG-ACCA-GTGT-ATAC-G--T-TA--------AACTG-TATATCTTATC-G-AA-------T-GT---TT-----------TTT-AT-
gi|5 : ATGC-TTTGTAAGA-C-GTT-G------TT--AACATTAGTAAACACGTGCGA-CTA-CT---------A----------AGGTCCTGAT-GAATTTTT---AAT--CGA-------AA-GCGAAATTGG-AAAATCGATCAAACTTAAGT-TTCGTAA-TAGTGTAAGCGCNNNNNNNNNNNNNNNNN--------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATATGGATTGGATTT-ATCCG-A-GTAATTTA-CGAA-CA-GC-T-A-AC-G--T-----------------T---TTCCGTT-GAAA-------T-TT---TT-----------TTT-AT-C-ATA--TTTCAATTTtgt
gi|6 : agcCAC-AATGC-TTTGTTA-A-T-GTT-G------TA--A------GTAAACACA-GCGA-AAA-CTTCAACGGCAAT-TT------AGGTT-TGAT-GA-CTTCT---ATTAGCGA-------AA-GTGAA-TTGG-AAAATCTGT-ATACTTGAGT-GTACTGA-T--NNNNNNNNN----------------N--------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGATTT-AT-CA-A-AT-ATTGAGCG-A-CA-AC-C-A-AC-G-AT-TAT-ACTGAGAACCG-T---TTTCTTT-AAAA-------C-TTCAGTTG-----------TT-ATCC-ATATTTTTCAATttgt
gi|7 : C-TTTGTAA-A-CCGCT-G------TT--A------GTAAACACG-GTGA-CAAACTTCAACGGCAAA-TT------AGGTT-TGAT-GA-TTTT-----ACA-CGATTTTTT-GA-GTGAATTTGG-AAAATCTAT-AAACTTAAGTCCTCGTGA-TA-TGT-AACGCNNNNNNN---------N--------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGATTT-AT-TG-ACGT-ATTGA----A-CATGCGT-A-AC-GAAT-TAATAT---GAA
gi|8 : gcTGTCA-A-C-GTT-G------TT--ACATGTAGTAAACACG-GCGA-CAA-CT--------------------AAGGT-TGAT-GA-TTTTT---AATA-CGA--------A-GTGAA-TTGG-AAAATCTAT-AAAC-TAAGT-CTTGTAA-TAGTGTAAACGCNNNNNNNNNNNNN---N--------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATGGATCTGGATTT-AT-CG-A-GT-ATTGAGCG-A-TA-GC-TCA-AC-G-ATATGA------GAACTG-A---TTTCGTT-GAAT-------T-TT---TTT----------TTT-AT-C-ATA-TTTTCAATTatccaagttgtcaacattttctcaatactttat
gi|9 : taGC-TTTGCAA-A-C-GTT-GACGTTATT--A------GTAAACATG-ACGA-CAA-CTTCAACGGCAAA-TT------AGGTT-TTAT-GA--TTTT---A--A-CGA-------AA-GTGCA-TAGG-AAAATTTGT-AACCTTGATT-CTAGTGA-TAGTGTAAACGC----------------N--------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC---CCATGGATTT-AT-CG-A-AT-ATTGAGGG-A-CA-GC-T-A-ACGG-AT-TAA-AA---GAAATG-T---TTTCTTC-CAAA---------CT---TTG-----------TT-GT-CTATA-TTTTCAATT
Alignments
lowQualScore : 22222222222222222 2222222222 4444444 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1111 111111111 222222222222
lowQualScore : 8 5 3 3 3 3 00000000000000000 3 3 3 7 22 2222222222 3 6 44 8888 0 3 7777777 3 7 7 3 4 3 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 66666 2 2 2 2 2 3 2 2 2 4 2 2 2222 2 777777 2 2 444 0 2 444444444 555 444444444444 2 2 9 3
lowQualScore : . . . . . . ................. . . . . .. .......... . . .. .... . . ....... . . . . . . .................................................................................................... ..... . . . . . . . . . . . . .... . ...... . . ... . . ......... ... ............ . . . .
lowQualScore : 0 0 6 6 6 6 88888888888888888 3 3 3 3 22 5555555555 3 7 99 5555 4 6 3333333 6 3 3 6 0 6 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 77777 5 5 5 5 5 4 4 4 4 7 4 4 1111 4 444444 1 7 777 6 9 888888888 000 111111111111 9 9 2 1
consensus : ACAC-AATGC-TTTGTAA-A-C-GTT-G------TT--A------GTAAACACG-GCGA-CAA-CTTCAACGGCAAT-TT------AGGTT-TGAT-GA-TTTTT---AATA-CGA--TTTT-AA-GTGAA-TTGG-AAAATCTAT-AAACTTAAGT-CTCGTGA-TAGTGTAAACGC-------A--------------TAGAAACCCGTCAAGTCATCGTTGTCTGTGTATGCACCCGAGAAAA-------------ANTGG-----------ATATG-----GATTT-AT-CG-A-GT-ATTGAGCG-A-CA-GC-T-A-AC-G-AT-TAA-AT---GAACTG-T---TTTCGTT-GAAA-------T-TT---TTG----------TTT-AT-C-ATA-TTTTCAATTTGTATC
Reference ( family-110 ) : ACAC-AATGC-TTTGTAA-A-C-GTT-G------TT--A------GTAAACACG-GCGA-CAA-CTTCAACGGCAAT-TT------AGGTT-TGAT-GA-TTTTT---AATA-CGA--TTTT-AA-GTGAA-TTGG-AAAATCTAT-AAACTTAAGT-CTCGTGA-TAGTGTAAACGC-------A--------------TAGAAACCCGTCAAGTCATCGTTGTCTGTGTATGCACCCGAGAAAN-------------ANNGG-----------NTNTG-----GATTT-AT-CG-A-GT-ATTGAGCG-A-CA-GC-T-A-AC-G-AT-TAA-AT---GAACTG-T---TTTCGTT-GAAA-------T-TT---TTG----------TTT-AT-C-ATA-TTTTCAATTTGTATC
gi|1 : CACGAATTG-TTTGTAA-AAC-GTT-G------TT--A------GTTA---------------CTTCAACGCCAAT-TT------A---T-TGATCGA-TTTT----AATA-CGAT-TTTT-GA-ATGAA-TTGGAAAAATCTAT-AAAGTTAAGG-TGTGTGAGTAGTGTAAACGC-------
gi|1 : cgagG-----GATTT-AT-CGAA-GT-ATT-AGCG-A-TA-GC-T-A-AC---AT-TTA-AT---GATTTG-T---TTTCATT-G--A-------T-TT---TTT----------TAA-AT-C-ATA-TTTTCAA-TTGTATCcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaatgggatttatcgaagtattagcgatagctaacatttaatgatttgttttcattgatttttttaaatcatattttcaattgtatcggct
gi|10 : cgagcacgaattgtttgtaaaacgttgttagttacttcaacgccaatttattgatcgattttaatacgatttttgaatgaattggaaaaatctataaagttaaggtgtgtgagtagtgtaaacgccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaatg-A-C-GTT-G------T----------GTAAAC-TG-GCGAACAA--TTCAACGGCAATATTG-----AGGTT-TGAT-GA-TTT------A-A-GGA-------AA-AGGAA-TTGGAAAAATCTGT-AGAggct
gi|11 : aaacgttg-A-C-GTT-G------TT--A------GTAAACAT--GCGA-CAA-CTTC-ACGGCAAT-ATGCATGGAGGTC-TGAT-tgtgttacaaatgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaacatgtgtatacaaaatatcgagcgcagctggctctccacggatttaatggactggatcgacgaaaatttatcatctataagttcaattt
gi|11 : aacgttgG-----GATTTTAT-CA-A-AT-ATCGAGCG-A-CA-GC-T-G-GC----T-CCA-AC---GGA---------TTTAAT-GAAA-------T-AT---T-A----------TCT-AT----TA-TGTTCAATTTGttaaaaatctgtagatgtgttacaaaggcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggattttatcaaatatcgagcgacagctggctccaacggatttaatgaaatattatctattatgttcaatttg
gi|12 : aacgttgacgttgttagtaaacatgcgacaacttcacggcaatatgcatggaggtctgatttaaaaatctgtagatgtgttacaaaggcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTGA-TGGTGTAAACGC-------A--------------TAGAAACCCGTCAAGTCATCGTTGTCTGTGTATGCACCCGAAAAAA-------------AC----------------ATG-----GATTT-AT-CG-A-AT-ATCGAGCG-A-CA-GC-T-A-AC-ATAT-TAA-AT---GAACTG-T---TTT-GTT-CAAA-------A-TT---TTG-----------TT-AC-CTATA-TTTTTAATTTGTAT
gi|13 : ATTA-AT-CG-A-GT-GCTGAGCG-A-TA-GC-T-A-AC-G-AT-TAA-AT---GAACTG-T---TTTCGTT-GAAATGTTTTTT-TT---TTGTTTTTTTTTTTTT-AT-C-ATA-TTTTCAATTTGTATC
gi|14 : T--A------GTAAACACG-GCGA-CTA-CT---------A----------AGGTC-TGAT-GA-TTTTT---AATA-CGA-------AA-GCGAA-TTGG-AAAATCGAT-CAACTTAAGT-TTCGTAA-TAGTGTAAg
gi|15 : g-------------AATGG-----------ATCTG-----GATTT--T-CG-A-GT-ATTTATCG-A-CA-GC-T-A----------------------TG-T---TTTTGTT-GAAA-------T-TT---TTT----------TTTTAT-C-ATA-TTTTCAATTTGT
gi|16 : cANTG-A-CA-GC-C-A-AC-ATAT-TAA-AT---GAACTG-T---TTT-GTTCGAAA---------TT---TTG-----------TT-AT-CTATA-TTTTCAATTT
gi|17 : ggtatgataaa-------------AATGG-----------ATCTG-----GATTT-AT-CG-A-GT-ATTTATCG-A-CA-GC-T-A-A--------------------TG-T---TTTCGTT-GAAA-------T-TT---TTT----------TTT-AT-C-ATA-TT
gi|18 : ATGCACCCGAGAAAA-------------ACA----------------TG-----GATTT-AT-GA-A-AT-ATCGAGCG-A-CA-GC-C-A-AT-G-AT-TAA-AT---GAACCG-T---TT
gi|19 : -----GATTT-AT-TG-A-GT-TTTGAACG-A-TA-GC-T-A-AC-A-AT-TAA-AT---GAA
gi|2 : ACAC-A-TGC-TTTGGTA-A-C-GCT-G------T---A------GTAAACACG-GCG--CAA-CTTCA-CGACAAT-TT------AGGTT-TGAT-GA--TTTT---AATA-C-ATTTTTT-GA-GTGAA-TTGG-AAAATTTAT-AAACTTAAGT-CTCGTGA-TAGTGTAAACGC-------AANNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NNNNN-----------NNATG------ATTT-AT-CG-A-GT-A-TGA-CG-A-TA-GC-T-A-AC-G-AT-TAA-AT---GAACTGCT---TTTCGTT-GAAA-------TGTT---TTA----------TTT-AT-C-ATA-TTTTCAATTTGTA
gi|3 : ACAC-AATGC-TTTGTAA-A-C-GTT-G------TT--A------GTAAACACG-GCGA-CAA-CTTCAACGGCAAT-TT------AGGTT-TGAT-GA-TTTTTTTTAATA-CGA--TTTTTGA-GTGAA-TTGG-AAAATCTAT-AAACATAAGT-CTCGTGA-TATTGTAAACGC-------A--------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NNNNN-----------NNNNN-----NNNNN-NT-CG-A-GT-ATTGAGCG-A-TA-GC-T-A-AC-G-AT-TAA-AT---GAATTG-T---TTTCGTT-GA-----------TT---TTG----------TTT-AT-C-ATG-TTTCCAATTTGTATC
gi|4 : C-GATGCCTTTGTAA---C-GTTTG------TTTTG------GTAA-CACG-GGGA-CAA-AT-CAACGGCAAT-TTTT----AGTCT-TGATTGA-TTTTT---AACA--GA--TTTT-AAAGTGAA-TTGG-AAAATCTAT-AAACTTTAGT-CTTGTGA-TAGTGTAAACGC-------AAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NNNNN-----------TTATG-----GATTG-AT-TA-A-GT-ATTGAGCG-ACCA-GTGT-ATAC-G--T-TA--------AACTG-TATATCTTATC-G-AA-------T-GT---TT-----------TTT-AT-
gi|5 : ATGC-TTTGTAAGA-C-GTT-G------TT--AACATTAGTAAACACGTGCGA-CTA-CT---------A----------AGGTCCTGAT-GAATTTTT---AAT--CGA-------AA-GCGAAATTGG-AAAATCGATCAAACTTAAGT-TTCGTAA-TAGTGTAAGCGC-------N--------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NNNNNNNNNNNNNNNCATATGGATTGGATTT-ATCCG-A-GTAATTTA-CGAA-CA-GC-T-A-AC-G--T-----------------T---TTCCGTT-GAAA-------T-TT---TT-----------TTT-AT-C-ATA--TTTCAATTTtgt
gi|6 : agcCAC-AATGC-TTTGTTA-A-T-GTT-G------TA--A------GTAAACACA-GCGA-AAA-CTTCAACGGCAAT-TT------AGGTT-TGAT-GA-CTTCT---ATTAGCGA-------AA-GTGAA-TTGG-AAAATCTGT-ATACTTGAGT-GTACTGA-T--NNNNNNNNN-------N--------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NNNNN-----------NNNTG-----GATTT-AT-CA-A-AT-ATTGAGCG-A-CA-AC-C-A-AC-G-AT-TAT-ACTGAGAACCG-T---TTTCTTT-AAAA-------C-TTCAGTTG-----------TT-ATCC-ATATTTTTCAATttgt
gi|7 : C-TTTGTAA-A-CCGCT-G------TT--A------GTAAACACG-GTGA-CAAACTTCAACGGCAAA-TT------AGGTT-TGAT-GA-TTTT-----ACA-CGATTTTTT-GA-GTGAATTTGG-AAAATCTAT-AAACTTAAGTCCTCGTGA-TA-TGT-AACGCNNNNNNNN--------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NNNNN-----------NNATG-----GATTT-AT-TG-ACGT-ATTGA----A-CATGCGT-A-AC-GAAT-TAATAT---GAA
gi|8 : gcTGTCA-A-C-GTT-G------TT--ACATGTAGTAAACACG-GCGA-CAA-CT--------------------AAGGT-TGAT-GA-TTTTT---AATA-CGA--------A-GTGAA-TTGG-AAAATCTAT-AAACT-AAGT-CTTGTAA-TAGTGTAAACGC-------N--------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATGG-----------ATCTG-----GATTT-AT-CG-A-GT-ATTGAGCG-A-TA-GC-TCA-AC-G-ATATGA------GAACTG-A---TTTCGTT-GAAT-------T-TT---TTT----------TTT-AT-C-ATA-TTTTCAATTatccaagttgtcaacattttctcaatactttat
gi|9 : taGC-TTTGCAA-A-C-GTT-GACGTTATT--A------GTAAACATG-ACGA-CAA-CTTCAACGGCAAA-TT------AGGTT-TTAT-GA--TTTT---A--A-CGA-------AA-GTGCA-TAGG-AAAATTTGT-AACCTTGATT-CTAGTGA-TAGTGTAAACGC-------N--------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NC--------------CCATG-----GATTT-AT-CG-A-AT-ATTGAGGG-A-CA-GC-T-A-ACGG-AT-TAA-AA---GAAATG-T---TTTCTTC-CAAA---------CT---TTG-----------TT-GT-CTATA-TTTTCAATT
Alignments
lowQualScore : 22222222222222222 2222222222 4444444 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1111 111111111 222222222222
lowQualScore : 8 5 3 3 3 3 00000000000000000 3 3 3 7 22 2222222222 3 6 44 8888 0 3 7777777 3 7 7 3 4 3 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2 2 2 2 2 3 2 2 2 4 2 2 2222 2 777777 2 2 444 0 2 444444444 555 444444444444 2 2 9 3
lowQualScore : . . . . . . ................. . . . . .. .......... . . .. .... . . ....... . . . . . . ...................................................................................................................... . . . . . . . . . . . . .... . ...... . . ... . . ......... ... ............ . . . .
lowQualScore : 0 0 6 6 6 6 88888888888888888 3 3 3 3 22 5555555555 3 7 99 5555 4 6 3333333 6 3 3 6 0 6 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 5 5 5 5 5 4 4 4 4 7 4 4 1111 4 444444 1 7 777 6 9 888888888 000 111111111111 9 9 2 1
consensus : ACAC-AATGC-TTTGTAA-A-C-GTT-G------TT--A------GTAAACACG-GCGA-CAA-CTTCAACGGCAAT-TT------AGGTT-TGAT-GA-TTTTT---AATA-CGA--TTTT-AA-GTGAA-TTGG-AAAATCTAT-AAACTTAAGT-CTCGTGA-TAGTGTAAACGC-------A-------------NAGAAACCCGTCAAGTCATCGTTGTCTGTGTATGCACCCGAGAAAA-------------ANTGG-----------A--------------TA-----TGGATTT-AT-CG-A-GT-ATTGAGCG-A-CA-GC-T-A-AC-G-AT-TAA-AT---GAACTG-T---TTTCGTT-GAAA-------T-TT---TTG----------TTT-AT-C-ATA-TTTTCAATTTGTATC
Reference ( family-110 ) : ACAC-AATGC-TTTGTAA-A-C-GTT-G------TT--A------GTAAACACG-GCGA-CAA-CTTCAACGGCAAT-TT------AGGTT-TGAT-GA-TTTTT---AATA-CGA--TTTT-AA-GTGAA-TTGG-AAAATCTAT-AAACTTAAGT-CTCGTGA-TAGTGTAAACGC-------A-------------TAGAAACCCGTCAAGTCATCGTTGTCTGTGTATGCACCCGAGAAAA-------------ANTGG-----------A--------------TA-----TGGATTT-AT-CG-A-GT-ATTGAGCG-A-CA-GC-T-A-AC-G-AT-TAA-AT---GAACTG-T---TTTCGTT-GAAA-------T-TT---TTG----------TTT-AT-C-ATA-TTTTCAATTTGTATC
gi|1 : CACGAATTG-TTTGTAA-AAC-GTT-G------TT--A------GTTA---------------CTTCAACGCCAAT-TT------A---T-TGATCGA-TTTT----AATA-CGAT-TTTT-GA-ATGAA-TTGGAAAAATCTAT-AAAGTTAAGG-TGTGTGAGTAGTGTAAACGC-------
gi|1 : cgagGGATTT-AT-CGAA-GT-ATT-AGCG-A-TA-GC-T-A-AC---AT-TTA-AT---GATTTG-T---TTTCATT-G--A-------T-TT---TTT----------TAA-AT-C-ATA-TTTTCAA-TTGTATCcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaatgggatttatcgaagtattagcgatagctaacatttaatgatttgttttcattgatttttttaaatcatattttcaattgtatcggct
gi|10 : cgagcacgaattgtttgtaaaacgttgttagttacttcaacgccaatttattgatcgattttaatacgatttttgaatgaattggaaaaatctataaagttaaggtgtgtgagtagtgtaaacgccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaatg-A-C-GTT-G------T----------GTAAAC-TG-GCGAACAA--TTCAACGGCAATATTG-----AGGTT-TGAT-GA-TTT------A-A-GGA-------AA-AGGAA-TTGGAAAAATCTGT-AGAggct
gi|11 : aaacgttg-A-C-GTT-G------TT--A------GTAAACAT--GCGA-CAA-CTTC-ACGGCAAT-ATGCATGGAGGTC-TGAT-tgtgttacaaatgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaacatgtgtatacaaaatatcgagcgcagctggctctccacggatttaatggactggatcgacgaaaatttatcatctataagttcaattt
gi|11 : aacgttgGGATTTTAT-CA-A-AT-ATCGAGCG-A-CA-GC-T-G-GC----T-CCA-AC---GGA---------TTTAAT-GAAA-------T-AT---T-A----------TCT-AT----TA-TGTTCAATTTGttaaaaatctgtagatgtgttacaaaggcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggattttatcaaatatcgagcgacagctggctccaacggatttaatgaaatattatctattatgttcaatttg
gi|12 : aacgttgacgttgttagtaaacatgcgacaacttcacggcaatatgcatggaggtctgatttaaaaatctgtagatgtgttacaaaggcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTGA-TGGTGTAAACGC-------A-------------TAGAAACCCGTCAAGTCATCGTTGTCTGTGTATGCACCCGAAAAAA-------------AC------------------------------A-----TGGATTT-AT-CG-A-AT-ATCGAGCG-A-CA-GC-T-A-AC-ATAT-TAA-AT---GAACTG-T---TTT-GTT-CAAA-------A-TT---TTG-----------TT-AC-CTATA-TTTTTAATTTGTAT
gi|13 : ATTA-AT-CG-A-GT-GCTGAGCG-A-TA-GC-T-A-AC-G-AT-TAA-AT---GAACTG-T---TTTCGTT-GAAATGTTTTTT-TT---TTGTTTTTTTTTTTTT-AT-C-ATA-TTTTCAATTTGTATC
gi|14 : T--A------GTAAACACG-GCGA-CTA-CT---------A----------AGGTC-TGAT-GA-TTTTT---AATA-CGA-------AA-GCGAA-TTGG-AAAATCGAT-CAACTTAAGT-TTCGTAA-TAGTGTAAg
gi|15 : g-------------AATGG-----------A--------------TC-----TGGATTT--T-CG-A-GT-ATTTATCG-A-CA-GC-T-A----------------------TG-T---TTTTGTT-GAAA-------T-TT---TTT----------TTTTAT-C-ATA-TTTTCAATTTGT
gi|16 : cANTG-A-CA-GC-C-A-AC-ATAT-TAA-AT---GAACTG-T---TTT-GTTCGAAA---------TT---TTG-----------TT-AT-CTATA-TTTTCAATTT
gi|17 : ggtatgataaa-------------AATGG-----------A--------------TC-----TGGATTT-AT-CG-A-GT-ATTTATCG-A-CA-GC-T-A-A--------------------TG-T---TTTCGTT-GAAA-------T-TT---TTT----------TTT-AT-C-ATA-TT
gi|18 : ATGCACCCGAGAAAA-------------AC------------------------------A-----TGGATTT-AT-GA-A-AT-ATCGAGCG-A-CA-GC-C-A-AT-G-AT-TAA-AT---GAACCG-T---TT
gi|19 : GATTT-AT-TG-A-GT-TTTGAACG-A-TA-GC-T-A-AC-A-AT-TAA-AT---GAA
gi|2 : ACAC-A-TGC-TTTGGTA-A-C-GCT-G------T---A------GTAAACACG-GCG--CAA-CTTCA-CGACAAT-TT------AGGTT-TGAT-GA--TTTT---AATA-C-ATTTTTT-GA-GTGAA-TTGG-AAAATTTAT-AAACTTAAGT-CTCGTGA-TAGTGTAAACGC-------AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NNNNN-----------N--------------NA-----T-GATTT-AT-CG-A-GT-A-TGA-CG-A-TA-GC-T-A-AC-G-AT-TAA-AT---GAACTGCT---TTTCGTT-GAAA-------TGTT---TTA----------TTT-AT-C-ATA-TTTTCAATTTGTA
gi|3 : ACAC-AATGC-TTTGTAA-A-C-GTT-G------TT--A------GTAAACACG-GCGA-CAA-CTTCAACGGCAAT-TT------AGGTT-TGAT-GA-TTTTTTTTAATA-CGA--TTTTTGA-GTGAA-TTGG-AAAATCTAT-AAACATAAGT-CTCGTGA-TATTGTAAACGC-------A-------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NNNNN-----------N--------------NN-----NNNNNNN-NT-CG-A-GT-ATTGAGCG-A-TA-GC-T-A-AC-G-AT-TAA-AT---GAATTG-T---TTTCGTT-GA-----------TT---TTG----------TTT-AT-C-ATG-TTTCCAATTTGTATC
gi|4 : C-GATGCCTTTGTAA---C-GTTTG------TTTTG------GTAA-CACG-GGGA-CAA-AT-CAACGGCAAT-TTTT----AGTCT-TGATTGA-TTTTT---AACA--GA--TTTT-AAAGTGAA-TTGG-AAAATCTAT-AAACTTTAGT-CTTGTGA-TAGTGTAAACGC-------A-------------AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NNNNN-----------NNNNNNNNNNNNNNTTA-----TGGATTG-AT-TA-A-GT-ATTGAGCG-ACCA-GTGT-ATAC-G--T-TA--------AACTG-TATATCTTATC-G-AA-------T-GT---TT-----------TTT-AT-
gi|5 : ATGC-TTTGTAAGA-C-GTT-G------TT--AACATTAGTAAACACGTGCGA-CTA-CT---------A----------AGGTCCTGAT-GAATTTTT---AAT--CGA-------AA-GCGAAATTGG-AAAATCGATCAAACTTAAGT-TTCGTAA-TAGTGTAAGCGC-------N-------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NNNNNNNNNNNNNNNCA--------------TATGGATTGGATTT-ATCCG-A-GTAATTTA-CGAA-CA-GC-T-A-AC-G--T-----------------T---TTCCGTT-GAAA-------T-TT---TT-----------TTT-AT-C-ATA--TTTCAATTTtgt
gi|6 : agcCAC-AATGC-TTTGTTA-A-T-GTT-G------TA--A------GTAAACACA-GCGA-AAA-CTTCAACGGCAAT-TT------AGGTT-TGAT-GA-CTTCT---ATTAGCGA-------AA-GTGAA-TTGG-AAAATCTGT-ATACTTGAGT-GTACTGA-T--NNNNNNNNN-------N-------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NNNNN-----------N--------------NN-----TGGATTT-AT-CA-A-AT-ATTGAGCG-A-CA-AC-C-A-AC-G-AT-TAT-ACTGAGAACCG-T---TTTCTTT-AAAA-------C-TTCAGTTG-----------TT-ATCC-ATATTTTTCAATttgt
gi|7 : C-TTTGTAA-A-CCGCT-G------TT--A------GTAAACACG-GTGA-CAAACTTCAACGGCAAA-TT------AGGTT-TGAT-GA-TTTT-----ACA-CGATTTTTT-GA-GTGAATTTGG-AAAATCTAT-AAACTTAAGTCCTCGTGA-TA-TGT-AACGCNNNNNNNN-------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NNNNN-----------N--------------NA-----TGGATTT-AT-TG-ACGT-ATTGA----A-CATGCGT-A-AC-GAAT-TAATAT---GAA
gi|8 : gcTGTCA-A-C-GTT-G------TT--ACATGTAGTAAACACG-GCGA-CAA-CT--------------------AAGGT-TGAT-GA-TTTTT---AATA-CGA--------A-GTGAA-TTGG-AAAATCTAT-AAACT-AAGT-CTTGTAA-TAGTGTAAACGC-------N-------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATGG-----------A--------------TC-----TGGATTT-AT-CG-A-GT-ATTGAGCG-A-TA-GC-TCA-AC-G-ATATGA------GAACTG-A---TTTCGTT-GAAT-------T-TT---TTT----------TTT-AT-C-ATA-TTTTCAATTatccaagttgtcaacattttctcaatactttat
gi|9 : taGC-TTTGCAA-A-C-GTT-GACGTTATT--A------GTAAACATG-ACGA-CAA-CTTCAACGGCAAA-TT------AGGTT-TTAT-GA--TTTT---A--A-CGA-------AA-GTGCA-TAGG-AAAATTTGT-AACCTTGATT-CTAGTGA-TAGTGTAAACGC-------N-------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NCC----------------------------CA-----TGGATTT-AT-CG-A-AT-ATTGAGGG-A-CA-GC-T-A-ACGG-AT-TAA-AA---GAAATG-T---TTTCTTC-CAAA---------CT---TTG-----------TT-GT-CTATA-TTTTCAATT
Alignments
lowQualScore : 22222222222222222 2222222222 4444444 1111111 777777777777777777777777777777777777777777777777777 111111111111 1111 111111111 222222222222
lowQualScore : 8 5 3 3 3 3 00000000000000000 3 3 3 7 22 2222222222 3 6 44 8888 0 3 7777777 3 7 7 3 4 3 3333333 1 0 111111111111111111111111111111111111111111111111111 333333333333 2 2 2 2 2 3 2 2 2 4 2 2 2222 2 777777 2 2 444 0 2 444444444 555 444444444444 2 2 9 3
lowQualScore : . . . . . . ................. . . . . .. .......... . . .. .... . . ....... . . . . . . ....... . . ................................................... ............ . . . . . . . . . . . . .... . ...... . . ... . . ......... ... ............ . . . .
lowQualScore : 0 0 6 6 6 6 88888888888888888 3 3 3 3 22 5555555555 3 7 99 5555 4 6 3333333 6 3 3 6 0 6 0000000 0 4 222222222222222222222222222222222222222222222222222 777777777777 5 5 5 5 5 4 4 4 4 7 4 4 1111 4 444444 1 7 777 6 9 888888888 000 111111111111 9 9 2 1
consensus : ACAC-AATGC-TTTGTAA-A-C-GTT-G------TT--A------GTAAACACG-GCGA-CAA-CTTCAACGGCAAT-TT------AGGTT-TGAT-GA-TTTTT---AATA-CGA--TTTT-AA-GTGAA-TTGG-AAAATCTAT-AAACTTAAGT-CTCGTGA-TAGTGTAAACGC-------AAAGAAACCCGTCAAGTCATCGTTGTCTGTGTATGCACCCGAGAAAA-------------ANTGG-----------A--------------TA-----TG------------GATTT-AT-CG-A-GT-ATTGAGCG-A-CA-GC-T-A-AC-G-AT-TAA-AT---GAACTG-T---TTTCGTT-GAAA-------T-TT---TTG----------TTT-AT-C-ATA-TTTTCAATTTGTATC
Reference ( family-110 ) : ACAC-AATGC-TTTGTAA-A-C-GTT-G------TT--A------GTAAACACG-GCGA-CAA-CTTCAACGGCAAT-TT------AGGTT-TGAT-GA-TTTTT---AATA-CGA--TTTT-AA-GTGAA-TTGG-AAAATCTAT-AAACTTAAGT-CTCGTGA-TAGTGTAAACGC-------ANAGAAACCCGTCAAGTCATCGTTGTCTGTGTATGCACCCGAGAAAA-------------ANTGG-----------A--------------TA-----TG------------GATTT-AT-CG-A-GT-ATTGAGCG-A-CA-GC-T-A-AC-G-AT-TAA-AT---GAACTG-T---TTTCGTT-GAAA-------T-TT---TTG----------TTT-AT-C-ATA-TTTTCAATTTGTATC
gi|1 : CACGAATTG-TTTGTAA-AAC-GTT-G------TT--A------GTTA---------------CTTCAACGCCAAT-TT------A---T-TGATCGA-TTTT----AATA-CGAT-TTTT-GA-ATGAA-TTGGAAAAATCTAT-AAAGTTAAGG-TGTGTGAGTAGTGTAAACGC-------
gi|1 : cgagG------------GATTT-AT-CGAA-GT-ATT-AGCG-A-TA-GC-T-A-AC---AT-TTA-AT---GATTTG-T---TTTCATT-G--A-------T-TT---TTT----------TAA-AT-C-ATA-TTTTCAA-TTGTATCcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaatgggatttatcgaagtattagcgatagctaacatttaatgatttgttttcattgatttttttaaatcatattttcaattgtatcggct
gi|10 : cgagcacgaattgtttgtaaaacgttgttagttacttcaacgccaatttattgatcgattttaatacgatttttgaatgaattggaaaaatctataaagttaaggtgtgtgagtagtgtaaacgccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaatg-A-C-GTT-G------T----------GTAAAC-TG-GCGAACAA--TTCAACGGCAATATTG-----AGGTT-TGAT-GA-TTT------A-A-GGA-------AA-AGGAA-TTGGAAAAATCTGT-AGAggct
gi|11 : aaacgttg-A-C-GTT-G------TT--A------GTAAACAT--GCGA-CAA-CTTC-ACGGCAAT-ATGCATGGAGGTC-TGAT-tgtgttacaaatgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaacatgtgtatacaaaatatcgagcgcagctggctctccacggatttaatggactggatcgacgaaaatttatcatctataagttcaattt
gi|11 : aacgttgG------------GATTTTAT-CA-A-AT-ATCGAGCG-A-CA-GC-T-G-GC----T-CCA-AC---GGA---------TTTAAT-GAAA-------T-AT---T-A----------TCT-AT----TA-TGTTCAATTTGttaaaaatctgtagatgtgttacaaaggcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggattttatcaaatatcgagcgacagctggctccaacggatttaatgaaatattatctattatgttcaatttg
gi|12 : aacgttgacgttgttagtaaacatgcgacaacttcacggcaatatgcatggaggtctgatttaaaaatctgtagatgtgttacaaaggcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTGA-TGGTGTAAACGC-------ATAGAAACCCGTCAAGTCATCGTTGTCTGTGTATGCACCCGAAAAAA-------------AC------------------------------A-----TG------------GATTT-AT-CG-A-AT-ATCGAGCG-A-CA-GC-T-A-AC-ATAT-TAA-AT---GAACTG-T---TTT-GTT-CAAA-------A-TT---TTG-----------TT-AC-CTATA-TTTTTAATTTGTAT
gi|13 : ATTA-AT-CG-A-GT-GCTGAGCG-A-TA-GC-T-A-AC-G-AT-TAA-AT---GAACTG-T---TTTCGTT-GAAATGTTTTTT-TT---TTGTTTTTTTTTTTTT-AT-C-ATA-TTTTCAATTTGTATC
gi|14 : T--A------GTAAACACG-GCGA-CTA-CT---------A----------AGGTC-TGAT-GA-TTTTT---AATA-CGA-------AA-GCGAA-TTGG-AAAATCGAT-CAACTTAAGT-TTCGTAA-TAGTGTAAg
gi|15 : g-------------AATGG-----------A--------------TC-----TG------------GATTT--T-CG-A-GT-ATTTATCG-A-CA-GC-T-A----------------------TG-T---TTTTGTT-GAAA-------T-TT---TTT----------TTTTAT-C-ATA-TTTTCAATTTGT
gi|16 : cANTG-A-CA-GC-C-A-AC-ATAT-TAA-AT---GAACTG-T---TTT-GTTCGAAA---------TT---TTG-----------TT-AT-CTATA-TTTTCAATTT
gi|17 : ggtatgataaa-------------AATGG-----------A--------------TC-----TG------------GATTT-AT-CG-A-GT-ATTTATCG-A-CA-GC-T-A-A--------------------TG-T---TTTCGTT-GAAA-------T-TT---TTT----------TTT-AT-C-ATA-TT
gi|18 : ATGCACCCGAGAAAA-------------AC------------------------------A-----TG------------GATTT-AT-GA-A-AT-ATCGAGCG-A-CA-GC-C-A-AT-G-AT-TAA-AT---GAACCG-T---TT
gi|19 : ------------GATTT-AT-TG-A-GT-TTTGAACG-A-TA-GC-T-A-AC-A-AT-TAA-AT---GAA
gi|2 : ACAC-A-TGC-TTTGGTA-A-C-GCT-G------T---A------GTAAACACG-GCG--CAA-CTTCA-CGACAAT-TT------AGGTT-TGAT-GA--TTTT---AATA-C-ATTTTTT-GA-GTGAA-TTGG-AAAATTTAT-AAACTTAAGT-CTCGTGA-TAGTGTAAACGC-------AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NNNNN-----------N--------------NN-----NNNNNNNNNNNNATGATTT-AT-CG-A-GT-A-TGA-CG-A-TA-GC-T-A-AC-G-AT-TAA-AT---GAACTGCT---TTTCGTT-GAAA-------TGTT---TTA----------TTT-AT-C-ATA-TTTTCAATTTGTA
gi|3 : ACAC-AATGC-TTTGTAA-A-C-GTT-G------TT--A------GTAAACACG-GCGA-CAA-CTTCAACGGCAAT-TT------AGGTT-TGAT-GA-TTTTTTTTAATA-CGA--TTTTTGA-GTGAA-TTGG-AAAATCTAT-AAACATAAGT-CTCGTGA-TATTGTAAACGC-------ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NNNNN-----------N--------------NN-----NN------------NNNNN-NT-CG-A-GT-ATTGAGCG-A-TA-GC-T-A-AC-G-AT-TAA-AT---GAATTG-T---TTTCGTT-GA-----------TT---TTG----------TTT-AT-C-ATG-TTTCCAATTTGTATC
gi|4 : C-GATGCCTTTGTAA---C-GTTTG------TTTTG------GTAA-CACG-GGGA-CAA-AT-CAACGGCAAT-TTTT----AGTCT-TGATTGA-TTTTT---AACA--GA--TTTT-AAAGTGAA-TTGG-AAAATCTAT-AAACTTTAGT-CTTGTGA-TAGTGTAAACGC-------AAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NNNNN-----------NNNNNNNNNNNNNNTTA-----TG------------GATTG-AT-TA-A-GT-ATTGAGCG-ACCA-GTGT-ATAC-G--T-TA--------AACTG-TATATCTTATC-G-AA-------T-GT---TT-----------TTT-AT-
gi|5 : ATGC-TTTGTAAGA-C-GTT-G------TT--AACATTAGTAAACACGTGCGA-CTA-CT---------A----------AGGTCCTGAT-GAATTTTT---AAT--CGA-------AA-GCGAAATTGG-AAAATCGATCAAACTTAAGT-TTCGTAA-TAGTGTAAGCGC-------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NNNNNNNNNNNNNNNCA--------------TATGGATTG------------GATTT-ATCCG-A-GTAATTTA-CGAA-CA-GC-T-A-AC-G--T-----------------T---TTCCGTT-GAAA-------T-TT---TT-----------TTT-AT-C-ATA--TTTCAATTTtgt
gi|6 : agcCAC-AATGC-TTTGTTA-A-T-GTT-G------TA--A------GTAAACACA-GCGA-AAA-CTTCAACGGCAAT-TT------AGGTT-TGAT-GA-CTTCT---ATTAGCGA-------AA-GTGAA-TTGG-AAAATCTGT-ATACTTGAGT-GTACTGA-T--NNNNNNNNN-------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NNNNN-----------N--------------NN-----TG------------GATTT-AT-CA-A-AT-ATTGAGCG-A-CA-AC-C-A-AC-G-AT-TAT-ACTGAGAACCG-T---TTTCTTT-AAAA-------C-TTCAGTTG-----------TT-ATCC-ATATTTTTCAATttgt
gi|7 : C-TTTGTAA-A-CCGCT-G------TT--A------GTAAACACG-GTGA-CAAACTTCAACGGCAAA-TT------AGGTT-TGAT-GA-TTTT-----ACA-CGATTTTTT-GA-GTGAATTTGG-AAAATCTAT-AAACTTAAGTCCTCGTGA-TA-TGT-AACGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NNNNN-----------N--------------NA-----TG------------GATTT-AT-TG-ACGT-ATTGA----A-CATGCGT-A-AC-GAAT-TAATAT---GAA
gi|8 : gcTGTCA-A-C-GTT-G------TT--ACATGTAGTAAACACG-GCGA-CAA-CT--------------------AAGGT-TGAT-GA-TTTTT---AATA-CGA--------A-GTGAA-TTGG-AAAATCTAT-AAACT-AAGT-CTTGTAA-TAGTGTAAACGC-------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATGG-----------A--------------TC-----TG------------GATTT-AT-CG-A-GT-ATTGAGCG-A-TA-GC-TCA-AC-G-ATATGA------GAACTG-A---TTTCGTT-GAAT-------T-TT---TTT----------TTT-AT-C-ATA-TTTTCAATTatccaagttgtcaacattttctcaatactttat
gi|9 : taGC-TTTGCAA-A-C-GTT-GACGTTATT--A------GTAAACATG-ACGA-CAA-CTTCAACGGCAAA-TT------AGGTT-TTAT-GA--TTTT---A--A-CGA-------AA-GTGCA-TAGG-AAAATTTGT-AACCTTGATT-CTAGTGA-TAGTGTAAACGC-------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NCC----------------------------CA-----TG------------GATTT-AT-CG-A-AT-ATTGAGGG-A-CA-GC-T-A-ACGG-AT-TAA-AA---GAAATG-T---TTTCTTC-CAAA---------CT---TTG-----------TT-GT-CTATA-TTTTCAATT
Alignments
lowQualScore : 22222222222222222 2222222222 4444444 1111111 777777777777777777777777777777777777777777777777777 111111111111 1111 111111111 222222222222
lowQualScore : 8 5 3 3 3 3 00000000000000000 3 3 3 7 22 2222222222 3 6 44 8888 0 3 7777777 3 7 7 3 4 3 3333333 0 0 111111111111111111111111111111111111111111111111111 333333333333 2 2 2 2 2 3 2 2 2 4 2 2 2222 2 777777 2 2 444 0 2 444444444 555 444444444444 2 2 9 3
lowQualScore : . . . . . . ................. . . . . .. .......... . . .. .... . . ....... . . . . . . ....... . . ................................................... ............ . . . . . . . . . . . . .... . ...... . . ... . . ......... ... ............ . . . .
lowQualScore : 0 0 6 6 6 6 88888888888888888 3 3 3 3 22 5555555555 3 7 99 5555 4 6 3333333 6 3 3 6 0 6 0000000 6 4 222222222222222222222222222222222222222222222222222 777777777777 5 5 5 5 5 4 4 4 4 7 4 4 1111 4 444444 1 7 777 6 9 888888888 000 111111111111 9 9 2 1
consensus : ACAC-AATGC-TTTGTAA-A-C-GTT-G------TT--A------GTAAACACG-GCGA-CAA-CTTCAACGGCAAT-TT------AGGTT-TGAT-GA-TTTTT---AATA-CGA--TTTT-AA-GTGAA-TTGG-AAAATCTAT-AAACTTAAGT-CTCGTGA-TAGTGTAAACGC-------AAAGAAACCCGTCAAGTCATCGTTGTCTGTGTATGCACCCGAGAAAA-------------ANTGG-----------A--------------TA-----TG------------GATTT-AT-CG-A-GT-ATTGAGCG-A-CA-GC-T-A-AC-G-AT-TAA-AT---GAACTG-T---TTTCGTT-GAAA-------T-TT---TTG----------TTT-AT-C-ATA-TTTTCAATTTGTATC
Reference ( family-110 ) : ACAC-AATGC-TTTGTAA-A-C-GTT-G------TT--A------GTAAACACG-GCGA-CAA-CTTCAACGGCAAT-TT------AGGTT-TGAT-GA-TTTTT---AATA-CGA--TTTT-AA-GTGAA-TTGG-AAAATCTAT-AAACTTAAGT-CTCGTGA-TAGTGTAAACGC-------AAAGAAACCCGTCAAGTCATCGTTGTCTGTGTATGCACCCGAGAAAA-------------ANTGG-----------A--------------TA-----TG------------GATTT-AT-CG-A-GT-ATTGAGCG-A-CA-GC-T-A-AC-G-AT-TAA-AT---GAACTG-T---TTTCGTT-GAAA-------T-TT---TTG----------TTT-AT-C-ATA-TTTTCAATTTGTATC
gi|1 : CACGAATTG-TTTGTAA-AAC-GTT-G------TT--A------GTTA---------------CTTCAACGCCAAT-TT------A---T-TGATCGA-TTTT----AATA-CGAT-TTTT-GA-ATGAA-TTGGAAAAATCTAT-AAAGTTAAGG-TGTGTGAGTAGTGTAAACGC-------
gi|1 : cgagG------------GATTT-AT-CGAA-GT-ATT-AGCG-A-TA-GC-T-A-AC---AT-TTA-AT---GATTTG-T---TTTCATT-G--A-------T-TT---TTT----------TAA-AT-C-ATA-TTTTCAA-TTGTATCcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaatgggatttatcgaagtattagcgatagctaacatttaatgatttgttttcattgatttttttaaatcatattttcaattgtatcggct
gi|10 : cgagcacgaattgtttgtaaaacgttgttagttacttcaacgccaatttattgatcgattttaatacgatttttgaatgaattggaaaaatctataaagttaaggtgtgtgagtagtgtaaacgccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaatg-A-C-GTT-G------T----------GTAAAC-TG-GCGAACAA--TTCAACGGCAATATTG-----AGGTT-TGAT-GA-TTT------A-A-GGA-------AA-AGGAA-TTGGAAAAATCTGT-AGAggct
gi|11 : aaacgttg-A-C-GTT-G------TT--A------GTAAACAT--GCGA-CAA-CTTC-ACGGCAAT-ATGCATGGAGGTC-TGAT-tgtgttacaaatgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaacatgtgtatacaaaatatcgagcgcagctggctctccacggatttaatggactggatcgacgaaaatttatcatctataagttcaattt
gi|11 : aacgttgG------------GATTTTAT-CA-A-AT-ATCGAGCG-A-CA-GC-T-G-GC----T-CCA-AC---GGA---------TTTAAT-GAAA-------T-AT---T-A----------TCT-AT----TA-TGTTCAATTTGttaaaaatctgtagatgtgttacaaaggcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggattttatcaaatatcgagcgacagctggctccaacggatttaatgaaatattatctattatgttcaatttg
gi|12 : aacgttgacgttgttagtaaacatgcgacaacttcacggcaatatgcatggaggtctgatttaaaaatctgtagatgtgttacaaaggcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTGA-TGGTGTAAACGC-------ATAGAAACCCGTCAAGTCATCGTTGTCTGTGTATGCACCCGAAAAAA-------------AC------------------------------A-----TG------------GATTT-AT-CG-A-AT-ATCGAGCG-A-CA-GC-T-A-AC-ATAT-TAA-AT---GAACTG-T---TTT-GTT-CAAA-------A-TT---TTG-----------TT-AC-CTATA-TTTTTAATTTGTAT
gi|13 : ATTA-AT-CG-A-GT-GCTGAGCG-A-TA-GC-T-A-AC-G-AT-TAA-AT---GAACTG-T---TTTCGTT-GAAATGTTTTTT-TT---TTGTTTTTTTTTTTTT-AT-C-ATA-TTTTCAATTTGTATC
gi|14 : T--A------GTAAACACG-GCGA-CTA-CT---------A----------AGGTC-TGAT-GA-TTTTT---AATA-CGA-------AA-GCGAA-TTGG-AAAATCGAT-CAACTTAAGT-TTCGTAA-TAGTGTAAg
gi|15 : g-------------AATGG-----------A--------------TC-----TG------------GATTT--T-CG-A-GT-ATTTATCG-A-CA-GC-T-A----------------------TG-T---TTTTGTT-GAAA-------T-TT---TTT----------TTTTAT-C-ATA-TTTTCAATTTGT
gi|16 : cANTG-A-CA-GC-C-A-AC-ATAT-TAA-AT---GAACTG-T---TTT-GTTCGAAA---------TT---TTG-----------TT-AT-CTATA-TTTTCAATTT
gi|17 : ggtatgataaa-------------AATGG-----------A--------------TC-----TG------------GATTT-AT-CG-A-GT-ATTTATCG-A-CA-GC-T-A-A--------------------TG-T---TTTCGTT-GAAA-------T-TT---TTT----------TTT-AT-C-ATA-TT
gi|18 : ATGCACCCGAGAAAA-------------AC------------------------------A-----TG------------GATTT-AT-GA-A-AT-ATCGAGCG-A-CA-GC-C-A-AT-G-AT-TAA-AT---GAACCG-T---TT
gi|19 : ------------GATTT-AT-TG-A-GT-TTTGAACG-A-TA-GC-T-A-AC-A-AT-TAA-AT---GAA
gi|2 : ACAC-A-TGC-TTTGGTA-A-C-GCT-G------T---A------GTAAACACG-GCG--CAA-CTTCA-CGACAAT-TT------AGGTT-TGAT-GA--TTTT---AATA-C-ATTTTTT-GA-GTGAA-TTGG-AAAATTTAT-AAACTTAAGT-CTCGTGA-TAGTGTAAACGC-------AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NNNNN-----------N--------------NN-----NNNNNNNNNNNNATGATTT-AT-CG-A-GT-A-TGA-CG-A-TA-GC-T-A-AC-G-AT-TAA-AT---GAACTGCT---TTTCGTT-GAAA-------TGTT---TTA----------TTT-AT-C-ATA-TTTTCAATTTGTA
gi|3 : ACAC-AATGC-TTTGTAA-A-C-GTT-G------TT--A------GTAAACACG-GCGA-CAA-CTTCAACGGCAAT-TT------AGGTT-TGAT-GA-TTTTTTTTAATA-CGA--TTTTTGA-GTGAA-TTGG-AAAATCTAT-AAACATAAGT-CTCGTGA-TATTGTAAACGC-------ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NNNNN-----------N--------------NN-----NN------------NNNNN-NT-CG-A-GT-ATTGAGCG-A-TA-GC-T-A-AC-G-AT-TAA-AT---GAATTG-T---TTTCGTT-GA-----------TT---TTG----------TTT-AT-C-ATG-TTTCCAATTTGTATC
gi|4 : C-GATGCCTTTGTAA---C-GTTTG------TTTTG------GTAA-CACG-GGGA-CAA-AT-CAACGGCAAT-TTTT----AGTCT-TGATTGA-TTTTT---AACA--GA--TTTT-AAAGTGAA-TTGG-AAAATCTAT-AAACTTTAGT-CTTGTGA-TAGTGTAAACGC-------AAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NNNNN-----------NNNNNNNNNNNNNNTTA-----TG------------GATTG-AT-TA-A-GT-ATTGAGCG-ACCA-GTGT-ATAC-G--T-TA--------AACTG-TATATCTTATC-G-AA-------T-GT---TT-----------TTT-AT-
gi|5 : ATGC-TTTGTAAGA-C-GTT-G------TT--AACATTAGTAAACACGTGCGA-CTA-CT---------A----------AGGTCCTGAT-GAATTTTT---AAT--CGA-------AA-GCGAAATTGG-AAAATCGATCAAACTTAAGT-TTCGTAA-TAGTGTAAGCGC-------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NNNNNNNNNNNNNNNCA--------------TATGGATTG------------GATTT-ATCCG-A-GTAATTTA-CGAA-CA-GC-T-A-AC-G--T-----------------T---TTCCGTT-GAAA-------T-TT---TT-----------TTT-AT-C-ATA--TTTCAATTTtgt
gi|6 : agcCAC-AATGC-TTTGTTA-A-T-GTT-G------TA--A------GTAAACACA-GCGA-AAA-CTTCAACGGCAAT-TT------AGGTT-TGAT-GA-CTTCT---ATTAGCGA-------AA-GTGAA-TTGG-AAAATCTGT-ATACTTGAGT-GTACTGA-T--NNNNNNNNN-------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NNNNN-----------N--------------NN-----TG------------GATTT-AT-CA-A-AT-ATTGAGCG-A-CA-AC-C-A-AC-G-AT-TAT-ACTGAGAACCG-T---TTTCTTT-AAAA-------C-TTCAGTTG-----------TT-ATCC-ATATTTTTCAATttgt
gi|7 : C-TTTGTAA-A-CCGCT-G------TT--A------GTAAACACG-GTGA-CAAACTTCAACGGCAAA-TT------AGGTT-TGAT-GA-TTTT-----ACA-CGATTTTTT-GA-GTGAATTTGG-AAAATCTAT-AAACTTAAGTCCTCGTGA-TA-TGT-AACGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NNNNN-----------N--------------NA-----TG------------GATTT-AT-TG-ACGT-ATTGA----A-CATGCGT-A-AC-GAAT-TAATAT---GAA
gi|8 : gcTGTCA-A-C-GTT-G------TT--ACATGTAGTAAACACG-GCGA-CAA-CT--------------------AAGGT-TGAT-GA-TTTTT---AATA-CGA--------A-GTGAA-TTGG-AAAATCTAT-AAACT-AAGT-CTTGTAA-TAGTGTAAACGC-------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATGG-----------A--------------TC-----TG------------GATTT-AT-CG-A-GT-ATTGAGCG-A-TA-GC-TCA-AC-G-ATATGA------GAACTG-A---TTTCGTT-GAAT-------T-TT---TTT----------TTT-AT-C-ATA-TTTTCAATTatccaagttgtcaacattttctcaatactttat
gi|9 : taGC-TTTGCAA-A-C-GTT-GACGTTATT--A------GTAAACATG-ACGA-CAA-CTTCAACGGCAAA-TT------AGGTT-TTAT-GA--TTTT---A--A-CGA-------AA-GTGCA-TAGG-AAAATTTGT-AACCTTGATT-CTAGTGA-TAGTGTAAACGC-------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NCC----------------------------CA-----TG------------GATTT-AT-CG-A-AT-ATTGAGGG-A-CA-GC-T-A-ACGG-AT-TAA-AA---GAAATG-T---TTTCTTC-CAAA---------CT---TTG-----------TT-GT-CTATA-TTTTCAATT
blockSeqs : . C G . C T TTAACATTA T A A T AA TATGCATGG C T AT TTTT G TTTTTT A A A C C . NNNNNNN NNNNNNNNNNNNNNNCATATGGAT NNNNNNNNNNAT T C . C A G A C T G C T ATA A ACTGA C C ATA C TGTTTTTT CAG GTTTTTTTTTTT T C T T
blockSeqs : . . . . . . TTACATGTA . . . T AA TATTG . . T T . TTTTTT . T . . . . . NNNNNNNNNNNNNNNNNNNTTA . . . . . . G . . . G . . ATA . TAT C . . . TG . AT . . T .
blockSeqs : . . . . . . ACGTTATTA . . . T AA TTTTT . . T T . TTTTT . . . . . . . NNNNNNNNNNNNCAATGGATC . . . . . . G . . . . . . GAA . AC C . . . T . TT . . T .
blockSeqs : . . . . . . TTTTG . . . T AA TTT . . T T . TTTT . . . . . . . AATGGATC . . . . . . T . . . . . . GGA . AT C . . . A . TT . . . .
blockSeqs : . . . . . TTA . . . T AA TTT . . T T . . . . . . . . . AATGGATC . . . . . . N . . . . . . GA . AT C . . . T . AT . . . .
blockSeqs : . . . . . TTA . . . T AA TTT . . C T . . . . . . . . . NNNNNNNN . . . . . . T . . . . . . GA . AT T . . . T . GT . . . .
blockSeqs : . . . . . TAA . . . T A ATT . . T T . . . . . . . . . NNNNNNNN . . . . . . G . . . . . . AA . AT C . . . T . TT . . . .
blockSeqs : . . . . TTA . . . . A ATT . . T T . . . . . . . . . NNNNNNNN . . . . . . A . . . . . . GA . AT C . . . T . G . . . .
blockSeqs : . . . . TA . . . . . . . . . . . . . . . . . . . NNNNNNNA . . . . . . G . . . . . . GA . AT C . . . C . G . . . .
blockSeqs : . . . . T . . . . . . . . . . . . . . . . . NCCCA . . . . . . G . . . . . . GA . AT A . . . T . T . . . .
blockSeqs : . . . . . . . . ACA . . . . . . G . . . . . . GA . AA . . . . . . T . . . .
blockSeqs : . . . . . . G . . . . . . G . . . . . . . . G . . . .
blockSeqs : . . . . . . G . . . . . . G . . . . . . . . G . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqCons : T*** ******* GA** GT**********
originalCons : ACAC-AATGC-TTTGTAA-A-C-GTT-G------TT--A------GTAAACACG-GCGA-CAA-CTTCAACGGCAAT-TT------AGGTT-TGAT-GA-TTTTT---AATA-CGA--TTTT-AA-GTGAA-TTGG-AAAATCTAT-AAACTTAAGT-CTCGTGA-TAGTGTAAACGC-------AAAGAAACCCGTCAAGTCATCGTTGTCTGTGTATGCACCCGAGAAAA-------------ANTGG-----------A--------------TA-----TG------------GATTT-AT-CG-A-GT-ATTGAGCG-A-CA-GC-T-A-AC-G-AT-TAA-AT---GAACTG-T---TTTCGTT-GAAA-------T-TT---TTG----------TTT-AT-C-ATA-TTTTCAATTTGTATC
finalCons : ACAC-AATGC-TTTGTAA-A-C-GTT-G------TT--A------GTAAACACG-GCGA-CAA-CTTCAACGGCAAT-TT------AGGTT-TGAT-GA-TTTTT---AATA-CGA-------AA-GTGAA-TTGG-AAAATCTAT-AAACTTAAGT-CTCGTGA-TAGTGTAAACGC-------AAAGAAACCCGTCAAGTCATCGTTGTCTGTGTATGCACCCGAGAAAA-------------ANTGG-----------A--------------TA-----TG------------GATTT-AT-CG-A-GT-ATTGAGCG-A-CA-GC-T-A-ACGA--T-TAA-AT---GAACTG-T---TTTCGTT-GAAA-------T-TT---TTGT----------TT-AT-C-ATA-TTTTCAATTTGTATC
Alignments
lowQualScore : 22222222222222222 2222222222 1111 444444 1111111 777777777777777777777777777777777777777777777777777 111111111111 1111 111111111 222222222222
lowQualScore : 8 5 3 3 3 3 00000000000000000 3 3 3 7 22 2222222222 3 6 44 0000 2 3 888888 7 3 3 3 4 3 3333333 0 0 111111111111111111111111111111111111111111111111111 333333333333 2 2 2 2 2 3 2 2 2 4 2 2 2222 2 777777 2 2 444 0 2 444444444 555 444444444444 2 2 9 3
lowQualScore : . . . . . . ................. . . . . .. .......... . . .. .... . . ...... . . . . . . ....... . . ................................................... ............ . . . . . . . . . . . . .... . ...... . . ... . . ......... ... ............ . . . .
lowQualScore : 0 0 6 6 6 6 88888888888888888 3 3 3 3 22 5555555555 3 7 99 7777 3 6 222222 3 6 6 6 0 6 0000000 6 4 222222222222222222222222222222222222222222222222222 777777777777 5 5 5 5 5 4 4 4 4 7 4 4 1111 4 444444 1 7 777 6 9 888888888 000 111111111111 9 9 2 1
consensus : ACAC-AATGC-TTTGTAA-A-C-GTT-G------TT--A------GTAAACACG-GCGA-CAA-CTTCAACGGCAAT-TT------AGGTT-TGAT-GA-TTTTT---AATA-CGATTTT--AAGTGAA-TTGG-AAAA-TCTAT-AAACTTAAGT-CTCGTGA-TAGTGTAAACGC-------AAAGAAACCCGTCAAGTCATCGTTGTCTGTGTATGCACCCGAGAAAA-------------ANTGG-----------A--------------TA-----TG------------GATTT-AT-CG-A-GT-ATTGAGCG-A-CA-GC-T-A-AC-G-AT-TAA-AT---GAACTG-T---TTTCGTT-GAAA-------T-TT---TTG----------TTT-AT-C-ATA-TTTTCAATTTGTATC
Reference ( family-110 ) : ACAC-AATGC-TTTGTAA-A-C-GTT-G------TT--A------GTAAACACG-GCGA-CAA-CTTCAACGGCAAT-TT------AGGTT-TGAT-GA-TTTTT---AATA-CGA------AAGTGAA-TTGG-AAAA-TCTAT-AAACTTAAGT-CTCGTGA-TAGTGTAAACGC-------AAAGAAACCCGTCAAGTCATCGTTGTCTGTGTATGCACCCGAGAAAA-------------ANTGG-----------A--------------TA-----TG------------GATTT-AT-CG-A-GT-ATTGAGCG-A-CA-GC-T-A-AC-G-AT-TAA-AT---GAACTG-T---TTTCGTT-GAAA-------T-TT---TTG----------TTT-AT-C-ATA-TTTTCAATTTGTATC
gi|1 : CACGAATTG-TTTGTAA-AAC-GTT-G------TT--A------GTTA---------------CTTCAACGCCAAT-TT------A---T-TGATCGA-TTTT----AATA-CGATTTTT-GAATGAA-TTGG-AAAAATCTAT-AAAGTTAAGG-TGTGTGAGTAGTGTAAACGC-------
gi|1 : cgagG------------GATTT-AT-CGAA-GT-ATT-AGCG-A-TA-GC-T-A-AC---AT-TTA-AT---GATTTG-T---TTTCATT-G--A-------T-TT---TTT----------TAA-AT-C-ATA-TTTTCAA-TTGTATCcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaatgggatttatcgaagtattagcgatagctaacatttaatgatttgttttcattgatttttttaaatcatattttcaattgtatcggct
gi|10 : cgagcacgaattgtttgtaaaacgttgttagttacttcaacgccaatttattgatcgattttaatacgatttttgaatgaattggaaaaatctataaagttaaggtgtgtgagtagtgtaaacgccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaatg-A-C-GTT-G------T----------GTAAAC-TG-GCGAACAA--TTCAACGGCAATATTG-----AGGTT-TGAT-GA---TTT---A--A-GGA------AAAGGAA-TTGGAAAAA-TCTGT-AGAggct
gi|11 : aaacgttg-A-C-GTT-G------TT--A------GTAAACAT--GCGA-CAA-CTTC-ACGGCAAT-ATGCATGGAGGTC-TGAT-tgtgttacaaatgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaacatgtgtatacaaaatatcgagcgcagctggctctccacggatttaatggactggatcgacgaaaatttatcatctataagttcaattt
gi|11 : aacgttgG------------GATTTTAT-CA-A-AT-ATCGAGCG-A-CA-GC-T-G-GC----T-CCA-AC---GGA---------TTTAAT-GAAA-------T-AT---T-A----------TCT-AT----TA-TGTTCAATTTGttaaaaatctgtagatgtgttacaaaggcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggattttatcaaatatcgagcgacagctggctccaacggatttaatgaaatattatctattatgttcaatttg
gi|12 : aacgttgacgttgttagtaaacatgcgacaacttcacggcaatatgcatggaggtctgatttaaaaatctgtagatgtgttacaaaggcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTGA-TGGTGTAAACGC-------ATAGAAACCCGTCAAGTCATCGTTGTCTGTGTATGCACCCGAAAAAA-------------AC------------------------------A-----TG------------GATTT-AT-CG-A-AT-ATCGAGCG-A-CA-GC-T-A-AC-ATAT-TAA-AT---GAACTG-T---TTT-GTT-CAAA-------A-TT---TTG-----------TT-AC-CTATA-TTTTTAATTTGTAT
gi|13 : ATTA-AT-CG-A-GT-GCTGAGCG-A-TA-GC-T-A-AC-G-AT-TAA-AT---GAACTG-T---TTTCGTT-GAAATGTTTTTT-TT---TTGTTTTTTTTTTTTT-AT-C-ATA-TTTTCAATTTGTATC
gi|14 : T--A------GTAAACACG-GCGA-CTA-CT---------A----------AGGTC-TGAT-GA-TTTTT---AATA-CGA------AAGCGAA-TTGG-AAAA-TCGAT-CAACTTAAGT-TTCGTAA-TAGTGTAAg
gi|15 : g-------------AATGG-----------A--------------TC-----TG------------GATTT--T-CG-A-GT-ATTTATCG-A-CA-GC-T-A----------------------TG-T---TTTTGTT-GAAA-------T-TT---TTT----------TTTTAT-C-ATA-TTTTCAATTTGT
gi|16 : cANTG-A-CA-GC-C-A-AC-ATAT-TAA-AT---GAACTG-T---TTT-GTTCGAAA---------TT---TTG-----------TT-AT-CTATA-TTTTCAATTT
gi|17 : ggtatgataaa-------------AATGG-----------A--------------TC-----TG------------GATTT-AT-CG-A-GT-ATTTATCG-A-CA-GC-T-A-A--------------------TG-T---TTTCGTT-GAAA-------T-TT---TTT----------TTT-AT-C-ATA-TT
gi|18 : ATGCACCCGAGAAAA-------------AC------------------------------A-----TG------------GATTT-AT-GA-A-AT-ATCGAGCG-A-CA-GC-C-A-AT-G-AT-TAA-AT---GAACCG-T---TT
gi|19 : ------------GATTT-AT-TG-A-GT-TTTGAACG-A-TA-GC-T-A-AC-A-AT-TAA-AT---GAA
gi|2 : ACAC-A-TGC-TTTGGTA-A-C-GCT-G------T---A------GTAAACACG-GCG--CAA-CTTCA-CGACAAT-TT------AGGTT-TGAT-GA-TTTT----AATA-C-ATTTTTTGAGTGAA-TTGG-AAAA-TTTAT-AAACTTAAGT-CTCGTGA-TAGTGTAAACGC-------AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NNNNN-----------N--------------NN-----NNNNNNNNNNNNATGATTT-AT-CG-A-GT-A-TGA-CG-A-TA-GC-T-A-AC-G-AT-TAA-AT---GAACTGCT---TTTCGTT-GAAA-------TGTT---TTA----------TTT-AT-C-ATA-TTTTCAATTTGTA
gi|3 : ACAC-AATGC-TTTGTAA-A-C-GTT-G------TT--A------GTAAACACG-GCGA-CAA-CTTCAACGGCAAT-TT------AGGTT-TGAT-GA-TTTTTTTTAATA-CGATTTTT-GAGTGAA-TTGG-AAAA-TCTAT-AAACATAAGT-CTCGTGA-TATTGTAAACGC-------ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NNNNN-----------N--------------NN-----NN------------NNNNN-NT-CG-A-GT-ATTGAGCG-A-TA-GC-T-A-AC-G-AT-TAA-AT---GAATTG-T---TTTCGTT-GA-----------TT---TTG----------TTT-AT-C-ATG-TTTCCAATTTGTATC
gi|4 : C-GATGCCTTTGTAA---C-GTTTG------TTTTG------GTAA-CACG-GGGA-CAA-AT-CAACGGCAAT-TTTT----AGTCT-TGATTGA-TTTTT---AACA--GATTTTA-AAGTGAA-TTGG-AAAA-TCTAT-AAACTTTAGT-CTTGTGA-TAGTGTAAACGC-------AAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NNNNN-----------NNNNNNNNNNNNNNTTA-----TG------------GATTG-AT-TA-A-GT-ATTGAGCG-ACCA-GTGT-ATAC-G--T-TA--------AACTG-TATATCTTATC-G-AA-------T-GT---TT-----------TTT-AT-
gi|5 : ATGC-TTTGTAAGA-C-GTT-G------TT--AACATTAGTAAACACGTGCGA-CTA-CT---------A----------AGGTCCTGAT-GAATTTTT---AAT--CGA------AAGCGAAATTGG-AAAA-TCGATCAAACTTAAGT-TTCGTAA-TAGTGTAAGCGC-------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NNNNNNNNNNNNNNNCA--------------TATGGATTG------------GATTT-ATCCG-A-GTAATTTA-CGAA-CA-GC-T-A-AC-G--T-----------------T---TTCCGTT-GAAA-------T-TT---TT-----------TTT-AT-C-ATA--TTTCAATTTtgt
gi|6 : agcCAC-AATGC-TTTGTTA-A-T-GTT-G------TA--A------GTAAACACA-GCGA-AAA-CTTCAACGGCAAT-TT------AGGTT-TGAT-GA-CTTCT---ATTAGCGA------AAGTGAA-TTGG-AAAA-TCTGT-ATACTTGAGT-GTACTGA-T--NNNNNNNNN-------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NNNNN-----------N--------------NN-----TG------------GATTT-AT-CA-A-AT-ATTGAGCG-A-CA-AC-C-A-AC-G-AT-TAT-ACTGAGAACCG-T---TTTCTTT-AAAA-------C-TTCAGTTG-----------TT-ATCC-ATATTTTTCAATttgt
gi|7 : C-TTTGTAA-A-CCGCT-G------TT--A------GTAAACACG-GTGA-CAAACTTCAACGGCAAA-TT------AGGTT-TGAT-GA-TTTT-----ACA-CGATTTTTTGAGTGAATTTGG-AAAA-TCTAT-AAACTTAAGTCCTCGTGA-TA-TGT-AACGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NNNNN-----------N--------------NA-----TG------------GATTT-AT-TG-ACGT-ATTGA----A-CATGCGT-A-AC-GAAT-TAATAT---GAA
gi|8 : gcTGTCA-A-C-GTT-G------TT--ACATGTAGTAAACACG-GCGA-CAA-CT--------------------AAGGT-TGAT-GA-TTTTT---AATA-CGA------A-GTGAA-TTGG-AAAA-TCTAT-AAACT-AAGT-CTTGTAA-TAGTGTAAACGC-------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATGG-----------A--------------TC-----TG------------GATTT-AT-CG-A-GT-ATTGAGCG-A-TA-GC-TCA-AC-G-ATATGA------GAACTG-A---TTTCGTT-GAAT-------T-TT---TTT----------TTT-AT-C-ATA-TTTTCAATTatccaagttgtcaacattttctcaatactttat
gi|9 : taGC-TTTGCAA-A-C-GTT-GACGTTATT--A------GTAAACATG-ACGA-CAA-CTTCAACGGCAAA-TT------AGGTT-TTAT-GA--TTTT---A--A-CGA------AAGTGCA-TAGG-AAAA-TTTGT-AACCTTGATT-CTAGTGA-TAGTGTAAACGC-------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NCC----------------------------CA-----TG------------GATTT-AT-CG-A-AT-ATTGAGGG-A-CA-GC-T-A-ACGG-AT-TAA-AA---GAAATG-T---TTTCTTC-CAAA---------CT---TTG-----------TT-GT-CTATA-TTTTCAATT